BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009742
(527 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224108111|ref|XP_002314725.1| predicted protein [Populus trichocarpa]
gi|222863765|gb|EEF00896.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/548 (72%), Positives = 431/548 (78%), Gaps = 61/548 (11%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK RK +P++D GIF+GM VFLVE GVQ+RRLQIW+QKLVQMGAT EE+LSKKVTH
Sbjct: 1 MAPK--RKKSPSIDPQGIFSGMVVFLVETGVQSRRLQIWKQKLVQMGATTEERLSKKVTH 58
Query: 61 VLAMDLEA--------------------LLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLD 100
V A++ +A V+ YQWLEDSLR GEKVSED Y + +D
Sbjct: 59 VFAINSQALLQQLDGQLLKRFKPKRDFPFFCLRVLLYQWLEDSLRSGEKVSEDQYHLLVD 118
Query: 101 PEGENIADRVLSQIQGNGNTSSDGE-SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAP 159
EGEN D+ L N NTSS E S H +KIKS DV+ F K D E LSE
Sbjct: 119 MEGENTKDKSLVLKLVNENTSSADELSPHNEKIKS---DVKKF----KSDAENKGLSEL- 170
Query: 160 NSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 219
SL Y+PPDLN++ITEIFGKLINIYRALG+D
Sbjct: 171 ------------------------------SLPYSPPDLNRSITEIFGKLINIYRALGDD 200
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
RRSFSYYKAIPV+EKLPFKIESADQVK LPGIGKSMQDHIQEIVTTGKLSKLEHFE DEK
Sbjct: 201 RRSFSYYKAIPVVEKLPFKIESADQVKDLPGIGKSMQDHIQEIVTTGKLSKLEHFETDEK 260
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
VRTISLFGEVWGIGPATA K YEKGHRTL+DLKNEDSLTHSQ+LGLKYFDDIKTRIPRHE
Sbjct: 261 VRTISLFGEVWGIGPATALKFYEKGHRTLEDLKNEDSLTHSQKLGLKYFDDIKTRIPRHE 320
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
V++ME LLQK GEE+LP V ILCGGSYRRGKASCGDLD+VI HPD KSHKGFL++YVK+L
Sbjct: 321 VQEMELLLQKTGEEILPGVDILCGGSYRRGKASCGDLDIVITHPDGKSHKGFLTRYVKRL 380
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWT 459
K+MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGL+AWT
Sbjct: 381 KDMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLVAWT 440
Query: 460 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 519
GNDVLNRRLRLLAESKGYRLDDTGLFPAT SGGK+G RA SL+FD EKEVFDFLGFPW
Sbjct: 441 GNDVLNRRLRLLAESKGYRLDDTGLFPATQASGGKRGARASASLRFDNEKEVFDFLGFPW 500
Query: 520 LEPHERNL 527
LEPHERNL
Sbjct: 501 LEPHERNL 508
>gi|296086508|emb|CBI32097.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/550 (68%), Positives = 436/550 (79%), Gaps = 26/550 (4%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + P D NG+FAGM VFLVE GVQ RRL+IW+QKLVQMGAT+ ++LSK+V+H
Sbjct: 1 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSH 60
Query: 61 VLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPE---GENI 106
V A++ +ALL+Q +V++YQWLEDSLRLGEK+SED Y +K D E G
Sbjct: 61 VFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGN 120
Query: 107 ADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSE 166
+ Q N+ DG + K++KSS E ++ ES+ + + E ++ S+
Sbjct: 121 TSEIFPQPSQLNNSREDG-APQNKRMKSSPE--KNMNEESRENKRNSTAHETSDTVQGSD 177
Query: 167 SLTNTLSTASASPDFSSHHIT---------DPSLLYNPPDLNKNITEIFGKLINIYRALG 217
T S ++ + + + T D SL Y+PPDLNKNITEIFGKLINIYRALG
Sbjct: 178 ESFRTPSPENSGSNTLAEYFTISFNQVGTLDSSLPYSPPDLNKNITEIFGKLINIYRALG 237
Query: 218 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
+DRRSFSY+KAI VIEKLPFKIESADQVK LP IGKSMQDHIQEIVTTGKLSKLEHFE D
Sbjct: 238 DDRRSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETD 297
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 337
EKVRTI+LFGEVWGIGPATA KLYEKG+RTLDDLKNEDSLT++Q+LGLKYFDDIK R+PR
Sbjct: 298 EKVRTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPR 357
Query: 338 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 397
HEV++ME LLQKAGEEVLP V I+CGGSYRRGKASCGDLD++I HPD KSH+GFL +YVK
Sbjct: 358 HEVQEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGKSHRGFLPRYVK 417
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIA 457
LK+MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP RELRHRID KVYPR+IYAFGLIA
Sbjct: 418 HLKDMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPARELRHRIDLKVYPRNIYAFGLIA 477
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
WTGNDVLNRRLR+LAESKGYRLDDTGLF AT GSGGK+G RA TSL F TE+EVF+FLGF
Sbjct: 478 WTGNDVLNRRLRILAESKGYRLDDTGLFLATQGSGGKRGSRATTSLSFRTEQEVFEFLGF 537
Query: 518 PWLEPHERNL 527
PWLEPHERNL
Sbjct: 538 PWLEPHERNL 547
>gi|359473414|ref|XP_002266446.2| PREDICTED: DNA polymerase lambda-like [Vitis vinifera]
Length = 543
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/547 (69%), Positives = 436/547 (79%), Gaps = 24/547 (4%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + P D NG+FAGM VFLVE GVQ RRL+IW+QKLVQMGAT+ ++LSK+V+H
Sbjct: 1 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSH 60
Query: 61 VLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPE---GENI 106
V A++ +ALL+Q +V++YQWLEDSLRLGEK+SED Y +K D E G
Sbjct: 61 VFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGN 120
Query: 107 ADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSE 166
+ Q N+ DG + K++KSS E ++ ES+ + + E ++ S+
Sbjct: 121 TSEIFPQPSQLNNSREDG-APQNKRMKSSPE--KNMNEESRENKRNSTAHETSDTVQGSD 177
Query: 167 ------SLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDR 220
S N+ S P+ + + D SL Y+PPDLNKNITEIFGKLINIYRALG+DR
Sbjct: 178 ESFRTPSPENSGSNTLGDPNKAVGTL-DSSLPYSPPDLNKNITEIFGKLINIYRALGDDR 236
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
RSFSY+KAI VIEKLPFKIESADQVK LP IGKSMQDHIQEIVTTGKLSKLEHFE DEKV
Sbjct: 237 RSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETDEKV 296
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
RTI+LFGEVWGIGPATA KLYEKG+RTLDDLKNEDSLT++Q+LGLKYFDDIK R+PRHEV
Sbjct: 297 RTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPRHEV 356
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
++ME LLQKAGEEVLP V I+CGGSYRRGKASCGDLD++I HPD KSH+GFL +YVK LK
Sbjct: 357 QEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGKSHRGFLPRYVKHLK 416
Query: 401 EMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTG 460
+MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP RELRHRID KVYPR+IYAFGLIAWTG
Sbjct: 417 DMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPARELRHRIDLKVYPRNIYAFGLIAWTG 476
Query: 461 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 520
NDVLNRRLR+LAESKGYRLDDTGLF AT GSGGK+G RA TSL F TE+EVF+FLGFPWL
Sbjct: 477 NDVLNRRLRILAESKGYRLDDTGLFLATQGSGGKRGSRATTSLSFRTEQEVFEFLGFPWL 536
Query: 521 EPHERNL 527
EPHERNL
Sbjct: 537 EPHERNL 543
>gi|30681747|ref|NP_172522.2| DNA polymerase lambda subunit [Arabidopsis thaliana]
gi|12053869|emb|CAC21394.1| DNA polymerase lambda [Arabidopsis thaliana]
gi|91805767|gb|ABE65612.1| DNA polymerase lambda [Arabidopsis thaliana]
gi|304440990|gb|ADM33939.1| DNA pol lambda [Arabidopsis thaliana]
gi|332190467|gb|AEE28588.1| DNA polymerase lambda subunit [Arabidopsis thaliana]
Length = 529
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/539 (67%), Positives = 428/539 (79%), Gaps = 22/539 (4%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE-KLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RRLQIW+QKLVQMGA +EE +++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRLQIWKQKLVQMGAVIEEDRVTKKVT 60
Query: 60 HVLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 108
HVLAM+LEALL + ++ YQWLEDSL GEK +EDLY +K+D E +
Sbjct: 61 HVLAMNLEALLHKFGKERLSHFTARLMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPK 120
Query: 109 RVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESL 168
+ L I G S+ +SS +K+ + S + + ES + + +P+SP S
Sbjct: 121 KSLPAISG-----SEDQSSPQKRTRYSPDAGDFKGVESHSNTQG-----SPDSPTSCSVP 170
Query: 169 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 228
+ + S + + ++ + +Y PPDLN+NITEIFGKLINIYRALGEDRRSFSYYKA
Sbjct: 171 STSASPGEGIAETPTSPQSESTSVYKPPDLNRNITEIFGKLINIYRALGEDRRSFSYYKA 230
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
IPVIEK P +IES DQ+K LPGIGK+M+DHIQEIVTTGKLSKLEHFE DEKVRTISLFGE
Sbjct: 231 IPVIEKFPTRIESVDQLKHLPGIGKAMRDHIQEIVTTGKLSKLEHFETDEKVRTISLFGE 290
Query: 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
VWG+GPATA KLYEKGHRTL+DLKNEDSLTH+Q+LGLKYFDDIKTRIPR EV++ME+LLQ
Sbjct: 291 VWGVGPATALKLYEKGHRTLEDLKNEDSLTHAQKLGLKYFDDIKTRIPRQEVQEMEQLLQ 350
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
+ GEE LP V I+CGGSYRRGKA+CGDLD+V+ HPD +SHKGFL+K+VK+LKEM FLRED
Sbjct: 351 RVGEETLPGVNIVCGGSYRRGKATCGDLDIVVTHPDGQSHKGFLTKFVKRLKEMNFLRED 410
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
LIFSTHSEEGTDSGVDTYFGLCTYPG+ELR RIDFKVYPRDIY+FGLIAWTGNDVLNRRL
Sbjct: 411 LIFSTHSEEGTDSGVDTYFGLCTYPGQELRRRIDFKVYPRDIYSFGLIAWTGNDVLNRRL 470
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
RLLAESKGYRLDDTGLFPAT+ S G +G R SLK TEK+VFDFLGFPWLEPHERNL
Sbjct: 471 RLLAESKGYRLDDTGLFPATHSSSGNRGARGTASLKLSTEKQVFDFLGFPWLEPHERNL 529
>gi|449435380|ref|XP_004135473.1| PREDICTED: DNA polymerase lambda-like [Cucumis sativus]
Length = 521
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/541 (67%), Positives = 427/541 (78%), Gaps = 34/541 (6%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + + + D +G+FAGM VFLVEKGVQ RRLQIW+QKLVQMGA++EE+LSK V+H
Sbjct: 1 MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60
Query: 61 VLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIK--LDPEGENIA 107
+ A L+ALL++ V+ YQWLEDSL GEK SEDLY +K LD +G +
Sbjct: 61 IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLDEDGRDKP 120
Query: 108 DRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+ S KK+ S + E ES GD + + L + +
Sbjct: 121 -----------------QQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSK 163
Query: 168 LT-NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYY 226
L+ T+ + DF ++I +L Y+PPD+NKNITEIFGKLINIYRALG++RRSFSYY
Sbjct: 164 LSIGQTVTSPRTSDFVGNNI---ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYY 220
Query: 227 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 286
KAIPVIEKLPF+IES DQVK LP IGKS+QDHIQEIVTTGKLSKLEHFE DEKVRTISLF
Sbjct: 221 KAIPVIEKLPFRIESIDQVKHLPAIGKSLQDHIQEIVTTGKLSKLEHFETDEKVRTISLF 280
Query: 287 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
GEVWGIGPATA +LYEKG+RTLDDL+ E+SLTH+Q+LGLKYFDDIK RIPR+EV+ ME L
Sbjct: 281 GEVWGIGPATALRLYEKGYRTLDDLQKEESLTHAQKLGLKYFDDIKQRIPRNEVQDMESL 340
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 406
L+KAGE+VLP V ILCGGS+RRGK+SCGD+D+VI HPD KSH+GFL KYVK LK+MKFLR
Sbjct: 341 LKKAGEDVLPGVDILCGGSFRRGKSSCGDMDIVITHPDGKSHRGFLPKYVKHLKDMKFLR 400
Query: 407 EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNR 466
EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRID KVYPRDIYAFGLIAWTGNDVLNR
Sbjct: 401 EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDLKVYPRDIYAFGLIAWTGNDVLNR 460
Query: 467 RLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
RLRLLAESKG+RLDDTGL+P+T GSGGK+G R +LKFDTEK+VF+FLGFPWLEPHERN
Sbjct: 461 RLRLLAESKGFRLDDTGLYPSTQGSGGKRGARGTATLKFDTEKDVFEFLGFPWLEPHERN 520
Query: 527 L 527
L
Sbjct: 521 L 521
>gi|356502249|ref|XP_003519932.1| PREDICTED: DNA polymerase lambda-like [Glycine max]
Length = 534
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/538 (66%), Positives = 421/538 (78%), Gaps = 15/538 (2%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK P D +G+F+GM VFLV KGVQ+RR QIW+++LVQMGA +EE+ SK+VTH
Sbjct: 1 MAPKKK----PESDPHGMFSGMVVFLVPKGVQSRRFQIWKERLVQMGAVIEERFSKRVTH 56
Query: 61 VLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR 109
V AM +ALLQQ V+ YQWLED L+ GE +SED+Y +KLD +GE+I ++
Sbjct: 57 VFAMHSDALLQQLDRERLSRFKGRVLLYQWLEDCLKSGEILSEDMYLLKLDSQGEHIPEK 116
Query: 110 VLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 169
L N TSSD + KK K STED + + ES D + S +SS
Sbjct: 117 SLDPGLTNQRTSSDLQQLLNKKSKLSTEDTKIVKNESHDDDGKEKAVFSSTSTISSHGEV 176
Query: 170 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 229
++LS + SL Y+PPDLNKNITEIFGKL+NIYRALG+DRRSFSY+KAI
Sbjct: 177 DSLSYGNTRQQHLDAENEASSLSYHPPDLNKNITEIFGKLVNIYRALGDDRRSFSYHKAI 236
Query: 230 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 289
VIEKLPFKIES DQ+ LP IGKSM+DH+QEI+TTGKLSKLEHFE DEKVRTISLFGEV
Sbjct: 237 AVIEKLPFKIESTDQINNLPSIGKSMKDHVQEIMTTGKLSKLEHFETDEKVRTISLFGEV 296
Query: 290 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
WGIGP+TA KLYEKGHR+LDDL+N+DSLT++Q+LGLKYFDDI RIPRHE ++ME +LQK
Sbjct: 297 WGIGPSTALKLYEKGHRSLDDLRNDDSLTNAQKLGLKYFDDIGQRIPRHEAQEMEHILQK 356
Query: 350 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
GE+VLP V+I+CGGSYRRGKA+CGD+D++I HPD KSHKGFL K+VK LK+M FLREDL
Sbjct: 357 VGEDVLPGVVIICGGSYRRGKATCGDIDIIITHPDGKSHKGFLPKFVKHLKDMNFLREDL 416
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
IFS+HSEE TDSGVDTYFG CTYPGRELRHRID KVYPRDIYAFGL+AWTGNDVLNRRLR
Sbjct: 417 IFSSHSEEATDSGVDTYFGFCTYPGRELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLR 476
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
L AESKG+RLDDTGLFPAT GSGGK+G + SLKF+TEKE+FDFL FP LEPHERNL
Sbjct: 477 LQAESKGFRLDDTGLFPATQGSGGKRGAKGSASLKFNTEKEIFDFLDFPCLEPHERNL 534
>gi|357486897|ref|XP_003613736.1| DNA polymerase beta [Medicago truncatula]
gi|355515071|gb|AES96694.1| DNA polymerase beta [Medicago truncatula]
Length = 531
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/527 (67%), Positives = 414/527 (78%), Gaps = 14/527 (2%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQ- 72
+ NG+F+GM VF V KGVQ RRLQIW+Q++VQMGA +E++ SK+VTHV A+D LL +
Sbjct: 6 EQNGMFSGMVVFFVSKGVQARRLQIWKQRMVQMGAVIEDRFSKRVTHVFAVDSHTLLHEF 65
Query: 73 ----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENI--ADRVLSQIQGNGNT 120
S++ YQWLEDSL+ GEK SEDLY +KLDP+GE I D L +G+
Sbjct: 66 DSQRLSRFKGSLLLYQWLEDSLKSGEKESEDLYVLKLDPQGEGINEIDTSLDPEPIDGSL 125
Query: 121 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 180
SS+ + KKIKSS+ED E +S D NA N+ SS L+ + P
Sbjct: 126 SSEPQQLQNKKIKSSSEDAEIVNLKSNEDRRENAPLSLANTA-SSHGEVEHLNCVDSRPQ 184
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
SL Y PPDLNK I EIFGKL+NIYRALGEDRRSFSYYKAI VIEKLPFKIE
Sbjct: 185 HLDSENAASSLPYCPPDLNKKIIEIFGKLVNIYRALGEDRRSFSYYKAISVIEKLPFKIE 244
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
SADQ+K LP IGKSM+DHIQEI+TTGKLSKLEHFE DEKV+TISLFGEVWGIGPATA KL
Sbjct: 245 SADQIKNLPSIGKSMEDHIQEIITTGKLSKLEHFETDEKVQTISLFGEVWGIGPATALKL 304
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
YEKGHRTLDDL+N+DSLT++Q+LGLKYFDDI+ RIPRHEV++ME++LQK G VLP V I
Sbjct: 305 YEKGHRTLDDLRNDDSLTNAQKLGLKYFDDIRHRIPRHEVQEMEQILQKVGGNVLPGVTI 364
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD 420
+CGGSYRRGKA+CGD+D+++ HPD SHKGFL K+VK+LK+M FLREDLI+STHSEEGTD
Sbjct: 365 ICGGSYRRGKATCGDIDIIVTHPDGTSHKGFLPKFVKRLKDMSFLREDLIYSTHSEEGTD 424
Query: 421 SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 480
SGVDTYFG CTYPGRELRHRID KVYPR+IYAFGL+AWTGNDVLNRRLR AESKG+RLD
Sbjct: 425 SGVDTYFGFCTYPGRELRHRIDLKVYPREIYAFGLVAWTGNDVLNRRLRQQAESKGFRLD 484
Query: 481 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
DTGLFPA GSGGK+G + ++K TEKEVF+FLGFPWLEPHERNL
Sbjct: 485 DTGLFPAIQGSGGKRGTKGTANMKLYTEKEVFEFLGFPWLEPHERNL 531
>gi|297843866|ref|XP_002889814.1| DNA polymerase lambda [Arabidopsis lyrata subsp. lyrata]
gi|297335656|gb|EFH66073.1| DNA polymerase lambda [Arabidopsis lyrata subsp. lyrata]
Length = 529
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/543 (67%), Positives = 422/543 (77%), Gaps = 30/543 (5%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVE-EKLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RR QIW+QKLVQMGA +E ++++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRFQIWKQKLVQMGAVIEKDRVTKKVT 60
Query: 60 HVLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 108
HVLAM+L+ALL + ++ YQWLEDSL GEK +EDLY + +D E +
Sbjct: 61 HVLAMNLDALLDKFGKERLSHFRGRLMLYQWLEDSLTAGEKANEDLYALNIDSEEVEEPN 120
Query: 109 RVLSQIQGNGNTSSDGESSH-RKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMS 164
+ L I G S D S H R + D + +++S T ++P S P +
Sbjct: 121 KSLPAISG----SEDLPSPHKRTRYLPDAADFKGVESQSN----TQGSLDSPTSCSVPST 172
Query: 165 SESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFS 224
S S + ++ SP S + Y PPDLN+NITEIFGKLINIYRALGEDRRSFS
Sbjct: 173 SASPGDGIAETPTSPQSESTSV------YKPPDLNRNITEIFGKLINIYRALGEDRRSFS 226
Query: 225 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 284
YYKAIPVIEK P KIES DQ+K LPGIGKSM+DHIQEIVTTGKLSKLEHFE DEKVRTIS
Sbjct: 227 YYKAIPVIEKFPTKIESIDQLKHLPGIGKSMRDHIQEIVTTGKLSKLEHFETDEKVRTIS 286
Query: 285 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME 344
LFGEVWGIGPATA KLY+KGHRTL+DLKNEDSLTH+QRLGLKYFDDI+TRI RHEV++ME
Sbjct: 287 LFGEVWGIGPATALKLYDKGHRTLEDLKNEDSLTHAQRLGLKYFDDIRTRILRHEVQEME 346
Query: 345 RLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 404
+LLQ+ GEE LP V I+CGGSYRRGKA+CGDLD+VI HPD +SHKGFL+K+VK+LKE+ F
Sbjct: 347 QLLQRVGEETLPGVNIVCGGSYRRGKATCGDLDIVITHPDGQSHKGFLTKFVKRLKEINF 406
Query: 405 LREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
LREDLIFSTHSEEGTDSGVDTYFGLCTYPG+ELR RIDFKVYPRDIYAFGLIAWTGNDVL
Sbjct: 407 LREDLIFSTHSEEGTDSGVDTYFGLCTYPGQELRRRIDFKVYPRDIYAFGLIAWTGNDVL 466
Query: 465 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
NRRLRLLAESKGYRLDDTGLFPAT+ S G +G R SLK TEK+VFDFLGFPWLEP E
Sbjct: 467 NRRLRLLAESKGYRLDDTGLFPATHSSSGNRGARGTASLKLSTEKQVFDFLGFPWLEPQE 526
Query: 525 RNL 527
RNL
Sbjct: 527 RNL 529
>gi|357124685|ref|XP_003564028.1| PREDICTED: DNA polymerase lambda-like [Brachypodium distachyon]
Length = 552
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 326/562 (58%), Positives = 404/562 (71%), Gaps = 45/562 (8%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--- 57
MAPK + PA D GIF G+ F V VQ+ RL++W+QKLVQMG V+EK++
Sbjct: 1 MAPKRRKPARPASDPEGIFGGVSAFFVPHSVQSHRLEVWKQKLVQMGGRVQEKVANAKGV 60
Query: 58 -VTHVLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGEN 105
V HVLA D +ALL++ SV+ ++W+E+ L+ GE++ E + I + E +
Sbjct: 61 TVNHVLAADAKALLRELDAAWLHRFRGSVVSFEWMEECLKSGERLPEHKFTINYEEEFKP 120
Query: 106 IADRVLSQIQGNGNTSSDGESSHRKKIKSSTED-----------------VEHFQAESKG 148
+ G G+T G S K+ K S+ED V Q S
Sbjct: 121 ------KKAAGTGHT---GASRPPKRSKMSSEDHGKRKETIVQDGEKELAVGEHQDASTH 171
Query: 149 DVETNALSEAPNSPMSSESLT-NTLSTASASPDFSSHHIT--DPSLLYNPPDLNKNITEI 205
E + + + + + S+S + +T+ T + F + +P+ Y PPDLN+NITE+
Sbjct: 172 AREGSGVDKGRSQYVCSQSSSGDTMDTIGSHGTFDIEEASSVEPTT-YAPPDLNRNITEV 230
Query: 206 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 265
FGKLINIYRALG+ RRSFSYYKAIPVIEKLPFK+ESADQVK LP IGKS++DHI EIVTT
Sbjct: 231 FGKLINIYRALGDGRRSFSYYKAIPVIEKLPFKVESADQVKDLPAIGKSLKDHINEIVTT 290
Query: 266 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 325
GKLSKLEHFE DEK RT+SLFGEVWG+GPATA KLY+KGHRTL+DL+ +DSLT++QR GL
Sbjct: 291 GKLSKLEHFENDEKARTVSLFGEVWGVGPATALKLYDKGHRTLEDLRKDDSLTYAQRTGL 350
Query: 326 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 385
K+FDDIK RIPRHEV +ME+LLQ G+++LP V I+CGGSYRRGKASCGD+D+VI HPD
Sbjct: 351 KFFDDIKQRIPRHEVSEMEKLLQDVGKDILPGVTIVCGGSYRRGKASCGDMDIVITHPDG 410
Query: 386 KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKV 445
+SH GFL K+V++LK++ FLREDLIFS HS EGTD GVDTYFGLCTYPGRELRHRID KV
Sbjct: 411 ESHVGFLPKFVQRLKDISFLREDLIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKV 470
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 505
YPR+ YAFGL+AWTGNDVLNRRLR+LA+SKGY LDDTGL+ AT SGGK+ R+ +
Sbjct: 471 YPRNRYAFGLLAWTGNDVLNRRLRILADSKGYALDDTGLYLATLSSGGKRMGRSEAIVNC 530
Query: 506 DTEKEVFDFLGFPWLEPHERNL 527
DTEK+VFD LGFPWLEPHERNL
Sbjct: 531 DTEKDVFDTLGFPWLEPHERNL 552
>gi|47232548|dbj|BAD18976.1| DNA polymerase lambda [Oryza sativa Japonica Group]
Length = 552
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/539 (60%), Positives = 404/539 (74%), Gaps = 29/539 (5%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 19 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 78
Query: 68 ALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRV 110
ALL++ SV+ ++WLE+ L+ GE++ E + I K EG V
Sbjct: 79 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 138
Query: 111 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 169
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 139 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 193
Query: 170 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 228
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 194 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 253
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 254 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 313
Query: 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 314 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 373
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK++ FLRED
Sbjct: 374 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKDINFLRED 433
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
LIFS HS EGTD GVDTYFGLCTYPGRELRHRID KVYPR+ +AFGL+AWTGNDVLNRRL
Sbjct: 434 LIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRL 493
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
R+LA+SKGY LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 494 RILADSKGYILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 552
>gi|115467296|ref|NP_001057247.1| Os06g0237200 [Oryza sativa Japonica Group]
gi|113595287|dbj|BAF19161.1| Os06g0237200, partial [Oryza sativa Japonica Group]
Length = 539
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 325/539 (60%), Positives = 403/539 (74%), Gaps = 29/539 (5%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 6 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 65
Query: 68 ALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRV 110
ALL++ SV+ ++WLE+ L+ GE++ E + I K EG V
Sbjct: 66 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 125
Query: 111 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 169
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 126 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 180
Query: 170 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 228
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 181 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 240
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 241 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 300
Query: 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 301 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 360
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK + FLRED
Sbjct: 361 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKGINFLRED 420
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
LIFS HS EGTD GVDTYFGLCTYPGRELRHRID KVYPR+ +AFGL+AWTGNDVLNRRL
Sbjct: 421 LIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRL 480
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
R+LA+SKGY LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 481 RILADSKGYILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 539
>gi|51535806|dbj|BAD37891.1| DNA polymerase lambda [Oryza sativa Japonica Group]
Length = 549
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 325/539 (60%), Positives = 403/539 (74%), Gaps = 29/539 (5%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 16 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 75
Query: 68 ALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRV 110
ALL++ SV+ ++WLE+ L+ GE++ E + I K EG V
Sbjct: 76 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 135
Query: 111 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 169
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 136 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 190
Query: 170 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 228
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 191 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 250
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 251 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 310
Query: 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 311 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 370
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK + FLRED
Sbjct: 371 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKGINFLRED 430
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
LIFS HS EGTD GVDTYFGLCTYPGRELRHRID KVYPR+ +AFGL+AWTGNDVLNRRL
Sbjct: 431 LIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRL 490
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
R+LA+SKGY LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 491 RILADSKGYILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 549
>gi|326523649|dbj|BAJ92995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 548
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 323/560 (57%), Positives = 398/560 (71%), Gaps = 45/560 (8%)
Query: 1 MAPKTTRKPT-PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---- 55
MAPK RKP P D GIF G+ F V GVQ+RRL++W+QKLVQMG +E+K +
Sbjct: 1 MAPK--RKPAEPPRDPEGIFRGVSAFFVPHGVQSRRLEVWKQKLVQMGGRLEKKDADAKG 58
Query: 56 KKVTHVLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGE 104
++ HVLA D +ALL++ SV+ + WLE+ L+ GE++ E + I + E +
Sbjct: 59 ARINHVLAADAKALLRELGADWLHRFTGSVVSFDWLEECLKSGERLPEHKFAINYEEEFK 118
Query: 105 NIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQA------------ESKGDVET 152
+ G G TS S K+ K S++D E+ + D T
Sbjct: 119 P------KKAAGAGGTSVSNPS---KRSKISSQDPENRKGTGGQGVKEEVPTREHRDAST 169
Query: 153 NA-----LSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFG 207
+A + + P S++ + S D +P+ Y PPDLN+NITEIFG
Sbjct: 170 HAHHGSGVEKGPGQFAHSQTSSGDTKDTVGSLDVEEASSGEPTT-YAPPDLNRNITEIFG 228
Query: 208 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 267
KLINIYRA+G+DRRSFSYYKAIPVIEKLPFKIES DQVK LP IGKS++DHI EI TTGK
Sbjct: 229 KLINIYRAMGDDRRSFSYYKAIPVIEKLPFKIESGDQVKNLPAIGKSLKDHINEIATTGK 288
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 327
LSKLEHFE DEKVR +SLFGEVWG+GPATA KLY+KGHRTLDDL+ +DSLT++QR GLK+
Sbjct: 289 LSKLEHFENDEKVRAVSLFGEVWGVGPATALKLYDKGHRTLDDLRKDDSLTYAQRTGLKF 348
Query: 328 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 387
FDDI+ RIPRHEV +ME+LLQ+ G+++LP V I+CGGSYRRGK+SCGD+D+VI H D KS
Sbjct: 349 FDDIRQRIPRHEVSEMEKLLQEVGKDILPGVTIVCGGSYRRGKSSCGDMDIVITHDDGKS 408
Query: 388 HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYP 447
H GFL K+V++LK++ FLREDLIFS +S EGTDSGVDTYFGLCTYPGRELRHRID KVYP
Sbjct: 409 HVGFLPKFVQRLKDINFLREDLIFSINSIEGTDSGVDTYFGLCTYPGRELRHRIDLKVYP 468
Query: 448 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 507
R+ YA GL+AWTGNDVLNRRLR+LAESKGY LDDTGL+ AT SGGK+ R+ +
Sbjct: 469 RNRYASGLLAWTGNDVLNRRLRILAESKGYVLDDTGLYLATQSSGGKRAGRSEAIVNCHE 528
Query: 508 EKEVFDFLGFPWLEPHERNL 527
EK+VFD LGFP+LEPHERNL
Sbjct: 529 EKDVFDTLGFPYLEPHERNL 548
>gi|413952550|gb|AFW85199.1| hypothetical protein ZEAMMB73_545880 [Zea mays]
Length = 552
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 327/552 (59%), Positives = 395/552 (71%), Gaps = 51/552 (9%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEAL 69
D +GIF G+ F+V GVQ RRL +W+Q+LVQMG V EK +K V HVLAMD +AL
Sbjct: 14 DPDGIFRGVSAFIVPNGVQARRLVVWKQRLVQMGGRVVEKPTKGELAGVNHVLAMDAKAL 73
Query: 70 LQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG 118
L++ SV+ ++W+E+ L+ GE++ ++ ++ E E + G
Sbjct: 74 LRELDAAWLHRFRGSVVSFEWIEECLKSGERLP--IHNFAINYEKEFKPKNAVC----TG 127
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS 178
N + S K+ K S+E Q S GD E + P P +S + S+A
Sbjct: 128 NLVA---SRPSKRTKMSSEYPGDHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQ 181
Query: 179 PD---------------FSSHHI--------TDPSLLYNPPDLNKNITEIFGKLINIYRA 215
P+ SH PS+ Y P DLNKNIT+IFG+LI+IYRA
Sbjct: 182 PNQYASSQSSSADSKDTIGSHGTFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRA 240
Query: 216 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 275
LG+DRRSFSYYKAIPVIEKLPFKIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE
Sbjct: 241 LGDDRRSFSYYKAIPVIEKLPFKIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFE 300
Query: 276 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 335
DEKVRTISLFGEVWG+GPATA KLYEKGHRTLDDL+ ++SLT++QR+GLK+FDDIK RI
Sbjct: 301 NDEKVRTISLFGEVWGVGPATALKLYEKGHRTLDDLQRDESLTNAQRIGLKFFDDIKQRI 360
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
PRH+V +ME+LLQ G ++LP V I+CGGSYRRGKASCGD+D++I HPD +SH GFLSK+
Sbjct: 361 PRHDVSEMEKLLQDVGTDILPGVTIVCGGSYRRGKASCGDMDIIITHPDGESHVGFLSKF 420
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGL 455
V++LKE+ FLREDLIFS HS +GTDSGVDTYFGLCTYPGRELRHRID KVYPR+ YA GL
Sbjct: 421 VQRLKEINFLREDLIFSIHSVDGTDSGVDTYFGLCTYPGRELRHRIDLKVYPRNRYACGL 480
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+AWTGNDVLNRR RLLAESKGY LDDTGL+ AT GSGGK R+ + TEK+VF+ L
Sbjct: 481 LAWTGNDVLNRRFRLLAESKGYVLDDTGLYLATRGSGGKHAGRSDAIVNCHTEKDVFETL 540
Query: 516 GFPWLEPHERNL 527
GFPWLEPHERNL
Sbjct: 541 GFPWLEPHERNL 552
>gi|222635274|gb|EEE65406.1| hypothetical protein OsJ_20743 [Oryza sativa Japonica Group]
Length = 578
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 326/568 (57%), Positives = 403/568 (70%), Gaps = 58/568 (10%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRL-----------------------------QIWRQKL 43
LD +G+F G+ F+V VQ+RRL Q+W+Q+L
Sbjct: 16 LDPDGMFRGVSAFVVPHAVQSRRLEVAAPPSNPSQPPPTLSPVLRVSWLSSSVQVWKQRL 75
Query: 44 VQMGATVEEKLSKK-----VTHVLAMDLEALLQQ-----------SVIRYQWLEDSLRLG 87
QMG V+EKL+ K VTHVLA D +ALL++ SV+ ++WLE+ L+ G
Sbjct: 76 AQMGGRVQEKLAAKGGGGAVTHVLAADAKALLRELDAAWLHRFRGSVVSFEWLEECLKSG 135
Query: 88 EKVSEDLYRI------KLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEH 141
E++ E + I K EG VL Q SSDG + ++ + E +
Sbjct: 136 ERLPEHKFAINYEEEFKPKKEGGAAGSGVL-QSAKRSKISSDGPENRKETAGGNRESRDA 194
Query: 142 FQAESKGDVETNALSEAPNSPMSSESLT-NTLSTASASPDFSSHHITD-PSLLYNPPDLN 199
+ E + + + P++ SS+S + ++ T ++ F + + S Y PPDLN
Sbjct: 195 IAHPN----EDSDVVKGPSTCTSSQSASGDSKETIASQNAFKAEEASSGESSTYAPPDLN 250
Query: 200 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 259
+NITEIFGKLINIYRALG+DRRSFSYYKAIPVIEKLPFKIESADQVK LP IGKS++DHI
Sbjct: 251 RNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKDLPAIGKSLKDHI 310
Query: 260 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH 319
EIV TGKLSKLEHFE DEKVRT+SLFGEVWG+GPATA KLY+KGHRTLDDL+ +DSLT
Sbjct: 311 NEIVNTGKLSKLEHFENDEKVRTVSLFGEVWGVGPATALKLYDKGHRTLDDLQKDDSLTS 370
Query: 320 SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 379
+QR+GLK+FDDIK RIPRHEV +ME+LLQ+ G ++LP VII+CGGSYRRGK+SCGD+D++
Sbjct: 371 AQRIGLKFFDDIKQRIPRHEVSEMEKLLQEVGTDILPGVIIVCGGSYRRGKSSCGDMDII 430
Query: 380 IMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH 439
I HPD +SH GFL K+V++LK + FLREDLIFS HS EGTD GVDTYFGLCTYPGRELRH
Sbjct: 431 ITHPDGESHVGFLPKFVQRLKGINFLREDLIFSIHSIEGTDCGVDTYFGLCTYPGRELRH 490
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 499
RID KVYPR+ +AFGL+AWTGNDVLNRRLR+LA+SKGY LDDTGL+ AT GSGGK+G R+
Sbjct: 491 RIDLKVYPRNRHAFGLLAWTGNDVLNRRLRILADSKGYILDDTGLYLATPGSGGKRGGRS 550
Query: 500 RTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ DTEK+VFD LGFPWLEPHERNL
Sbjct: 551 DAIINCDTEKDVFDTLGFPWLEPHERNL 578
>gi|218197869|gb|EEC80296.1| hypothetical protein OsI_22314 [Oryza sativa Indica Group]
Length = 1863
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/471 (62%), Positives = 360/471 (76%), Gaps = 19/471 (4%)
Query: 68 ALLQQSVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRVLSQIQGNGNTS 121
A +SV+ ++WLE+ L+ GE++ E + I K EG VL Q S
Sbjct: 1401 AFKAESVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGVL-QSAKRSKIS 1459
Query: 122 SDGESSHRKKI---KSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT-NTLSTASA 177
SDG S ++ + S + + H +S + + PN+ SS+S + ++ T ++
Sbjct: 1460 SDGPESRKETAGGNRESRDAIAHPNEDSD-------VVKGPNTYTSSQSASGDSKETIAS 1512
Query: 178 SPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKAIPVIEKLP
Sbjct: 1513 QNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKLP 1572
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
FKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGEVWG+GPAT
Sbjct: 1573 FKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGEVWGVGPAT 1632
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
A KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ+ G ++LP
Sbjct: 1633 ALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQEVGTDILP 1692
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK++ FLREDLIFS HS
Sbjct: 1693 GVIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKDINFLREDLIFSIHSI 1752
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
EGTD GVDTYFGLCTYPGRELRHRID KVYPR+ +AFGL+AWTGNDVLNRRLR+LA+SKG
Sbjct: 1753 EGTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRLRILADSKG 1812
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
Y LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 1813 YILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 1863
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 28/106 (26%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKK-----VTHVLAMDLE 67
D +G+F G+ F+V W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 1227 DPDGMFRGVSAFVV-----------WKQRLAQMGGRVVQEKLAAKGGGGAVTHVLAADAK 1275
Query: 68 ALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPE 102
ALL++ SV+ ++WLE+ L+ GE++ E + I + E
Sbjct: 1276 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEE 1321
>gi|297849654|ref|XP_002892708.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297338550|gb|EFH68967.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 271/325 (83%), Positives = 297/325 (91%), Gaps = 1/325 (0%)
Query: 204 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 263
EIFGKLINIYRALGEDRRSFSYYKAIP+IEK P +IES DQ+K PGIGK+M+DHIQEIV
Sbjct: 6 EIFGKLINIYRALGEDRRSFSYYKAIPIIEKFPTRIESVDQLKHFPGIGKAMRDHIQEIV 65
Query: 264 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 323
TTGKLSKLEHFE DEKVRTISLFGEVWGI PATA KLYEKGHRTL+DLKNEDSLTH+QRL
Sbjct: 66 TTGKLSKLEHFETDEKVRTISLFGEVWGISPATALKLYEKGHRTLEDLKNEDSLTHAQRL 125
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG-DLDVVIMH 382
GLKYFDDI+TRIPRHEV+++E+LLQ+ GEE LP V I+CGGSYRRGKA+C +LD+VI H
Sbjct: 126 GLKYFDDIRTRIPRHEVQEVEQLLQRVGEETLPGVNIVCGGSYRRGKATCTYNLDIVITH 185
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRID 442
PD +SHKGFL+K+VK+LKE+ FLREDLIFSTHSEEGTDSGVDTYFGLCTYPG+ELR ID
Sbjct: 186 PDGQSHKGFLTKFVKRLKEINFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGQELRRHID 245
Query: 443 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT+ S G +G R S
Sbjct: 246 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATHSSSGNRGARGTAS 305
Query: 503 LKFDTEKEVFDFLGFPWLEPHERNL 527
LK TEK+VFDFLGFPWLEPHERNL
Sbjct: 306 LKLSTEKQVFDFLGFPWLEPHERNL 330
>gi|242095276|ref|XP_002438128.1| hypothetical protein SORBIDRAFT_10g008500 [Sorghum bicolor]
gi|241916351|gb|EER89495.1| hypothetical protein SORBIDRAFT_10g008500 [Sorghum bicolor]
Length = 498
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/505 (58%), Positives = 356/505 (70%), Gaps = 49/505 (9%)
Query: 1 MAPKTTRKPTPAL--DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK- 57
MAPK RKP A D +GIF G+ F+V GVQ RRL++W+Q+LVQMG V EK K
Sbjct: 1 MAPK--RKPAVAAERDPDGIFRGVSAFIVPHGVQARRLEVWKQRLVQMGGRVVEKPPKGE 58
Query: 58 ---VTHVLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEG 103
HVLAMD +ALL++ SV+ ++W+E+ L+ GE++ + I + E
Sbjct: 59 LAGFNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWMEECLKSGERLPNHKFAINYEEE- 117
Query: 104 ENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGD-------------- 149
L G T + G K+ K S+E Q S GD
Sbjct: 118 -------LKPKNAVG-TENLGALQPAKRTKMSSEYPGDCQRVSGGDRESELAAAGSPGAS 169
Query: 150 ---VETNALSEAPNSPMSSESLTNTL-STASASPDFSSHHITD--PSLLYNPPDLNKNIT 203
VE ++ + PN SS+S + T + F + PS+ Y P DLN+NIT
Sbjct: 170 AHMVEGSSAGKQPNQYASSQSSSADSKDTVGSHGTFGIEEASSGGPSI-YAPADLNRNIT 228
Query: 204 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 263
+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPFKIESADQVKGLP IGKS++DHI EIV
Sbjct: 229 KIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKGLPTIGKSLKDHINEIV 288
Query: 264 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 323
TTGKLSKLEHFE DEKVRTISLFGEVWG+GPATA KLYEKGHRTLDDL+ ++SLT++QR+
Sbjct: 289 TTGKLSKLEHFENDEKVRTISLFGEVWGVGPATALKLYEKGHRTLDDLRKDESLTNAQRI 348
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
GLK+FDDIK RIPRHEV +ME LL+ G ++LP VII+CGGSYRRGKASCGD+D++I HP
Sbjct: 349 GLKFFDDIKQRIPRHEVSEMEELLKDVGTDILPGVIIVCGGSYRRGKASCGDMDIIITHP 408
Query: 384 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 443
D +SH GFL K+V++LKE+ FLREDLIFS HS +G+DSGVDTYFGLCTYPGRELRHRID
Sbjct: 409 DGESHVGFLPKFVQRLKEINFLREDLIFSIHSVDGSDSGVDTYFGLCTYPGRELRHRIDL 468
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRL 468
KVYPR+ YA GL+AWTGNDVLNRRL
Sbjct: 469 KVYPRNRYACGLLAWTGNDVLNRRL 493
>gi|5091544|gb|AAD39573.1|AC007067_13 T10O24.13 [Arabidopsis thaliana]
Length = 559
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 304/608 (50%), Positives = 366/608 (60%), Gaps = 130/608 (21%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE-KLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RRLQIW+QKLVQMGA +EE +++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRLQIWKQKLVQMGAVIEEDRVTKKVT 60
Query: 60 HVLAMDLEALLQ--------------------------------------------QSVI 75
HVLAM+LEALL Q ++
Sbjct: 61 HVLAMNLEALLHKFGKERLSHFTAVIFSTIRLIGYKFYLRIEIIQCYKFIYIGCSLQRLM 120
Query: 76 RYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSS 135
YQWLEDSL GEK +EDLY +K+D E + + L I G S+ +SS +K+ + S
Sbjct: 121 LYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISG-----SEDQSSPQKRTRYS 175
Query: 136 TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 195
+ + ES + + +P+SP S + + S + + ++ + +Y P
Sbjct: 176 PDAGDFKGVESHSNTQG-----SPDSPTSCSVPSTSASPGEGIAETPTSPQSESTSVYKP 230
Query: 196 PDLNKNITEIFGKLINIYRA---------------LGEDRRSFSYYKAIPVIEKLPFKIE 240
PDLN+NITEIFGKLINIYR LGEDRRSFSYYKAIPVIEK P +IE
Sbjct: 231 PDLNRNITEIFGKLINIYRGTISGVCILDYSLIVTLGEDRRSFSYYKAIPVIEKFPTRIE 290
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
S DQ+K LPGIGK+M+DHIQEIVTTGKLSKLEHFE DEKVRTISLFGEVWG+GPATA KL
Sbjct: 291 SVDQLKHLPGIGKAMRDHIQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGVGPATALKL 350
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME------RLLQKAGEEV 354
YEKGHRTL+DLKNEDSLTH+Q+LGLKYFDDIKTRIPR EV + L + +
Sbjct: 351 YEKGHRTLEDLKNEDSLTHAQKLGLKYFDDIKTRIPRQEVRFLNFNVNFVCLYYPSCNFL 410
Query: 355 LPEV-IILC-----GGSYR---------RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
L + + C YR RGKA+CGDLD+V+ HPD + + LS VK
Sbjct: 411 LIFLHFLYCRCKRWNNFYRESARKLCLARGKATCGDLDIVVTHPDGQRKE--LSGLVKDK 468
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWT 459
K+ + DS + RDIY+FGLIAWT
Sbjct: 469 KDNTMI--------------DSAMS-----------------------RDIYSFGLIAWT 491
Query: 460 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 519
GNDVLNRRLRLLAESKGYRLDDTGLFPAT+ S G +G R SLK TEK+VFDFLGFPW
Sbjct: 492 GNDVLNRRLRLLAESKGYRLDDTGLFPATHSSSGNRGARGTASLKLSTEKQVFDFLGFPW 551
Query: 520 LEPHERNL 527
LEPHERNL
Sbjct: 552 LEPHERNL 559
>gi|168048054|ref|XP_001776483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672209|gb|EDQ58750.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 535
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/524 (50%), Positives = 352/524 (67%), Gaps = 32/524 (6%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEAL--------- 69
F G+ + VE G+Q RRLQIW+QKL+Q+G VE+ S+ ++HV A +E +
Sbjct: 29 FRGIAAYFVETGIQPRRLQIWKQKLLQLGGVVEDHWSEHLSHVFAASVETVTDKCGRRKL 88
Query: 70 --LQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESS 127
+ Q+V++Y W+ED L+ G+ + D Y + + PE +++ N SS
Sbjct: 89 KNILQNVLKYTWIEDCLKAGKCLPIDSYVLDILPENRSVSRNSTENSGLRDNAPEKAVSS 148
Query: 128 HRKKIKSSTEDVEHFQ-AESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 186
+K+ SS + + Q A S+ D + +EA SS L A P+
Sbjct: 149 SLQKLTSSERGLHNTQGASSEEDCDMKNEAEA-----SSAELAPARDAAPGPPEAG---- 199
Query: 187 TDPSLLYNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQV 245
Y PP+LN +IT F ++ +IY+ ALG+DRR+FSYYKA+ V+EK+PFKI S +Q+
Sbjct: 200 ------YTPPNLNAHITGPFSEIKDIYKEALGDDRRAFSYYKALSVLEKVPFKITSVNQI 253
Query: 246 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 305
KG P IGKS+ + I EI++TG+ SKLEH + D KVR ++LFG VWGIGPATAQ+LY+KG
Sbjct: 254 KGFPTIGKSLMESIHEILSTGRFSKLEHLKNDNKVRVLALFGSVWGIGPATAQRLYDKGL 313
Query: 306 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 365
RTL++LK +++LT QR+GL + +DI T+IPRHE+++ME ++QK+G E+ P + I+CGGS
Sbjct: 314 RTLEELKTDNTLTPPQRIGLMFHNDIITKIPRHEIKEMEAIVQKSGSELCPGISIMCGGS 373
Query: 366 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFSTHSEEGTDSGVD 424
YRRGKA GD+D VI HPD SH GFL + V+KLK FL EDL I HS EGTD GVD
Sbjct: 374 YRRGKALSGDMDFVITHPDGHSHTGFLHELVRKLKSEDFLTEDLRIGIEHSTEGTDHGVD 433
Query: 425 TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
T+FGLC YPGRE+RHR+DFKVYP D Y FGLIAWTGND+LNRRLRLLAE+KGY LDD GL
Sbjct: 434 TWFGLCKYPGREMRHRVDFKVYPFDQYPFGLIAWTGNDILNRRLRLLAEAKGYSLDDHGL 493
Query: 485 FP-ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+P T +GGK V+ S+ +E EVF+ LGFPWLEPHERNL
Sbjct: 494 YPIVTDANGGK--VKLSVSVPCKSECEVFEKLGFPWLEPHERNL 535
>gi|449478716|ref|XP_004155400.1| PREDICTED: DNA polymerase lambda-like, partial [Cucumis sativus]
Length = 400
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/420 (61%), Positives = 312/420 (74%), Gaps = 34/420 (8%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + + + D +G+FAGM VFLVEKGVQ RRLQIW+QKLVQMGA++EE+LSK V+H
Sbjct: 1 MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60
Query: 61 VLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIK--LDPEGENIA 107
+ A L+ALL++ V+ YQWLEDSL GEK SEDLY +K LD +G +
Sbjct: 61 IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLDEDGRD-- 118
Query: 108 DRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+ S KK+ S + E ES GD + + L + +
Sbjct: 119 ---------------KPQQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSK 163
Query: 168 LT-NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYY 226
L+ T+ + DF ++I +L Y+PPD+NKNITEIFGKLINIYRALG++RRSFSYY
Sbjct: 164 LSIGQTVTSPRTSDFVGNNI---ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYY 220
Query: 227 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 286
KAIPVIEKLPF+IES DQVK LP IGKS+QDHIQEIVTTGKLSKLEHFE DEKVRTISLF
Sbjct: 221 KAIPVIEKLPFRIESIDQVKHLPAIGKSLQDHIQEIVTTGKLSKLEHFETDEKVRTISLF 280
Query: 287 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
GEVWGIGPATA +LYEKG+RTLDDL+ E+SLTH+Q+LGLKYFDDIK RIPR+EV+ ME L
Sbjct: 281 GEVWGIGPATALRLYEKGYRTLDDLQKEESLTHAQKLGLKYFDDIKQRIPRNEVQDMESL 340
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 406
L+KAGE+VLP V ILCGGS+RRGK+SCGD+D+VI HPD KSH+GFL KYVK LK+MKFLR
Sbjct: 341 LKKAGEDVLPGVDILCGGSFRRGKSSCGDMDIVITHPDGKSHRGFLPKYVKHLKDMKFLR 400
>gi|302763783|ref|XP_002965313.1| hypothetical protein SELMODRAFT_83116 [Selaginella moellendorffii]
gi|300167546|gb|EFJ34151.1| hypothetical protein SELMODRAFT_83116 [Selaginella moellendorffii]
Length = 340
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/343 (59%), Positives = 259/343 (75%), Gaps = 11/343 (3%)
Query: 193 YNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 251
Y PP+LN+NIT FG+L +IY+ LG++RRS+SY+KAI +EKLP+++ S DQVK P I
Sbjct: 1 YAPPNLNQNITGPFGELRDIYKNGLGDNRRSYSYHKAISYLEKLPYQVTSVDQVKNAPSI 60
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
GKS+Q+HIQEI++TGKLSKLEHF DEKV+T+SLFG VWGIGP+ A K YEKGHR+L+DL
Sbjct: 61 GKSLQNHIQEILSTGKLSKLEHFRDDEKVKTVSLFGSVWGIGPSNALKYYEKGHRSLEDL 120
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII--LCGGSYRRG 369
++++SLT +QRLGL+YF+DI +IPR E +E L+Q+ + P V I +CGGSYRRG
Sbjct: 121 RHDESLTRTQRLGLQYFEDINAKIPRSEANYVENLVQEIASAIQPGVYISVVCGGSYRRG 180
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
K+ GD+D+++ H D SHKGFL + V++LK++ FL EDL+ H EE D VDTYFGL
Sbjct: 181 KSLVGDMDMIVTHSDGTSHKGFLRRLVQRLKDIDFLTEDLLIGYH-EELNDDAVDTYFGL 239
Query: 430 CTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT- 488
C YPGRE RHRIDFKVY + Y FGLIAWTGNDVLNRRLR+LA KGY+LDDTGL+
Sbjct: 240 CKYPGREQRHRIDFKVYSWEQYPFGLIAWTGNDVLNRRLRILANEKGYKLDDTGLYRTIL 299
Query: 489 YGSGGKQGVR----ARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
Y + V AR K EKEVF+F+G PWLEP+ERNL
Sbjct: 300 YEKHKRHKVSKLKGARVICK--NEKEVFEFVGHPWLEPNERNL 340
>gi|302790790|ref|XP_002977162.1| hypothetical protein SELMODRAFT_106459 [Selaginella moellendorffii]
gi|300155138|gb|EFJ21771.1| hypothetical protein SELMODRAFT_106459 [Selaginella moellendorffii]
Length = 338
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/341 (58%), Positives = 258/341 (75%), Gaps = 9/341 (2%)
Query: 193 YNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 251
Y PP+LN+NIT FG+L +IY+ LG++RRS+SY+KAI +EKLP+++ S QVK P I
Sbjct: 1 YAPPNLNQNITGPFGELRDIYKNGLGDNRRSYSYHKAISYLEKLPYQVTSVYQVKNAPSI 60
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
GKS+Q+HIQEI++TGKLSKLEHF DEKV+T+SLFG VWGIGP+ A K YEKGHR+L+DL
Sbjct: 61 GKSLQNHIQEILSTGKLSKLEHFRDDEKVKTVSLFGSVWGIGPSNALKYYEKGHRSLEDL 120
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
++++SLT +QRLGL+YF+DI +IPR E +E L+Q+ + P + ++CGGSYRRGK+
Sbjct: 121 RHDESLTRTQRLGLQYFEDINAKIPRSEANYVENLVQEIASAIQPGISVVCGGSYRRGKS 180
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
GD+D+++ H D SHKGFL + +++LK++ FL EDL+ H EE D VDTYFGLC
Sbjct: 181 LVGDMDMIVTHSDGTSHKGFLRRLIQRLKDIDFLTEDLLIGYH-EELNDDAVDTYFGLCK 239
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT-YG 490
YPGRE RHRIDFKVY + Y FGLIAWTGNDVLNRRLR+LA KGY+LDDTGL+ Y
Sbjct: 240 YPGREQRHRIDFKVYSWEQYPFGLIAWTGNDVLNRRLRILANEKGYKLDDTGLYRTILYE 299
Query: 491 SGGKQGVR----ARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ V AR K EKEVF+F+G PWLEP+ERNL
Sbjct: 300 KHKRHKVSKLKGARVICK--NEKEVFEFVGHPWLEPNERNL 338
>gi|255558390|ref|XP_002520222.1| DNA polymerase lambda, putative [Ricinus communis]
gi|223540714|gb|EEF42277.1| DNA polymerase lambda, putative [Ricinus communis]
Length = 314
