Query 009741
Match_columns 527
No_of_seqs 340 out of 2148
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 2.9E-37 6.2E-42 329.3 16.1 324 164-509 108-447 (590)
2 cd04016 C2_Tollip C2 domain pr 99.8 6.7E-20 1.4E-24 158.5 15.2 112 13-125 1-121 (121)
3 cd08376 C2B_MCTP_PRT C2 domain 99.8 2E-18 4.3E-23 149.1 15.2 112 15-126 1-115 (116)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 2E-18 4.2E-23 151.4 14.1 99 16-114 1-109 (126)
5 cd08379 C2D_MCTP_PRT_plant C2 99.8 5.4E-18 1.2E-22 147.6 13.5 99 16-114 2-111 (126)
6 KOG1030 Predicted Ca2+-depende 99.8 2.2E-18 4.9E-23 152.3 11.2 113 13-126 5-119 (168)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.7E-18 2.1E-22 145.9 15.1 112 15-126 1-120 (121)
8 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.5E-17 5.5E-22 142.8 15.8 112 14-125 1-118 (119)
9 cd04024 C2A_Synaptotagmin-like 99.8 1.8E-17 4E-22 145.5 14.3 112 14-125 1-128 (128)
10 cd08681 C2_fungal_Inn1p-like C 99.8 1.2E-17 2.6E-22 144.6 13.0 110 14-124 1-117 (118)
11 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.8E-17 6.1E-22 142.9 14.4 109 16-124 2-120 (121)
12 cd04022 C2A_MCTP_PRT_plant C2 99.7 2E-17 4.3E-22 145.3 13.6 111 15-125 1-125 (127)
13 cd08375 C2_Intersectin C2 doma 99.7 4.5E-17 9.8E-22 144.4 15.8 116 10-125 11-135 (136)
14 cd04019 C2C_MCTP_PRT_plant C2 99.7 5.4E-17 1.2E-21 146.2 15.3 113 15-127 1-133 (150)
15 cd04046 C2_Calpain C2 domain p 99.7 1.5E-16 3.3E-21 139.4 16.1 100 13-113 2-101 (126)
16 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 8.6E-17 1.9E-21 139.9 14.4 109 16-124 2-120 (121)
17 cd04036 C2_cPLA2 C2 domain pre 99.7 8.2E-17 1.8E-21 139.7 14.0 111 15-126 1-118 (119)
18 cd08391 C2A_C2C_Synaptotagmin_ 99.7 9.3E-17 2E-21 139.5 14.4 111 14-125 1-121 (121)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.2E-16 2.7E-21 139.3 15.1 99 16-114 2-103 (123)
20 cd08678 C2_C21orf25-like C2 do 99.7 1E-16 2.3E-21 140.5 14.6 109 16-126 1-120 (126)
21 cd08677 C2A_Synaptotagmin-13 C 99.7 4.3E-17 9.3E-22 138.9 11.7 100 10-112 10-118 (118)
22 cd08381 C2B_PI3K_class_II C2 d 99.7 5.3E-17 1.1E-21 141.3 12.4 99 13-112 12-121 (122)
23 cd04027 C2B_Munc13 C2 domain s 99.7 1.5E-16 3.2E-21 139.6 14.3 111 15-125 2-125 (127)
24 cd08394 C2A_Munc13 C2 domain f 99.7 1.4E-16 3.1E-21 137.0 13.8 104 14-122 2-113 (127)
25 cd04028 C2B_RIM1alpha C2 domai 99.7 1.5E-16 3.2E-21 141.9 13.3 103 13-115 28-139 (146)
26 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.6E-16 3.6E-21 138.0 13.2 105 16-125 2-119 (121)
27 cd08395 C2C_Munc13 C2 domain t 99.7 1.3E-16 2.9E-21 137.6 12.5 99 15-114 1-112 (120)
28 cd04017 C2D_Ferlin C2 domain f 99.7 7.2E-16 1.6E-20 136.8 15.6 114 14-127 1-133 (135)
29 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.6E-16 7.9E-21 138.3 13.6 100 15-114 1-115 (133)
30 cd08393 C2A_SLP-1_2 C2 domain 99.7 2.5E-16 5.3E-21 137.8 12.3 103 11-113 12-125 (125)
31 cd04043 C2_Munc13_fungal C2 do 99.7 8.3E-16 1.8E-20 134.7 15.6 113 14-127 1-122 (126)
32 cd04014 C2_PKC_epsilon C2 doma 99.7 9.8E-16 2.1E-20 135.4 16.0 113 13-127 3-130 (132)
33 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.8E-16 8.2E-21 136.6 13.0 103 11-113 12-125 (125)
34 cd04015 C2_plant_PLD C2 domain 99.7 9.6E-16 2.1E-20 139.4 16.0 112 13-125 6-157 (158)
35 cd04010 C2B_RasA3 C2 domain se 99.7 3.7E-16 7.9E-21 140.1 12.2 99 15-115 1-123 (148)
36 cd08400 C2_Ras_p21A1 C2 domain 99.7 2E-15 4.3E-20 132.3 16.1 110 14-127 4-124 (126)
37 cd04050 C2B_Synaptotagmin-like 99.7 5.4E-16 1.2E-20 131.4 12.0 97 15-114 1-102 (105)
38 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.2E-16 9.2E-21 136.6 11.7 103 11-113 12-128 (128)
39 cd08387 C2A_Synaptotagmin-8 C2 99.7 6.4E-16 1.4E-20 135.0 12.9 103 11-113 13-123 (124)
40 cd08385 C2A_Synaptotagmin-1-5- 99.7 8.9E-16 1.9E-20 134.1 13.3 103 11-113 13-123 (124)
41 cd04031 C2A_RIM1alpha C2 domai 99.7 7.1E-16 1.5E-20 134.9 12.7 103 11-113 13-125 (125)
42 cd08382 C2_Smurf-like C2 domai 99.7 2.1E-15 4.6E-20 131.5 14.9 110 16-126 2-121 (123)
43 cd04041 C2A_fungal C2 domain f 99.7 4.9E-16 1.1E-20 133.0 10.7 99 14-113 1-107 (111)
44 cd08688 C2_KIAA0528-like C2 do 99.7 6.1E-16 1.3E-20 132.2 11.1 98 16-113 1-108 (110)
45 cd08680 C2_Kibra C2 domain fou 99.7 8E-16 1.7E-20 133.8 11.6 103 10-112 10-124 (124)
46 cd04039 C2_PSD C2 domain prese 99.7 1.2E-15 2.5E-20 129.8 12.0 89 14-102 1-95 (108)
47 cd04045 C2C_Tricalbin-like C2 99.7 2.6E-15 5.7E-20 130.3 14.2 101 14-114 1-103 (120)
48 cd08386 C2A_Synaptotagmin-7 C2 99.6 2.3E-15 5E-20 131.7 13.6 104 11-114 13-125 (125)
49 cd08685 C2_RGS-like C2 domain 99.6 9.6E-16 2.1E-20 132.7 10.7 100 12-112 10-119 (119)
50 cd08388 C2A_Synaptotagmin-4-11 99.6 2.1E-15 4.5E-20 132.5 12.8 105 10-114 12-128 (128)
51 cd04044 C2A_Tricalbin-like C2 99.6 2.6E-15 5.6E-20 131.0 13.3 113 14-126 2-123 (124)
52 cd04049 C2_putative_Elicitor-r 99.6 2.7E-15 5.8E-20 131.1 12.9 102 14-115 1-109 (124)
53 cd08521 C2A_SLP C2 domain firs 99.6 3.7E-15 8.1E-20 129.9 12.9 102 11-112 11-123 (123)
54 cd04051 C2_SRC2_like C2 domain 99.6 1.9E-15 4E-20 132.3 11.0 110 15-124 1-124 (125)
55 cd04030 C2C_KIAA1228 C2 domain 99.6 3.8E-15 8.3E-20 130.6 12.9 103 11-113 13-127 (127)
56 cd08390 C2A_Synaptotagmin-15-1 99.6 4.2E-15 9.1E-20 129.6 12.9 104 11-114 11-123 (123)
57 cd04038 C2_ArfGAP C2 domain pr 99.6 4E-15 8.7E-20 133.0 12.8 88 14-102 2-89 (145)
58 cd08389 C2A_Synaptotagmin-14_1 99.6 5E-15 1.1E-19 129.3 12.6 104 10-114 12-124 (124)
59 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.1E-15 2.3E-20 135.4 8.4 107 11-117 10-124 (133)
60 cd04011 C2B_Ferlin C2 domain s 99.6 5.1E-15 1.1E-19 126.7 12.0 97 13-113 3-109 (111)
61 cd08676 C2A_Munc13-like C2 dom 99.6 5.1E-15 1.1E-19 133.1 12.5 101 8-112 22-153 (153)
62 cd08373 C2A_Ferlin C2 domain f 99.6 1.5E-14 3.2E-19 127.0 14.5 93 20-114 2-99 (127)
63 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 5.6E-15 1.2E-19 134.9 12.1 104 11-114 24-138 (162)
64 cd04018 C2C_Ferlin C2 domain t 99.6 4.9E-15 1.1E-19 133.0 11.4 100 15-114 1-125 (151)
65 cd04032 C2_Perforin C2 domain 99.6 8.9E-15 1.9E-19 127.5 12.7 94 9-103 23-118 (127)
66 cd08406 C2B_Synaptotagmin-12 C 99.6 2.2E-15 4.7E-20 133.4 7.9 105 10-114 11-123 (136)
67 PF02893 GRAM: GRAM domain; I 99.6 2E-15 4.3E-20 117.5 6.6 66 164-229 2-69 (69)
68 cd08675 C2B_RasGAP C2 domain s 99.6 8.9E-15 1.9E-19 129.9 11.6 99 16-115 1-121 (137)
69 cd04040 C2D_Tricalbin-like C2 99.6 1.4E-14 3.1E-19 124.7 12.5 102 16-117 1-106 (115)
70 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.9E-15 8.4E-20 132.3 8.7 108 11-118 12-127 (136)
71 cd08402 C2B_Synaptotagmin-1 C2 99.6 4E-15 8.7E-20 132.2 7.1 106 9-114 10-123 (136)
72 cd08383 C2A_RasGAP C2 domain ( 99.6 5.2E-14 1.1E-18 121.5 13.7 105 16-124 2-116 (117)
73 cd04026 C2_PKC_alpha_gamma C2 99.6 2.8E-14 6E-19 125.9 12.0 105 14-118 13-126 (131)
74 cd08407 C2B_Synaptotagmin-13 C 99.6 1E-14 2.2E-19 129.1 8.6 104 10-113 11-124 (138)
75 KOG0696 Serine/threonine prote 99.5 2.1E-15 4.6E-20 149.7 4.1 106 13-118 179-293 (683)
76 cd08691 C2_NEDL1-like C2 domai 99.5 1.1E-13 2.5E-18 122.3 14.6 99 15-115 2-122 (137)
77 cd08405 C2B_Synaptotagmin-7 C2 99.5 1.2E-14 2.6E-19 129.1 8.3 105 11-115 12-124 (136)
78 cd04009 C2B_Munc13-like C2 dom 99.5 3.5E-14 7.6E-19 125.6 11.1 92 12-103 14-117 (133)
79 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.7E-14 3.7E-19 127.8 8.6 107 11-117 11-125 (134)
80 cd08410 C2B_Synaptotagmin-17 C 99.5 2.5E-14 5.4E-19 126.9 8.7 107 11-117 11-126 (135)
81 cd08690 C2_Freud-1 C2 domain f 99.5 2.9E-13 6.4E-18 121.6 15.2 111 17-127 5-138 (155)
82 KOG1032 Uncharacterized conser 99.5 1.7E-14 3.7E-19 154.9 8.3 483 5-509 88-582 (590)
83 cd04021 C2_E3_ubiquitin_ligase 99.5 2.3E-13 4.9E-18 119.0 13.9 97 15-113 3-107 (125)
84 cd04048 C2A_Copine C2 domain f 99.5 6.4E-14 1.4E-18 121.6 10.3 95 20-114 6-114 (120)
85 cd08408 C2B_Synaptotagmin-14_1 99.5 2.6E-14 5.6E-19 127.0 8.0 106 9-114 10-125 (138)
86 cd00276 C2B_Synaptotagmin C2 d 99.5 2.3E-14 5.1E-19 126.8 7.6 107 11-117 11-125 (134)
87 cd04037 C2E_Ferlin C2 domain f 99.5 1.2E-13 2.6E-18 120.6 11.6 89 15-103 1-92 (124)
88 smart00568 GRAM domain in gluc 99.5 5.3E-14 1.1E-18 106.7 7.0 60 170-229 1-61 (61)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.5 3.3E-13 7.2E-18 117.6 12.9 101 11-112 12-121 (123)
90 cd08692 C2B_Tac2-N C2 domain s 99.5 1.5E-13 3.3E-18 120.0 10.3 105 9-113 9-122 (135)
91 cd04013 C2_SynGAP_like C2 doma 99.5 8.5E-13 1.8E-17 117.4 15.0 97 13-114 10-113 (146)
92 cd04052 C2B_Tricalbin-like C2 99.5 4.4E-13 9.6E-18 114.7 12.0 96 31-127 9-110 (111)
93 cd08686 C2_ABR C2 domain in th 99.5 7.5E-13 1.6E-17 112.6 12.9 81 16-102 1-93 (118)
94 cd00275 C2_PLC_like C2 domain 99.5 1.8E-12 3.9E-17 113.7 15.0 102 14-117 2-113 (128)
95 cd08409 C2B_Synaptotagmin-15 C 99.5 1.5E-13 3.2E-18 122.2 8.1 103 11-114 12-124 (137)
96 KOG1011 Neurotransmitter relea 99.5 1.3E-13 2.8E-18 142.3 8.7 115 13-127 294-425 (1283)
97 cd04047 C2B_Copine C2 domain s 99.4 5.9E-13 1.3E-17 113.6 10.5 94 18-112 4-108 (110)
98 KOG1028 Ca2+-dependent phospho 99.4 1.8E-12 3.8E-17 135.6 15.1 153 11-174 164-331 (421)
99 PLN03200 cellulose synthase-in 99.4 4E-13 8.7E-18 158.7 11.3 112 12-126 1978-2100(2102)
100 PLN03008 Phospholipase D delta 99.4 1.6E-12 3.5E-17 141.4 14.1 118 13-131 13-182 (868)
101 PF00168 C2: C2 domain; Inter 99.3 2.8E-11 6.1E-16 97.4 9.6 81 16-96 1-85 (85)
102 cd00030 C2 C2 domain. The C2 d 99.2 2.5E-10 5.4E-15 94.0 11.3 97 16-112 1-102 (102)
103 smart00239 C2 Protein kinase C 99.1 7.3E-10 1.6E-14 91.5 11.5 88 16-103 2-93 (101)
104 KOG2059 Ras GTPase-activating 99.0 9.8E-10 2.1E-14 115.8 9.3 115 14-129 5-128 (800)
105 PLN02223 phosphoinositide phos 99.0 3.9E-09 8.4E-14 111.0 12.9 106 13-119 408-524 (537)
106 cd08374 C2F_Ferlin C2 domain s 99.0 4.1E-09 8.9E-14 92.2 10.4 88 16-103 2-122 (133)
107 KOG1028 Ca2+-dependent phospho 98.9 2.7E-09 5.8E-14 111.8 8.4 91 11-101 295-393 (421)
108 PLN02952 phosphoinositide phos 98.9 1.5E-08 3.3E-13 108.8 12.5 104 13-117 469-584 (599)
109 COG5038 Ca2+-dependent lipid-b 98.8 9.7E-09 2.1E-13 114.1 10.2 105 11-115 1037-1145(1227)
110 KOG1328 Synaptic vesicle prote 98.8 1.1E-09 2.4E-14 115.1 1.5 122 7-128 107-303 (1103)
111 PLN02230 phosphoinositide phos 98.8 3.7E-08 7.9E-13 105.7 11.6 105 13-118 468-584 (598)
112 PLN02270 phospholipase D alpha 98.8 1E-07 2.2E-12 104.5 14.2 116 13-129 7-151 (808)
113 cd08689 C2_fungal_Pkc1p C2 dom 98.7 4.2E-08 9.1E-13 80.8 8.2 82 16-102 1-86 (109)
114 PLN02222 phosphoinositide phos 98.7 1.1E-07 2.4E-12 101.9 12.8 105 13-118 451-567 (581)
115 KOG0169 Phosphoinositide-speci 98.7 5.4E-08 1.2E-12 104.5 9.7 104 15-119 617-731 (746)
116 COG5038 Ca2+-dependent lipid-b 98.7 1.1E-07 2.4E-12 106.0 12.3 122 9-130 431-561 (1227)
117 PLN02228 Phosphoinositide phos 98.7 2.2E-07 4.7E-12 99.4 14.1 105 13-118 430-547 (567)
118 KOG1328 Synaptic vesicle prote 98.7 1.2E-08 2.6E-13 107.6 3.5 91 12-102 945-1047(1103)
119 KOG1031 Predicted Ca2+-depende 98.6 7.1E-08 1.5E-12 99.4 8.3 114 14-127 3-137 (1169)
120 KOG1264 Phospholipase C [Lipid 98.5 3.3E-07 7.2E-12 98.0 9.7 99 13-113 1064-1170(1267)
121 KOG2059 Ras GTPase-activating 98.4 1.4E-06 2.9E-11 92.6 9.1 108 6-114 108-253 (800)
122 KOG1326 Membrane-associated pr 98.2 1.2E-06 2.6E-11 96.1 3.6 91 11-101 610-703 (1105)
123 PLN02352 phospholipase D epsil 98.0 7E-05 1.5E-09 82.4 12.8 111 12-130 8-134 (758)
124 KOG4347 GTPase-activating prot 97.9 6.2E-06 1.3E-10 87.3 4.0 104 158-280 6-113 (671)
125 KOG0905 Phosphoinositide 3-kin 97.9 1.1E-05 2.4E-10 89.8 4.8 102 13-114 1523-1635(1639)
126 cd08683 C2_C2cd3 C2 domain fou 97.7 8.6E-05 1.9E-09 63.4 5.6 97 16-112 1-143 (143)
127 KOG1011 Neurotransmitter relea 97.7 0.00018 3.9E-09 75.8 9.0 101 13-114 1124-1237(1283)
128 KOG1013 Synaptic vesicle prote 97.6 5.2E-05 1.1E-09 74.3 4.7 99 12-110 231-337 (362)
129 KOG1327 Copine [Signal transdu 97.5 0.00021 4.6E-09 75.2 7.6 153 48-211 43-220 (529)
130 KOG1326 Membrane-associated pr 97.5 2.2E-05 4.8E-10 86.5 -0.0 102 12-113 204-316 (1105)
131 PLN02964 phosphatidylserine de 97.1 0.0008 1.7E-08 73.6 6.4 83 13-102 53-137 (644)
132 PF14470 bPH_3: Bacterial PH d 97.1 0.012 2.7E-07 48.2 12.2 86 171-274 1-88 (96)
133 KOG1013 Synaptic vesicle prote 96.9 0.00017 3.7E-09 70.8 -0.8 93 12-104 91-192 (362)
134 KOG1327 Copine [Signal transdu 96.8 0.0021 4.5E-08 67.9 5.8 82 21-103 143-235 (529)
135 KOG2060 Rab3 effector RIM1 and 96.7 0.00093 2E-08 66.8 2.9 103 12-114 267-379 (405)
136 PF14844 PH_BEACH: PH domain a 96.6 0.0043 9.4E-08 52.3 5.4 86 177-276 2-104 (106)
137 cd08684 C2A_Tac2-N C2 domain f 96.2 0.0037 7.9E-08 49.8 2.8 92 17-111 2-102 (103)
138 PF10698 DUF2505: Protein of u 96.2 0.77 1.7E-05 41.6 18.1 149 341-503 4-158 (159)
139 KOG3837 Uncharacterized conser 96.0 0.0093 2E-07 60.4 4.8 112 15-126 368-503 (523)
140 cd08687 C2_PKN-like C2 domain 95.3 0.24 5.1E-06 40.0 9.5 83 35-125 9-92 (98)
141 PF12416 DUF3668: Cep120 prote 94.9 0.39 8.4E-06 49.0 12.3 111 16-129 2-135 (340)
142 KOG1452 Predicted Rho GTPase-a 94.4 0.089 1.9E-06 51.7 6.1 114 11-126 48-167 (442)
143 KOG1265 Phospholipase C [Lipid 94.2 0.11 2.4E-06 57.6 7.0 93 13-114 702-805 (1189)
144 PF15627 CEP76-C2: CEP76 C2 do 94.1 0.65 1.4E-05 41.7 10.6 92 11-102 6-115 (156)
145 cd08871 START_STARD10-like Lip 93.4 1.8 4E-05 41.4 13.4 155 341-512 52-215 (222)
146 cd08398 C2_PI3K_class_I_alpha 93.1 0.82 1.8E-05 41.4 9.6 84 15-102 9-106 (158)
147 PF10358 NT-C2: N-terminal C2 93.0 3.9 8.4E-05 36.0 14.0 117 11-131 4-138 (143)
148 cd08693 C2_PI3K_class_I_beta_d 93.0 0.72 1.6E-05 42.5 9.4 86 15-102 9-120 (173)
149 cd01201 Neurobeachin Neurobeac 92.9 0.39 8.4E-06 40.2 6.6 89 175-279 1-104 (108)
150 cd08380 C2_PI3K_like C2 domain 91.6 1.3 2.7E-05 40.0 9.1 87 15-102 9-107 (156)
151 cd05018 CoxG Carbon monoxide d 91.6 7.9 0.00017 33.5 14.2 72 423-504 72-143 (144)
152 cd08397 C2_PI3K_class_III C2 d 91.4 0.92 2E-05 41.2 7.9 70 33-102 28-107 (159)
153 cd08876 START_1 Uncharacterize 91.3 10 0.00023 35.2 15.3 131 338-484 43-178 (195)
154 PF00407 Bet_v_1: Pathogenesis 91.2 11 0.00023 33.8 14.7 143 338-506 6-150 (151)
155 cd08868 START_STARD1_3_like Ch 90.7 13 0.00028 35.1 15.5 141 338-494 50-199 (208)
156 smart00234 START in StAR and p 89.3 19 0.00041 33.7 16.2 151 339-503 48-203 (206)
157 PF01852 START: START domain; 89.2 12 0.00027 34.8 14.1 145 340-502 50-202 (206)
158 cd04012 C2A_PI3K_class_II C2 d 89.0 2.1 4.5E-05 39.3 8.2 90 13-102 7-119 (171)
159 cd00177 START Lipid-binding ST 88.7 9.6 0.00021 34.9 12.7 122 339-474 42-167 (193)
160 cd08869 START_RhoGAP C-termina 87.4 19 0.00042 33.7 13.9 118 339-473 47-169 (197)
161 cd08905 START_STARD1-like Chol 86.0 16 0.00035 34.6 12.7 141 340-496 53-202 (209)
162 cd07821 PYR_PYL_RCAR_like Pyra 85.4 21 0.00046 30.3 12.4 102 339-463 4-106 (140)
163 cd08399 C2_PI3K_class_I_gamma 85.4 7.1 0.00015 36.1 9.4 69 15-84 11-88 (178)
164 PF11605 Vps36_ESCRT-II: Vacuo 85.0 2.4 5.2E-05 34.4 5.5 50 191-241 36-85 (89)
165 PF11696 DUF3292: Protein of u 83.8 3.1 6.7E-05 45.5 7.2 83 180-280 520-634 (642)
166 PF00792 PI3K_C2: Phosphoinosi 83.1 12 0.00025 33.1 9.7 54 49-102 23-85 (142)
167 cd07823 SRPBCC_5 Ligand-bindin 82.7 32 0.0007 30.1 12.9 72 422-503 70-143 (146)
168 cd08694 C2_Dock-A C2 domains f 82.6 14 0.0003 34.7 10.0 54 47-100 54-114 (196)
169 cd08872 START_STARD11-like Cer 82.3 17 0.00036 35.3 11.1 80 423-507 136-231 (235)
170 cd08904 START_STARD6-like Lipi 81.8 39 0.00085 31.9 13.2 141 339-496 49-199 (204)
171 cd08906 START_STARD3-like Chol 80.8 41 0.00088 31.9 13.1 146 338-500 51-206 (209)
172 cd08695 C2_Dock-B C2 domains f 80.4 15 0.00033 34.2 9.6 55 47-101 54-113 (189)
173 PF15625 CC2D2AN-C2: CC2D2A N- 78.8 21 0.00046 32.6 10.0 79 34-113 36-123 (168)
174 PF08567 TFIIH_BTF_p62_N: TFII 78.2 11 0.00025 29.7 7.0 50 192-243 13-66 (79)
175 PF14429 DOCK-C2: C2 domain in 77.9 12 0.00026 34.7 8.3 55 48-102 61-121 (184)
176 cd08870 START_STARD2_7-like Li 77.6 64 0.0014 30.4 15.3 149 339-502 53-208 (209)
177 cd08910 START_STARD2-like Lipi 77.3 58 0.0013 30.8 12.9 117 340-471 53-176 (207)
178 cd08908 START_STARD12-like C-t 77.2 32 0.00069 32.5 10.9 119 339-473 55-176 (204)
179 cd08907 START_STARD8-like C-te 76.0 23 0.0005 33.4 9.4 53 420-475 124-179 (205)
180 cd08873 START_STARD14_15-like 74.6 82 0.0018 30.5 13.2 119 338-470 79-203 (235)
181 smart00142 PI3K_C2 Phosphoinos 74.2 19 0.00042 29.7 7.7 70 16-85 13-92 (100)
182 cd08877 START_2 Uncharacterize 72.7 35 0.00076 32.3 10.2 123 338-474 48-186 (215)
183 cd08874 START_STARD9-like C-te 72.5 88 0.0019 29.6 13.5 119 338-472 47-176 (205)
184 cd08909 START_STARD13-like C-t 70.3 63 0.0014 30.6 11.1 119 341-474 57-178 (205)
185 KOG4471 Phosphatidylinositol 3 67.9 22 0.00048 38.5 8.1 90 164-268 29-122 (717)
186 smart00683 DM16 Repeats in sea 67.8 13 0.00027 27.2 4.5 35 192-227 20-54 (55)
187 cd08867 START_STARD4_5_6-like 67.5 81 0.0018 29.6 11.4 124 338-473 48-179 (206)
188 KOG0694 Serine/threonine prote 67.3 1.6 3.6E-05 47.7 -0.3 96 32-129 25-124 (694)
189 COG4687 Uncharacterized protei 67.0 11 0.00024 31.5 4.5 62 190-267 22-84 (122)
190 PF06115 DUF956: Domain of unk 63.8 42 0.00092 28.5 7.5 55 188-243 20-76 (118)
191 cd08911 START_STARD7-like Lipi 61.4 1.5E+02 0.0032 28.0 15.7 145 341-500 50-204 (207)
192 cd08913 START_STARD14-like Lip 61.3 1.6E+02 0.0036 28.5 13.0 113 339-463 84-204 (240)
193 cd08696 C2_Dock-C C2 domains f 61.2 34 0.00075 31.6 7.2 55 47-101 55-118 (179)
194 PF07289 DUF1448: Protein of u 59.8 47 0.001 33.8 8.4 81 192-285 42-129 (339)
195 cd08679 C2_DOCK180_related C2 59.0 26 0.00057 32.2 6.2 52 50-101 56-115 (178)
196 cd08903 START_STARD5-like Lipi 58.5 1.6E+02 0.0036 27.7 13.5 147 339-499 49-204 (208)
197 cd08697 C2_Dock-D C2 domains f 55.6 50 0.0011 30.7 7.3 55 47-101 57-123 (185)
198 cd08861 OtcD1_ARO-CYC_like N-t 51.2 1.5E+02 0.0032 25.4 9.5 59 440-504 82-140 (142)
199 PTZ00447 apical membrane antig 48.9 2.4E+02 0.0052 28.8 11.1 107 14-127 58-172 (508)
200 PF11618 DUF3250: Protein of u 44.5 51 0.0011 27.7 5.1 63 38-102 2-73 (107)
201 PF07289 DUF1448: Protein of u 43.0 1.4E+02 0.0031 30.4 8.8 102 170-285 150-255 (339)
202 PF11687 DUF3284: Domain of un 38.3 2.5E+02 0.0055 23.9 11.2 95 340-463 3-97 (120)
203 PF06713 bPH_4: Bacterial PH d 37.8 1.9E+02 0.0041 22.3 7.0 62 198-279 6-72 (74)
204 PF10604 Polyketide_cyc2: Poly 34.3 2.8E+02 0.006 23.2 14.7 103 340-471 6-108 (139)
205 COG2867 Oligoketide cyclase/li 34.0 49 0.0011 29.4 3.4 28 442-472 85-112 (146)
206 PF07162 B9-C2: Ciliary basal 31.9 3.9E+02 0.0084 24.2 10.9 80 16-101 4-103 (168)
207 cd07814 SRPBCC_CalC_Aha1-like 31.2 3.1E+02 0.0068 22.9 13.4 135 340-505 4-138 (139)
208 PRK10724 hypothetical protein; 29.5 98 0.0021 27.9 4.8 30 439-471 94-123 (158)
209 KOG4269 Rac GTPase-activating 29.3 27 0.00059 39.6 1.3 96 11-112 756-866 (1112)
210 cd07813 COQ10p_like Coenzyme Q 27.3 1.2E+02 0.0026 25.9 4.9 28 443-473 82-109 (138)
211 cd08862 SRPBCC_Smu440-like Lig 27.1 3.7E+02 0.0081 22.4 12.4 23 441-463 80-102 (138)
212 cd07818 SRPBCC_1 Ligand-bindin 26.7 1.4E+02 0.003 25.9 5.3 58 442-504 91-148 (150)
213 cd08866 SRPBCC_11 Ligand-bindi 25.5 1.8E+02 0.0038 24.9 5.7 28 443-473 88-116 (144)
214 KOG1329 Phospholipase D1 [Lipi 25.1 64 0.0014 36.9 3.3 80 35-114 138-221 (887)
215 PF04283 CheF-arch: Chemotaxis 24.1 94 0.002 29.8 3.8 34 191-228 26-59 (221)
216 cd07817 SRPBCC_8 Ligand-bindin 20.5 5.1E+02 0.011 21.6 12.0 27 443-472 80-106 (139)
217 PF03703 bPH_2: Bacterial PH d 20.2 3.8E+02 0.0083 20.1 7.4 47 195-242 6-56 (80)
218 cd08860 TcmN_ARO-CYC_like N-te 20.0 2.3E+02 0.005 24.9 5.3 28 441-472 86-113 (146)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=2.9e-37 Score=329.27 Aligned_cols=324 Identities=22% Similarity=0.319 Sum_probs=246.7
Q ss_pred cccccc--ccCcccceeEeEEEeeeeccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccC-cEEEE
Q 009741 164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII 240 (527)
Q Consensus 164 ~f~~~F--~lp~~e~l~~~f~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~-~i~i~ 240 (527)
.|...+ ++|+++.|+.+|+|+|++.+++|||||++..||||||++|||+++.+||+.+|+.|+|+.+++++| +|+|.
T Consensus 108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~ 187 (590)
T KOG1032|consen 108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT 187 (590)
T ss_pred hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence 444444 388999999999999999999999999999999999999999999999999999999999998866 88888
Q ss_pred EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccCch-hHHhhhhhhccccCC--C---CCCCCccc-
Q 009741 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLE-AEKKEKAESALRAHS--S---SIGGSRRQ- 313 (527)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~~~~~~~~~~-~~~~~~~~s~~~~~s--s---~~~~~~~~- 313 (527)
+ +..+|+|+||++||.+|.++..+.+..-.... ......+.+....+. + +.+....+
T Consensus 188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s 251 (590)
T KOG1032|consen 188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPS 251 (590)
T ss_pred c----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCcc
Confidence 4 45799999999999999977555443211100 000000000000000 0 00000000
Q ss_pred ccccccccCCC----CCCCCCCcccccceeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCe
Q 009741 314 AKIVEETVTKP----EKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQ 389 (527)
Q Consensus 314 ~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~ 389 (527)
+.......+.. ......+++ .+..+.+..|++++..+|.++|+ +..|+..+.+.++..++...+|..... +..
T Consensus 252 ~~~~s~~~~~~e~~~~~~~~~~~~-~~~v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~-~~~ 328 (590)
T KOG1032|consen 252 ALQNSFDSPKEEELEHDFSCSLSR-LFGVLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRS-GIL 328 (590)
T ss_pred ccccccCCCccccccccccccccc-cccccccccccccccccceeecc-CcceeeeccccccccccccccccCCCc-cce
Confidence 00000000000 011111121 12467889999999999999999 677877899999999999999999776 789
Q ss_pred EEEEEEEEecCCCCCCcceeEeEEEEEEEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeE
Q 009741 390 VREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGA 469 (527)
Q Consensus 390 ~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V 469 (527)
.|.++|+.++..++|||+|.|..+|.+.+.+...|+.|..++.+++||||+.|.+.+||+|+|.++..|++.++ .+|
T Consensus 329 ~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~---~~V 405 (590)
T KOG1032|consen 329 LRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS---TSV 405 (590)
T ss_pred eEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce---eEE
Confidence 99999999999999999999999999998777778999999999999999999999999999999999999999 999
Q ss_pred EEeecceeeeeeehhh--HHHHHHHHHHHHHHHHHHHhhcCC
Q 009741 470 HFKKWCVIQFKIKTGA--VNKYKKEVELMLETARSYIKICTS 509 (527)
Q Consensus 470 ~f~K~t~~K~~Ie~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 509 (527)
.|.+++|.+.+++..+ .+.+.+.+++++..+++.-+....
T Consensus 406 ~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~ 447 (590)
T KOG1032|consen 406 EWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEK 447 (590)
T ss_pred EeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcc
Confidence 9999998888877765 677788888888766655444433
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=6.7e-20 Score=158.50 Aligned_cols=112 Identities=20% Similarity=0.284 Sum_probs=98.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~ 91 (527)
+|.|.|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||.|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 479999999999998877 799999999999999999999866 799999999999997666789999999999999999
Q ss_pred eEEEEEEcc-cC--CCcccEEEEccC-----CCceEEEEEEE
Q 009741 92 LGSVIVTVE-SE--GQTGAVWYTLDS-----PSGQVCLHIKT 125 (527)
Q Consensus 92 iG~~~i~l~-~l--~~~~~~w~~L~~-----~~G~i~l~l~~ 125 (527)
||.+.+++. .+ +...+.|++|.+ +.|+|+|+|++
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999996 45 455789999976 34888887763
No 3
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.79 E-value=2e-18 Score=149.05 Aligned_cols=112 Identities=24% Similarity=0.358 Sum_probs=101.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG 93 (527)
+++|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.++ ...|.|+|||++..+++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999998899999999999999999999998765 578999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCCceEEEEEEEe
Q 009741 94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI 126 (527)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~l~~~ 126 (527)
++.++|+++ +...+.|++|.+..|++++.+++.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence 999999988 456778999998779998887663
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.79 E-value=2e-18 Score=151.43 Aligned_cols=99 Identities=25% Similarity=0.494 Sum_probs=89.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS 89 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~------~~~~L~~~V~d~d~~~~d 89 (527)
++|+|++|++|+.++..|.+||||++.++..+.+|+++++++||.|||+|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999989999999999999999999999999999999999999865 356799999999999899
Q ss_pred ceeEEEEEEcccCC----CcccEEEEccC
Q 009741 90 TVLGSVIVTVESEG----QTGAVWYTLDS 114 (527)
Q Consensus 90 ~~iG~~~i~l~~l~----~~~~~w~~L~~ 114 (527)
++||++.++|.++. .....||+|.+
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999973 44678999975
No 5
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=5.4e-18 Score=147.58 Aligned_cols=99 Identities=21% Similarity=0.362 Sum_probs=90.3
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC-----
Q 009741 16 IKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----- 87 (527)
Q Consensus 16 L~V~vi~A~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~----- 87 (527)
|.|+|++|++ |+.++..|.+||||++.++.++.+|+++++++||.|||+|.|.+.++...|.|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 88889999999999999999999999999999999999999999776778999999999874
Q ss_pred -CCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 88 -KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 88 -~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
+|++||++.+++..+ +.....||+|..
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 899999999999998 444568999974
No 6
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=152.30 Aligned_cols=113 Identities=24% Similarity=0.392 Sum_probs=98.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i 92 (527)
-|.|.|.|++|.+|..+|..+++||||++.+++++.+|+++.+++||.|||.|.|.+.++...|+++|||+|.++.||||
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m 84 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM 84 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence 58999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcccCCCcccEEEEcc--CCCceEEEEEEEe
Q 009741 93 GSVIVTVESEGQTGAVWYTLD--SPSGQVCLHIKTI 126 (527)
Q Consensus 93 G~~~i~l~~l~~~~~~w~~L~--~~~G~i~l~l~~~ 126 (527)
|.++|+|.++......|+ |. ...|.....+...
T Consensus 85 G~A~I~l~p~~~~~~~~~-l~~~~~~gt~~~~v~~s 119 (168)
T KOG1030|consen 85 GEATIPLKPLLEAQKMDY-LKLELLTGTAIGKVLLS 119 (168)
T ss_pred ceeeeccHHHHHHhhhhc-cccccCCCcEeeEEEec
Confidence 999999999955555565 43 2345544444333
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=9.7e-18 Score=145.92 Aligned_cols=112 Identities=22% Similarity=0.460 Sum_probs=97.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG 93 (527)
.|+|+|++|++|+..+..|.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3789999999999999999999999999976 567999999999999999999998776788999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC-----CceEEEEEEEe
Q 009741 94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI 126 (527)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~ 126 (527)
++.+++.++ +...+.|++|.++ .|.|.+.+++.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999998 4567789999642 36666666654
No 8
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=2.5e-17 Score=142.76 Aligned_cols=112 Identities=23% Similarity=0.461 Sum_probs=98.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG 93 (527)
|.|.|+|++|++|+..+..+.+||||++.++....+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 67899999999999999899999999999998889999999999999999999998776788999999999988999999
Q ss_pred EEEEEcccCCCcccEEEEccCC------CceEEEEEEE
Q 009741 94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKT 125 (527)
Q Consensus 94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~ 125 (527)
++.+++.++......|++|.++ .|+|.+++.+
T Consensus 81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999996667899999642 3555555543
No 9
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.8e-17 Score=145.54 Aligned_cols=112 Identities=24% Similarity=0.427 Sum_probs=97.9
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 009741 14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~ 90 (527)
|.|.|+|++|++|+..+. .+.+||||++.++....+|++++++.+|.|||+|.|.+.. ....|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999988 8899999999999889999999999999999999999876 4678999999999988999
Q ss_pred eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEE
Q 009741 91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT 125 (527)
Q Consensus 91 ~iG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~l~l~~ 125 (527)
+||++.+++.++. .....||+|.++ .|+|++++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999873 335789999764 4666666543
No 10
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.75 E-value=1.2e-17 Score=144.60 Aligned_cols=110 Identities=24% Similarity=0.393 Sum_probs=93.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeec-CCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~ 91 (527)
|.|.|+|++|++|+..+..+.+||||++.++....+|+++. +++||.|||.|.|.+..+ ...|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 67999999999999999999999999999998888999885 479999999999998753 567999999999876 899
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 009741 92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK 124 (527)
Q Consensus 92 iG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~l~l~ 124 (527)
||++.+++.++ +.....|++|..+ .|+|.++++
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~ 117 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence 99999999987 4456899999752 355555554
No 11
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=2.8e-17 Score=142.86 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=93.9
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741 16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 16 L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG 93 (527)
|.|+|++|++|++.+ ..|.+||||.+.++.. ..+|+++++++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 679999999999874 4678999999999765 46899999999999999999999876678999999999999999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 009741 94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK 124 (527)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~l~l~ 124 (527)
.+.++++++ +...+.||+|.+. .|++++.++
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999998 4455789999863 477766654
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=2e-17 Score=145.28 Aligned_cols=111 Identities=21% Similarity=0.359 Sum_probs=94.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS 89 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~~~V~d~d~~~-~d 89 (527)
.|+|+|++|++|++.+..|.+||||++.++++.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++..+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3789999999999999889999999999999999999999999999999999998643 246999999999887 89
Q ss_pred ceeEEEEEEcccCC---CcccEEEEccCC------CceEEEEEEE
Q 009741 90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT 125 (527)
Q Consensus 90 ~~iG~~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~~ 125 (527)
++||++.+++.++. .....||+|..+ .|++.+.+.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 99999999999873 445789999753 3555555443
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=4.5e-17 Score=144.39 Aligned_cols=116 Identities=22% Similarity=0.405 Sum_probs=100.3
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCC
Q 009741 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWK 88 (527)
Q Consensus 10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~ 88 (527)
....|.|+|+|++|++|++.+..|.+||||++.++....+|++++++.||.|||+|.|.+.+. ...|.|+|||++..++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 345799999999999999999999999999999999999999999999999999999998654 4579999999999999
Q ss_pred CceeEEEEEEcccCC-------CcccEEEEccC-CCceEEEEEEE
Q 009741 89 STVLGSVIVTVESEG-------QTGAVWYTLDS-PSGQVCLHIKT 125 (527)
Q Consensus 89 d~~iG~~~i~l~~l~-------~~~~~w~~L~~-~~G~i~l~l~~ 125 (527)
|++||++.+++.++. .....|..|.. ..|++++++++
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 999999999999872 22335777744 45999888875
No 14
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=5.4e-17 Score=146.16 Aligned_cols=113 Identities=17% Similarity=0.333 Sum_probs=97.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL 92 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~i 92 (527)
.|.|+|++|++|++.+..|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37899999999999999999999999999999999999976 69999999999998654 45799999999998889999
Q ss_pred EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEEee
Q 009741 93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTIK 127 (527)
Q Consensus 93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~l~l~~~~ 127 (527)
|++.++|+++. ...++||+|.... |+|+++|.+..
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 99999999883 3358999997532 66667666663
No 15
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=1.5e-16 Score=139.41 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=91.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i 92 (527)
...|+|+|++|++|...+..|.+||||++.++++..+|++++++.+|.|||.|.|.+.+....|.|+|||++.. +|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 47899999999999999999999999999999999999999999999999999999877778899999999886 58999
Q ss_pred EEEEEEcccCCCcccEEEEcc
Q 009741 93 GSVIVTVESEGQTGAVWYTLD 113 (527)
Q Consensus 93 G~~~i~l~~l~~~~~~w~~L~ 113 (527)
|.+.++++++......|++|.
T Consensus 81 G~~~~~l~~~~~~~~~~~~l~ 101 (126)
T cd04046 81 GQATLSADPNDSQTLRTLPLR 101 (126)
T ss_pred EEEEEecccCCCcCceEEEcc
Confidence 999999998876677899995
No 16
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=8.6e-17 Score=139.93 Aligned_cols=109 Identities=25% Similarity=0.437 Sum_probs=94.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS 94 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~ 94 (527)
|.|+|++|++|++++..|.+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|.|||++..+++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999999999999999997654 59999999999999999999987766789999999999999999999
Q ss_pred EEEEcccCC---CcccEEEEccCC------CceEEEEEE
Q 009741 95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK 124 (527)
Q Consensus 95 ~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~l~ 124 (527)
+.+++..+. ...+.|++|.+. .|++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999998873 236789999752 366655543
No 17
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.72 E-value=8.2e-17 Score=139.65 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~ 90 (527)
.|+|+|++|++|+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 378999999999999888999999999985 3567899999999999999999998653 45699999999998 899
Q ss_pred eeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEEe
Q 009741 91 VLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI 126 (527)
Q Consensus 91 ~iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~l~l~~~ 126 (527)
+||++.++++++ +.....|++|.++ .|++.+++.++
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 999999999998 4567789999763 57777777654
No 18
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.72 E-value=9.3e-17 Score=139.55 Aligned_cols=111 Identities=24% Similarity=0.465 Sum_probs=97.1
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCC
Q 009741 14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII 86 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~ 86 (527)
|.|.|+|++|++|+..+. .|.+||||++.+++...+|++++++.+|.|+|+|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998875 3689999999999988999999999999999999999865 456899999999987
Q ss_pred CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEE
Q 009741 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT 125 (527)
Q Consensus 87 ~~d~~iG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~l~~ 125 (527)
++++||++.+++.++ ....+.||+|.+ ..|+++++++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999988 444679999975 57998887654
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=1.2e-16 Score=139.34 Aligned_cols=99 Identities=29% Similarity=0.592 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS 94 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG~ 94 (527)
|+|+|++|++|+.++..+.+||||.+++++...+|++++++.||.|||+|.|.+... ...|.|+|||++..+++++||+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 789999999999999888999999999998889999999999999999999998664 4679999999999999999999
Q ss_pred EEEEcccC--CCcccEEEEccC
Q 009741 95 VIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 95 ~~i~l~~l--~~~~~~w~~L~~ 114 (527)
+.+++.++ ......||.|.+
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 82 VVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEHHHcccCCCCCCEEECCC
Confidence 99999998 345688999976
No 20
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=1e-16 Score=140.46 Aligned_cols=109 Identities=23% Similarity=0.420 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG 93 (527)
|.|+|++|++|+. ..|.+||||++.++. ...+|+++.+++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 678999999999973 567999999999999999999999765678999999999998999999
Q ss_pred EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEe
Q 009741 94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI 126 (527)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~ 126 (527)
++.+++.++ ......|++|.++ .|++.+++.+.
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 999999997 4456789999754 24555554443
No 21
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.72 E-value=4.3e-17 Score=138.95 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=86.1
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (527)
Q Consensus 10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d 82 (527)
.+..+.|+|+|++|++|+ ..|.+||||.+++.. .+++|++.++++||.|||+|.|++.. ....|.|+|||
T Consensus 10 ~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 10 DKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 456799999999999998 246799999999853 46689999999999999999999864 24569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009741 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L 112 (527)
+|.++++++||++.++++++ ....+.|.+|
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999999976 6677788765
No 22
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.72 E-value=5.3e-17 Score=141.33 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEe-cC---CCcEEEEEEEEc
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYDW 83 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~d~ 83 (527)
.+.|.|.|++|++|++.+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+ .. ....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 8999999999985 3467899999999999999999986 22 246799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009741 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L 112 (527)
+..+++++||++.++|.++ ......||+|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999998 4446789998
No 23
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.5e-16 Score=139.65 Aligned_cols=111 Identities=29% Similarity=0.524 Sum_probs=95.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC--------
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-------- 86 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~-------- 86 (527)
.|+|+|++|++|+..+..|.+||||++.++....+|+++.++++|.|||+|.|.+..+...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999999999999999999998888899999999999999999999876667899999999853
Q ss_pred ---CCCceeEEEEEEcccCCCcccEEEEccCCCc--eEEEEEEE
Q 009741 87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPSG--QVCLHIKT 125 (527)
Q Consensus 87 ---~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G--~i~l~l~~ 125 (527)
+++++||++.+++.++......||.|.++.+ .+++.|.+
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEE
Confidence 4689999999999999777789999986432 34555443
No 24
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=1.4e-16 Score=137.01 Aligned_cols=104 Identities=23% Similarity=0.423 Sum_probs=88.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG 93 (527)
+.|.|+|++|++|..++ ..||||++.+++++.+|++.+++ ||.|||.|.|.+.+....|.|+|||++.+ .|++||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 57899999999997654 45899999999999999999884 99999999999988777799999999965 899999
Q ss_pred EEEEEcccC----CCcccEEEEccC----CCceEEEE
Q 009741 94 SVIVTVESE----GQTGAVWYTLDS----PSGQVCLH 122 (527)
Q Consensus 94 ~~~i~l~~l----~~~~~~w~~L~~----~~G~i~l~ 122 (527)
++.|+|+++ .....+||+|.+ +.|++.+.
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~ 113 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT 113 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence 999999998 233478999986 45665443
No 25
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=1.5e-16 Score=141.87 Aligned_cols=103 Identities=16% Similarity=0.287 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEE-EcCC
Q 009741 13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI 85 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~-d~d~ 85 (527)
.+.|.|+|++|+||++.+ ..|.+||||++++.. .+++|+++++++||.|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 578999999999999864 578899999999832 367899999999999999999999855678999999 5788
Q ss_pred CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009741 86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (527)
Q Consensus 86 ~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (527)
++++++||++.|+|+.+ ......||+|.++
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 88899999999999998 4556789999863
No 26
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.70 E-value=1.6e-16 Score=138.03 Aligned_cols=105 Identities=23% Similarity=0.430 Sum_probs=89.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS 94 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~iG~ 94 (527)
|.|+|++|++|+.+ .+||||.+.++....+|++++++.||.|||+|.|.+.. ....|.|+|||++.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 78999999999888899999999999999999999866 356799999999987 7899999
Q ss_pred EEEEcccCCC-------cccEEEEccCCC-----ceEEEEEEE
Q 009741 95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT 125 (527)
Q Consensus 95 ~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~l~l~~ 125 (527)
+.++++++.. ....||+|.+.. |+|++.|.+
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999832 235899997643 666666654
No 27
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.3e-16 Score=137.64 Aligned_cols=99 Identities=15% Similarity=0.304 Sum_probs=84.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eEEEeeeecCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~--~~~~T~~~~~t~nP~W~e~f~f~v~~~----~~~L~~~V~d~ 83 (527)
.|+|+|++|++|+..+ .|.+||||.+++. . ++++|+++.+++||.|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999888 5999999999972 2 345899999999999999999998632 23499999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
+..+++++||++.+++.++ +.....|++|.+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9888899999999999998 445678999975
No 28
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=7.2e-16 Score=136.78 Aligned_cols=114 Identities=19% Similarity=0.416 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC----------CCcEEEEEEEEc
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW 83 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~----------~~~~L~~~V~d~ 83 (527)
+.|+|+|++|++|++++..|.+||||++.+++...+|+++++++||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999997421 124699999999
Q ss_pred CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEEee
Q 009741 84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK 127 (527)
Q Consensus 84 d~~~~d~~iG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~l~l~~~~ 127 (527)
+..++|++||++.+ ++..+ .....+|++|.. ..|+|.+.+++..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence 99999999999986 33333 246679999974 2477777776654
No 29
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=3.6e-16 Score=138.32 Aligned_cols=100 Identities=23% Similarity=0.391 Sum_probs=88.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~ 87 (527)
.|+|+|++|++|+..+..|.+||||++.+.+. ..+|++++++.||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 47899999999999998999999999998654 46899999999999999999998766678999999999999
Q ss_pred CCceeEEEEEEcccCCC--------cccEEEEccC
Q 009741 88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDS 114 (527)
Q Consensus 88 ~d~~iG~~~i~l~~l~~--------~~~~w~~L~~ 114 (527)
++++||++.+++.++.. ....||+|.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~ 115 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence 99999999999999821 2358999975
No 30
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.69 E-value=2.5e-16 Score=137.82 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=88.8
Q ss_pred CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~ 81 (527)
...+.|.|+|++|++|++++.. |.+||||++++. ..+++|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 3457899999999999999875 899999999983 234689999999999999999999853 2457999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~ 113 (527)
|++.++++++||++.++|.++ ......||+|.
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 999999999999999999998 44567899984
No 31
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=8.3e-16 Score=134.70 Aligned_cols=113 Identities=25% Similarity=0.472 Sum_probs=97.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS 89 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d 89 (527)
+.|+|+|++|++|+..+..+.+||||.+.+.. ...+|++++++.||.|||+|.|.+... ...|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 46899999999999999999999999998764 356899999999999999999998764 56799999999998899
Q ss_pred ceeEEEEEEcccC--C---CcccEEEEccCCCceEEEEEEEee
Q 009741 90 TVLGSVIVTVESE--G---QTGAVWYTLDSPSGQVCLHIKTIK 127 (527)
Q Consensus 90 ~~iG~~~i~l~~l--~---~~~~~w~~L~~~~G~i~l~l~~~~ 127 (527)
++||++.++|.++ . ...+.|++|.+ .|++++.|.+..
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence 9999999999875 2 24568999986 799888887764
No 32
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=9.8e-16 Score=135.42 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=98.8
Q ss_pred ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCCcEEEEEEE
Q 009741 13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~ 81 (527)
.|.|+|+|++|++|++.+.. +.+||||++.++++. .+|++++++.+|.|||+|.|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 47899999999999988863 679999999998765 589999999999999999999974 678999999
Q ss_pred EcCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEEee
Q 009741 82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK 127 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l~----~~~~~w~~L~~~~G~i~l~l~~~~ 127 (527)
|++..+++++||++.++|+++. ...+.|++|.+ .|++++++.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence 9998889999999999999873 34688999985 799999888764
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.68 E-value=3.8e-16 Score=136.56 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=88.7
Q ss_pred CCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~ 81 (527)
+..+.|.|.|++|++|++.+. .|.+||||++++. ..+++|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 456889999999999998875 5789999999974 235689999999999999999999854 2457999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~ 113 (527)
|++..+++++||++.++|..+ ......|++|.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999999999999999998 45568899983
No 34
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=9.6e-16 Score=139.43 Aligned_cols=112 Identities=20% Similarity=0.383 Sum_probs=93.9
Q ss_pred ceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeecCCCCCee
Q 009741 13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW 61 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W 61 (527)
.|.|.|+|++|++|+.+| ..|.+||||.+.+++.. .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 488999999999999987 35678999999998755 59999999999999
Q ss_pred ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEE
Q 009741 62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT 125 (527)
Q Consensus 62 ~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~ 125 (527)
||+|.|.+......|.|.|||++..+ +++||++.++++++ +...+.|++|.+. .|+|++.+++
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998776778999999999875 57999999999998 5567799999542 2456666554
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=3.7e-16 Score=140.09 Aligned_cols=99 Identities=21% Similarity=0.384 Sum_probs=85.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEec---------------C-CC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP 73 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~---------------~-~~ 73 (527)
.|.|+|++|++|+. ..|.+||||++.+.. ..++|+++++++||.|||+|.|.+. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999988 578999999999865 5678999999999999999999984 1 12
Q ss_pred cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 009741 74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP 115 (527)
Q Consensus 74 ~~L~~~V~d~d~~~~d~~iG~~~i~l~~l~---~~~~~w~~L~~~ 115 (527)
..|.|.|||++..++++|||++.|++..+. .....||+|.++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 459999999999889999999999999994 346889999764
No 36
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.67 E-value=2e-15 Score=132.26 Aligned_cols=110 Identities=22% Similarity=0.343 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCC-cEEEEEEEEcCCCCCCce
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~~~V~d~d~~~~d~~ 91 (527)
..|+|+|++|++|++. +.+||||.+.+++.. .+|++ +++.||.|||+|.|.+..+. ..|.|.|||++..+++++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 4699999999999874 478999999998644 57887 46899999999999865433 569999999999999999
Q ss_pred eEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEee
Q 009741 92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (527)
Q Consensus 92 iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~ 127 (527)
||++.++|..+ +...+.||+|.+. .|+|++.+++..
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999988 4456789999753 288888888764
No 37
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=5.4e-16 Score=131.37 Aligned_cols=97 Identities=26% Similarity=0.320 Sum_probs=87.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG 93 (527)
.|.|+|++|++|+..+..+.+||||+++++++.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 3789999999999998889999999999999999999999999999999999999764 5679999999886 78999
Q ss_pred EEEEEcccCC----CcccEEEEccC
Q 009741 94 SVIVTVESEG----QTGAVWYTLDS 114 (527)
Q Consensus 94 ~~~i~l~~l~----~~~~~w~~L~~ 114 (527)
++.++|.++. ...+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999882 24678999975
No 38
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.67 E-value=4.2e-16 Score=136.63 Aligned_cols=103 Identities=18% Similarity=0.376 Sum_probs=88.5
Q ss_pred CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~ 81 (527)
...+.|.|+|++|+||++++.. |.+||||++++. ..+++|+++++++||.|||+|.|.+... ...|.+.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 4568999999999999999874 999999999974 2366899999999999999999998542 457999999
Q ss_pred EcCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 009741 82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD 113 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l~-----~~~~~w~~L~ 113 (527)
|++.++++++||++.|+|.++. .....||+|.
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9999999999999999999882 2456899983
No 39
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.67 E-value=6.4e-16 Score=135.04 Aligned_cols=103 Identities=22% Similarity=0.418 Sum_probs=91.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD 84 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d 84 (527)
+..+.|.|+|++|++|++.+..|.+||||++.+. ....+|++++++.||.|+|+|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 4568999999999999999999999999999983 3457899999999999999999997642 457999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (527)
Q Consensus 85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~ 113 (527)
.++++++||++.++++++ ....+.||+|.
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999998 45678899985
No 40
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.67 E-value=8.9e-16 Score=134.12 Aligned_cols=103 Identities=23% Similarity=0.412 Sum_probs=90.4
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD 84 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d 84 (527)
...+.|.|+|++|++|++.+..+.+||||++.+. ...++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 3457899999999999999989999999999974 245689999999999999999999754 2457999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (527)
Q Consensus 85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~ 113 (527)
.++++++||++.++++++ +...+.|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999999999999999998 56678999985
No 41
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=7.1e-16 Score=134.86 Aligned_cols=103 Identities=21% Similarity=0.376 Sum_probs=89.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~ 81 (527)
...+.|.|+|++|++|+..+..+.+||||++.+.. ..++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 45688999999999999999889999999999853 46689999999999999999998533 2467999999
Q ss_pred EcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009741 82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L~ 113 (527)
|++..+++++||++.++|.+. ......||+|+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 999998999999999999984 44457899984
No 42
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.66 E-value=2.1e-15 Score=131.53 Aligned_cols=110 Identities=24% Similarity=0.347 Sum_probs=92.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL 92 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~--d~~i 92 (527)
|+|+|++|++|+.++..+.+||||++.++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++..++ +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999999999999999999996 667899999999999999999999976 7789999999998875 5899
Q ss_pred EEEEEEcccCC---CcccEEEEccCC----CceEEEEEEEe
Q 009741 93 GSVIVTVESEG---QTGAVWYTLDSP----SGQVCLHIKTI 126 (527)
Q Consensus 93 G~~~i~l~~l~---~~~~~w~~L~~~----~G~i~l~l~~~ 126 (527)
|++.+++.++. .....|++|.+. .|.+.+.|.+.