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/296 (61%), Positives = 216/296 (72%), Gaps = 21/296 (7%)
Query: 1 MAPKTTRK-PTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVT 59
MAPK T K TP+ D NG+F+GM VFLVE GVQ+RRLQIW+QKLVQMGAT+E +LSKKVT
Sbjct: 23 MAPKATAKNKTPSRDPNGMFSGMVVFLVENGVQSRRLQIWKQKLVQMGATIETRLSKKVT 82
Query: 60 HVLAMDLEALLQQ-----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 108
HVLAM+ ALLQQ V+ YQWLEDSLRLG+KVSE+ Y +++D E ++
Sbjct: 83 HVLAMNSNALLQQLDKERLQRLKVKVLVYQWLEDSLRLGKKVSEETYNVEVDLEEQSNKK 142
Query: 109 RVLSQIQGNGNTSSDGESSHR-KKIKSST-EDVEHFQAESKGDVETNALSEAPNSPMSSE 166
+ L +GN SS E S R KK++SS+ ED ++ E + NAL E PNSP +S
Sbjct: 143 QSLVGESTDGNASSGDEPSPRNKKVRSSSLEDNKNKPGE-----DDNALIEEPNSPSASS 197
Query: 167 SLTNTLSTASA--SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFS 224
++ + ++ S+ DPS Y PPDLN+NITEIFGKLINIYRALG+DRRSFS
Sbjct: 198 DSSDLTLSRASIGMKTPSNSPSNDPSSAYCPPDLNRNITEIFGKLINIYRALGDDRRSFS 257
Query: 225 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
YYKAIPV EKLPFKIESADQVK LPGIGKS+QD+IQEIVTTGKLSKLEHFE DEKV
Sbjct: 258 YYKAIPVTEKLPFKIESADQVKNLPGIGKSLQDNIQEIVTTGKLSKLEHFETDEKV 313
>gi|348532763|ref|XP_003453875.1| PREDICTED: DNA polymerase lambda-like [Oreochromis niloticus]
Length = 564
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 180/536 (33%), Positives = 278/536 (51%), Gaps = 34/536 (6%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQ 71
+ IF G+ V+L+ G+ N R QI+++++ Q G E LS VTHV+ MD E L+
Sbjct: 38 TGNIFNGVTVYLLPAGIGNARCQIFQRQIQQNGGRTESSLSPGVTHVVVDDNMDSERALR 97
Query: 72 ----------QSVIRYQWLEDSL---RLGEKVSEDLYRIKLDPEG--ENIADRVLSQIQG 116
+++ WL + +L + S L K D E E I L+ I+
Sbjct: 98 LLKVDCMPSGVQLVKCTWLSLCISGKQLLDIASYSLLSPKSDSETKHEEIKKESLN-IKP 156
Query: 117 NGNTS----SDGESSHRKKIKSSTEDVEHFQ-AESKGDVETNALSEAPNSPMSSESLTNT 171
T +D E + + S E+V + A S+ D+E + P SL+
Sbjct: 157 AAETVIEPVTDQEENTEMTVPDSKEEVRGEEDAVSQSDLEALITGQHPKEETPGPSLSLG 216
Query: 172 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 231
TA+ P S + S + NK+IT+ L Y G+ R+ Y KA+
Sbjct: 217 PDTAAQKP-VSGKWVCAQSSQSKSNNFNKHITDKLELLAKAYTHQGDKWRALGYSKAVNA 275
Query: 232 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 291
++ I S + +PGIGK M D I+EI+ +G L KL+H E V + LF +WG
Sbjct: 276 LKSYHKPITSYQEACQIPGIGKRMADKIEEIMESGHLRKLDHI--GEAVPVLELFVNIWG 333
Query: 292 IGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 351
G TAQ Y++G RTLDD++ + LT++Q++GLK+++D R+PR E +E++++ A
Sbjct: 334 AGTKTAQLWYQQGFRTLDDIRTKAHLTNTQKIGLKHYNDFLDRMPREEAGAIEKVVRDAA 393
Query: 352 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
+ + P ++ + GSYRRGKA+CGD+DV+I HPD KSH+G +K ++ L++ FL +DL+
Sbjct: 394 QAIDPGLVAMACGSYRRGKATCGDVDVLISHPDGKSHRGIFTKVLQTLRDSGFLTDDLV- 452
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
+H E G Y G+C G RH R+D + P + +A L+ +TG+ NR +R
Sbjct: 453 -SHEENGEQK---KYMGVCRLAGHGQRHRRLDIIIVPYNEFACALMYFTGSAHFNRSMRA 508
Query: 471 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LA++K L + L G + V T L TEK+VF LG P+ EPHER+
Sbjct: 509 LAKTKRMSLSEHSLNKDVVRQGSVK-VHGGTPLPTLTEKDVFSLLGIPYREPHERD 563
>gi|327279073|ref|XP_003224283.1| PREDICTED: DNA polymerase lambda-like [Anolis carolinensis]
Length = 575
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 174/554 (31%), Positives = 279/554 (50%), Gaps = 62/554 (11%)
Query: 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ- 72
G + +++++ GV R +I+R++++Q G +V ++S +VTHV+ MD E +
Sbjct: 39 GWMEPITIYVLQAGVGQARAEIFRKQILQNGGSVCSQISPEVTHVIVDEGMDCERAFRLL 98
Query: 73 ---------SVIRYQWLEDSLRL-----------------------GEKVSEDLYRIKLD 100
+++ WL + +K S+ L + +
Sbjct: 99 RLTKLPKGLQLVKASWLSSCISAQQLLDTTGYSLFIPEKYMDEEGHSKKQSQYLDKKTIH 158
Query: 101 PEGENIADRVLSQIQGNGNTS-SDGESSHRKKIKSSTEDVEHFQAE----SKGDVETNAL 155
P+ EN + ++ Q N SD + S +K K D E + E + G++E
Sbjct: 159 PQIENAVLELKAEPQSGANVPFSDVDPSGEQKDKEVISDDEGMEEEDCMVTLGELEALKS 218
Query: 156 SEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA 215
+ PN NT S S + + S + N++ITE G L Y
Sbjct: 219 GQNPN---------NTFSGGSPVVPPTGKWVCAQSSESKKMNHNQSITEKLGLLEKAYSV 269
Query: 216 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 275
G+ RS Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRSLGYSKAINALKSYHKPVTSYQEACKIPGIGKKMAEKIMEILESGHLRKLDHI- 328
Query: 276 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 335
E V + +F +WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+
Sbjct: 329 -SESVSALEVFSNIWGAGVKTAQMWYQQGFRTLDDVRTKASLTRQQAIGLKHYEDFVERM 387
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
PR E ++E+ +++A + + P ++ + GS+RRGK++CGD+DV++ HPD SH+G SK
Sbjct: 388 PREEAAEIEQTVREAAQSIQPGLVCVACGSFRRGKSTCGDVDVLVTHPDGHSHQGVFSKL 447
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVD-TYFGLCTYPGRELRH-RIDFKVYPRDIYAF 453
+ L++ FL +DL+ S+E DSG Y G+C PG + RH R+D V P +A
Sbjct: 448 LDCLRKQGFLTDDLV----SQE--DSGNQKKYLGVCRLPGSDRRHRRLDIIVVPYSEFAC 501
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY-GSGGKQGVRARTSLKFDTEKEVF 512
L+ +TG+ NR +R LA++KG L + L G GG + V +L TEK+VF
Sbjct: 502 SLLYFTGSAHFNRSMRALAKTKGMSLSEHALSRGVVRGHGGLKTVPG-LALPTPTEKDVF 560
Query: 513 DFLGFPWLEPHERN 526
LG P+ EP ER+
Sbjct: 561 LLLGLPYREPQERD 574
>gi|302801283|ref|XP_002982398.1| hypothetical protein SELMODRAFT_155063 [Selaginella moellendorffii]
gi|300149990|gb|EFJ16643.1| hypothetical protein SELMODRAFT_155063 [Selaginella moellendorffii]
Length = 315
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 201/313 (64%), Gaps = 7/313 (2%)
Query: 215 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
LG+ RS Y K + + LP+K+ S +Q++ + G+GKS+ ++EI+ TG+L KL++
Sbjct: 8 VLGDQWRSLIYRKTVNKLRSLPYKVTSVEQIREMYGVGKSLVKMVKEILGTGQLQKLDNL 67
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 334
+ +V I + G VWGIG A++LY+KG RT+ DL+N SLT QR+G+KY+DDI R
Sbjct: 68 K--AQVGEIQVLGSVWGIGAIQARELYKKGFRTVKDLENYSSLTSMQRMGVKYYDDINLR 125
Query: 335 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 394
IPR EV E+ ++ E + P + GSYRRGK +CGD+D++I HPD SH+ L++
Sbjct: 126 IPRDEVVDTEKFVRGVVETLAPGAWVNAAGSYRRGKPTCGDVDILITHPDGSSHQDLLAR 185
Query: 395 YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
V++L+ ++F+ + L ++ +G + D + G+ + + R RID KVYPR +YAF
Sbjct: 186 LVQELRRIEFIVDGLRVDANARKG-GTQPDMFMGIFHFQCKAYR-RIDIKVYPRHVYAFA 243
Query: 455 LIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 513
L+A+TGNDVLNR++R LA K GY+L D GLF S K + S+ +TE+E+F+
Sbjct: 244 LLAFTGNDVLNRKIRFLARVKFGYKLSDQGLFIRE--SKKKDSKASTESIPCETEREIFE 301
Query: 514 FLGFPWLEPHERN 526
LG + EPH+RN
Sbjct: 302 KLGLDYPEPHDRN 314
>gi|47086063|ref|NP_998408.1| DNA polymerase lambda [Danio rerio]
gi|41107585|gb|AAH65469.1| Polymerase (DNA directed), lambda [Danio rerio]
Length = 566
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 168/550 (30%), Positives = 270/550 (49%), Gaps = 35/550 (6%)
Query: 2 APKTTRKPTPALDSNG-IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP + R P ++ G +F G+ +++V G+ R I+ +++ Q G + TH
Sbjct: 26 APPSKRTPAESITLTGTVFQGVTIYIVPAGIGKARCDIFHRQITQNGGQAVSTFAPSCTH 85
Query: 61 VL---AMDLEALLQ----------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIA 107
V+ ++D + L+ +I+ WL + + + Y ++ PE +A
Sbjct: 86 VVVDDSVDFKRALRLLKVDTLPSAVHLIKCTWLSACISEKRLLDTEDYSLR-PPESPTVA 144
Query: 108 DRVLSQ---IQGNGNTSS-------DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSE 157
S IQ ++ D H ++ + + E G V N L
Sbjct: 145 AAEKSNEATIQPVPEVAAQDPLQILDNLDPHENLTETIPPETQEEYHEEDG-VSQNDLEA 203
Query: 158 APNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALG 217
+ SES + +++ P + + NK++T+ L Y G
Sbjct: 204 LISGVHPSESNQDQKQSSADKPVLPGKWVCSQPSTTKGENHNKHLTDKLEPLAKAYTHTG 263
Query: 218 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
+ R+ Y KAI ++ I S ++ +PGIGK M D I EI+ +G L KL+H
Sbjct: 264 DKWRALGYSKAINALKSYHKPITSYEEACKIPGIGKRMADKIMEIMESGHLRKLDHI--G 321
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 337
E+V + +F +WG G TAQ Y++G RTL+D++ + L H+ R+GLK++DD+ R+PR
Sbjct: 322 EEVPVLEMFTNIWGAGAKTAQMWYQQGFRTLEDIRTKAVLNHTLRIGLKHYDDLLERMPR 381
Query: 338 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 397
E +E+ ++ A V P+++ + GSYRRG+++CGD+DV+I HPD +SHKG SK +
Sbjct: 382 SEANAIEKTVKDAAHSVDPQLLAMACGSYRRGRSTCGDVDVLITHPDGQSHKGVFSKVLH 441
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG-RELRHRIDFKVYPRDIYAFGLI 456
L + FL +DL+ +H E G Y G+C PG +L R+D V P +A L+
Sbjct: 442 LLHQSGFLTDDLV--SHEENGEQK---KYMGICRLPGPSQLHRRLDIIVVPYSEFACALL 496
Query: 457 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 516
+TG+ NR +R LA++K L + L A G + V A T L TEK VF LG
Sbjct: 497 YFTGSAHFNRSMRALAKTKNMSLSEHSLNCAVIRQRGVKLV-AGTPLHTPTEKNVFQHLG 555
Query: 517 FPWLEPHERN 526
P+ EPHER+
Sbjct: 556 IPYREPHERD 565
>gi|154147652|ref|NP_001093716.1| DNA-directed DNA polymerase lambda [Xenopus (Silurana) tropicalis]
gi|134023891|gb|AAI35822.1| poll protein [Xenopus (Silurana) tropicalis]
Length = 577
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 169/562 (30%), Positives = 282/562 (50%), Gaps = 68/562 (12%)
Query: 14 DSNGIF-AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEAL 69
D +GIF G+ +++ G+ R +I++++++Q G V + S +VTH++ MD +
Sbjct: 34 DIHGIFFEGVHAHILQAGIGLARSEIFQKQIIQNGGQVASQFSSEVTHIIVDEKMDCDRA 93
Query: 70 LQQ----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLS-QIQGNG 118
+ +++ WL ++ + V+ YRI I DR L + Q
Sbjct: 94 FRVLKLEKISHHVQLVKSAWLSLCIKEKQMVNTAGYRI-------FIPDRYLDLKDQAEK 146
Query: 119 NTSSDGESSHRKKIKSSTEDVEHF--QAESKGDVETNALSEAP--------NSPMSSESL 168
S + + + RK+ +++ H + G+ +T +S+ P + S + +
Sbjct: 147 EQSCETKRNDRKQ----HDELPHAPDKLNQAGNPQTQHVSDLPLLNYSNTSKTQNSDDDV 202
Query: 169 TNTLSTASASPDFS---SHHITDPSLLYN--------------------PPDLNKNITEI 205
++T T D S DP+ + + + N+ IT+
Sbjct: 203 SDTEDTGVTQGDLDALISGQRPDPTTVKSHRVPNTVTGKWVCAHSSESKKTNYNQFITDK 262
Query: 206 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 265
L Y G+ RS Y KAI ++ + S ++ +PGIGK M + I+EI+ +
Sbjct: 263 LEVLAKAYSVQGDRWRSLGYSKAINALKSYHKPVTSCEEAASIPGIGKKMAEKIEEILDS 322
Query: 266 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 325
G L KL+H + V + +F +WG G TAQ Y++G RTLDD++ + +LT Q +GL
Sbjct: 323 GHLRKLDHIS--DSVAVLEIFSNIWGAGVKTAQSWYQQGFRTLDDIRTKGNLTTQQAIGL 380
Query: 326 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 385
K++DD R+PR E ++E+ +++A V PE+I + GS+RRGKA+CGD+DV++ HPD
Sbjct: 381 KHYDDFLDRMPRDEAGKIEQTVREAAHAVNPELICVACGSFRRGKATCGDVDVLVTHPDG 440
Query: 386 KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFK 444
KSH+G SK + LK FL +DL+ + + Y G+C+ PG RH R+D
Sbjct: 441 KSHRGVFSKLIDGLKAQGFLTDDLV-----NQEVNGNQKKYLGVCSLPGEGQRHRRLDII 495
Query: 445 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 504
V P +A ++ +TG+ NR +R LA++KG L + L + + V A L
Sbjct: 496 VVPYGEFACAIMYFTGSAHFNRSMRALAKTKGMSLSEHSLNKNVVRNRSVK-VSAGCPLP 554
Query: 505 FDTEKEVFDFLGFPWLEPHERN 526
TEKE+F+ LG P+ EPHER+
Sbjct: 555 TPTEKEIFEILGLPFREPHERD 576
>gi|33416901|gb|AAH55597.1| Polymerase (DNA directed), lambda [Danio rerio]
gi|197247243|gb|AAI65409.1| Poll protein [Danio rerio]
Length = 566
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 269/550 (48%), Gaps = 35/550 (6%)
Query: 2 APKTTRKPTPALDSNG-IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP R P ++ G +F G+ +++V G+ R I+ +++ Q G + TH
Sbjct: 26 APPFKRSPAESITLTGTVFQGVTIYIVPAGIGKARCDIFHRQITQNGGQAVSTFAPSCTH 85
Query: 61 VL---AMDLEALLQ----------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIA 107
V+ ++D + L+ +I+ WL + + + Y + L PE +A
Sbjct: 86 VVVDDSVDFKRALRLLKVDTLPSAVHLIKCTWLSACISEKRLLDTEDYSL-LPPESPTVA 144
Query: 108 DRVLSQ---IQGNGNTSS-------DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSE 157
S IQ ++ D H ++ + + E G V N L
Sbjct: 145 AAEKSNEATIQPVPEVAAQDPLQILDNLDPHENLTETIPPETQEEYHEEDG-VSQNDLEA 203
Query: 158 APNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALG 217
+ SES + +++ P + + NK++T+ L Y G
Sbjct: 204 LISGVHPSESNQDQEQSSADKPVLPGKWVCSQPSTTKGENHNKHLTDKLEPLAKAYTHTG 263
Query: 218 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
+ R+ Y KAI ++ I S ++ +PGIGK M D I EI+ +G L KL+H
Sbjct: 264 DKWRALGYSKAINALKSYHKPITSYEEACKIPGIGKRMADKIMEIMESGHLRKLDHI--G 321
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 337
E+V + +F +WG G TAQ Y++G RTL+D++ + L H+ R+GLK++DD+ R+PR
Sbjct: 322 EEVPVLEMFTNIWGAGAKTAQMWYQQGFRTLEDIRTKAVLNHTLRIGLKHYDDLLERMPR 381
Query: 338 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 397
E +E+ ++ A V P+++ + GSYRRG+++CGD+DV+I HPD +SHKG SK +
Sbjct: 382 SEANAIEKTVKDAAHSVDPQLLAMACGSYRRGRSTCGDVDVLITHPDGQSHKGVFSKILH 441
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG-RELRHRIDFKVYPRDIYAFGLI 456
L + FL +DL+ +H E G Y G+C PG +L R+D V P +A L+
Sbjct: 442 LLHQSGFLTDDLV--SHEENGEQK---KYMGICRLPGTSQLHRRLDIIVVPYSEFACALL 496
Query: 457 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 516
+TG+ NR +R LA++K L + L A G + V A T L TEK VF LG
Sbjct: 497 YFTGSAHFNRSMRALAKTKNMSLSEHSLNCAVIRQRGVKLV-AGTPLHTPTEKNVFQHLG 555
Query: 517 FPWLEPHERN 526
P+ EPHER+
Sbjct: 556 IPYREPHERD 565
>gi|300796521|ref|NP_001179488.1| DNA polymerase lambda [Bos taurus]
gi|296472781|tpg|DAA14896.1| TPA: polymerase (DNA directed), lambda [Bos taurus]
Length = 575
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 175/559 (31%), Positives = 269/559 (48%), Gaps = 76/559 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +RV ++ G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSVRVHVLPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 73 -------SVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNG-- 118
+++ WL L RL + ++ K LD + AD+V G G
Sbjct: 101 PQLPPGAQLVKSAWLSSCLQERRLVDTAGFGIFTPKRYLDQAQLSKADQVSFTPPGAGEA 160
Query: 119 ------------------------------NTSSDGESSHRKKIKSSTEDVEHFQAESKG 148
TSSDGE+S ++ + S D+E A G
Sbjct: 161 QPRTALSPSRPPTRPVSPSWRADAVASIQAQTSSDGEASDGEETQVSAADLE---ALISG 217
Query: 149 DVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGK 208
T + SP + E L + +S +H N +ITE
Sbjct: 218 RYPTPFEGDGEPSP-APEGLDKWVCAQPSSQKAINH--------------NPHITEKLEV 262
Query: 209 LINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKL 268
L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L
Sbjct: 263 LAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHL 322
Query: 269 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 328
KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ LT Q +GLK++
Sbjct: 323 RKLDHI--SESVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQACLTTQQAIGLKHY 380
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
DD R+PR E ++E+ ++KA + + P ++ + GSYRRGKA+CGD+DV++ HPD +SH
Sbjct: 381 DDFLDRMPREEAAEIEQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRSH 440
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYP 447
+G S+ + L++ FL +DL+ +H E G Y G+C PG RH R+D V P
Sbjct: 441 QGVFSRLLDSLRQQGFLTDDLV--SHEENGQQ---QKYLGVCQLPGPGRRHRRLDIIVVP 495
Query: 448 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 507
A L+ +TG+ NR +R LA++KG L + L A S V + L T
Sbjct: 496 YSELACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRSAQGLKVGSGQVLPTPT 555
Query: 508 EKEVFDFLGFPWLEPHERN 526
EK+VF FLG P+ EP ER+
Sbjct: 556 EKDVFRFLGLPYREPAERD 574
>gi|440912422|gb|ELR61992.1| DNA polymerase lambda [Bos grunniens mutus]
Length = 575
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 175/559 (31%), Positives = 269/559 (48%), Gaps = 76/559 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +RV ++ G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSVRVHVLPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 73 -------SVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNG-- 118
+++ WL L RL + ++ K LD + D+V G G
Sbjct: 101 PQLPPGAQLVKSAWLSSCLQERRLVDTAGFGIFTPKRYLDQAQLSKTDQVSFTPPGAGEA 160
Query: 119 ------------------------------NTSSDGESSHRKKIKSSTEDVEHFQAESKG 148
TSSDGE+S ++ + S D+E A G
Sbjct: 161 QPRTALSPSRPPTRPVSPSWRADAVASIQAQTSSDGEASDGEETQVSAADLE---ALISG 217
Query: 149 DVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGK 208
T + SP + ESL + +S +H N +ITE
Sbjct: 218 RYPTPFEGDGEPSP-APESLDKWVCAQPSSQKAINH--------------NPHITEKLEV 262
Query: 209 LINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKL 268
L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L
Sbjct: 263 LAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHL 322
Query: 269 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 328
KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ LT Q +GLK++
Sbjct: 323 RKLDHI--SESVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQACLTTQQAIGLKHY 380
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
DD R+PR E ++E+ ++KA + + P ++ + GSYRRGKA+CGD+DV++ HPD +SH
Sbjct: 381 DDFLDRMPREEAAEIEQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRSH 440
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYP 447
+G S+ + L++ FL +DL+ +H E G Y G+C PG RH R+D V P
Sbjct: 441 QGVFSRLLDSLRQQGFLTDDLV--SHEENGQQ---QKYLGVCQLPGPGRRHRRLDIIVVP 495
Query: 448 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 507
A L+ +TG+ NR +R LA++KG L + L A S V + L T
Sbjct: 496 YSELACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRSAQGLKVGSGQVLPTPT 555
Query: 508 EKEVFDFLGFPWLEPHERN 526
EK+VF FLG P+ EP ER+
Sbjct: 556 EKDVFRFLGLPYREPAERD 574
>gi|363735532|ref|XP_001232209.2| PREDICTED: DNA polymerase lambda [Gallus gallus]
Length = 543
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 169/538 (31%), Positives = 275/538 (51%), Gaps = 44/538 (8%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL-AMDLEA-----LLQQS---- 73
++++ G+ R +I+ +++VQ G V +L +VTHV+ A D++ LL+ +
Sbjct: 14 AYVLQAGIGQARAEIFHKQIVQNGGCVHNRLCSEVTHVIVAEDMDCDRAFRLLKLAKLPS 73
Query: 74 ---VIRYQWLEDSLRLGEKVSEDLYRI----KLDPEGENIADRVLSQIQGNGNTSSDGES 126
+++ WL D +R + ++ Y + + EGE + S+ + S E
Sbjct: 74 RLQLVKASWLSDCIRDQKLLNTTGYSVFIPRRYREEGEQQQQLLGSEEIRSSTEESTAEP 133
Query: 127 SHRKKIKSSTED-----VEHFQAESKGDVETNALSEAPNSPMSSESL------------T 169
+ + ++ S++ +H +E D E + +A + E+L T
Sbjct: 134 NAKAQLGDSSQQNLDSLAQHQPSEKVYDDEDSEGEDASVTQGDLEALISGHYPVKLSEET 193
Query: 170 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 229
+ S+A A P +S + S + N+ ITE L Y G+ R+ Y KAI
Sbjct: 194 SDSSSAVAQP--ASKWVCAQSSNSKKENHNQCITEKLEVLAKAYSVQGDKWRALGYAKAI 251
Query: 230 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 289
++ + S + +PGIGK M + I EI+ +G L KL+H E V + LF +
Sbjct: 252 NALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLELFSNI 309
Query: 290 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+PR E ++E+ +++
Sbjct: 310 WGAGVKTAQMWYQQGFRTLDDIRTKASLTSQQAVGLKHYEDFLERMPREEAAEIEQTVRQ 369
Query: 350 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G SK + L E FL +DL
Sbjct: 370 AALALKPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGLFSKLLDSLHESGFLTDDL 429
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+ E+ D Y G+C PG RH R+D V P +A L+ +TG+ NR +
Sbjct: 430 V---SQEDNGDQ--KKYLGVCRLPGPARRHRRLDIIVVPYSEFACALLYFTGSAHFNRSM 484
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LA++KG L + L A G V + +L TE++VF LG P+ EP ER+
Sbjct: 485 RALAKTKGMSLSEHALSMAVVRGPGGVKVASGHALPTPTERDVFIQLGLPYREPSERD 542
>gi|410918281|ref|XP_003972614.1| PREDICTED: DNA polymerase lambda-like [Takifugu rubripes]
Length = 565
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 168/538 (31%), Positives = 276/538 (51%), Gaps = 37/538 (6%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQ 71
+ FAG+ +++ G+ N R QI+++++ Q G E LS +THV+ MD++ ++
Sbjct: 38 TGNTFAGVTAYVLPAGIGNARHQIFQRQIKQNGGQTENALSPGITHVIVDDNMDVDRAVR 97
Query: 72 ----------QSVIRYQWLEDSLRLGEKVSEDLYRIKL-DPEGENIADRV-----LSQIQ 115
+++ WL S+ + EK D+ R L P E+ R + ++
Sbjct: 98 LLKVPCVPPGVHLVKCTWL--SMCISEKKLLDVGRYSLLSPMRESETGREDVPCEKASVE 155
Query: 116 GNGNTSSD--GESSHRKKIKSSTEDVEHFQAE----SKGDVETNALSEAPNSPMSSESLT 169
T+SD + + + I + + + Q E S+ D+E + P + +
Sbjct: 156 NTLETASDRPDQVTQEEPINVTEPESKAVQGEEDLVSQNDLEALMSGQHPKEKTTVSNHG 215
Query: 170 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 229
L A+A + S + NK+IT+ L Y G+ R+ Y KA+
Sbjct: 216 PDLE-AAAQQVVPGKWVCAQSSQSKSNNFNKHITDKLEILAKAYTHQGDKWRALGYSKAV 274
Query: 230 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 289
++ + S + +PGIGK M D I EI+ +G L KL+H E V + LF +
Sbjct: 275 NALKSHHKPVTSYQEACQIPGIGKRMADKIDEIMESGHLRKLDHI--GEAVPVLELFTNI 332
Query: 290 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
WG G TAQ Y++G RTL+D++ + L+ +Q++GLK++DD R+PR E +E++++
Sbjct: 333 WGAGAKTAQLWYQQGFRTLEDIRTKAHLSSTQKIGLKHYDDFLDRMPREEAAAIEKVVRD 392
Query: 350 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
A V P ++++ GSYRRGKA+CGD+DV+I HPD KSHKG +K ++ L + FL +DL
Sbjct: 393 AALAVDPHLVVMACGSYRRGKATCGDVDVLISHPDGKSHKGVFTKVLQSLHDSGFLTDDL 452
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+ +H E G Y G+C PG RH R+D V P + +A L+ +TG+ NR +
Sbjct: 453 V--SHEENGEQK---KYMGVCRLPGPGQRHRRLDVIVVPYNEFACALMYFTGSAHFNRSM 507
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LA++K L + L G + V L TE++VF+ LG P+ +P+ER+
Sbjct: 508 RALAKTKSMSLSEHSLNKNVVRKGSVK-VFGGAPLATLTERDVFNLLGVPYRQPNERD 564
>gi|432847957|ref|XP_004066233.1| PREDICTED: DNA polymerase lambda-like [Oryzias latipes]
Length = 577
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 174/564 (30%), Positives = 281/564 (49%), Gaps = 51/564 (9%)
Query: 2 APKTTRKPTPA-LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP +KP + F+ + V+L+ G+ N R QI+++++ QMG +E L VTH
Sbjct: 25 APPMKKKPDEIEVKGGNPFSRLTVYLLPAGIGNARCQIFQRQIQQMGGQLESSLCAAVTH 84
Query: 61 VL---AMDLEALLQ----------QSVIRYQWLEDSLRLGEKVSEDLYRIKL-DPEGENI 106
V+ +MD + +L+ +++ WL + + + D Y ++L D +G ++
Sbjct: 85 VVVDDSMDGDRVLRLLKVDGLPSGVHLVKCSWLSMCISERKLLDMDGYSLQLLDMDGYSL 144
Query: 107 ADRVLSQIQGNGNTSSDGE-SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSS 165
+L + S E + K I + D E Q + + T + +
Sbjct: 145 ---LLPKRSSESKLESVSEKQADFKSIAENFPDPETLQTKQEEAALTQTIPDTKEEVGGE 201
Query: 166 ESLTN-----TLST----------ASASPD--------FSSHHITDPSLLYNPPDLNKNI 202
E + L T AS +PD + S + NK+I
Sbjct: 202 EDCVSQSDLVALITGQHPEEESPGASGNPDPEAVVEKTVPGKWVCAQSSKSKTNNFNKHI 261
Query: 203 TEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI 262
T+ L Y G+ R+ Y KA+ ++ + S + +PGIGK M D I EI
Sbjct: 262 TDKLELLAKAYTHQGDKWRALGYSKAVNALKSYHKPVTSYQEACQIPGIGKRMADKIDEI 321
Query: 263 VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR 322
+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++ + L+ +Q+
Sbjct: 322 MESGHLRKLDHI--GEAVPVLELFTNIWGAGAKTAQLWYQQGFRTLEDIRTKARLSATQK 379
Query: 323 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 382
+GLK+++D R+PR E +E+++++A + P ++ + GSYRRGKA+CGD+DV+I H
Sbjct: 380 IGLKHYNDFLERMPREEAAAIEKVVREAVRTLDPGLVAVACGSYRRGKATCGDVDVLITH 439
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRID 442
PD KSH+G SK ++ L + FL +DL+ +H E G Y G+C PG R R+D
Sbjct: 440 PDGKSHRGVFSKVLQILHDDGFLTDDLV--SHEENGEQK---KYMGVCRLPGHRHR-RLD 493
Query: 443 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
+ P D +A L+ +TG+ NR +R LA++KG L + L G + V A +
Sbjct: 494 IIIVPYDEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHSLNKDVVRQGTSK-VCAGSP 552
Query: 503 LKFDTEKEVFDFLGFPWLEPHERN 526
+ TEK+VF LG P+ EPHER+
Sbjct: 553 VPTQTEKDVFSLLGIPYREPHERD 576
>gi|426252963|ref|XP_004020172.1| PREDICTED: DNA polymerase lambda isoform 1 [Ovis aries]
Length = 575
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 173/552 (31%), Positives = 270/552 (48%), Gaps = 62/552 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +RV +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSLRVHVVPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 73 -------SVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNGNT 120
+++ WL L RL + ++ K LD + AD+V +
Sbjct: 101 PQLPPGAQLVKSAWLSLCLQERRLVDTAGFGIFTPKRYLDQAQLSKADQV------SFTP 154
Query: 121 SSDGESSHRKKIKSS------------TEDVEHFQAESKGDVETNALSEAPNSPMSSESL 168
GE+ R + S T+ V QA++ D ET+ E S E+L
Sbjct: 155 PRAGEAQPRTALSPSRPLTRHVSPSWRTDAVASIQAQTSSDGETSDGEEPQVSAADLEAL 214
Query: 169 TNTL--------STASASPD-----FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA 215
+ S +P+ + + ++ YNP +ITE L Y
Sbjct: 215 ISGRYPTPFEGDDEPSPAPEGLGKWVCAQPSSQKAINYNP-----HITEKLEVLAKAYSV 269
Query: 216 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 275
G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVSSYQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI- 328
Query: 276 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 335
E V + LF +WG G TAQ Y +G R L+D++N LT Q +GLK++DD R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYHQGFRCLEDIRNHACLTTQQAIGLKHYDDFLDRM 387
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
PR E ++E+ +++A + + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S+
Sbjct: 388 PREEAAEIEQTVREAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRSHQGVFSRL 447
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFG 454
+ L++ FL +DL+ +H E G Y G+C PG RH R+D V P A
Sbjct: 448 LDSLRQQGFLTDDLV--SHEENGQQ---QKYLGVCQLPGPGRRHRRLDIIVVPYSELACA 502
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
L+ +TG+ NR +R LA++KG L + L A S V + L TEK+VF F
Sbjct: 503 LLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRSAQGLKVGSGQVLPTPTEKDVFRF 562
Query: 515 LGFPWLEPHERN 526
LG P+ EP ER+
Sbjct: 563 LGLPYREPAERD 574
>gi|291404681|ref|XP_002718713.1| PREDICTED: DNA-directed DNA polymerase lambda [Oryctolagus
cuniculus]
Length = 575
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 169/563 (30%), Positives = 268/563 (47%), Gaps = 90/563 (15%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQS----- 73
+RV +V G+ R +++ +++VQ G V + VTH++ +D E L+
Sbjct: 44 LRVHVVPTGIGRARAELFEKQVVQHGGQVCPAQAPGVTHIVVDEDVDCERALRLLRLPRL 103
Query: 74 -----VIRYQWLEDSLRLGEK----------------------------------VSEDL 94
+++ WL SL L E+ E L
Sbjct: 104 PAGARLVKSAWL--SLCLQEQRLVDTAGFQVFVPSRYLDQPQPSKADGDSSPPPGTHEAL 161
Query: 95 YRIKLDPEGENIADRVLSQIQGNGNT-----SSDGESSHRKKIKSSTEDVE-----HFQA 144
R L P L G + +SD E+S ++ + S D+E H+
Sbjct: 162 LRTALSPASPPTRPGALPPKAGKAPSTQAQPASDDEASDGEEPQVSAADLEALLSGHYPT 221
Query: 145 ESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITE 204
+GD E S AP E+L + +S ++H N +ITE
Sbjct: 222 RPEGDAEP---SPAP------EALEKWVCAQPSSQKATNH--------------NSHITE 258
Query: 205 IFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT 264
L Y G+ R+ Y KAI ++ P + S + +PG+GK M + I EI+
Sbjct: 259 KLEVLAKAYSVQGDKWRALGYAKAINALKSFPKPVSSYQEACSIPGVGKRMAEKIVEILE 318
Query: 265 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG 324
+G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +G
Sbjct: 319 SGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIG 376
Query: 325 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 384
LK++DD R+PR E ++E+ +++A + P ++ + GS+RRGKA+CGD+DV+I HPD
Sbjct: 377 LKHYDDFLERMPREEAAEIEQTVREAAQAFNPGLLCVACGSFRRGKATCGDVDVLITHPD 436
Query: 385 RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDF 443
++H+G S+ + L++ FL +DL+ +H E G Y G+C PG RH R+D
Sbjct: 437 GRAHQGIFSRLLDSLRQRGFLTDDLV--SHEENGLQ---QKYLGVCRLPGPGRRHRRLDI 491
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
+ P +A L+ +TG+ NR +R LA++KG L + L A + V +L
Sbjct: 492 IIVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHTLSMAVVRNSRGCKVAPGQAL 551
Query: 504 KFDTEKEVFDFLGFPWLEPHERN 526
TEK+VF LG P+ EP ER+
Sbjct: 552 PTPTEKDVFRLLGLPYREPAERD 574
>gi|395502283|ref|XP_003755511.1| PREDICTED: DNA polymerase lambda [Sarcophilus harrisii]
Length = 565
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/539 (29%), Positives = 267/539 (49%), Gaps = 33/539 (6%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEAL 69
L+ + ++V ++ G+ R +I+ ++++Q G + + +TH++ A+D E
Sbjct: 34 LEGGEWLSPLQVHVLPAGIGRARAEIFEKQIIQHGGRICSPQAPGITHIVVDEAVDCERA 93
Query: 70 LQ----------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ-GNG 118
L+ +++ WL L+ + V + I + + D ++ Q G
Sbjct: 94 LRLLKLSQLPLGVQIVKSAWLSQCLQEQKLVDTAGFSIFIPDRYLDETDNQVTSFQPGCS 153
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGD-VETNALSEAPNSPMSSESLTN----TLS 173
TS+ E +++ + E++ E +P E+L +
Sbjct: 154 GTSAQAGLPSAAAFAPPQEPHSELNTQTQPNSYESSDEEEVQVTPADLEALITGRYPSTP 213
Query: 174 TASASPDFSSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSYYKA 228
A P + ++D + P + N +ITE L Y G+ RS SY KA
Sbjct: 214 EGDAMPCLAPT-VSDKWVCAQPSSQKRTNHNSHITEKLEVLAKAYAVQGDRWRSLSYSKA 272
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
I ++ + S + G+PGIGK M + I EIV +G L KL+H + V + LF
Sbjct: 273 INALKSFHKPVSSYQEACGIPGIGKRMAEKIMEIVESGHLRKLDHI--SDSVPVLELFSN 330
Query: 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
+WG+G TAQ Y++G RTL+D+++ +LT Q +GLK+++D RIPR E ++E+ ++
Sbjct: 331 IWGVGSKTAQMWYQQGFRTLEDIESRATLTSQQAIGLKHYEDFLKRIPREEASEIEQTVR 390
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
+A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G + + L++ FL +D
Sbjct: 391 EAAHALNPGLLSVACGSYRRGKATCGDVDVLVTHPDGRSHQGIFGQLLDTLRQQGFLTDD 450
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
L+ + + G Y G+C PG L R+D V P +A L+ +TG+ NR
Sbjct: 451 LV--SQDDNGQQ---QKYLGVCRLPGPGRLHRRLDIIVVPYSEFACALLYFTGSAYFNRS 505
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+R LA++KG L + L+ A G V +L TEK+VF LG P+ EP ER+
Sbjct: 506 MRALAKTKGMSLSERSLYTAVVRDGRGLKVGPGRALPTPTEKDVFRLLGLPYREPSERD 564
>gi|326923796|ref|XP_003208120.1| PREDICTED: DNA polymerase lambda-like [Meleagris gallopavo]
Length = 576
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 176/545 (32%), Positives = 282/545 (51%), Gaps = 57/545 (10%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL-AMDLEA-----LLQQS---- 73
++++ + R +I+ +++VQ G V +L +VTHV+ A D++ LL+ +
Sbjct: 46 AYVLQASIGQARAEIFHKQIVQNGGFVHSRLCSEVTHVIVAEDMDCDRAFRLLKLAKLPS 105
Query: 74 ---VIRYQWLEDSLRLGEKVSEDLYRI----KLDPEGENI------ADRVLSQIQGN--- 117
+++ WL D +R + ++ Y + + EGE ++ + S +G+
Sbjct: 106 RLQLVKASWLSDCIRDQKLLNTAGYSVFIPRRYREEGEQQQQQFLGSEEIQSSTEGSAAE 165
Query: 118 -------GNTSSDGESSHRKKIKSST----EDVEHFQAE-SKGDVETNALSEAPNSPMSS 165
G++S S ++ S ED E A ++GD+E AL + P+
Sbjct: 166 PNVKAQVGDSSQQNPGSLAQQQPSEKVYDDEDSEGEDASVTQGDLE--ALISG-HYPVKL 222
Query: 166 ESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSY 225
T+ S+A A P S + S + N+ ITE L Y G+ R+ Y
Sbjct: 223 SEETSGSSSAVAQP--VSKWVCAQSSHSKKENHNQCITEKLEVLAKAYSVQGDKWRALGY 280
Query: 226 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 285
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + L
Sbjct: 281 AKAINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLEL 338
Query: 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 345
F +WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+PR E ++E+
Sbjct: 339 FSNIWGAGVKTAQMWYQQGFRTLDDIRTKASLTSQQAVGLKHYEDFLERMPREEAAEIEQ 398
Query: 346 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 405
+++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G SK + L E FL
Sbjct: 399 TVRQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGLFSKLLDNLHESGFL 458
Query: 406 REDLIFSTHSEEGTDSGVD-TYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDV 463
+DL+ S+E D+G Y G+C PG RH R+D V P +A L+ +TG+
Sbjct: 459 TDDLV----SQE--DNGEQKKYLGVCRLPGPARRHRRLDIIVVPYSEFACALLYFTGSAH 512
Query: 464 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLE 521
NR +R LA++KG L + L A G +GV+ + L TE++VF LG P+ E
Sbjct: 513 FNRSMRALAKTKGMSLSEHALSMAVV--RGPRGVKMASGHVLPTPTERDVFTQLGLPYRE 570
Query: 522 PHERN 526
P ER+
Sbjct: 571 PSERD 575
>gi|311705739|gb|ADQ01135.1| DNA polymerase lambda [Alouatta sara]
Length = 575
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 169/548 (30%), Positives = 266/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ---- 71
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKRIVQHGGQLCPAQAPGVTHIVVDDGMDYERALCLLRL 100
Query: 72 ------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SSD 123
+++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSSI 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ ++ + QA+ D ET+ E S E+
Sbjct: 154 PSGTHEALLQTALFPPPSPTRPVSPPQKAKEAPNTQAQPISDDETSDGEETQVSTADLEA 213
Query: 168 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 219
L + S D + + D + P + N +ITE L Y G+
Sbjct: 214 LISGHYPTSIEGDCEPRVAPEVLDKWVCAQPSSQKVTNHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACRIPGIGKRMAEKIVEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++DD R+PR E
Sbjct: 332 VPVLELFSNIWGAGSKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYDDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + P ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L
Sbjct: 392 ATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDVLITHPDGRSHQGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGHRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + V L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVAPGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|126273242|ref|XP_001369819.1| PREDICTED: DNA polymerase lambda [Monodelphis domestica]
Length = 564
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 159/539 (29%), Positives = 262/539 (48%), Gaps = 52/539 (9%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---------AMDLEALLQ- 71
++V ++ G+ R +I+ ++++Q G + + +TH++ A+ L L Q
Sbjct: 43 LQVHVLPVGIGRARAEIFEKQIIQHGGQICSPQAPGITHIVVDETVDGERALRLLKLPQL 102
Query: 72 ---QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ-GNGNTSSDGESS 127
+++ WL L+ + V D + + P D+ Q G TS+ S
Sbjct: 103 PLGAQLVKSAWLSQCLKEQKLVDTDGFHVVFIPN--RYLDKADISFQPGPSGTSAQAGLS 160
Query: 128 HRKKIKSSTEDVEHFQAESKG-----------------DVETNALSEAPNSPM--SSESL 168
+ E +++ D+E P++P + SL
Sbjct: 161 SVAPLAPPQEPHSRLGIQAQANSDDEDSDEEEVRVTPDDLEALITGRYPSTPEGDTEPSL 220
Query: 169 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 228
LS SS +T+ +L +ITE L Y G+ R+ Y KA
Sbjct: 221 APNLSEKWVCAQPSSQKMTNHNL---------HITEKLEVLAKAYAVQGDRWRTLGYSKA 271
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
I ++ P + S + G+PGIGK M + I EIV +G L KL+H + V + LF
Sbjct: 272 INALKSFPKPVSSYQEACGIPGIGKRMAEKIMEIVESGHLRKLDHI--SDSVPILELFSN 329
Query: 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
+WG+G TAQ Y++G RTL+D++++ +L+ Q +GLK+++D RIPR E ++E+ ++
Sbjct: 330 IWGVGAKTAQMWYQQGFRTLEDIQSQATLSTQQAIGLKHYEDFLKRIPREEAAEIEKTVR 389
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
+ + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L++ FL +D
Sbjct: 390 ETAHTLNPGLLSVACGSYRRGKATCGDVDVLVTHPDGRSHQGIFSQLLDALRKRGFLTDD 449
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
L+ + + G Y G+C PG H R+D V P +A L+ +TG+ NR
Sbjct: 450 LV--SQDDNGQQ---QKYLGVCQLPGPGRHHRRLDIIVVPYSEFACALLYFTGSAYFNRS 504
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+R LA++KG L + L A G V +L TEK+VF LG P+ EP ER+
Sbjct: 505 MRALAKTKGMSLSEHALSTAIVRDGHGVKVGPGRALPTPTEKDVFKLLGLPYREPSERD 563
>gi|255588188|ref|XP_002534528.1| DNA polymerase lambda, putative [Ricinus communis]
gi|223525109|gb|EEF27858.1| DNA polymerase lambda, putative [Ricinus communis]
Length = 126
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 113/126 (89%), Positives = 117/126 (92%)
Query: 402 MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGN 461
MKFLREDL+FS HSEEGTDSGVDTYFGLCTYPGR LRHRIDFKVYPRDIYAFGLIAWTGN
Sbjct: 1 MKFLREDLVFSIHSEEGTDSGVDTYFGLCTYPGRGLRHRIDFKVYPRDIYAFGLIAWTGN 60
Query: 462 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
DVLNRRLRLLAESKG+RLDDTGLFPAT S GK+G RA SL+ DTEKEVFDFLGFPWLE
Sbjct: 61 DVLNRRLRLLAESKGFRLDDTGLFPATQASAGKRGSRATASLRLDTEKEVFDFLGFPWLE 120
Query: 522 PHERNL 527
PHERNL
Sbjct: 121 PHERNL 126
>gi|73998286|ref|XP_850651.1| PREDICTED: DNA polymerase lambda isoform 2 [Canis lupus familiaris]
Length = 576
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 168/556 (30%), Positives = 266/556 (47%), Gaps = 69/556 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ---- 71
+ +R +V G+ R +++ ++++Q G + + +TH++ MD E L+
Sbjct: 41 LSSLRAHVVPSGIGRARAELFEKQIIQHGGQICAAHASGLTHIVVDEGMDGERALRLVGL 100
Query: 72 ------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGE 125
+++ WL L+ G V + I + + Q+ S
Sbjct: 101 SQLPQGAQLVKSTWLSLCLQEGRLVDTAGFSICIPSRYPGLQ----PQLSKADQEFSAPP 156
Query: 126 SSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 169
SH +K++ TE+ QA+ D ET+ E S E+L
Sbjct: 157 GSHEALLKTALTPPRSATRPVSPPQRTEEAPSTQAQLGSDAETSDGEETQVSAADLEALI 216
Query: 170 NTLSTASASPDFSSHHITDPSLLYNPPDLNK----------------NITEIFGKLINIY 213
S +S+H D P L+K +ITE L Y
Sbjct: 217 --------SGHYSTHPEGDDDPRPAPKGLDKWVCAQPSSQKAVNHNPHITEKLEVLAKAY 268
Query: 214 RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 273
G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L KL+H
Sbjct: 269 SVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHLRKLDH 328
Query: 274 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 333
E V + LF +WG G TAQ Y++G+RTL+D++N+ SLT Q +GLK++DD
Sbjct: 329 I--SESVPILELFSNIWGAGTKTAQMWYQQGYRTLEDIRNQASLTTQQAIGLKHYDDFLE 386
Query: 334 RIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS 393
RIPR E ++E+ ++K+ + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S
Sbjct: 387 RIPREEATEIEQTVRKSAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGQSHQGIFS 446
Query: 394 KYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYA 452
+ + L+ FL +DL+ + E G Y G+C PG RH R+D + P +A
Sbjct: 447 RLLDSLRRQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRRHRRLDIIIVPYSEFA 501
Query: 453 FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKE 510
L+ +TG+ NR +R LA++KG L + L +T QG++ L TEK+
Sbjct: 502 CALLYFTGSAHFNRSMRALAKTKGMSLSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKD 559
Query: 511 VFDFLGFPWLEPHERN 526
VF LG P+ EP ER+
Sbjct: 560 VFRLLGLPYREPVERD 575
>gi|311705751|gb|ADQ01141.1| DNA polymerase lambda [Callicebus cupreus]
Length = 575
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 168/548 (30%), Positives = 269/548 (49%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVCTGIGRARAELFEKQIVQHGGQLCPAQAPDVTHIVVDDGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SSD 123
+++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSSI 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ + + QA+ D ET+ E S E+
Sbjct: 154 PSGTHEALLQTALFPPPSPTRPVFPPQKAKGAPNTQAQPISDDETSDGEETQVSTADLEA 213
Query: 168 LTNTLSTASASPDF---SSHHITDPSLLYNP-----PDLNKNITEIFGKLINIYRALGED 219
L + S D+ + + D + P + N +ITE L Y G+
Sbjct: 214 LISGHYPTSIEGDYEPRPTPEVLDKWVCAQPSSQKVANHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E+
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI--SER 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++DD R+PR E
Sbjct: 332 VPVLELFSNIWGAGSKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYDDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + P ++ + GSYRRGKA+CGD+D++I HPD +SH+G S+ + +L
Sbjct: 392 ATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDMLITHPDGRSHQGIFSRLLDRL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGQRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + V L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVGLGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|351715599|gb|EHB18518.1| DNA polymerase lambda [Heterocephalus glaber]
Length = 572
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 168/571 (29%), Positives = 266/571 (46%), Gaps = 69/571 (12%)
Query: 2 APKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHV 61
AP K +S + +RV +V G+ R +++ ++++Q G + + VTH+
Sbjct: 24 APAKIPKRQEGEESGEWLSSLRVHVVPTGIGRTRAELFEKQIIQHGGQICPAQAPGVTHI 83
Query: 62 L---AMDLEALLQQ----------SVIRYQWLEDSLRLGEKVSEDLYRI-----KLD--- 100
+ AMD E L+ +++ WL L+ V + I LD
Sbjct: 84 VVDEAMDCERALRLLRLPWLPPGTQLVKSAWLSLCLQERRLVDTASFSILIPNRNLDQPQ 143
Query: 101 ----------PEG--ENIADRVLSQIQGNGNTSSDGESSHRKKIKSS----TEDVEHFQA 144
P G E + S + G + E + + + S T DVE Q
Sbjct: 144 PTKAEQDSSAPPGSHEVLLKTAFSSLSGAVSPPQKAEEASSTQAQPSSNDETSDVEGPQV 203
Query: 145 ESKGDVETNALSEAPNSP-------MSSESLTNTLSTASASPDFSSHHITDPSLLYNPPD 197
S D+E P P + E+L + +S ++H
Sbjct: 204 -SAADLEALISGNYPTPPEENSGPGPAPEALDKWVCAQPSSQKVTNH------------- 249
Query: 198 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N +ITE L+N Y G+ R+ Y KAI ++ + S + +PG+GK M +
Sbjct: 250 -NLHITEKLEVLVNAYSVQGDKWRALGYTKAISALKSFHKPVSSYQEACSIPGVGKRMAE 308
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 317
I EI+ +G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ SL
Sbjct: 309 KIMEILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQASL 366
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q +GLK++ D R+PR E ++E+ ++ A + + P + + GSYRRGK +CGD+D
Sbjct: 367 TDQQAIGLKHYSDFLERMPREEAAEIEQTVRVAAQALSPGLWCVACGSYRRGKLTCGDVD 426
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST-HSEEGTDSGVDTYFGLCTYPGRE 436
V++ HPD +SH+G S+ + KL++ FL +DL+ H ++ Y G+C PG
Sbjct: 427 VLVTHPDGRSHRGIFSRLLDKLRQQGFLTDDLLSQEDHCQQ------QKYLGVCQLPGPG 480
Query: 437 LRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
RH R+D V P +A L+ +TG+ NR +R LA++K L + L A
Sbjct: 481 RRHRRLDIIVVPYSQFACALLYFTGSAHFNRSMRALAKTKSMSLSEHALCTAVVRDTQGS 540
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ L TEK+VF LG P+ EP ER+
Sbjct: 541 KLGPGHVLPTPTEKDVFWLLGLPYREPAERD 571
>gi|354496552|ref|XP_003510390.1| PREDICTED: DNA polymerase lambda isoform 1 [Cricetulus griseus]
gi|344253425|gb|EGW09529.1| DNA polymerase lambda [Cricetulus griseus]
Length = 568
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 166/543 (30%), Positives = 260/543 (47%), Gaps = 50/543 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL----- 70
+ +R ++ G+ R +++ ++++ G + + VTH++ MD E L
Sbjct: 40 LSSLRAHIIPTGIGRARAELFEKQIIHHGGQICSAQAPGVTHIVVDENMDCERALRLLRL 99
Query: 71 -----QQSVIRYQWLEDSLRLGEK-------VSEDLYRIKLDPEGENIADRVLSQIQGNG 118
+++ WL SL L E+ S + + LD N AD +
Sbjct: 100 PQLPPSAQLVKSTWL--SLCLQERRLIDTAGFSVCIPKSSLDQPQPNKADESTQEAVSRT 157
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS 178
S + + E A+ D ET+ E P +SS L +S +
Sbjct: 158 TLSPSPPHTRAASPPAKAEKAPRIPAQLGSDDETSD-EEGPQ--VSSADLEALISGHYPA 214
Query: 179 PDFSSHHITDPS-------LLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSYY 226
P DP + P + N++ITE L Y G+ R+ Y
Sbjct: 215 P-LEEDGGPDPVPEALEKWVCAQPSSQKATNYNQHITEKLEVLAKAYSVQGDKWRALGYA 273
Query: 227 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 286
KAI ++ + S + G+PGIGK M + I EI+ +G L KL+H + V + LF
Sbjct: 274 KAINALKSFHKPVSSYQEACGIPGIGKRMAEKIVEILESGHLRKLDHI--SDSVPVLELF 331
Query: 287 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
+WG G TAQ Y +G R L+D+++ DSLT Q +GLK++DD R+PR E +E+
Sbjct: 332 SNIWGAGTKTAQMWYHQGFRNLEDIRSLDSLTTQQAIGLKHYDDFLERMPREEAADIEKT 391
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 406
++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL
Sbjct: 392 VRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLT 451
Query: 407 EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLN 465
+DL+ +H E G Y G+C PG + RH R+D V P +A L+ +TG+ N
Sbjct: 452 DDLV--SHEENGQQ---QKYLGVCRLPGPKQRHRRLDIIVVPYSEFACALLYFTGSAHFN 506
Query: 466 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPH 523
R +R LA++KG L + L A + QGV+ L TEK+VF LG P+ EP
Sbjct: 507 RSMRALAKTKGMSLSEHALSAAVVRN--SQGVKVGPGRVLPTPTEKDVFRLLGLPYREPA 564
Query: 524 ERN 526
ER+
Sbjct: 565 ERD 567
>gi|311705747|gb|ADQ01139.1| DNA polymerase lambda [Saimiri sciureus]
Length = 575
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 165/548 (30%), Positives = 267/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ---- 71
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLGL 100
Query: 72 ------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SSD 123
+++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPCRYLDQPQPSKTEPDSSI 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ ++ + QA+ D ET+ E S E+
Sbjct: 154 PSGTHEALLQTALFPPPSPTRPLSPPQKAKEAPNTQAQPISDDETSDGEETQVSAADLEA 213
Query: 168 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 219
L + S D + + D + +P + N +ITE L Y G+
Sbjct: 214 LISGHYPTSIEGDCEPRLAPEVLDKWVCAHPSSQKVTNHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK+++D R+PR E
Sbjct: 332 VPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S+ + L
Sbjct: 392 AAEIEQTVQKAAQAFNPRLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + V L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|431838887|gb|ELK00816.1| DNA polymerase lambda [Pteropus alecto]
Length = 575
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 165/551 (29%), Positives = 266/551 (48%), Gaps = 60/551 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ +MD E L+
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIVQYGGQICPAQDSGVTHIVVDESMDCERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGE 125
+++ WL SL L E+ D + I +R L Q Q + +D +
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRYLDQPQ---LSKADQD 150
Query: 126 S-----SHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMS 164
S +H +K++ E+ QA+ D ET+ E S
Sbjct: 151 SFPPPGTHEGLLKTALSPPPPPTRPVSPPQRAEEASSTQAQPSSDDETSDGEETQVSAAD 210
Query: 165 SESLTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL 216
E+L + S +P+ + + N +ITE L Y
Sbjct: 211 LEALISGCYPTPLEGDGEPSPAPEGLEKWVCAQPSTQKATNHNPHITEKLEVLAKAYSVQ 270
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 271 GDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI-- 328
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
+ V + LF +WG G TAQ Y +G R+L+D++N+ SLT Q +GLK++DD + R+P
Sbjct: 329 SDSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQASLTAQQAIGLKHYDDFRERMP 388
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
R E ++E+ ++++ + P ++ + GSYRRG+A+CGD+DV+I HPD +SH+G S+ +
Sbjct: 389 REEATEIEQTVRESAQAFNPGLLCVACGSYRRGRATCGDVDVLITHPDGRSHQGIFSRLL 448
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L
Sbjct: 449 DSLRQRGFLTDDLV--SQEENGQQ---QKYLGVCQLPGPGRRHRRLDIIVVPYSEFACAL 503
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+ +TG+ NR +R LA++KG L + L A V + L TEK+VF L
Sbjct: 504 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRDTRGLRVGSGQVLPTPTEKDVFRLL 563