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~ 121 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVS 121 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEE
Confidence 99999999982 224679999542 34455555544
No 43
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=4.9e-16 Score=133.00 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=86.7
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 009741 14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI 85 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~d~d~ 85 (527)
|.|+|+|++|++|+..+.. +.+||||++.+. ....+|+++++++||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 899999999974 345799999999999999999998754 24679999999999
Q ss_pred CCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741 86 IWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (527)
Q Consensus 86 ~~~d~~iG~~~i~l~~l~~~~~~w~~L~ 113 (527)
.++|++||++.+++.++. ....|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI-EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence 999999999999999995 346788875
No 44
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.66 E-value=6.1e-16 Score=132.21 Aligned_cols=98 Identities=21% Similarity=0.389 Sum_probs=87.4
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCee-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 009741 16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST 90 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W-~e~f~f~v~~~---~~~L~~~V~d~d~~~~d~ 90 (527)
|.|+|++|++|+.++. .|.+||||++.+++..++|+++++++||.| ||+|.|.+... ...|.|+|||++..++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999999884 788999999999998899999999999999 99999998653 367999999999999999
Q ss_pred eeEEEEEEcccCCC-----cccEEEEcc
Q 009741 91 VLGSVIVTVESEGQ-----TGAVWYTLD 113 (527)
Q Consensus 91 ~iG~~~i~l~~l~~-----~~~~w~~L~ 113 (527)
+||++.+++.++.. ....||+|.
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999832 367899985
No 45
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.66 E-value=8e-16 Score=133.81 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=89.0
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009741 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (527)
Q Consensus 10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~------~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V 80 (527)
.+..+.|.|+|++|+||++.+..+.+||||++++- ..+++|++++++.||.|||+|.|++.. ....|.|+|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 35568899999999999999888899999999963 246789999999999999999999864 356799999
Q ss_pred EEcCCCCCCceeEEEEEEcccC---CCcccEEEEc
Q 009741 81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL 112 (527)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~l---~~~~~~w~~L 112 (527)
|+++..+++++||++.|+|+++ ......||.|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999999999999988 2346779876
No 46
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=1.2e-15 Score=129.80 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=80.0
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCCC
Q 009741 14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDIIW 87 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~~~V~d~d~~~ 87 (527)
|+|.|+|++|++|++.+.. +.+||||++.++.+.++|+++++++||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987642 3589999999998889999999999999999999997542 346999999999999
Q ss_pred CCceeEEEEEEcccC
Q 009741 88 KSTVLGSVIVTVESE 102 (527)
Q Consensus 88 ~d~~iG~~~i~l~~l 102 (527)
+|++||++.++|+++
T Consensus 81 ~dd~IG~~~l~L~~l 95 (108)
T cd04039 81 FNDYVATGSLSVQEL 95 (108)
T ss_pred CCcceEEEEEEHHHH
Confidence 999999999999998
No 47
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=2.6e-15 Score=130.28 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=90.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i 92 (527)
|.|.|+|++|++|++.+..+.+||||++.+++ ...+|++++++.+|.|||.|.|.+..+.+.|.|+|||++..+++++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 67999999999999999899999999999976 45789999999999999999999877678899999999999999999
Q ss_pred EEEEEEcccC-CCcccEEEEccC
Q 009741 93 GSVIVTVESE-GQTGAVWYTLDS 114 (527)
Q Consensus 93 G~~~i~l~~l-~~~~~~w~~L~~ 114 (527)
|++.+++.++ ....+.||.|..
T Consensus 81 G~~~~~l~~l~~~~~~~~~~~~~ 103 (120)
T cd04045 81 GSVEINVSDLIKKNEDGKYVEYD 103 (120)
T ss_pred eEEEEeHHHhhCCCCCceEEecC
Confidence 9999999998 456678888864
No 48
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=2.3e-15 Score=131.65 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=90.3
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEEEc
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW 83 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~d~ 83 (527)
...+.|.|+|++|++|+..+..+.+||||++.+ +.+..+|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 456889999999999999998999999999998 3456799999999999999999997422 235699999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
+..+++++||++.+++.++ ......|+.|.+
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 9999999999999999998 456788999964
No 49
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=9.6e-16 Score=132.72 Aligned_cols=100 Identities=30% Similarity=0.459 Sum_probs=85.2
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 009741 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~~~V~d~d 84 (527)
..+.|.|+|++|++|++++ .|.+||||++++.. .+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4578999999999999998 88999999999852 35689999999999999999999754 2356899999999
Q ss_pred CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 009741 85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL 112 (527)
Q Consensus 85 ~~~-~d~~iG~~~i~l~~l--~~~~~~w~~L 112 (527)
..+ .+++||++.+++.++ +.....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 875 478999999999998 4445789986
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=2.1e-15 Score=132.45 Aligned_cols=105 Identities=17% Similarity=0.312 Sum_probs=88.0
Q ss_pred CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009741 10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY 81 (527)
Q Consensus 10 ~~~~g~L~V~vi~A~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~ 81 (527)
....+.|+|+|++|++|++.+.. +.+||||++.+. .++.+|+++++++||.|||+|.|. +.. ....|.|+||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 34568999999999999998875 899999999874 345689999999999999999994 432 2346999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--C--CcccEEEEccC
Q 009741 82 DWDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS 114 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l--~--~~~~~w~~L~~ 114 (527)
|++.++++++||++.++|+++ . .....|.+|++
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 999999999999999999998 2 44567988864
No 51
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=2.6e-15 Score=131.03 Aligned_cols=113 Identities=20% Similarity=0.374 Sum_probs=93.2
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009741 14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST 90 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~ 90 (527)
|.|.|+|++|++|+..+. .+.+||||++.++. ...+|+++.++.+|.|||.|.|.+......|.|+|||++..++|+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 789999999999987653 56799999999987 678999999999999999999998866788999999999988999
Q ss_pred eeEEEEEEcccCC--Cccc-EEEEccC---CCceEEEEEEEe
Q 009741 91 VLGSVIVTVESEG--QTGA-VWYTLDS---PSGQVCLHIKTI 126 (527)
Q Consensus 91 ~iG~~~i~l~~l~--~~~~-~w~~L~~---~~G~i~l~l~~~ 126 (527)
+||.+.+++.++. .... .|+.|.. ..|+|++.|++.
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF 123 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence 9999999999982 2222 3555542 247777777664
No 52
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=2.7e-15 Score=131.10 Aligned_cols=102 Identities=26% Similarity=0.455 Sum_probs=91.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK 88 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~f~v~~~----~~~L~~~V~d~d~~~~ 88 (527)
|.|.|+|++|++|+..+..+.+||||++.++....+|+++.+ +.||.|||+|.|.+..+ ...|.|+|||++..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 679999999999999998899999999999988889998875 89999999999998775 4679999999999889
Q ss_pred CceeEEEEEEcccC--CCcccEEEEccCC
Q 009741 89 STVLGSVIVTVESE--GQTGAVWYTLDSP 115 (527)
Q Consensus 89 d~~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (527)
+++||++.+++.++ ....+.|+.|.++
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999998 4567889999873
No 53
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.63 E-value=3.7e-15 Score=129.91 Aligned_cols=102 Identities=20% Similarity=0.372 Sum_probs=88.6
Q ss_pred CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~ 81 (527)
...+.|.|+|++|++|+..+ ..+.+||||++.+.. ...+|++++++.+|.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45688999999999999988 788999999998731 457899999999999999999997642 457999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009741 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L 112 (527)
|++..+++++||++.++|+++ +.....||+|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999998 5556889987
No 54
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.9e-15 Score=132.28 Aligned_cols=110 Identities=23% Similarity=0.415 Sum_probs=94.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeec-CCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~W~e~f~f~v~~~-----~~~L~~~V~d~d~~~ 87 (527)
.|+|+|++|++|+..+..+.+||||+++++. ...+|+++. ++.||.|||.|.|.+... ...|.|+|||++..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4789999999999999889999999999987 778899985 589999999999998765 567999999999988
Q ss_pred CCceeEEEEEEcccC--CCc-----ccEEEEccCCCceEEEEEE
Q 009741 88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHIK 124 (527)
Q Consensus 88 ~d~~iG~~~i~l~~l--~~~-----~~~w~~L~~~~G~i~l~l~ 124 (527)
++++||++.+++.++ ... ...||+|..+.|+..+.|.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 999999999999998 222 3689999876677666654
No 55
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.63 E-value=3.8e-15 Score=130.63 Aligned_cols=103 Identities=19% Similarity=0.319 Sum_probs=89.5
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d 82 (527)
+..+.|.|+|++|++|+..+..+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.|.|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 4568899999999999999988999999999984 3567999999999999999999998542 3579999999
Q ss_pred cCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 009741 83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (527)
Q Consensus 83 ~d~~--~~d~~iG~~~i~l~~l--~~~~~~w~~L~ 113 (527)
++.. +++++||++.++|.++ +.....||+|.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9875 6899999999999998 45567899883
No 56
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.63 E-value=4.2e-15 Score=129.62 Aligned_cols=104 Identities=20% Similarity=0.324 Sum_probs=89.7
Q ss_pred CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~ 83 (527)
...+.|.|+|++|++|+..+ ..+.+||||++++. ....+|++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 44678999999999999998 68899999999973 3456899999999999999999998642 35799999999
Q ss_pred CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
+..+++++||++.++|+++ ......|++|++
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 9988899999999999998 445578999964
No 57
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.62 E-value=4e-15 Score=132.99 Aligned_cols=88 Identities=25% Similarity=0.468 Sum_probs=84.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG 93 (527)
|.|.|+|++|++|+..+. +.+||||++.++.+..+|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999998887 8999999999999999999999999999999999999888888999999999999999999
Q ss_pred EEEEEcccC
Q 009741 94 SVIVTVESE 102 (527)
Q Consensus 94 ~~~i~l~~l 102 (527)
++.+++.++
T Consensus 81 ~a~i~l~~l 89 (145)
T cd04038 81 EAEIDLEPL 89 (145)
T ss_pred EEEEEHHHh
Confidence 999999998
No 58
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=5e-15 Score=129.33 Aligned_cols=104 Identities=19% Similarity=0.345 Sum_probs=89.0
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 009741 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD 82 (527)
Q Consensus 10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~d 82 (527)
......|.|+|++|+||++.+..|.+||||.+.+. .++++|++.++ .||.|||+|.|. +.. ....|.|+|||
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 34567899999999999999988999999998762 35668998887 999999999998 543 24569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
++.++++++||++.++|+.+ ......|++|+|
T Consensus 91 ~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 91 VERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 99999999999999999998 456778999974
No 59
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.62 E-value=1.1e-15 Score=135.39 Aligned_cols=107 Identities=18% Similarity=0.305 Sum_probs=92.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d 82 (527)
...+.|.|+|++|++|++.+..|.+||||++.+.. ...+|+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 45689999999999999999899999999999742 356899999999999999999997642 4579999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (527)
++..+++++||++.+++...+.....|+++....|
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPD 124 (133)
T ss_pred CCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCC
Confidence 99988999999999999987767788998864333
No 60
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=5.1e-15 Score=126.71 Aligned_cols=97 Identities=24% Similarity=0.487 Sum_probs=85.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-----~~~L~~~V~d~d~~~ 87 (527)
-+.|+|+|++|++|+ .|.+||||++.+++++++|++++++.||.|||+|.|.+..+ ...|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 488999999999997 57899999999999999999999999999999999997543 356999999999998
Q ss_pred CCceeEEEEEEcccCC-----CcccEEEEcc
Q 009741 88 KSTVLGSVIVTVESEG-----QTGAVWYTLD 113 (527)
Q Consensus 88 ~d~~iG~~~i~l~~l~-----~~~~~w~~L~ 113 (527)
++++||++.++|+.+. .....|++|.
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 9999999999999882 2356799985
No 61
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.61 E-value=5.1e-15 Score=133.13 Aligned_cols=101 Identities=26% Similarity=0.571 Sum_probs=88.2
Q ss_pred CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeeeecCCCC
Q 009741 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----------------------------KRFSSMVPGSRY 58 (527)
Q Consensus 8 ~~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-----------------------------~~~T~~~~~t~n 58 (527)
...+..+.|.|+|++|++|.++|..|.+||||++.+... ..+|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 345779999999999999999999999999999998521 257999999999
Q ss_pred CeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 009741 59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL 112 (527)
Q Consensus 59 P~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L 112 (527)
|.|||+|.|.+... ...|.|+|||++ +++||++.++++++ ....+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 99999999998653 567999999997 78999999999998 4567899987
No 62
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=1.5e-14 Score=127.00 Aligned_cols=93 Identities=22% Similarity=0.362 Sum_probs=83.2
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 009741 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI 96 (527)
Q Consensus 20 vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~~~d~~iG~~~ 96 (527)
|++|++|+. ..|.+||||++.++....+|++++++.||.|||+|.|.+.. ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 68899999999999888999999999999999999999854 3577999999999999999999999
Q ss_pred EEcccC--CCcccEEEEccC
Q 009741 97 VTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 97 i~l~~l--~~~~~~w~~L~~ 114 (527)
++++++ +.....|++|..
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~ 99 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLD 99 (127)
T ss_pred EEhhHcccCCceEEEEeCcC
Confidence 999998 445577999964
No 63
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.61 E-value=5.6e-15 Score=134.92 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=89.9
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~----~~~~L~~~V~ 81 (527)
...+.|.|+|++|++|++.+..+.+||||.+.+. ...++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 3679999999999999999989999999999872 356789999999999999999998532 2356999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
|++.++++++||++.+.+..+ ....+.|+.|.+
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999998999999999999988 445688998864
No 64
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=4.9e-15 Score=133.05 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=85.4
Q ss_pred EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC--CCcEEEE
Q 009741 15 LIKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIV 78 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g--------------~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~~ 78 (527)
.|.|+|++|++|+.+|..+ .+||||++.+++.+.+|++++++.||.|||+|.|.+.. ....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999988554 68999999999999999999999999999999999643 3568999
Q ss_pred EEEEcCCCCCCceeEEEEEEcccC-CCcc--------cEEEEccC
Q 009741 79 TIYDWDIIWKSTVLGSVIVTVESE-GQTG--------AVWYTLDS 114 (527)
Q Consensus 79 ~V~d~d~~~~d~~iG~~~i~l~~l-~~~~--------~~w~~L~~ 114 (527)
+|||+|..++|++||++.+++.++ .... ..|+.|.+
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999999999999999999987 3333 36777743
No 65
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.60 E-value=8.9e-15 Score=127.54 Aligned_cols=94 Identities=19% Similarity=0.368 Sum_probs=83.0
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCC
Q 009741 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDII 86 (527)
Q Consensus 9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~--~~~~~L~~~V~d~d~~ 86 (527)
.....+.|.|+|++|++|+. +..+.+||||+|.++++.++|++++++.||.|||+|.|... .....|.|+|||++..
T Consensus 23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG 101 (127)
T ss_pred CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence 34557899999999999974 67789999999999988899999999999999999999743 2467899999999999
Q ss_pred CCCceeEEEEEEcccCC
Q 009741 87 WKSTVLGSVIVTVESEG 103 (527)
Q Consensus 87 ~~d~~iG~~~i~l~~l~ 103 (527)
++|++||++.++|....
T Consensus 102 s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCeeEEEEEEecCCc
Confidence 99999999999998764
No 66
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.59 E-value=2.2e-15 Score=133.39 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=89.1
Q ss_pred CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009741 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (527)
Q Consensus 10 ~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~ 81 (527)
.+....|.|+|++|++|++.+..|.+||||++++.. .+.+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 345678999999999999999899999999999732 24579999999999999999999864 2456999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009741 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~ 114 (527)
|++..+++++||++.+.....+...+.|..+..
T Consensus 91 ~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~ 123 (136)
T cd08406 91 ESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLA 123 (136)
T ss_pred eCCCCCCCCeeEEEEECCCCCChhHHHHHHHHH
Confidence 999999999999999987776666777877754
No 67
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.59 E-value=2e-15 Score=117.55 Aligned_cols=66 Identities=30% Similarity=0.651 Sum_probs=48.8
Q ss_pred ccccccccCcccceeEeEEEeeee-ccccceeEEeecceEEEEeccCCcee-EEEEecccceeeeecc
Q 009741 164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (527)
Q Consensus 164 ~f~~~F~lp~~e~l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~ 229 (527)
.|++.|+||++|.|+.+|.|+|.. +++.+|+||||.+++||+|+.+|..+ +++|||.||.+|+|.+
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 589999999999999999999999 89999999999999999999999888 9999999999999864
No 68
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=8.9e-15 Score=129.92 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=87.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeeeecCCCCCeeccEEEEEecCC----------------CcE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ 75 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~f~v~~~----------------~~~ 75 (527)
|.|+|++|++|+.+ ..|.+||||++++. ...++|++++++.+|.|+|+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999987 6778999999999999999999997543 456
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009741 76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (527)
Q Consensus 76 L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~ 115 (527)
|.|+|||++..++++|||++.+++.++ ......||+|.++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999988999999999999997 4456899999863
No 69
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1.4e-14 Score=124.70 Aligned_cols=102 Identities=26% Similarity=0.483 Sum_probs=89.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~iG 93 (527)
|+|.|++|++|+..+..+.+||||++.+.+ ...+|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999998889999999999864 44699999999999999999999865 4577999999999988999999
Q ss_pred EEEEEcccC--CCcccEEEEccCCCc
Q 009741 94 SVIVTVESE--GQTGAVWYTLDSPSG 117 (527)
Q Consensus 94 ~~~i~l~~l--~~~~~~w~~L~~~~G 117 (527)
++.+++.++ +...+.|++|.+++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 999999997 456788999987544
No 70
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.59 E-value=3.9e-15 Score=132.30 Aligned_cols=108 Identities=19% Similarity=0.391 Sum_probs=91.6
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d 82 (527)
...+.|.|+|++|++|+..+..|.+||||++.+.. ...+|+++++++||.|+|+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 34678999999999999999999999999999732 24579999999999999999999853 34569999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (527)
++..+++++||++.+++...+.....|++|....|+
T Consensus 92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR 127 (136)
T ss_pred CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence 999999999999999999876667789998654444
No 71
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.57 E-value=4e-15 Score=132.21 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=90.6
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009741 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI 80 (527)
Q Consensus 9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V 80 (527)
+.+..+.|.|+|++|++|+.++..|.+||||++.+. . ..++|+++++++||.|||+|.|.+... ...|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 445678999999999999999999999999999984 2 345799999999999999999997542 24699999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009741 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (527)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~ 114 (527)
||++.++++++||++.+++...+.....|+++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccCChHHHHHHHHHh
Confidence 9999999999999999999887666677888754
No 72
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=5.2e-14 Score=121.51 Aligned_cols=105 Identities=29% Similarity=0.433 Sum_probs=84.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcCCCCCCce
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d~~~~d~~ 91 (527)
|.|+|++|++|+.. +.+||||.+++++.. ++|+++++ .+|.|||+|.|.+... ...|.+.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 789999999998754 68999988 9999999999998662 3458888999887766777
Q ss_pred eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 009741 92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (527)
Q Consensus 92 iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~ 124 (527)
+|.+.+.....+...+.||+|.+. .|+|++.+.
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 887776665557777899999763 366666554
No 73
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.56 E-value=2.8e-14 Score=125.92 Aligned_cols=105 Identities=27% Similarity=0.493 Sum_probs=91.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCC
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII 86 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~--~~~L~~~V~d~d~~ 86 (527)
+.|.|+|++|++|+..+..+.+||||.+.+. ...++|++++++.+|.|||+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7899999999999998888899999999985 2567899999999999999999997653 46799999999998
Q ss_pred CCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 009741 87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (527)
Q Consensus 87 ~~d~~iG~~~i~l~~l-~~~~~~w~~L~~-~~G~ 118 (527)
+++++||++.+++.++ ......||+|.. +.|+
T Consensus 93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~ 126 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE 126 (131)
T ss_pred CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence 8999999999999998 446778999964 3454
No 74
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.56 E-value=1e-14 Score=129.13 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=86.5
Q ss_pred CCCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEE
Q 009741 10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVT 79 (527)
Q Consensus 10 ~~~~g~L~V~vi~A~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~ 79 (527)
.+..+.|.|.|++|+||++++. .+.+||||++++.. .+++|+++++++||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 3456889999999999999883 35599999999743 245899999999999999999998642 4569999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (527)
Q Consensus 80 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~ 113 (527)
|||+|.++++++||++.+.+...+.....|..+.
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml 124 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEML 124 (138)
T ss_pred EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHH
Confidence 9999999999999999999987665566666663
No 75
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.55 E-value=2.1e-15 Score=149.66 Aligned_cols=106 Identities=25% Similarity=0.494 Sum_probs=92.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecC--CCcEEEEEEEEcCC
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI 85 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~--~~~~L~~~V~d~d~ 85 (527)
...|+|.|.+|+||.++|.+|.+||||.+.+- ..+++|++++.++||.|||+|.|.+.+ .+++|.|+|||||.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 45688999999999999999999999999972 345689999999999999999999754 36679999999999
Q ss_pred CCCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 009741 86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (527)
Q Consensus 86 ~~~d~~iG~~~i~l~~l-~~~~~~w~~L~~-~~G~ 118 (527)
.+++||+|...+.++++ ..+.+.||.|.. ..|+
T Consensus 259 TsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGE 293 (683)
T ss_pred cccccccceecccHHHHhhcchhhHHHHhhhhcCc
Confidence 99999999999999999 567789999965 3454
No 76
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.55 E-value=1.1e-13 Score=122.34 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=82.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEeeeecCCCCCee-ccEEEEEecCCCcEEEEEE
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------------EKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI 80 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~W-~e~f~f~v~~~~~~L~~~V 80 (527)
...|.+++|++|+ ++..|++||||++.+.. +.++|+++++++||.| ||+|.|.+.. ...|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4689999999998 77899999999999842 3579999999999999 9999999864 57899999
Q ss_pred EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 009741 81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP 115 (527)
Q Consensus 81 ~d~d~~~~---d~~iG~~~i~l~~l~-----~~~~~w~~L~~~ 115 (527)
||++..+. +++||++.+++.++. .....||+|..+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99875443 689999999999982 235679999753
No 77
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.55 E-value=1.2e-14 Score=129.10 Aligned_cols=105 Identities=26% Similarity=0.420 Sum_probs=89.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d 82 (527)
+..+.|.|+|++|++|+..+..|.+||||++.+. . ...+|++++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 4568899999999999999989999999999873 2 24589999999999999999999753 24579999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 009741 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP 115 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~ 115 (527)
++..+++++||++.+++...+.....|++|...
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~ 124 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSK 124 (136)
T ss_pred CCCCCCCcEeEEEEECCccCCchHHHHHHHHhC
Confidence 999999999999999999876666678777543
No 78
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.55 E-value=3.5e-14 Score=125.60 Aligned_cols=92 Identities=22% Similarity=0.419 Sum_probs=81.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeeeecCCCCCeeccEEEEEecC-----CCcEEEEE
Q 009741 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT 79 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~-----~~~~L~~~ 79 (527)
....|+|+|++|++|+..+..|.+||||++++. ....+|+++++++||.|||+|.|.+.. ....|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 457899999999999999888999999999974 346789999999999999999999754 24579999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCC
Q 009741 80 IYDWDIIWKSTVLGSVIVTVESEG 103 (527)
Q Consensus 80 V~d~d~~~~d~~iG~~~i~l~~l~ 103 (527)
|||++..+++++||++.++|+++.
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCC
Confidence 999999988999999999999983
No 79
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.54 E-value=1.7e-14 Score=127.78 Aligned_cols=107 Identities=23% Similarity=0.413 Sum_probs=89.5
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d 82 (527)
+..+.|+|+|++|++|++++..|.+||||++.+.. ...+|++++++.||.|+|+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45688999999999999999999999999999731 245899999999999999999997532 2459999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (527)
++..+++++||++.+++...+.....|+++....|
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~ 125 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNADGQGREHWNEMLANPR 125 (134)
T ss_pred CCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCC
Confidence 99999999999999998866666677888754333
No 80
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.53 E-value=2.5e-14 Score=126.88 Aligned_cols=107 Identities=21% Similarity=0.431 Sum_probs=88.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-~----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d 82 (527)
+..+.|.|+|++|++|+..+..|.+||||.+.+. + ..++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 4568899999999999999999999999999972 2 346899999999999999999998432 3469999999
Q ss_pred cCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 009741 83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG 117 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l~~-~~~~w~~L~~~~G 117 (527)
++..+++++||++.|.....+. ..++|+.|....|
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~ 126 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQR 126 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCC
Confidence 9999999999999877655543 3577888865434
No 81
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.52 E-value=2.9e-13 Score=121.60 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=88.7
Q ss_pred EEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEecCC---------CcEEEEEE
Q 009741 17 KLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVTI 80 (527)
Q Consensus 17 ~V~vi~A~~--L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~---------~~~L~~~V 80 (527)
.++|+.|++ |+..+..+.+||||++++ ..++.+|+++++|+||.|||+|.|.+... ...|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455666666 677777888999999986 24577999999999999999999998543 24599999
Q ss_pred EEcCCC-CCCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEEee
Q 009741 81 YDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTIK 127 (527)
Q Consensus 81 ~d~d~~-~~d~~iG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~l~~~~ 127 (527)
||++.+ .+|++||++.++|+.+ ......|++|.. .+|.+.+.+++..
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 999986 4799999999999999 445667999852 3477777777663
No 82
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.52 E-value=1.7e-14 Score=154.94 Aligned_cols=483 Identities=23% Similarity=0.266 Sum_probs=278.5
Q ss_pred CCCCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEc
Q 009741 5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW 83 (527)
Q Consensus 5 ~~~~~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~ 83 (527)
++.......+......+.+.++......+.++||..+..........+...+.+|.|++.+.|.-.. +-....+..++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~e 167 (590)
T KOG1032|consen 88 KGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDE 167 (590)
T ss_pred CcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeee
Confidence 3444445566666666666666665566788999999888777778888888999999999998433 223445555555
Q ss_pred CCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEEeecccCccccccCccchhcccccccccCCCcee
Q 009741 84 DII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV 158 (527)
Q Consensus 84 d~~-~~d~~iG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (527)
... .+..-.|.+...+.. .......|..|..+++... +.+.-......+.+...+++...... ..-+.+.+.+.
T Consensus 168 I~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~-~~~~~~~~~~~ 246 (590)
T KOG1032|consen 168 ITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPE-VNDDQQGNVDN 246 (590)
T ss_pred eeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCC-cCccccccccc
Confidence 432 222223433222221 2455678999988776654 33333333333333344444332111 11111234556
Q ss_pred ccCCcccccccccCcccceeEeEEEeeeeccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEE
Q 009741 159 HQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAIT 238 (527)
Q Consensus 159 ~~k~~~f~~~F~lp~~e~l~~~f~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~ 238 (527)
.+.+.++...|++|++|.+..+++|.+.+...+.|+++++....+|++.+||-.+.+..+|+++..++........+...
T Consensus 247 ~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~ 326 (590)
T KOG1032|consen 247 SQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSG 326 (590)
T ss_pred CCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCcc
Confidence 77889999999999999999999999999999999999999999999999999999999999999999988776555422
Q ss_pred EEEecCC---CCC---CCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccCchhHHhhhhhhccccCCCCCCCCcc
Q 009741 239 IILRMGA---GGH---GVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRR 312 (527)
Q Consensus 239 i~~~~~~---~~~---~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~ss~~~~~~~ 312 (527)
+..+.-+ +.+ |-+.. ...+...+.|..+... ++++.+.........+........--.+..+.+..
T Consensus 327 ~~~r~~~y~~~l~~~~gPk~t-~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~---- 398 (590)
T KOG1032|consen 327 ILLRTLSYTKGLPAKSGPKST-DCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCK---- 398 (590)
T ss_pred ceeEeccCCccCCCcCCCccc-cccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCccee----
Confidence 2332222 222 22222 1224556666555332 44444443322211110000000000000000000
Q ss_pred cccccccccCCCCCCCCCCcccccceeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEE
Q 009741 313 QAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVRE 392 (527)
Q Consensus 313 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~ 392 (527)
-.+..... -.+ .+ -...|.++.....++.++. |.-+|+ +..-...-+...+...+.-.+|+ .+..++..|.
T Consensus 399 -l~v~~~V~-~~~--~s--w~~~~~~~~~~~~k~lv~~-~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-v~~~~~~v~~ 469 (590)
T KOG1032|consen 399 -LKVSTSVE-WTK--SS--WDVPVSEIGSNTLKDLVEI-LEKLLE-NGEELAKNQEKEDELTYEGSPWE-VEKPGGTVRQ 469 (590)
T ss_pred -ecceeEEE-ecc--Cc--hhhccccccccchhhHHHH-HHHHHh-ccHHHHHhhcccccccccCCCcc-ccCCCceeee
Confidence 00000000 000 00 0000111111133344443 344454 34433333444445555566899 6666899999
Q ss_pred EEEEEecCCCCCCcceeEeEEEEEEEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEe
Q 009741 393 VAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFK 472 (527)
Q Consensus 393 ~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~ 472 (527)
..|.---..++.|....+...|.....+....+.++..+..+++|||++|.++.||. ............. .++.|.
T Consensus 470 ~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~---~~~~~~ 545 (590)
T KOG1032|consen 470 LSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTL---VWVSFR 545 (590)
T ss_pred eccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhh---HHHHHH
Confidence 998865566788888888888887776666788999999999999999999999997 2222221111112 233333
Q ss_pred ecceeeeeeehhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 009741 473 KWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTS 509 (527)
Q Consensus 473 K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l~~~~~ 509 (527)
.+.+.+..++.+..+......+.+++++...+.....
T Consensus 546 ~~~l~~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~~ 582 (590)
T KOG1032|consen 546 IEWLKDIKMEARKIKQILRNDQDLLEVLFSLLEKLSQ 582 (590)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555555544433
No 83
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.52 E-value=2.3e-13 Score=119.03 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=83.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG 93 (527)
.|.|+|++|+ |...+..+.+||||++.+++. ..+|++++++.+|.|+|.|.|.+.. ...|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence 6899999998 555566889999999999877 7899999999999999999999865 678999999999999999999
Q ss_pred EEEEEcccCC-----Cc--ccEEEEcc
Q 009741 94 SVIVTVESEG-----QT--GAVWYTLD 113 (527)
Q Consensus 94 ~~~i~l~~l~-----~~--~~~w~~L~ 113 (527)
++.++|.++. .. ...|++|.
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~ 107 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLS 107 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEE
Confidence 9999999872 11 22488885
No 84
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=6.4e-14 Score=121.64 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=81.8
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeccEEEEEec-CCCcEEEEEEEEcCC----CC
Q 009741 20 LLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----IW 87 (527)
Q Consensus 20 vi~A~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~-~~~~~L~~~V~d~d~----~~ 87 (527)
.++|++|+..+..|.+||||++.+... ..+|+++++++||.|+|+|.|.+. +....|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 488999999999999999999998654 368999999999999999999854 345679999999997 78
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 88 ~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
++++||++.+++.++ ......|++|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 999999999999998 455677888843
No 85
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.52 E-value=2.6e-14 Score=127.02 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=89.5
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEE
Q 009741 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT 79 (527)
Q Consensus 9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~ 79 (527)
+....+.|.|+|++|+||++.+..|.+||||++.+.. .+++|++++++.||.|||+|.|.+.. ....|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 3456789999999999999999899999999998732 24589999999999999999999864 24579999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCC-cccEEEEccC
Q 009741 80 IYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDS 114 (527)
Q Consensus 80 V~d~d~~~~d~~iG~~~i~l~~l~~-~~~~w~~L~~ 114 (527)
|||++.++++++||++.+++...+. ..+.|+.+..
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~ 125 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKE 125 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHh
Confidence 9999999999999999998887753 4567888854
No 86
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.52 E-value=2.3e-14 Score=126.75 Aligned_cols=107 Identities=26% Similarity=0.439 Sum_probs=92.0
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d 82 (527)
+..+.|.|+|++|++|+..+..+.+||||++.+... ..+|+++.++.+|.|||+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 345789999999999999988899999999997532 45899999999999999999998653 4679999999
Q ss_pred cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (527)
.+..+++++||++.+++++.+...+.|++|....|
T Consensus 91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~ 125 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPR 125 (134)
T ss_pred cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCC
Confidence 99988999999999999997666788999975433
No 87
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=1.2e-13 Score=120.64 Aligned_cols=89 Identities=24% Similarity=0.500 Sum_probs=79.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~ 91 (527)
+|+|.|++|++|+..+..|.+||||++.+++.. .+|+++++++||.|||+|.|.+..+ ...|.|+|||++..++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999999999999999998765 4788889999999999999997543 5679999999999999999
Q ss_pred eEEEEEEcccCC
Q 009741 92 LGSVIVTVESEG 103 (527)
Q Consensus 92 iG~~~i~l~~l~ 103 (527)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999874
No 88
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.50 E-value=5.3e-14 Score=106.68 Aligned_cols=60 Identities=35% Similarity=0.682 Sum_probs=57.0
Q ss_pred ccCcccceeEeEEEeeeeccccceeEEeecceEEEEeccCCcee-EEEEecccceeeeecc
Q 009741 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (527)
Q Consensus 170 ~lp~~e~l~~~f~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~ 229 (527)
+||++|.|+.+|.|+|.++++.+||||||++++||+|+.+|+.+ +++||+.||.+|+|..
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~ 61 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST 61 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence 47999999999999999999999999999999999999999999 9999999999999863
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=3.3e-13 Score=117.65 Aligned_cols=101 Identities=19% Similarity=0.294 Sum_probs=84.9
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY 81 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~ 81 (527)
+..+.|.|+|++|++|++.+..+.+||||++.+. ....+|++++++.||.|||+|.|. +.. ....|.|+||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 4568899999999999999888999999999873 235789999999999999999996 332 2457999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 009741 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L 112 (527)
|++.. .+++||++.++++++......|+.+
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence 99988 8899999999999996555555554
No 90
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.49 E-value=1.5e-13 Score=120.01 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=85.7
Q ss_pred CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCC-CCeeccEEEEEecCC--CcEEEEEE
Q 009741 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTI 80 (527)
Q Consensus 9 ~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~-nP~W~e~f~f~v~~~--~~~L~~~V 80 (527)
+.+..+.|+|.|++|+||++....+..||||.+.+- -.+++|+++++++ +|.|||+|.|++... ...|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 346678999999999999998666778999999862 2356899999995 699999999998643 34588999
Q ss_pred EEcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009741 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (527)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L~ 113 (527)
||++..+++++||++.+..++. +...++|.++.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~ 122 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTI 122 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCchhhhhHHHHH
Confidence 9999999999999999999875 34467787764
No 91
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.49 E-value=8.5e-13 Score=117.41 Aligned_cols=97 Identities=24% Similarity=0.284 Sum_probs=82.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW---- 87 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~---- 87 (527)
-..|.|.|++|++|++++ +|||.+.+++... ||+++.++.||.|+|.|.|....+...|.|.||..+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 357899999999998764 7999999998874 999999999999999999986555677999998765322
Q ss_pred CCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 88 KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 88 ~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
++++||.+.|++..+ +...+.||+|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 578999999999998 556789999965
No 92
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=4.4e-13 Score=114.67 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=81.4
Q ss_pred CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 009741 31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT 105 (527)
Q Consensus 31 ~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l---~~~ 105 (527)
..|.+||||.+.++++ ..+|++++++.||.|||.|.|.+.+. ...|.|.|||++.+ ++++||++.++|.++ ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 4788999999999875 46899999999999999999998764 46699999999998 899999999999987 233
Q ss_pred ccEEEEccC-CCceEEEEEEEee
Q 009741 106 GAVWYTLDS-PSGQVCLHIKTIK 127 (527)
Q Consensus 106 ~~~w~~L~~-~~G~i~l~l~~~~ 127 (527)
...|++|.+ +.|+|++++.+.+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 578999973 4688888877764
No 93
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.47 E-value=7.5e-13 Score=112.57 Aligned_cols=81 Identities=15% Similarity=0.339 Sum_probs=70.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEc-------
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW------- 83 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~------- 83 (527)
|.|+|++|+||+ +.+||||.+.++. ...+|+++.+++||.|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 579999999995 5699999998853 35799999999999999999999975 77899999998
Q ss_pred CCCCCCceeEEEEEEcccC
Q 009741 84 DIIWKSTVLGSVIVTVESE 102 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l 102 (527)
|..++|+++|.+.+.|+.-
T Consensus 75 d~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred cccCcccEEEEEEEEECHH
Confidence 4667899999999988753
No 94
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.46 E-value=1.8e-12 Score=113.67 Aligned_cols=102 Identities=23% Similarity=0.369 Sum_probs=85.5
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEeeeecCCC-CCeeccEEEEEecCCC-cEEEEEEEEc
Q 009741 14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW 83 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d--~~g~~dPyv~v~~------~~~~~~T~~~~~t~-nP~W~e~f~f~v~~~~-~~L~~~V~d~ 83 (527)
..|+|+|++|++|+..+ ..+..||||.+++ .....+|+++.++. +|.|+|+|.|.+..+. ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 47899999999999888 5789999999998 34567899988775 9999999999976543 4599999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (527)
+.. ++++||.+.++++++.. ...|++|..+.|
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~~ 113 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSKG 113 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCCC
Confidence 988 89999999999999954 357899965443
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.46 E-value=1.5e-13 Score=122.16 Aligned_cols=103 Identities=18% Similarity=0.291 Sum_probs=84.9
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d 82 (527)
+..+.|.|+|++|++|++.+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 45688999999999999988 88899999999742 35589999999999999999999853 23569999999
Q ss_pred cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
++..+++++||++.+..... +...+.|..+..
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99989999999999986543 444566777643
No 96
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.3e-13 Score=142.26 Aligned_cols=115 Identities=30% Similarity=0.511 Sum_probs=103.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC------
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------ 86 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~------ 86 (527)
...++++|++|.+|..+|..|++||||...++..+++|+++...+||+|||.|.|++++...+|++.|||.|+.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999899999999998852
Q ss_pred -----CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEEee
Q 009741 87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTIK 127 (527)
Q Consensus 87 -----~~d~~iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~l~~~~ 127 (527)
-+|+|+|++.|.+..+....+.||.|+.+ .|.|+++|.++-
T Consensus 374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEEE
Confidence 35899999999999998889999999752 388888887763
No 97
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=5.9e-13 Score=113.65 Aligned_cols=94 Identities=21% Similarity=0.374 Sum_probs=78.6
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEeeeecCCCCCeeccEEEEEec-----CCCcEEEEEEEEcCCC
Q 009741 18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDII 86 (527)
Q Consensus 18 V~vi~A~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~~~~t~nP~W~e~f~f~v~-----~~~~~L~~~V~d~d~~ 86 (527)
+-.++|++|+..+..|.+||||++++... .++|+++++++||.|+ +|.|.+. +....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 45579999999999999999999987432 4689999999999999 7888753 2256799999999999
Q ss_pred CCCceeEEEEEEcccCCCcccEEEEc
Q 009741 87 WKSTVLGSVIVTVESEGQTGAVWYTL 112 (527)
Q Consensus 87 ~~d~~iG~~~i~l~~l~~~~~~w~~L 112 (527)
++|++||++.++++++...+..++.+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 99999999999999996555555554
No 98
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.8e-12 Score=135.59 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=114.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD 84 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d 84 (527)
.....|+|+|++|++|+.++..|.+||||++++- ..+.+|++.++++||.|||+|.|.+.. ....|.+.|||.|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3456799999999999999977889999999984 355689999999999999999999642 3567999999999
Q ss_pred CCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEeecccCccccccCccchhcccccccccCCC
Q 009741 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP 155 (527)
Q Consensus 85 ~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (527)
.++++++||++.++|..+ ......|.+|.+. .|++.+.|.+.+..-. ++-. -++.+.+..
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~----ltv~-------v~kar~L~~ 312 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR----LTVV-------VIKARNLKS 312 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCe----EEEE-------EEEecCCCc
Confidence 999999999999999887 3335789999652 2588888887765211 1111 111223333
Q ss_pred ceeccCCcccccccccCcc
Q 009741 156 TVVHQKPGPLQTIFNLLPD 174 (527)
Q Consensus 156 ~~~~~k~~~f~~~F~lp~~ 174 (527)
.+..+.+++|.+..-++.+
T Consensus 313 ~~~~~~~d~~Vk~~l~~~~ 331 (421)
T KOG1028|consen 313 MDVGGLSDPYVKVTLLDGD 331 (421)
T ss_pred ccCCCCCCccEEEEEecCC
Confidence 3444566677776655544
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.43 E-value=4e-13 Score=158.69 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=97.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCC--cEEEEEEEEcCCCCC
Q 009741 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIWK 88 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~--~~L~~~V~d~d~~~~ 88 (527)
--|.|.|+|++|.+|. +..|.+||||++.++++ +.+|++++++.||.|||+|.|.+.+++ .+|+|+|||+|.+++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 4689999999999998 45789999999999966 778999999999999999999887765 679999999999855
Q ss_pred CceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEEe
Q 009741 89 STVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI 126 (527)
Q Consensus 89 d~~iG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~l~l~~~ 126 (527)
| .+|.+.|++.++ +.....||+|.+ +.|+ +.+++.|.
T Consensus 2056 d-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2056 S-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred C-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 5 899999999998 566778999974 6788 77777765
No 100
>PLN03008 Phospholipase D delta
Probab=99.42 E-value=1.6e-12 Score=141.42 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=97.8
Q ss_pred ceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-EEE
Q 009741 13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSE-KRF 49 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~ 49 (527)
.|.|.++|.+|++|+.+|. .+++||||.|.++++ ..+
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5789999999999975321 246799999999865 458
Q ss_pred eeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEE
Q 009741 50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVC 120 (527)
Q Consensus 50 T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~ 120 (527)
|+++++++||.|||+|.|.+..+...|.|+|||+|.++ +++||++.|++.++ +...+.|++|... .++|+
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~ 171 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF 171 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence 99999999999999999999877788999999999986 57999999999999 5567799999541 25777
Q ss_pred EEEEEeecccC
Q 009741 121 LHIKTIKLPVN 131 (527)
Q Consensus 121 l~l~~~~~~~~ 131 (527)
++|++.+....
T Consensus 172 v~lqf~pv~~~ 182 (868)
T PLN03008 172 IDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEcccc
Confidence 88888776544
No 101
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.27 E-value=2.8e-11 Score=97.41 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=72.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~ 91 (527)
|+|+|++|++|+..+..+..+||+++.+.. ...+|++++++.+|.|+++|.|.+.. ....|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999865 66899999999999999999999643 34559999999999988999
Q ss_pred eEEEE
Q 009741 92 LGSVI 96 (527)
Q Consensus 92 iG~~~ 96 (527)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.18 E-value=2.5e-10 Score=93.98 Aligned_cols=97 Identities=30% Similarity=0.574 Sum_probs=84.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~d~~iG 93 (527)
|.|.|++|++|......+..+|||.+.+.. ...+|.+..++.+|.|++.|.|.+.. ....|.|+||+.+..+.+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998877778899999999987 77899999999999999999999876 5677999999999888889999
Q ss_pred EEEEEcccCC---CcccEEEEc
Q 009741 94 SVIVTVESEG---QTGAVWYTL 112 (527)
Q Consensus 94 ~~~i~l~~l~---~~~~~w~~L 112 (527)
.+.+++..+. .....|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999874 455677765
No 103
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.12 E-value=7.3e-10 Score=91.54 Aligned_cols=88 Identities=24% Similarity=0.505 Sum_probs=78.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~~ 91 (527)
|.|.|++|++|......+..+|||.+.+... ..+|+++.++.+|.|+++|.|.+... ...|.|+||+.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6799999999988776678999999998764 68999999999999999999998776 7789999999998878899
Q ss_pred eEEEEEEcccCC
Q 009741 92 LGSVIVTVESEG 103 (527)
Q Consensus 92 iG~~~i~l~~l~ 103 (527)
+|.+.+++.++.
T Consensus 82 ~G~~~~~l~~~~ 93 (101)
T smart00239 82 IGQVTIPLSDLL 93 (101)
T ss_pred eEEEEEEHHHcc
Confidence 999999998883
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.01 E-value=9.8e-10 Score=115.76 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=101.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~i 92 (527)
-.|.|.|.+|+||++.+..|.+||||.|.++.. ..+|.++.+++.|-|.|+|.|.+...-..|.|=|||.| ++.|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 458899999999999999999999999999865 45999999999999999999999877788999999999 8999999
Q ss_pred EEEEEEcccC--CCcccEEEEccC------CCceEEEEEEEeecc
Q 009741 93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLP 129 (527)
Q Consensus 93 G~~~i~l~~l--~~~~~~w~~L~~------~~G~i~l~l~~~~~~ 129 (527)
|.+.|.=.++ .++.+.|+.|.+ -.|++++++.+....
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc
Confidence 9999988887 567899999965 138888888776543
No 105
>PLN02223 phosphoinositide phospholipase C
Probab=98.99 E-value=3.9e-09 Score=111.02 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=85.2
Q ss_pred ceEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEEE
Q 009741 13 AYLIKLELLAAKNLIGA-----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTIY 81 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~-----d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V~ 81 (527)
...|.|+|+.|.+++.. +.....||||+|.+. ...++|.+..++.||.|||+|.|.+..+.. .|+|+||
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987521 224568999999973 345578777889999999999999876655 4899999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 009741 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV 119 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~i 119 (527)
|+|..++++|+|++.+|+..+..+ -++++|..+.|..
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~~ 524 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGKA 524 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcCC
Confidence 999988899999999999999765 5788887666653
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.97 E-value=4.1e-09 Score=92.18 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=73.8
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eEEEeeeecCCCC--CeeccEEEEEecC---------------
Q 009741 16 IKLELLAAKNLIGAN--LNG--TSDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE--------------- 71 (527)
Q Consensus 16 L~V~vi~A~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~W~e~f~f~v~~--------------- 71 (527)
|+|.|..|++++..+ ..| .+||||+..+.. .+++|.+..+++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999966543 356 499999999854 4578999999999 9999999988532
Q ss_pred ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccCC
Q 009741 72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103 (527)
Q Consensus 72 ---------~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l~ 103 (527)
....|.++|||.|.+++|++||.+.++|..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP 122 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence 13459999999999999999999999999883
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.7e-09 Score=111.82 Aligned_cols=91 Identities=26% Similarity=0.422 Sum_probs=78.6
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d 82 (527)
+..|.|+|.|++|++|+.++..+.+||||.+.+- ..+++|.+.++++||.|||+|.|.+... ...|.|+|||
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 4579999999999999999999999999999862 2345799999999999999999988632 3459999999
Q ss_pred cCCCCCCceeEEEEEEccc
Q 009741 83 WDIIWKSTVLGSVIVTVES 101 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~ 101 (527)
++.++..++||++.+....
T Consensus 375 ~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 HDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccccceeeEEEecCCC
Confidence 9999999999998887765
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=98.87 E-value=1.5e-08 Score=108.76 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=83.7
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEE
Q 009741 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI 80 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~------d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V 80 (527)
...|.|+|+.|.+++.. +.....||||++.+- ..+.+|+++.++.||.|||+|.|.+..+.. .|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999887432 112345899999863 456789999999999999999999766543 489999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009741 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (527)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G 117 (527)
||+|..+.++|+|++.+++..+..+ -+|++|..+.|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~G-yR~VpL~~~~G 584 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPG-IRSVPLHDKKG 584 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCC-ceeEeCcCCCC
Confidence 9999988899999999999999765 46999975444
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.85 E-value=9.7e-09 Score=114.11 Aligned_cols=105 Identities=23% Similarity=0.382 Sum_probs=90.3
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCC
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWK 88 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~-~~~~L~~~V~d~d~~~~ 88 (527)
.+.|-|+|.+..|.||+..+..|.+||||.+.+.+. .++|+++++++||.|||.|.+++.. ....+.+.|+|||...+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence 357889999999999999999999999999999766 6799999999999999999999864 46779999999999999
Q ss_pred CceeEEEEEEcccCCCccc--EEEEccCC
Q 009741 89 STVLGSVIVTVESEGQTGA--VWYTLDSP 115 (527)
Q Consensus 89 d~~iG~~~i~l~~l~~~~~--~w~~L~~~ 115 (527)
++.||.+.++|..+.+... .-.+|.++
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCc
Confidence 9999999999999943333 34455543
No 110
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.82 E-value=1.1e-09 Score=115.12 Aligned_cols=122 Identities=26% Similarity=0.469 Sum_probs=97.3
Q ss_pred CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--e-----------------------------EEEeeeecC
Q 009741 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--E-----------------------------KRFSSMVPG 55 (527)
Q Consensus 7 ~~~~~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~--~-----------------------------~~~T~~~~~ 55 (527)
++.++..+.+.|.+.+|.+|.+++.+|.+|||+...+.. . .+-|.+.++
T Consensus 107 ~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~ 186 (1103)
T KOG1328|consen 107 KQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK 186 (1103)
T ss_pred cCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc
Confidence 344566777888999999999999999999999875410 0 012788899
Q ss_pred CCCCeeccEEEEEecCC-CcEEEEEEEEcCC---------------------------------CCC---CceeEEEEEE
Q 009741 56 SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDI---------------------------------IWK---STVLGSVIVT 98 (527)
Q Consensus 56 t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~---------------------------------~~~---d~~iG~~~i~ 98 (527)
|+||.|+|.|.|++.+. ...+++-+||+|. .+. |||+|++.|+
T Consensus 187 TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 187 TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 99999999999999774 5679999999983 123 7999999999
Q ss_pred cccC-CCcccEEEEccCCC------ceEEEEEEEeec
Q 009741 99 VESE-GQTGAVWYTLDSPS------GQVCLHIKTIKL 128 (527)
Q Consensus 99 l~~l-~~~~~~w~~L~~~~------G~i~l~l~~~~~ 128 (527)
|.++ ..+.++||.|+++. |++++.|.+.-.
T Consensus 267 l~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 267 LAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred hhcCCcchHHHHhccCcccccccccceEEEEEEEeee
Confidence 9999 56789999998843 888887776644
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.78 E-value=3.7e-08 Score=105.72 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=83.9
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEE
Q 009741 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI 80 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~------d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V 80 (527)
...|.|+|+.+.+++.. +.....||||+|.+- ..+.+|++..++.||.|||+|.|.+.-+.. .|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999986421 223457999999972 345688888899999999999999766544 499999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (527)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (527)
||+|..++++|+|+..+++..|..+ -+.++|..+.|.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR~V~L~~~~G~ 584 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG-IHAVPLFNRKGV 584 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc-cceEeccCCCcC
Confidence 9999988999999999999999765 557788765654
No 112
>PLN02270 phospholipase D alpha
Probab=98.76 E-value=1e-07 Score=104.53 Aligned_cols=116 Identities=18% Similarity=0.331 Sum_probs=92.6
Q ss_pred ceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCeE-EEeeeecCC-CCCeeccEEEEEecCC
Q 009741 13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDEL 72 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t-~nP~W~e~f~f~v~~~ 72 (527)
.|.|.|+|++|++|+..+ ..+.+||||.+.+++.+ .+|+++.+. .||.|+|.|.+.+.-.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998631 13467999999998655 599999885 6999999999998777
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----c--eEEEEEEEeecc
Q 009741 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----G--QVCLHIKTIKLP 129 (527)
Q Consensus 73 ~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~~~-----G--~i~l~l~~~~~~ 129 (527)
...+.|.|.|.|.++.. +||.+.|++.++ +...+.|+++.... + ++++++++.+..
T Consensus 87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 88899999999988554 999999999998 55688999995522 2 455566665543
No 113
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.74 E-value=4.2e-08 Score=80.84 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741 16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 16 L~V~vi~A~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~ 91 (527)
|.|+|.+|+++...+ ..+.+||||.++++.. +.+|++ +.||.|||+|.|++.. ...+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCC-Ceecc
Confidence 579999999998887 5778999999999876 678888 4799999999999954 7889999999865 34457
Q ss_pred eEEEEEEcccC
Q 009741 92 LGSVIVTVESE 102 (527)
Q Consensus 92 iG~~~i~l~~l 102 (527)
||..-+.++++
T Consensus 76 i~llW~~~sdi 86 (109)
T cd08689 76 VGLLWLRLSDI 86 (109)
T ss_pred eeeehhhHHHH
Confidence 88888888876
No 114
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.72 E-value=1.1e-07 Score=101.92 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=83.1
Q ss_pred ceEEEEEEEEeecCC--C----CCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCc-EEEEEE
Q 009741 13 AYLIKLELLAAKNLI--G----ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPV-QIIVTI 80 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~--~----~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~-~L~~~V 80 (527)
...|.|+|+.|.+++ . .+.....||||+|.+. ..+.+|+++.++.||.|+|+|.|.+..+.. .|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 1 1123457899999873 446789999999999999999999766544 499999
Q ss_pred EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (527)
Q Consensus 81 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (527)
||+|..+.++|+|+..+++..+..+ -+.++|..+.|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~ 567 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE 567 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence 9999888899999999999999765 557788665554
No 115
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.70 E-value=5.4e-08 Score=104.51 Aligned_cols=104 Identities=21% Similarity=0.341 Sum_probs=83.0
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEEC-----CeEEEeeee-cCCCCCeeccEEEEEecCCCcE-EEEEEEEc
Q 009741 15 LIKLELLAAKNLIGANL----NGTSDPYAIITCG-----SEKRFSSMV-PGSRYPMWGEEFNFSVDELPVQ-IIVTIYDW 83 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~----~g~~dPyv~v~~~-----~~~~~T~~~-~~t~nP~W~e~f~f~v~~~~~~-L~~~V~d~ 83 (527)
+|.|.|+.+.++.+... ...+||||.+.+- ....+|+++ .++.||.|+|+|.|.+..+... |+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999996655432 2458999999863 345689955 6789999999999998876654 89999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 009741 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV 119 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~i 119 (527)
|..++|+|+|+.++|+..+..+ -+-++|..+.|+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~G-yRhVpL~~~~G~~ 731 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQG-YRHVPLLSREGEA 731 (746)
T ss_pred CCCCcccccceeeccHHHhhCc-eeeeeecCCCCcc
Confidence 9999999999999999999765 4456666656654
No 116
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=105.97 Aligned_cols=122 Identities=16% Similarity=0.332 Sum_probs=99.4
Q ss_pred CCCCceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCC
Q 009741 9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85 (527)
Q Consensus 9 ~~~~~g~L~V~vi~A~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~ 85 (527)
.+..-|+|.|+|.+|++|...+ ..+..|||+.+..... ..+|++.++++||+|||+|-+.+....++|.++|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 4567899999999999999888 5889999999986533 348999999999999999999998888999999999998
Q ss_pred CCCCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEEeeccc
Q 009741 86 IWKSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLPV 130 (527)
Q Consensus 86 ~~~d~~iG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~l~l~~~~~~~ 130 (527)
..+|+.+|.+.++|..+ ......-+.+.. ..|++...+++.+...
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccC
Confidence 89999999999999887 122223444422 3488888887776643
No 117
>PLN02228 Phosphoinositide phospholipase C
Probab=98.69 E-value=2.2e-07 Score=99.44 Aligned_cols=105 Identities=12% Similarity=0.193 Sum_probs=82.7
Q ss_pred ceEEEEEEEEeecCCC---CC---CCCCCCcEEEEEE-----CCeEEEeeeecCCCCCee-ccEEEEEecCCCc-EEEEE
Q 009741 13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW-GEEFNFSVDELPV-QIIVT 79 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~---~d---~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W-~e~f~f~v~~~~~-~L~~~ 79 (527)
...|.|+|+.|.+|+. .+ .....||||++.+ +..+.+|+++.++.||.| +|+|.|.+..+.. -|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 11 2335799999986 234568999988899999 9999999766543 48999
Q ss_pred EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009741 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (527)
Q Consensus 80 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~G~ 118 (527)
|+|+|..+.++|+|++.+++..+..+ -+.++|..+.|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~ 547 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK 547 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence 99999888999999999999999654 567788665544
No 118
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.66 E-value=1.2e-08 Score=107.60 Aligned_cols=91 Identities=26% Similarity=0.438 Sum_probs=79.9
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeccEEEEEecCCC-----cEEEEE
Q 009741 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELP-----VQIIVT 79 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~W~e~f~f~v~~~~-----~~L~~~ 79 (527)
+.-.|.|.|+.|+++.+.|.+|.+||||+|.+... .++|+++++++||+|+|+|.|.|...+ ..|.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 34467788999999999999999999999998643 358999999999999999999986432 239999
Q ss_pred EEEcCCCCCCceeEEEEEEcccC
Q 009741 80 IYDWDIIWKSTVLGSVIVTVESE 102 (527)
Q Consensus 80 V~d~d~~~~d~~iG~~~i~l~~l 102 (527)
|+|+|-++.+||-|++.+.|+.+
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred eeccceecccccchHHHHhhCCC
Confidence 99999999999999999999998
No 119
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.64 E-value=7.1e-08 Score=99.39 Aligned_cols=114 Identities=18% Similarity=0.310 Sum_probs=95.4
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCeec-cEEEEEecCC---CcEEEEEEEEcCCCCC
Q 009741 14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDEL---PVQIIVTIYDWDIIWK 88 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~-e~f~f~v~~~---~~~L~~~V~d~d~~~~ 88 (527)
|.|-|.|..||+|+.+|. ....|.||.+++.+..++|.+..+++||.|| +.|.|++++. +.+|.+.+.|+|.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678899999999999986 4468999999999999999999999999999 7799998763 4569999999999999
Q ss_pred CceeEEEEEEcccC------------CCcccEEEEccC----CCceEEEEEEEee
Q 009741 89 STVLGSVIVTVESE------------GQTGAVWYTLDS----PSGQVCLHIKTIK 127 (527)
Q Consensus 89 d~~iG~~~i~l~~l------------~~~~~~w~~L~~----~~G~i~l~l~~~~ 127 (527)
++-||.+.|.++.+ +.....|+++.. -.|+|.+.+++..