Query: 516 GFPWLEPHERN 526
G P+ EP ER+
Sbjct: 564 GLPYREPAERD 574
>gi|403259667|ref|XP_003922326.1| PREDICTED: DNA polymerase lambda isoform 1 [Saimiri boliviensis
boliviensis]
gi|403259669|ref|XP_003922327.1| PREDICTED: DNA polymerase lambda isoform 2 [Saimiri boliviensis
boliviensis]
gi|403259671|ref|XP_003922328.1| PREDICTED: DNA polymerase lambda isoform 3 [Saimiri boliviensis
boliviensis]
Length = 575
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 165/548 (30%), Positives = 267/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ---- 71
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLGL 100
Query: 72 ------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SSD 123
+++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPCRYLDQPQPSKTEPDSSI 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ ++ + QA+ D ET+ E S E+
Sbjct: 154 PSGTHEALLQTALFPPPSPTRPLSPPQKAKEAPNTQAQPISDDETSDGEETQVSAADLEA 213
Query: 168 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 219
L + S D + + D + +P + N +ITE L Y G+
Sbjct: 214 LISGHYPTSIEGDCEPRLAPEVLDKWVCAHPSSQKVTNHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKVVEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK+++D R+PR E
Sbjct: 332 VPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S+ + L
Sbjct: 392 AAEIEQTVQKAAQAFNPRLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + V L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|260817611|ref|XP_002603679.1| hypothetical protein BRAFLDRAFT_235602 [Branchiostoma floridae]
gi|229289001|gb|EEN59690.1| hypothetical protein BRAFLDRAFT_235602 [Branchiostoma floridae]
Length = 510
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 160/530 (30%), Positives = 261/530 (49%), Gaps = 46/530 (8%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEAL--------- 69
+R F++ G+ R+ I+++++ + G + ++S +H++ M+ + L
Sbjct: 1 VRAFILPAGLGKARMDIFKRQIPRFGGDLHGQISSNTSHIVVDDNMEYDRLCRILKVEKP 60
Query: 70 -LQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSH 128
+ SV+ W+ D + + D Y IK+ ++ D S + S
Sbjct: 61 PVHASVVHANWVSDCIESRTLLGIDEYTIKVP---ASMDDSWTSHSDWPASCLSVPLIGL 117
Query: 129 RKKIKSSTEDVEHFQAE--SKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 186
+ D + F A + + S+ P SP L N + +S +
Sbjct: 118 NFQKFYHICDNQKFNAWLLRRHNQHEMGPSDWPTSPGYMIILNNDRGKWVCAEPSTSKGV 177
Query: 187 TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES----- 241
+ NK+IT+ F L Y+ + R+ SY KAI ++++ P I S
Sbjct: 178 ----------NYNKHITDKFQLLAKAYKNTSDQWRALSYTKAIAILQRHPKPITSWEVRH 227
Query: 242 ----ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
++ LPG+G+ + D I E+V +G L KL+H + + ++LF +VWG G TA
Sbjct: 228 CCTFLEEAHSLPGVGQRLADKIWEVVESGHLRKLDHLGPEHEA--LNLFNDVWGAGAKTA 285
Query: 298 QKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 357
Q+ ++G RTLDDL+ + LT Q++GLK++DD R+PR E ++ER +++ E + P+
Sbjct: 286 QQWLQQGLRTLDDLRTKAKLTRQQQIGLKHYDDFLDRMPREEAAEIERTVREMAESINPD 345
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
++ + GSYRRGK +CGD+DV+I HPD KSHKG K + LKE FL +DL+ T +
Sbjct: 346 LMAMACGSYRRGKLNCGDVDVLITHPDGKSHKGIFQKVLNGLKETGFLTDDLV--TQEDN 403
Query: 418 GTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
G Y G+C PG +H R+D V P +A L+ +TG+ NR +R LA KG
Sbjct: 404 GEQK---KYLGVCRLPGEGRKHRRLDIIVIPYSEFACALMYFTGSAHFNRSMRALAIKKG 460
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L GK+ + T L TE++VF LG + PHER+
Sbjct: 461 MSLSEHSLNTGVI-RKGKEKIFGGTPLPCQTEEDVFRHLGLDYRPPHERD 509
>gi|390473089|ref|XP_003734558.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase lambda [Callithrix
jacchus]
Length = 575
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 167/548 (30%), Positives = 265/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SSD 123
+++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSSI 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ ++ + QA+ D ET+ E S E+
Sbjct: 154 PSGAHEALLQTALSPPPSPTRPVSPPQKAKEAPNTQAQPISDDETSDGEETQVSAADLEA 213
Query: 168 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 219
L + S D + + D + P + N +ITE L Y G+
Sbjct: 214 LISGHYPTSIEGDCEPRLAPEVLDKWVCAQPSSQKVTNHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ + L LEH +
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESVHLRNLEHI--SDS 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK++DD R+PR E
Sbjct: 332 VPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYDDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + P ++ + GSYRRGKA+CGD+DV+I HPD +SHKG S+ + L
Sbjct: 392 ATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDVLITHPDGRSHKGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + V L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALTTAVVRNPQGCKVGPGQVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|194041875|ref|XP_001926893.1| PREDICTED: DNA polymerase lambda [Sus scrofa]
Length = 575
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 168/548 (30%), Positives = 265/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 41 LSSVRAHVVPTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ----GNGNTS 121
+++ WL SL L E+ D + I +R L Q Q GN +++
Sbjct: 101 PRLPPGAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPERYLDQAQLSKAGNDSST 153
Query: 122 SDG--ESSHRKKIK---------SSTEDVEHF---QAESKGDVETNALSEAPNSPMSSES 167
S G E+ R + S +E E F QA+ D +T+ E S E+
Sbjct: 154 SPGARETPLRTALSPPSPPTRPVSPSERTEEFASIQAQPGSDGDTSDGEETQVSAADLEA 213
Query: 168 LTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 219
L + S +P + + N +ITE L Y G+
Sbjct: 214 LISGRYPTPLEEDGEPSPAPKGLDKWVCAQPSSQKATNHNPHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACAIPGIGKRMAEKILEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y +G R+L+D++N+ SLT Q +GLK++ D R+PR E
Sbjct: 332 VPVLQLFSNIWGAGTKTAQLWYHQGFRSLEDIRNQASLTTQQAIGLKHYHDFLDRMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +++A + P ++ + GSYRRG+A+CGD+DV++ HPD +SH+G S+ + L
Sbjct: 392 ASEIEQTVREAAQAFNPGLLCVACGSYRRGRATCGDVDVLLTHPDGRSHQGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + + G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQRGFLTDDLV--SQEQHGQQ---QKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A V L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRDAHGLKVGLGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|410976013|ref|XP_003994420.1| PREDICTED: DNA polymerase lambda [Felis catus]
Length = 609
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 166/566 (29%), Positives = 262/566 (46%), Gaps = 90/566 (15%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+
Sbjct: 40 LSSLRAHVVPSGIGRARAELFEKQIIQHGGQICTAQAPGVTHIVVDEGMDCERALRLLRL 99
Query: 73 -------SVIRYQWLEDSLRLGEK----------------------------------VS 91
+++ WL SL L E+
Sbjct: 100 PRLPQGAQLVKSTWL--SLCLQERRLVDTAGFSIYIPNRYPDQPHVSKADQDFSAPPGAH 157
Query: 92 EDLYRIKLDPEGE-----NIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE-----H 141
E L R L P + R + SD E+S ++ + S D+E H
Sbjct: 158 EALLRTALSPPSPPTRPVSPPQRAEEALSTQAQPGSDDETSDGEENQVSAADLEALISGH 217
Query: 142 FQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKN 201
+ +GD E S AP E L + +S ++H N +
Sbjct: 218 YPTPLEGDDEP---SPAP------EGLDKWVCAQPSSQKTTNH--------------NPH 254
Query: 202 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQE 261
ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M + I E
Sbjct: 255 ITEKLEVLAKAYNVQGDKWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIVE 314
Query: 262 IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ 321
I+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++++ SLT Q
Sbjct: 315 ILESGHLRKLDHI--SESVPVLELFSNIWGAGAKTAQMWYQQGFRTLEDIRSQASLTTQQ 372
Query: 322 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 381
+GLK++DD RIPR E ++E+ ++++ + P ++ + GSYRRGKA+CGD+DV++
Sbjct: 373 TIGLKHYDDFLERIPREEAAEIEQTVRESAQAFTPGLLCVACGSYRRGKATCGDVDVLLT 432
Query: 382 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-R 440
HPD +SH+G ++ + L++ FL +DL+ + E G Y G+C PG RH R
Sbjct: 433 HPDGRSHQGVFNRLLDSLRQQGFLTDDLV--SQEENGQQ---QKYLGVCQLPGPGRRHRR 487
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
+D V P +A L+ +TG+ NR +R LA++K L + L A + V
Sbjct: 488 LDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKSMSLSEHALSTAVVRDSRGRKVGPG 547
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 548 RVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|311705725|gb|ADQ01128.1| DNA polymerase lambda [Hylobates agilis]
Length = 574
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 215/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + P
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNP 407
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 465
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 466 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 522
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 523 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|311705749|gb|ADQ01140.1| DNA polymerase lambda [Miopithecus talapoin]
Length = 574
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 167/547 (30%), Positives = 266/547 (48%), Gaps = 53/547 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSSD 123
+++ WL SL L E+ D+ R + I R L Q Q + +S
Sbjct: 101 PRLPPGAQLVKSAWL--SLCLQERRLVDVARFSI-----FIPSRYLDQSQPSKAEQDASL 153
Query: 124 GESSHRKKIKS---------------STEDVEHFQAESKGDVETNALSEAPNSPMSSESL 168
+H +++ T++ + QA+ D E + E S E+L
Sbjct: 154 PPGTHEALLQTVLPPPPPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEAL 213
Query: 169 TNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDR 220
+ AS D + + D + P + N +ITE L Y G+
Sbjct: 214 ISGYYPASLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDKW 273
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V
Sbjct: 274 RALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESV 331
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
+ LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 332 PVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEA 391
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L+
Sbjct: 392 TEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLR 451
Query: 401 EMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWT 459
+ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +T
Sbjct: 452 QQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFT 506
Query: 460 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 519
G+ NR +R LA++KG L + L A + + L TEK+VF LG P+
Sbjct: 507 GSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPY 566
Query: 520 LEPHERN 526
EP ER+
Sbjct: 567 REPAERD 573
>gi|311705735|gb|ADQ01133.1| DNA polymerase lambda [Colobus guereza]
Length = 575
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 215/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + ST D+E H+ +GD E P + + + A
Sbjct: 194 SDDEASDGEETQVSTADLEALISGHYPTSLEGDCE----------PSPAPVVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLDVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 467 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 523
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 524 GMSLSEHALSTAVVRNTHGCKVAPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|355712671|gb|AES04427.1| polymerase , lambda [Mustela putorius furo]
Length = 575
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 160/548 (29%), Positives = 260/548 (47%), Gaps = 53/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++ Q G + + VTH++ MD E +L+
Sbjct: 41 LSSLRAHVVPSGIGRARAELFEKQITQYGGQICAAQAPGVTHIVVDEGMDCERVLRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGE 125
+++ WL L+ V + I + P + LS+ + + +
Sbjct: 101 PQLPQGAQLVKSTWLSLCLQEKRLVDTAGFNIYI-PNSRYLDQPQLSKADQDSSVPPGAQ 159
Query: 126 SSHRKKIKSS-------------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTL 172
+ + S TE+ QA+ D ET+ E S E+L +
Sbjct: 160 EAVLRTALSPPRPPTRPVSPPWRTEEAPSTQAQPDCDDETSDGEETQVSAADLEALISGH 219
Query: 173 STASASPD-------------FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 219
+ S D + + ++ YNP +ITE L Y G+
Sbjct: 220 CSPSLEGDAEPIPAPKGLDKWVCAQPSSQKAVNYNP-----HITEKLEVLAKAYSVQGDK 274
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 275 WRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIVEILESGHLRKLDHI--SES 332
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G RTL+D++++ SLT Q +GLK+++D RIPR E
Sbjct: 333 VPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRDQASLTSQQAIGLKHYEDFLERIPREE 392
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +++A + P ++ + GSYRRGKASCGD+DV++ HPD +SH+G + + L
Sbjct: 393 ATEIEQTVREAAQAFSPGLLCVACGSYRRGKASCGDVDVLLTHPDGRSHQGIFNPLLDSL 452
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
+ FL +DL+ + E G Y G+C PG RH R+D + P +A L+ +
Sbjct: 453 RRQGFLTDDLV--SQEENGQQ---QKYLGVCQLPGPGRRHRRLDIIIVPYSEFACALLYF 507
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L + V L TEK+VF LG P
Sbjct: 508 TGSAHFNRSMRALAKTKGMSLSEHALSTSVVRDTHGLKVGPGRVLPTPTEKDVFRLLGLP 567
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 568 YREPAERD 575
>gi|348578599|ref|XP_003475070.1| PREDICTED: DNA polymerase lambda-like isoform 1 [Cavia porcellus]
Length = 574
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 165/557 (29%), Positives = 264/557 (47%), Gaps = 73/557 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ ++++Q G + + VTH++ AMD E L+
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIIQHGGQICPAQAPGVTHIVVDEAMDCERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLR------------------LGEKVSEDLYRIKLDPEG---- 103
+++ WL L+ L + S + P
Sbjct: 101 PQLPPGAQLVKSTWLSLCLQERRLVDTAGFCIFIPSRYLNQSQSSQTDQDSSAPSASPGT 160
Query: 104 -ENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAE----SKGDVETNALSEA 158
E + + G+ + E + I+ S++D E +E S D+E
Sbjct: 161 CEVLLKTAVCPPSGDASLPQKAEEASSTHIQPSSDD-ETSDSEGPQVSAADLEALISGHY 219
Query: 159 PNSP-------MSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLIN 211
P +P ++E+L + S+S ++H N +ITE L N
Sbjct: 220 PATPEENSGPGPATETLDKWVCAQSSSQKVTNH--------------NLHITEKLEVLAN 265
Query: 212 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 271
Y G+ R+ Y KAI ++ + S + +PG+GK M + IQEI+ +G L KL
Sbjct: 266 AYNIQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGKRMAEKIQEILESGHLRKL 325
Query: 272 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDI 331
+H E V + LF +WG G TAQ Y +G R+L+D++N SLT Q +GLK++ D
Sbjct: 326 DHI--SESVPVLQLFSSIWGAGTKTAQMWYHQGFRSLEDIRNLASLTAQQAIGLKHYSDF 383
Query: 332 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 391
R+PR E ++E+ ++ A P ++ + GSYRRGK +CGD+DV+I HPD +SH+G
Sbjct: 384 LERMPRDEAAEIEQTVRAAAYTCNPGLLCVACGSYRRGKPTCGDVDVLITHPDGRSHRGV 443
Query: 392 LSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT-YFGLCTYPGRELRH-RIDFKVYPRD 449
S+ + L++ FL +DL+ S+E D+G Y G+C PG RH R+D V P
Sbjct: 444 FSRLLDGLRQQGFLTDDLV----SQE--DNGQQQKYLGVCRLPGPRRRHRRLDIIVVPYG 497
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 509
+A L+ +TG+ NR +R LA++KG L + L G + V L TEK
Sbjct: 498 EFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTVIRNPRGLK-VGPGQVLPTPTEK 556
Query: 510 EVFDFLGFPWLEPHERN 526
+VF LG P+ EP ER+
Sbjct: 557 DVFRLLGLPYREPAERD 573
>gi|403259675|ref|XP_003922330.1| PREDICTED: DNA polymerase lambda isoform 5 [Saimiri boliviensis
boliviensis]
Length = 487
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E ++ E L +
Sbjct: 106 SDDETSDGEETQVSAADLEALISGHYPTSIEGDCEPR---------LAPEVLDKWVCAHP 156
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+S ++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 157 SSQKVTNH--------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + + EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGSKT 260
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L++++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + P
Sbjct: 261 AQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREEAAEIEQTVQKAAQAFNP 320
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 321 RLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLV--SQEE 378
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 379 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 435
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 436 GMSLSEHALSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|311705745|gb|ADQ01138.1| DNA polymerase lambda [Symphalangus syndactylus]
Length = 574
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D RIPR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERIPREEATEIEQTVQKAAQAFNS 407
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 465
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 466 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 522
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 523 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|426365961|ref|XP_004050034.1| PREDICTED: DNA polymerase lambda isoform 4 [Gorilla gorilla
gorilla]
Length = 487
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D+ ++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 378
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 379 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 435
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V + L TEK+VF LG P+ EP ER+
Sbjct: 436 GMSLSEHALSTAVVRNTHGCKVGSGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|297687237|ref|XP_002821126.1| PREDICTED: DNA polymerase lambda isoform 1 [Pongo abelii]
gi|395741929|ref|XP_002821128.2| PREDICTED: DNA polymerase lambda isoform 3 [Pongo abelii]
gi|395741932|ref|XP_003777665.1| PREDICTED: DNA polymerase lambda [Pongo abelii]
Length = 568
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/549 (30%), Positives = 264/549 (48%), Gaps = 63/549 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ ++++Q G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEEQIIQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGE 125
+++ WL SL L E+ D+ + I R L Q Q + +
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPS-------K 146
Query: 126 SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASPDF- 181
+ I T + A S A EAPN+ P+S + ++ T ++ D
Sbjct: 147 AEQDASIPPGTHEALLQTALSPPPPPQKA-KEAPNTQAQPISDDEASDGEETQVSAADLE 205
Query: 182 ---SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRALGE 218
S H+ T P++L + N +ITE L Y G+
Sbjct: 206 ALISGHYPTSLEGDCEPSPAPAVLGKWVCAQPSSQKATNHNLHITEKLEVLAKAYGVQGD 265
Query: 219 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 278
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 266 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 323
Query: 279 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 338
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR
Sbjct: 324 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPRE 383
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 384 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 443
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIA 457
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+
Sbjct: 444 LRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLY 498
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
+TG+ NR +R LA++KG L + L A + V L TEK+VF LG
Sbjct: 499 FTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGL 558
Query: 518 PWLEPHERN 526
P+ EP ER+
Sbjct: 559 PYREPAERD 567
>gi|311705741|gb|ADQ01136.1| DNA polymerase lambda [Trachypithecus francoisi]
Length = 574
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + + + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPVVLDKWVCAQ 242
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 347
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 407
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 465
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 466 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 522
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 523 GMSLSEHALSTAVVRNTHGCKVGPGQVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|397510308|ref|XP_003825540.1| PREDICTED: DNA polymerase lambda isoform 1 [Pan paniscus]
gi|397510310|ref|XP_003825541.1| PREDICTED: DNA polymerase lambda isoform 2 [Pan paniscus]
gi|397510312|ref|XP_003825542.1| PREDICTED: DNA polymerase lambda isoform 3 [Pan paniscus]
Length = 575
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 166/551 (30%), Positives = 267/551 (48%), Gaps = 60/551 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSSD 123
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDASI 153
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASPD 180
+H ++++ + ++ EAPN+ P+S + ++ T ++ D
Sbjct: 154 PPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAAD 210
Query: 181 F----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRAL 216
S H+ T P++L + N +ITE L Y
Sbjct: 211 LEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQ 270
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 271 GDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI-- 328
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+P
Sbjct: 329 SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMP 388
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
R E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 389 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLL 448
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L
Sbjct: 449 DSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACAL 503
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+ +TG+ NR +R LA++KG L + L A + V L TEK+VF L
Sbjct: 504 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLL 563
Query: 516 GFPWLEPHERN 526
G P+ EP ER+
Sbjct: 564 GLPYREPAERD 574
>gi|332212625|ref|XP_003255420.1| PREDICTED: DNA polymerase lambda isoform 4 [Nomascus leucogenys]
Length = 487
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 155
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 260
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 378
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 379 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 435
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 436 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|311705755|gb|ADQ01143.1| DNA polymerase lambda [Cercopithecus wolfi]
Length = 575
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 166/548 (30%), Positives = 266/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVEGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSSD 123
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PRLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDASL 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ T++ + QA+ D E + E S E+
Sbjct: 154 PPGTHEALLQTALPLPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEA 213
Query: 168 LTNTLSTASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 219
L + AS D + + D + P + N +ITE L Y G+
Sbjct: 214 LISGYYPASLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 332 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L
Sbjct: 392 ATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + + L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|311705729|gb|ADQ01130.1| DNA polymerase lambda [Pongo pygmaeus]
Length = 568
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 164/541 (30%), Positives = 263/541 (48%), Gaps = 47/541 (8%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ ++++Q G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEEQIIQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSSD 123
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKAEQDASI 153
Query: 124 GESSHRKKIKSS---------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLST 174
+H ++++ ++ + QA+ D E + E S E+L +
Sbjct: 154 PPGTHEALLQTALSPPPPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHYP 213
Query: 175 ASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSYY 226
S D + + D + P + N +ITE L Y G+ R+ Y
Sbjct: 214 TSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYGVQGDKWRALGYA 273
Query: 227 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 286
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + LF
Sbjct: 274 KAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELF 331
Query: 287 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
+WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+
Sbjct: 332 SNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQT 391
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 406
+QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL
Sbjct: 392 VQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLT 451
Query: 407 EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLN 465
+DL+ + E G Y G+C PG RH R+D V P +A L+ +TG+ N
Sbjct: 452 DDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFN 506
Query: 466 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
R +R LA++KG L + L A + V L TEK+VF LG P+ EP ER
Sbjct: 507 RSMRALAKTKGMSLSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAER 566
Query: 526 N 526
+
Sbjct: 567 D 567
>gi|432113053|gb|ELK35631.1| DNA polymerase lambda [Myotis davidii]
Length = 573
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 160/547 (29%), Positives = 262/547 (47%), Gaps = 52/547 (9%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ-- 72
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 40 CLSSLRAHVVPAGIGRARAELFEKQIVQHGGQIYSAQAPGVTHIVVDDGMDCERALRLLR 99
Query: 73 --------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 124
+++ WL SL L E+ D + I +R L Q Q +
Sbjct: 100 LPRLPPGAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRFLDQPQLSKADQDSP 152
Query: 125 ESSHRKKIKSST----------------EDVEHFQAESKGDVETNALSEAPNSPMSSESL 168
+ ++++ E+ + QA+ D +T+ E P S E+L
Sbjct: 153 PGACEALLRTTPSPPPTPPRPVSPPQRIEEAPNTQAQPGSDDDTSDGEETPVSTADLEAL 212
Query: 169 TNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDR 220
+ S +P+ + + N +ITE L Y G+
Sbjct: 213 ISGRYPIPPEGDGDPSPAPEGLKKWVCAQPSSQKATNHNTHITEKLEVLAKAYSVQGDKW 272
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H V
Sbjct: 273 RALGYDKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI--SHSV 330
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
+ LF +WG G TAQ Y++G R+L+D++N+ SLT Q +GLK++DD R+PR E
Sbjct: 331 PVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRNQASLTTQQAIGLKHYDDFLERMPREEA 390
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
++E+ ++++ + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L+
Sbjct: 391 AEIEQTVRESAQAFSPGLLCVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSRLLDSLR 450
Query: 401 EMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWT 459
+ FL +DL+ + E G Y G+C PG RH R+D + P +A L+ +T
Sbjct: 451 QRGFLTDDLV--SQEENGQQQ---KYLGVCQLPGPGRRHRRLDIIIVPYSEFACALLYFT 505
Query: 460 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 519
G+ NR +R LA++KG L + L A V + L TEK+VF LG P+
Sbjct: 506 GSAHFNRSMRALAKTKGMSLSEHALSAAVVRDTRGLKVGSGRVLPTPTEKDVFRLLGLPY 565
Query: 520 LEPHERN 526
EP ER+
Sbjct: 566 REPAERD 572
>gi|311705731|gb|ADQ01131.1| DNA polymerase lambda [Pongo abelii]
Length = 568
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 187 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 236
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 237 PSSQKATNH-------------NLHITEKLEVLAKAYGVQGDKWRALGYAKAINALKSFH 283
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 284 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 341
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 342 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 401
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 402 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 459
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 460 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 516
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 517 GMSLSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 567
>gi|426365955|ref|XP_004050031.1| PREDICTED: DNA polymerase lambda isoform 1 [Gorilla gorilla
gorilla]
gi|426365957|ref|XP_004050032.1| PREDICTED: DNA polymerase lambda isoform 2 [Gorilla gorilla
gorilla]
gi|311705737|gb|ADQ01134.1| DNA polymerase lambda [Gorilla gorilla]
Length = 575
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 166/551 (30%), Positives = 267/551 (48%), Gaps = 60/551 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSSD 123
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKAEQDASI 153
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASPD 180
+H ++++ + ++ EAPN+ P+S + ++ T ++ D
Sbjct: 154 PPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAAD 210
Query: 181 F----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRAL 216
S H+ T P++L + N +ITE L Y
Sbjct: 211 LEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQ 270
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 271 GDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI-- 328
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
E V + LF +WG G TAQ Y++G R+L+D+ ++ SLT Q +GLK++ D R+P
Sbjct: 329 SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERMP 388
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
R E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 389 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLL 448
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L
Sbjct: 449 DSLRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACAL 503
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+ +TG+ NR +R LA++KG L + L A + V + L TEK+VF L
Sbjct: 504 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGSGRVLPTPTEKDVFRLL 563
Query: 516 GFPWLEPHERN 526
G P+ EP ER+
Sbjct: 564 GLPYREPAERD 574
>gi|343959642|dbj|BAK63678.1| DNA polymerase lambda [Pan troglodytes]
Length = 575
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 165/551 (29%), Positives = 268/551 (48%), Gaps = 60/551 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSSD 123
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDASI 153
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASPD 180
+H ++++ + ++ EAPN+ P+S + ++ T ++ D
Sbjct: 154 PPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAAD 210
Query: 181 F----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRAL 216
S H+ T P++L + N +ITE L Y
Sbjct: 211 LEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQ 270
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 271 GDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI-- 328
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
+ V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D+ R+P
Sbjct: 329 SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDLLERMP 388
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
R E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 389 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLL 448
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L
Sbjct: 449 DSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACAL 503
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+ +TG+ NR +R LA++KG L + L A + V L TEK+VF L
Sbjct: 504 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLL 563
Query: 516 GFPWLEPHERN 526
G P+ EP ER+
Sbjct: 564 GLPYREPAERD 574
>gi|297687239|ref|XP_002821127.1| PREDICTED: DNA polymerase lambda isoform 2 [Pongo abelii]
Length = 480
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 213/411 (51%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ A
Sbjct: 99 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLGKWVCAQ 148
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 149 PSSQKATNH-------------NLHITEKLEVLAKAYGVQGDKWRALGYAKAINALKSFH 195
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 196 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 253
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 254 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 313
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 314 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 371
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 372 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 428
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 429 GMSLSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 479
>gi|302766281|ref|XP_002966561.1| hypothetical protein SELMODRAFT_86291 [Selaginella moellendorffii]
gi|300165981|gb|EFJ32588.1| hypothetical protein SELMODRAFT_86291 [Selaginella moellendorffii]
Length = 310
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 187/313 (59%), Gaps = 12/313 (3%)
Query: 215 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
LG+ RS Y K + + LP+K+ S +Q++ + G+GKS+ ++EI+ TG+L KL++
Sbjct: 8 VLGDQWRSLIYRKTVNKLRSLPYKVTSVEQIREMYGVGKSLVKMVKEILGTGQLQKLDNL 67
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 334
+ +V I + G VWGIG A++LY+KG RT+ DL+N SLT QR+G+KY+DDI R
Sbjct: 68 K--AQVGEIQVLGSVWGIGAIQARELYKKGFRTVKDLENYSSLTSMQRMGVKYYDDINLR 125
Query: 335 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 394
IPR EV E+ ++ E + P + GSYRRGK +CGD+D++I HPD
Sbjct: 126 IPRDEVADTEKFVRGVVETLAPGAWVNAAGSYRRGKPTCGDVDILITHPDGSRFTSLRCC 185
Query: 395 YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
+ +DL+ GT D + G+ + G+ R RID KVYPR +YAF
Sbjct: 186 THSSHLHLLCSHQDLLARL---GGTQP--DMFMGIFHFQGKPYR-RIDIKVYPRHVYAFA 239
Query: 455 LIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 513
L+A+TGNDVLNR++R LA K GY+L D GLF K+ V S+ +TE+E+F+
Sbjct: 240 LLAFTGNDVLNRKIRFLARVKFGYKLSDQGLFIR---ESKKKDVWFTESIPCETEREIFE 296
Query: 514 FLGFPWLEPHERN 526
LG + EPH+RN
Sbjct: 297 KLGLDYPEPHDRN 309
>gi|311705753|gb|ADQ01142.1| DNA polymerase lambda [Nomascus leucogenys]
Length = 574
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 407
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 465
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 466 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 522
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 523 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|75075271|sp|Q4R380.1|DPOLL_MACFA RecName: Full=DNA polymerase lambda; Short=Pol Lambda
gi|67972190|dbj|BAE02437.1| unnamed protein product [Macaca fascicularis]
Length = 575
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 215/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ A +GD + P + + + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPASLEGDCD----------PSPAPVVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 467 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 523
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + + L TEK+VF LG P+ EP ER+
Sbjct: 524 GMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|332212619|ref|XP_003255417.1| PREDICTED: DNA polymerase lambda isoform 1 [Nomascus leucogenys]
gi|332212621|ref|XP_003255418.1| PREDICTED: DNA polymerase lambda isoform 2 [Nomascus leucogenys]
Length = 574
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 407
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 465
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 466 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 522
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 523 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|10433887|dbj|BAB14050.1| unnamed protein product [Homo sapiens]
gi|119570146|gb|EAW49761.1| polymerase (DNA directed), lambda, isoform CRA_e [Homo sapiens]
Length = 487
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 378
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 379 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 435
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 436 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|388453987|ref|NP_001253835.1| DNA polymerase lambda [Macaca mulatta]
gi|311705733|gb|ADQ01132.1| DNA polymerase lambda [Macaca fascicularis]
gi|355562721|gb|EHH19315.1| hypothetical protein EGK_19997 [Macaca mulatta]
gi|355783042|gb|EHH64963.1| hypothetical protein EGM_18298 [Macaca fascicularis]
gi|384946496|gb|AFI36853.1| DNA polymerase lambda isoform a [Macaca mulatta]
gi|384946498|gb|AFI36854.1| DNA polymerase lambda isoform a [Macaca mulatta]
Length = 575
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 166/548 (30%), Positives = 266/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSSD 123
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PRLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDASL 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ T++ + QA+ D E + E S E+
Sbjct: 154 PPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEA 213
Query: 168 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 219
L + AS D + + D + P + N +ITE L Y G+
Sbjct: 214 LISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 332 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L
Sbjct: 392 ATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + + L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|10732732|gb|AAG22519.1|AF283478_1 DNA polymerase beta2 [Homo sapiens]
Length = 575
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 467 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 523
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 524 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|7019491|ref|NP_037406.1| DNA polymerase lambda isoform a [Homo sapiens]
gi|291463287|ref|NP_001167555.1| DNA polymerase lambda isoform a [Homo sapiens]
gi|17367126|sp|Q9UGP5.1|DPOLL_HUMAN RecName: Full=DNA polymerase lambda; Short=Pol Lambda; AltName:
Full=DNA polymerase beta-2; Short=Pol beta2; AltName:
Full=DNA polymerase kappa
gi|6746387|gb|AAF27541.1|AF161019_1 DNA polymerase lambda [Homo sapiens]
gi|21780368|gb|AAM77696.1|AF525924_1 polymerase (DNA directed), lambda [Homo sapiens]
gi|6687796|emb|CAB65074.1| DNA polymerase lambda [Homo sapiens]
gi|119570144|gb|EAW49759.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|119570151|gb|EAW49766.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|119570153|gb|EAW49768.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|168275706|dbj|BAG10573.1| DNA polymerase lambda [synthetic construct]
Length = 575
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 467 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 523
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 524 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|114632443|ref|XP_001170074.1| PREDICTED: DNA polymerase lambda isoform 13 [Pan troglodytes]
gi|114632449|ref|XP_001170138.1| PREDICTED: DNA polymerase lambda isoform 16 [Pan troglodytes]
gi|410044269|ref|XP_003951782.1| PREDICTED: DNA polymerase lambda [Pan troglodytes]
gi|410219296|gb|JAA06867.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410262932|gb|JAA19432.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410307616|gb|JAA32408.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410354323|gb|JAA43765.1| polymerase (DNA directed), lambda [Pan troglodytes]
Length = 575
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 165/551 (29%), Positives = 267/551 (48%), Gaps = 60/551 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARTELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSSD 123
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDASI 153
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASPD 180
+H ++++ + ++ EAPN+ P+S + ++ T ++ D
Sbjct: 154 PPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAAD 210
Query: 181 F----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRAL 216
S H+ T P++L + N +ITE L Y
Sbjct: 211 LEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQ 270
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 271 GDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI-- 328
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
+ V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+P
Sbjct: 329 SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMP 388
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
R E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 389 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLL 448
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L
Sbjct: 449 DSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACAL 503
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+ +TG+ NR +R LA++KG L + L A + V L TEK+VF L
Sbjct: 504 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLL 563
Query: 516 GFPWLEPHERN 526
G P+ EP ER+
Sbjct: 564 GLPYREPAERD 574
>gi|397510316|ref|XP_003825544.1| PREDICTED: DNA polymerase lambda isoform 5 [Pan paniscus]
Length = 487
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 378
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 379 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 435
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 436 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|444517529|gb|ELV11632.1| DNA polymerase lambda [Tupaia chinensis]
Length = 574
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 219/413 (53%), Gaps = 40/413 (9%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
+D ESS ++ + S D+E H+ +GD E N + EA L +
Sbjct: 193 TDDESSDGEETQVSAADLEALISGHYPTPPEGDAEPNPVPEA---------LDKWVCAQP 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+S ++H N +ITE L YR G+ R+ Y KAI ++
Sbjct: 244 SSQKATNH--------------NAHITEKLEVLAKAYRVQGDQWRALGYAKAINALKSFH 289
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + + EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKVLEILESGHLRKLDHV--SDSVPVLELFSNIWGAGTKT 347
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
A+ Y +G R+L+D++ + +LT Q +GLK++DD R+PR E ++E+ +++A + + P
Sbjct: 348 ARMWYYQGFRSLEDIRTQATLTTQQAIGLKHYDDFLDRMPREEAAEIEQTVREAAQALNP 407
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV++ HPD +SH+G + L++ FL +DL+ +H E
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLVTHPDGRSHQGVFRLLLDSLRQRGFLTDDLV--SHEE 465
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P A L+ +TG+ NR +R LA++K
Sbjct: 466 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYCELACALLYFTGSAHFNRSMRALAKTK 522
Query: 476 GYRLDDTGLFPATYGSGGKQGVR--ARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L +T + +GV+ +L TEK+VF LG P+ EP ER+
Sbjct: 523 GMSLSEHAL--STAVNRNSRGVKLGPGRALPTPTEKDVFSLLGLPYREPAERD 573
>gi|380811840|gb|AFE77795.1| DNA polymerase lambda isoform a [Macaca mulatta]
Length = 575
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ A +GD + P + + + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPASLEGDCD----------PSPAPVVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 467 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 523
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + + L TEK VF LG P+ EP ER+
Sbjct: 524 GMSLSEHALSTAVVRNTHGCKMGPGQVLPTPTEKVVFRLLGLPYREPAERD 574
>gi|344274825|ref|XP_003409215.1| PREDICTED: DNA polymerase lambda isoform 1 [Loxodonta africana]
Length = 575
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 164/571 (28%), Positives = 263/571 (46%), Gaps = 100/571 (17%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ---- 71
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIIQHGGQICPAQASGVTHIVVDEGMDCERALRLLKL 100
Query: 72 ------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ---GNGNTS- 121
+++ WL SL L E+ D + I +R L Q Q N ++S
Sbjct: 101 PQLPTGAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRYLDQPQPSKANQDSST 153
Query: 122 ----------------------------------------SDGESSHRKKIKSSTEDVE- 140
SD E+S ++ + S D+E
Sbjct: 154 PPGPHEALLRTPLSPPPPPTRPVSPFQKAEEAPSIQTQPGSDDETSDGEETQVSAADLEI 213
Query: 141 ----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPP 196
H+ +GD E P + + A S +++H
Sbjct: 214 LISGHYPTPLEGDGE----------PSPTPKALDKWVCAQPSSQKATNH----------- 252
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +ITE L Y G+ R+ Y KAI ++ + S + +PG+GK M
Sbjct: 253 --NLHITEKLEVLAKAYTVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGVGKRMA 310
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
+ + EI+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++++ S
Sbjct: 311 EKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRSQAS 368
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
LT Q +GLKY+ D R+PR E ++++ +Q++ + + P ++ + GSYRRGKA+CGD+
Sbjct: 369 LTTQQAIGLKYYGDFLERMPREEAAEIQQTVQESAQALNPGLLCVACGSYRRGKATCGDV 428
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE 436
DV+I HPD +SH+G S + L++ FL +DL+ + + G Y G+C PG
Sbjct: 429 DVLITHPDGRSHQGIFSHLLDSLRQRGFLTDDLV--SQEQNGQQ---QKYLGVCQLPGPR 483
Query: 437 LRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
RH R+D V P +A L+ +TG+ NR +R LA++KG L + L A
Sbjct: 484 RRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRDTQGL 543
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
V L TEK+VF LG P+ EP ER+
Sbjct: 544 KVGPGWVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|62079061|ref|NP_001014190.1| DNA polymerase lambda [Rattus norvegicus]
gi|81883396|sp|Q5RKI3.1|DPOLL_RAT RecName: Full=DNA polymerase lambda; Short=Pol Lambda
gi|55715673|gb|AAH85841.1| Polymerase (DNA directed), lambda [Rattus norvegicus]
gi|149040271|gb|EDL94309.1| similar to DNA polymerase lambda [Rattus norvegicus]
Length = 573
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/549 (28%), Positives = 257/549 (46%), Gaps = 43/549 (7%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
A D+ G + +R ++ G+ R +++ ++++Q G V + VTH++ MD E
Sbjct: 33 AGDARGWLSSLRAHIMPTGIGRARAELFEKQIIQHGGQVCSAQAPGVTHIVVDEGMDYER 92
Query: 69 LLQQ----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG 118
L+ +++ WL SL L EK D L ++ + S+ +
Sbjct: 93 ALRLLRLPQLPPGAQLVKSAWL--SLCLQEKKLTDTDGFSLSSPKRSLNEPQPSKSGQDA 150
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS 178
+ R + S K + ++ + +S+ +S+A
Sbjct: 151 SAPGTQGVLPRTTLSLSPPCTRAVSPPPKAEKPPKTQTQLSSEDEASDGEGPQVSSADLQ 210
Query: 179 PDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYRALGE 218
S H+ T P P + N +ITE L Y G+
Sbjct: 211 ALISGHYPTPPGEDGGPDPAPEALGKWVCAQPSSQKATNYNLHITEKLEVLAKAYNVQGD 270
Query: 219 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 278
R+ Y KAI ++ + S + +PG+G+ M + + EI+ +G L KL+H +
Sbjct: 271 KWRALGYAKAINALKSFHKPVSSYQEACSIPGVGRRMAEKVMEILESGHLRKLDHI--SD 328
Query: 279 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 338
V + LF +WG G TAQ Y +G R+L+D++ SLT Q +GLK++DD R+PR
Sbjct: 329 SVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRGLASLTAQQAIGLKHYDDFLDRMPRE 388
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
E ++E++++ + + P ++ + GS+RRGK +CGD+DV+I HPD +SH+G S +
Sbjct: 389 EAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGRSHQGIFSPLLDS 448
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIA 457
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+
Sbjct: 449 LRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGAGQRHRRLDIIVVPYSEFACALLY 503
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
+TG+ NR +R LA++KG L + L A + V A L TEK+VF LG
Sbjct: 504 FTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGAGQVLPTPTEKDVFKLLGL 563
Query: 518 PWLEPHERN 526
P+ EP ER+
Sbjct: 564 PYREPAERD 572
>gi|395828239|ref|XP_003787293.1| PREDICTED: DNA polymerase lambda [Otolemur garnettii]
Length = 571
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 165/546 (30%), Positives = 262/546 (47%), Gaps = 54/546 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQS-- 73
+ +R +V G+ R +++++++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHIVPTGIGRARAELFKKQIVQHGGRICPAQDPGVTHIVVDEGMDYERALRLLRL 100
Query: 74 --------VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGE 125
+++ WL SL L E+ D+ + I +R L Q Q N
Sbjct: 101 PQLPLGAHLVKSAWL--SLCLQERRLVDVAGFSI-----FIPNRYLDQPQPNKTEQDSTP 153
Query: 126 SSHRKKIKS--STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSS 183
S H + + S K + +A + + +S+S +STA S
Sbjct: 154 SVHEAVLMTALSPPSTRPVSPPQKAEEAPSAQPQPISDDETSDSEEMRVSTADLEALISG 213
Query: 184 HHIT------DPSLLYNPPDL--------------NKNITEIFGKLINIYRALGEDRRSF 223
H+ T +P+L + D N +ITE L YR G+ R+
Sbjct: 214 HYPTPLEGDREPTLAPDHLDKWVCAQSSSQKATNHNLHITEKLEVLAKAYRVQGDKWRAL 273
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V +
Sbjct: 274 GYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVL 331
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 343
LF +WG G TA Y +G R+L+D++++ SLT Q +GLK++DD R+PR E ++
Sbjct: 332 ELFSNIWGAGTKTALMWYHQGFRSLEDIRSQASLTIQQAIGLKHYDDFLERMPREEAAEI 391
Query: 344 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 403
E+ +++A P ++ + GS+RRGK +CGD+DV+I HPD +SH+G + + L+
Sbjct: 392 EQTVREAAHAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGQSHQGIFTLLLDTLRHQG 451
Query: 404 FLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGND 462
FL +DL+ + E G Y G+C PG RH R+D + P +A L+ +TG+
Sbjct: 452 FLTDDLV--SQEENGQQK---KYLGVCQLPGPGRRHRRLDIIIVPYSEFACALLYFTGSA 506
Query: 463 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWL 520
NR +R LA++KG L + L +T QG + L TEK+VF LG P+
Sbjct: 507 HFNRSMRALAKTKGMSLSEHAL--STDVVRNTQGFKVGPGRVLPTPTEKDVFRLLGLPYR 564
Query: 521 EPHERN 526
EP ER+
Sbjct: 565 EPAERD 570
>gi|402881271|ref|XP_003904197.1| PREDICTED: DNA polymerase lambda isoform 1 [Papio anubis]
gi|402881273|ref|XP_003904198.1| PREDICTED: DNA polymerase lambda isoform 2 [Papio anubis]
gi|311705727|gb|ADQ01129.1| DNA polymerase lambda [Lophocebus albigena]
gi|311705743|gb|ADQ01137.1| DNA polymerase lambda [Papio anubis]
Length = 575
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 165/548 (30%), Positives = 266/548 (48%), Gaps = 54/548 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSSD 123
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PRLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDASL 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H ++++ T++ + QA+ D E + E S E+
Sbjct: 154 PPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEA 213
Query: 168 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 219
L + AS D + + D + P + N +ITE L Y G+
Sbjct: 214 LISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TA+ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 332 VPVLELFSNIWGAGTKTARMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L
Sbjct: 392 ATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
++ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ NR +R LA++KG L + L A + + L TEK+VF LG P
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLP 566
Query: 519 WLEPHERN 526
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|46250018|gb|AAH68529.1| POLL protein [Homo sapiens]
Length = 575
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/411 (34%), Positives = 213/411 (51%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQGACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 467 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 523
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 524 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|114632455|ref|XP_001169987.1| PREDICTED: DNA polymerase lambda isoform 9 [Pan troglodytes]
Length = 487
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 214/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 260
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 378
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 379 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 435
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 436 GMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|402881277|ref|XP_003904200.1| PREDICTED: DNA polymerase lambda isoform 4 [Papio anubis]
Length = 487
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 215/411 (52%), Gaps = 36/411 (8%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ A +GD + P + + + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPASLEGDCD----------PSPAPVVLDKWVCAQ 155
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
A+ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 261 ARMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEE 378
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++K
Sbjct: 379 NGQQ---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTK 435
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L + L A + + L TEK+VF LG P+ EP ER+
Sbjct: 436 GMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|301756144|ref|XP_002913915.1| PREDICTED: DNA polymerase lambda-like isoform 1 [Ailuropoda
melanoleuca]
Length = 575
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 170/550 (30%), Positives = 263/550 (47%), Gaps = 58/550 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+
Sbjct: 41 LSSLRAHIVPSGIGRARAELFEKQIIQHGGQICAAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTS--SD 123
+++ WL SL L EK D G I +R L Q Q + S
Sbjct: 101 PQLPQGAQLVKSAWL--SLCLQEKRLVDTAGF-----GIWIPNRYLDQAQLSKADQDFSA 153
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H + ++ E+ QA+ D ET+ E S E+
Sbjct: 154 PPGAHEAVLMTALSPPRPPTRPVSPPWRIEEAPSTQAQPGYDDETSDGEETQVSAADLEA 213
Query: 168 L-TNTLSTA-------SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 219
L + ST S +P + + N +ITE L Y G+
Sbjct: 214 LISGHYSTPLEEDGEPSPAPKGLDKWVCAQPSSQKAINHNPHITEKLEVLAKAYSVQGDK 273
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 331
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G RTL+D++ + SLT Q +GLK++DD RIPR E
Sbjct: 332 VPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPREE 391
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S + L
Sbjct: 392 ATEIEQTVREAAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSLLLDSL 451
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
+ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 452 RRQGFLTDDLV--SQEENGQQ---QKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYF 506
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLG 516
TG+ NR +R LA++KG L + L +T QG++ L TEK+VF LG
Sbjct: 507 TGSAHFNRSMRALAKTKGMSLSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLG 564
Query: 517 FPWLEPHERN 526
P+ EP ER+
Sbjct: 565 LPYREPAERD 574
>gi|281352050|gb|EFB27634.1| hypothetical protein PANDA_001756 [Ailuropoda melanoleuca]
Length = 537
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 170/550 (30%), Positives = 263/550 (47%), Gaps = 58/550 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQ--- 72
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+
Sbjct: 3 LSSLRAHIVPSGIGRARAELFEKQIIQHGGQICAAQAPGVTHIVVDEGMDCERALRLLRL 62
Query: 73 -------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTS--SD 123
+++ WL SL L EK D G I +R L Q Q + S
Sbjct: 63 PQLPQGAQLVKSAWL--SLCLQEKRLVDTAGF-----GIWIPNRYLDQAQLSKADQDFSA 115
Query: 124 GESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 167
+H + ++ E+ QA+ D ET+ E S E+
Sbjct: 116 PPGAHEAVLMTALSPPRPPTRPVSPPWRIEEAPSTQAQPGYDDETSDGEETQVSAADLEA 175
Query: 168 L-TNTLSTA-------SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 219
L + ST S +P + + N +ITE L Y G+
Sbjct: 176 LISGHYSTPLEEDGEPSPAPKGLDKWVCAQPSSQKAINHNPHITEKLEVLAKAYSVQGDK 235
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 236 WRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 293
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
V + LF +WG G TAQ Y++G RTL+D++ + SLT Q +GLK++DD RIPR E
Sbjct: 294 VPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPREE 353
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S + L
Sbjct: 354 ATEIEQTVREAAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSLLLDSL 413
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAW 458
+ FL +DL+ + E G Y G+C PG RH R+D V P +A L+ +
Sbjct: 414 RRQGFLTDDLV--SQEENGQQ---QKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYF 468
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLG 516
TG+ NR +R LA++KG L + L +T QG++ L TEK+VF LG
Sbjct: 469 TGSAHFNRSMRALAKTKGMSLSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLG 526
Query: 517 FPWLEPHERN 526
P+ EP ER+
Sbjct: 527 LPYREPAERD 536
>gi|60594068|pdb|1XSN|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap And Ddttp
gi|60594072|pdb|1XSP|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With Nicked Dna And Pyrophosphate
gi|149243099|pdb|2PFN|A Chain A, Na In The Active Site Of Dna Polymerase Lambda
gi|149243103|pdb|2PFO|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dupnpp
gi|149243107|pdb|2PFP|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dctp
gi|149243111|pdb|2PFQ|A Chain A, Manganese Promotes Catalysis In A Dna Polymerase
Lambda-Dna Crystal
gi|256599813|pdb|3HW8|A Chain A, Ternary Complex Of Dna Polymerase Lambda Of A Two
Nucleotide Gapped Dna Substrate With A C In The Scrunch
Site
gi|256599817|pdb|3HWT|A Chain A, Ternary Complex Of Dna Polymerase Lambda Bound To A Two
Nucleotide Gapped Dna Substrate With A Scrunched Da
Length = 335
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 8/329 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG R
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRR 245
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 246 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKV 305
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 306 GPGRVLPTPTEKDVFRLLGLPYREPAERD 334
>gi|417402918|gb|JAA48289.1| Putative dna polymerase iv family x [Desmodus rotundus]
Length = 575
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 157/552 (28%), Positives = 255/552 (46%), Gaps = 54/552 (9%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLE---- 67
+ G + +R +V G+ R +++ +++VQ G + + VTH++ MD E
Sbjct: 37 ARGWLSSLRAHVVPTGIGRARAELFEKQIVQHGGQIHAVQAPGVTHIVVDDGMDCERALR 96
Query: 68 ------ALLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ------ 115
+++ WL SL L E+ D + I DR L+Q Q
Sbjct: 97 LLRLPRLPPGAQLVKSAWL--SLCLQERRLVDTAEFSI-----FIPDRCLAQPQLSKADQ 149
Query: 116 GNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTA 175
+ E+ R + + ++ ++ + SS+ +S A
Sbjct: 150 DSATPPGACEALLRTAFSPPPTPARPVSPPQRTEEAASSRAQPGSDDGSSDGEETWVSAA 209
Query: 176 SASPDFSSHHITDPS---------------LLYNPP-----DLNKNITEIFGKLINIYRA 215
S + P + P + N +ITE L Y
Sbjct: 210 DLEALISGRYPIPPEGDGEPCPAPEGLGKWVCAQPSSQKVTNHNAHITEKLEVLAKAYSV 269
Query: 216 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 275
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYTKAINALKSFHKPVASYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI- 328
Query: 276 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 335
+ V + LF +WG G TAQ Y +G RTL+D++++ SLT Q +GLK+++D RI
Sbjct: 329 -SDSVPILELFSNIWGAGTKTAQMWYHQGFRTLEDIRSKASLTTQQAIGLKHYNDFLERI 387
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
PR E ++E+ ++ + + + P ++ + GSYRRGK +CGD+DV++ HPD SH+G S+
Sbjct: 388 PREEATEIEQTVRGSAQGLNPGLLCVACGSYRRGKVTCGDVDVLLTHPDGHSHQGIFSRL 447
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFG 454
+ L++ FL +DL+ + E G Y G+C PG RH R+D + P +A
Sbjct: 448 LDSLRQQGFLTDDLV--SQEENGPQ---QKYLGVCRLPGPGRRHRRLDIIIVPYSEFACA 502
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
L+ +TG+ NR +R LA++KG L + L A V + L TEK+VF
Sbjct: 503 LLYFTGSAYFNRSMRALAKTKGMSLSERALSTAVVRDTRGLKVGSGRVLPTPTEKDVFRL 562
Query: 515 LGFPWLEPHERN 526
LG P+ EP ER+
Sbjct: 563 LGLPYREPAERD 574
>gi|60594052|pdb|1XSL|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594056|pdb|1XSL|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594060|pdb|1XSL|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594064|pdb|1XSL|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|93278829|pdb|2BCQ|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dtmp
gi|93278833|pdb|2BCR|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp
gi|93278837|pdb|2BCS|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dcmp
gi|93278841|pdb|2BCU|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp And A T:t Mismatch
gi|93278845|pdb|2BCV|A Chain A, Dna Polymerase Lambda In Complex With Dttp And A Dna
Duplex Containing An Unpaired Dtmp
gi|114794130|pdb|2GWS|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794131|pdb|2GWS|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794132|pdb|2GWS|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794133|pdb|2GWS|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
Length = 335
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 8/329 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG R
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRR 245
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 246 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKV 305
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 306 GPGRVLPTPTEKDVFRLLGLPYREPAERD 334
>gi|46015602|pdb|1RZT|A Chain A, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015603|pdb|1RZT|E Chain E, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015604|pdb|1RZT|I Chain I, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015605|pdb|1RZT|M Chain M, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
Length = 331
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 8/329 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 9 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 68
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 69 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 126
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 127 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 186
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG R
Sbjct: 187 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRR 241
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 242 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKV 301
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 302 GPGRVLPTPTEKDVFRLLGLPYREPAERD 330
>gi|295322047|pdb|3MDA|A Chain A, Dna Polymerase Lambda In Complex With Arac
gi|295322051|pdb|3MDC|A Chain A, Dna Polymerase Lambda In Complex With Dfdctp
Length = 325
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 185/329 (56%), Gaps = 8/329 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 3 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 62
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 63 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 120
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 121 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 180
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG R
Sbjct: 181 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRR 235
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 236 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKV 295
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 296 GPGRVLPTPTEKDVFRLLGLPYREPAERD 324
>gi|388325745|pdb|3UQ2|A Chain A, Crystal Structure Of The Post-Catalytic Product Complex Of
Polymerase Lambda With An Rcmp Inserted Opposite A
Templating G And Damp Inserted Opposite A Templating T
At The Primer Terminus.
gi|394986423|pdb|4FO6|A Chain A, Crystal Structure Of The Pre-Catalytic Ternary Complex Of
Polymerase Lambda With A Datp Analog Opposite A
Templating T And An Rcmp At The Primer Terminus
Length = 329
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 183/329 (55%), Gaps = 13/329 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 12 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 71
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 72 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 129
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 130 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 189
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ G Y G+C PG R
Sbjct: 190 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV----------KGETKYLGVCRLPGPGRR 239
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 240 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKV 299
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 300 GPGRVLPTPTEKDVFRLLGLPYREPAERD 328
>gi|47220317|emb|CAG03351.1| unnamed protein product [Tetraodon nigroviridis]
Length = 521
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 194/343 (56%), Gaps = 24/343 (6%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAI--------PV----IEKLPFKIESADQ 244
+ NK+IT+ L Y G+ R+ SY KA+ PV + + + A Q
Sbjct: 189 NFNKHITDKLEVLAKAYTHQGDKWRALSYSKAVNALKSYHKPVTSYQVSAISTNYQEACQ 248
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 304
+ PGIGKSM D I EI+ +G L KL+H E V + LF +WG G TAQ Y++G
Sbjct: 249 I---PGIGKSMADKIDEIMESGHLRKLDHI--GEAVPVLELFSNIWGAGAKTAQLWYQQG 303
Query: 305 HRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 364
RTL+D++ + L+ +Q++GLK+++D R+PR E +E++++ A V P ++ + G
Sbjct: 304 FRTLEDIRTKAHLSSTQKIGLKHYEDFLDRMPRGEAAAIEKVVKDAALAVDPHLVAMACG 363
Query: 365 SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD 424
SYRRGKA+CGD+DV+I HPD KSH+G +K ++ L + FL +DL+ +H E G
Sbjct: 364 SYRRGKATCGDVDVLISHPDGKSHRGVFTKVLQSLHDSGFLTDDLV--SHEENGEQK--- 418
Query: 425 TYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
Y G+C PG RH R+D V P + A L+ +TG+ NR +R LA++K L +
Sbjct: 419 KYMGVCRLPGPGHRHRRLDIIVVPYNELACALMYFTGSAHFNRSMRALAKTKSMSLSEHS 478
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L G + V L TE++VF+ LG P+ +PHER+
Sbjct: 479 LNENVVREGSVK-VFGGAPLATPTERDVFNLLGIPYRQPHERD 520
>gi|291228090|ref|XP_002734013.1| PREDICTED: Polymerase (DNA directed), lambda-like [Saccoglossus
kowalevskii]
Length = 642
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 156/575 (27%), Positives = 285/575 (49%), Gaps = 73/575 (12%)
Query: 4 KTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA 63
K T +PA + + +F+++ G+ R I ++ + G T+ E++ + THV+
Sbjct: 88 KQTEAQSPA---DKFMKDVNIFILQAGLGKMRANILSKQFTKYGGTIHEQILDETTHVVV 144
Query: 64 ---MDLEALLQ----------QSVIRYQWL--------------------------EDSL 84
M+++ + +++ WL +D
Sbjct: 145 DEKMEIDRFCRILKLDTPPTHLKIVKGNWLSNCFAEEKLVDTCDFELDVNTDAKLEKDER 204
Query: 85 RLGEKVSEDLYR-IKLDPEGENIADRVLS-QIQGNGNTSSDGESSHRKKIKSSTEDVEHF 142
+ EK+ D+ R I P G + +D V++ +I SS +SS+ + KS+
Sbjct: 205 QSKEKLPADVTRGINEQPGGHSKSDVVVADEIHP---CSSKTDSSYHTEAKSN------- 254
Query: 143 QAESKGDVETNALSEAPNSPMSSESLTN----TLSTASASPDFSSHHITDPSLLYNPP-- 196
+SKG ++ E + S T+ S+A+++P+ S + + + P
Sbjct: 255 --QSKGYDSEDSAYEPSDDEDYLSSFTDGPTSGTSSATSTPNTSPQKLPKGNWVCAKPVS 312
Query: 197 ----DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 252
+ NK+IT+ L+ Y+ + R+ Y KAI ++ I + ++ +PGIG
Sbjct: 313 NLGTNHNKHITDKLQILMQTYKNTKDQWRALGYSKAISALKNYHKAITTWEEANSIPGIG 372
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
K M D + EI+ +G L K+++ + E+V+ I+LF ++ G+GP AQ+LY++G RT+DD++
Sbjct: 373 KKMADKVWEIIESGHLRKIDYVCQGEEVKAINLFTKIHGVGPTIAQELYQQGFRTIDDVR 432
Query: 313 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
+ L Q++G+K+FDD R+ R E ++E++++ + P +I + GSYRRGK +
Sbjct: 433 EKAKLNRQQKIGIKHFDDFLDRMSREEAGEIEKVVKDMALSINPGLIAMACGSYRRGKPT 492
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
CGD+DV++ HPD +SHKG K ++KL+ F+ +DL+ + E Y G+C
Sbjct: 493 CGDVDVIVTHPDGRSHKGIFHKLLEKLRATGFITDDLVSNEDVGEQK-----KYLGVCKL 547
Query: 433 PGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
PG + +H R+D V P Y ++ +TG+ NR +R LA KG L++ +
Sbjct: 548 PGEDRKHRRLDIIVVPYHEYPCAIMYFTGSSHFNRSMRALAGKKGMSLNEHAMKSGVIRK 607
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G ++ + S+ +E++VF LG + P ER+
Sbjct: 608 GHEK-ISEGVSIPVKSEEDVFRILGLEYRTPKERD 641
>gi|256599821|pdb|3HX0|A Chain A, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599825|pdb|3HX0|F Chain F, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599829|pdb|3HX0|K Chain K, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599833|pdb|3HX0|P Chain P, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
Length = 335
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 184/329 (55%), Gaps = 8/329 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRAAGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG R
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRR 245
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ N +R LA++KG L + L A + V
Sbjct: 246 HRRLDIIVVPYSEFACALLYFTGSAAFNASMRALAKTKGMSLSEHALSTAVVRNTHGAKV 305
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 306 GPGRVLPTPTEKDVFRLLGLPYREPAERD 334
>gi|9910500|ref|NP_064416.1| DNA polymerase lambda [Mus musculus]
gi|20138052|sp|Q9QXE2.1|DPOLL_MOUSE RecName: Full=DNA polymerase lambda; Short=Pol Lambda; AltName:
Full=DNA polymerase kappa
gi|6746425|gb|AAF27553.1|AF176099_1 DNA polymerase lambda [Mus musculus]
gi|6688681|emb|CAB65241.1| DNA polymerase lambda [Mus musculus]
gi|13435834|gb|AAH04767.1| Polymerase (DNA directed), lambda [Mus musculus]
gi|148710011|gb|EDL41957.1| polymerase (DNA directed), lambda [Mus musculus]
Length = 573
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 156/554 (28%), Positives = 259/554 (46%), Gaps = 57/554 (10%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++ G + +R ++ G+ R +++ ++++ G V + VTH++ MD E L
Sbjct: 35 EARGWLSSLRAHIMPAGIGRARAELFEKQIIHHGGQVCSAQAPGVTHIVVDEDMDYERAL 94
Query: 71 QQ----------SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT 120
+ +++ WL L+ G + + + + R L + Q + +
Sbjct: 95 RLLRLPQLPPGAQLVKSTWLSLCLQEGRLTDTEGFSLPM-------PKRSLDEPQPSKSG 147
Query: 121 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN-----TLSTA 175
++ + +T + + T + +SSE T+ +S+A
Sbjct: 148 QDASAPGTQRDLPRTTLSLSPPHTRAVSPPPTAEKPSRTQAQLSSEDETSDGEGPQVSSA 207
Query: 176 SASPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYRA 215
+ H+ T P P + N +ITE L Y
Sbjct: 208 DLQALITGHYPTPPEEDGGPDPAPEALDKWVCAQPSSQKATNYNLHITEKLEVLAKAYSV 267
Query: 216 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 275
G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H
Sbjct: 268 QGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHI- 326
Query: 276 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 335
+ V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD R+
Sbjct: 327 -SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFLDRM 385
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S
Sbjct: 386 PREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIFSCL 445
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFG 454
+ L++ FL +DL+ + E G Y G+C PG RH R+D V P +A
Sbjct: 446 LDSLRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGKRHRRLDIIVVPYCEFACA 500
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVF 512
L+ +TG+ NR +R LA++KG L + L A + QGV+ L TEK+VF
Sbjct: 501 LLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRN--SQGVKVGPGQVLPTPTEKDVF 558
Query: 513 DFLGFPWLEPHERN 526
LG P+ EP ER+
Sbjct: 559 KHLGLPYREPAERD 572
>gi|194709142|pdb|3C5G|A Chain A, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
gi|194709146|pdb|3C5G|B Chain B, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
Length = 335
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 185/329 (56%), Gaps = 8/329 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG R
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRR 245
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR ++ LA++KG L + L A + V
Sbjct: 246 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMKALAKTKGMSLSEHALSTAVVRNTHGCKV 305
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 306 GPGRVLPTPTEKDVFRLLGLPYREPAERD 334
>gi|296278520|pdb|3MGH|A Chain A, Binary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|296278524|pdb|3MGH|C Chain C, Binary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|296278528|pdb|3MGI|A Chain A, Ternary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|320089902|pdb|3PML|A Chain A, Crystal Structure Of A Polymerase Lambda Variant With A
Dgtp Analog Opposite A Templating T
gi|320089903|pdb|3PML|B Chain B, Crystal Structure Of A Polymerase Lambda Variant With A
Dgtp Analog Opposite A Templating T
gi|321159982|pdb|3PMN|A Chain A, Ternary Crystal Structure Of Polymerase Lambda Variant
With A Gt Mispair At The Primer Terminus With Mn2+ In
The Active Site
gi|321159986|pdb|3PNC|A Chain A, Ternary Crystal Structure Of A Polymerase Lambda Variant
With A Gt Mispair At The Primer Terminus And Sodium At
Catalytic Metal Site
gi|388325731|pdb|3UPQ|A Chain A, Crystal Structure Of The Pre-Catalytic Ternary Complex Of
Polymerase Lambda With An Ratp Analog Opposite A
Templating T.
gi|388325735|pdb|3UQ0|A Chain A, Crystal Structure Of The Post-Catalytic Product Complex Of
Polymerase Lambda With An Ramp At The Primer Terminus
Length = 329
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 183/329 (55%), Gaps = 13/329 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 12 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 71
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 72 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 129
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 130 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 189
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ G Y G+C PG R
Sbjct: 190 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV----------KGETKYLGVCRLPGPGRR 239
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 240 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKV 299
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 300 GPGRVLPTPTEKDVFRLLGLPYREPAERD 328
>gi|197725066|pdb|3C5F|A Chain A, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
gi|197725070|pdb|3C5F|B Chain B, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
Length = 335
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 184/329 (55%), Gaps = 8/329 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG R
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRR 245
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P +A L+ +TG+ NR + LA++KG L + L A + V
Sbjct: 246 HRRLDIIVVPYSEFACALLYFTGSAHFNRSMAALAKTKGMSLSEHALSTAVVRNTHGCKV 305
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L TEK+VF LG P+ EP ER+
Sbjct: 306 GPGRVLPTPTEKDVFRLLGLPYREPAERD 334
>gi|443727490|gb|ELU14231.1| hypothetical protein CAPTEDRAFT_169992 [Capitella teleta]
Length = 556
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 151/521 (28%), Positives = 254/521 (48%), Gaps = 45/521 (8%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMD-------LEALLQQS 73
++ +V G+ R+ I++++L + G + L+ ++THV+ D L L Q+
Sbjct: 64 IKALIVPTGIGKARISIFKKQLEKYGGSFLSDLNDAELTHVIVDDKVEFARLLNILKVQN 123
Query: 74 V------IRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESS 127
+ + QWL SL+ D ++ A +S+ +T SD + S
Sbjct: 124 ISEDIEIVTTQWLSSSLK--------------DHTCKDTASYCISR----PSTKSDSKKS 165
Query: 128 HRKKIKS-STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 186
+ S S +E A+ + ++ S + +E +H
Sbjct: 166 EVEPCSSKSFNTIEKPAAQIICNDSSDYDSGSDRETGVAEERQGVTKNVPCGSWVCAHSS 225
Query: 187 TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK 246
+P P+ NK+IT+ L Y + R+ Y KAI ++K P I + ++ K
Sbjct: 226 GNPR-----PNFNKHITDKLEALAKTYENTNDRWRALGYAKAIMTLKKHPKAIATWEEAK 280
Query: 247 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 306
LPG+G+ + D I EIV +G+L KL+ E+++ I+LF ++WG G TA+ +G R
Sbjct: 281 SLPGVGEKLADKIWEIVESGQLRKLDELTSQEEIQAINLFSDIWGAGATTARAWVAQGFR 340
Query: 307 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 366
TLDD++ + L Q++GL+Y++++ R+PR E ++E ++ KA +++ +I + GS+
Sbjct: 341 TLDDIRTKAHLNRHQKIGLQYYEELLDRMPRSEAAEIEAVVVKAAKDIDENMIAMACGSF 400
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
RRGKA+CGD+DV+I HPD KSHKG +K + L + FL +DL+ + + Y
Sbjct: 401 RRGKATCGDVDVLITHPDGKSHKGVFTKILTSLHQTGFLTDDLV-----RQEDNGHQKKY 455
Query: 427 FGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
G+C PG +H R+D V P +A + +TG+ NR +R LA G L + L
Sbjct: 456 LGVCLLPGEGRKHRRLDIIVVPYSEFACSKLYFTGSAHFNRSMRHLAGKMGMSLSEHSLN 515
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G Q + L+ TE VF LG + P ER+
Sbjct: 516 TGVTRKNG-QKLNEGVPLQTPTEDSVFQHLGLKYRPPEERD 555
>gi|426252965|ref|XP_004020173.1| PREDICTED: DNA polymerase lambda isoform 2 [Ovis aries]
Length = 483
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 169/288 (58%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + G+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EEPQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y +G R L+D++N LT Q +GLK++DD R+PR E ++E+ +++A + + P ++
Sbjct: 260 WYHQGFRCLEDIRNHACLTTQQAIGLKHYDDFLDRMPREEAAEIEQTVREAAQALNPGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L++ FL +DL+ +H E G
Sbjct: 320 CVACGSYRRGKATCGDMDVLLTHPDGRSHQGVFSRLLDSLRQQGFLTDDLV--SHEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCQLPGPGRRHRRLDIIVVPYSELACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A S V + L TEK+VF FLG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRSAQGLKVGSGQVLPTPTEKDVFRFLGLPYREPAERD 482
>gi|194205745|ref|XP_001499852.2| PREDICTED: DNA polymerase lambda, partial [Equus caballus]
Length = 526
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 156/516 (30%), Positives = 244/516 (47%), Gaps = 90/516 (17%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ---- 71
+ +R ++ G+ R +++ ++++Q G + + VTH++ MD E L+
Sbjct: 41 LSSLRAHVLPTGIGRARAEVFEKQIIQHGGQICPAQAAGVTHIVVDEGMDYERALRILRL 100
Query: 72 ------QSVIRYQWLEDSLRLGEK----------------------------------VS 91
+++ WL SL L E+
Sbjct: 101 PQLPPGAQLVKSAWL--SLCLQERRLVDTAGFSIFIPNRCLDQTQLSKADQDSSTPPGAR 158
Query: 92 EDLYRIKLDPEGENI--------ADRVLS-QIQ-GNGNTSSDGESSHRKKIKSSTEDVEH 141
E L R L P A+ LS Q+Q G + SDGE + + S D+E
Sbjct: 159 EPLLRTALSPPPSPARPVSPPRRAEEALSTQVQPGFDDEISDGEET-----QVSAADLE- 212
Query: 142 FQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKN 201
A G T L E P + + A S +++H N++
Sbjct: 213 --ALISGHYPT--LLEEDGEPCPAPKGLDKWVCAQPSSQKATNH-------------NRH 255
Query: 202 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQE 261
ITE L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I E
Sbjct: 256 ITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACGIPGIGKRMAEKIIE 315
Query: 262 IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ 321
I+ +G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ SLT Q
Sbjct: 316 ILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQASLTTQQ 373
Query: 322 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 381
+GLK+++D RIPR E ++E+ +QK+ + P ++ + GSYRRGKA+CGD+DV++
Sbjct: 374 AIGLKHYNDFLERIPREEATEIEQTVQKSAQAFNPGLLCVACGSYRRGKATCGDVDVLLT 433
Query: 382 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-R 440
HPD +SH+G LS+ + L++ FL +DL+ + E G Y G+C PG RH R
Sbjct: 434 HPDGRSHQGILSRLLDSLRQQGFLTDDLV--SQEENGQQ---QKYLGVCQLPGPGRRHRR 488
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 489 LDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKG 524
>gi|73998288|ref|XP_861980.1| PREDICTED: DNA polymerase lambda isoform 3 [Canis lupus familiaris]
Length = 484
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 173/290 (59%), Gaps = 12/290 (4%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + G+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 203 EETQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQM 260
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G+RTL+D++N+ SLT Q +GLK++DD RIPR E ++E+ ++K+ + P ++
Sbjct: 261 WYQQGYRTLEDIRNQASLTTQQAIGLKHYDDFLERIPREEATEIEQTVRKSAQAFNPGLL 320
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L+ FL +DL+ + E G
Sbjct: 321 CVACGSYRRGKATCGDVDVLLTHPDGQSHQGIFSRLLDSLRRQGFLTDDLV--SQEENGQ 378
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D + P +A L+ +TG+ NR +R LA++KG
Sbjct: 379 Q---QKYLGVCRLPGPGRRHRRLDIIIVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 435
Query: 479 LDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 526
L + L +T QG++ L TEK+VF LG P+ EP ER+
Sbjct: 436 LSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLGLPYREPVERD 483
>gi|354496554|ref|XP_003510391.1| PREDICTED: DNA polymerase lambda isoform 2 [Cricetulus griseus]
Length = 476
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 170/290 (58%), Gaps = 12/290 (4%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + G+PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 195 EGPQEACGIPGIGKRMAEKIVEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 252
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y +G R L+D+++ DSLT Q +GLK++DD R+PR E +E+ ++ + + P ++
Sbjct: 253 WYHQGFRNLEDIRSLDSLTTQQAIGLKHYDDFLERMPREEAADIEKTVRISAQAFNPGLL 312
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +H E G
Sbjct: 313 CVACGSYRRGKMTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLV--SHEENGQ 370
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG + RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 371 Q---QKYLGVCRLPGPKQRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 427
Query: 479 LDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + QGV+ L TEK+VF LG P+ EP ER+
Sbjct: 428 LSEHALSAAVVRN--SQGVKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 475
>gi|12834033|dbj|BAB22759.1| unnamed protein product [Mus musculus]
Length = 312
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 178/317 (56%), Gaps = 12/317 (3%)
Query: 213 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 272
Y G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+
Sbjct: 4 YSVQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLD 63
Query: 273 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 332
H + V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD
Sbjct: 64 HI--SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFL 121
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 392
R+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G
Sbjct: 122 DRMPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIF 181
Query: 393 SKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIY 451
S + L++ FL +DL+ + E G Y G+C PG RH R+D V P +
Sbjct: 182 SCLLDSLRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGKRHRRLDIIVVPYCEF 236
Query: 452 AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEK 509
A L+ +TG+ NR +R LA++KG L + L A + QGV+ L TEK
Sbjct: 237 ACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRN--SQGVKVGPGQVLPTPTEK 294
Query: 510 EVFDFLGFPWLEPHERN 526
+VF LG P+ EP ER+
Sbjct: 295 DVFKHLGLPYREPAERD 311
>gi|403259673|ref|XP_003922329.1| PREDICTED: DNA polymerase lambda isoform 4 [Saimiri boliviensis
boliviensis]
Length = 483
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 168/288 (58%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + + EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGSKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L++++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + P ++
Sbjct: 260 WYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREEAAEIEQTVQKAAQAFNPRLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|156369028|ref|XP_001627992.1| predicted protein [Nematostella vectensis]
gi|156214957|gb|EDO35929.1| predicted protein [Nematostella vectensis]
Length = 400
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 184/329 (55%), Gaps = 10/329 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N++IT+ L Y + R+ Y KAI I+ KIE+ ++ LP +G+ +
Sbjct: 80 NEHITDQLQILATSYANTKDQWRALGYKKAISSIKSYHKKIETEEECHRLPFVGERLAKK 139
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EIV TG L +L+ D K I+LF VWG GP A+ KG RTL+DLK L
Sbjct: 140 IWEIVQTGHLRRLDFI--DPKTEAINLFSGVWGAGPKAAELWVSKGLRTLEDLKRHGGLN 197
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GL+Y+D+ R+PR E ++ +++ A E + P ++ + GSYRRGK++CGD+DV
Sbjct: 198 KQQEIGLRYYDEFNERMPREEAGKIGEVVKAATEIIDPSLLCITCGSYRRGKSTCGDVDV 257
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
++ HPD KSH G + + +LK FL +DL+ + ++ Y G+C PG + +
Sbjct: 258 LVSHPDGKSHHGVMGPLLCELKSSGFLTDDLVSADIEDQ------KKYMGVCKLPGEDTK 311
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H R+D V P + +A ++ +TG+D NR +RLLA+ G L + L G + +
Sbjct: 312 HRRLDIIVVPYNEWACAIVYFTGSDHFNRSIRLLAKKNGMSLSNHALKTGVVRKDGAK-I 370
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+++ ++E+E+FD LG + EP ER+
Sbjct: 371 YDGSTVTVNSERELFDLLGLEYREPQERD 399
>gi|395741934|ref|XP_003777666.1| PREDICTED: DNA polymerase lambda [Pongo abelii]
Length = 476
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 195 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 252
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 253 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 312
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 313 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEENGQ 370
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 371 Q---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 427
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 428 LSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 475
>gi|426365959|ref|XP_004050033.1| PREDICTED: DNA polymerase lambda isoform 3 [Gorilla gorilla
gorilla]
Length = 483
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D+ ++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V + L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRNTHGCKVGSGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|332212623|ref|XP_003255419.1| PREDICTED: DNA polymerase lambda isoform 3 [Nomascus leucogenys]
Length = 482
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 201 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 258
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 259 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 318
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 319 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEENGQ 376
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 377 Q---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 433
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 434 LSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 481
>gi|310793348|gb|EFQ28809.1| hypothetical protein GLRG_03953 [Glomerella graminicola M1.001]
Length = 819
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 181/339 (53%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI ++ N Y + + R +Y KAI +++ P KI +A++ LPG+G+ + D
Sbjct: 484 NGRTIEILQQMCNYYERVNDTWRPIAYRKAITQLKRQPSKISTAEEAIRLPGVGQRLADK 543
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LE E++ + + +F ++G+G A +G RTL+DLK + LT
Sbjct: 544 IEEIVTTNRLQRLESAEQEPMDKVLQMFLNIYGVGSVQASHFVSQGFRTLEDLKEKAKLT 603
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G+ ++DD+ TRIPR EV+ + +++ ++ P V ++ GGSYRRG GD+D
Sbjct: 604 PNQRIGIDHYDDLNTRIPRSEVKLLGAVVRSEAAKLDPSVQLIIGGSYRRGALDSGDVDF 663
Query: 379 VIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+I ++ FL K VK L+ FL L S +G+ + G C P
Sbjct: 664 IITKKGARATSDLTPFLHKLVKTLETQNFLVARLAGSRDETDGS-----KWHGCCVLPKI 718
Query: 435 --------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
R + R+DF V P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 719 RGVNDENYRRVWRRVDFLVVPETEIGAALIYFTGNDIFNRSIRLLASKKGMRLNQKGLYK 778
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G+ + ++ E+ +F+ LG W EPHER
Sbjct: 779 DVMRGPGRVKLTEGELVEGQDERRIFEILGVKWREPHER 817
>gi|344274827|ref|XP_003409216.1| PREDICTED: DNA polymerase lambda isoform 2 [Loxodonta africana]
Length = 483
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PG+GK M + + EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGVGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G RTL+D++++ SLT Q +GLKY+ D R+PR E ++++ +Q++ + + P ++
Sbjct: 260 WYQQGFRTLEDIRSQASLTTQQAIGLKYYGDFLERMPREEAAEIQQTVQESAQALNPGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S + L++ FL +DL+ + + G
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHQGIFSHLLDSLRQRGFLTDDLV--SQEQNGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCQLPGPRRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A V L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRDTQGLKVGPGWVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|340507938|gb|EGR33773.1| DNA-directed polymerase lambda, putative [Ichthyophthirius
multifiliis]
Length = 325
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 187/328 (57%), Gaps = 14/328 (4%)
Query: 208 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 267
KL IY+ + R+ +Y +AI +++ +I+S + +K + GIG ++ IQEI+ G
Sbjct: 4 KLYQIYQQEKDLGRTIAYRRAISILQGHKQQIQSKEDIKKIKGIGDKIKLKIQEILQNGT 63
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLK 326
K+++ DEK +I++ +VWGIG TA LY+KG +T++ LK N+ L +Q++GLK
Sbjct: 64 CEKIQNLINDEKNISINILSKVWGIGTNTAHILYKKGIKTIEQLKQNQHLLNKNQKIGLK 123
Query: 327 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-----IILCGGSYRRGKASCGDLDVVIM 381
Y+D++ R+ R E ++ + +Q+ + + P+ II C GSYRR K +CGD+D++I
Sbjct: 124 YYDELNKRMHREEATKIIQKVQEQIKILYPKQYDKYNIIAC-GSYRREKETCGDVDILIC 182
Query: 382 HPD--RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH 439
D + HK + +++L + L +DL +S + GV+ Y G+C +L
Sbjct: 183 RNDFEQYKHKNLMITIIQQLHKCGLLTDDLALPKNSRQ----GVENYMGVCQLSSDQLHR 238
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 499
RID K YP IY F LI +TG+D NR +RL A KG+ L D GLFP + V
Sbjct: 239 RIDIKYYPNFIYGFALIYFTGSDYFNRSMRLFARKKGFSLSDNGLFPVQRCPNKVKVVSG 298
Query: 500 RTSLKFDTEKEVFDFLGFPWLEPHERNL 527
T + TEK+VFD L + EP RNL
Sbjct: 299 ETICCY-TEKDVFDALHLKYQEPKMRNL 325
>gi|291463291|ref|NP_001167556.1| DNA polymerase lambda isoform b [Homo sapiens]
gi|158257882|dbj|BAF84914.1| unnamed protein product [Homo sapiens]
Length = 483
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|340372384|ref|XP_003384724.1| PREDICTED: DNA polymerase lambda-like [Amphimedon queenslandica]
Length = 581
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 195/344 (56%), Gaps = 14/344 (4%)
Query: 190 SLLYNPPDLNKNITEIFGKLINIYR--ALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK 246
S L+ + N+ +T +L+ Y+ +L +D+ R+ S KA+ +++ P +I + ++
Sbjct: 245 STLHAQVNHNEAVTSKLEELLLEYKNSSLPKDKWRAMSLTKAVAAVKRHPKEITTHEEAH 304
Query: 247 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 306
+P +GK + D I EIV++G L +L+H +K K I LF + G+G A++ Y +G+R
Sbjct: 305 SIPFVGKRLADKIYEIVSSGHLRRLDHIDK-AKQSVIDLFKGIHGVGQIVAEQFYAQGYR 363
Query: 307 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 366
TLDDLK + L Q++G KY+ + R+ R EVE++ER +++ + P + ++ GS+
Sbjct: 364 TLDDLKEANILNRQQQIGFKYYHEFAERMDRSEVEEIERKVREGCHLLDPNLEVVTCGSF 423
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
RRGK +CGD+D+++ HPD +SHKG ++ LK FL +DL E T G Y
Sbjct: 424 RRGKPTCGDVDILVTHPDGRSHKGIFQPLIRVLKNDGFLTDDLTL----HEDTSDGSCKY 479
Query: 427 FGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
FG+C PG +H RID + P Y L+ +TG+ NR LR A+ G L + L
Sbjct: 480 FGVCMLPGDGRKHRRIDIYICPYSEYPLMLLHFTGSGHFNRSLRSRADKMGMSLSEHSL- 538
Query: 486 PATYGSGGKQGVRA--RTSLKFDTEKEVFDFLGFPWLEPHERNL 527
G K GV+ T L TE +VF +LG +LEPH+R+L
Sbjct: 539 --NAGVVRKNGVKVFEGTPLPVFTEADVFKYLGVDYLEPHDRDL 580
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++N +F G+ +VE+G+ R +I ++L + G TV S+ +THV+ M L+
Sbjct: 11 EANSLFGGIVGLIVEQGLGKGRKRILEKQLEEKGGTVALSPSQTLTHVIVGPNMKYNRLV 70
Query: 71 -----------QQSVIRYQWLEDSLRLGEKVSEDLYRIKL 99
+ +++ WL SL GE V Y + L
Sbjct: 71 SLLKLKDPLPPEVTIVTADWLSASLVAGESVDHTPYLLPL 110
>gi|397510314|ref|XP_003825543.1| PREDICTED: DNA polymerase lambda isoform 4 [Pan paniscus]
Length = 483
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|402881275|ref|XP_003904199.1| PREDICTED: DNA polymerase lambda isoform 3 [Papio anubis]
Length = 483
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 168/288 (58%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TA+