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdl 137 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDL 137 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEee
Confidence 99999999999987 123457999854 2367766666553
No 120
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.53 E-value=3.3e-07 Score=97.96 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=79.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEE-eeeecCCCCCeec-cEEEEEecCCCcE-EEEEEEEcC
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRF-SSMVPGSRYPMWG-EEFNFSVDELPVQ-IIVTIYDWD 84 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~-T~~~~~t~nP~W~-e~f~f~v~~~~~~-L~~~V~d~d 84 (527)
...|.|.|+.||+|+... .|...|||.|.+ +..+++ |.++.+++||+|+ |.|+|.+.+|.-. |+|.||+.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 467889999999998544 556779999986 334454 5555888999999 9999999886554 999999999
Q ss_pred CCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741 85 IIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (527)
Q Consensus 85 ~~~~d~~iG~~~i~l~~l~~~~~~w~~L~ 113 (527)
.++...|||++..|+..+..+ -+-++|.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLk 1170 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLK 1170 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc-ceeeecc
Confidence 999989999999999998543 4456664
No 121
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.36 E-value=1.4e-06 Score=92.56 Aligned_cols=108 Identities=26% Similarity=0.441 Sum_probs=81.8
Q ss_pred CCCCCCCceEEEEEE---------------EEeecCCCCCCCCCCCcEEEEEECCeE----EEeeeecCCCCCeeccEEE
Q 009741 6 GDPQTNSAYLIKLEL---------------LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFN 66 (527)
Q Consensus 6 ~~~~~~~~g~L~V~v---------------i~A~~L~~~d~~g~~dPyv~v~~~~~~----~~T~~~~~t~nP~W~e~f~ 66 (527)
.+++++-+|.+.+.+ +.++.+.|.. ++.+|||+++...+.. .+|++.+++.+|.|+|.|.
T Consensus 108 VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~ 186 (800)
T KOG2059|consen 108 VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFY 186 (800)
T ss_pred cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhhee
Confidence 456666677776665 3344444443 5669999999875444 3899999999999999999
Q ss_pred EEecCC----------------CcEEEEEEEE-cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 67 FSVDEL----------------PVQIIVTIYD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 67 f~v~~~----------------~~~L~~~V~d-~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
|.+... ...|++++|+ ++....+.|+|++.+++..+ ....+.||-|.+
T Consensus 187 f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp 253 (800)
T KOG2059|consen 187 FEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP 253 (800)
T ss_pred eeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence 987533 2348999999 55556699999999999987 455678999976
No 122
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.15 E-value=1.2e-06 Score=96.07 Aligned_cols=91 Identities=22% Similarity=0.432 Sum_probs=81.1
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCC
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIW 87 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~ 87 (527)
+-...++|++++|-+|.+.|..|.+|||+.+.++... -+...+++++||+|.+.|.+...-+ ...|.++|||+|..+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 4467888999999999999999999999999998776 3688899999999999999987654 456999999999999
Q ss_pred CCceeEEEEEEccc
Q 009741 88 KSTVLGSVIVTVES 101 (527)
Q Consensus 88 ~d~~iG~~~i~l~~ 101 (527)
.|+.||+..+.|..
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 99999999998875
No 123
>PLN02352 phospholipase D epsilon
Probab=97.97 E-value=7e-05 Score=82.44 Aligned_cols=111 Identities=12% Similarity=0.152 Sum_probs=80.4
Q ss_pred CceEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCeE-EEeeeecCCCCCeeccEEEEEecCCC-cEEEEEEEEcC
Q 009741 12 SAYLIKLELLAAKNLIGA----NLN-GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD 84 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~----d~~-g~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~f~v~~~~-~~L~~~V~d~d 84 (527)
-.|.|.++|.+|+-+... ... ...+|||.+.++..+ .+| .+..||.|+|.|.+.+.-.. ..+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 468899999999844322 111 123999999998655 477 55679999999999986555 679999977
Q ss_pred CCCCCceeEEEEEEcccC--CCc-ccEEEEccCCC-----c-eEEEEEEEeeccc
Q 009741 85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLPV 130 (527)
Q Consensus 85 ~~~~d~~iG~~~i~l~~l--~~~-~~~w~~L~~~~-----G-~i~l~l~~~~~~~ 130 (527)
...+||.+.|++.++ +.. .+.|+++.... | ++++.+.+.+...
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 357999999999998 323 78999996532 3 4555666555443
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.95 E-value=6.2e-06 Score=87.29 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=85.4
Q ss_pred eccCCcccccccccCcccceeEeEEEeeee---ccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccc-cc
Q 009741 158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FI 233 (527)
Q Consensus 158 ~~~k~~~f~~~F~lp~~e~l~~~f~c~l~~---~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~ 233 (527)
.+.+++.| .+|+|| |.+...-.|.+.- ..+.+||||++.+++||.|...+ ...+++|+..|..|++.... .+
T Consensus 6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~ 81 (671)
T KOG4347|consen 6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF 81 (671)
T ss_pred hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence 45678899 999999 9999999999887 45689999999999999999875 58999999999999999844 34
Q ss_pred cCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHH
Q 009741 234 NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280 (527)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~ 280 (527)
...|.+.++ +...+.|..+..|+..+.-+...
T Consensus 82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~~ 113 (671)
T KOG4347|consen 82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHLP 113 (671)
T ss_pred hhhhHHhhc---------------CcceEEecchhhHHHHHHHHhch
Confidence 446777664 45788999999999887544433
No 125
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.88 E-value=1.1e-05 Score=89.76 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=84.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEE-ecC---CCcEEEEEEEEc
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW 83 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~d~ 83 (527)
+++|+|-|..|++|.-..-+...||||..++. ..+++|+++++|.+|.|||....+ ... ..+.|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 67899999999999766657789999999984 235689999999999999998877 221 246799999999
Q ss_pred CCCCCCceeEEEEEEcccCCC--cccEEEEccC
Q 009741 84 DIIWKSTVLGSVIVTVESEGQ--TGAVWYTLDS 114 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l~~--~~~~w~~L~~ 114 (527)
+.+....|+|.+.|+|..+.. ....||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 998889999999999998843 3348999964
No 126
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.66 E-value=8.6e-05 Score=63.35 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=73.2
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeeecCCCCCeeccEEEEEec-----C--
Q 009741 16 IKLELLAAKNLIGANL-------------NGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD-----E-- 71 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~-------------~g~~dPyv~v~~----~~~~~~T~~~~~t~nP~W~e~f~f~v~-----~-- 71 (527)
|.|.|++|.+|+.... .=.-++||.+.+ +...++|+++.++-.|.|+..++|.+. +
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688899998865321 112478999885 355678999999999999999999853 1
Q ss_pred ---------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEc
Q 009741 72 ---------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL 112 (527)
Q Consensus 72 ---------~~~~L~~~V~d~d~~----------~~d~~iG~~~i~l~~l---~~~~~~w~~L 112 (527)
....+.|+||+.... .+|-.||.+.||+..+ ..+..+||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 123489999997642 2456899999999998 5678899985
No 127
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00018 Score=75.78 Aligned_cols=101 Identities=17% Similarity=0.284 Sum_probs=81.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeeeecCCCCCeeccEEEEEecCCC----cEEEEEEE
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDELP----VQIIVTIY 81 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~W~e~f~f~v~~~~----~~L~~~V~ 81 (527)
...++|.|+.|.+|+-.. .|.--|||.+.+- .+++.|++..++..|.+||+|.|-+.+.. -.|.|.|.
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 456889999999997654 6778899999862 23446889999999999999999975432 34999999
Q ss_pred EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009741 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~~L~~ 114 (527)
|+.-...|..+|.+.+.|.++ ...-..|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 988777789999999999998 444568999964
No 128
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=5.2e-05 Score=74.34 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=78.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009741 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~ 83 (527)
....+.|++++|..|..+|.+|-+||||..++.. -+.+|.+.+++++|.|++.|.+++... ...+.|.|||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 4556779999999999999999999999998742 235799999999999999999987543 45699999999
Q ss_pred CCCCCCceeEEEEEEcccCCCcccEEE
Q 009741 84 DIIWKSTVLGSVIVTVESEGQTGAVWY 110 (527)
Q Consensus 84 d~~~~d~~iG~~~i~l~~l~~~~~~w~ 110 (527)
+..+..+++|-+...+.........|+
T Consensus 311 ~~G~s~d~~GG~~~g~~rr~~v~~h~g 337 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGGYRRGEVHKHWG 337 (362)
T ss_pred CCCcCccCCCcccccccccchhhcCcc
Confidence 998788899887766555443333443
No 129
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.53 E-value=0.00021 Score=75.21 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=101.4
Q ss_pred EEeeeecCCCCCeeccEEEEEe-cCCCcEEEEEEEEcCCC----CCCceeEEEEEEcccCCCcccEEEEccCCC----ce
Q 009741 48 RFSSMVPGSRYPMWGEEFNFSV-DELPVQIIVTIYDWDII----WKSTVLGSVIVTVESEGQTGAVWYTLDSPS----GQ 118 (527)
Q Consensus 48 ~~T~~~~~t~nP~W~e~f~f~v-~~~~~~L~~~V~d~d~~----~~d~~iG~~~i~l~~l~~~~~~w~~L~~~~----G~ 118 (527)
.+|+++.+++||.|.+.|.+.. .+..+.|++.+++.+.. ..++|+|++...++.+.........|..+. |.
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~ 122 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS 122 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence 3799999999999999998874 45567899999998753 457899999999998833222222222111 22
Q ss_pred EEEEEEEeecccCccccccCccchhcccccccccCCCceeccCCcccccccccCccc----------------ceeEeEE
Q 009741 119 VCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDE----------------FVELSYS 182 (527)
Q Consensus 119 i~l~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~~F~lp~~e----------------~l~~~f~ 182 (527)
+.|.+..+.....+ ...+..++..+++++++..++++|..+++.-.++ +.|..|.
T Consensus 123 --g~iti~aee~~~~~-------~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~ 193 (529)
T KOG1327|consen 123 --GTITISAEEDESDN-------DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS 193 (529)
T ss_pred --ccEEEEeecccccC-------ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc
Confidence 22333322222221 1112222346788899999999999999754333 5677777
Q ss_pred EeeeeccccceeEEeecceEEEEeccCCc
Q 009741 183 CVIERSFLYHGRMYVSAWHICFHSNAFSR 211 (527)
Q Consensus 183 c~l~~~~~~~Gr~yis~~~~cF~s~~~g~ 211 (527)
..++ -+|.+..-.+...+|++.+..|.
T Consensus 194 i~~~--~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 194 ISLQ--SLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred cchh--hhcccCCCCceEEEEeccCCCCC
Confidence 7777 66777777777788888877653
No 130
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.50 E-value=2.2e-05 Score=86.46 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=85.2
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEE-ec---------CCCcEEEEEEE
Q 009741 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VD---------ELPVQIIVTIY 81 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~-v~---------~~~~~L~~~V~ 81 (527)
..+.++++|.+|+.|...+..+.+|||+.+..-++.+.|.++.++++|.|+++..|. +. .....+.|+||
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y 283 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY 283 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence 456677888999999999999999999999999999999999999999999999886 21 12344889999
Q ss_pred EcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009741 82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l-~~~~~~w~~L~ 113 (527)
|.+..+.++|+|+......-. ..+...|+++-
T Consensus 284 d~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~ 316 (1105)
T KOG1326|consen 284 DLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM 316 (1105)
T ss_pred hhhhhchHHhhcccccceEEEecCCccceEEee
Confidence 999999999999987655544 35677899885
No 131
>PLN02964 phosphatidylserine decarboxylase
Probab=97.11 E-value=0.0008 Score=73.63 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=69.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCeEEEeeeecCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~-v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-~~~L~~~V~d~d~~~~d~ 90 (527)
.|.+.+++++|+ ++ ..|||.. +.++.+.++|.+.++|+||+||+...|.+... ....+|.|||++.+++++
T Consensus 53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 678889999987 33 3588765 56788999999999999999999988887542 333799999999999999
Q ss_pred eeEEEEEEcccC
Q 009741 91 VLGSVIVTVESE 102 (527)
Q Consensus 91 ~iG~~~i~l~~l 102 (527)
++|.++++|..+
T Consensus 126 lv~~~e~~~t~f 137 (644)
T PLN02964 126 LVGYCELDLFDF 137 (644)
T ss_pred hhhheeecHhhc
Confidence 999999988776
No 132
>PF14470 bPH_3: Bacterial PH domain
Probab=97.10 E-value=0.012 Score=48.24 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=67.3
Q ss_pred cCcccceeEeEEEeeee-ccccceeEEeecceEEEEecc-CCceeEEEEecccceeeeecccccccCcEEEEEecCCCCC
Q 009741 171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH 248 (527)
Q Consensus 171 lp~~e~l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~~-~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~~ 248 (527)
|.++|.++....|.+.. .....|-+.+|++.+.|+... +|......+|+++|.+|+..++. +.+.|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~------- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET------- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence 46789999999998762 234579999999999999765 77788999999999999999765 456788887
Q ss_pred CCCCCCCCCCceeEEEeeeechHHHH
Q 009741 249 GVPPLGSPDGRVRYKFASFWNRNHAL 274 (527)
Q Consensus 249 ~~~~~~~~~~~~~~~f~sf~~r~~~~ 274 (527)
+..++.|.++ ..+++-
T Consensus 73 ---------~~~~~~i~~i-~k~~~~ 88 (96)
T PF14470_consen 73 ---------NGEKIKIDNI-QKGDVK 88 (96)
T ss_pred ---------CCEEEEEEEc-CHHHHH
Confidence 2468888888 444443
No 133
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.00017 Score=70.76 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=75.6
Q ss_pred CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEE
Q 009741 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYD 82 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d 82 (527)
....+.+++..|.+|++++..+..|||+.+.+.. .+.+|++..+++||.|+|+..... .+. ...+++.|.|
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence 3456789999999999999999999999988742 235788999999999999877662 221 2348889999
Q ss_pred cCCCCCCceeEEEEEEcccCCC
Q 009741 83 WDIIWKSTVLGSVIVTVESEGQ 104 (527)
Q Consensus 83 ~d~~~~d~~iG~~~i~l~~l~~ 104 (527)
.+.+...+++|+..+.+..+.+
T Consensus 171 n~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 171 NDKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred CcccccccCcccchhhhhccCh
Confidence 9999889999999988887743
No 134
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.77 E-value=0.0021 Score=67.89 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=66.6
Q ss_pred EEeecCCCCCCCCCCCcEEEEEEC--C----eEEEeeeecCCCCCeeccEEEEEe-----cCCCcEEEEEEEEcCCCCCC
Q 009741 21 LAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQIIVTIYDWDIIWKS 89 (527)
Q Consensus 21 i~A~~L~~~d~~g~~dPyv~v~~~--~----~~~~T~~~~~t~nP~W~e~f~f~v-----~~~~~~L~~~V~d~d~~~~d 89 (527)
++|++|.++|.++++|||..+.-. . ..++|++++++++|.|.+ |.+.. .++...+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 668899999999999999998732 1 234899999999999954 44442 24467799999999999999
Q ss_pred ceeEEEEEEcccCC
Q 009741 90 TVLGSVIVTVESEG 103 (527)
Q Consensus 90 ~~iG~~~i~l~~l~ 103 (527)
+++|.+..++..+.
T Consensus 222 ~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQ 235 (529)
T ss_pred CceeEecccHHHhc
Confidence 99999999988873
No 135
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.00093 Score=66.80 Aligned_cols=103 Identities=14% Similarity=0.237 Sum_probs=82.8
Q ss_pred CceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCe-----EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEE-cC
Q 009741 12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD-WD 84 (527)
Q Consensus 12 ~~g~L~V~vi~A~~L~~~d~-~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d-~d 84 (527)
..|.+.|.|++|++|..+.- ...++|||.|++-.. +.+|+...+++.|.+.+...|.-..+...|.++||. +.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 47889999999999987653 336899999997422 347899999999988888888877777889999996 44
Q ss_pred CCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 009741 85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS 114 (527)
Q Consensus 85 ~~~~d~~iG~~~i~l~~l~---~~~~~w~~L~~ 114 (527)
.+-++.|+|.+.+-+.+++ .....||.|.+
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 5556789999999999983 35678999975
No 136
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=96.57 E-value=0.0043 Score=52.26 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=58.4
Q ss_pred eeEeEEEeeee-ccccceeEEeecceEEEEec---------------cCCceeEEEEecccceeeeecccccccCcEEEE
Q 009741 177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240 (527)
Q Consensus 177 l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~---------------~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~ 240 (527)
++.++.|.+-. ...+.|.+.++.++++|..+ .-.......+|+++|..|.+..-.+-..||+|-
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF 81 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF 81 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence 45678899887 45589999999999999976 333467788999999999987754444599999
Q ss_pred EecCCCCCCCCCCCCCCCce-eEEEeeeechHHHHHH
Q 009741 241 LRMGAGGHGVPPLGSPDGRV-RYKFASFWNRNHALRQ 276 (527)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~~f~sf~~r~~~~~~ 276 (527)
+.+ |+. -+.|.+-..||++++.
T Consensus 82 ~~d--------------g~s~f~~F~~~~~R~~v~~~ 104 (106)
T PF14844_consen 82 FSD--------------GRSYFFNFESKKERDEVYNK 104 (106)
T ss_dssp ETT--------------S-EEEEE-SSHHHHHHHHCC
T ss_pred EcC--------------CcEEEEEcCCHHHHHHHHHh
Confidence 853 332 2334455667776643
No 137
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.24 E-value=0.0037 Score=49.81 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=64.8
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEE--EEECC-eEEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC
Q 009741 17 KLELLAAKNLIGANLNGTSDP--YAI--ITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK 88 (527)
Q Consensus 17 ~V~vi~A~~L~~~d~~g~~dP--yv~--v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~~~ 88 (527)
.++++.+++|.-....| -+| |+. +.+.. -..+|....+..||.|.|+|.|.+.. ....|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 57889999986543322 234 332 23333 34588888999999999999998642 24569999998 4456
Q ss_pred CceeEEEEEEcccCC-CcccEEEE
Q 009741 89 STVLGSVIVTVESEG-QTGAVWYT 111 (527)
Q Consensus 89 d~~iG~~~i~l~~l~-~~~~~w~~ 111 (527)
.+.||.+.+.+++++ .....|.+
T Consensus 79 Ke~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHHHhhhhhc
Confidence 779999999999995 34556754
No 138
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.16 E-value=0.77 Score=41.64 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=102.7
Q ss_pred eeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecC-CC-----CCCcceeEeEEE
Q 009741 341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK-SP-----IYPRDTAMTESQ 414 (527)
Q Consensus 341 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~-~~-----~gpk~~~~~~~Q 414 (527)
...||+|++++|.+|.+ ..||..-++..+..+..+..-...++ + ....+.-..|-. -| +-+..-.+.+++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~-g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGD-G-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCC-e-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 46899999999988875 67888888888887777777666654 3 333333333321 11 444456677777
Q ss_pred EEEEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHH
Q 009741 415 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE 494 (527)
Q Consensus 415 ~~~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~ 494 (527)
+..... +..+..+.....+ |....+.....++. +..+|++.+. ..|+-. =.++-++||+.+.+...+.++
T Consensus 80 ~w~~~~-~g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~---g~v~v~-VPlvGgkiE~~v~~~~~~~~~ 149 (159)
T PF10698_consen 80 TWTPLD-DGRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVE---GEVKVK-VPLVGGKIEKAVAENLRKLLE 149 (159)
T ss_pred EEecCC-CCeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEE---EEEEEE-EccccHHHHHHHHHHHHHHHH
Confidence 774333 3456655555544 55689999999999 5677988888 666432 246889999999988888888
Q ss_pred HHHHHHHHH
Q 009741 495 LMLETARSY 503 (527)
Q Consensus 495 ~~~~~~~~~ 503 (527)
.--+.+.+.
T Consensus 150 ~e~~~~~~w 158 (159)
T PF10698_consen 150 AEQEFTAEW 158 (159)
T ss_pred HHHHHHHhh
Confidence 777766654
No 139
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.95 E-value=0.0093 Score=60.40 Aligned_cols=112 Identities=11% Similarity=0.160 Sum_probs=76.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeccEEEEEecCCC------------cEEE
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDELP------------VQII 77 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~f~v~~~~------------~~L~ 77 (527)
.|.+.|+++.+++......-.|-|+++.+ ..++.+|.+++++.+|.|+|.|.+.+.... ..++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 45677778777755332223467888764 234558999999999999999999975421 1289
Q ss_pred EEEEEcCCC-CCCceeEEEEEEcccCCC--cccEEEEccC----CCceEEEEEEEe
Q 009741 78 VTIYDWDII-WKSTVLGSVIVTVESEGQ--TGAVWYTLDS----PSGQVCLHIKTI 126 (527)
Q Consensus 78 ~~V~d~d~~-~~d~~iG~~~i~l~~l~~--~~~~w~~L~~----~~G~i~l~l~~~ 126 (527)
|++|++..+ .+|.++|.+.+.|..|.. .....++|.. -+|.+.+.+++.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999998765 458899999999998833 2345667643 135555555544
No 140
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.30 E-value=0.24 Score=39.98 Aligned_cols=83 Identities=12% Similarity=0.252 Sum_probs=61.0
Q ss_pred CCcEEEEEECCeEE-EeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009741 35 SDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (527)
Q Consensus 35 ~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~ 113 (527)
.+..+++.+++... +|.-.+ ..+..|++.|.++++. .+.|.|.||-+|- ..+.|-..+.|.+... ....+|.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~--~~~~~le 81 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH--EVQLDME 81 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc--cceeccc
Confidence 67788888887544 554433 3578999999999976 7889999998864 3466777788888532 4566777
Q ss_pred CCCceEEEEEEE
Q 009741 114 SPSGQVCLHIKT 125 (527)
Q Consensus 114 ~~~G~i~l~l~~ 125 (527)
| .|.+..++++
T Consensus 82 p-qg~l~~ev~f 92 (98)
T cd08687 82 P-QLCLVAELTF 92 (98)
T ss_pred c-ccEEEEEEEe
Confidence 5 7888777776
No 141
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.85 E-value=0.39 Score=48.97 Aligned_cols=111 Identities=19% Similarity=0.262 Sum_probs=84.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II 86 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~--------~~~~L~~~V~d~d-~~ 86 (527)
+.|.|++|++.+... ...-.+..++++....|..+.++-.|.|+.....+++. ...+|++++|-.| ..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 568999999987652 33456667789999999999999999999998887642 3566999999998 55
Q ss_pred CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEEeecc
Q 009741 87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKLP 129 (527)
Q Consensus 87 ~~d~~iG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~l~l~~~~~~ 129 (527)
+..+.+|.+.++|... . .....||+|.+- +-++.+.|.++...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 6678999999999887 2 245679999653 23455666666444
No 142
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.43 E-value=0.089 Score=51.65 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=79.1
Q ss_pred CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009741 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~--~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~ 87 (527)
...|.|.+.++.+++|+-... +-.-+-||++..+.+ ..+|.+......-.|.|+|..++.+ ...+.+-||.|+.-.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 457999999999999965432 445688999988754 4577777777888999999999875 577899999999866
Q ss_pred CCceeEEEEEEcccC-CCcccEEE--EccCCCceEEEEEEEe
Q 009741 88 KSTVLGSVIVTVESE-GQTGAVWY--TLDSPSGQVCLHIKTI 126 (527)
Q Consensus 88 ~d~~iG~~~i~l~~l-~~~~~~w~--~L~~~~G~i~l~l~~~ 126 (527)
.+.+.-..-+.+..+ ....+.-+ .|.+ .|++-+++.+.
T Consensus 127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~ 167 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA 167 (442)
T ss_pred hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence 666532223333333 22233333 3444 68877777665
No 143
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.24 E-value=0.11 Score=57.55 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=68.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeeeec-CCCCCeecc-EEEEE-ec-CCCcEEEEEEE
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVP-GSRYPMWGE-EFNFS-VD-ELPVQIIVTIY 81 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~-~t~nP~W~e-~f~f~-v~-~~~~~L~~~V~ 81 (527)
.+.+.|+||++.-|..+. ...||.|.+-+ ..++|+++. ++.||+|+| .|.|. |- +.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 678999999999986654 44899998621 335788885 469999995 48887 32 22345999999
Q ss_pred EcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009741 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (527)
Q Consensus 82 d~d~~~~d~~iG~~~i~l~~l~~~~~~w~~L~~ 114 (527)
+... .|||+-.++++.+..+ -+.+.|..
T Consensus 778 eEgg----K~ig~RIlpvd~l~~G-Yrhv~LRs 805 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNAG-YRHVCLRS 805 (1189)
T ss_pred ccCC----ceeeeeccchhcccCc-ceeEEecC
Confidence 9765 5999999999999654 44555644
No 144
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.12 E-value=0.65 Score=41.69 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCceEEEEEEEEeecCCCCCC--CCCCCcEEEE--EECCeEEEeeeecCCCCCeeccEEEEEecCC--------------
Q 009741 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAII--TCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-------------- 72 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~--~g~~dPyv~v--~~~~~~~~T~~~~~t~nP~W~e~f~f~v~~~-------------- 72 (527)
+....|.+.|..++-...--. .+..+....+ .+++++++|+.+..+.+|.|+|.|.|+++..
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 456778899998874322111 1344444444 4578999999999999999999999997532
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009741 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (527)
Q Consensus 73 ~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l 102 (527)
..+|++-|--.|..+...++|.-.+....+
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 244888888878776778899888888776
No 145
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=93.44 E-value=1.8 Score=41.44 Aligned_cols=155 Identities=10% Similarity=0.148 Sum_probs=86.5
Q ss_pred eeee-ecCHHHHHHHhcCCCCchHHHHHHHc-CCcceEeccceecCCCCCeEEEEEEE-EecCCCCCCcceeEeEEEEEE
Q 009741 341 NDVF-PCTAEQFFTLLFSDDSKFTNEYRAAR-KDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHAV 417 (527)
Q Consensus 341 ~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~-~~~~~~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~~ 417 (527)
..++ +++++.+|+++.+ ..+..++-... ....+.. . ++ +. .+.|. ...-.|+.++.--. .....
T Consensus 52 ~~~~~~~s~e~~~~~l~D--~~~r~~Wd~~~~e~~~ie~--~---d~-~~---~i~y~~~~~P~pvs~RDfV~--~r~~~ 118 (222)
T cd08871 52 SAIFPDVPAETLYDVLHD--PEYRKTWDSNMIESFDICQ--L---NP-NN---DIGYYSAKCPKPLKNRDFVN--LRSWL 118 (222)
T ss_pred EEEeCCCCHHHHHHHHHC--hhhhhhhhhhhceeEEEEE--c---CC-CC---EEEEEEeECCCCCCCCeEEE--EEEEE
Confidence 3456 5899999998864 33322222221 1112221 1 11 11 22232 22223456654222 12222
Q ss_pred EcCCCCeEEEEEeeeeCCCCCCCe-EE---EEEEEEEEeecCCceEEEEEEeeeeEEEeec--ceeeeeeehhhHHHHHH
Q 009741 418 LSPDKKIFVFETVQQAHDVPFGSY-FE---IHGRWHLETIAENSSTIDIKVVSAGAHFKKW--CVIQFKIKTGAVNKYKK 491 (527)
Q Consensus 418 ~~~~~~~~vi~~~~~~~dvPygd~-F~---v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~--t~~K~~Ie~~~~~~~~~ 491 (527)
.. ++.++++......+++|-..- -+ ....|.|++.++++|++... +.++..++ +|+-..+-+.+.-...+
T Consensus 119 ~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~---~~~Dp~G~IP~~lvN~~~~~~~~~~l~ 194 (222)
T cd08871 119 EF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYV---TQNDPKGSLPKWVVNKATTKLAPKVMK 194 (222)
T ss_pred eC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEE---EecCCCCCcCHHHHHHHHHHHhHHHHH
Confidence 22 245566666666677886554 22 34579999998899999998 88888773 34333333344445666
Q ss_pred HHHHHHHHHHHHHhhcCCCCC
Q 009741 492 EVELMLETARSYIKICTSGGE 512 (527)
Q Consensus 492 ~~~~~~~~~~~~l~~~~~~~~ 512 (527)
.+.+.+....+..+.+++...
T Consensus 195 ~l~k~~~~y~~~~~~~~~~~~ 215 (222)
T cd08871 195 KLHKAALKYPEWKAKNNPEFK 215 (222)
T ss_pred HHHHHHHHHHHHHHhcCCCCC
Confidence 666777777777777777665
No 146
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.08 E-value=0.82 Score=41.41 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=58.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~~----~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d~d 84 (527)
.++|+|+++.++...+ .++-||.+.+ +++.. .|..+.. .++.|||...|++ .+. ..+|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5789999999887543 4678888754 43322 3444443 6799999999985 332 456999999976
Q ss_pred CCC----CCceeEEEEEEcccC
Q 009741 85 IIW----KSTVLGSVIVTVESE 102 (527)
Q Consensus 85 ~~~----~d~~iG~~~i~l~~l 102 (527)
... ....+|.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 421 235699999988775
No 147
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.03 E-value=3.9 Score=36.02 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---EEeeee-cCCCCCeeccEEEEEec----C-----CCcEEE
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII 77 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~-~~t~nP~W~e~f~f~v~----~-----~~~~L~ 77 (527)
.....+.|.|.+..+++. .....|+....+... ..|... ..+-.-.|++.|.+.+. . ....+.
T Consensus 4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 346788899999998866 234455565555443 344433 33556789999988742 1 123489
Q ss_pred EEEEEcCCCCCCceeEEEEEEcccCC----CcccEEEEccCC-CceEEEEEEEeecccC
Q 009741 78 VTIYDWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSP-SGQVCLHIKTIKLPVN 131 (527)
Q Consensus 78 ~~V~d~d~~~~d~~iG~~~i~l~~l~----~~~~~w~~L~~~-~G~i~l~l~~~~~~~~ 131 (527)
|.|+....-++...+|.+.|+|.+.. .....-++|... .....+.|++....+.
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR 138 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence 99988753333368999999999982 234456667553 4444555555544443
No 148
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.03 E-value=0.72 Score=42.49 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=58.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d~d 84 (527)
.+.|+|+.+.+|... ....+-||.+.+ +++. ..|.....+..+.|+|.+.|++ .+. ..+|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 578999999998751 234566776543 4432 2455555556799999999985 332 456999999975
Q ss_pred CCC----------------CCceeEEEEEEcccC
Q 009741 85 IIW----------------KSTVLGSVIVTVESE 102 (527)
Q Consensus 85 ~~~----------------~d~~iG~~~i~l~~l 102 (527)
... .+..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 422 245788888877665
No 149
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=92.91 E-value=0.39 Score=40.16 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=62.7
Q ss_pred cceeEeEEEeeee-ccccceeEEeecceEEEEecc----C-Cc---------eeEEEEecccceeeeecccccccCcEEE
Q 009741 175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SR---------QMKVIIPIGDIDEIQRSQHAFINPAITI 239 (527)
Q Consensus 175 e~l~~~f~c~l~~-~~~~~Gr~yis~~~~cF~s~~----~-g~---------~~~~~i~~~~i~~i~k~~~~~~~~~i~i 239 (527)
|+++-+..|.+-. -....|++-||..+++|.... + +. .....+++++|.+|-+..-.+=..|++|
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi 80 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL 80 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence 4567788888877 556789999999999999631 1 11 1234789999999988774332349999
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009741 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~ 279 (527)
-... + .-.|-+|-+++...+++..
T Consensus 81 F~~d--------------~--~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 81 FLAS--------------R--TSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEeC--------------C--ceEEEEeCcHHHHHHHHhh
Confidence 8852 2 3356678888877766654
No 150
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.64 E-value=1.3 Score=40.03 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=57.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD 84 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~v--~~~--~~~L~~~V~d~d 84 (527)
.++|.+....++...+ ....+-||.+.+ +++. ..|.......++.|||...|++ .+. ...|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788877775521 234566666654 3332 2344444346899999999985 332 456999999987
Q ss_pred CCC--CCceeEEEEEEcccC
Q 009741 85 IIW--KSTVLGSVIVTVESE 102 (527)
Q Consensus 85 ~~~--~d~~iG~~~i~l~~l 102 (527)
..+ ++..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 654 467899999998775
No 151
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=91.63 E-value=7.9 Score=33.46 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=44.8
Q ss_pred CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHHHHH
Q 009741 423 KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARS 502 (527)
Q Consensus 423 ~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~ 502 (527)
..+.+..... +.+.......+|.|++. +++|+|... ..+.+.. .++.+.....-.-..+.+...++.+++
T Consensus 72 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~gT~v~~~---~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~ 141 (144)
T cd05018 72 ESYTITGEGK----GGAGFVKGTARVTLEPD-GGGTRLTYT---ADAQVGG--KLAQLGSRLIDGAARKLINQFFENLAS 141 (144)
T ss_pred cEEEEEEEEc----CCCceEEEEEEEEEEec-CCcEEEEEE---EEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566654332 12556789999999998 678999998 8887653 344444444444445555555555555
Q ss_pred HH
Q 009741 503 YI 504 (527)
Q Consensus 503 ~l 504 (527)
.+
T Consensus 142 ~~ 143 (144)
T cd05018 142 KI 143 (144)
T ss_pred hh
Confidence 43
No 152
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.45 E-value=0.92 Score=41.15 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeecCCCCCeeccEEEEEec--C--CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009741 33 GTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (527)
Q Consensus 33 g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l 102 (527)
..++-||.+.+ ++.. ..|....-+..+.|||...|++. + ....|.|+||+.+..++...+|.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 35677887764 3332 24555555677899999999863 3 2456999999988766678999999998775
No 153
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=91.30 E-value=10 Score=35.16 Aligned_cols=131 Identities=12% Similarity=0.172 Sum_probs=69.0
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEE-EecCCCCCCcceeEeEEEEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 416 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 416 (527)
.-...+++++++++|+++.. ...+.++........+. +..++ + ..+.|. .....|+.++..-. ..+.
T Consensus 43 ~k~~~~i~~s~e~v~~vi~d--~e~~~~w~~~~~~~~vi----e~~~~-~---~~i~~~~~~~p~pvs~Rdfv~--~~~~ 110 (195)
T cd08876 43 FKAVAEVDASIEAFLALLRD--TESYPQWMPNCKESRVL----KRTDD-N---ERSVYTVIDLPWPVKDRDMVL--RSTT 110 (195)
T ss_pred EEEEEEEeCCHHHHHHHHhh--hHhHHHHHhhcceEEEe----ecCCC-C---cEEEEEEEecccccCCceEEE--EEEE
Confidence 34456899999999999864 44444444433222221 11111 1 122332 22112233332211 2222
Q ss_pred EEcCCCCeEEEEEeeeeCCCCCCC----eEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehh
Q 009741 417 VLSPDKKIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTG 484 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~~dvPygd----~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~ 484 (527)
....++..++|.......++|-.. .+.....|.|++.++++|+|... ..+.+.. .+.+.+|...
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~---~~~dp~g-~iP~~lv~~~ 178 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQ---AYADPGG-SIPGWLANAF 178 (195)
T ss_pred EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEE---EEeCCCC-CCCHHHHHHH
Confidence 222213456665554433355332 35677889999999999999999 8887754 3444444443
No 154
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=91.19 E-value=11 Score=33.84 Aligned_cols=143 Identities=11% Similarity=0.099 Sum_probs=85.6
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 416 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~ 416 (527)
...+.+.++|+++||.++.. ...++.+.. ..-+.-++..++|.. ++..|.++|... || .....|++
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~----gGSIk~~~f~~~-----~~---~~~~Kekv 72 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGP----GGSIKKWTFGPG-----GP---FKYVKEKV 72 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSST----TT-EEEEEEETT-----SS---EEEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCC----CCeEEEEEecCC-----CC---cceeEEEE
Confidence 45567889999999999876 344555544 444566677788875 468899988752 44 23446788
Q ss_pred EEcCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehh-hHHHHHHHHHH
Q 009741 417 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTG-AVNKYKKEVEL 495 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~-~~~~~~~~~~~ 495 (527)
...++... .+..+..--| +.+++.+-.....+.+.++++|.++.. ++|.+- -+.. ..+...+.+..
T Consensus 73 e~~D~~~~-~~~y~viEGd-~l~~~~~~~~~~~~~~~~~g~~v~k~t-----~~Ye~~------~~~~~~p~~~~~~~~~ 139 (151)
T PF00407_consen 73 EAIDEENK-TITYTVIEGD-VLGDYKSFKSTIQKIPKGDGGCVVKWT-----IEYEKK------GEDVPPPEKYLDFAVG 139 (151)
T ss_dssp EEEETTTT-EEEEEEEEET-TGTTTEEEEEEEEEEEETTSCEEEEEE-----EEEEES------STSCHHHHHHHHHHHH
T ss_pred EeecCCCc-EEEEEEEecc-ccccEEEEEEEEEecCCCCCceEEEEE-----EEEEec------CCCCCCcHHHHHHHHH
Confidence 76544322 2223332233 345555555555555777777877766 444441 1222 34556666788
Q ss_pred HHHHHHHHHhh
Q 009741 496 MLETARSYIKI 506 (527)
Q Consensus 496 ~~~~~~~~l~~ 506 (527)
+++.+..+|-+
T Consensus 140 ~~K~ieayLla 150 (151)
T PF00407_consen 140 MFKAIEAYLLA 150 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888877754
No 155
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=90.67 E-value=13 Score=35.12 Aligned_cols=141 Identities=13% Similarity=0.201 Sum_probs=68.8
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEe---cCCCCCCcceeEeEEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSL---CKSPIYPRDTAMTESQ 414 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~---~~~~~gpk~~~~~~~Q 414 (527)
.-++.+++++++++|..++.| .....+ ++-.+...+.-+..+..++ +.|..- ...++.++. ....+
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d-~~~~~~-------Wd~~~~~~~~i~~~d~~~~-i~y~~~~~~~~~~vs~RD--fV~~r 118 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLN-VESLPS-------WNPTVLECKIIQVIDDNTD-ISYQVAAEAGGGLVSPRD--FVSLR 118 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcC-ccccce-------ecCcccceEEEEEecCCcE-EEEEEecCcCCCcccccc--eEEEE
Confidence 345679999999999988864 222111 1111111111111111222 344321 112344443 22223
Q ss_pred EEEEcCCCCeEEEEEeeeeCCCCCCCeE----EEEEEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHH
Q 009741 415 HAVLSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNK 488 (527)
Q Consensus 415 ~~~~~~~~~~~vi~~~~~~~dvPygd~F----~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~ 488 (527)
+.... ++.++++.....-+..|-..-| ...+.|.|++.++ ++|.+... +.++..+|- -+.++.+.+...
T Consensus 119 ~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~---~~~Dp~G~i-P~~lvN~~~~~~ 193 (208)
T cd08868 119 HWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWL---LNTDLKGWL-PQYLVDQALASV 193 (208)
T ss_pred EEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEE---EEECCCCCC-cceeeehhhHHH
Confidence 33333 3334444333333556644433 3558899999865 68999888 888777642 233444444444
Q ss_pred HHHHHH
Q 009741 489 YKKEVE 494 (527)
Q Consensus 489 ~~~~~~ 494 (527)
..+.+.
T Consensus 194 ~~~~~~ 199 (208)
T cd08868 194 LLDFMK 199 (208)
T ss_pred HHHHHH
Confidence 333333
No 156
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=89.32 E-value=19 Score=33.67 Aligned_cols=151 Identities=14% Similarity=0.184 Sum_probs=81.3
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCC-CCCCcceeEeEEEEEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS-PIYPRDTAMTESQHAV 417 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~-~~gpk~~~~~~~Q~~~ 417 (527)
-+..+++.++.++|..++.| .....++........+. +..++ +. +-+-+..+... |+.|+.--.. .+..
T Consensus 48 k~~~~v~~~~~~~~~~~~~d-~~~r~~Wd~~~~~~~~i----e~~~~-~~--~i~~~~~~~~~~p~~~RDfv~~--r~~~ 117 (206)
T smart00234 48 RAVGVVPMVCADLVEELMDD-LRYRPEWDKNVAKAETL----EVIDN-GT--VIYHYVSKFVAGPVSPRDFVFV--RYWR 117 (206)
T ss_pred EEEEEEecChHHHHHHHHhc-ccchhhCchhcccEEEE----EEECC-CC--eEEEEEEecccCcCCCCeEEEE--EEEE
Confidence 44578888888877766654 33322222222211111 11111 22 22223333223 5666542211 1122
Q ss_pred EcCCCCeEEEEEeeeeCCCCC-CCe---EEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHH
Q 009741 418 LSPDKKIFVFETVQQAHDVPF-GSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEV 493 (527)
Q Consensus 418 ~~~~~~~~vi~~~~~~~dvPy-gd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~ 493 (527)
...++.++++..+...+..|- ..+ ......|+|++.+++.|++... ..++..+| +-+.++...+.......+
T Consensus 118 ~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~---~~~D~~G~-iP~~lvn~~~~~~~~~~~ 193 (206)
T smart00234 118 ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWV---SHADLKGW-LPHWLVRSLIKSGLAEFA 193 (206)
T ss_pred EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEE---EEEecCCC-ccceeehhhhhhhHHHHH
Confidence 233444444444555566663 333 3456899999999999999999 99988876 346666666666666666
Q ss_pred HHHHHHHHHH
Q 009741 494 ELMLETARSY 503 (527)
Q Consensus 494 ~~~~~~~~~~ 503 (527)
+.|.+.+++.
T Consensus 194 ~~~~~~~~~~ 203 (206)
T smart00234 194 KTWVATLQKH 203 (206)
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 157
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=89.20 E-value=12 Score=34.84 Aligned_cols=145 Identities=14% Similarity=0.229 Sum_probs=80.5
Q ss_pred eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEE---EEecCCCCCCcceeEeEEEEE
Q 009741 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAF---RSLCKSPIYPRDTAMTESQHA 416 (527)
Q Consensus 340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y---~~~~~~~~gpk~~~~~~~Q~~ 416 (527)
+..+++.++.++|..++.+.. -|. .... ...--+.-++ + ..+.| ..|.-.|+.|+.--+ .+..
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~-~Wd---~~~~----~~~~le~~~~-~---~~i~~~~~~~~~~~p~~~RDfv~--~~~~ 115 (206)
T PF01852_consen 50 AEGVVPASPEQVVEDLLDDRE-QWD---KMCV----EAEVLEQIDE-D---TDIVYFVMKSPWPGPVSPRDFVF--LRSW 115 (206)
T ss_dssp EEEEESSCHHHHHHHHHCGGG-HHS---TTEE----EEEEEEEEET-T---EEEEEEEEE-CTTTTSSEEEEEE--EEEE
T ss_pred EEEEEcCChHHHHHHHHhhHh-hcc---cchh----hheeeeecCC-C---CeEEEEEecccCCCCCCCcEEEE--EEEE
Confidence 456889999989998887533 111 1111 1111111122 2 22333 233222555543222 2222
Q ss_pred EEcCCCCeEEEEEeeeeCCCCC--CCeEEEE---EEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHH
Q 009741 417 VLSPDKKIFVFETVQQAHDVPF--GSYFEIH---GRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK 491 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~~dvPy--gd~F~v~---~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~ 491 (527)
....++.++++......+..|- .++-+++ ..|+|++.+++.|++... +.++...|.. +.++..-+.....+
T Consensus 116 ~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~---~~~D~~G~iP-~~~~n~~~~~~~~~ 191 (206)
T PF01852_consen 116 RKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYV---SQVDPKGWIP-SWLVNMVVKSQPPN 191 (206)
T ss_dssp EECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEE---EEEESSSSSH-HHHHHHHHHHHHHH
T ss_pred EEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEE---EEECCCCCCh-HHHHHHHHHHhHHH
Confidence 2245566777777777777774 5555543 679999999999999999 8888766443 33444444445555
Q ss_pred HHHHHHHHHHH
Q 009741 492 EVELMLETARS 502 (527)
Q Consensus 492 ~~~~~~~~~~~ 502 (527)
.++.+.+.+++
T Consensus 192 ~~~~~~~~~~~ 202 (206)
T PF01852_consen 192 FLKNLRKALKK 202 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 158
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.97 E-value=2.1 Score=39.31 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=60.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----Eeeeec----CCCCCeeccEEEEEec--C--CCcEEEE
Q 009741 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP----GSRYPMWGEEFNFSVD--E--LPVQIIV 78 (527)
Q Consensus 13 ~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~~----~T~~~~----~t~nP~W~e~f~f~v~--~--~~~~L~~ 78 (527)
...+.|+|.++.+++........+-|+.+.+ +++.- .|+... -...+.|||...|++. + ...+|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3467888999999977654446778888754 43322 333221 1236789999999852 3 2456999
Q ss_pred EEEEcCCCC---------CCceeEEEEEEcccC
Q 009741 79 TIYDWDIIW---------KSTVLGSVIVTVESE 102 (527)
Q Consensus 79 ~V~d~d~~~---------~d~~iG~~~i~l~~l 102 (527)
++|+....+ .+..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 356899999888765
No 159
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=88.67 E-value=9.6 Score=34.85 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=66.1
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (527)
-...++++|+++++.+++.. ....++-. .+.....-..-+.+.......|..| .|+.|+.--+... ...
T Consensus 42 k~~~~i~~~~~~v~~~l~d~--~~~~~w~~-----~~~~~~vl~~~~~~~~i~~~~~~~p--~p~~~Rdfv~~~~--~~~ 110 (193)
T cd00177 42 KAEGVIPASPEQVFELLMDI--DLRKKWDK-----NFEEFEVIEEIDEHTDIIYYKTKPP--WPVSPRDFVYLRR--RRK 110 (193)
T ss_pred EEEEEECCCHHHHHHHHhCC--chhhchhh-----cceEEEEEEEeCCCeEEEEEEeeCC--CccCCccEEEEEE--EEE
Confidence 45678999999999998862 22121111 1111111111111112222233333 3466665332222 222
Q ss_pred cCCCCeEEEEEeeeeCCCCCC-CeEEEEE---EEEEEeecCCceEEEEEEeeeeEEEeec
Q 009741 419 SPDKKIFVFETVQQAHDVPFG-SYFEIHG---RWHLETIAENSSTIDIKVVSAGAHFKKW 474 (527)
Q Consensus 419 ~~~~~~~vi~~~~~~~dvPyg-d~F~v~~---r~~i~~~~~~~~~l~v~~~~~~V~f~K~ 474 (527)
..++.++++......+.+|-. ++-+... -|+|++.++++|++... +.++...+
T Consensus 111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~---~~~D~~g~ 167 (193)
T cd00177 111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYV---LQVDPKGS 167 (193)
T ss_pred cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEE---EeeCCCCC
Confidence 224556666555554446654 5555554 49999998999999999 88887764
No 160
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=87.35 E-value=19 Score=33.71 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=63.5
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEE-EEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQ-HAV 417 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q-~~~ 417 (527)
-.+.+++.++++++.+++.. ++.+|-.+..++.-+..+....-+-|..+...|+.++. ....+ ...
T Consensus 47 K~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RD--fV~~r~~~~ 113 (197)
T cd08869 47 RASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRD--YVVLRTWRT 113 (197)
T ss_pred EEEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCce--EEEEEEEEe
Confidence 45678999999999888631 23333333333332111111222334443323444432 22221 222
Q ss_pred EcCCCCeEEEEEeeee-CCCCCCC---eEEEEEEEEEEeecCCceEEEEEEeeeeEEEee
Q 009741 418 LSPDKKIFVFETVQQA-HDVPFGS---YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK 473 (527)
Q Consensus 418 ~~~~~~~~vi~~~~~~-~dvPygd---~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K 473 (527)
..+++.+++....... ..+|- + .+...+.|.|++.++++|+|... +.++..+
T Consensus 114 ~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~---~~~Dp~G 169 (197)
T cd08869 114 DLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHI---CRVDLRG 169 (197)
T ss_pred cCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEE---EEECCCC
Confidence 2333434333333322 25555 5 35566889999999999999999 9998877
No 161
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=85.97 E-value=16 Score=34.62 Aligned_cols=141 Identities=10% Similarity=0.084 Sum_probs=72.1
Q ss_pred eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCC---CCCcceeEeEEEEE
Q 009741 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSP---IYPRDTAMTESQHA 416 (527)
Q Consensus 340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~---~gpk~~~~~~~Q~~ 416 (527)
.+.++++++++++..+|.|-... .+. +-.+..-+.-...+..+ .+.|..-...| +.++.- ...+..
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~-~~W-------~~~~~~~~vl~~id~~~-~i~y~~~~p~p~~~vs~RD~--V~~~~~ 121 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQM-GEW-------NPNVKEVKILQRIGKDT-LITHEVAAETAGNVVGPRDF--VSVRCA 121 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhh-cee-------cccchHHHHHhhcCCCc-eEEEEEeccCCCCccCccce--EEEEEE
Confidence 67899999999998888752211 110 00000000101101111 23333221222 444432 223333
Q ss_pred EEcCCCCeEEEEEeeeeCCCCCCC-e---EEEEEEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHHHH
Q 009741 417 VLSPDKKIFVFETVQQAHDVPFGS-Y---FEIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK 490 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~~dvPygd-~---F~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~ 490 (527)
... ++.++++......+.+|--. + ....+.|.|++.++ ++|++... +.++..++ +-+.++.+...+...
T Consensus 122 ~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~---~~~DpkG~-iP~~lvN~~~~~~~~ 196 (209)
T cd08905 122 KRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL---LSIDLKGW-LPKSIINQVLSQTQV 196 (209)
T ss_pred EEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE---EeecCCCC-CCHHHHHHHhHHhHH
Confidence 333 34566666666556665333 3 33668999999976 78999988 88777554 334455544444444
Q ss_pred HHHHHH
Q 009741 491 KEVELM 496 (527)
Q Consensus 491 ~~~~~~ 496 (527)
+.+..+
T Consensus 197 ~~~~~L 202 (209)
T cd08905 197 DFANHL 202 (209)
T ss_pred HHHHHH
Confidence 444433
No 162
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=85.42 E-value=21 Score=30.34 Aligned_cols=102 Identities=11% Similarity=0.146 Sum_probs=52.2
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (527)
....++++|++.+|+++-.- .. +..+... ...+. +.......+..|.+.+. .| .. ..+++..
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~-~~-~~~w~~~--~~~~~---~~~~~~~~g~~~~~~~~------~g---~~--~~~~i~~ 65 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDF-GG-LHKWHPA--VASCE---LEGGGPGVGAVRTVTLK------DG---GT--VRERLLA 65 (140)
T ss_pred EEEEEECCCHHHHHHHHhCc-Cc-hhhhccC--cceEE---eecCCCCCCeEEEEEeC------CC---CE--EEEEehh
Confidence 45679999999999999752 22 2232221 11221 21111112344443322 22 11 2234433
Q ss_pred cCCC-CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEE
Q 009741 419 SPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK 463 (527)
Q Consensus 419 ~~~~-~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~ 463 (527)
..+. ..+.+..... +.|+ ......|.|+..++++|+|...
T Consensus 66 ~~~~~~~i~~~~~~~--~~~~---~~~~~~~~~~~~~~~~t~v~~~ 106 (140)
T cd07821 66 LDDAERRYSYRIVEG--PLPV---KNYVATIRVTPEGDGGTRVTWT 106 (140)
T ss_pred cCccCCEEEEEecCC--CCCc---ccceEEEEEEECCCCccEEEEE
Confidence 2222 4555443321 2343 3457899999998878888877
No 163
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=85.35 E-value=7.1 Score=36.07 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=42.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---EEeeeecCCCCCeeccEEEEEe--cC--CCcEEEEEEEEcC
Q 009741 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSV--DE--LPVQIIVTIYDWD 84 (527)
Q Consensus 15 ~L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~---~~T~~~~~t~nP~W~e~f~f~v--~~--~~~~L~~~V~d~d 84 (527)
.++|+|..+..+ ..+......-||.+.+ +... .+|....-+.+|.|||...|++ .+ ...+|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 466777777643 2222223345555533 3332 2566666667899999998885 33 2456999999974
No 164
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=85.01 E-value=2.4 Score=34.40 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=34.4
Q ss_pred cceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEE
Q 009741 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL 241 (527)
Q Consensus 191 ~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~ 241 (527)
-.|++|+|.+.+||--+.-.....+.+|+++|..++...+.+ ..+-+|+.
T Consensus 36 q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l 85 (89)
T PF11605_consen 36 QNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL 85 (89)
T ss_dssp SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred cCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence 479999999999997554333447999999999996665443 33444443
No 165
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=83.79 E-value=3.1 Score=45.54 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=61.3
Q ss_pred eEEEeeeeccccceeEEee----cceEEEEeccC------------CceeEEEEecccceeeeeccccccc---------
Q 009741 180 SYSCVIERSFLYHGRMYVS----AWHICFHSNAF------------SRQMKVIIPIGDIDEIQRSQHAFIN--------- 234 (527)
Q Consensus 180 ~f~c~l~~~~~~~Gr~yis----~~~~cF~s~~~------------g~~~~~~i~~~~i~~i~k~~~~~~~--------- 234 (527)
.|.|-|..+. |.+||+ .=.++|.+... .....+.||+.||.+++|..+.+.-
T Consensus 520 ~F~AR~~Gkk---G~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~ 596 (642)
T PF11696_consen 520 EFPARYKGKK---GHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL 596 (642)
T ss_pred eeeeecCCcc---ceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence 4889998764 999999 34689987511 2356799999999999999876321
Q ss_pred ------CcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHH
Q 009741 235 ------PAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280 (527)
Q Consensus 235 ------~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~~~~~l~~~ 280 (527)
.+++|+ ++ .| ..|.++-...||+.|+.|-.+
T Consensus 597 g~kEv~DGL~I~g~~--------------~g-~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 597 GEKEVVDGLVIVGDE--------------PG-QEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred CCcccccceEEeccC--------------CC-CEEEEEecchHHHHHHHHHhc
Confidence 244444 32 34 588999999999999877653
No 166
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=83.11 E-value=12 Score=33.10 Aligned_cols=54 Identities=30% Similarity=0.374 Sum_probs=39.8
Q ss_pred EeeeecCC-CCCeeccEEEEEe--cC--CCcEEEEEEEEcCCCCCC----ceeEEEEEEcccC
Q 009741 49 FSSMVPGS-RYPMWGEEFNFSV--DE--LPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE 102 (527)
Q Consensus 49 ~T~~~~~t-~nP~W~e~f~f~v--~~--~~~~L~~~V~d~d~~~~d----~~iG~~~i~l~~l 102 (527)
.|....-+ .++.|+|...|++ .+ ....|.|+||..+..... ..||-+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 7999999999985 33 255699999998876555 6899999998776
No 167
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.73 E-value=32 Score=30.10 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=42.6
Q ss_pred CCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEee--cceeeeeeehhhHHHHHHHHHHHHHH
Q 009741 422 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK--WCVIQFKIKTGAVNKYKKEVELMLET 499 (527)
Q Consensus 422 ~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K--~t~~K~~Ie~~~~~~~~~~~~~~~~~ 499 (527)
...+.+.-. -.+.+-+....+...|.++. .+++|+|.+. ..+.+.. ..+++.+|.+ -..+.++.+++.
T Consensus 70 ~~~~~~~~~--g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~---~~~~~~g~l~~l~~~~v~~----~~~~~~~~~~~~ 139 (146)
T cd07823 70 ARRAVLEAT--GKDARGQGTAEATVTLRLSP-AGGGTRVTVD---TDLALTGKLAQFGRGGIGD----VAGRLLAQFAAN 139 (146)
T ss_pred CcEEEEEEE--EecCCCcceEEEEEEEEEEe-cCCcEEEEEE---EEEEEeeEhHHhChhHHHH----HHHHHHHHHHHH
Confidence 345554422 23344455668899999998 5578999999 8887765 3455444444 333334444444
Q ss_pred HHHH
Q 009741 500 ARSY 503 (527)
Q Consensus 500 ~~~~ 503 (527)
+++.
T Consensus 140 l~~~ 143 (146)
T cd07823 140 LEAR 143 (146)
T ss_pred HHHH
Confidence 4433
No 168
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=82.56 E-value=14 Score=34.65 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=38.7
Q ss_pred EEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-CC---CceeEEEEEEcc
Q 009741 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-WK---STVLGSVIVTVE 100 (527)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~-~~---d~~iG~~~i~l~ 100 (527)
..+|-+...+.+|.|+|++.+.+.. ....|.|++++.... .+ ...+|-+.++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4578888889999999999998753 345699999886421 12 245777777665
No 169
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=82.25 E-value=17 Score=35.30 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=52.1
Q ss_pred CeEEEEEeeeeCCCCCC-CeEEEEE---------------EEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhH
Q 009741 423 KIFVFETVQQAHDVPFG-SYFEIHG---------------RWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 486 (527)
Q Consensus 423 ~~~vi~~~~~~~dvPyg-d~F~v~~---------------r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~ 486 (527)
.++++..+..-+.+|-. ++-++.. .|.+++ .+.+|++... +.++.-+|- -.++|...+.