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTARM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + + L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|301756146|ref|XP_002913916.1| PREDICTED: DNA polymerase lambda-like isoform 2 [Ailuropoda
melanoleuca]
Length = 483
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 169/290 (58%), Gaps = 12/290 (4%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G RTL+D++ + SLT Q +GLK++DD RIPR E ++E+ +++A + P ++
Sbjct: 260 WYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPREEATEIEQTVREAAQAFNPGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV++ HPD +SH+G S + L+ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSLLLDSLRRQGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 526
L + L +T QG++ L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|194374341|dbj|BAG57066.1| unnamed protein product [Homo sapiens]
Length = 312
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 31 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 88
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 89 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 148
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 149 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQ 206
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 207 Q---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 263
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 264 LSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 311
>gi|348578601|ref|XP_003475071.1| PREDICTED: DNA polymerase lambda-like isoform 2 [Cavia porcellus]
Length = 482
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 167/289 (57%), Gaps = 11/289 (3%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PG+GK M + IQEI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EGPQEACSIPGVGKRMAEKIQEILESGHLRKLDHI--SESVPVLQLFSSIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y +G R+L+D++N SLT Q +GLK++ D R+PR E ++E+ + KA P ++
Sbjct: 260 WYHQGFRSLEDIRNLASLTAQQAIGLKHYSDFLERMPRDEAAEIEQTVSKAAYTCNPGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ S+E
Sbjct: 320 CVACGSYRRGKPTCGDVDVLITHPDGRSHRGVFSRLLDGLRQQGFLTDDLV----SQE-- 373
Query: 420 DSGVDT-YFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
D+G Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 374 DNGQQQKYLGVCRLPGPRRRHRRLDIIVVPYGEFACALLYFTGSAHFNRSMRALAKTKGM 433
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L G + V L TEK+VF LG P+ EP ER+
Sbjct: 434 SLSEHALSTVIRNPRGLK-VGPGQVLPTPTEKDVFRLLGLPYREPAERD 481
>gi|114632451|ref|XP_001170157.1| PREDICTED: DNA polymerase lambda isoform 17 [Pan troglodytes]
gi|410219294|gb|JAA06866.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410307614|gb|JAA32407.1| polymerase (DNA directed), lambda [Pan troglodytes]
Length = 483
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 167/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|417399140|gb|JAA46600.1| Putative dna polymerase iv family x [Desmodus rotundus]
Length = 335
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 194/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESNKQPKLLHRVVEQLQKVCFITDTL----------SKGETKFMGVCQ 240
Query: 432 YP----GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P G+E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYSIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|157830425|pdb|1BPE|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta; Evidence For
A Common Polymerase Mechanism
Length = 335
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 196/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRRDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|442570357|pdb|3V7K|A Chain A, Co-crystal Structure Of K72e Variant Of Rat Polymerase
Beta: Enzyme- Dna Binary Complex
gi|442570360|pdb|3V7L|A Chain A, Apo Structure Of Rat Dna Polymerase Beta K72e Variant
Length = 340
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 196/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 16 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 75
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 76 EEIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 135
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 136 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 195
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 196 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 245
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 246 LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 305
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 306 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 339
>gi|148747154|ref|NP_058837.2| DNA polymerase beta [Rattus norvegicus]
gi|585064|sp|P06766.4|DPOLB_RAT RecName: Full=DNA polymerase beta
gi|640121|pdb|2BPF|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|640124|pdb|2BPG|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|640127|pdb|2BPG|B Chain B, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|14277831|pdb|1HUO|A Chain A, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
gi|14277832|pdb|1HUO|B Chain B, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
gi|14277837|pdb|1HUZ|A Chain A, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
gi|14277838|pdb|1HUZ|B Chain B, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
gi|157830424|pdb|1BPD|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
gi|427930609|pdb|3UXN|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
gi|427930610|pdb|3UXN|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
gi|71051051|gb|AAH98668.1| Polymerase (DNA directed), beta [Rattus norvegicus]
gi|149057766|gb|EDM09009.1| rCG43201 [Rattus norvegicus]
Length = 335
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 196/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|113812195|gb|AAH03548.2| POLL protein [Homo sapiens]
gi|119570145|gb|EAW49760.1| polymerase (DNA directed), lambda, isoform CRA_d [Homo sapiens]
Length = 300
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 165/280 (58%), Gaps = 8/280 (2%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 307
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 27 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 84
Query: 308 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYR
Sbjct: 85 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYR 144
Query: 368 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYF 427
RGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G Y
Sbjct: 145 RGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYL 199
Query: 428 GLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG L + L
Sbjct: 200 GVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALST 259
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + V L TEK+VF LG P+ EP ER+
Sbjct: 260 AVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 299
>gi|427930612|pdb|3UXO|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
gi|427930613|pdb|3UXO|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
gi|427930616|pdb|3UXP|A Chain A, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
gi|427930617|pdb|3UXP|B Chain B, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
Length = 335
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 196/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSENDENEYPHRRIDIRLQPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|442570354|pdb|3V7J|A Chain A, Co-crystal Structure Of Wild Type Rat Polymerase Beta:
Enzyme-dna Binary Complex
Length = 340
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 196/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 16 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 75
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 76 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 135
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 136 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 195
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 196 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 245
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 246 LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 305
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 306 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 339
>gi|444731046|gb|ELW71413.1| DNA polymerase beta [Tupaia chinensis]
Length = 335
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K E+G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVEEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVCFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 V-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|403342628|gb|EJY70640.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 659
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 231/502 (46%), Gaps = 74/502 (14%)
Query: 88 EKVSEDLYRIKLDPEGENIADRVLSQIQG---------------NGNTSSDGE------- 125
E++ +D+YR+K +G+N RV ++ NGN S + E
Sbjct: 170 EEIIDDIYRMKFQKDGKNSQKRVFDELSKSSSNILHKNETKSHLNGNQSQENEDENFGIN 229
Query: 126 ----SSHRKKIKSSTEDVE----------------------------HFQAESKGDV--E 151
SSHR +D E H A S+G E
Sbjct: 230 LHEESSHRSLRSKFYKDGEECFSEDSYLHSWKPEYIANRENYWDKKKHMFACSRGSTLKE 289
Query: 152 TNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLIN 211
+ + +S N S + +S + D P +N I + KL
Sbjct: 290 NQIIEDGQIKELSDVKQENL----SQDANLASQEMIDTQTTKKKP-MNDEIIKQLEKLYK 344
Query: 212 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 271
Y A + R Y + + + I S +Q++ +P +G + +QE++ G + +
Sbjct: 345 YYEAQDDKGRMHGYRRGLTFLRSYKDPIYSVEQLESVPYLGNGILKKVQELIEEGSIKRF 404
Query: 272 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDD 330
E DE V L VWG+GP AQKLY++G R+++DL+ N+ LT Q++GLKY++D
Sbjct: 405 EFLSHDESVVVTELLEGVWGVGPKLAQKLYKQGIRSIEDLRQNQHLLTEMQKIGLKYYED 464
Query: 331 IKTRIPRHEVEQMERLLQKAGEEVLPE----VIILCGGSYRRGKASCGDLDVVIMHPDRK 386
IK RIPRHEV QM L+++ ++P + + GSYRRGK SCGD+D++I D
Sbjct: 465 IKQRIPRHEVTQMLELIRQTAFGLIPNGEKLLKVDACGSYRRGKQSCGDIDILITKVDGS 524
Query: 387 SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY-PGRELRHRIDFKV 445
S GF+ V +L++ FL+E L S G++ Y G+C P R RID K
Sbjct: 525 SIHGFVKLLVLELEKQGFLKERLGGLRFSHIGSEG----YMGMCQLRPDLPFR-RIDIKA 579
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 505
YP Y F + +TG+ NR +RL A+ KGY L D GL P G K V S+
Sbjct: 580 YPLSQYGFAQLYFTGSGNFNRSMRLFAQKKGYSLSDYGLTPVIRVKGEK--VAEFESVPC 637
Query: 506 DTEKEVFDFLGFPWLEPHERNL 527
+TE++VF L + P+ER++
Sbjct: 638 ETEEDVFKALNLDYKPPYERDI 659
>gi|354482350|ref|XP_003503361.1| PREDICTED: DNA polymerase beta [Cricetulus griseus]
gi|344238920|gb|EGV95023.1| DNA polymerase beta [Cricetulus griseus]
Length = 335
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 196/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN +IT++ +L N + + + + +Y KA VI K P KI+S ++ K LPG+G +
Sbjct: 11 LNSDITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGEEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESNKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYSIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GITGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|77736473|ref|NP_001029936.1| DNA polymerase beta [Bos taurus]
gi|109893767|sp|Q27958.3|DPOLB_BOVIN RecName: Full=DNA polymerase beta
gi|73587414|gb|AAI03230.1| Polymerase (DNA directed), beta [Bos taurus]
gi|296472338|tpg|DAA14453.1| TPA: DNA polymerase beta [Bos taurus]
gi|440901046|gb|ELR52049.1| DNA polymerase beta [Bos grunniens mutus]
Length = 335
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 194/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|296222127|ref|XP_002757050.1| PREDICTED: DNA polymerase beta [Callithrix jacchus]
gi|403303648|ref|XP_003942437.1| PREDICTED: DNA polymerase beta [Saimiri boliviensis boliviensis]
Length = 335
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNAGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAYALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|393715248|pdb|3V72|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator
E295k: Enzyme- Dsdna
Length = 335
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 195/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ ++ + P
Sbjct: 241 LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINKYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|190156|gb|AAA60133.1| beta-polymerase [Homo sapiens]
Length = 335
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 191/336 (56%), Gaps = 19/336 (5%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+DV++ HP F S+ K+ K + + E L + G + G+C P
Sbjct: 191 MDVLLTHP------SFTSESTKQPKLLHQVVEQLQKVHFITDTRSKGETKFMGVCQLPSK 244
Query: 435 ---RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
+E H RID ++YP+D Y G++ +TG+D+ N+ +R A+ KG+ +++ + P
Sbjct: 245 NDEKEYPHRRIDIRLYPKDQYYCGVLYFTGSDIFNKNMRAHAKEKGFTINEYTIRPL--- 301
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 302 --GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|393219346|gb|EJD04833.1| Nucleotidyltransferase [Fomitiporia mediterranea MF3/22]
Length = 592
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 189/340 (55%), Gaps = 18/340 (5%)
Query: 198 LNKNITEIFGKL--INIYRALGEDR----RSFSYYKAIPVIEKLPFKIESADQVKGLPGI 251
+N++I + +L IN + G+ R R FSY K+I I P +I + + + GI
Sbjct: 253 VNQDIVDKLSELEEINRTKISGDPREQRWRVFSYGKSIRAIRAHPKRIRNYEDAIAIRGI 312
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
G I EI+ TG L +++ ++ E V+ I LF ++G+G +TAQK Y G RTLDD+
Sbjct: 313 GSKTAAKIVEIIKTGDLGRIK-YDNTEDVQAIKLFNNIYGVGLSTAQKWYSMGCRTLDDV 371
Query: 312 KNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
KN +++ Q +GLKY+DDI TRIPR EVE++ ++ E+ P++ L GSYRR
Sbjct: 372 KNRKGGITVSDVQEIGLKYYDDINTRIPRGEVEEIFNRVKLIALEIDPKLFFLLMGSYRR 431
Query: 369 GKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
G SCGD+D+++ P D ++H+G L + +K+L L EDL E + TY
Sbjct: 432 GAKSCGDIDILMTRPTDDGRTHQGVLRRLLKELHLQGILTEDLAIP----EDFNDLEQTY 487
Query: 427 FGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
GLC + R RID V P LI +TG+D+ NR +RL A+S GY L GL
Sbjct: 488 RGLCRKDDKSPRRRIDILVVPYHERGGALIYYTGDDIFNRAIRLKAKSMGYSLSQHGLAT 547
Query: 487 ATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GK+ V A + +TE+++F LG PW EPHER
Sbjct: 548 RVLRDHRGKKMVPADL-VASETEEQIFHILGVPWQEPHER 586
>gi|339717642|pdb|3RH5|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Deoxynucleotide (Dctp)
gi|339717646|pdb|3RH6|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Ribonucleotide (Rctp)
Length = 335
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++A+TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLAFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|383872891|ref|NP_001244632.1| DNA polymerase beta [Macaca mulatta]
gi|355697903|gb|EHH28451.1| DNA polymerase beta [Macaca mulatta]
gi|355779661|gb|EHH64137.1| DNA polymerase beta [Macaca fascicularis]
gi|380788011|gb|AFE65881.1| DNA polymerase beta [Macaca mulatta]
gi|383419305|gb|AFH32866.1| DNA polymerase beta [Macaca mulatta]
gi|384947768|gb|AFI37489.1| DNA polymerase beta [Macaca mulatta]
Length = 335
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 194/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|206278|gb|AAA41901.1| DNA polymerase beta [Rattus norvegicus]
gi|1055330|gb|AAB00389.1| high molecular weight DNA polymerase beta [Rattus norvegicus]
Length = 335
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 197/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L++++F I T S+ G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRF-----ITDTRSK-----GETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|342879714|gb|EGU80951.1| hypothetical protein FOXB_08510 [Fusarium oxysporum Fo5176]
Length = 808
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 185/339 (54%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + R+ +Y K I +++ KI +A++ + LP +G +
Sbjct: 473 NSRTIEVLQSMADYYTRVNDHWRTTAYRKVISTLKRQETKITTAEEAQRLPSVGPRLAQK 532
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTLDDLK L+
Sbjct: 533 IEEIVTTDRLQQLEYAQKEPMDEALQLFLGIYGVGNSQAQQWLAQGFRTLDDLKTNAKLS 592
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q +G++++DD+ TRIPR E+E + ++++ + V P+V ++ GGSYRRG + GD+D
Sbjct: 593 PNQLVGIEHYDDLNTRIPRREIEALGAIVRRGAQRVDPQVELIIGGSYRRGAETSGDIDF 652
Query: 379 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+I + +S + FL V++L+ FL L S + +G+ + G C P
Sbjct: 653 IITKSNTESSAELRPFLDSLVQRLEAEDFLVARLASSRSASDGSK-----WHGCCVLPKI 707
Query: 435 --------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
R + RIDF + P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 708 SGFNKEHYRPVWRRIDFLLVPESEMGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYK 767
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ V ++ E+++FD LG W EPHER
Sbjct: 768 DVMRGPQRVKVTEGELVEGRNERKIFDILGVKWREPHER 806
>gi|344281574|ref|XP_003412553.1| PREDICTED: DNA polymerase beta-like [Loxodonta africana]
Length = 335
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P +I+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHQIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DLK NED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLKKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ E+V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVEKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVGFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|21729749|ref|NP_035260.1| DNA polymerase beta [Mus musculus]
gi|48428077|sp|Q8K409.3|DPOLB_MOUSE RecName: Full=DNA polymerase beta
gi|21359795|gb|AAM49616.1|AF513911_1 DNA polymerase beta [Mus musculus]
gi|26345958|dbj|BAC36630.1| unnamed protein product [Mus musculus]
gi|38511640|gb|AAH60998.1| Polymerase (DNA directed), beta [Mus musculus]
gi|74145064|dbj|BAE27405.1| unnamed protein product [Mus musculus]
gi|74191657|dbj|BAE30399.1| unnamed protein product [Mus musculus]
gi|148700936|gb|EDL32883.1| polymerase (DNA directed), beta [Mus musculus]
Length = 335
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 195/340 (57%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP+ S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YP----GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P G+E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSEKDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|73979125|ref|XP_532790.2| PREDICTED: DNA polymerase beta isoform 1 [Canis lupus familiaris]
Length = 335
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|34538970|gb|AAQ74388.1| DNA polymerase lamda2 [Homo sapiens]
Length = 483
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 165/288 (57%), Gaps = 8/288 (2%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ LT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQAFLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRRGKA+CGD+DV+I HPD SH+G S+ + L++ FL +DL+ + E G
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGWSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQ 377
Query: 420 DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG
Sbjct: 378 Q---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMS 434
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 435 LSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|312597477|pdb|3OGU|A Chain A, Dna Polymerase Beta Mutant 5p20 Complexed With 6bp Of Dna
Length = 335
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+L V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINLLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGKTKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGMLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|302926226|ref|XP_003054252.1| hypothetical protein NECHADRAFT_74784 [Nectria haematococca mpVI
77-13-4]
gi|256735193|gb|EEU48539.1| hypothetical protein NECHADRAFT_74784 [Nectria haematococca mpVI
77-13-4]
Length = 818
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 186/339 (54%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + R+ +Y K I +++ K+ +A++ + LP IG + +
Sbjct: 483 NARTIEVLQSMADYYDRINDHWRTTAYRKVISTLKRQDTKVTTAEEAQRLPSIGTRLAEK 542
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTLDDLK + L+
Sbjct: 543 IEEIVTTDRLRRLEYTQKEPMDEALQLFLGIYGVGTSQAQQWLAQGFRTLDDLKAKAKLS 602
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q LG++++DD+ TRIPR EVE + +++K ++V P V ++ GGSYRRG + GD+D
Sbjct: 603 PNQLLGIEHYDDLNTRIPRREVEALGTVVRKGAQQVDPNVELIIGGSYRRGAETSGDIDF 662
Query: 379 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+I P+ +S + FL V +L+ FL L S + +G+ + G C P
Sbjct: 663 IITKPNTESSSELRPFLDDLVHRLEAQGFLVARLASSRSASDGS-----KWHGCCVLPKI 717
Query: 435 --------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
+ + RIDF + P L+ +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 718 NGFNDGNYQPIWRRIDFLLVPETEIGAALLYFTGNDIFNRSIRLLASKKGMRLNQRGLYK 777
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ V ++ E+ +F+ LG W EPHER
Sbjct: 778 DVMRGPQRVKVTEGELVEGRDERRIFEILGVKWREPHER 816
>gi|431902223|gb|ELK08724.1| DNA polymerase beta [Pteropus alecto]
Length = 335
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPNKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|291409035|ref|XP_002720811.1| PREDICTED: DNA-directed DNA polymerase beta [Oryctolagus cuniculus]
Length = 335
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAVHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YP----GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPIENDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|355712605|gb|AES04404.1| polymerase , beta [Mustela putorius furo]
Length = 334
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|380487011|emb|CCF38321.1| hypothetical protein CH063_09433 [Colletotrichum higginsianum]
Length = 824
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 182/339 (53%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI ++ N Y + + R +Y KAI +++ P KI +A + LPG+G+ + D
Sbjct: 489 NGRTIEILQQMCNYYERINDTWRPIAYRKAITQLKRQPNKISTAKEAIRLPGVGQRLADK 548
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LE+ E++ + +F ++G+G A +G RTL+DLK + LT
Sbjct: 549 IEEIVTTNRLQRLENAEQEPMDEILQIFLRIYGVGSIQASHFISQGFRTLEDLKEKARLT 608
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G+ ++DD+ TRIPR E+E + +++ ++ P V ++ GGSYRRG GD+D
Sbjct: 609 PNQRIGIDHYDDLNTRIPRSEIELLGAVVRSEAAKLDPAVQLIIGGSYRRGADDSGDIDF 668
Query: 379 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
++ ++ FL + VK L+ +FL L S +G+ + G C P
Sbjct: 669 LVTKKGTRATSELVPFLHQLVKTLETQEFLVARLAGSREESDGS-----KWHGCCVLPET 723
Query: 435 --------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
R + R+DF + P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 724 RGVNDENYRRVWRRVDFLLVPETEMGAALIYFTGNDIFNRSIRLLASKKGMRLNQRGLYK 783
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G+ + ++ E+++F+ LG W EPHER
Sbjct: 784 DVMRGPGRVKLTEGELVEGQDERKIFEILGVKWREPHER 822
>gi|84579323|dbj|BAE73095.1| hypothetical protein [Macaca fascicularis]
Length = 335
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKGRS 334
>gi|46107476|ref|XP_380797.1| hypothetical protein FG00621.1 [Gibberella zeae PH-1]
Length = 810
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 187/339 (55%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ K+ + Y + + R+ +Y KAI +++ KI SA++ + LP +G +
Sbjct: 475 NARTIEVLQKMSDYYNRIDDHWRTTAYRKAISTLKRQETKITSAEEAQRLPSVGTRLAQK 534
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LE +K+ + LF ++G+G + AQ+ +G RTL+DLK + L+
Sbjct: 535 IEEIVTTDRLQRLEFAQKEPMDEALQLFLSIYGVGNSQAQQWLAQGFRTLEDLKAKAKLS 594
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q LG++++ D+ TRIPR EVE + ++++ + + PEV ++ GGSYRRG + GD+D+
Sbjct: 595 PNQSLGIEHYADLNTRIPRSEVEALGLVVKRTAQHIDPEVELIIGGSYRRGAETSGDIDL 654
Query: 379 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+I + +S + FL V++L+ FL L S + +G+ + G C P
Sbjct: 655 IITKSNTESSADLRPFLDSLVQRLETEGFLVARLASSRSTSDGS-----KWHGCCVLPKV 709
Query: 435 --------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
+ + RIDF + P L+ +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 710 SGFSDDDYKPVWRRIDFLLVPESERGAALLYFTGNDIFNRSMRLLASKKGMRLNQRGLYK 769
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ V ++ E+++FD LG W EPHER
Sbjct: 770 DVMRGPQRVKVTEGELVEGRDERKIFDILGVKWREPHER 808
>gi|297682785|ref|XP_002819090.1| PREDICTED: DNA polymerase beta [Pongo abelii]
Length = 335
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKECPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|60827766|gb|AAX36812.1| polymerase beta [synthetic construct]
Length = 336
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|196009372|ref|XP_002114551.1| hypothetical protein TRIADDRAFT_28268 [Trichoplax adhaerens]
gi|190582613|gb|EDV22685.1| hypothetical protein TRIADDRAFT_28268 [Trichoplax adhaerens]
Length = 342
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 184/335 (54%), Gaps = 13/335 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK+IT+I L Y LG+ R Y KAI I+ P +I + ++ + +P IGK + D
Sbjct: 15 NKHITDILEILQKKYENLGDQWRVKGYTKAISSIKNYPREITTREEAEAIPNIGKRLADK 74
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI++ G L KL++ + D + +++F ++WG GPATA +G TLDD++ + L
Sbjct: 75 IWEIISCGHLRKLDYMDNDVQT-ALNVFTKIWGAGPATAHNWIAQGLYTLDDIRAKAKLN 133
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+ Q +GLKY+DD RIPR EV ++E ++++ + + ++ GSYRR K +CGD+D+
Sbjct: 134 YHQSIGLKYYDDFNERIPRAEVVEIEAVIREEATAIELGLEVITCGSYRREKPTCGDVDI 193
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP--GRE 436
+I HP+ +SH+G K +++L+ FL E L+ + D G+C P GR+
Sbjct: 194 LISHPNGRSHQGVYHKLLRRLQAKDFLTEILV-----NQDVDIDHQKLLGVCKLPEEGRK 248
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD----TGLFPATYGSG 492
R R+D V P +A L+ +TG+ NR +RLLA K L + G+
Sbjct: 249 YR-RLDIIVVPYREWACSLLYFTGSGHFNRSMRLLARKKRMHLSEHAISVGVLRKVTACS 307
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
G Q + T + E ++F LG +LEP +R+
Sbjct: 308 GNQKLTRGTPVPTKCEADIFALLGLDYLEPKDRDC 342
>gi|4505931|ref|NP_002681.1| DNA polymerase beta [Homo sapiens]
gi|114619950|ref|XP_001143904.1| PREDICTED: DNA polymerase beta isoform 3 [Pan troglodytes]
gi|332241022|ref|XP_003269687.1| PREDICTED: DNA polymerase beta [Nomascus leucogenys]
gi|397505584|ref|XP_003823336.1| PREDICTED: DNA polymerase beta [Pan paniscus]
gi|544186|sp|P06746.3|DPOLB_HUMAN RecName: Full=DNA polymerase beta
gi|1943095|pdb|9ICG|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943098|pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943101|pdb|9ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943104|pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna
gi|1943107|pdb|9ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Artificial Mother Liquor
gi|1943110|pdb|9ICL|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Pyrophosphate And Mncl2
gi|1943113|pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
gi|1943116|pdb|9ICN|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mgcl2
gi|1943119|pdb|9ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Dttp And Mgcl2
gi|1943122|pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943125|pdb|9ICQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1
Millimolar) And Mncl2 (5 Millimolar)
gi|1943128|pdb|9ICR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxycytidine-5'-Triphosphate, Soaked In The Presence Of
Dctp And Mncl2
gi|1943131|pdb|9ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mncl2
gi|1943134|pdb|9ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyguanosine-5'-Triphosphate, Soaked In The Presence
Of Dgtp And Mncl2
gi|1943137|pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mncl2 (5 Millimolar)
gi|1943140|pdb|9ICV|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Zncl2
gi|1943143|pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Native Structure
gi|1943146|pdb|9ICX|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna (non Gapped Dna Only)
gi|1943149|pdb|9ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7) Complexed With Seven
Base Pairs Of Dna (Non Gapped Dna Only)
gi|1943152|pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
gi|1943155|pdb|8ICC|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (no 5'-phosphate)
gi|1943158|pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cdcl2 (1 Millimolar)
gi|1943161|pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(10 Millimolar) And Mgcl2 (50 Millimolar)
gi|1943164|pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943167|pdb|8ICH|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943170|pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943173|pdb|8ICJ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mgcl2
gi|1943176|pdb|8ICK|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5
Millimolar)
gi|1943179|pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Nicl2 (5 Millimolar)
gi|1943182|pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mncl2 (5 Millimolar), And Ammonium
Sulfate (75 Millimolar)
gi|1943185|pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Atp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943188|pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943191|pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943194|pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar)
gi|1943197|pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943200|pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943203|pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943206|pdb|8ICU|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943209|pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943212|pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943215|pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943218|pdb|8ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mncl2
gi|1943221|pdb|8ICZ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium
Sulfate (75 Millimolar)
gi|1943224|pdb|9ICA|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-O-(1-Thiotriphosphate), Soaked In The
Presence Of Datp(Alpha)s And Mncl2
gi|1943227|pdb|9ICB|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Cocl2
gi|1943230|pdb|9ICC|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Crcl3
gi|1943233|pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cucl2 (0.1 Millimolar)
gi|1943236|pdb|9ICF|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Zncl2
gi|1943239|pdb|1ZQQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943242|pdb|1ZQR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Nicl2
gi|1943245|pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl
(0.5 Millimolar)
gi|1943248|pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.01 Millimolar) And Zncl2 (0.02 Millimolar)
gi|1943257|pdb|7ICE|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cacl2
gi|1943260|pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar) (Four-Day Soak)
gi|1943263|pdb|7ICG|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Cdcl2
gi|1943266|pdb|7ICH|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cocl2
gi|1943269|pdb|7ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(0.1 Millimolar)
gi|1943272|pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2
(0.1 Millimolar)
gi|1943275|pdb|7ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Mgcl2
gi|1943278|pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar)
gi|1943281|pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(1.0 Millimolar)
gi|1943284|pdb|7ICN|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Nicl2
gi|1943287|pdb|7ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943290|pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar)
gi|1943293|pdb|7ICQ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943296|pdb|7ICR|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Zncl2
gi|1943299|pdb|7ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943302|pdb|7ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2 And Mgcl2
gi|1943305|pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar)
gi|1943308|pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar) And In The Absence Of Nacl
gi|1943311|pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cacl2 (5 Millimolar)
gi|1943315|pdb|1ZQA|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar) At Ph 7.5
gi|1943318|pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(150 Millimolar)
gi|1943321|pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar)
gi|1943324|pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(150 Millimolar)
gi|1943327|pdb|1ZQE|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(saturated Solution)
gi|1943330|pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl
(150 Millimolar)
gi|1943333|pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 6.5
gi|1943336|pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 7.5
gi|1943339|pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar)
gi|1943342|pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
gi|1943345|pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Mgcl2 (75 Millimolar)
gi|1943348|pdb|1ZQL|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
gi|1943351|pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar)
gi|1943354|pdb|1ZQN|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943357|pdb|1ZQO|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943360|pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Nacl (75 Millimolar)
gi|2392196|pdb|1BPX|A Chain A, Dna Polymerase BetaDNA COMPLEX
gi|2392200|pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And
Ddctp
gi|2392204|pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
gi|28373759|pdb|1MQ2|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine And Damp
gi|28373763|pdb|1MQ3|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine Template Paired
With Dctp
gi|56966095|pdb|1TV9|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Adenine And Incoming
Cytidine
gi|56966099|pdb|1TVA|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Thymidine And Incoming
Cytidine
gi|75765763|pdb|1ZJM|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus
gi|75765767|pdb|1ZJN|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus With Dgtp
gi|99032272|pdb|2FMP|A Chain A, Dna Polymerase Beta With A Terminated Gapped Dna Substrate
And Ddctp With Sodium In The Catalytic Site
gi|99032273|pdb|2FMQ|A Chain A, Sodium In Active Site Of Dna Polymerase Beta
gi|99032277|pdb|2FMS|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Magnesium In The Catalytic Site
gi|118138264|pdb|2I9G|A Chain A, Dna Polymerase Beta With A Benzo[c]phenanthrene Diol
Epoxide Adducted Guanine Base
gi|126030823|pdb|2ISO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Difluoromethylene Triphosphate
gi|126030827|pdb|2ISP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Methylene Triphosphate
gi|146387680|pdb|2P66|A Chain A, Human Dna Polymerase Beta Complexed With Tetrahydrofuran
(abasic Site) Containing Dna
gi|164519479|pdb|2PXI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Monofluoromethylene Triphosphate
gi|188595971|pdb|3C2K|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Manganese In The Active Site
gi|188595975|pdb|3C2L|A Chain A, Ternary Complex Of Dna Polymerase Beta With A C:dapcpp
Mismatch In The Active Site
gi|188595979|pdb|3C2M|A Chain A, Ternary Complex Of Dna Polymerase Beta With A G:dapcpp
Mismatch In The Active Site
gi|258588692|pdb|3ISB|A Chain A, Binary Complex Of Human Dna Polymerase Beta With A Gapped
Dna
gi|258588696|pdb|3ISC|A Chain A, Binary Complex Of Human Dna Polymerase Beta With An Abasic
Site (Thf) In The Gapped Dna
gi|258588700|pdb|3ISD|A Chain A, Ternary Complex Of Human Dna Polymerase Beta With An
Abasic Site (Thf): Dapcpp Mismatch
gi|297342962|pdb|3JPN|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dichloro Methyl Triphosphate
gi|297342966|pdb|3JPO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochloromethy Triphosphate
gi|297342970|pdb|3JPP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monomethyl Meth Triphosphate
gi|297342974|pdb|3JPQ|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monobromo Methy Triphosphate
gi|297342978|pdb|3JPR|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dimethyl Methyl Triphosphate
gi|297342982|pdb|3JPS|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Methyl M Triphosphate
gi|297342986|pdb|3JPT|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Chloro M Triphosphate
gi|297787720|pdb|3MBY|A Chain A, Ternary Complex Of Dna Polymerase Beta With Template Base
A And 8oxodgtp In The Active Site With A Dideoxy
Terminated Primer
gi|317455186|pdb|3LK9|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dtmp(Cf2)p(Cf2)p
gi|339717641|pdb|3RH4|A Chain A, Dna Polymerase Beta With A Dideoxy-Terminated Primer With
An Incoming Ribonucleotide (Rctp)
gi|372466921|pdb|3RJE|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position
gi|372466925|pdb|3RJF|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg At Template Position Paired With
Non-Hydrolyzable Datp Analog (Dapcpp)
gi|372466929|pdb|3RJG|A Chain A, Binary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:da Base-Pair At Primer Terminus
gi|372466933|pdb|3RJH|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg:da At Primer Terminus And
Dg:dcmp(Cf2)ppin The Active Site
gi|372466937|pdb|3RJI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position Paired With
Non-Hydrolyzable Dctp Analog (Dcmp(Cf2)pp)
gi|372466941|pdb|3RJJ|A Chain A, Ternary Complex Crystal Structure Of Dna Polymerase Beta
With Template 8odg Provides Insight Into Mutagenic
Lesion Bypass
gi|372466945|pdb|3RJK|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:dc Base Pair At Primer Terminus And
Dg:dcmp(Cf2)pp In The Active Site
gi|380764187|pdb|3TFR|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cf2)pp In The Active
Site
gi|380764191|pdb|3TFS|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cfh)pp In The Active
Site: Stereoselective Binding Of (S) Isomer
gi|390981022|pdb|4DO9|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Stereoselective
Binding Of R-Isomer
gi|390981026|pdb|4DOA|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Non-Interactive
Binding Of S-Isomer
gi|390981030|pdb|4DOB|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:
Stereoselective Binding Of R-Isomer
gi|390981034|pdb|4DOC|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:binding Of
S-Isomer
gi|19550959|gb|AAL91594.1|AF491812_1 DNA polymerase beta [Homo sapiens]
gi|292397|gb|AAB59441.1| beta-polymerase [Homo sapiens]
gi|1060896|dbj|BAA06099.1| DNA polymerase beta [Homo sapiens]
gi|49168492|emb|CAG38741.1| POLB [Homo sapiens]
gi|49456561|emb|CAG46601.1| POLB [Homo sapiens]
gi|71682446|gb|AAI00289.1| Polymerase (DNA directed), beta [Homo sapiens]
gi|76827621|gb|AAI06910.1| Polymerase (DNA directed), beta [Homo sapiens]
gi|119583625|gb|EAW63221.1| polymerase (DNA directed), beta [Homo sapiens]
gi|189054625|dbj|BAG37475.1| unnamed protein product [Homo sapiens]
gi|208967076|dbj|BAG73552.1| polymerase (DNA directed) beta [synthetic construct]
gi|410209680|gb|JAA02059.1| polymerase (DNA directed), beta [Pan troglodytes]
gi|410259830|gb|JAA17881.1| polymerase (DNA directed), beta [Pan troglodytes]
gi|410333957|gb|JAA35925.1| polymerase (DNA directed), beta [Pan troglodytes]
Length = 335
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|351709536|gb|EHB12455.1| DNA polymerase beta [Heterocephalus glaber]
Length = 335
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLMELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDMSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKLDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HPD S L V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPDFTSESSKQPKLLHHVVEQLQKIHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A +G+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEQGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|229597882|pdb|3GDX|A Chain A, Dna Polymerase Beta With A Gapped Dnd Substrate And
Dtmp(Cf2)pp
Length = 326
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 2 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 61
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 62 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 121
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 122 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 181
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 182 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 231
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 232 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 291
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 292 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 325
>gi|408394188|gb|EKJ73422.1| hypothetical protein FPSE_06415 [Fusarium pseudograminearum CS3096]
Length = 814
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 187/339 (55%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ K+ + Y + + R+ +Y KAI +++ KI SA++ + LP +G +
Sbjct: 479 NARTIEVLQKMSDYYSRIDDHWRTTAYRKAISTLKRQETKITSAEEAQRLPSVGTRLAQK 538
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTL+DLK + L+
Sbjct: 539 IEEIVTTDRLQRLEYAQKEPMDEALQLFLGIYGVGNSQAQQWLAQGFRTLEDLKAKAKLS 598
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q LG++++ D+ TRIPR EVE + +++++ + + PEV ++ GGSYRRG + GD+D+
Sbjct: 599 PNQSLGIEHYADLNTRIPRSEVEALGLVVKRSAQHIDPEVELIIGGSYRRGAETSGDIDL 658
Query: 379 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+I + +S + FL V++L+ FL L S +G+ + G C P
Sbjct: 659 IITKSNTESSADLRPFLDSLVQRLETEGFLVARLASSRSDSDGS-----KWHGCCVLPEI 713
Query: 435 --------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
+ + RIDF + P L+ +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 714 SGFSDDDYKPVWRRIDFLLVPESERGAALLYFTGNDIFNRSMRLLASKKGMRLNQRGLYK 773
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ V ++ E+ +FD LG W EPHER
Sbjct: 774 DVMRGPQRVKVTEGELVEGRDERRIFDILGVKWREPHER 812
>gi|118197144|dbj|BAF37047.1| DNA polymerase lambda [Coprinopsis cinerea]
Length = 800
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALG--EDR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
N+++ + +L+ ++ A +DR R F+Y KAI + P +I S ++ + GIG
Sbjct: 464 NQDVIDKLTELMKLHEAKPSEDDRWRVFAYSKAIRALRSYPRRIRSLEEASKIRGIGSKT 523
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I EI+ TGKL ++E +E+ V +LF ++G+G +TA K Y G RTLDD++
Sbjct: 524 AQKIVEILETGKLRRIE-YERTGDVVAAALFQGIYGVGRSTAYKWYNAGCRTLDDIRQGK 582
Query: 316 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
L+ Q +GLKY+DDI +R+PR E + + +++ + P++ + GSYRRGKA+
Sbjct: 583 GGVKLSAVQEIGLKYYDDINSRMPREEAKAIYDIIKPIALSLDPKLFVEIMGSYRRGKAT 642
Query: 373 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
CGD+D++I P D K+H G L + +++L + L EDL E D Y GLC
Sbjct: 643 CGDIDILITRPTDDGKTHAGVLGRLIQELHAVGVLTEDLALP----EEIDDLEGVYRGLC 698
Query: 431 TYPG--RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
P R RIDF P LI +TG+D+ NR +RL A GY L+ GLF
Sbjct: 699 RLPNVPNSKRRRIDFLTVPYHSRGAALIYYTGDDIFNRAMRLKANVMGYSLNQRGLFGNV 758
Query: 489 YGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
+ V+ + +TE+E+F LG PW EPHER
Sbjct: 759 VRDPRDRRVKLNRGQIIASETEEEIFRILGVPWQEPHER 797
>gi|410956338|ref|XP_003984799.1| PREDICTED: DNA polymerase beta [Felis catus]
Length = 335
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL K+ED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|387015596|gb|AFJ49917.1| DNA polymerase beta-like [Crotalus adamanteus]
Length = 335
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 187/335 (55%), Gaps = 19/335 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+ IT++ +L N + + + +Y KA VI K P KI+S + K L GIG + +
Sbjct: 12 NQAITDLLSELANYEKNVNRAIHKYNAYRKAASVISKYPSKIKSGSEAKKLDGIGTKIAE 71
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 316
I E ++TGKL K+E +D+ +I+L V GIGPA A+KL ++G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRKIEKIRQDDTSSSINLLTRVSGIGPAAARKLVDEGIKTLEDLKKNEHK 131
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H QR+GLKYF D + RIPR E+ +M+ ++ +V P I GS+RRG S GD+
Sbjct: 132 LNHHQRIGLKYFKDFEKRIPRKEMLEMQDVVLSEVNKVDPAYIATVCGSFRRGAESSGDM 191
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE 436
D+++ HPD F S+ KK K + + E L + G + G+C P R+
Sbjct: 192 DILLTHPD------FTSESAKKPKLLHQVVEQLESICFVTDTLSKGETKFMGVCQLPSRD 245
Query: 437 -----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
RID ++ P+D Y G++ +TG+D+ N+ +R A G+ L++ + P
Sbjct: 246 DDIIYPYRRIDIRLIPKDQYYCGVLYFTGSDLFNKNMRAHALEMGFTLNEYTIRPL---- 301
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD+L + + EP ER+
Sbjct: 302 -GVTGV-AGEPLPVDSEKDIFDYLQWQYREPKERS 334
>gi|403336657|gb|EJY67523.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 611
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 193/382 (50%), Gaps = 16/382 (4%)
Query: 151 ETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLI 210
E + + +S E L N S + S + + P +N I + KL
Sbjct: 241 ENQIIEDGQIKELSDEKLINR----SQDGNLESQEMINTETTKKKP-MNDEIIKQLEKLY 295
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
Y A + R Y + + + I S +Q++ +P +G + +QE++ G + +
Sbjct: 296 KYYEAQDDKGRMHGYRRGLTFLRSYKDPIYSVEQLESVPYLGHGILKKVQELIEEGSIKR 355
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFD 329
E DE V L VWG+GP AQKLY++G R+++DL+ N+ LT Q++GLKY++
Sbjct: 356 FEFLSHDESVVVAELLEGVWGVGPKLAQKLYKQGIRSIEDLRQNQHLLTEMQKIGLKYYE 415