T Consensus 136 ~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~---~~~dPgG~i-P~wvvn~~~k 210 (235)
T cd08872 136 TWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYV---ANVNPGGWA-PASVLRAVYK 210 (235)
T ss_pred eEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEE---EEeCCCCCc-cHHHHHHHHH
Confidence 34666666666777766 6666764 255566 4678888887 777665532 2556666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 009741 487 NKYKKEVELMLETARSYIKIC 507 (527)
Q Consensus 487 ~~~~~~~~~~~~~~~~~l~~~ 507 (527)
.+.-+.++.+-..+++..+.+
T Consensus 211 ~~~P~~l~~~~~~~~~~~~~~ 231 (235)
T cd08872 211 REYPKFLKRFTSYVQEKTKGK 231 (235)
T ss_pred hhchHHHHHHHHHHHHhcCCC
Confidence 777777777777777766544
No 170
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=81.75 E-value=39 Score=31.93 Aligned_cols=141 Identities=11% Similarity=0.112 Sum_probs=71.2
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEecccee-cCCCCCeEEEEEEEEec---CCCCCCcceeEeEEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHA-ADEYDGQVREVAFRSLC---KSPIYPRDTAMTESQ 414 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~-~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~Q 414 (527)
-++.+++++++++|+.|+.. ....+ -+.++....+-. -++ .+ .|.|..-- ...++|+. ....+
T Consensus 49 k~egvi~~~~e~v~~~l~~~--e~r~~-----Wd~~~~~~~iie~Id~---~T-~I~~~~~~~~~~~~vspRD--fV~vr 115 (204)
T cd08904 49 RVEGIIPESPAKLIQFMYQP--EHRIK-----WDKSLQVYKMLQRIDS---DT-FICHTITQSFAMGSISPRD--FVDLV 115 (204)
T ss_pred EEEEEecCCHHHHHHHHhcc--chhhh-----hcccccceeeEEEeCC---Cc-EEEEEecccccCCcccCce--EEEEE
Confidence 56789999999999998752 11111 111222222211 111 11 23443211 12366764 22233
Q ss_pred EEEEcCCCCeEEEEEeeeeCCCC-CCCe---EEEEEEEEEEeecC--CceEEEEEEeeeeEEEeecceeeeeeehhhHHH
Q 009741 415 HAVLSPDKKIFVFETVQQAHDVP-FGSY---FEIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNK 488 (527)
Q Consensus 415 ~~~~~~~~~~~vi~~~~~~~dvP-ygd~---F~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~ 488 (527)
+.....++.+++....+.-+..| =.++ +..-+-|++.+..+ ++|++..+ ..++..+| +-+++|++.--..
T Consensus 116 ~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~---~~~DlkG~-lP~~vv~~~~~~~ 191 (204)
T cd08904 116 HIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMF---VQPELRGN-LSRSVIEKTMPTN 191 (204)
T ss_pred EEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEE---EEeCCCCC-CCHHHHHHHhHHH
Confidence 33232334444444444444444 2333 44556799999876 47999888 87766543 3366666554444
Q ss_pred HHHHHHHH
Q 009741 489 YKKEVELM 496 (527)
Q Consensus 489 ~~~~~~~~ 496 (527)
+.+.+..+
T Consensus 192 ~~~f~~~~ 199 (204)
T cd08904 192 LVNLILDA 199 (204)
T ss_pred HHHHHHHH
Confidence 44444443
No 171
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=80.83 E-value=41 Score=31.90 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=72.6
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEec---CCCCCCcceeEeEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLC---KSPIYPRDTAMTES 413 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~---~~~~gpk~~~~~~~ 413 (527)
.-.+.++++|++.+|..+|.|-... .+.. ......-+.. . +... .+.|.... ..|+.++. ....
T Consensus 51 fk~~~~v~~~~~~l~~~ll~D~~~~-~~W~~~~~~~~vi~~-----~---~~~~-~i~Y~v~~p~~~~pv~~RD--fV~~ 118 (209)
T cd08906 51 FILKAFMQCPAELVYQEVILQPEKM-VLWNKTVSACQVLQR-----V---DDNT-LVSYDVAAGAAGGVVSPRD--FVNV 118 (209)
T ss_pred EEEEEEEcCCHHHHHHHHHhChhhc-cccCccchhhhheee-----c---cCCc-EEEEEEccccccCCCCCCc--eEEE
Confidence 3567889999999998777643211 1100 0111111111 1 1112 23453221 12344433 2222
Q ss_pred EEEEEcCCCCeEEEEEeeeeCCCCCC-CeEEEE---EEEEEEe--ecCCceEEEEEEeeeeEEEeecceeeeeeehhhHH
Q 009741 414 QHAVLSPDKKIFVFETVQQAHDVPFG-SYFEIH---GRWHLET--IAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVN 487 (527)
Q Consensus 414 Q~~~~~~~~~~~vi~~~~~~~dvPyg-d~F~v~---~r~~i~~--~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~ 487 (527)
....... +.++++..+...+.+|-- ++-+++ +.|.+.+ .++++|++... +.++..+ .+=+.+|.+...+
T Consensus 119 r~~~~~~-~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~---~~~Dp~G-~lP~~lvN~~~~~ 193 (209)
T cd08906 119 RRIERRR-DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWI---LNTDLKG-RLPRYLIHQSLAA 193 (209)
T ss_pred EEEEecC-CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EecCCCC-CCCHHHHHHHHHH
Confidence 3333333 335566666665666643 444444 4566665 46788999888 7777655 3335566665555
Q ss_pred HHHHHHHHHHHHH
Q 009741 488 KYKKEVELMLETA 500 (527)
Q Consensus 488 ~~~~~~~~~~~~~ 500 (527)
...+.++.+=+.+
T Consensus 194 ~~~~~~~~LR~~~ 206 (209)
T cd08906 194 TMFEFASHLRQRI 206 (209)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 172
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.38 E-value=15 Score=34.16 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=38.6
Q ss_pred EEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC--CceeEEEEEEccc
Q 009741 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK--STVLGSVIVTVES 101 (527)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~~~--d~~iG~~~i~l~~ 101 (527)
..+|-+...+.+|.|+|++.+.+.. ....|.|++++.....+ ...+|-+.++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 4578888999999999999999754 24569999988543211 1456666666643
No 173
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=78.80 E-value=21 Score=32.59 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=57.1
Q ss_pred CCCcEEEEEECCeEE-Eeeee--cCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCc-----
Q 009741 34 TSDPYAIITCGSEKR-FSSMV--PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQT----- 105 (527)
Q Consensus 34 ~~dPyv~v~~~~~~~-~T~~~--~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l~~~----- 105 (527)
...-|+++.++++.. +|+.. .....-.|++.|.+.+..-+..|.++||.... ..+..|+++.+++-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccC
Confidence 345688888876654 44443 23344567899999988778889999999887 6788999999998766322
Q ss_pred -ccEEEEcc
Q 009741 106 -GAVWYTLD 113 (527)
Q Consensus 106 -~~~w~~L~ 113 (527)
...|+.+.
T Consensus 115 ~~~~~~eFs 123 (168)
T PF15625_consen 115 VPLEEYEFS 123 (168)
T ss_pred CceEeEEEc
Confidence 45566664
No 174
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=78.21 E-value=11 Score=29.71 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=36.7
Q ss_pred ceeEEeecce--EEEEeccCCceeEEEEecccceeeeecccccccC--cEEEEEec
Q 009741 192 HGRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRM 243 (527)
Q Consensus 192 ~Gr~yis~~~--~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~--~i~i~~~~ 243 (527)
.|.||++..+ +-|-.+--+....+.|+|.+|...+..+-. .+ .++|..+.
T Consensus 13 ~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~--s~Kv~Lki~~~~ 66 (79)
T PF08567_consen 13 DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG--SPKVMLKIVLKD 66 (79)
T ss_dssp EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT--SSTEEEEEEETT
T ss_pred CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC--CcceEEEEEEec
Confidence 5999999999 999886544445899999999999988754 23 45666643
No 175
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=77.90 E-value=12 Score=34.67 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=33.5
Q ss_pred EEeeeecCCCCCeeccEEEEEecCC---CcEEEEEEEEcCCCCC---CceeEEEEEEcccC
Q 009741 48 RFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWDIIWK---STVLGSVIVTVESE 102 (527)
Q Consensus 48 ~~T~~~~~t~nP~W~e~f~f~v~~~---~~~L~~~V~d~d~~~~---d~~iG~~~i~l~~l 102 (527)
..|.+..++.+|.|+|+|.+.+... ...|.|++++...-.+ ...+|.+.++|-+-
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~ 121 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDN 121 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-T
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeC
Confidence 4577778889999999999998542 4569999999764322 26899999998883
No 176
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=77.64 E-value=64 Score=30.42 Aligned_cols=149 Identities=11% Similarity=0.122 Sum_probs=78.9
Q ss_pred eeeeee-ecCHHHHHHHhcCCCCchHHHHHHHcCC-cceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEE
Q 009741 339 IYNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKD-SNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 416 (527)
Q Consensus 339 ~~~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~~~-~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~ 416 (527)
....+| ++|++.|++++.. ..+..+.-..... ..+. ..+. ...+-+-|....--|+.++.--.. .+.
T Consensus 53 k~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~le-----~~~~--~~~~i~y~~~~~P~P~s~RD~V~~--r~~ 121 (209)
T cd08870 53 LVRGVFEDCTPELLRDFYWD--DEYRKKWDETVIEHETLE-----EDEK--SGTEIVRWVKKFPFPLSDREYVIA--RRL 121 (209)
T ss_pred EEEEEEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEEE-----ecCC--CCcEEEEEEEECCCcCCCceEEEE--EEE
Confidence 445678 6799999999976 3433333322221 2222 1111 012333333433345666542222 222
Q ss_pred EEcCCCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEee--cCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHH
Q 009741 417 VLSPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETI--AENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK 491 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~~dvPygd~F~---v~~r~~i~~~--~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~ 491 (527)
....++.++++.....-+.+|-.+.-+ ....|+|++. ++++|.+.+. +...= +..+-+.++...+......
T Consensus 122 ~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~---~~~dp-~G~IP~wlvN~~~~~~~~~ 197 (209)
T cd08870 122 WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVT---YFHNP-DGGIPRELAKLAVKRGMPG 197 (209)
T ss_pred EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEE---EEECC-CCCCCHHHHHHHHHhhhHH
Confidence 222244455555555556788753333 4578999999 7778887777 55542 4444455555555556656
Q ss_pred HHHHHHHHHHH
Q 009741 492 EVELMLETARS 502 (527)
Q Consensus 492 ~~~~~~~~~~~ 502 (527)
.++.|-+.+++
T Consensus 198 ~l~~l~~a~~~ 208 (209)
T cd08870 198 FLKKLENALRK 208 (209)
T ss_pred HHHHHHHHHhc
Confidence 66555555443
No 177
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=77.29 E-value=58 Score=30.76 Aligned_cols=117 Identities=9% Similarity=0.113 Sum_probs=62.9
Q ss_pred eeeeee-cCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741 340 YNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (527)
Q Consensus 340 ~~~~~~-~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (527)
...+|+ ++++.|++++.. ..+..+....... -+.. .++ + .+.+-|....--|+.++.--+... ....
T Consensus 53 ~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~-~~~~-----~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~-~~~~ 120 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMD--LEYRKQWDQYVKE-LYEK-----ECD-G--ETVIYWEVKYPFPLSNRDYVYIRQ-RRDL 120 (207)
T ss_pred EEEEEcCCCHHHHHHHHhC--HHHHHHHHHHHHh-heee-----cCC-C--CEEEEEEEEcCCCCCCceEEEEEE-eccc
Confidence 356888 899999999875 4443322222111 0111 111 1 233333344445677765432221 1222
Q ss_pred cCCCC-e-EEEEEeeeeCCCCCCCeE----EEEEEEEEEeecCCceEEEEEEeeeeEEE
Q 009741 419 SPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHF 471 (527)
Q Consensus 419 ~~~~~-~-~vi~~~~~~~dvPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f 471 (527)
..++. . +++.....-+.+|-.+-| .....|+|++.++++|++... +..+-
T Consensus 121 ~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~---~~~DP 176 (207)
T cd08910 121 DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMY---YFDNP 176 (207)
T ss_pred cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEE---EEeCC
Confidence 22332 2 334444455677765433 367899999988888999888 77654
No 178
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=77.23 E-value=32 Score=32.55 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=64.6
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (527)
-...+++.++.++..++..+ ..-|.... ..|..-++.+....-+-|....--|+-++.- |........
T Consensus 55 r~~~~i~a~~~~vl~~lld~-~~~Wd~~~----------~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~-V~~Rs~~~~ 122 (204)
T cd08908 55 RTTIEVPAAPEEILKRLLKE-QHLWDVDL----------LDSKVIEILDSQTEIYQYVQNSMAPHPARDY-VVLRTWRTN 122 (204)
T ss_pred EEEEEeCCCHHHHHHHHHhh-HHHHHHHh----------hheEeeEecCCCceEEEEEccCCCCCCCcEE-EEEEEEEEe
Confidence 45678999999999888765 22222211 1122211111222333333332233333321 111122222
Q ss_pred cCCCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEeecCCceEEEEEEeeeeEEEee
Q 009741 419 SPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVVSAGAHFKK 473 (527)
Q Consensus 419 ~~~~~~~vi~~~~~~~dvPygd~F~---v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K 473 (527)
..++.+.++..+..-..+|-. .-+ +.++|.|++.++++|+|.-- ++++..+
T Consensus 123 ~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~g~t~vtyi---~~~DPgG 176 (204)
T cd08908 123 LPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGSGKSKLTYM---CRIDLRG 176 (204)
T ss_pred CCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCCCcEEEEEE---EEeCCCC
Confidence 344444444443666678855 444 47899999999999999998 8888765
No 179
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=76.02 E-value=23 Score=33.41 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=44.0
Q ss_pred CCCCeEEEEEeeeeCCCCCCC---eEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecc
Q 009741 420 PDKKIFVFETVQQAHDVPFGS---YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWC 475 (527)
Q Consensus 420 ~~~~~~vi~~~~~~~dvPygd---~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t 475 (527)
+.+.++++..+..-++.|.-. .-...++|.|++.++++|+|.-- ++|.+.+++
T Consensus 124 ~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi---~rvD~rG~~ 179 (205)
T cd08907 124 PRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHI---CRADLRGRS 179 (205)
T ss_pred CCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEE---EEeCCCCCC
Confidence 345688888888878888765 56778999999999999999999 999998743
No 180
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=74.59 E-value=82 Score=30.50 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=63.7
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHH-HHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 416 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~ 416 (527)
.-.+.++++|++++|++|..- ....+.- .......+..-. ++ . .-+..+.|.--|+.|+.--. .....
T Consensus 79 fk~e~~vd~s~~~v~dlL~D~--~~R~~WD~~~~e~evI~~id----~d-~---~iyy~~~p~PwPvk~RDfV~-~~s~~ 147 (235)
T cd08873 79 FCVELKVQTCASDAFDLLSDP--FKRPEWDPHGRSCEEVKRVG----ED-D---GIYHTTMPSLTSEKPNDFVL-LVSRR 147 (235)
T ss_pred EEEEEEecCCHHHHHHHHhCc--chhhhhhhcccEEEEEEEeC----CC-c---EEEEEEcCCCCCCCCceEEE-EEEEE
Confidence 345677999999999999652 2212211 112112222111 11 1 22223334323566664222 22222
Q ss_pred EEcCCCCeEEEEEeeee-CCCCCCCeE----EEEEEEEEEeecCCceEEEEEEeeeeEE
Q 009741 417 VLSPDKKIFVFETVQQA-HDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAH 470 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~-~dvPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~ 470 (527)
...+++..|+|...... +.+|-..-| .+.+.|.|++.++++|+|... .+++
T Consensus 148 ~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~---~~~d 203 (235)
T cd08873 148 KPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYY---NETN 203 (235)
T ss_pred eccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEE---EEcC
Confidence 22333345776666665 556554443 467899999999999999887 5554
No 181
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=74.20 E-value=19 Score=29.68 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=44.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeccEEEEEe--cC--CCcEEEEEEEEcCC
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSV--DE--LPVQIIVTIYDWDI 85 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~f~v--~~--~~~~L~~~V~d~d~ 85 (527)
+.+.+....++........++-||.+.+ +++. ..|....-...+.|||...|++ .+ ....|.|++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4466666666654432323578888764 4332 2455555566799999999875 33 24569999998653
No 182
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=72.67 E-value=35 Score=32.33 Aligned_cols=123 Identities=10% Similarity=0.005 Sum_probs=66.4
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEE-EecCCCCCCcceeEeEEEEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 416 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 416 (527)
.-++.+++.++..+..++.. .+...+....+..... + ... +.. ..+.|. ..+--|++.+..-+. .+.+
T Consensus 48 ~k~e~~i~~~~~~~~~vl~d--~~~~~~W~p~~~~~~~-l---~~~---~~~-~~v~y~~~~~PwPv~~RD~v~~-~~~~ 116 (215)
T cd08877 48 LRMEGEIDGPLFNLLALLNE--VELYKTWVPFCIRSKK-V---KQL---GRA-DKVCYLRVDLPWPLSNREAVFR-GFGV 116 (215)
T ss_pred EEEEEEecCChhHeEEEEeh--hhhHhhhcccceeeEE-E---eec---CCc-eEEEEEEEeCceEecceEEEEE-EEEE
Confidence 45678999999999888865 3333332222111111 0 011 111 234443 222344666654433 3444
Q ss_pred EEcCCCCeEEEEEeeeeC--C--------CCCCC-----eEEEEEEEEEEeecCCceEEEEEEeeeeEEEeec
Q 009741 417 VLSPDKKIFVFETVQQAH--D--------VPFGS-----YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKW 474 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~~--d--------vPygd-----~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~ 474 (527)
....++..++|....... + +|-.. .-.....|.|++.++++|++... +.++-..+
T Consensus 117 ~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~---~~~DP~g~ 186 (215)
T cd08877 117 DRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFV---ANVDPKMS 186 (215)
T ss_pred eeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEE---EEcCCCcc
Confidence 433123345554443321 2 56554 24577889999999999999999 87765544
No 183
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=72.55 E-value=88 Score=29.58 Aligned_cols=119 Identities=12% Similarity=0.041 Sum_probs=62.1
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCC--CCcceeEeEEEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPI--YPRDTAMTESQH 415 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~--gpk~~~~~~~Q~ 415 (527)
...+.+++.++++++++|.. .....++-......++-. +.+ ...+.+.++.+.--|+ -|+.- ...+.
T Consensus 47 ~~ge~~v~as~~~v~~ll~D--~~~r~~Wd~~~~~~~vl~---~~~----~d~~i~y~~~~~Pwp~~~~~RDf--V~l~~ 115 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKD--PRTRFLYDTMIKTARIHK---TFT----EDICLVYLVHETPLCLLKQPRDF--CCLQV 115 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhC--cchhhhhHHhhhheeeee---ecC----CCeEEEEEEecCCCCCCCCCCeE--EEEEE
Confidence 34577899999999999954 221111111222222211 111 2223344444322222 44432 22233
Q ss_pred EEEcCCCCeEEEEEeeeeC-CCCCC-----CeEEEEEEEEEEee---cCCceEEEEEEeeeeEEEe
Q 009741 416 AVLSPDKKIFVFETVQQAH-DVPFG-----SYFEIHGRWHLETI---AENSSTIDIKVVSAGAHFK 472 (527)
Q Consensus 416 ~~~~~~~~~~vi~~~~~~~-dvPyg-----d~F~v~~r~~i~~~---~~~~~~l~v~~~~~~V~f~ 472 (527)
... .++ .++|....... .+|-- =-+.+...|.|++. ++++|+|.-. ++++=.
T Consensus 116 ~~~-~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~---~q~DPg 176 (205)
T cd08874 116 EAK-EGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYI---AQVALC 176 (205)
T ss_pred EEE-CCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEE---EEECCC
Confidence 333 333 33454444433 56633 24677889999999 8889999888 776543
No 184
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=70.35 E-value=63 Score=30.61 Aligned_cols=119 Identities=12% Similarity=0.146 Sum_probs=66.9
Q ss_pred eeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEcC
Q 009741 341 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 420 (527)
Q Consensus 341 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~ 420 (527)
..+++.++.++...+.. .|..+|-.+..|..-+.....+--+-|...--.|+-++. -|.....-...+
T Consensus 57 ~~ei~~~p~~VL~~vl~-----------~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD-~v~~R~w~~~~~ 124 (205)
T cd08909 57 SVEVEAPPSVVLNRVLR-----------ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRD-FVVLRSWRTDLP 124 (205)
T ss_pred EEEeCCCHHHHHHHHHh-----------hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCE-EEEEEEEEEeCC
Confidence 56778888888776644 234344444444443321222333445543111332222 111111111224
Q ss_pred CCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEeecCCceEEEEEEeeeeEEEeec
Q 009741 421 DKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVVSAGAHFKKW 474 (527)
Q Consensus 421 ~~~~~vi~~~~~~~dvPygd~F~---v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~ 474 (527)
+|.+.++..+..-++.|.-+..+ ..++|.|++.++++|+|.-- ++|++.++
T Consensus 125 ~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i---~~vDpkG~ 178 (205)
T cd08909 125 KGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHI---CRVDLKGH 178 (205)
T ss_pred CCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEE---EEecCCCC
Confidence 56666666666666676655444 45899999999999999999 99998774
No 185
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.85 E-value=22 Score=38.53 Aligned_cols=90 Identities=22% Similarity=0.370 Sum_probs=65.2
Q ss_pred ccccccccCccc-ceeEeEEEeeeeccccceeEEeecceEEEEeccCCceeEEEEecccceeeeeccccccc-C--cEEE
Q 009741 164 PLQTIFNLLPDE-FVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN-P--AITI 239 (527)
Q Consensus 164 ~f~~~F~lp~~e-~l~~~f~c~l~~~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~-~--~i~i 239 (527)
.+...|-+-++| ..-..|-|.+.- ...|.++||+-.|+|.+..-+..-.+.+||.-|..|+|..++.-. | .|+|
T Consensus 29 ~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i 106 (717)
T KOG4471|consen 29 NLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEI 106 (717)
T ss_pred cccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEE
Confidence 355566544454 334457777774 667999999999999998877777899999999999999866432 2 6788
Q ss_pred EEecCCCCCCCCCCCCCCCceeEEEeeee
Q 009741 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFW 268 (527)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~ 268 (527)
.+++ ..+.++-|..+-
T Consensus 107 ~CKD-------------mr~lR~~fk~~~ 122 (717)
T KOG4471|consen 107 TCKD-------------MRNLRCAFKQEE 122 (717)
T ss_pred Eecc-------------ccceeeecCccc
Confidence 8764 345667676663
No 186
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=67.81 E-value=13 Score=27.22 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=30.0
Q ss_pred ceeEEeecceEEEEeccCCceeEEEEecccceeeee
Q 009741 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227 (527)
Q Consensus 192 ~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k 227 (527)
-|++++|.-.+.+||..- ....+.||+-.|.+|..
T Consensus 20 ~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~ 54 (55)
T smart00683 20 LGVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV 54 (55)
T ss_pred eeEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence 499999999999999874 57889999999988753
No 187
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=67.49 E-value=81 Score=29.58 Aligned_cols=124 Identities=7% Similarity=0.046 Sum_probs=59.5
Q ss_pred eeeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEec--CCCCCCcceeEeEEEE
Q 009741 338 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC--KSPIYPRDTAMTESQH 415 (527)
Q Consensus 338 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~--~~~~gpk~~~~~~~Q~ 415 (527)
.-+..++++++++++.+++........+.........+- +..+ ..+.-+.|..|- ..++.++. ....+.
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~l----e~id---~~~~i~~~~~p~~~~~~vs~RD--fV~~~~ 118 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVL----EKIS---EDLCVGRTITPSAAMGLISPRD--FVDLVY 118 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEE----EEeC---CCeEEEEEEccccccCccCCcc--eEEEEE
Confidence 355679999999999988862211111111111111110 1111 112222233332 11234432 222333
Q ss_pred EEEcCCCCeEEEEEeeeeCCCCCC-CeE---EEEEEEEEEeec--CCceEEEEEEeeeeEEEee
Q 009741 416 AVLSPDKKIFVFETVQQAHDVPFG-SYF---EIHGRWHLETIA--ENSSTIDIKVVSAGAHFKK 473 (527)
Q Consensus 416 ~~~~~~~~~~vi~~~~~~~dvPyg-d~F---~v~~r~~i~~~~--~~~~~l~v~~~~~~V~f~K 473 (527)
.....++.+++.-.+..-+..|-- ++- ...+.|.+++.. +++|.+... +.++..+
T Consensus 119 ~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~---~~~DpkG 179 (206)
T cd08867 119 VKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLY---VQTDLRG 179 (206)
T ss_pred EEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEE---EEeccCC
Confidence 344444434343344433556543 333 345688898765 467888888 8887755
No 188
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.32 E-value=1.6 Score=47.72 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=66.8
Q ss_pred CCCCCcEEEEEECCeEE-EeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCccc
Q 009741 32 NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQTGA 107 (527)
Q Consensus 32 ~g~~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l---~~~~~ 107 (527)
....+||+.+.+..... .+.+.+.+..|.|+++|..++.. ...+.|.|+.......+.+..++++..+++ .....
T Consensus 25 ~~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 25 LQALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 34568999888764333 55567788999999999999765 677888888876655665555555555544 23456
Q ss_pred EEEEccCCCceEEEEEEEeecc
Q 009741 108 VWYTLDSPSGQVCLHIKTIKLP 129 (527)
Q Consensus 108 ~w~~L~~~~G~i~l~l~~~~~~ 129 (527)
.|..+.+ .|.+...+.+....
T Consensus 104 ~w~~~~~-~g~~~~~~~~~~~~ 124 (694)
T KOG0694|consen 104 LWVLIEE-LGTLLKPAALTGTL 124 (694)
T ss_pred hcccccc-ccceeeeecccCcC
Confidence 7999875 68877666655433
No 189
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.00 E-value=11 Score=31.51 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=46.2
Q ss_pred ccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccc-cccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeee
Q 009741 190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (527)
Q Consensus 190 ~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf 267 (527)
.-+|++-|-..-+-||.+. ..+.-+.|||++|..|-..-.. -+.+...|.|. .+-+|.|+|=
T Consensus 22 ~~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td---------------~~gk~~FaSk 84 (122)
T COG4687 22 AEYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTD---------------TQGKVRFASK 84 (122)
T ss_pred hhcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEc---------------CCceEEEEeC
Confidence 3479999998888887654 4578889999999877765443 36677778874 3458999885
No 190
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=63.76 E-value=42 Score=28.54 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=41.1
Q ss_pred ccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccc--cccCcEEEEEec
Q 009741 188 SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA--FINPAITIILRM 243 (527)
Q Consensus 188 ~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~--~~~~~i~i~~~~ 243 (527)
.+..+|++.|-.+-+=||.+.- .+--+.|||++|..|...-.. ...+...|.|++
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n-~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~ 76 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRN-VEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK 76 (118)
T ss_pred cccccCeEEEcccceEeecCCC-hhhcEEeChhheeEEEEEEEECCCEEeeEEEEECC
Confidence 3557899999999999987642 356789999999999876542 234557888864
No 191
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=61.39 E-value=1.5e+02 Score=27.98 Aligned_cols=145 Identities=11% Similarity=0.099 Sum_probs=71.2
Q ss_pred eeee-ecCHHHHHHHhcCCCCchHHHHHHHcCCcc-eEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEE
Q 009741 341 NDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKDSN-LVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL 418 (527)
Q Consensus 341 ~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~-~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~ 418 (527)
..+| ++|+++|++++.. ..+..+.-....... +.. ..+ ..++-+-+....-.|+-++..-. ..++..
T Consensus 50 ~~~~~d~s~~~~~~~~~D--~~~r~~Wd~~~~~~~~le~-----~~~--~~~~i~y~~~~~P~P~s~RD~V~--~r~~~~ 118 (207)
T cd08911 50 YGSFDDVTARDFLNVQLD--LEYRKKWDATAVELEVVDE-----DPE--TGSEIIYWEMQWPKPFANRDYVY--VRRYII 118 (207)
T ss_pred EEEEcCCCHHHHHHHHhC--HHHHHHHHhhheeEEEEEc-----cCC--CCCEEEEEEEECCCCCCCccEEE--EEEEEE
Confidence 3567 8999999999986 444333332222211 111 101 01122222233224455544322 233333
Q ss_pred cCCCCeEEEEEeeee-CCCCCCC----eEEEEEEEEEEeec---CCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHH
Q 009741 419 SPDKKIFVFETVQQA-HDVPFGS----YFEIHGRWHLETIA---ENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK 490 (527)
Q Consensus 419 ~~~~~~~vi~~~~~~-~dvPygd----~F~v~~r~~i~~~~---~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~ 490 (527)
..++..++|...... +.+|-.. -....+.|+|++.. +++|++... +..+-. ..+=.+++..-+....-
T Consensus 119 ~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~---~~~dPg-G~IP~~lvN~~~~~~~~ 194 (207)
T cd08911 119 DEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLT---YFDNPG-VNIPSYITSWVAMSGMP 194 (207)
T ss_pred cCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEE---EEeCCC-CccCHHHHHHHHHhhcc
Confidence 334445555544433 3777554 34467899999884 567887766 554322 22233344444444444
Q ss_pred HHHHHHHHHH
Q 009741 491 KEVELMLETA 500 (527)
Q Consensus 491 ~~~~~~~~~~ 500 (527)
+.++.+-+.+
T Consensus 195 ~~l~~l~~a~ 204 (207)
T cd08911 195 DFLERLRNAA 204 (207)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 192
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=61.27 E-value=1.6e+02 Score=28.54 Aligned_cols=113 Identities=11% Similarity=-0.042 Sum_probs=59.7
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHH-HcCCcceEeccceecCCCCCeEEEEEEE-EecCCCCCCcceeEeEEEEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRA-ARKDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHA 416 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~-~~~~~~~~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~ 416 (527)
-.+.++++|++.+|++|.. .....+.-. .....-+..-. + ..+.+.++ .|...|+-|+.-- .....
T Consensus 84 K~e~~vd~s~e~v~~lL~D--~~~r~~Wd~~~~e~~vIe~id-----~---~~~vY~v~~~p~~~pvs~RDfV--~~~s~ 151 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSD--LRRRPEWDKHYRSCELVQQVD-----E---DDAIYHVTSPSLSGHGKPQDFV--ILASR 151 (240)
T ss_pred EEEEEEcCCHHHHHHHHhC--hhhhhhhHhhccEEEEEEecC-----C---CcEEEEEecCCCCCCCCCCeEE--EEEEE
Confidence 3457889999999999943 333222222 22222222211 1 11322222 2322344554322 22222
Q ss_pred -EEcCCC-CeEEEEEeeeeCCCCCCC----eEEEEEEEEEEeecCCceEEEEE
Q 009741 417 -VLSPDK-KIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIK 463 (527)
Q Consensus 417 -~~~~~~-~~~vi~~~~~~~dvPygd----~F~v~~r~~i~~~~~~~~~l~v~ 463 (527)
....++ .++++-..+..+++|--. .+...+.|+|++.++++|+|...
T Consensus 152 ~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~ 204 (240)
T cd08913 152 RKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYY 204 (240)
T ss_pred EeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEE
Confidence 222233 344555666667888444 45688999999999999998544
No 193
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=61.24 E-value=34 Score=31.61 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=39.3
Q ss_pred EEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC------CceeEEEEEEccc
Q 009741 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK------STVLGSVIVTVES 101 (527)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~~~------d~~iG~~~i~l~~ 101 (527)
...|.+..++.+|.|++++.+.+.. ....|.|++++..--.+ ...+|-+.++|-.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4578888899999999999998753 24559999999543211 2457777776654
No 194
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=59.84 E-value=47 Score=33.78 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=57.8
Q ss_pred ceeEEeecceEEEEeccCCceeEEEEecccceeeeecccc-cc---cCcEEEEEecCCCCCCCCCCCCCCCceeEEEeee
Q 009741 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHA-FI---NPAITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (527)
Q Consensus 192 ~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~-~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf 267 (527)
.|+|++|+-.+.|+|..- ....+.|-+.-|..|+-.... .+ ..++.|.++-+ ..+..|.|+..
T Consensus 42 ~G~l~vTNLR~iW~s~~~-~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~------------~~rfEFiFt~~ 108 (339)
T PF07289_consen 42 RGRLVVTNLRLIWHSLKR-PRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN------------NTRFEFIFTNL 108 (339)
T ss_pred eeEEEEEeeeeEEeccCC-CceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC------------CceEEEEeccC
Confidence 499999999999999753 357888888888888765432 12 23888887643 34567788866
Q ss_pred echH---HHHHHHHHHHHhhc
Q 009741 268 WNRN---HALRQLQRTAKNYH 285 (527)
Q Consensus 268 ~~r~---~~~~~l~~~~~~~~ 285 (527)
.... ..|..+..+|+.+.
T Consensus 109 ~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 109 SPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred CCCCccchHHHHHHHHHHHHH
Confidence 4333 45889999998753
No 195
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=58.95 E-value=26 Score=32.21 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=37.6
Q ss_pred eeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-----CCCceeEEEEEEccc
Q 009741 50 SSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-----WKSTVLGSVIVTVES 101 (527)
Q Consensus 50 T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~-----~~d~~iG~~~i~l~~ 101 (527)
+.++....+|.|++++.+.+.. +...|.|++++...- .....+|-+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4444444899999999998743 245599999996632 235678888888876
No 196
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=58.51 E-value=1.6e+02 Score=27.67 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=70.1
Q ss_pred eeeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEec--CCCCCCcceeEeEEEEE
Q 009741 339 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLC--KSPIYPRDTAMTESQHA 416 (527)
Q Consensus 339 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~--~~~~gpk~~~~~~~Q~~ 416 (527)
-.+.+++++++++|.+++.....+-.+....+....+. +..++ .+..+.+..|- ...+.|+.-- ..+..
T Consensus 49 k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vl----e~id~---~~~i~~~~~p~~~~~~vs~RDfV--~~~~~ 119 (208)
T cd08903 49 KGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVV----EAISD---DVSVCRTVTPSAAMKIISPRDFV--DVVLV 119 (208)
T ss_pred EEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEE----EEecC---CEEEEEEecchhcCCCcCCCceE--EEEEE
Confidence 47789999999999999753222211211111111110 11111 12212222331 1225555422 22333
Q ss_pred EEcCCCCeEEEEEeeeeC-CCC-CCCeEEEEE---EEEEEee--cCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHH
Q 009741 417 VLSPDKKIFVFETVQQAH-DVP-FGSYFEIHG---RWHLETI--AENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKY 489 (527)
Q Consensus 417 ~~~~~~~~~vi~~~~~~~-dvP-ygd~F~v~~---r~~i~~~--~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~ 489 (527)
....+ .+|++....... ..| -.++-+++. -|.+... ++++|.+... +.+++.++ +-+++|.+...+..
T Consensus 120 ~~~~d-~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~---~~~DpkG~-iP~~lvn~~~~~~~ 194 (208)
T cd08903 120 KRYED-GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSF---FQTDLSGY-LPQTVVDSFFPASM 194 (208)
T ss_pred EecCC-ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EEeccCCC-cCHHHHHHHhhHHH
Confidence 44433 355554433322 333 356666643 3455555 5678999999 88888543 23555555444444
Q ss_pred HHHHHHHHHH
Q 009741 490 KKEVELMLET 499 (527)
Q Consensus 490 ~~~~~~~~~~ 499 (527)
...+..+-+.
T Consensus 195 ~~~~~~Lr~~ 204 (208)
T cd08903 195 AEFYNNLTKA 204 (208)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 197
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=55.57 E-value=50 Score=30.72 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=38.3
Q ss_pred EEEeeeecCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC--C-------CCceeEEEEEEccc
Q 009741 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII--W-------KSTVLGSVIVTVES 101 (527)
Q Consensus 47 ~~~T~~~~~t~nP~W~e~f~f~v~~---~~~~L~~~V~d~d~~--~-------~d~~iG~~~i~l~~ 101 (527)
...|.+..++.+|.|.|++.+.+.. ....|.|++|+..-. . ....+|-+.++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4578888889999999999998743 245599999996521 1 12446666666554
No 198
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=51.23 E-value=1.5e+02 Score=25.38 Aligned_cols=59 Identities=8% Similarity=0.156 Sum_probs=36.2
Q ss_pred CeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHHHHHHH
Q 009741 440 SYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 504 (527)
Q Consensus 440 d~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l 504 (527)
+-...+.+|.|++.++++|+|... ..+.+..... +....+..-..+.+..+++.+++.+
T Consensus 82 ~~~~~~g~w~~~~~~~~~t~Vt~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 82 PVASMSGEWRFEPLGGGGTRVTLR---HDFTLGIDSP---EAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred ChhhheeEEEEEECCCCcEEEEEE---EEEEECCCCc---hhHHHHHHHHccccHHHHHHHHHHh
Confidence 445778899999998788998888 8887765433 2222223333334445555544443
No 199
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=48.90 E-value=2.4e+02 Score=28.78 Aligned_cols=107 Identities=11% Similarity=0.235 Sum_probs=68.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeec--cEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009741 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG--EEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (527)
Q Consensus 14 g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W~--e~f~f~v~~~~~~L~~~V~d~d~~~~d~~ 91 (527)
..|.|.|.+-.++ ......|+.+..+....+|..++-+..-.-+ +...+.+..-+..|++.+|-... .+..-
T Consensus 58 F~LLVeI~EI~~i-----~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~h 131 (508)
T PTZ00447 58 FYLLVKINEIFNI-----NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVH 131 (508)
T ss_pred eeEEEEehhhhcc-----ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeE
Confidence 3455666665443 3346689999988888888666544333333 33333345456779999997765 45668
Q ss_pred eEEEEEEcccC----CCcccEEEEccCCCceEE--EEEEEee
Q 009741 92 LGSVIVTVESE----GQTGAVWYTLDSPSGQVC--LHIKTIK 127 (527)
Q Consensus 92 iG~~~i~l~~l----~~~~~~w~~L~~~~G~i~--l~l~~~~ 127 (527)
||.+.+.+.+- .-+...||-+. +.|+.. +.|++.+
T Consensus 132 IgdI~InIn~dIIdk~FPKnkWy~c~-kDGq~~cRIqLSFhK 172 (508)
T PTZ00447 132 IGQIKIDINASVISKSFPKNEWFVCF-KDGQEICKVQMSFYK 172 (508)
T ss_pred EEEEEecccHHHHhccCCccceEEEe-cCCceeeeEEEEehh
Confidence 99999999863 45677899995 466654 3444443
No 200
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=44.51 E-value=51 Score=27.70 Aligned_cols=63 Identities=8% Similarity=0.029 Sum_probs=31.6
Q ss_pred EEEEEECC-eEEEeeeecCCCCCeeccEEEEEecCC--------CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009741 38 YAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDEL--------PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (527)
Q Consensus 38 yv~v~~~~-~~~~T~~~~~t~nP~W~e~f~f~v~~~--------~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l 102 (527)
||.+.+-. +...|.++. +.+|.++-+-.+.|... ...+.++++..-. .....+|.+.+++..+
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPL 73 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhh
Confidence 34444333 334555555 78999998877776431 3459999988663 3467899999999987
No 201
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=42.98 E-value=1.4e+02 Score=30.37 Aligned_cols=102 Identities=22% Similarity=0.242 Sum_probs=70.2
Q ss_pred ccCcccceeEeEEEeeee--ccccceeEEeecceEEEEeccCCceeEEEEecccceeeeecccccccCcEEEEEecCCCC
Q 009741 170 NLLPDEFVELSYSCVIER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGG 247 (527)
Q Consensus 170 ~lp~~e~l~~~f~c~l~~--~~~~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~~~~~ 247 (527)
.|-|.|.+...+.-.|.= .+=--|.+++|+-.+.||+++ .-.-++.||+=.|.+|....+. +.+|+.|.|....
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~-ne~fNVSiPylqi~~i~ir~SK-fG~aLVieT~~~s-- 225 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADM-NESFNVSIPYLQIKSIRIRDSK-FGPALVIETSESS-- 225 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccC-CccccccchHhhheeeeeeccc-cceEEEEEEeccC--
Confidence 466888888888766554 333348899999999999976 3467889999999999988764 4678888886432
Q ss_pred CCCCCCCCCCCceeEEEeee-e-chHHHHHHHHHHHHhhc
Q 009741 248 HGVPPLGSPDGRVRYKFASF-W-NRNHALRQLQRTAKNYH 285 (527)
Q Consensus 248 ~~~~~~~~~~~~~~~~f~sf-~-~r~~~~~~l~~~~~~~~ 285 (527)
|..-+-|..= . .-+..++.|..||+.+.
T Consensus 226 ----------GgYVLGFRvDP~ErL~~l~KEi~sLh~vy~ 255 (339)
T PF07289_consen 226 ----------GGYVLGFRVDPEERLQELFKEIQSLHKVYS 255 (339)
T ss_pred ----------CcEEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333210 0 01466777778887764
No 202
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.34 E-value=2.5e+02 Score=23.90 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=60.7
Q ss_pred eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEc
Q 009741 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419 (527)
Q Consensus 340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 419 (527)
+..++++|+++||+.|-. ....++.+..|-. +.. ... .-++|...++. +. .+.+..+ ..
T Consensus 3 I~~~l~v~a~~ff~~l~~---s~~~DI~~~tgk~-~~~---------~~L-~G~~Y~K~~~~--~~-~~~v~It----~~ 61 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID---SLLYDIKQATGKK-LPV---------KQL-KGFSYQKKFKN--KR-EAKVKIT----EY 61 (120)
T ss_pred EEEEecCCHHHHHHHHHH---HHHHHHHHHcCCC-CCh---------hhc-CCcEEEEEcCC--CC-EEEEEEE----EE
Confidence 357899999999999965 4566666655542 111 111 23578877653 11 3344333 22
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEE
Q 009741 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK 463 (527)
Q Consensus 420 ~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~ 463 (527)
..+..|.+...+. ......+|.|...+.++|+|...
T Consensus 62 ~~~~~Y~~~~~s~--------~~~~~i~Y~i~~~~~~~~~v~y~ 97 (120)
T PF11687_consen 62 EPNKRYAATFSSS--------RGTFTISYEIEPLDDGSIEVTYE 97 (120)
T ss_pred cCCCEEEEEEEec--------CCCEEEEEEEEECCCCcEEEEEE
Confidence 3346888877764 22367899999999999998887
No 203
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=37.76 E-value=1.9e+02 Score=22.30 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=35.7
Q ss_pred ecceEEEEeccCCceeEEEEecccceeeeeccccccc-----CcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHH
Q 009741 198 SAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN-----PAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNH 272 (527)
Q Consensus 198 s~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r~~ 272 (527)
..++|.-++- +-.+ .||+++|.+|++.++.+.. ..|+|... .......|=.++++
T Consensus 6 ~~~~L~I~~G---~~~~-~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~----------------~~~~i~IsP~~~~~ 65 (74)
T PF06713_consen 6 EDDYLIIKCG---FFKK-KIPIEDIRSIRPTKNPLSSPALSLDRLEIYYG----------------KYKSILISPKDKEE 65 (74)
T ss_pred eCCEEEEEEC---Cccc-EEEhHHccEEEecCCccccccccccEEEEEEC----------------CCCEEEEECCCHHH
Confidence 3445555543 2222 2999999999999755433 36677653 12335555555555
Q ss_pred HHHHHHH
Q 009741 273 ALRQLQR 279 (527)
Q Consensus 273 ~~~~l~~ 279 (527)
-.+.|++
T Consensus 66 FI~~L~k 72 (74)
T PF06713_consen 66 FIAELQK 72 (74)
T ss_pred HHHHHHh
Confidence 5555543
No 204
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=34.31 E-value=2.8e+02 Score=23.17 Aligned_cols=103 Identities=12% Similarity=0.152 Sum_probs=53.2
Q ss_pred eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEc
Q 009741 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419 (527)
Q Consensus 340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 419 (527)
.+.+++++++++|.++-. -.-+.++ ...+....|...+ +. .+...+... |. .. ...+.....
T Consensus 6 ~~~~v~a~~e~V~~~l~d--~~~~~~w-----~~~~~~~~~~~~~--~~-~~~~~~~~~-----g~--~~-~~~~i~~~~ 67 (139)
T PF10604_consen 6 VSIEVPAPPEAVWDLLSD--PENWPRW-----WPGVKSVELLSGG--GP-GTERTVRVA-----GR--GT-VREEITEYD 67 (139)
T ss_dssp EEEEESS-HHHHHHHHTT--TTGGGGT-----STTEEEEEEEEEC--ST-EEEEEEEEC-----SC--SE-EEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHhC--hhhhhhh-----hhceEEEEEcccc--cc-ceeEEEEec-----cc--cc-eeEEEEEec
Confidence 456899999999999864 2222221 1123322333311 12 221223321 22 12 222233333
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEE
Q 009741 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHF 471 (527)
Q Consensus 420 ~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f 471 (527)
+++..+..+.. ..| ......+|.+.+.+++ |++... ..+..
T Consensus 68 ~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~g-t~v~~~---~~~~~ 108 (139)
T PF10604_consen 68 PEPRRITWRFV----PSG---FTNGTGRWRFEPVGDG-TRVTWT---VEFEP 108 (139)
T ss_dssp TTTTEEEEEEE----SSS---SCEEEEEEEEEEETTT-EEEEEE---EEEEE
T ss_pred CCCcEEEEEEE----ecc---eeEEEEEEEEEEcCCC-EEEEEE---EEEEE
Confidence 43566666553 222 2356889999999865 888888 77766
No 205
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=34.04 E-value=49 Score=29.36 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=23.7
Q ss_pred EEEEEEEEEEeecCCceEEEEEEeeeeEEEe
Q 009741 442 FEIHGRWHLETIAENSSTIDIKVVSAGAHFK 472 (527)
Q Consensus 442 F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~ 472 (527)
=+...+|.|++.+++.|+|... ..-+|+
T Consensus 85 k~L~~~W~F~pl~~~~ckV~f~---ldfeF~ 112 (146)
T COG2867 85 KYLKGGWQFTPLSEDACKVEFF---LDFEFK 112 (146)
T ss_pred hhhcCceEEEECCCCceEEEEE---EEeeeh
Confidence 3688999999999999999988 776663
No 206
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=31.92 E-value=3.9e+02 Score=24.18 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=52.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----------CCe-EEEeeeecC-----CCCCeeccEEEEEec--CC--CcE
Q 009741 16 IKLELLAAKNLIGANLNGTSDPYAIITC----------GSE-KRFSSMVPG-----SRYPMWGEEFNFSVD--EL--PVQ 75 (527)
Q Consensus 16 L~V~vi~A~~L~~~d~~g~~dPyv~v~~----------~~~-~~~T~~~~~-----t~nP~W~e~f~f~v~--~~--~~~ 75 (527)
+.-.|..|.+.. ..+-||+-.+ +.. ...|.+... +..-.|+..|.+.+. .+ =.+
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344567777643 3456777654 122 345655532 345678888887753 22 136
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEccc
Q 009741 76 IIVTIYDWDIIWKSTVLGSVIVTVES 101 (527)
Q Consensus 76 L~~~V~d~d~~~~d~~iG~~~i~l~~ 101 (527)
|.|+||..|..+++...|...+.|-.
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeCC
Confidence 99999999999999999887776643
No 207
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=31.22 E-value=3.1e+02 Score=22.89 Aligned_cols=135 Identities=9% Similarity=0.009 Sum_probs=66.9
Q ss_pred eeeeeecCHHHHHHHhcCCCCchHHHHHHHcCCcceEeccceecCCCCCeEEEEEEEEecCCCCCCcceeEeEEEEEEEc
Q 009741 340 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 419 (527)
Q Consensus 340 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~ 419 (527)
.+.++++|++++|.++-. ..-+.+++.. .... ...|. .|+..+. .+ .. .++... ...-++...
T Consensus 4 ~s~~I~a~~~~Vw~~l~d--~~~~~~w~~~--~~~~-~~~~~----~Gg~~~~-~~-~~----~~g~~~--~~~~~i~~~ 66 (139)
T cd07814 4 IEREFDAPPELVWRALTD--PELLAQWFGP--TTTA-EMDLR----VGGRWFF-FM-TG----PDGEEG--WVSGEVLEV 66 (139)
T ss_pred EEEEecCCHHHHHHHcCC--HHHHHhhhCc--CCce-EEccc----CCceEEE-EE-EC----CCCCEE--eccEEEEEE
Confidence 346889999999999854 3333444322 1111 11222 1333331 11 11 112221 122223222
Q ss_pred CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHH
Q 009741 420 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET 499 (527)
Q Consensus 420 ~~~~~~vi~~~~~~~dvPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~ 499 (527)
.....+.+......+ ..-+....+|.|...+ ++|+|.+. ...... ... .....+.+++.++..++.
T Consensus 67 ~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~-~~T~v~~~---~~~~~~--~~~----~~~~~~~~~~~~~~~l~~ 132 (139)
T cd07814 67 EPPRRLVFTWAFSDE----TPGPETTVTVTLEETG-GGTRLTLT---HSGFPE--EDA----EQEAREGMEEGWTGTLDR 132 (139)
T ss_pred cCCCeEEEEecccCC----CCCCceEEEEEEEECC-CCEEEEEE---EEccCh--HhH----HHHHHhCHhhHHHHHHHH
Confidence 223566665554322 2235678899999998 67888887 443221 100 223455566666666666
Q ss_pred HHHHHh
Q 009741 500 ARSYIK 505 (527)
Q Consensus 500 ~~~~l~ 505 (527)
+++++.
T Consensus 133 lk~~~E 138 (139)
T cd07814 133 LKALLE 138 (139)
T ss_pred HHHHhh
Confidence 666553
No 208
>PRK10724 hypothetical protein; Provisional
Probab=29.50 E-value=98 Score=27.87 Aligned_cols=30 Identities=17% Similarity=0.587 Sum_probs=23.8
Q ss_pred CCeEEEEEEEEEEeecCCceEEEEEEeeeeEEE
Q 009741 439 GSYFEIHGRWHLETIAENSSTIDIKVVSAGAHF 471 (527)
Q Consensus 439 gd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f 471 (527)
|.-=..++.|.|.+.++++|+|... ..++|
T Consensus 94 GpF~~l~g~W~f~p~~~~~t~V~~~---l~fef 123 (158)
T PRK10724 94 GPFKKLIGGWKFTPLSQEACRIEFH---LDFEF 123 (158)
T ss_pred CChhhccceEEEEECCCCCEEEEEE---EEEEE
Confidence 3334588999999998888998888 77765
No 209
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=29.32 E-value=27 Score=39.64 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=63.8
Q ss_pred CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeccEEEEEecCCCcEEEEEEEEcCC
Q 009741 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85 (527)
Q Consensus 11 ~~~g~L~V~vi~A~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~f~v~~~~~~L~~~V~d~d~ 85 (527)
...|.+.+.+.+|..|.. ..+.||...++ ..+..|.++.++..|.||+++++.+-. .+.+++..++.+.
T Consensus 756 l~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTEKST 829 (1112)
T ss_pred ccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhcccc
Confidence 457889999999988743 34567776542 345689999999999999999988754 3344455555442
Q ss_pred ----------CCCCceeEEEEEEcccCCCcccEEEEc
Q 009741 86 ----------IWKSTVLGSVIVTVESEGQTGAVWYTL 112 (527)
Q Consensus 86 ----------~~~d~~iG~~~i~l~~l~~~~~~w~~L 112 (527)
...+...|...+.+..-......|+.-
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d~d~~t~ 866 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDPQPHHDADWYTQ 866 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCccccccccCccC
Confidence 223445666666666554444556553
No 210
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=27.26 E-value=1.2e+02 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.648 Sum_probs=23.7
Q ss_pred EEEEEEEEEeecCCceEEEEEEeeeeEEEee
Q 009741 443 EIHGRWHLETIAENSSTIDIKVVSAGAHFKK 473 (527)
Q Consensus 443 ~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K 473 (527)
..+..|.|++.++++|++... ..+++..
T Consensus 82 ~~~g~w~~~p~~~~~T~v~~~---~~~~~~~ 109 (138)
T cd07813 82 HLEGEWRFKPLGENACKVEFD---LEFEFKS 109 (138)
T ss_pred hceeEEEEEECCCCCEEEEEE---EEEEECC
Confidence 478999999999899999888 7777754
No 211
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=27.14 E-value=3.7e+02 Score=22.43 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=18.3
Q ss_pred eEEEEEEEEEEeecCCceEEEEE
Q 009741 441 YFEIHGRWHLETIAENSSTIDIK 463 (527)
Q Consensus 441 ~F~v~~r~~i~~~~~~~~~l~v~ 463 (527)
.+....+|.|+..+.++|+|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~t~l~~~ 102 (138)
T cd08862 80 GISAVHRHEFEAKPDGGVRVTTS 102 (138)
T ss_pred CEEEEEEEEEEEcCCCcEEEEEE
Confidence 36667899999987778888777
No 212
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.69 E-value=1.4e+02 Score=25.87 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=35.1
Q ss_pred EEEEEEEEEEeecCCceEEEEEEeeeeEEEeecceeeeeeehhhHHHHHHHHHHHHHHHHHHH
Q 009741 442 FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYI 504 (527)
Q Consensus 442 F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~t~~K~~Ie~~~~~~~~~~~~~~~~~~~~~l 504 (527)
+.....|.++.. +++|+|.+. ..+....... -.++.......+.+.++..++.+++.+
T Consensus 91 ~~~~~~~~~~~~-~~gT~v~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 91 ATNDVEFTLEPV-GGGTKVTWG---MSGELPFPLK-LMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred ccceEEEEEEEc-CCceEEEEE---EEecCCchHH-HHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999 557999998 6655543221 123334444455555666665555544
No 213
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.45 E-value=1.8e+02 Score=24.92 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=22.8
Q ss_pred EEEEEEEEEeecC-CceEEEEEEeeeeEEEee
Q 009741 443 EIHGRWHLETIAE-NSSTIDIKVVSAGAHFKK 473 (527)
Q Consensus 443 ~v~~r~~i~~~~~-~~~~l~v~~~~~~V~f~K 473 (527)
..+.+|.+++.++ ++|++... ..+++..
T Consensus 88 ~~~g~w~~~~~~~~~~t~v~~~---~~~~~~~ 116 (144)
T cd08866 88 RFEGSWRLEPLADGGGTLLTYE---VEVKPDF 116 (144)
T ss_pred ceEEEEEEEECCCCCeEEEEEE---EEEEeCC
Confidence 5699999999988 78998888 7777643
No 214
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=25.09 E-value=64 Score=36.92 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCcEEEEEECCeE-EEeeeecCC-CCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEE
Q 009741 35 SDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWY 110 (527)
Q Consensus 35 ~dPyv~v~~~~~~-~~T~~~~~t-~nP~W~e~f~f~v~~~~~~L~~~V~d~d~~~~d~~iG~~~i~l~~l--~~~~~~w~ 110 (527)
.++|+.+.+.... .+|....+. .+|.|.+.|..........+.+.+-+.+..+....+|.+.+++..+ +.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 4788888775443 367666666 8899999998777666777889998877776577899999998887 46677899
Q ss_pred EccC
Q 009741 111 TLDS 114 (527)
Q Consensus 111 ~L~~ 114 (527)
++..
T Consensus 218 ~Il~ 221 (887)
T KOG1329|consen 218 PILD 221 (887)
T ss_pred eeec
Confidence 8754
No 215
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=24.05 E-value=94 Score=29.78 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=29.3
Q ss_pred cceeEEeecceEEEEeccCCceeEEEEecccceeeeec
Q 009741 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (527)
Q Consensus 191 ~~Gr~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~ 228 (527)
..||+.++++.|.|-.+ ..+..|||++|.+|...
T Consensus 26 ~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 26 VKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred EEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 36999999999999973 35779999999999985
No 216
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.48 E-value=5.1e+02 Score=21.59 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=19.7
Q ss_pred EEEEEEEEEeecCCceEEEEEEeeeeEEEe
Q 009741 443 EIHGRWHLETIAENSSTIDIKVVSAGAHFK 472 (527)
Q Consensus 443 ~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~ 472 (527)
..+..|.|++.++++|+|... ......
T Consensus 80 ~~~~~~~f~~~~~~~T~vt~~---~~~~~~ 106 (139)
T cd07817 80 PNAGSVRFRPAPGRGTRVTLT---IEYEPP 106 (139)
T ss_pred CcceEEEEEECCCCCeEEEEE---EEEECC
Confidence 456888888887778888888 555544
No 217
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=20.17 E-value=3.8e+02 Score=20.08 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=36.2
Q ss_pred EEeecceEEEEeccCCceeEEEEecccceeeeeccccc--ccC--cEEEEEe
Q 009741 195 MYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF--INP--AITIILR 242 (527)
Q Consensus 195 ~yis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~--~~~--~i~i~~~ 242 (527)
..++.+.+...+-.|+ .....+|+..|.+|+-.++-+ ..+ .|.+.+.
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~ 56 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTA 56 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEEC
Confidence 5678888888887665 778899999999999988663 233 6677664
No 218
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=20.00 E-value=2.3e+02 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=22.6
Q ss_pred eEEEEEEEEEEeecCCceEEEEEEeeeeEEEe
Q 009741 441 YFEIHGRWHLETIAENSSTIDIKVVSAGAHFK 472 (527)
Q Consensus 441 ~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~ 472 (527)
......+|.|+..+++ |+|... ....+.
T Consensus 86 ~~~m~~~W~f~~~~~g-T~V~~~---~~~~~~ 113 (146)
T cd08860 86 FAYMNIRWEYTEVPEG-TRMRWV---QDFEMK 113 (146)
T ss_pred cceeeeeEEEEECCCC-EEEEEE---EEEEEC
Confidence 6689999999999665 988888 666655
Done!