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPE----VIILCGGSYRRGKASCGDLDVVIMHPDR 385
DIK RIPR EV +M L++K ++P + + GSYRRGK SCGD+D++I D
Sbjct: 416 DIKQRIPRDEVTEMLELIRKTALILIPNGQKLLKVDACGSYRRGKQSCGDIDILITKVDG 475
Query: 386 KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKV 445
S GF+ V +L++ FL+E L S G++ Y G+C RID K
Sbjct: 476 SSIHGFVKLLVLELEKQGFLKERLGGLRFSHTGSEG----YMGMCQLKPDLPFRRIDIKA 531
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 505
YP Y F + +TG+ NR +RL A+ KGY L D GL P G K V S+
Sbjct: 532 YPLSQYGFAQLYFTGSGNFNRSMRLFAQKKGYSLSDYGLMPVIRVKGEK--VAEFESVPC 589
Query: 506 DTEKEVFDFLGFPWLEPHERNL 527
+TE++VF L + P+ER++
Sbjct: 590 ETEEDVFKALNLDYKPPYERDI 611
>gi|148232172|ref|NP_001081643.1| DNA polymerase beta [Xenopus laevis]
gi|6015014|sp|O57383.3|DPOLB_XENLA RecName: Full=DNA polymerase beta
gi|2661842|emb|CAA75741.1| DNA polymerase beta [Xenopus laevis]
gi|76780321|gb|AAI06330.1| PolB protein [Xenopus laevis]
Length = 334
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 187/338 (55%), Gaps = 26/338 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPTKIKSGTEAKKLDGVGAKIAE 71
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 316
I E + TGKL KLE +D+ +I+ V GIGPA A+K +++G +TLDDL+ NE
Sbjct: 72 KIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIKTLDDLRNNEHK 131
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H Q++GLK+FDD + RIPR E+ QM+ ++ + PE I GS+RRG S GD+
Sbjct: 132 LNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDM 191
Query: 377 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+++ HPD S L + V+ L++ F+ + L+ G + G+C
Sbjct: 192 DILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLV----------KGDTKFMGVCQL 241
Query: 433 PGRELR----HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
P + RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P
Sbjct: 242 PCESDQDYPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPL- 300
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G G+ A L D+EK++FD++ + + EP +R+
Sbjct: 301 ----GVTGI-AGEPLPIDSEKDIFDYIQWKYREPKDRS 333
>gi|429544471|pdb|4F5N|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
Metal Free Dctp Analog
gi|429544475|pdb|4F5O|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
One Metal Bound Dctp Analog
gi|429544479|pdb|4F5P|A Chain A, Open Ternary Mismatch Complex Of R283k Dna Polymerase Beta
With A Datp Analog
gi|429544483|pdb|4F5Q|A Chain A, Closed Ternary Complex Of R283k Dna Polymerase Beta
gi|429544487|pdb|4F5R|A Chain A, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
gi|429544488|pdb|4F5R|B Chain B, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
gi|442570775|pdb|4GXI|A Chain A, R283k Dna Polymerase Beta Binary Complex With A Templating
8og
gi|442570779|pdb|4GXJ|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Dctp Analog
gi|442570783|pdb|4GXK|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Datp Analog
Length = 335
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 192/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ ++ A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMKAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|62898806|dbj|BAD97257.1| polymerase (DNA directed), beta variant [Homo sapiens]
Length = 335
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKS----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV+ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLPTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|406859068|gb|EKD12139.1| fungal specific transcription factor domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 2097
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 176/330 (53%), Gaps = 10/330 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ EI G++ Y + + R+ +Y KA+ ++K KI +Q L IG +
Sbjct: 1772 NRQTIEILGEMGAYYERIRDQWRTLAYRKAVGTLKKQSVKITRYEQAIELQFIGHRLALK 1831
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI TG L +L++ D +T+ LF +++G+GP A K + GH+TLDDL+ +L
Sbjct: 1832 IEEIAITGHLRRLDNARLDPNDKTLQLFLKIYGVGPGQADKWIQAGHKTLDDLRALPNLH 1891
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q++GL ++DD +TRIPR +V + +++KA E+ P+V + GGSYRRG + GD+D
Sbjct: 1892 KNQKVGLDHYDDFETRIPRDQVTALGEIVKKAVHEIDPQVEAIIGGSYRRGALTSGDIDF 1951
Query: 379 VIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I +S FL+K V +L FL L S + G C PG
Sbjct: 1952 IITKRGTESSLDLLPFLNKLVARLTHDAFLVCPLAVPHQSGS-------KWHGACVLPGN 2004
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RIDF + P + L+ +TG+D+ NR +RLLA KG RL+ GL+ G+
Sbjct: 2005 PIWRRIDFLIVPESEFGAALLYFTGDDIFNRSMRLLASKKGMRLNQRGLYKDVMRGPGRV 2064
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ ++ E+ +FD LG PW P ER
Sbjct: 2065 KLNEGEFVEGADERRIFDVLGVPWRPPQER 2094
>gi|395857477|ref|XP_003801118.1| PREDICTED: DNA polymerase beta [Otolemur garnettii]
Length = 335
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKS----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESPKQPKLLHRVVEQLQKVLFITDTL----------SKGETKFMGVCQ 240
Query: 432 YP----GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P RE H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPRNSDEREYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++F+++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSERDIFEYIQWKYREPKDRS 334
>gi|551677|gb|AAB60688.1| DNA polymerase beta [Homo sapiens]
Length = 335
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT+ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDKLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|358379789|gb|EHK17468.1| hypothetical protein TRIVIDRAFT_57340 [Trichoderma virens Gv29-8]
Length = 624
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 182/335 (54%), Gaps = 8/335 (2%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N EI K+ Y + + R+ +Y KAI ++++ KI + ++ LP IG+
Sbjct: 293 NQDNPNARTIEILQKMNGYYERINDHWRTIAYRKAISILKQQSVKITTEEEAYRLPSIGR 352
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ I+EIVTT KL +LE E+D + F +++G+G A++ +G RTL+D+K
Sbjct: 353 RLAQKIEEIVTTDKLQRLECAEEDPTDHALQTFLKIYGVGNKIAEQWIAQGWRTLEDVKQ 412
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
LT SQR+G++++DD+ TRIPR EV + +++KA E+ V ++ GGSYRRG S
Sbjct: 413 HAKLTPSQRVGMEHYDDLNTRIPRMEVTALGDIVKKAAAEIDAAVQLIIGGSYRRGAESS 472
Query: 374 GDLDVVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
D+D+++ P +S + FLS+ + +L+ KFL L S +G+ + G C
Sbjct: 473 HDIDLIVTKPGTESVAELRAFLSRLIDQLERDKFLVARLASSHAGGDGS-----KWHGCC 527
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
R + RIDF + P LI +TGND+ NR +RLLA K RL+ GL+
Sbjct: 528 NGEYRPIWRRIDFLLVPEAELGAALIYFTGNDIFNRSMRLLASKKRMRLNQRGLYRDVLR 587
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + ++ EK +F+ LG W EP ER
Sbjct: 588 GPNRAKITEGELVESRDEKRIFEILGVKWREPWER 622
>gi|50550535|ref|XP_502740.1| YALI0D12364p [Yarrowia lipolytica]
gi|49648608|emb|CAG80928.1| YALI0D12364p [Yarrowia lipolytica CLIB122]
Length = 710
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 189/347 (54%), Gaps = 32/347 (9%)
Query: 194 NPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 251
+P D N N E+ +L+ Y + R+ SY KA+ V+++ P KI + + LPGI
Sbjct: 383 DPVDKNPNWKTIEVLSRLLKYYEDKHDQWRAQSYRKALNVLKRQPKKITTKKEAVKLPGI 442
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
G S+ IQEIV T L L + D V+ SLF +WG+G ATA+K Y++G+RTLDD+
Sbjct: 443 GDSIGSKIQEIVETNGLKLLNVTKLDTSVKVTSLFEGIWGVGKATARKWYKEGYRTLDDI 502
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
+ +LT +Q++GL+++DD + RIPR EV + ++QKA E+ PEV GSYRRG A
Sbjct: 503 AKKATLTPNQKVGLEHYDDFQERIPRDEVTRHFMVVQKAAHEIDPEVDAHIMGSYRRGAA 562
Query: 372 SCGDLDVVIMHPDRKSHKG--------FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV 423
S GD+D++ + KG FL + V KL E FL+ L +G
Sbjct: 563 SSGDIDMIF------TKKGATLDELQPFLKELVHKLTEQGFLKCGL-----------TGA 605
Query: 424 DT-YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482
T ++G RIDF + P I +TGN + NR +RLLA KGY L+
Sbjct: 606 STKWYGCSKLKDIPQWRRIDFLLVPWAEKGAAFIYFTGNVLFNRSIRLLANKKGYSLNQH 665
Query: 483 GLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERNL 527
GL+ G++G + ++ ++E ++F+ LG P+ EP ERN+
Sbjct: 666 GLYAGVL--RGERGSKLNDGYLVEGESEHKIFEILGVPYWEPWERNV 710
>gi|106880497|ref|NP_001006894.2| DNA-directed DNA polymerase beta [Xenopus (Silurana) tropicalis]
gi|89272500|emb|CAJ82346.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis]
Length = 334
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 190/339 (56%), Gaps = 26/339 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPSKIKSGTEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 315
+ I E + TGKL KLE +D+ +I+ V GIGPA A+KL ++G +TLDDL+ NE
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKLVDEGIKTLDDLRNNEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYFDD + RIPR E+ QM+ + + + P+ I GS+RRG S GD
Sbjct: 131 KLNHHQKIGLKYFDDFEKRIPRKEMIQMQEKVIDRIKILDPQYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HPD S L + V+ L+E +F+ + L+ G + G+C
Sbjct: 191 MDVLLTHPDFTSESAKQPHLLRQVVQCLEECEFITDTLV----------KGDTKFMGVCQ 240
Query: 432 YPG---RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
P E H R+D ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P
Sbjct: 241 LPCEGDEEHPHRRLDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTLNEYTLRPL 300
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G G+ A L D+EK++FD++ + + EP +R+
Sbjct: 301 -----GVTGI-AGEPLPIDSEKDIFDYIQWKYREPKDRS 333
>gi|206276|gb|AAA41900.1| polymerase beta [Rattus norvegicus]
Length = 318
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 184/313 (58%), Gaps = 26/313 (8%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 81 NFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 140
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 398
M+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S L + V++
Sbjct: 141 MQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQ 200
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDFKVYPRDIYAF 453
L++++F I T S+ G + G+C P E H RID ++ P+D Y
Sbjct: 201 LQKVRF-----ITDTRSK-----GETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYC 250
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 513
G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+E+++FD
Sbjct: 251 GVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFD 304
Query: 514 FLGFPWLEPHERN 526
++ + + EP +R+
Sbjct: 305 YIQWRYREPKDRS 317
>gi|347837705|emb|CCD52277.1| hypothetical protein [Botryotinia fuckeliana]
Length = 818
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 184/353 (52%), Gaps = 31/353 (8%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
P+ N + +I ++ + Y +G+ R+ SY +A ++ P I + + +P IG+ +
Sbjct: 475 PNPNNHTIQILSRMKDYYERIGDQWRTRSYMQACGQLKNQPALIRTFSEAIVIPKIGQRI 534
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I+EIV TG+L +LEH E + + + LF ++G+ A K +GHR+ DLKN
Sbjct: 535 AKKIEEIVLTGRLRRLEHAEAEPDDKILKLFMGIYGVNYKLASKWISQGHRSFADLKNNI 594
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
LT SQR+G++++DD++ RIPRHE+EQ+ + + + + PE+ I GGSYRRG + GD
Sbjct: 595 KLTPSQRIGIEHYDDLQLRIPRHEIEQLGKFITDTTKTIDPEIEITIGGSYRRGAKTSGD 654
Query: 376 LDVVIMHPDRKSHKG-------FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
+D++I KSH FLS VK L FL L H+ EG+ + G
Sbjct: 655 IDIII----SKSHTTQTTQLTPFLSSLVKSLTASHFLTAALAVP-HNNEGSK-----WHG 704
Query: 429 LCTYPGRELR-------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
C P RIDF + P L+ +TG+D+ NR +RLLA KG RL+
Sbjct: 705 CCVLPSSSSASHPPNPWRRIDFLLVPASEIGAALLYFTGDDIFNRSMRLLAGKKGMRLNQ 764
Query: 482 TGLFPATYGSGGKQG-------VRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
GL+ G K G V T ++ E+ +F+ LG PW EP ER L
Sbjct: 765 RGLYRDAMRGGMKSGKWETRNKVTDGTLVEGRDERAIFEALGVPWREPWERVL 817
>gi|429862634|gb|ELA37273.1| DNA polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 809
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 181/339 (53%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ ++ + Y + R +Y KAI +++ P K+ +A++ LPG+G+ + D
Sbjct: 474 NNRTIEVLQQMCDYYTRTNDTWRPIAYRKAITQLKRQPNKVSTAEEAIRLPGVGQRLADK 533
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LEH E + + F +++G+G A +G RTL DLK + LT
Sbjct: 534 IEEIVTTNRLQRLEHAESEPMDEILQTFLKIYGVGSVQASHWISQGFRTLGDLKQKAKLT 593
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q +G+ ++DD+ TRIPR EV+ + +++ ++ P V I+ GGSYRRG + GD+D
Sbjct: 594 ANQHVGIDHYDDLNTRIPRSEVKLLGAVVRSEAAKLDPAVQIIIGGSYRRGADNSGDVDF 653
Query: 379 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+I KS FL++ V+ L+ +FL L S +G+ + G C P
Sbjct: 654 LITKKRTKSTSDLISFLNELVRVLESQRFLVARLASSRDDGDGS-----KWHGCCVLPKI 708
Query: 435 --------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
R++ R+DF + P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 709 NGFNEKDYRKIWRRVDFLLVPETELGAALIYFTGNDIFNRSIRLLASKKGMRLNQRGLYK 768
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + ++ E+++F+ LG W EPHER
Sbjct: 769 DVMRGPSRVKMTEGELVEGQDERKIFEILGVKWREPHER 807
>gi|432099929|gb|ELK28823.1| DNA polymerase beta [Myotis davidii]
Length = 376
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 210/397 (52%), Gaps = 52/397 (13%)
Query: 158 APNSPMSSESLTNTLST--ASASPDF----SSHHITDPSLLY-----------NP-PDLN 199
+P SP++ S+T T S+ +PDF + T P+ +P P L+
Sbjct: 3 SPTSPLTGFSVTFTTSSFYPCLTPDFRGGTAFRPCTSPAFRVHVGSAQRSAGGDPLPSLS 62
Query: 200 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 259
+ L+ Y D + KA VI K P KI+S + K LPG+G + + I
Sbjct: 63 RQFLPF---LVASYTGYVRDSK-----KAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKI 114
Query: 260 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLT 318
E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED L
Sbjct: 115 DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNEDKLN 174
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD+DV
Sbjct: 175 HHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDV 234
Query: 379 VIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP- 433
++ HP S L + V++L+++ F+ + L G + G+C P
Sbjct: 235 LLTHPSFTSESNKQPKLLHRVVEQLQKVCFITDTL----------SKGETKFMGVCQLPS 284
Query: 434 ---GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 489
G+E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 285 KNDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTINEYTIRPL-- 342
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 343 ---GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 375
>gi|55845900|gb|AAV66968.1| DNA polymerase beta [Canis lupus familiaris]
Length = 318
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 180/313 (57%), Gaps = 26/313 (8%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 81 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 140
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 398
M+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V++
Sbjct: 141 MQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQ 200
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDFKVYPRDIYAF 453
L+++ F+ + L G + G+C P +E H RID ++ P+D Y
Sbjct: 201 LQKVHFITDTL----------SKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYC 250
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 513
G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+EK++FD
Sbjct: 251 GVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFD 304
Query: 514 FLGFPWLEPHERN 526
++ + + EP +R+
Sbjct: 305 YIQWKYREPKDRS 317
>gi|301765968|ref|XP_002918406.1| PREDICTED: DNA polymerase beta-like [Ailuropoda melanoleuca]
Length = 335
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 191/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+ G S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFXXGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTL----------SKGDTKFMGVCQ 240
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 241 LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|118101412|ref|XP_424407.2| PREDICTED: DNA polymerase beta [Gallus gallus]
Length = 335
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 189/340 (55%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N R + + +Y KA VI + P +I S + K L G+G +
Sbjct: 11 LNQGITDFLMELANYERNVSRAIHKYNAYRKAASVISRYPSRIRSGAEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+DL KNE
Sbjct: 71 EKIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRKNEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
LTH QR+GLKYF+D + RIPR E+ QM+ ++ K + V P I GS+RRG S GD
Sbjct: 131 KLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEVKNVDPNYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + +++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPTFTSESSKQSKLLHQVIEQLEKVHFVTDVL----------SKGDTKFMGVCQ 240
Query: 432 YPGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E RID ++ P+D Y G++ +TG+D+ N+ +R A G+ +++ + P
Sbjct: 241 LPNKEDGTLYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEMGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A +L + EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEALPVECEKDIFDYIQWKYREPKDRS 334
>gi|330800723|ref|XP_003288383.1| hypothetical protein DICPUDRAFT_33968 [Dictyostelium purpureum]
gi|325081565|gb|EGC35076.1| hypothetical protein DICPUDRAFT_33968 [Dictyostelium purpureum]
Length = 370
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 29/342 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK +T+I +L + G+ R +Y KA+ I+ P +I+S + + L G+G +
Sbjct: 45 NKQLTDILTELSVFEKNKGQVHRFTAYRKAVLSIKAYPHEIKSGLEAQKLDGVGAKIAKK 104
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
I EI+ TG L KL+ +DE + I+ V GIGP A+ L E+G +T+DDLK +++L
Sbjct: 105 IDEILKTGDLKKLKSQNQDETLTAINQLSRVTGIGPQKAKSLVEEGIKTIDDLKKIKNTL 164
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
TH Q++GLKYF + + R+PR E+E E+L+ + + P +I GSYRRG S GD+D
Sbjct: 165 THHQQIGLKYFSEFEQRVPRKEIEVFEKLVSNSLFSIDPNIISQVCGSYRRGLESSGDID 224
Query: 378 VVIMHP-------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
++I HP D+K + K V+ LK+ L +DL G Y G+C
Sbjct: 225 ILISHPNFTLEMKDKKKTFNIIEKLVESLKKKHILIDDLSL----------GPLKYMGVC 274
Query: 431 TYPGRELRH-----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
E+ RIDFK+ P + Y FGL+ TG+D NR++R +A +G+ L + +
Sbjct: 275 KLVSTEISEQHIARRIDFKLIPYESYYFGLLHNTGSDEFNRQMRGIALKQGFTLSEYSIN 334
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ +GV+ T + ++EKE+FD +G + P++RNL
Sbjct: 335 KLS------KGVKNETPILVNSEKEIFDIIGMEYYPPNKRNL 370
>gi|426256602|ref|XP_004021927.1| PREDICTED: DNA polymerase beta [Ovis aries]
Length = 328
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 181/313 (57%), Gaps = 26/313 (8%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 31 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 90
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 91 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 150
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 398
M+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V++
Sbjct: 151 MQDIVLSEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQ 210
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP----GRELRH-RIDFKVYPRDIYAF 453
L++++F+ + L G + G+C P +E H RID ++ P+D Y
Sbjct: 211 LQKVRFITDTL----------SKGETKFMGVCQLPRKNDEKEYPHRRIDIRLIPKDQYYC 260
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 513
G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+EK++FD
Sbjct: 261 GVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFD 314
Query: 514 FLGFPWLEPHERN 526
++ + + EP +R+
Sbjct: 315 YIQWKYREPKDRS 327
>gi|327287112|ref|XP_003228273.1| PREDICTED: DNA polymerase beta-like [Anolis carolinensis]
Length = 335
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 188/339 (55%), Gaps = 27/339 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NDGITDFLTELANYERNVNRAIHKYNAYRKAASVISKYPSKIKSGAEAKKLDGVGAKIAE 71
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 316
I E ++TGKL KLE +D+ +I+ V GIGPA A+K ++G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPAAARKFVDEGIKTLEDLKKNEHK 131
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H Q++GLKYF+D + RIPR+E+ +M+ ++ +EV I GS+RRG S GD+
Sbjct: 132 LNHHQQIGLKYFEDFEKRIPRNEMLEMQEIVLNEVKEVDSRYIATVCGSFRRGAESSGDM 191
Query: 377 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+++ HPD S L + V +L++ +F+ + L G + G+C
Sbjct: 192 DILLTHPDFTSESSKQPKLLHQVVDQLEKARFVTDTL----------SKGDTKFMGVCQL 241
Query: 433 PGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
P +E RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P
Sbjct: 242 PSKEDGTDYPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPV 301
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 302 -----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|392587221|gb|EIW76555.1| hypothetical protein CONPUDRAFT_63239 [Coniophora puteana
RWD-64-598 SS2]
Length = 683
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 191/339 (56%), Gaps = 17/339 (5%)
Query: 199 NKNITEIFGKLINIYRALG--EDR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
N+++ + +L+ +++A +DR R FSY K I ++ P +I+S Q + + G+G+
Sbjct: 347 NQDVVDALEQLMELHKAKSSEDDRWRVFSYGKCIRALKNHPKRIKSLSQARAIRGVGEKT 406
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I EI+ TG L +++ +E E V +F ++G+G TA Y G RTLDD+K
Sbjct: 407 AMKIMEIIETGGLKRIQ-YENTEDVEATKIFQGIYGVGRNTAFAWYANGCRTLDDIKMCK 465
Query: 316 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
++ Q +G+K++DDI TRIPR EV+++ ++ ++ P++ I GS+RRGKA
Sbjct: 466 GGIKVSAVQEIGIKFYDDINTRIPRAEVQEIFDRIKSVALDMDPKLFIEVMGSFRRGKAD 525
Query: 373 CGDLDVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
CGD+DV+I D K+H GFLSK + +L E+ L EDL + ++ +D + Y GLC
Sbjct: 526 CGDIDVLITRDTADGKTHAGFLSKLLDELHELDILTEDL---SVPDDYSDLEL-CYRGLC 581
Query: 431 TYPG--RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
PG R RID P + L+ +TG+D+ NR +R+ A GY L+ GL+
Sbjct: 582 MLPGLPGARRRRIDILCVPWECRGGALLYYTGDDIFNRAMRMKANVLGYSLNQRGLYAGV 641
Query: 489 YGSGGKQGVR--ARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ V+ + + +TE+E+F LG PW EPHER
Sbjct: 642 VRDPKDRRVKLHGGSIIASETEEEIFKVLGVPWQEPHER 680
>gi|134076871|emb|CAK45280.1| unnamed protein product [Aspergillus niger]
Length = 705
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 179/342 (52%), Gaps = 17/342 (4%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 369 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 428
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 429 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 488
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 489 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 548
Query: 374 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
GD+D++I PD + + V KL + FL+ L S+ S +G+ + G C
Sbjct: 549 GDIDLLITKPDAEIDHIRTIMMGSVVPKLLKQGFLQTSLA-SSSSRDGS-----KWHGAC 602
Query: 431 TYPG-------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
T P R R RID P LI +TGND+ NR +RLLA KG RL+ G
Sbjct: 603 TLPDNDEDRITRPWR-RIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRG 661
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ + + L+ E+ +FD LG PW P R
Sbjct: 662 LYTDVLRGPQRVKINEGRLLEGHDERRIFDILGVPWRPPEHR 703
>gi|403339784|gb|EJY69154.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 432
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 187/335 (55%), Gaps = 17/335 (5%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
LN I E +L Y+ L + R + Y +A+ + + I S DQ+K +P IG+ +
Sbjct: 110 LNNEIAEQLDRLFKYYQTLKDKGRMWGYKRAVTQVRSIKEPIYSLDQLKDVPNIGEGILK 169
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS- 316
++E V G + + E + DEK++T+ LF +VWGIGP+ AQ+L++K R+++DL+N S
Sbjct: 170 KLREYVAEGSIKRFEFIDTDEKIKTLQLFEQVWGIGPSKAQELWDKKMRSIEDLRNHQSL 229
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP--EVI--ILCGGSYRRGKAS 372
LT Q++GLKYF+D +IPR EV ++ +++ +V+P E I I GSYRRG+
Sbjct: 230 LTSMQKIGLKYFEDFNEKIPREEVTKLLEKVREISYKVIPMGEKILKIEACGSYRRGRQL 289
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
CGD+DV++ D + G K V L++ FL+E L +G +G + Y G+C
Sbjct: 290 CGDIDVLVTRTDGEPIHGLNEKIVVSLEKEGFLKERL---GDLRKGA-TGHEGYQGICQL 345
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
+ RID KVYP D Y + L+ +TG+ N +R A +GY L D G+
Sbjct: 346 SPKHKIRRIDLKVYPSDQYGYALLYFTGSGNFNVDMRTQALKQGYTLSDHGMH------- 398
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
K G + S+ TE+EVF LG + P+ER++
Sbjct: 399 -KIGQKNGKSIPALTEEEVFKALGLEYKAPNERDI 432
>gi|350629528|gb|EHA17901.1| hypothetical protein ASPNIDRAFT_176678 [Aspergillus niger ATCC
1015]
Length = 708
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 179/342 (52%), Gaps = 17/342 (4%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 372 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 431
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 432 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 491
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 492 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 551
Query: 374 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
GD+D++I PD + + V KL + FL+ L S+ S +G+ + G C
Sbjct: 552 GDIDLLITKPDAEIDHIRTIMMGSVVPKLLKQGFLQTSLA-SSSSRDGS-----KWHGAC 605
Query: 431 TYPG-------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
T P R R RID P LI +TGND+ NR +RLLA KG RL+ G
Sbjct: 606 TLPDNDEDRITRPWR-RIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRG 664
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ + + L+ E+ +FD LG PW P R
Sbjct: 665 LYTDVLRGPQRVKINEGRLLEGHDERRIFDILGVPWRPPEHR 706
>gi|317030862|ref|XP_001392360.2| DNA polymerase POL4 [Aspergillus niger CBS 513.88]
Length = 708
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 179/342 (52%), Gaps = 17/342 (4%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 372 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 431
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 432 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 491
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 492 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 551
Query: 374 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
GD+D++I PD + + V KL + FL+ L S+ S +G+ + G C
Sbjct: 552 GDIDLLITKPDAEIDHIRTIMMGSVVPKLLKQGFLQTSLA-SSSSRDGS-----KWHGAC 605
Query: 431 TYPG-------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
T P R R RID P LI +TGND+ NR +RLLA KG RL+ G
Sbjct: 606 TLPDNDEDRITRPWR-RIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRG 664
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ + + L+ E+ +FD LG PW P R
Sbjct: 665 LYTDVLRGPQRVKINEGRLLEGHDERRIFDILGVPWRPPEHR 706
>gi|348557620|ref|XP_003464617.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase beta-like [Cavia
porcellus]
Length = 335
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLMELANFEKNVSQAIHKYNAYRKAASVIXKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLTEVKKLDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ H + S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHANFTSESNKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 432 YP----GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A +G+ +++ + P
Sbjct: 241 LPIKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEQGFTINEYTIRP 300
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 L-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|346974983|gb|EGY18435.1| DNA polymerase lambda [Verticillium dahliae VdLs.17]
Length = 815
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 183/359 (50%), Gaps = 32/359 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + R +Y K I ++++ KI +A + LPG+G + D
Sbjct: 455 NARTIEMLQHMADYYGRINDTWRPIAYRKVISLLKRQTRKIATAAEAIRLPGVGARLADK 514
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT +L +LEH E+D T+ F ++G+G A A + +GHRTLDDL+ LT
Sbjct: 515 IEEIVTTDRLRRLEHAERDPADETLQQFVRIYGVGNAQASRWIAQGHRTLDDLRAGAVLT 574
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G+ ++DD+ TRIPR EVE + +++ A + P+V ++ GGSYRRG AS GD+D+
Sbjct: 575 ANQRIGIDHYDDLNTRIPRREVEALAAVVRSAAAALDPDVELIVGGSYRRGAASSGDIDL 634
Query: 379 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFST---------------------- 413
++ S + FL++ + L+ FL L S
Sbjct: 635 IVTREGTTSARELLPFLAQLTRTLEARGFLVAALATSRDDDAGGSKWHGCCVLPAPDAAR 694
Query: 414 -HSEEGTDSGVDTYFGL------CTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNR 466
HS EG GV + G + P R + RID V P L+ +TGND+ NR
Sbjct: 695 LHSSEGEGVGVGSERGFDPGAPSPSPPYRPVWRRIDLLVVPAAELGAALLYFTGNDIFNR 754
Query: 467 RLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+RLLA KG RL+ GL+ G+ V L+ E+ +F L W EPHER
Sbjct: 755 SMRLLAARKGMRLNQRGLYRDVLRGPGRARVTDGALLEGRDERRIFALLDVTWREPHER 813
>gi|49257724|gb|AAH74537.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis]
Length = 334
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 189/339 (55%), Gaps = 26/339 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPSKIKSGTEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 315
+ I E + TGKL KLE +D+ +I+ V GIGPA A+KL ++G +TLDDL+ NE
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKLVDEGIKTLDDLRNNEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYFDD + RI R E+ QM+ + + + P+ I GS+RRG S GD
Sbjct: 131 KLNHHQKIGLKYFDDFEKRITRKEMIQMQEKVIDRIKILDPQYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HPD S L + V+ L+E +F+ + L+ G + G+C
Sbjct: 191 MDVLLTHPDFTSESAKQPHLLRQVVQCLEECEFITDTLV----------KGDTKFMGVCQ 240
Query: 432 YPG---RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
P E H R+D ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P
Sbjct: 241 LPCEGDEEHPHRRLDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTLNEYTLRPL 300
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G G+ A L D+EK++FD++ + + EP +R+
Sbjct: 301 -----GVTGI-AGEPLPIDSEKDIFDYIQWKYREPKDRS 333
>gi|452987535|gb|EME87290.1| hypothetical protein MYCFIDRAFT_1485, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 563
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/330 (33%), Positives = 177/330 (53%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ I ++ + Y LG++ R +Y KAI + P K+ + +Q LP +G + +
Sbjct: 238 NEATINILQQMADYYGQLGDEWRIRAYRKAIATLRNHPVKVSTKEQAGALPNVGPRLAEK 297
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T +L +L++ + + + + + F V+G G A + E+G+ TLD+L + LT
Sbjct: 298 IEEIAFTNRLRRLDNAKAEPRDQVLQTFMGVYGAGLKKATEWVEQGYTTLDELMEKAELT 357
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G+++++D KTRIPR EV + ++++A E+ P ++ GGSYRRG A+ GD+D
Sbjct: 358 ENQRIGIEHYEDFKTRIPRAEVAEHGSIVRRALHEIDPAFEVIIGGSYRRGAATSGDIDC 417
Query: 379 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I PD L + V +L KFL L ++ D G + G PG
Sbjct: 418 LITRPDTGPDHLRNIVLGQLVPRLTAAKFLVASLAITSR-----DDG-SKWHGASCLPGS 471
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
++ R+D + P D L+ WTGND+ NR LRLLA +KG RL+ GL+ +
Sbjct: 472 KIWRRLDLLLVPSDELGAALLYWTGNDIFNRSLRLLASTKGLRLNQRGLYKDVLRGKARV 531
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ T ++ EK++F LG PW P R
Sbjct: 532 KLTDGTLVEGKDEKKIFAALGVPWRPPEHR 561
>gi|395329013|gb|EJF61402.1| hypothetical protein DICSQDRAFT_60488 [Dichomitus squalens LYAD-421
SS1]
Length = 787
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 176/316 (55%), Gaps = 12/316 (3%)
Query: 217 GEDRR--SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
GED R + KAI + + P +I + ++ L G+G+ I EI+ TG L +++ +
Sbjct: 474 GEDDRWRVYGLNKAIAALRRCPTRIRTLEEAMKLNGVGEKTARKIIEIIQTGDLMRIQ-Y 532
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDI 331
E E ++ + F ++G+G TA+ L+ G RTL+D+ K L+H+Q +GL+Y+ DI
Sbjct: 533 ETTEDIKAVKEFTGIYGVGANTARTLFNNGCRTLEDIAARKGGVKLSHAQEIGLRYYRDI 592
Query: 332 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP--DRKSHK 389
TRIPR EV+++ ++ ++ P++ I GS+RRGK++CGD+D++I P D K+H+
Sbjct: 593 NTRIPRAEVQEIYDKIKGEALKLDPKLFIQVMGSFRRGKSTCGDIDILISRPVDDGKTHQ 652
Query: 390 GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRD 449
G L + + +L + EDL + E+ Y GLC LR RIDF P
Sbjct: 653 GILRRLLAELHRQDIITEDLCLPDNFEDLEL----VYRGLCRKGPGSLRRRIDFLTVPWV 708
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 509
L+ +TG+D+ NR LRL A GY L+ GL+ + +Q V + ++E+
Sbjct: 709 SRGAALLYYTGDDIFNRSLRLKANKMGYSLNQRGLYADVIRNKDRQKVTEGVLVASESER 768
Query: 510 EVFDFLGFPWLEPHER 525
E+ D LG PW EPHER
Sbjct: 769 EILDILGVPWQEPHER 784
>gi|367019770|ref|XP_003659170.1| hypothetical protein MYCTH_76690 [Myceliophthora thermophila ATCC
42464]
gi|347006437|gb|AEO53925.1| hypothetical protein MYCTH_76690 [Myceliophthora thermophila ATCC
42464]
Length = 781
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 170/330 (51%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N + EI K+ + Y + + R+ +Y KAI + + P +I + D+ LP IG+ +
Sbjct: 456 NAHTIEILQKMCDYYARVNDTWRTLAYRKAIATLRRQPTRITTEDEAFRLPNIGRRLAAK 515
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T +L +LE+ + R + LF V+ +G + A K +G+RTLDDL+ + LT
Sbjct: 516 IEEIACTNRLRRLEYANDEPLDRILELFLNVYDVGLSRANKWIAQGYRTLDDLRLKADLT 575
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G+ ++DD+ +RIPR EV + +++ + P V +L GGSYRRG S GD+D+
Sbjct: 576 PNQRIGVDHYDDLNSRIPRAEVAALFAYVRREAALLDPRVELLVGGSYRRGAESSGDVDI 635
Query: 379 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
++ S FL + + L FL L G D + G C +
Sbjct: 636 IVTRKGTSSSAELVPFLEELIAVLTRKGFLVATLAALHAQRPGKDGPGSKWHGCCVW--- 692
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
RIDF + P Y LI +TGND+ NR +RLLA KG RL+ GL+ +
Sbjct: 693 ---RRIDFLLVPESEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYKEVMRGKNRG 749
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
V L+ EK +F+ LG W EP ER
Sbjct: 750 KVTEGELLEGRDEKRIFELLGVKWREPWER 779
>gi|118380982|ref|XP_001023653.1| Helix-hairpin-helix motif family protein [Tetrahymena thermophila]
gi|89305420|gb|EAS03408.1| Helix-hairpin-helix motif family protein [Tetrahymena thermophila
SB210]
Length = 832
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 196/339 (57%), Gaps = 17/339 (5%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ NK ITE KL+ IY+ + RS +Y KA+ +I+ L F+I+S V+ + G+G+ +
Sbjct: 503 NFNKLITEELEKLLKIYQQEKDIGRSIAYRKAVGIIKSLDFQIKSVKDVQKINGLGEKTK 562
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 315
+ I+EI+ TG+ + + + E+ + I L +VWGIGP+TA +LYE+ +T+ +L+ N+
Sbjct: 563 EKIKEILETGQCQRAQILTQSERNQAIELLSQVWGIGPSTASQLYERNIKTIAELRQNQH 622
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-----IILCGGSYRRGK 370
L +Q++GL+YF+D+ R+PR E + + K +E+ PE II C GSYRR
Sbjct: 623 LLNKNQKIGLQYFEDLVERMPREEATLIVNEVIKGFKELYPEEHDRYDIIAC-GSYRR-- 679
Query: 371 ASCGDLDVVIMHPDRKSH--KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
+CGD+D++I D + + K + + KL++ L E L F ++ G+ +TY G
Sbjct: 680 ETCGDVDILICRKDGEENKPKKLMINLICKLEQDGLLIEHLQFPRPNQYGS----ETYMG 735
Query: 429 LCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
+ + R RID K YP+D+Y + L+ +TG+D NR +RL A KGY L D GL+ A
Sbjct: 736 IGKLKDGKHR-RIDLKYYPKDLYGYALLYFTGSDYFNRSMRLFARKKGYSLSDHGLY-AV 793
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
K + + ++ TE+EVF L + P+ R++
Sbjct: 794 NRIDNKTKITSSLAIPCYTEEEVFAALNLEYKPPYMRSV 832
>gi|126303417|ref|XP_001373104.1| PREDICTED: DNA polymerase beta [Monodelphis domestica]
Length = 335
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 191/344 (55%), Gaps = 35/344 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT+ +L N R + + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNAGITDFLTELANYERNVNQAIHKYNAYRKAASVIAKYPTKIKSGAEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E ++TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNE+
Sbjct: 71 EKIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEN 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GL+YFDD + RIPR E+ QM+ ++ ++V P+ I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLRYFDDFEKRIPREEMLQMQDIVLNEVKKVDPKYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDILLTHPSFTSESAKQPKLLHQVVEQLQKVHFITDTL----------SKGDTKFMGVCQ 240
Query: 432 ---------YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482
YP R RID ++ P+D Y G++ +TG+D+ N+ +R A G+ +++
Sbjct: 241 LSSEDDEDPYPYR----RIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTINEY 296
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ P G GV A L D+EK++FD++ + + EP +R+
Sbjct: 297 TIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|413952551|gb|AFW85200.1| hypothetical protein ZEAMMB73_545880 [Zea mays]
Length = 272
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 165/282 (58%), Gaps = 51/282 (18%)
Query: 36 LQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEALLQQ-----------SVIRYQWL 80
+Q+W+Q+LVQMG V EK +K V HVLAMD +ALL++ SV+ ++W+
Sbjct: 1 MQVWKQRLVQMGGRVVEKPTKGELAGVNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWI 60
Query: 81 EDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE 140
E+ L+ GE++ ++ ++ E E + GN + S K+ K S+E
Sbjct: 61 EECLKSGERLP--IHNFAINYEKEFKPKNAVC----TGNLVA---SRPSKRTKMSSEYPG 111
Query: 141 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD---------------FSSHH 185
Q S GD E + P P +S + S+A P+ SH
Sbjct: 112 DHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQPNQYASSQSSSADSKDTIGSHG 168
Query: 186 I--------TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 237
PS+ Y P DLNKNIT+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 169 TFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPF 227
Query: 238 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
KIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE DEK
Sbjct: 228 KIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFENDEK 269
>gi|293334963|ref|NP_001169410.1| uncharacterized protein LOC100383279 [Zea mays]
gi|224029181|gb|ACN33666.1| unknown [Zea mays]
Length = 272
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 165/282 (58%), Gaps = 51/282 (18%)
Query: 36 LQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEALLQQ-----------SVIRYQWL 80
+Q+W+Q+LVQMG V EK +K V HVLAMD +ALL++ SV+ ++W+
Sbjct: 1 MQVWKQRLVQMGGRVVEKPTKGEPAGVNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWI 60
Query: 81 EDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE 140
E+ L+ GE++ ++ ++ E E + GN + S K+ K S+E
Sbjct: 61 EECLKSGERLP--IHNFAINYEKEFKPKNAVC----TGNLVA---SRPSKRTKMSSEYPG 111
Query: 141 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD---------------FSSHH 185
Q S GD E + P P +S + S+A P+ SH
Sbjct: 112 DHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQPNQYASSQSSSADSKDTIGSHG 168
Query: 186 I--------TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 237
PS+ Y P DLNKNIT+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 169 TFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPF 227
Query: 238 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
KIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE DEK
Sbjct: 228 KIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFENDEK 269
>gi|325185752|emb|CCA20232.1| DNA polymerase lambdalike protein putative [Albugo laibachii Nc14]
Length = 621
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 179/333 (53%), Gaps = 8/333 (2%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+LN ++T +LI + R SY K + ++ + ++ + ++GL M
Sbjct: 275 NLNSHLTGPLEELIEFLHIEKDQWRVNSYKKVVGSLKVMQVRLSTVKDIQGLWWAKGRMY 334
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
+ E++ TG++ KLE ++ +++T+ F +WG+GP TA KLY+ G RTL DL+ S
Sbjct: 335 SRVAELLETGRMEKLEAKRRNPRLQTMLSFARIWGVGPTTAIKLYDLGFRTLADLEEAGS 394
Query: 317 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L+ QR+GL+++DD +IPR EV+Q+E ++ ++LP + GSYRRGK G
Sbjct: 395 SVLSQQQRIGLRHYDDFLKKIPREEVKQIESIVVDEVHQILPRANAMACGSYRRGKEISG 454
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
D D++I PD + G L + + +L+ F+ +DL + G D+Y G+C
Sbjct: 455 DCDILITDPD-EEECGLLPELLVRLRHKNFITDDLTQVSDHHMGR---CDSYMGVCRVNE 510
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
R+D KVYPR Y F L+ +TG+D NR +RL A+ +GY L D L P SG +
Sbjct: 511 HLPHRRLDIKVYPRRFYPFALLYFTGSDHFNRSMRLYAKKRGYSLSDRFLKPVMRASGHQ 570
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ +K E E+F LG + +P ERN
Sbjct: 571 --IDIGDFVKCTNEAEIFIALGLEYKDPLERNC 601
>gi|314932539|gb|ADT64454.1| DNA polymerase beta [Ailurus fulgens]
Length = 313
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 185/329 (56%), Gaps = 27/329 (8%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 1 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 60
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 61 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 120
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 121 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 180
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 181 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 230
Query: 432 YPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 231 LPSKNDEKECPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRP 290
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
G GV A L D+EK++FD++
Sbjct: 291 L-----GVTGV-AGEPLPVDSEKDIFDYI 313
>gi|194373665|dbj|BAG56928.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 159/273 (58%), Gaps = 8/273 (2%)
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CG
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCG 118
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
D+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G Y G+C PG
Sbjct: 119 DVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPG 173
Query: 435 RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
RH R+D V P +A L+ +TG+ NR +R LA++KG L + L A +
Sbjct: 174 PGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTH 233
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
V L TEK+VF LG P+ EP ER+
Sbjct: 234 GCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 266
>gi|322699201|gb|EFY90965.1| DNA polymerase POL4, putative [Metarhizium acridum CQMa 102]
Length = 756
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 191/357 (53%), Gaps = 19/357 (5%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
F+ + N P N E+ + + Y + + R+ Y KAI +++ +I
Sbjct: 405 FACNQAGAQDAYQNNP--NSRTIEVLQSMASYYDRVNDHWRTTGYRKAIATLKRQATRIT 462
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ ++ LP IG+ + I+EIVTT KL +LE+ + D + +F +++G+G AQ+
Sbjct: 463 TEEEAFQLPHIGRRIAQKIEEIVTTNKLQRLEYAQDDPTDGALQIFLQIYGVGNKQAQQW 522
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
+G+RTL+D+K++ L SQR+G +++DD+ TRIPR EVE + ++++A + + +
Sbjct: 523 VCQGYRTLEDIKSKAKLNPSQRVGAEHYDDLNTRIPRREVEALGAVVRRAAARIDAQAEL 582
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ GGSYRRG AS D+D+++ D S + FL++ V+ L++ FL L S H+
Sbjct: 583 IIGGSYRRGAASSNDIDLIVTKLDTDSVAQLRPFLNELVRVLEKDGFLTARLA-SFHA-- 639
Query: 418 GTDSGVDTYFGLCTYPG---------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
G D + G C P R + RIDF + P LI +TGND+ NR +
Sbjct: 640 GGDGS--KWHGCCVLPKTKGINDEDYRPVWRRIDFLLVPASEMGGALIYFTGNDIFNRSM 697
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
RLLA KG RL+ GL+ G+ V ++ E+++FD LG W EPHER
Sbjct: 698 RLLASKKGMRLNQRGLYKDVIRGPGRVRVTEGELVEGRDERKIFDILGVKWREPHER 754
>gi|346320323|gb|EGX89924.1| DNA polymerase POL4 [Cordyceps militaris CM01]
Length = 796
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 182/332 (54%), Gaps = 18/332 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ +++ Y + R +Y KAI +++ P +I + ++ LPG+G +
Sbjct: 475 NARTVEVLQSMLSYYERTSDQWRVLAYRKAIATLKRQPARISTENEALRLPGVGARLAAK 534
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI TT +L +LEH ++D + + LF V G+GPA A + +G RTL+D++ + LT
Sbjct: 535 IAEIATTDRLRRLEHAQRDGSDQVLKLFLGVHGVGPALAARWAARGMRTLEDVRRQVKLT 594
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q++G++ + D+ T+IPR EVE + +++Q V V ++ GGSYRRG S GD+D+
Sbjct: 595 AGQQMGMERYADLNTKIPRDEVEALAKVVQDEAARVDDAVQLIVGGSYRRGAPSSGDVDM 654
Query: 379 VIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP- 433
+I P +H+ FL + V++L++ F I +T + +G+ + G C P
Sbjct: 655 IISKPS-TTHRSELLPFLQELVRRLRDAGF-----IVATLAADGS-----IWQGCCVLPR 703
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
G + R+D + P LI +TG+DV NR +RLLA KG++L+ GL+ G G
Sbjct: 704 GDGVWRRMDMLLVPAAEMGAALIYFTGDDVFNRSMRLLARKKGWKLNQKGLWKRDGGIGM 763
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ G L+ E+ +F+ LG W EP +R
Sbjct: 764 ETG--QEDLLEGRCERRIFELLGVTWREPTQR 793
>gi|374258478|gb|AEZ01785.1| DNA polymerase beta, partial [Pogona vitticeps]
Length = 335
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 27/339 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLSELANYERNVNRAIHKYNAYRKAASVISKYPTKIKSGAEAKKLDGVGAKIAE 71
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 316
I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+ LK NE
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFVEEGIKTLEGLKKNEHK 131
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H QR+GLKYF+D + RIPR E+ +M+ ++ + +EV P I GS+RRG S GD+
Sbjct: 132 LNHHQRIGLKYFEDFEKRIPREEMLEMQEIVLREVKEVDPRYIATVCGSFRRGAESSGDM 191
Query: 377 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+++ HPD S L + V++L+++ F+ + L G + G+C
Sbjct: 192 DILLTHPDFTSESSKQPKLLHQIVEQLEKIHFVTDTL----------SKGDTKFMGVCRL 241
Query: 433 PGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
P E RID ++ P+D Y G++ +TG+D+ N+ +R A G+ + + P
Sbjct: 242 PSXEGGTDXPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTXHEYTIRPL 301
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 302 -----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|322708747|gb|EFZ00324.1| DNA polymerase POL4, putative [Metarhizium anisopliae ARSEF 23]
Length = 756
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 188/357 (52%), Gaps = 19/357 (5%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
F+ + N P N E+ + N Y + + R+ Y KAI +++ +I
Sbjct: 405 FACNQAGAQDAFQNNP--NSRTIEVLQSMANYYDRVNDHWRTTGYRKAITTLKRQATRIT 462
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
++ LP IG+ + I+EIVTT KL +LE+ + + + +F ++G+G AQ+
Sbjct: 463 IEEEAFQLPHIGRRIAQKIEEIVTTNKLQRLEYAQDEPMDGALQVFLRIYGVGNKQAQQW 522
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
+G+RTL+D+K++ L SQR+G++++DD+ TRIPR EVE + +++A + + +
Sbjct: 523 VSQGYRTLEDIKSKAKLNPSQRVGVEHYDDLNTRIPRREVEALGAFVRRAAARIDAQAEL 582
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ GGSYRRG S GD+D ++ D +S + FL + V+ L++ FL L S H+
Sbjct: 583 IIGGSYRRGSTSSGDIDFIVTKLDTESVAQLRPFLDELVRALEKDGFLTARLA-SFHA-- 639
Query: 418 GTDSGVDTYFGLCTYPG---------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
G D + G C P R + RIDF + P LI +TGND+ NR +
Sbjct: 640 GGDGS--KWHGCCVLPKTKGINDRDYRPVWRRIDFLLVPASEMGGALIYFTGNDIFNRSM 697
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
RLLA KG RL+ GL+ G+ V ++ E+++FD LG W EPHER
Sbjct: 698 RLLASKKGMRLNQRGLYKDVIRGPGRVRVTEGELVEGRDERKIFDILGVKWREPHER 754
>gi|154315176|ref|XP_001556911.1| hypothetical protein BC1G_04627 [Botryotinia fuckeliana B05.10]
Length = 353
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 183/353 (51%), Gaps = 31/353 (8%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
P+ N + +I ++ + Y +G+ R+ SY +A ++ P I + + +P IG+ +
Sbjct: 10 PNPNNHTIQILSRMKDYYERIGDQWRTRSYMQACGQLKNQPALIRTFSEAIVIPKIGQRI 69
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I+EIV TG+L +LEH E + + + LF ++G+ A K +GHR+ DLKN
Sbjct: 70 AKKIEEIVLTGRLRRLEHAEAEPDDKILKLFMGIYGVNYKLASKWISQGHRSFADLKNNI 129
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
LT SQ++G++ +DD++ RIPRHE+EQ+ + + + + PE+ I GGSYRRG + GD
Sbjct: 130 KLTPSQQIGIERYDDLQLRIPRHEIEQLGKFITDTTKTIDPEIEITIGGSYRRGAKTSGD 189
Query: 376 LDVVIMHPDRKSHKG-------FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
+D++I KSH FLS VK L FL L H+ EG+ + G
Sbjct: 190 IDIII----SKSHTTQTTQLTPFLSSLVKSLTASHFLTAALAVP-HNNEGSK-----WHG 239
Query: 429 LCTYPGRELR-------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
C P RIDF + P L+ +TG+D+ NR +RLLA KG RL+
Sbjct: 240 CCVLPSSSSASHPPNPWRRIDFLLVPASEIGAALLYFTGDDIFNRSMRLLAGKKGMRLNQ 299
Query: 482 TGLFPATYGSGGKQG-------VRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
GL+ G K G V T ++ E+ +F+ LG PW EP ER L
Sbjct: 300 RGLYRDAMRGGMKSGKWETRNKVTDGTLVEGRDERAIFEALGVPWREPWERVL 352
>gi|198413629|ref|XP_002128462.1| PREDICTED: similar to DNA polymerase beta [Ciona intestinalis]
Length = 326
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 179/317 (56%), Gaps = 20/317 (6%)
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
N+ RA +S +Y KA I + +I+S D+ + L G+G + D I E + TGKL K
Sbjct: 28 NVNRAF---HKSNAYRKAASSISRFGKEIKSGDEARKLEGVGAKISDKINEFLKTGKLEK 84
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFD 329
LE KDE + ISLF + G+GP A+KL E G ++L+DLKN + L H Q +G+KYFD
Sbjct: 85 LEKVRKDETSQIISLFTRISGVGPVAARKLMELGFKSLEDLKNNSEKLNHHQNIGVKYFD 144
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
D + RIPR E+E++E ++ V P+ + GSYRRG S GD+DV++ HP
Sbjct: 145 DFEKRIPREEMEKLEGMVVGKVTGVDPKFVATVCGSYRRGATSSGDIDVLVTHP------ 198
Query: 390 GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRD 449
F S+ K LK + ++ F T + D+ + G+C+ G + RID ++ P D
Sbjct: 199 CFTSETKKTLKLNEIVKSLGSFITDTLSMGDT---KFMGVCSLEG-TVHRRIDIRLIPHD 254
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 509
Y L+ +TG+D+ N+R+R A +G+ +++ + P GS G G L +E+
Sbjct: 255 QYFTSLLYFTGSDIFNKRMRTFALEQGFTINEYSVRPQ--GSTGVPG----NPLPVTSER 308
Query: 510 EVFDFLGFPWLEPHERN 526
++F+ +G +LEP +R+
Sbjct: 309 DIFEIIGMKYLEPSQRS 325
>gi|241846261|ref|XP_002415548.1| DNA polymerase lambda, putative [Ixodes scapularis]
gi|215509760|gb|EEC19213.1| DNA polymerase lambda, putative [Ixodes scapularis]
Length = 477
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 155/534 (29%), Positives = 248/534 (46%), Gaps = 86/534 (16%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ--- 71
+F G RV++V G+ R+Q++ +KLV+ GA + + K THV+ +D E L +
Sbjct: 1 MFVGSRVYVVPTGMGKPRVQLFLKKLVEHGAEIADS-EKDATHVVVAECVDRERLPKLID 59
Query: 72 -------QSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 124
++R W+ DSL+ S Y + D E + VL+ + + G
Sbjct: 60 SKKLSPSTRIVRSAWISDSLKNASLASTMPYALTCDLPHE-CGETVLNSDCAGPSGAEVG 118
Query: 125 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSH 184
+ H K+ P P E
Sbjct: 119 AADHGKE---------------------------PEEPARKECADV-------------- 137
Query: 185 HITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQ 244
P + N +I E ++ Y++ + R+ SY +AI +++ P +I S ++
Sbjct: 138 ----------PVNRNVHIIEQLQAMVETYQSTKDHWRALSYERAIMALKRHPTEITSWEE 187
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 304
+ LP +G+ + D I EIV GKL KLE F+ E++ + LF ++WG GP+TA++ +G
Sbjct: 188 ARSLPKVGERLADKIWEIVERGKLRKLEEFQGQERLTALQLFTKIWGSGPSTAERWVHQG 247
Query: 305 HRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 364
TL++L + LT Q++GLK+F D ++PR E ++ + KA + P + ++ G
Sbjct: 248 FTTLEELASSGQLTGQQKIGLKHFHDFLEKMPREEAGEIADTVAKAALSLQPGLTVVPCG 307
Query: 365 SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD 424
SYRRGK+ CGD+DV+I H + + G L++ ++ L+ FL + L GT GV
Sbjct: 308 SYRRGKSMCGDVDVLISHAELSALDGLLNRLLQLLRSSGFLTDGLAVP----HGT--GVP 361
Query: 425 T-YFGLCTY--PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
+ Y G+C PG + R R+D V P D A L+A+TG+ NR LRL A G L D
Sbjct: 362 SKYMGVCRIDRPGSKHR-RLDVFVIPPDELACALLAYTGSAHFNRSLRLRARRMGMALSD 420
Query: 482 TGLFPATY---GSGGKQGV------RARTSL-KFDTEKEVFDFLGFPWLEPHER 525
GL + G G G R+ SL TE + + LG + P +R
Sbjct: 421 RGLRQGVWRKVGIGSHTGFPRGAEKRSLGSLVSTPTEASILEHLGLSYRPPEQR 474
>gi|340923770|gb|EGS18673.1| DNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 792
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 177/336 (52%), Gaps = 9/336 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + RS +Y KAI + + +I +A++ LP IG +
Sbjct: 455 NARTIEVLQAMCDYYTRINDRWRSIAYRKAINTLRRQTVEICTAEEAARLPNIGSRLAAK 514
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV+T +L +L++ + + +S F +++G+G A A K +G RTL+DL+ + LT
Sbjct: 515 IEEIVSTNRLRRLDYANDEPTGQILSTFLKIYGVGNAQANKWITQGFRTLEDLRQKADLT 574
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++++DD+ +RIPR EVE + +++ + P + +L GGSYRRG S GD+D+
Sbjct: 575 PNQRIGIEHYDDLNSRIPRAEVEALFAYVRREAGAIDPNIELLVGGSYRRGADSSGDIDI 634
Query: 379 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP-- 433
+I +++ FL + L FL L G D + G C P
Sbjct: 635 IITKKGTRTYGELVHFLEDLITVLGRKGFLVATLAALHTHRPGKDGPGSKWHGCCVLPKE 694
Query: 434 --GRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 489
GR+ + RIDF + P Y LI +TGN++ NR +RLLA KG RL+ GL+
Sbjct: 695 AGGRDPLVWRRIDFLLVPETEYGAALIYFTGNEMFNRSMRLLAAKKGMRLNQRGLYKEVM 754
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G V +K EK +F+ LG W EP ER
Sbjct: 755 RKKGSVKVTGGELVKGRDEKRIFEILGVKWREPWER 790
>gi|242767987|ref|XP_002341478.1| DNA polymerase POL4, putative [Talaromyces stipitatus ATCC 10500]
gi|218724674|gb|EED24091.1| DNA polymerase POL4, putative [Talaromyces stipitatus ATCC 10500]
Length = 686
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 210/425 (49%), Gaps = 23/425 (5%)
Query: 114 IQGNGNTSSDGESSHRK---------KIKSSTE-DVEHFQAESKGDVETNALSEAPNSPM 163
IQ + +S +S RK K+K++ + ++ E+ DV SEA +S
Sbjct: 270 IQQEADAASSSQSDQRKPDALDKLILKVKAAGDLPLDEADDEAALDVTIECGSEAESSQK 329
Query: 164 SSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF 223
++ + + + T +F+ D + L N P N +I K+ Y ++ R+
Sbjct: 330 ATANPDSKVPTWQK--NFACMEKHDGNGLNNNP--NARTIDILQKMAVYYERTADNWRTT 385
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KAI + K KI + + +PGIG+ + D I+EIV+T L +L++ + R +
Sbjct: 386 AYRKAIAALRKQKSKICTKAEALAIPGIGQRLADKIEEIVSTDHLRRLDNINATPEDRAL 445
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 343
LF V+G G A A K KG+R+L+DL+N+ LT +Q++G++ ++D K RIPR EV
Sbjct: 446 QLFLGVYGAGFAQASKWVAKGYRSLEDLENKAELTANQKIGVERYNDFKQRIPRAEVALH 505
Query: 344 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLK 400
+++ A + P++ + GSYRRG A CGD+D++I + + V KL
Sbjct: 506 GNIIRAAVHALDPDMEAMVAGSYRRGAADCGDIDILITKSNGTIEYLRTLMIDNVVPKLM 565
Query: 401 EMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTG 460
E FL+ L ++ + + G PG +L RID P LI +TG
Sbjct: 566 EKGFLKASLATTSRGDG------PKWHGASALPGTDLWRRIDLLFVPGPEIGAALIYFTG 619
Query: 461 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 520
ND+ NR LRLLA KG RL+ GL+ + + T L+ EK +F+ LG PW
Sbjct: 620 NDIFNRSLRLLARKKGMRLNQHGLYKDVLRGPNQVKLTDGTLLEGQDEKRIFEILGVPWR 679
Query: 521 EPHER 525
P R
Sbjct: 680 PPEHR 684
>gi|63101370|gb|AAH95054.1| Polymerase (DNA directed), beta [Danio rerio]
gi|182890442|gb|AAI64375.1| Polb protein [Danio rerio]
Length = 339
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 185/344 (53%), Gaps = 31/344 (9%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HPD S L V L+ + F+ + L G + G+C
Sbjct: 191 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTL----------SKGDTKFMGVCQ 240
Query: 432 YP---------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482
L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++
Sbjct: 241 LQKEKEEEEEEEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEY 300
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ P G GV A L D+EK++FD++ + + EP +R+
Sbjct: 301 TIRPL-----GVTGV-AGEPLLVDSEKDIFDYIQWKYREPKDRS 338
>gi|449270885|gb|EMC81533.1| DNA polymerase beta, partial [Columba livia]
Length = 315
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 185/326 (56%), Gaps = 29/326 (8%)
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
N+ RA+ + +Y KA VI + P KI S + K L G+G + + I E ++TGKL K
Sbjct: 8 NVNRAI---HKYNAYRKAASVISRYPSKIRSGAEAKKLDGVGAKIAEKIDEFLSTGKLRK 64
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFD 329
LE +D+ +I+ V GIGPA A+K E+G +TL+DL+ NE LTH QR+GLKYF+
Sbjct: 65 LEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRRNEHKLTHHQRIGLKYFE 124
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP----DR 385
D + RIPR E+ QM+ ++ K +++ P I GS+RRG S GD+DV+I HP D
Sbjct: 125 DFEKRIPREEMLQMQEIVLKEVQKLDPNYIATVCGSFRRGAESSGDMDVLITHPSFTSDS 184
Query: 386 KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE-----LRHR 440
L + V++L+++ F+ + L G + G+C P +E R
Sbjct: 185 SKQSRLLHQVVEQLEKVHFVTDML----------SKGDTKFMGVCQLPDKEDGTAYPHRR 234
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
ID ++ P+D Y G++ +TG+D+ N+ +R A G+ +++ + P G GV A
Sbjct: 235 IDIRLVPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTINEYTIRPL-----GVTGV-AG 288
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHERN 526
+L ++E+++FD++ + + EP +R+
Sbjct: 289 EALPVESEEDIFDYIQWKYREPKDRS 314
>gi|193785442|dbj|BAG54595.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 158/273 (57%), Gaps = 8/273 (2%)
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CG
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCG 118
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
D+DV+I HPD SH+G S+ + L++ FL +DL+ + E G Y G+C PG
Sbjct: 119 DVDVLITHPDGWSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPG 173
Query: 435 RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
RH R+D V P +A L+ +TG+ NR +R LA++KG L + L A +
Sbjct: 174 PGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTH 233
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
V L TEK+VF LG P+ EP ER+
Sbjct: 234 GCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 266
>gi|348527146|ref|XP_003451080.1| PREDICTED: DNA polymerase beta-like [Oreochromis niloticus]
Length = 336
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 28/341 (8%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N + + + +Y KA I K P KI+S ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTISKYPHKIKSGEEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E + TGKL KLE D+ +I+ V GIGPA A+K E+G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVKTLEDLKKIEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYF++ + RIPR E+E+ME L+ E+V E I GSYRRG AS GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRAEMEKMETLILGELEKVDQEYIGTICGSYRRGAASSGD 190
Query: 376 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HP+ S L V L+ + F+ + L G + G+C
Sbjct: 191 IDILLTHPNYTSQTEKQPKLLHAVVDHLESIGFVTDTL----------SKGDTKFMGVCQ 240
Query: 432 YPGRE------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ +
Sbjct: 241 LQQNDEDEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIR 300
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G G G L D+EK++FD++ + + EP ER+
Sbjct: 301 PL--GVTGMAG----EPLLVDSEKDIFDYIQYKYREPKERS 335
>gi|358400608|gb|EHK49934.1| hypothetical protein TRIATDRAFT_51201 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 19/341 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ K+ + Y + + R+ +Y KAI +++ KI + ++ LP IG+ +
Sbjct: 325 NARTIEMLQKMNSYYERVNDHWRTLAYRKAIGTLKQQTVKITTEEEAYRLPSIGRRLAQK 384
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT KL +LE+ E++ + F +++G+G AQ+ +G RTLDD+K LT
Sbjct: 385 IEEIVTTDKLKRLEYAEEEPTNSALQTFLKIYGVGNKVAQQWIAQGWRTLDDIKQHVKLT 444
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
SQ +G++++DD+ TRIPR EV + ++++A ++ P V ++ GGSYRRG S D+D
Sbjct: 445 PSQMVGVEHYDDLNTRIPRKEVTALGEVVKRAAAKMDPMVQLIIGGSYRRGAESSHDIDF 504
Query: 379 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
++ P +S K FL+ V +L+ +FL L S +G+ + G C P
Sbjct: 505 IVTKPGTESVAHLKSFLNTLVAQLERDEFLVARLASSRAGSDGS-----KWHGCCVLPKI 559
Query: 435 ----------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
R + RIDF + P LI +TGND+ NR +RLLA KG RL+ GL
Sbjct: 560 KGLNDDDEEYRPIWRRIDFLLVPEVELGAALIYFTGNDIFNRSMRLLASKKGMRLNQHGL 619
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + V ++ E+ +F+ LG W EP ER
Sbjct: 620 YRDVLRGPDRVKVTEGELVERRDERRIFEILGVTWREPWER 660
>gi|51468008|ref|NP_001003879.1| DNA polymerase beta [Danio rerio]
gi|49619119|gb|AAT68144.1| DNA polymerase beta [Danio rerio]
gi|190337954|gb|AAI62397.1| Polymerase (DNA directed), beta [Danio rerio]
Length = 337
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 185/342 (54%), Gaps = 29/342 (8%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HPD S L V L+ + F+ + L G + G+C
Sbjct: 191 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTL----------SKGDTKFMGVCQ 240
Query: 432 YP-------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ +
Sbjct: 241 LQKEKEEEEEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTI 300
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+EK++F+++ + + EP +R+
Sbjct: 301 RPL-----GVTGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 336
>gi|77416689|sp|Q6DRD3.2|DPOLB_DANRE RecName: Full=DNA polymerase beta
Length = 336
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 185/342 (54%), Gaps = 29/342 (8%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 10 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 69
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 70 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 129
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 130 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 189
Query: 376 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HPD S L V L+ + F+ + L G + G+C
Sbjct: 190 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTL----------SKGDTKFMGVCQ 239
Query: 432 YP-------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ +
Sbjct: 240 LQKEKEEEEEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTI 299
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+EK++F+++ + + EP +R+
Sbjct: 300 RPL-----GVTGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 335
>gi|432873436|ref|XP_004072215.1| PREDICTED: DNA polymerase beta-like [Oryzias latipes]
Length = 338
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 185/342 (54%), Gaps = 30/342 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G + +
Sbjct: 12 NEGITDFLIELANYEKNVNRAIHKYNAYRKAASTISKYPSKIRNGEEAKKLDGVGAKIAE 71
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDS 316
I E + TGKL KLE D+ +I+ V GIGPA A+K +E+G +TLDDLK E
Sbjct: 72 KIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFEEGVKTLDDLKKVEHK 131
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H Q++GL+YF++ + RIPR E+EQME L+ E++ PE I GSYRRG AS GD+
Sbjct: 132 LNHHQKIGLRYFEEFEKRIPRAEMEQMEALIIAELEKIDPEYIGTICGSYRRGAASSGDI 191
Query: 377 DVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+++ HP+ S L V+ L+ + F+ + L G + G+C
Sbjct: 192 DILLTHPNYTSQTEKQPKLLHAVVEHLESIGFVTDTL----------SKGDTKFMGVCQL 241
Query: 433 PGRE--------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ +
Sbjct: 242 QQSNDDEDEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTLNEYTI 301
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+E+++F+++ + + EP +R+
Sbjct: 302 RPL-----GVTGV-AGEPLPVDSERDIFEYIQYKFKEPKDRS 337
>gi|396462710|ref|XP_003835966.1| hypothetical protein LEMA_P053070.1 [Leptosphaeria maculans JN3]
gi|312212518|emb|CBX92601.1| hypothetical protein LEMA_P053070.1 [Leptosphaeria maculans JN3]
Length = 794
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 134/403 (33%), Positives = 194/403 (48%), Gaps = 16/403 (3%)
Query: 137 EDVEHFQAESKGDVETNALSEAPNS--PMSSESLTNTLSTASASPD-----FSSHHITDP 189
+D E+F S+ D + + + P P +E + +S ASA D S+ DP
Sbjct: 392 DDDEYFSKVSERDTDDSGTDDEPTKAEPKLAEKFS-FVSKASALRDKGSLKLSAFQCMDP 450
Query: 190 SLL-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL 248
Y + N +I ++ Y + ++ R+ SY K I ++K KI +A Q L
Sbjct: 451 GASGYTSQNPNVRTIQILEEMCKHYDQMQDNWRTLSYRKCIATLKKQSIKITTAKQAIAL 510
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 308
P IG + D I+EIV T L KL++ D + LF V+G G A K + GHRTL
Sbjct: 511 PTIGHRLADKIEEIVLTDCLRKLDYTRNDPLDTVLRLFLGVYGAGLVQANKWIQAGHRTL 570
Query: 309 DDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
DL+++ LT Q++GL+++ D RIPR EVE ++ A + P+ + GSYRR
Sbjct: 571 ADLESKAKLTPCQKIGLQHYADFNARIPRAEVEAHANHVRSALRNINPDYEAITMGSYRR 630
Query: 369 GKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLI---FSTHSEEGTDSG 422
G A GD+D++I PD H + L FL+ L +HS T SG
Sbjct: 631 GAADSGDVDIIITCPDTPLSTIHSTVFDNLIPHLFTTHFLKASLAASNSHSHSHSTTPSG 690
Query: 423 VDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482
+ G PG + RID + P LI +TGNDV NR +RLLA +G RL+
Sbjct: 691 -SKWHGASCLPGSHIWRRIDLLLVPEPEMGAALIYFTGNDVFNRSVRLLARKRGMRLNQR 749
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GLF G Q + ++ E+ +F+ LG PW EP ER
Sbjct: 750 GLFRDVERGLGGQRLNEGVLVEGRCERRIFEVLGVPWREPGER 792
>gi|157423583|gb|AAI53576.1| Polymerase (DNA directed), beta [Danio rerio]
Length = 337
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 29/342 (8%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 376 LDVVIMHPD----RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HPD + L V L+ + F+ + L G + G+C
Sbjct: 191 IDILLTHPDFTFQSEKQPKLLHAVVDHLESIGFITDTL----------SKGDTKFMGVCQ 240
Query: 432 YP-------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ +
Sbjct: 241 LQKEKEEEEEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTI 300
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+EK++F+++ + + EP +R+
Sbjct: 301 RPL-----GVTGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 336
>gi|405955500|gb|EKC22593.1| DNA polymerase lambda [Crassostrea gigas]
Length = 208
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 131/193 (67%)
Query: 209 LINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKL 268
++ Y++ + R+F Y KAI V+ K P +I S ++ + LPG+G + D I EI +G+L
Sbjct: 1 MVKKYKSTSDQWRAFGYQKAIQVLRKHPTQISSWEEARALPGVGTRLADKIWEIAESGEL 60
Query: 269 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 328
KL F D+ ++ I LF VWG G TA++ +++G RTLDDL+ + LTH Q++GLK++
Sbjct: 61 RKLNEFNADKDIKVIELFTNVWGAGAHTARQWFQQGFRTLDDLRTKAKLTHQQKIGLKHY 120
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+DI R+PR E +E+++++A E + P VI C GSYRRGK +CGD+DV++ HPD KSH
Sbjct: 121 EDILDRMPRTEAAAIEQVVREAAEFLAPGVIAQCCGSYRRGKPTCGDVDVLLTHPDGKSH 180
Query: 389 KGFLSKYVKKLKE 401
KG SK + KLKE
Sbjct: 181 KGLFSKLLAKLKE 193
>gi|239613353|gb|EEQ90340.1| DNA polymerase POL4 [Ajellomyces dermatitidis ER-3]
Length = 717
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 204/406 (50%), Gaps = 21/406 (5%)
Query: 130 KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD----FSSHH 185
+K+ S EDV+ A + +V++N+ SEA + + ++ +P FS H
Sbjct: 321 EKVLSEEEDVD--TASTIDEVDSNSDSEAEKLNEAKKKKKKKKKRSTGNPQWQQTFSCMH 378
Query: 186 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 245
D + P N EI K+ Y + + R+ +Y KAI + K +I + +Q
Sbjct: 379 KHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWRTLAYRKAISALRKQKERIVTREQA 436
Query: 246 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 305
+PGIG+ + I+EIV T +L +LE + +S F ++G+G A A K ++G+
Sbjct: 437 VTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDVLLSQFLNIYGVGFAQASKWIQQGY 496
Query: 306 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 365
++LDDLK + SLT +Q++G++++DD RIPR EVE +++K V P V ++ GGS
Sbjct: 497 QSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVEAHGAIVKKLLFTVDPAVQVIIGGS 556
Query: 366 YRRGKASCGDLDVVIMHPDRKSHKGFLSKY----VKKLKEMKFLREDLIFSTHSEEGTDS 421
YRRG AS GD+D++I D + + + L + FL+ L E
Sbjct: 557 YRRGAASSGDIDLIITK-DGATQAEICALMTDIVIPALFQQNFLQASLAVGRRGESS--- 612
Query: 422 GVDTYFGLCTYPGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+ G C PG + + RIDF P D LI +TGND+ NR LRLLA KG L
Sbjct: 613 ---KWHGACALPGSKNPVWRRIDFLYVPGDEIGAALIYFTGNDIFNRSLRLLASKKGMCL 669
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ GLF + + + ++ EK +F+ LG PW P+ R
Sbjct: 670 NQRGLFTGIIRRENRVKLNSGRLIESRDEKRIFEILGVPWRPPNHR 715
>gi|224080955|ref|XP_002186553.1| PREDICTED: DNA polymerase beta-like [Taeniopygia guttata]
Length = 335
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 188/339 (55%), Gaps = 27/339 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+ IT+ +L N R + + +Y KA VI + P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLTELANYERNVNRAIHKYNAYRKAASVISRYPSKIQSGAEAKKLDGVGAKIAE 71
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDS 316
I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+DL+ E
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRKIEHK 131
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
LTH QR+GLKYF+D + RIPR E+ QM+ ++ K +++ P I GS+RRG S GD+
Sbjct: 132 LTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEIKKLDPNYIATVCGSFRRGAESSGDM 191
Query: 377 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 192 DVLLTHPSFTSESSKQSKLLHQVVEQLEKVHFVTDML----------SKGDTKFMGVCQL 241
Query: 433 PGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
P +E RID ++ P+D Y G++ +TG+D+ N+ +R A G+ +++
Sbjct: 242 PDKEDGTAYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEMGFTINE-----Y 296
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
T G GV A +L + EK++FD++ + + EP +R+
Sbjct: 297 TIRRLGVTGV-AGEALPVECEKDIFDYIQWKYREPKDRS 334
>gi|398411186|ref|XP_003856936.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
gi|339476821|gb|EGP91912.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
Length = 590
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 175/330 (53%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI +++ Y ++ RS +Y +AI V+ K P K+ + ++ LP +G+ +
Sbjct: 265 NLATIEILEQMVKYYTDTRDEWRSRAYRQAISVLRKHPTKVMTKEEALKLPKVGERLAAK 324
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T +L +L++ + + F V+G G A K ++G+ TLD+L LT
Sbjct: 325 IEEIAVTNRLRRLDNALAEPSDAILQTFMGVYGAGRVVATKWVDQGYTTLDELSKNPDLT 384
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+GL++++D +TRIPR EV Q ++ KA ++ P ++ GGSYRRG GD+D
Sbjct: 385 TNQRIGLEHYEDFQTRIPRAEVAQHGEVVLKALHKIDPTFEVIIGGSYRRGAKDSGDIDC 444
Query: 379 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I P+ S L + + +L+ KFL L +T ++G+ + G PG
Sbjct: 445 IITRPNTDSTHLRAVVLEQLIPQLESKKFLVASLA-ATDKDDGS-----KWHGASCLPGA 498
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID + P D LI +TGND+ NR +RLLA +KG RL+ GL+ T +
Sbjct: 499 TIWRRIDLLLVPSDELGAALIYFTGNDIFNRSMRLLASTKGMRLNQRGLYKDTMRGPKRV 558
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ T + EK +F+ LG PW PH R
Sbjct: 559 KITEGTLAEGKDEKRIFEILGVPWRPPHHR 588
>gi|212542803|ref|XP_002151556.1| DNA polymerase POL4, putative [Talaromyces marneffei ATCC 18224]
gi|210066463|gb|EEA20556.1| DNA polymerase POL4, putative [Talaromyces marneffei ATCC 18224]
Length = 628
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 176/332 (53%), Gaps = 9/332 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI K+ + Y + R+ +Y KAI + K KI + + +PGIG+ + D
Sbjct: 303 NAKTIEILQKMADYYDRTADTWRTMAYRKAIAALRKQKAKICTKAEALAIPGIGQRLADK 362
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV+T +L +LE+ + + + LF V+G G A A K KG+R+L+DLKN+ LT
Sbjct: 363 IEEIVSTDRLHRLENINWTPEDKALQLFLGVYGAGFAQASKWVAKGYRSLEDLKNKAELT 422
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q++G++ ++D + RIPR EV + +++A + P++ ++ GSYRRG A CGD+D+
Sbjct: 423 TNQKIGVERYNDFQQRIPRAEVAKHGESVREAVHAIDPDMEVMVTGSYRRGAADCGDIDI 482
Query: 379 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I + + V +L + FL+ L +T +G+ + G PG
Sbjct: 483 LITKTNGTIEYIRTLMMDNVVPELTKKGFLKASLA-TTSRGDGS-----KWHGASALPGT 536
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+L RID P + L+ +TGND+ NR +RLLA KG RL+ GL+ +
Sbjct: 537 DLWRRIDLLFVPGNEIGASLLYFTGNDIFNRSVRLLARKKGMRLNQHGLYKDVLRGPNQA 596
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ T L+ EK + + LG PW P RN
Sbjct: 597 KLTDGTLLEGRDEKRILEILGVPWRPPQHRNC 628
>gi|395507540|ref|XP_003758081.1| PREDICTED: DNA polymerase beta [Sarcophilus harrisii]
Length = 348
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 187/337 (55%), Gaps = 35/337 (10%)
Query: 205 IFGKLINIYRALGEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 263
+F +L N R + +S Y KA VI K P +I+S + K L G+G + + I E +
Sbjct: 31 LFSELANYERNVNRAIHKYSAYRKAASVIAKYPSQIKSGAEAKKLDGVGAKIAEKIDEFL 90
Query: 264 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQR 322
TGKL KLE +D+K +I+ V GIGP+ A+KL ++G +TL+DL KNE L H QR
Sbjct: 91 ATGKLRKLEKIRQDDKSSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNESKLNHHQR 150
Query: 323 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 382
+GL+YF+D + RIPR E+ QM+ ++ ++V + I GS+RRG S GD+D+++ H
Sbjct: 151 IGLRYFEDFEKRIPREEMLQMQDIVLNEIKKVDSKYIATVCGSFRRGAESSGDMDILLTH 210
Query: 383 PDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC-------- 430
P S L + V++L+++ F+ + L G + G+C
Sbjct: 211 PSFTSESAKQPKLLHQVVEQLQKVHFITDTL----------SKGDTKFMGVCQLSSEDEE 260
Query: 431 -TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 489
YP R RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 261 VAYPYR----RIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-- 314
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 315 ---GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 347
>gi|10432813|dbj|BAB13852.1| unnamed protein product [Homo sapiens]
Length = 515
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 177/340 (52%), Gaps = 36/340 (10%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
G Y G+C PG RH R+D V P +A L
Sbjct: 467 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACAL 503
>gi|409075809|gb|EKM76185.1| hypothetical protein AGABI1DRAFT_122771 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 780
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 199/395 (50%), Gaps = 31/395 (7%)
Query: 142 FQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKN 201
F GD+E A +P + + T T A P +N++
Sbjct: 403 FDESDSGDIEPTADEPSPRVSQNKQKRGWTCDTPQAP---------------KSPCVNQD 447
Query: 202 ITEIFGKLINIYRA-LGEDR--RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
I E +L +++A +G++ R++SY K+I I P +I+S + + + G+G
Sbjct: 448 ILEKLQELQELHKAKVGDEEHWRAYSYNKSIRAIHIYPKRIQSYSEARSIRGVGDKTALK 507
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 316
I+EI+ TG L ++ +FEK + V+ LF ++G+G +TA K Y G RTL+DL+++
Sbjct: 508 IKEILQTGDLRRI-NFEKTDDVKVTRLFQGIYGVGQSTAFKWYSAGCRTLEDLRSQKGGV 566
Query: 317 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L+ Q +GL+Y+DDI R+PR E + + L++ ++ + GS+RRGKA CGD
Sbjct: 567 RLSSVQMIGLQYYDDINDRMPRSEAKAIFELVKPIALSFDSKLFVEIMGSFRRGKADCGD 626
Query: 376 LDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
+D++I P D ++H G L + + L + + EDL E Y GLC P
Sbjct: 627 IDILITRPTDDGQTHSGVLKRLLAALHKGGIITEDLAIP----ENLADLECVYRGLCRLP 682
Query: 434 GR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
R RIDF P + L+ +TG+D+ NR +RL A GY L+ GLF
Sbjct: 683 SPGSRRRRIDFLTVPWESRGAALLYYTGDDIFNRAMRLKANKLGYSLNQRGLFNGVVRDV 742
Query: 493 GKQGVRAR--TSLKFDTEKEVFDFLGFPWLEPHER 525
+ V+ T + +TE+E+F L PW EPHER
Sbjct: 743 KDRRVKLNQGTLVASETEEEIFRILDVPWQEPHER 777
>gi|389738936|gb|EIM80131.1| hypothetical protein STEHIDRAFT_68704 [Stereum hirsutum FP-91666
SS1]
Length = 776
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 182/349 (52%), Gaps = 28/349 (8%)
Query: 199 NKNITEIFGKLINIYRA---LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIG--- 252
N++I + KL ++RA G+ R+F+Y K +P + P +IES + +PGIG
Sbjct: 431 NEDIVILLEKLAEMHRAKPMPGDFWRTFTYQKILPKLRAYPTRIESYAEAVSIPGIGDAT 490
Query: 253 --KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 310
K+ IQEI+ TG L +L +E V I+LF ++G+G TA K Y G TL+D
Sbjct: 491 AKKAGGSSIQEILETGDLRRL-LYENTRDVEVINLFYGIYGVGRQTAYKWYRYGCETLED 549
Query: 311 L---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
L KN L Q LGLKY+ DI TRIPR E ++ +++ + P++ I GSYR
Sbjct: 550 LFSGKNGVQLNEVQELGLKYYQDINTRIPREEAAEIFEDIKRIALRIDPKLFIDIMGSYR 609
Query: 368 RGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT 425
RGK + GD+D++I P D K+H L K +++L++ + DL S G++
Sbjct: 610 RGKNTVGDIDILITRPTDDGKTHSRVLYKLLRELRKASIITNDLALPDDS-----FGLEA 664
Query: 426 -YFGLCTYPG------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y GLC + R RID P LI +TG+D+ NR +R+ A+ GY
Sbjct: 665 IYRGLCVRTHTNVPHEKRTRRRIDILCVPWASRGAALIYYTGDDLFNRSIRMKADVMGYS 724
Query: 479 LDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
L+ GL+ K+ V+ + TE+E+F LG PW EPHER
Sbjct: 725 LNQRGLYAGVVRKPSKRTVKTSPGNIIASSTEEEIFKILGVPWQEPHER 773
>gi|119570142|gb|EAW49757.1| polymerase (DNA directed), lambda, isoform CRA_a [Homo sapiens]
Length = 514
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 177/338 (52%), Gaps = 36/338 (10%)
Query: 122 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 176
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 466
Query: 417 EGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAF 453
G Y G+C PG RH R+D V P +A+
Sbjct: 467 NGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFAW 501
>gi|357627529|gb|EHJ77195.1| hypothetical protein KGM_16934 [Danaus plexippus]
Length = 331
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 184/341 (53%), Gaps = 25/341 (7%)
Query: 196 PDLNKNITEIFGKLI--------NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG 247
P N N+ F + N+ R + + +Y KA V+ +IES Q K
Sbjct: 7 PSTNNNVNADFCDFLMELADYEKNVSRNI---HKYNAYRKAASVLAAHHKRIESGQQAKK 63
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 307
L G+G+ + I E + TGKL KLE+ DEK + ISL V GIGP A L +KG +T
Sbjct: 64 LNGVGEKISKKIDEFLQTGKLRKLENIHNDEKAQAISLLTRVSGIGPVKAADLIDKGIKT 123
Query: 308 LDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 366
L+DL KN+D L H Q +GLKYF++ + +IPR E++++E +++K ++ + I GSY
Sbjct: 124 LEDLNKNQDLLNHHQLIGLKYFENFEEKIPREEIQKIEAIIKKNILDLDCDYTITICGSY 183
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
RRG + GD+DV++ HP K K + + K LKE+K +LI S G +
Sbjct: 184 RRGASQSGDIDVLVTHPTMKLDKEKIGE--KLLKEIKEALGELIVDVIS-----MGATKF 236
Query: 427 FGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
G+C L R+D ++ P + Y ++ +TG+DV N+ +R A K + L++ L P
Sbjct: 237 MGVCRLSDGHLNRRLDIRLIPNEQYHCAVLYFTGSDVFNKNMRAHALEKRFTLNEYSLRP 296
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
G GV + + +E+++FD++ +P+ +P ERNL
Sbjct: 297 I-----GVTGVHGQ-PVPITSEEDIFDYIDYPYKKPEERNL 331
>gi|307178501|gb|EFN67190.1| DNA polymerase beta [Camponotus floridanus]
Length = 337
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 191/343 (55%), Gaps = 23/343 (6%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 252
N + N+++ + +L + R + ++ + +Y KA + LP +++S ++ K LPGIG
Sbjct: 9 NANNPNQDLCDFLLELADFERNVSKNIYKYNAYRKAAGTLSALPERVKSGEEAKKLPGIG 68
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+ I E + TGKL KLE KDE ISL V GIGPA A++L + G +TL+DLK
Sbjct: 69 IKIAKKIDEFLQTGKLQKLEDIRKDENNIAISLLARVSGIGPAKAKELVDAGIKTLEDLK 128
Query: 313 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
+++ LTH Q+LGLKYFDD + +IPR E+ Q+E +L+ A +E+ + ++ GSYRRGK
Sbjct: 129 KHQNMLTHHQKLGLKYFDDFEKKIPRAEIIQIEGILRDAMKEISHDYLVTICGSYRRGKE 188
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED--LIFSTHSEEGTDSGVDTYFGL 429
GD+DV+I HPD S K LK + E+ LI T S G + G+
Sbjct: 189 ESGDIDVLITHPDYTSKTKDAKKKNISLKTIVECLEEKKLITDTIS-----LGSTKFMGV 243
Query: 430 CTYPGRELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
C R+ +H R+D ++ D Y ++ +TG+D+ N+ +R A K Y L++ L
Sbjct: 244 CQL--RKSKHKPFRRLDIRLTFYDQYYCAILYFTGSDLFNKNMRAHALEKKYTLNEYALK 301
Query: 486 PATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
P T G G+ K E+++F+ LG P+ +P +RN+
Sbjct: 302 PLTIEGCPGEPE-------KITCEEDIFEILGLPYKDPKDRNV 337
>gi|449544000|gb|EMD34974.1| hypothetical protein CERSUDRAFT_157745 [Ceriporiopsis subvermispora
B]
Length = 697
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 186/337 (55%), Gaps = 15/337 (4%)
Query: 199 NKNITEIFGKLINIYR---ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
N+++ E +L+ ++R ++ + R +SY KAI + + P +I S +Q +G+ G+G
Sbjct: 363 NQDVVEKLEQLMELHRTKSSMEDHWRVYSYGKAIRALRQHPRRITSYEQARGIDGVGDKT 422
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 312
I EI++TG+L +L+ FEK + TI+LF ++G+G TA+K Y +G RTL DL K
Sbjct: 423 AQKIMEIISTGELRRLD-FEKTDDAETITLFQGIYGVGLNTARKWYNRGCRTLQDLNEGK 481
Query: 313 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
L+H Q++G+ Y+ DI +R+PR E ++ ++ + P + I GSYRRG+
Sbjct: 482 GGVQLSHVQQIGVNYYADINSRMPRAEATEIFERVKTIALRLDPRLFIEILGSYRRGEPD 541
Query: 373 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
CGD+DV+I P D K+H+G L + + +L L EDL ++ D + Y GLC
Sbjct: 542 CGDIDVLITRPTDDGKTHRGLLRRLLGELHAQGILTEDLCL---PDDFNDLEL-VYRGLC 597
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY- 489
R RIDF P + L+ +T + NR LR+ A G+ L+ GLF
Sbjct: 598 RRDAYSTRRRIDFLTIPYESRGAALLYYTSDPQFNRSLRMKANVMGFALNQRGLFAGVVR 657
Query: 490 -GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
S +Q + T + +TE+E+F LG PW EPHER
Sbjct: 658 NPSDKRQKLSDGTCVASETEREIFRILGVPWQEPHER 694
>gi|327351852|gb|EGE80709.1| DNA polymerase POL4 [Ajellomyces dermatitidis ATCC 18188]
Length = 720
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 205/430 (47%), Gaps = 23/430 (5%)
Query: 102 EGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS 161
+G +I D ++ Q + + D S+ ++V+ S D E L+EA
Sbjct: 306 KGHDILDELIKQARAEKDLPLDQSEEEDVDTASTIDEVD-----SNSDSEAEKLNEAKKK 360
Query: 162 PMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRR 221
+ T FS H D + P N EI K+ Y + + R
Sbjct: 361 KKKKKRSTGNPQWQQT---FSCMHKHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWR 415
Query: 222 SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 281
+ +Y KAI + K +I + +Q +PGIG+ + I+EIV T +L +LE +
Sbjct: 416 TLAYRKAISALRKQKERIVTREQAVTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDV 475
Query: 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 341
+S F ++G+G A A K ++G+++LDDLK + SLT +Q++G++++DD RIPR EVE
Sbjct: 476 LLSQFLNIYGVGFAQASKWIQQGYQSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVE 535
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY----VK 397
+++K V P V ++ GGSYRRG AS GD+D++I D + + +
Sbjct: 536 AHGAIVKKLLFTVDPAVQVIIGGSYRRGAASSGDIDLIITK-DGATQAEICALMTDIVIP 594
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE--LRHRIDFKVYPRDIYAFGL 455
L + FL+ L E + G C PG + + RIDF P D L
Sbjct: 595 ALFQQNFLQASLAVGRRGESS------KWHGACALPGSKNPVWRRIDFLYVPGDEIGAAL 648
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
I +TGND+ NR LRLLA KG L+ GLF + + + ++ EK +F+ L
Sbjct: 649 IYFTGNDIFNRSLRLLASKKGMCLNQRGLFTGIIRRENRVKLNSGRLIESRDEKRIFEIL 708
Query: 516 GFPWLEPHER 525
G PW P+ R
Sbjct: 709 GVPWRPPNHR 718
>gi|358372916|dbj|GAA89517.1| DNA polymerase Pol4 [Aspergillus kawachii IFO 4308]
Length = 724
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 180/351 (51%), Gaps = 25/351 (7%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N N I ++++ Y+ + R +Y KAI + + P KI + + +PGIG+
Sbjct: 378 NSENPNSNTIAILQQMLDFYKRTNDQWRVLAYRKAISALRRQPRKISTRLEALAIPGIGE 437
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ + I+EIV+T L +LE+ + + + LF ++G+G A +G++TL DL+
Sbjct: 438 RIANKIEEIVSTNHLRQLEYATNSREDKILKLFTGIYGVGITQASIWLAEGYKTLGDLRL 497
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ LTH+QR+G+ ++ D RIPR EVE+ +++KA + P++ ++ GSYRRG C
Sbjct: 498 KIKLTHNQRVGIDHYRDFAQRIPRSEVEEHGEIVRKAVQSADPDMQVIIAGSYRRGAPDC 557
Query: 374 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG------------ 418
GD+D++I PD + + + L+ F++ DL S+ S +G
Sbjct: 558 GDIDLLITKPDAEIDYIRTVMMRTVIPTLRRQDFIKADLA-SSSSRDGSKWHGACAIPPP 616
Query: 419 ----TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+D+ + YF P R R RID P LI +TGND+ NR +RLLA
Sbjct: 617 PPPKSDNKWENYFT----PTRPWR-RIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASK 671
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG RL+ GL+ ++ + L+ E+ +FD LG PW P R
Sbjct: 672 KGMRLNQRGLYTDVLRGPQREKINEGRLLEGHDERRIFDILGVPWRPPEHR 722
>gi|189188924|ref|XP_001930801.1| DNA polymerase lambda [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972407|gb|EDU39906.1| DNA polymerase lambda [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 670
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 190/398 (47%), Gaps = 13/398 (3%)
Query: 137 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD-----FSSHHITDPSL 191
ED + A D E + E P + L+N LS +SA D ++ DP
Sbjct: 275 EDADSLLASGIDDAEDSGTDEEPLVALKPTKLSNILSRSSALRDKKVINMNTFQCMDPGA 334
Query: 192 L-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 250
YN + N +I ++ Y + + R+ SY K I ++K KI +A+Q LP
Sbjct: 335 NGYNSQNPNARTIQILEEMCKHYDQMQDHWRTLSYRKCINTLKKQTVKITTAEQAIALPF 394
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 310
IG + D I+EIV T +L +L+ D + + LF ++G G + A K + G+RTL D
Sbjct: 395 IGTRLADKIEEIVLTVRLRRLDSTRDDPLDKILRLFLGIYGAGLSQANKWIQTGYRTLSD 454
Query: 311 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 370
L+ + LT SQ++GL+++ D +RIPR EVE ++ A +++ P+ GSYRRG
Sbjct: 455 LETKAKLTPSQKVGLEHYTDFNSRIPRAEVEVHGAVVIAALKKIDPKFKATIMGSYRRGA 514
Query: 371 ASCGDLDVVIMHPDR---KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYF 427
GD+D++I PD V L + FL+ L S D +
Sbjct: 515 KDSGDIDMIITCPDTPLAAMRTTVFEVLVPHLYKTGFLKASLATS----RSNDPAGSKWH 570
Query: 428 GLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
G P + R+D + P + LI +TGND+ NR +RLLA RL+ GL+
Sbjct: 571 GASCLPELTVWRRMDLLLVPEEEMGAALIYFTGNDIFNRSMRLLARKMNMRLNQRGLYKD 630
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + ++ EK++F+ LG PW EPHER
Sbjct: 631 VKREARGEKLNEGVLVEGRNEKKIFETLGVPWREPHER 668
>gi|380025572|ref|XP_003696544.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase beta-like [Apis
florea]
Length = 337
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 189/340 (55%), Gaps = 19/340 (5%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 252
N + N+++ + +L N R + ++ + +Y KA + L +I+S + K LPGIG
Sbjct: 9 NTGNPNQDLCDFLIELANYERNVSKNIYKYNAYRKAAGTLSGLTERIKSGQEAKKLPGIG 68
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+ + I E ++TGKL KLE KDE I+L V GIGPA A++L G +TLDDLK
Sbjct: 69 EKIAKKIDEFLSTGKLQKLEDINKDENNIAINLLTRVSGIGPAKAKELVTAGIKTLDDLK 128
Query: 313 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
+E+ L H Q++GLKYF+D + RIPR E+EQ+E++++ ++ E II+ GSYRR K
Sbjct: 129 KHEEKLNHHQKIGLKYFEDFEKRIPRKEIEQIEKIMKDIIADLSEEYIIIICGSYRREKE 188
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL--REDLIFSTHSEEGTDSGVDTYFGL 429
GD+DV++ +P S + L K LK + + ++ LI T S G + G+
Sbjct: 189 DSGDIDVLLTYPAYTSKEQKLKKENSILKNVINVLEKKKLIVDTIS-----LGPTKFMGV 243
Query: 430 CTYPGRELRH--RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
C PG+ H R+D + P D Y ++ +TG+D+ N+ +R A K Y L++ L
Sbjct: 244 CKVPGKNKNHXRRLDIRFIPYDQYYCAVLYFTGSDLFNKSMRAHALEKNYTLNEYTLKRL 303
Query: 488 TY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
T G+ GK + K E+++F L P+ +P +RN
Sbjct: 304 TSEGTPGK-------AEKITCEEDIFRILELPYKKPKDRN 336
>gi|332027963|gb|EGI68014.1| DNA polymerase beta [Acromyrmex echinatior]
Length = 337
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 188/341 (55%), Gaps = 19/341 (5%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 252
N + N ++ + +L + R + ++ + +Y KA + L +++S ++ K LPGIG
Sbjct: 9 NANNPNHDLCDFLMELADYERNVSKNVYKYNAYRKAAGTLSALTERVKSGEEAKKLPGIG 68
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+ I E + TGKL KLE +KD+ ISL V GIGPA A++L E G +TL+DLK
Sbjct: 69 VKIAKKIDEFLQTGKLQKLEDIKKDDTNVAISLLARVSGIGPAKAKELVESGIKTLEDLK 128
Query: 313 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
++D LTH Q+LGLKYFDD + +IPR E+ Q+E++L+ A +E+ ++ GSYRRGK
Sbjct: 129 KHQDKLTHHQKLGLKYFDDFEKKIPRAEIAQIEKVLKNAIKELNSAYLVTICGSYRRGKE 188
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKY---VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
GD+DV++ HPD ++SK KK +K + E L + G + G
Sbjct: 189 ESGDIDVLVTHPD------YISKAKDGKKKAISLKTIVECLEKKKLITDTISLGSTKFMG 242
Query: 429 LCTYPGRELR--HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
+C P + + R+D ++ D Y ++ +TG+D+ N+ +R A K Y L++ L
Sbjct: 243 ICQLPEDKSKPFRRLDIRLTFHDQYYCAILYFTGSDLFNKNMRAHALEKKYTLNEYALKR 302
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
T R + K +E++VF FLG + +P +RN+
Sbjct: 303 LTIEG------RPGEAEKITSEEDVFKFLGLSYKDPKDRNI 337
>gi|51860136|gb|AAU11318.1| DNA polymerase beta [Xiphophorus maculatus]
gi|51860138|gb|AAU11319.1| DNA polymerase beta [Xiphophorus maculatus]
Length = 337
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 184/342 (53%), Gaps = 29/342 (8%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N + + + +Y KA I K P KI++ ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTIAKYPNKIKNGEEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E + TGKL KLE D+ +I+ V GIGPA A+K E+G +TLDDLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVKTLDDLKKVEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GLKYF++ + RIPR E+E+ME L+ +++ PE I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLKYFEEFEKRIPRVEMEKMEVLILGELKKIDPEYIGTICGSYRRGAASSGD 190
Query: 376 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HP+ S L V L+ + F+ + L G + G+C
Sbjct: 191 IDILLTHPNYTSQTEKQPKLLHAVVDHLESVGFVTDTL----------SKGDTKFMGVCQ 240
Query: 432 YP-------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
L RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ L++ +
Sbjct: 241 LQDTDDDEEEEHLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTI 300
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G G G L D+E+++F+++ + + EP +R+
Sbjct: 301 RPL--GVTGMAG----EPLLVDSERDIFEYIQYRYREPKDRS 336
>gi|383859756|ref|XP_003705358.1| PREDICTED: DNA polymerase beta-like [Megachile rotundata]
Length = 337
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 190/336 (56%), Gaps = 19/336 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+++ + +L N R + ++ + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSKNIYKYNAYRKAAGTLGSLSERVKSGQEARKLPGIGEKIAK 73
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 316
I E ++TGKL KLE KDE I+L V GIGPA A++L + G +TL+DLK +++
Sbjct: 74 KIDEFLSTGKLQKLEDINKDESNVAINLLTRVSGIGPAKAKELVDNGIKTLNDLKKHQNK 133
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H Q++GLKYF+D + +IPR E+EQ+E++++ A ++ E I+ GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKKIPREEIEQIEKIMKDAVTKLSNEYILTICGSYRRGKNESGDI 193
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
DV++ HP S + K + LK + ++DLI T S G + G+C P
Sbjct: 194 DVLLTHPTYTSKEKESKKKISLLKNVVECLEKKDLITDTIS-----LGPTKFMGVCHVPH 248
Query: 435 RELR--HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT-YGS 491
+ + R+D ++ P D Y ++ +TG+D+ N+ +R A K Y L++ L T G+
Sbjct: 249 NDNKPQRRLDIRLAPYDQYYCAVLYFTGSDLFNKNMRAHALEKNYTLNEYTLKRLTPEGT 308
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
GK + E+++F LG P+ EP +RNL
Sbjct: 309 PGKPEI-------ITCEEDIFRILGLPYKEPKDRNL 337
>gi|389631907|ref|XP_003713606.1| hypothetical protein MGG_04577 [Magnaporthe oryzae 70-15]
gi|351645939|gb|EHA53799.1| hypothetical protein MGG_04577 [Magnaporthe oryzae 70-15]
gi|440467878|gb|ELQ37072.1| DNA polymerase lambda [Magnaporthe oryzae Y34]
gi|440478624|gb|ELQ59443.1| DNA polymerase lambda [Magnaporthe oryzae P131]
Length = 868
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 181/350 (51%), Gaps = 27/350 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI ++ + Y + + R+ +Y + I + + KI + ++ LP +G +
Sbjct: 521 NARTIEILQQMCDYYSQINDHWRTTAYRRVINTLRRQKHKITTEEEAVRLPSVGSRLAKK 580
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
I+EI T +L +LEH + R + L+ ++G+G A++ +G RTLDDLK E +L
Sbjct: 581 IEEIAATDRLQRLEHALNEPLDRVLQLYLGIYGVGLTQARRWISRGFRTLDDLKRPEANL 640
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
+QR+GL++++D+ TRIPR EVE + L+Q+ ++ +V +L GGSYRRG +S GD+D
Sbjct: 641 NKNQRMGLEHYEDLNTRIPRSEVEALGSLVQREAAKIDDQVELLVGGSYRRGASSSGDVD 700
Query: 378 VVIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP- 433
++ S FL + V++L E + + + + G + G C P
Sbjct: 701 FIVTRKGTVSTDELVPFLDRLVERLTETGVV----VATVAALHVNKLGASKWHGCCVLPP 756
Query: 434 ------------GRELRH------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
GRE ++ R+DF + P Y LI +TGND+ NR +RLLA K
Sbjct: 757 EEMPLQTGDGDGGREKQNYKPVWRRVDFLLVPETEYGAALIYFTGNDLFNRSIRLLASKK 816
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G RL+ GL+ S G++ V ++ E+ +F+ LG W EP ER
Sbjct: 817 GMRLNQRGLYLDVMRSRGREKVTDGQLIEGSDERRIFEILGVKWREPWER 866
>gi|426193747|gb|EKV43680.1| hypothetical protein AGABI2DRAFT_227537 [Agaricus bisporus var.
bisporus H97]
Length = 695
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 188/343 (54%), Gaps = 18/343 (5%)
Query: 196 PDLNKNITEIFGKLINIYRA-LGEDR--RSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 252
P +N++I E +L +++A +G++ R++SY K+I I P +I+S + + + G+G
Sbjct: 355 PCVNQDILEKLQELQELHKAKIGDEEHWRAYSYNKSIRAIHIYPKRIQSYSEARSIRGVG 414
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP--ATAQKLYEKGHRTLDD 310
I+EI+ TG L ++ +FEK + V+ LF ++G+G +TA K Y G RTL+D
Sbjct: 415 DKTALKIKEILQTGDLRRI-NFEKTDDVKVTRLFQGIYGVGKCQSTAFKWYSAGCRTLED 473
Query: 311 LKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
L+++ L+ Q +GL+Y+DDI R+PR E + + L++ ++ + GS+R
Sbjct: 474 LRSQKGGVRLSSVQMIGLQYYDDINDRMPRSEAKALFELVKPIALSFDSKLFVEIMGSFR 533
Query: 368 RGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT 425
RGKA CGD+D++I P D ++H G L + + L + + EDL +S +
Sbjct: 534 RGKADCGDIDILITRPTDDGQTHSGVLKRLLAALHKGGIITEDLAIPENSADLE----CV 589
Query: 426 YFGLCTYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
Y GLC P R RIDF P + L+ +TG+D+ NR +RL A GY L+ GL
Sbjct: 590 YRGLCRLPSPGSRRRRIDFLTVPWESRGAALLYYTGDDIFNRAMRLKANKLGYSLNQRGL 649
Query: 485 FPATYGSGGKQGVRAR--TSLKFDTEKEVFDFLGFPWLEPHER 525
F + V+ T + +TE+E+F L PW EPHER
Sbjct: 650 FNGVVRDVKDRRVKLNQGTLVASETEEEIFRILNVPWQEPHER 692
>gi|367044100|ref|XP_003652430.1| hypothetical protein THITE_2087560 [Thielavia terrestris NRRL 8126]
gi|346999692|gb|AEO66094.1| hypothetical protein THITE_2087560 [Thielavia terrestris NRRL 8126]
Length = 812
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/343 (32%), Positives = 168/343 (48%), Gaps = 16/343 (4%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + ++ R+ +Y KAI + + KI + ++ LP IG+ +
Sbjct: 468 NARTIEVLQSMCDYYTRINDNWRTLAYRKAIATLRRQSTKIMTEEEAYRLPNIGRRLAAK 527
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T KL +LE+ + + + F +++ +G + A K +G RTLDDL LT
Sbjct: 528 IEEIACTNKLRRLEYANDEPLDQVLETFLKIYDVGTSRANKWIAQGFRTLDDLLQRADLT 587
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++ ++D+ TRIPR EV + +++ ++ P V +L GGSYRRG S GD+D+
Sbjct: 588 PNQRIGIERYEDLNTRIPRDEVTALFEYVKREAAQLDPHVELLVGGSYRRGSDSSGDIDI 647
Query: 379 VIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP-- 433
++ S FL + L FL L G D + G C P
Sbjct: 648 IVTKKGTSSSADLVPFLEDLIAVLTRKGFLVATLAALHAHRAGKDGPGSKWHGCCVLPRE 707
Query: 434 --------GRELRH---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482
G RH RIDF + P Y LI +TGND+ NR +RLLA KG RL+
Sbjct: 708 GGASSESGGDAPRHIWRRIDFLLVPESEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQR 767
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GL+ + V L+ EK +F+ LG W EP ER
Sbjct: 768 GLYKEVMRGKNRVKVAEGELLEGRDEKRIFELLGVKWREPWER 810
>gi|154281005|ref|XP_001541315.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411494|gb|EDN06882.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 718
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 179/351 (50%), Gaps = 15/351 (4%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 375 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIT 432
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 433 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 492
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
++G+++L+DLK LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 493 IQQGYQSLEDLKARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 552
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS----KYVKKLKEMKFLREDLIFSTHSE 416
+ GGSYRRG AS GD+D++I D S + + L + +L+ L
Sbjct: 553 IIGGSYRRGAASSGDIDLIITK-DGASQADICALMTDVVIPALFQQNYLQASLAV----- 606
Query: 417 EGTDSGVDTYFGLCTYPGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
G G + G CT P + + RIDF P D LI +TGNDV NR LRLLA
Sbjct: 607 -GNRGGSSKWHGACTLPRSKSPVWRRIDFLYVPGDEIGAALIYFTGNDVFNRSLRLLASK 665
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG L+ GLF + + L+ EK +F+ LG PW P+ R
Sbjct: 666 KGMCLNQRGLFAGILRRENRMKLNRGHLLESRDEKRIFEILGVPWRPPNHR 716
>gi|336264419|ref|XP_003346986.1| hypothetical protein SMAC_05184 [Sordaria macrospora k-hell]
Length = 819
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 178/361 (49%), Gaps = 42/361 (11%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + R+ +Y KAI +++ KI +A++ LP +GK + +
Sbjct: 465 NARTIEVLQLMCDCYSRISDHWRTTAYRKAISTLKRQNTKITTAEEAYRLPNVGKRLAEK 524
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT L +LE+ + ++ F +++ +G A K KG RTLDDLK + +LT
Sbjct: 525 IEEIVTTDSLRRLEYAQDSPLDHVLATFLKIYDVGTGRANKWISKGFRTLDDLKQKANLT 584
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G+++++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 585 PNQRIGIEHYEDLNTRIPRSEVAALGDYIKKEAAQIDPIVELLIGGSYRRGAESSRDVDF 644
Query: 379 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP-- 433
++ D S F + +K L + + L + G D + G C P
Sbjct: 645 IVTKKDTTSSADLVAFFERLLKVLTDKGCVVATLSALNTTRPGKDGPGSKWLGCCVLPRA 704
Query: 434 ---------------------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
+ + R+DF + P Y LI +TGND+ NR +RLLA
Sbjct: 705 HEPTNDKVKTRRSAKSASPKTPQPVWRRVDFLLVPETEYGAALIYFTGNDIFNRSMRLLA 764
Query: 473 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT--------EKEVFDFLGFPWLEPHE 524
KG RL+ GL+ K+ +R R +K E+++F+ LG W EP E
Sbjct: 765 SKKGMRLNQRGLY--------KEVMRGRDRVKVTQGELVEGRDERKIFEILGVNWREPEE 816
Query: 525 R 525
R
Sbjct: 817 R 817
>gi|70995309|ref|XP_752414.1| DNA polymerase POL4 [Aspergillus fumigatus Af293]
gi|66850049|gb|EAL90376.1| DNA polymerase POL4, putative [Aspergillus fumigatus Af293]
gi|159131169|gb|EDP56282.1| DNA polymerase POL4, putative [Aspergillus fumigatus A1163]
Length = 702
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 177/339 (52%), Gaps = 12/339 (3%)
Query: 190 SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 249
S L NP N E+ ++++ Y + R+ +Y KAI + + P KI + Q +P
Sbjct: 371 SNLDNP---NCKTIEVLQQMLDYYTRTSDQWRTLAYRKAIAALRRQPRKIVTRAQALAIP 427
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 309
GIG + D I+EIV T +L +LE + + F V+G G + A + +G+RTLD
Sbjct: 428 GIGPRLADKIEEIVFTNRLRRLESTNNRPEDLILQEFLGVYGAGISQASRWIAQGYRTLD 487
Query: 310 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
DLK + +LT SQR+G++++ D RIPR EVE +++KA ++ P + ++ GGSYRRG
Sbjct: 488 DLKTKAALTRSQRIGVEHYHDFAQRIPRREVEAHGEIVRKAVQKADPGMQVIIGGSYRRG 547
Query: 370 KASCGDLDVVIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
+ GD+D++I D + + + +L + FL+ L ST +G+ +
Sbjct: 548 ASDSGDIDLLITKDDATIEQITTMMMDTVIPRLFQDGFLQVSLA-STSRGDGS-----KW 601
Query: 427 FGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
G PG ++ RID P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 602 HGASVLPGSKIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYA 661
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ + L+ E+ +F+ LG PW P R
Sbjct: 662 DVQCGEQRRKLSEGRLLEGRNERRIFEILGVPWRPPEHR 700
>gi|378729050|gb|EHY55509.1| DNA polymerase IV [Exophiala dermatitidis NIH/UT8656]
Length = 763
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 175/331 (52%), Gaps = 8/331 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E K+ Y A G+ R+ +Y +A+ + K P + + + + GIG+ + +
Sbjct: 437 NAQTIEKLLKMGEYYGATGDQWRTRAYRQAVAALRKQPQLVRTKEDALAVKGIGERIAEK 496
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
IQEIV+TG+L +L++ + D + +T+ LF ++ +G TA K +GHRTL+DL + L
Sbjct: 497 IQEIVSTGRLQRLDNAQLDSRDKTLRLFMGIYHVGYPTASKWIAEGHRTLEDLLAKVDLN 556
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++++DD + RIPR EV Q ++QK ++ + ++ GGSYRRG CGD+D+
Sbjct: 557 RNQRIGIEHYDDFQQRIPRAEVAQHAAIVQKELQKADRGLRMIVGGSYRRGSPDCGDIDL 616
Query: 379 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I D ++ + + +L FL+ L + H + G+ + G PG
Sbjct: 617 IIFKKDADLKQIQALMMETVIPRLTARGFLKVALATTHHKDSGS-----KWHGASALPGS 671
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
++ RIDF P LI +TGND NR LRLLA KG L+ GL+ G++
Sbjct: 672 KVWRRIDFLFVPWAELGAALIYFTGNDYFNRSLRLLASRKGMLLNQHGLYANILRGRGRE 731
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ L+ EK +F LG + P RN
Sbjct: 732 RMTDGKLLEGHDEKRIFKILGVTYRPPEHRN 762
>gi|241852129|ref|XP_002415815.1| DNA polymerase beta, putative [Ixodes scapularis]
gi|215510029|gb|EEC19482.1| DNA polymerase beta, putative [Ixodes scapularis]
Length = 338
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 185/333 (55%), Gaps = 17/333 (5%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N++I E +L + + + +S +Y KA +EKLP +++SA+ K LPGIG +
Sbjct: 13 NQDICEFLQELAEYEKNVTRNVHKSMAYRKAAATLEKLPERVKSAEAAKELPGIGVKISQ 72
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 316
I E + TGK++K+E D+ I V GIGPA A+ L+E+G +DDL K+ S
Sbjct: 73 KIGEFLATGKVAKVEKIRADDSTSAIQDLTRVSGIGPAAARSLFERGISNVDDLRKDPSS 132
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQME-RLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
LT Q++GL++ +D + RIPR EV Q+E R+L + ++C GSYRRG S GD
Sbjct: 133 LTQHQKIGLRHLEDFEKRIPREEVAQLEARILAECRALDEDYEAVVC-GSYRRGLPSSGD 191
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEM-KFLRE-DLIFSTHSEEGTDSGVDTYFGLCTYP 433
+D+++ H +S +G K K L + + LRE +I T S GT + G+C
Sbjct: 192 VDLLVCHKLYRSQEGTDQKPPKLLARLAERLREAGVITDTMSLGGT-----KFAGVCRLD 246
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
R+D ++ PRD + GL+ +TG+D+ N+ +R A +G+ L + L P GS G
Sbjct: 247 DSHPYRRLDMRLLPRDHFFCGLLYFTGSDIFNKSMRAHALQQGFTLSEYALRP--LGSTG 304
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G + +E++VFD+LG P+ EP +RN
Sbjct: 305 VAG----EPVPVSSERDVFDWLGLPYREPQQRN 333
>gi|380093161|emb|CCC09399.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 843
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 178/361 (49%), Gaps = 42/361 (11%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + R+ +Y KAI +++ KI +A++ LP +GK + +
Sbjct: 489 NARTIEVLQLMCDCYSRISDHWRTTAYRKAISTLKRQNTKITTAEEAYRLPNVGKRLAEK 548
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT L +LE+ + ++ F +++ +G A K KG RTLDDLK + +LT
Sbjct: 549 IEEIVTTDSLRRLEYAQDSPLDHVLATFLKIYDVGTGRANKWISKGFRTLDDLKQKANLT 608
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G+++++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 609 PNQRIGIEHYEDLNTRIPRSEVAALGDYIKKEAAQIDPIVELLIGGSYRRGAESSRDVDF 668
Query: 379 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP-- 433
++ D S F + +K L + + L + G D + G C P
Sbjct: 669 IVTKKDTTSSADLVAFFERLLKVLTDKGCVVATLSALNTTRPGKDGPGSKWLGCCVLPRA 728
Query: 434 ---------------------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
+ + R+DF + P Y LI +TGND+ NR +RLLA
Sbjct: 729 HEPTNDKVKTRRSAKSASPKTPQPVWRRVDFLLVPETEYGAALIYFTGNDIFNRSMRLLA 788
Query: 473 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT--------EKEVFDFLGFPWLEPHE 524
KG RL+ GL+ K+ +R R +K E+++F+ LG W EP E
Sbjct: 789 SKKGMRLNQRGLY--------KEVMRGRDRVKVTQGELVEGRDERKIFEILGVNWREPEE 840
Query: 525 R 525
R
Sbjct: 841 R 841
>gi|410923010|ref|XP_003974975.1| PREDICTED: DNA polymerase beta-like [Takifugu rubripes]
Length = 336
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 184/341 (53%), Gaps = 28/341 (8%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTISKYPSKIRNGEEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E + TGKL KLE D+ +I+L V GIGPA A+K +E+G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSTSINLLTRVTGIGPAAARKFFEEGVKTLEDLKKIEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GL YF++ + RIPR E+E+ME L+ +++ E I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLMYFEEFEKRIPRVEMEKMESLILGELKKIDTEYIGTICGSYRRGAASSGD 190
Query: 376 LDVVIMHPDRKS----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HPD S L V L+ + F+ + L G + G+C
Sbjct: 191 IDILLTHPDFTSETEKQPKLLHAVVDHLESIGFVTDTL----------SKGDTKFMGVCQ 240
Query: 432 YPGRE------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ L RID ++ P+D Y G++ +TG+D+ N+ +R A +G+ L++ +
Sbjct: 241 LQESDDDEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALDQGFTLNEYTIR 300
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G G G L ++E+++FD++ + + EP +R+
Sbjct: 301 PL--GVTGMAG----EPLMVNSERDIFDYINYRYREPKDRS 335
>gi|302662510|ref|XP_003022908.1| DNA polymerase POL4, putative [Trichophyton verrucosum HKI 0517]
gi|291186880|gb|EFE42290.1| DNA polymerase POL4, putative [Trichophyton verrucosum HKI 0517]
Length = 652
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 147/532 (27%), Positives = 243/532 (45%), Gaps = 50/532 (9%)
Query: 32 QNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAM------DLEALLQQS-------VIRYQ 78
Q RR++I R +++ GAT K VTH++A D+ LQ S ++
Sbjct: 131 QARRIRISR--VLKFGATRAAKFDASVTHIVAERRLNYEDVVEYLQVSSVPANIILVNEN 188
Query: 79 WLEDSL--RLGEKVSEDLYRIKL----DPEGENIADRVLSQIQGNGNTSSD----GESSH 128
+ + + R S ++IK +P G + +R I N + +D G+ S
Sbjct: 189 YPSECIMNRRILDASSPRFQIKRKLLSEPHGISSGERRHDCIPANSSRGTDSKKVGDRST 248
Query: 129 RKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN------------TLSTAS 176
+ + + F A+ D + + L+ + P+ S + T S
Sbjct: 249 EEAVPILPGHLPDFPAKDTADQDVDQLTYS--KPLDSSDEEDDEIVPGGFQSGLTTDCPS 306
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
F+ + D + P N E+ +++N Y + R +Y +AI + +
Sbjct: 307 WQKSFTCMNKMDGKDRADNP--NARTIEVLQQMLNYYERTADQWRCLAYRRAIAALRRER 364
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
K+ S Q + GIG+ + I+EIV T +L +LE + +S F ++G+G
Sbjct: 365 NKVVSKSQALKIKGIGERLAAKIEEIVWTNRLRRLEQANMEPSDALLSQFLNIYGVGYQQ 424
Query: 297 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
A K +G+++LDDLKN +LT +Q++G++ +DD + RIPR EVE ++++A +
Sbjct: 425 ASKWVAQGYKSLDDLKNRANLTTNQKIGIERYDDFQKRIPREEVEAHGAIVREAVVAMDS 484
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFST 413
++ GGSYRRG A GD+D++I ++ H ++ V +L E FL+ L S+
Sbjct: 485 SYTVITGGSYRRGAADSGDIDLIITKEGVSLQEIHDQIMTVVVPQLFERGFLKTGLAVSS 544
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
++ + G PG + RID P D LI +TGND+ NR LRLLA
Sbjct: 545 RADGS------KWHGASALPGNPVWRRIDLLFVPGDELGAALIYFTGNDIFNRSLRLLAS 598
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG L+ GLF G+ + A L+ EK +F+ L PW P R
Sbjct: 599 KKGMCLNQRGLFSDIMRGPGRVKLNAGHLLESRDEKRIFELLAVPWRPPEHR 650
>gi|281212126|gb|EFA86286.1| hypothetical protein PPL_00073 [Polysphondylium pallidum PN500]
Length = 617
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 177/336 (52%), Gaps = 15/336 (4%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N+++T + KL A G++ R ++Y +AI ++ L FK+ S QV + GIG +
Sbjct: 292 NYNEHLTSVLVKLQTKAEADGDNWRQYAYKRAIGILRNLTFKVTSDKQVGHIKGIGSKIS 351
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK---N 313
D I+EI+ TG L K+E + D ++ G GP T ++ KG ++ L+ N
Sbjct: 352 DKIKEILLTGTLKKVEMVQSDAHTIASEQLSKIHGTGPETVKRWLAKGINSIQKLQVIAN 411
Query: 314 EDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
D LT+ Q++GLKY++D + RIPR EV+ + ++Q E+ ++I+ GS+RR K+
Sbjct: 412 NDPSFLTNQQQIGLKYYNDFQHRIPREEVQDIANIVQLVANEIDQKIIMQVCGSFRRNKS 471
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+CGD+D++ H + GFL + V+KL + K L + L ++ D Y G+C
Sbjct: 472 TCGDIDILFTHSKGELLTGFLGRLVQKLVDCKLLTDHL-------TNLNTNSDKYMGVCR 524
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
RIDF+ R+ + F L+ +TG+D NR +RL A G+ L ++ L
Sbjct: 525 LDENSRHRRIDFQSIVREEWPFALLYFTGSDHFNRSMRLWARKNGFSLSESHLVRRW--- 581
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
G Q + E+++F LG + EPH+R +
Sbjct: 582 GTAQDEIKGEPIPAANERDIFQLLGLEYKEPHQREI 617
>gi|451998887|gb|EMD91350.1| hypothetical protein COCHEDRAFT_1175174 [Cochliobolus
heterostrophus C5]
Length = 756
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 23/370 (6%)
Query: 170 NTLSTASASPD-----FSSHHITDPS----LLYNPPDLNKNITEIFGKLINIYRALGEDR 220
+ LS ASA D +S DPS + +NP N +I ++ Y ++ +
Sbjct: 394 SVLSKASALRDKKYFNMNSFQCMDPSSSNHISWNP---NARTIQILEEMCKYYDSMQDQW 450
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R+ SY K + ++K KI +A+Q LP IG + I+EIV T +L +LE + +
Sbjct: 451 RTLSYRKCVATLKKQTVKITTAEQAAKLPSIGTHLAAKIEEIVLTDRLRRLESTRHNPQD 510
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
+ LF ++G+G A K + GHRTL DLK + +L+ +Q++GL+++ D +RIPR EV
Sbjct: 511 VALRLFLGIYGVGLVHANKWIQAGHRTLQDLKTKATLSENQKIGLEHYHDFNSRIPRAEV 570
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS---HKGFLSKYVK 397
E ++ A +E+ PE GSYRRG GD+D+++ P+ S +
Sbjct: 571 EAHGAIVAAALKEIDPEFSATIMGSYRRGAQDSGDIDIMLSRPNMSSTAMSTTIFEVLIP 630
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIA 457
L + FL+ L S +S+ + G + P + RIDF V P L+
Sbjct: 631 HLYKTGFLKASLTSSRYSDSSNSK----WHGASSLPSSTVWRRIDFLVVPEQEMGAALLY 686
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD--TEKEVFDFL 515
+TG+D+ NR +RLLA KG +L+ GL+ T G++G + + + +E+ +F+ L
Sbjct: 687 FTGDDIFNRSMRLLARKKGMKLNQRGLY--TDVLRGRKGEKLNDGVLIEGRSERRIFEIL 744
Query: 516 GFPWLEPHER 525
G PW EP ER
Sbjct: 745 GVPWREPGER 754
>gi|336390929|dbj|BAK40156.1| DNA polymerase beta [Tribolium castaneum]
Length = 330
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 167/309 (54%), Gaps = 25/309 (8%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA V+ P +I S + K L GIG+ + I E + TGKL KL++ D K I
Sbjct: 40 AYRKAASVLSSHPTRITSGQEAKKLNGIGEKIAKKIDEFLQTGKLQKLDNIHNDSKTTAI 99
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
+L +V GIGPA AQ L +G +L+DL K++D L H Q +GLKY+ D + +IPR+E++Q
Sbjct: 100 NLLTQVTGIGPAKAQTLVSEGITSLEDLEKHKDKLNHHQLIGLKYYHDFQQKIPRNEIKQ 159
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR-----KSHKGFLSKYVK 397
+E L++ E P++ + GSYRRGK GD+D +I HP+ K + L V
Sbjct: 160 IENLIRGHLE---PQIHLTICGSYRRGKQQSGDIDALITHPNYTSSQPKKKQNLLKNVVT 216
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIA 457
L+ + E + G + G C + R+D ++ P D Y ++
Sbjct: 217 ALQNCGLITEIISL----------GDTKFMGACKLDKNSITRRLDIRLTPFDQYFCAVLY 266
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
+TG+D+ N+++R A G+ L++ L P GS G G L+ +E+++FD +GF
Sbjct: 267 FTGSDMFNKQMRAHALDAGFTLNEYTLRPV--GSTGVPG----EPLEIHSERDIFDCIGF 320
Query: 518 PWLEPHERN 526
P+ EP +RN
Sbjct: 321 PYKEPQDRN 329
>gi|350412147|ref|XP_003489556.1| PREDICTED: DNA polymerase beta-like [Bombus impatiens]
Length = 336
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 185/339 (54%), Gaps = 28/339 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+++ + +L N R + + + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSNNIYKYNAYRKAASTLSTLSERVKSGQEARKLPGIGEKIAK 73
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 316
I E + TGKL KLE KDE I+L V GIGP A++L + G +TLDDLK +++
Sbjct: 74 KIDEFLNTGKLQKLEDINKDESNVAINLLTRVSGIGPTKAKELVDSGIKTLDDLKKHQEK 133
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H Q++GLKYF+D + RIPR E+EQ+E++++ + ++ E II GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKRIPRKEIEQIEKIIKDSIVKLNKEYIITICGSYRRGKEESGDI 193
Query: 377 DVVIMHP------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
DV++ HP K L V+ L++ K LI +T S G + G+C
Sbjct: 194 DVLLTHPTYTSKEKESKKKTSLKDVVECLEKRK-----LIVNTIS-----LGQTKFMGVC 243
Query: 431 TYPGRELR--HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
P + R+D ++ P D Y ++ +TGND+ N+ +R A K Y L++ L T
Sbjct: 244 QIPSNNKKPFRRLDIRLTPYDQYYCAVLYFTGNDLFNKSMRAHALEKNYTLNEYTLKRLT 303
Query: 489 -YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G+ G+ + K E+++F L FP+ EP +RN
Sbjct: 304 PEGTPGE-------AEKISCEEDIFRILKFPYKEPKDRN 335
>gi|261194855|ref|XP_002623832.1| DNA polymerase POL4 [Ajellomyces dermatitidis SLH14081]
gi|239588370|gb|EEQ71013.1| DNA polymerase POL4 [Ajellomyces dermatitidis SLH14081]
Length = 685
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 178/351 (50%), Gaps = 15/351 (4%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
FS H D + P N EI K+ Y + + R+ +Y KAI + K +I
Sbjct: 342 FSCMHKHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWRTLAYRKAISALRKQKERIV 399
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ +Q +PGIG+ + I+EIV T +L +LE + +S F ++G+G A A K
Sbjct: 400 TREQAVTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDVLLSQFLNIYGVGFAQASKW 459
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
++G+++LDDLK + SLT +Q++G++++DD RIPR EVE +++K V P V +
Sbjct: 460 IQQGYQSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVEAHGAIVKKLLFTVDPAVQV 519
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY----VKKLKEMKFLREDLIFSTHSE 416
+ GGSYRRG AS GD+D++I D + + + L + FL+ L E
Sbjct: 520 IIGGSYRRGAASSGDIDLIITK-DGATQAEICALMTDIVIPALFQQNFLQASLAVGRRGE 578
Query: 417 EGTDSGVDTYFGLCTYPGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+ G C PG + + RIDF P D LI +TGN + NR LRLLA
Sbjct: 579 SS------KWHGACALPGSKNPVWRRIDFLYVPGDEIGAALIYFTGNGIFNRSLRLLASK 632
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG L+ GLF + + + ++ EK +F+ LG PW P+ R
Sbjct: 633 KGMCLNQRGLFTGIIRRENRVKLNSGRLIESRDEKRIFEILGVPWRPPNHR 683
>gi|121701899|ref|XP_001269214.1| DNA polymerase POL4, putative [Aspergillus clavatus NRRL 1]
gi|119397357|gb|EAW07788.1| DNA polymerase POL4, putative [Aspergillus clavatus NRRL 1]
Length = 677
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 171/330 (51%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N + ++++ Y + R +Y KAI + + P KI + Q + +PGIG + D
Sbjct: 352 NTRTIGVLQQMLDYYTRTSDHWRVLAYRKAIAALRRQPKKIATRAQARAVPGIGPRLADK 411
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
++EIV T +L +LE+ + + F V+G G + A + +G+R+L+DLK + +LT
Sbjct: 412 VEEIVFTNRLRRLENANDTAEDLALQEFLGVYGAGISQASRWVAQGYRSLEDLKTKATLT 471
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
SQR+G+ ++ D RIPR EVE ++QKA + P + ++ GSYRRG + GD+D+
Sbjct: 472 KSQRVGVDHYYDFSQRIPRKEVEAHGSIVQKAVHKTNPGMQVIISGSYRRGASDSGDIDL 531
Query: 379 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I PD + + + +L + FL+ L ST +G+ + G PG
Sbjct: 532 LITKPDATIEQIRTMMIEVVIPQLFQEGFLQVSLA-STSRSDGS-----KWHGASMLPGS 585
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
++ RID P LI +TGND+ NR +RLLA KG RL+ GL+ ++
Sbjct: 586 KIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYADVLRGEQRK 645
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ L+ E+ +FD LG PW P R
Sbjct: 646 KLNEGRLLEGRNERRIFDILGVPWRPPEHR 675
>gi|336463231|gb|EGO51471.1| hypothetical protein NEUTE1DRAFT_88906 [Neurospora tetrasperma FGSC
2508]
gi|350297570|gb|EGZ78547.1| hypothetical protein NEUTE2DRAFT_154936 [Neurospora tetrasperma
FGSC 2509]
Length = 806
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 170/330 (51%), Gaps = 21/330 (6%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + R+ +Y KAI +++ +I +AD+ LP IGK + +
Sbjct: 493 NARTIEVLQSMCDYYSRVSDQWRTTAYRKAIATLKRQNTRITTADEAHHLPSIGKRLAEK 552
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT L +LE+ + ++ F +++ +G A K +G RTLDDLK + +LT
Sbjct: 553 IEEIVTTDSLRRLEYAQASPLDHVLATFLKIYDVGNGRANKWISQGFRTLDDLKQKANLT 612
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
H+QR+G+ Y++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 613 HNQRIGVDYYEDLNTRIPRSEVTAIGDYIKKEAAQIDPAVELLIGGSYRRGAESSRDVDF 672
Query: 379 VIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I + S F + +K L + + L + +G D PG
Sbjct: 673 IITKKNTTSSADLVPFFERLLKVLTDKGCVVATLSALHANRKGKDG-----------PG- 720
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+F + P Y LI +TGND+ NR +RLLA KG RL+ GL+ G+
Sbjct: 721 ------NFLLVPETEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYKEVMRGRGRV 774
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
V ++ E+ +F+ LG W EP ER
Sbjct: 775 KVTEGQLVEGRDERRIFEILGVKWREPEER 804
>gi|330928274|ref|XP_003302196.1| hypothetical protein PTT_13924 [Pyrenophora teres f. teres 0-1]
gi|311322563|gb|EFQ89686.1| hypothetical protein PTT_13924 [Pyrenophora teres f. teres 0-1]
Length = 771
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 185/398 (46%), Gaps = 13/398 (3%)
Query: 137 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD-----FSSHHITDPSL 191
ED + A D E + E P + LT L ASA D ++ DP
Sbjct: 376 EDADSPLASGIDDAEDSGTDEEPPVALRPTKLTKFLFKASALRDKKDINMNAFQCIDPGA 435
Query: 192 L-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 250
YN + N +I ++ Y + + RS SY K I ++K KI +A Q LP
Sbjct: 436 NGYNSQNPNARTIQILEEMCRYYDQMQDHWRSLSYRKCINTLKKQTVKITTAKQAIALPF 495
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 310
IG + D I+EIV T +L +L+ D + + LF ++G G A K + G+ TL D
Sbjct: 496 IGSRLADKIEEIVLTDRLRRLDSTRDDPLDKILRLFLGIYGAGLFQANKWIQAGYHTLSD 555
Query: 311 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 370
L+ + LT SQ++GL+++DD +RIPR EVE ++ A +++ GSYRRG
Sbjct: 556 LETKAKLTPSQKIGLEHYDDFNSRIPRAEVEAHGAVVIAALKKIDTNFKATIMGSYRRGA 615
Query: 371 ASCGDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYF 427
GD+D++I PD V L + FL+ L S D +
Sbjct: 616 KDSGDIDMIITCPDTSLAAMRTTVFEVLVPHLYKTGFLKASLATS----RSNDPAGSKWH 671
Query: 428 GLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
G P + R+D + P + LI +TG+D+ NR +RLLA G RL+ GL+
Sbjct: 672 GASCLPKSTVWRRMDLLLVPEEEMGAALIYFTGDDIFNRSMRLLARKMGMRLNQRGLYKD 731
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + ++ EK++F+ LG PW EPHER
Sbjct: 732 VKRGARGEKLNEGVLVEGRNEKKIFEILGVPWREPHER 769
>gi|20067705|emb|CAD29094.1| chimeric DNA-directed DNA polymerase bf4-3a [synthetic construct]
Length = 335
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 185/347 (53%), Gaps = 42/347 (12%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVI------ILCGGSYR 367
L H QR+GLKYF+D + RIPR + + L + E ++I I+ GS+R
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSFR 190
Query: 368 RGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV 423
RG S GD+DV++ HP+ S L + V++L++++F+ + L G
Sbjct: 191 RGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGE 240
Query: 424 DTYFGLCTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+ G+C P E H RID ++ P+D Y G++ +TG+D+ N+ +R A Y+
Sbjct: 241 TKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHA---NYK 297
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ GLF + LK TEKE+ LGF + P +R
Sbjct: 298 LNQYGLFKN----------QTLVPLKITTEKELIKELGFTYRIPKKR 334
>gi|145506893|ref|XP_001439407.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406591|emb|CAK72010.1| unnamed protein product [Paramecium tetraurelia]
Length = 616
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 181/333 (54%), Gaps = 10/333 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N I E KL+ IY + R +Y KAI ++ LP+ I+S++ +K +P IG ++
Sbjct: 290 NNEIIEELEKLLKIYTNEKDKGRCIAYRKAIGFLKALPYPIKSSEDLKDMPTIGDKIKKK 349
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 317
I EI+ TGKL+K++ E EK IS VWGIGP TA Y KG +TL+DL KN L
Sbjct: 350 IIEIMQTGKLTKVQKLEGQEKNVAISELTRVWGIGPTTAATFYFKGIKTLEDLKKNLHLL 409
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE---VLPEVIILCGGSYRRGKASCG 374
+Q++GL+ D++ RIPR E + ++++ ++ V GSYRR K +CG
Sbjct: 410 NRNQQVGLQLVKDLEQRIPREEATLIFEIVKREIDDLSGVQGLFKATACGSYRREKETCG 469
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
D+D++I D K+ + FL + +L E K L L +E +TY G+
Sbjct: 470 DMDILITRCDGKNTEDFLLNLITRL-EGKLLTHHLTMPKRTE----HDCETYMGIGRVSN 524
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
+ + RID K+YP++ Y ++ +TG+D NR +RL A+ GY L D GL+P G+ K
Sbjct: 525 QAVHRRIDLKLYPKEQYGCAVLYFTGSDHYNRSMRLWAQKNGYTLSDHGLYPTQRGAHNK 584
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ + + + E +V+ LG + P ER++
Sbjct: 585 KLWKGEV-IPCEEEMDVYKILGLKYKPPKERSV 616
>gi|322790963|gb|EFZ15611.1| hypothetical protein SINV_02512 [Solenopsis invicta]
Length = 341
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 190/340 (55%), Gaps = 13/340 (3%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 252
N + N+++ + +L + R + ++ + +Y KA + L +++S + K LPGIG
Sbjct: 9 NANNPNQDLCDFLMELADYERNVSKNVYKYNAYRKAAGTLGALTERVQSGKEAKKLPGIG 68
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+ + I E + TGKL KLE +KDE +ISL V GIGPA A++L E G +TL+DLK
Sbjct: 69 EKIAKKIDEFLQTGKLQKLE--DKDETNVSISLLARVSGIGPAKAKELVEAGIKTLEDLK 126
Query: 313 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
+++ LTH Q+LGLKYFDD + +IPR E+ ++E++L+KA +E+ +I GSYRRGK
Sbjct: 127 KHQNKLTHHQKLGLKYFDDFEKKIPRAEIVEIEKILKKAIKELNSAYLITICGSYRRGKE 186
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFSTHSEEGTDSGVDTYFGL 429
GD+DV++ HPD S K LK + ++ LI T S G + G+
Sbjct: 187 ESGDIDVLVTHPDYISTAKNEKKKTISLKAIVECLEKKKLITDTIS-----LGSTKFMGV 241
Query: 430 CTYPGRELR--HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
C + + R+D ++ D Y ++ +TG+D+ N+ +R A K Y L++ L
Sbjct: 242 CRLSEDKDKPFRRLDIRLTFHDQYYCAILYFTGSDLFNKNMRAHALEKKYTLNEYALKRL 301
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
T ++ + K +E++VF FL P+ EP +RN+
Sbjct: 302 TTEGRVREISLPGEAEKITSEEDVFKFLDLPYKEPKDRNV 341
>gi|116180792|ref|XP_001220245.1| hypothetical protein CHGG_01024 [Chaetomium globosum CBS 148.51]
gi|88185321|gb|EAQ92789.1| hypothetical protein CHGG_01024 [Chaetomium globosum CBS 148.51]
Length = 873
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 170/363 (46%), Gaps = 38/363 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI + + Y + R +Y KAI +++ P KI +A + LP IG +
Sbjct: 511 NAKTIEILQSMCDYYTRTNDTWRIMAYRKAIATLQRQPTKITTAAEAALLPNIGPRLAAK 570
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 316
IQEI TT +L +L++ + ++LF V+G G A A + +GHR+L DL +S
Sbjct: 571 IQEIATTNRLRRLDYTHDSPLDQALALFLGVYGAGSARAHRWIAQGHRSLADLLAPNSSA 630
Query: 317 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
LT QRLG++ + D+ RIPR EV ++ +Q+ + P V +L GGSYRRG S GD
Sbjct: 631 DLTPHQRLGVERYADLNARIPRAEVGKLFAYVQREAAAIDPGVEVLVGGSYRRGADSSGD 690
Query: 376 LDVVIMHPDRKSHKG-----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
+DV++ R + + FL + V+ L FL L + G D + G C
Sbjct: 691 VDVIVTR--RGTVRALELVPFLEELVQVLTRKGFLVATLAALHANRAGQDGPGGKWHGCC 748
Query: 431 TYPGRELR----------------------------HRIDFKVYPRDIYAFGLIAWTGND 462
P E R RIDF + P Y LI +TGND
Sbjct: 749 VLPPDEERADTNADADAGGGSGSGSGSGVPQKEPIWRRIDFLLVPEAEYGAALIYFTGND 808
Query: 463 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
+ NR LRLLA KG RL+ GL+ + + L+ EK +F+ LG W EP
Sbjct: 809 IFNRSLRLLASKKGMRLNQRGLYKEVLRGKNRAKITEGQLLEGRDEKRIFELLGVKWREP 868
Query: 523 HER 525
ER
Sbjct: 869 WER 871
>gi|391865336|gb|EIT74620.1| DNA polymerase IV [Aspergillus oryzae 3.042]
Length = 704
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 175/337 (51%), Gaps = 13/337 (3%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N+ ++ ++++ Y + R+ +Y KAI + + P KI + Q +PG+G
Sbjct: 374 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKAISALRRQPKKILTKSQALAIPGVGP 433
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 434 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 493
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 494 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 553
Query: 374 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
GD+D++I PD + + V KL + FL+ L ++ + + G
Sbjct: 554 GDIDLLITKPDATIEQIRALMIDVVVPKLFKRGFLQASLAITSRGDGS------KWHGAS 607
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
PG ++ RID P LI +TGND+ NR +RLLA KG RL+ GL+ T
Sbjct: 608 LAPGGQIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--TDV 665
Query: 491 SGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
G Q V+ T L+ E+ +F+ LG PW P R
Sbjct: 666 LRGPQRVKLNTGRLLEGRDERRIFEILGVPWRPPEHR 702
>gi|390359622|ref|XP_003729524.1| PREDICTED: DNA polymerase beta-like isoform 1 [Strongylocentrotus
purpuratus]
gi|390359624|ref|XP_787665.3| PREDICTED: DNA polymerase beta-like isoform 2 [Strongylocentrotus
purpuratus]
Length = 339
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 181/327 (55%), Gaps = 26/327 (7%)
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
N+ RA+ + +Y KA V+ K P KI+S D+ K L GIG + I E++ TGKL K
Sbjct: 29 NVNRAM---HKHNAYRKAASVLAKYPTKIKSGDEAKRLDGIGVQIAKKIDEVIATGKLEK 85
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDL-KNEDSLTHSQRLGLKYF 328
LE KD+K I+L V GIGP A+KL + G ++DDL KN D L H Q++GL++F
Sbjct: 86 LEKIRKDDKSEAINLLTRVSGIGPVAARKLVMDDGVMSIDDLRKNTDKLNHHQKIGLRHF 145
Query: 329 DDIKTRIPRHEVEQMERLLQ-KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 387
+D + RIPR EV ++E +L+ + E V +C GSYRRG AS GD+DV++ HP
Sbjct: 146 EDFERRIPREEVTRLEGILKSQVAAEDEDYVATVC-GSYRRGAASSGDMDVLLTHP---- 200
Query: 388 HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR-------HR 440
+ SK KK + + + + +I S + G + G+ P ++ + R
Sbjct: 201 --SYTSKDKKKPELLVSVVKRMIDSKLVTDTISQGDTKFMGIIRLPEKDAKEGEEIYFRR 258
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
+D ++ P D Y G + +TG+D+ N+ +R A +G+ +++ + P GS G G
Sbjct: 259 LDIRLIPHDQYHCGTLYFTGSDMFNKDMRAKALEEGFTINEYTIRP--MGSTGIAG---- 312
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHERNL 527
L +E++VFD++G + P +RNL
Sbjct: 313 EPLPVTSEEDVFDYIGMKYKSPSQRNL 339
>gi|171687419|ref|XP_001908650.1| hypothetical protein [Podospora anserina S mat+]
gi|170943671|emb|CAP69323.1| unnamed protein product [Podospora anserina S mat+]
Length = 830
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 174/340 (51%), Gaps = 12/340 (3%)
Query: 190 SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVI-EKLPFKIESADQVKGL 248
S NP N E+ + + Y + + R +Y +AI + ++ KI +A++ L
Sbjct: 497 SAANNP---NARTIEVLQSMCDYYTKINDRWRITAYRRAITTLRQQTTKKITTAEEAYTL 553
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 308
P IG + I+EI TT L +L++ + + + LF ++ +G + A K +GHRTL
Sbjct: 554 PNIGSRIARKIEEICTTNNLHRLQYANLEPTDKVLDLFLKIHDVGLSRANKWISQGHRTL 613
Query: 309 DDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
+DL + L+ +QR+ ++++ D+ +RIPR EV Q+ +Q+ V P+V +L GGSYRR
Sbjct: 614 EDLLTKADLSANQRVSIEHYSDLTSRIPRSEVTQLAAFVQREAFLVDPDVELLVGGSYRR 673
Query: 369 GKASCGDLDVVIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT 425
G + GD+D +I S F++ + L + FL L S EG+
Sbjct: 674 GSDTSGDIDFIITKRGTTSCSDLVPFMNSLISVLYKKNFLVATLSQSRREGEGSK----- 728
Query: 426 YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ G C P RID + P Y LI +TGND+ NR LRLLA KG RL+ GLF
Sbjct: 729 FLGCCRLPPGGKWRRIDLLLVPETEYGAALIYFTGNDIFNRSLRLLAGKKGMRLNQRGLF 788
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G+ GV ++ +E+ +F+ LG W EP ER
Sbjct: 789 RDVMRGRGRVGVTEGELVEGRSERRIFEVLGVRWREPSER 828
>gi|315053014|ref|XP_003175881.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
gi|311341196|gb|EFR00399.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
Length = 653
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ ++++ Y + R +Y +AI + + ++ + Q + GIG+ +
Sbjct: 328 NFRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRENERVMTKSQALKIRGIGERLAAK 387
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV T +L +LE + K +S F ++G+G A K +G+++LDDLKN LT
Sbjct: 388 IEEIVWTNRLRRLEQANMEPKDVLLSQFLNIYGVGYQQASKWIAQGYKSLDDLKNRAHLT 447
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 448 TNQRIGIERYDDFRKRIPREEVETHGAIVREAVLTMDKSYTVIIGGSYRRGAADSGDIDL 507
Query: 379 VIMH---PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
++ P ++ H ++ V +L E FL+ L S+ ++ + G PG
Sbjct: 508 ILTKEGAPLQEIHDQIMTTIVPQLFERGFLKTGLAVSSKADGS------KWHGASALPGN 561
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID P D LI +TGND+ NR LRLLA KG L+ GLF G+
Sbjct: 562 PVWRRIDLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQRGLFSDIMRGPGRV 621
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ A L+ EK +F+ L PW P R
Sbjct: 622 KLNAGHLLESRDEKRIFELLAVPWRPPEHR 651
>gi|449505804|ref|XP_002192856.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase lambda [Taeniopygia
guttata]
Length = 503
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 205/414 (49%), Gaps = 44/414 (10%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQ-------- 72
++++ G+ R +I+R+++VQ G V +LS +VTHV+ MD E +
Sbjct: 46 AYVLQAGIGQTRAEIFRRQIVQNGGVVHRQLSSEVTHVIVAEDMDCERAFRLLRLTKLRP 105
Query: 73 --SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGEN-----IADRVLSQIQGNGNTSSDGE 125
+++ WL +R + +S Y + + N + LS + N N +S
Sbjct: 106 GLQLVKAAWLSACIRDQKLLSTAGYGVFIPHRYANATLPCLPAFPLSXTEQNYNLTSAQN 165
Query: 126 ----------SSHRKKIKSSTEDVEHFQAE---------SKGDVETNALSEAPNSPMSSE 166
+ K STE ++ E ++GD+E AL SSE
Sbjct: 166 LGLQLLAAPPPAEEGAAKPSTESQKYSDDEDSEGEDAGVTQGDLE--ALISGHYPVKSSE 223
Query: 167 SLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYY 226
++++ T + P S + S + N+ ITE L Y G+ R+ Y
Sbjct: 224 EISDSSYTVAQPP---SKWVCAQSSNTKKENHNQCITEKLEVLAKAYSVQGDKWRALGYS 280
Query: 227 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 286
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + LF
Sbjct: 281 KAINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLELF 338
Query: 287 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
+WG G TAQ Y++G RTLDD++ + +LT Q +GLK++ D R+PR E ++E+
Sbjct: 339 SNIWGAGVKTAQMWYQQGFRTLDDIRTKATLTSQQAVGLKHYTDFLERMPREEAAEIEQT 398
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
+++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G SK + L+
Sbjct: 399 VRQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGVFSKLLNSLR 452
>gi|281200766|gb|EFA74984.1| hypothetical protein PPL_12018 [Polysphondylium pallidum PN500]
Length = 880
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 184/353 (52%), Gaps = 38/353 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ I +I ++ + G + +Y KAI I P K+ S + + L G+G +
Sbjct: 195 NQLICDILNEVSIFEKNKGATHKYNAYRKAIQSIRVHPKKLSSGSESQKLDGVGAKIAKK 254
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
+QEI+ TGKL+KL + DEK+ I+ V GIGPA A+KL E+G +++ L+ +L
Sbjct: 255 VQEILDTGKLAKLIKLQSDEKLVAINNISRVSGIGPAIAKKLVEEGVTSIEKLRKISTTL 314
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
H Q++GLKYF+DI+ R+PR E+E++E + + +++ + + GSYRRG AS GD+D
Sbjct: 315 NHHQQVGLKYFEDIEQRVPRDEIEKIETICIELLKKIDKDAVAETCGSYRRGAASSGDID 374
Query: 378 VVIMHP--------DRKSHKGF--LSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYF 427
+++ HP D K ++ F + K VK LKE + +D+ G Y
Sbjct: 375 LLLTHPKYNKEWKADAKKNQSFNLIEKLVKALKEKGVIVDDISL----------GPMKYM 424
Query: 428 GLCTYPG-------------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
G C P + + RIDFK+ P + Y FGL+ TG+D NR++R +A S
Sbjct: 425 GCCIVPNEMDKSKSSQKNPPKPIVRRIDFKLVPIESYYFGLLHNTGSDEFNRQMRAIALS 484
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
KGY L + + G+G + +E+ +FD +G + P +R+
Sbjct: 485 KGYTLSEYSI-NKILGAGANN---KSEDIIVHSERGIFDIIGMKYYAPTQRSF 533
>gi|327299906|ref|XP_003234646.1| DNA polymerase lambda [Trichophyton rubrum CBS 118892]
gi|326463540|gb|EGD88993.1| DNA polymerase lambda [Trichophyton rubrum CBS 118892]
Length = 651
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 148/563 (26%), Positives = 252/563 (44%), Gaps = 59/563 (10%)
Query: 14 DSNGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAM------D 65
D + G+ ++ + Q RR++I R +++ GAT K VTH++A D
Sbjct: 95 DHPSVLNGLVLYFIPNDDISQARRIRISR--VLEFGATRATKFDSSVTHIVAERRLNYED 152
Query: 66 LEALLQQS-------VIRYQWLEDSL--RLGEKVSEDLYRIK--------LDPEGENIAD 108
+ LQ S ++ + + + R S ++IK + P GE D
Sbjct: 153 VVEYLQVSSVPVNIILVNENYPSECIMNRRILDASSPRFQIKRKLLPEPQVIPSGEPRHD 212
Query: 109 RVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESL 168
+ + ++ G S + + + HF A+ D + S+ + ++ +
Sbjct: 213 CIPTNSSRGTDSKKAGTKSTEEAVPVPPGHLPHFPAKDTADQDGMQASDPDHLDLAIRHI 272
Query: 169 TNTLSTASASPD----------FSSHHITD-PSLLYNPPDLNK------------NITEI 205
N + S D F S TD P+ + +NK ++
Sbjct: 273 KNIAALPLDSSDEEDDEIVPGEFQSGLTTDCPAWQKSFTCMNKMDGKDRADNPNSRTIDV 332
Query: 206 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 265
++++ Y + R +Y +AI + + K+ S Q + GIG+ + I+EIV T
Sbjct: 333 LQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVSKSQALKIKGIGERLAAKIEEIVWT 392
Query: 266 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 325
+L +LE + + +S F ++G+G A K +G+++LDDLKN +LT +Q++G+
Sbjct: 393 NRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKNRANLTTNQKIGI 452
Query: 326 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD- 384
+ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D++I
Sbjct: 453 ERYDDFQKRIPREEVEAHCAIVREAVLAMDSSYTVIIGGSYRRGGADSGDIDLIITKEGV 512
Query: 385 --RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRID 442
++ H ++ V +L E +FL+ L S+ + + G PG + RID
Sbjct: 513 SLQEIHDQIMTVVVPQLFERRFLKTGLAVSSQIDGS------KWHGASALPGNPVWRRID 566
Query: 443 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
P D LI +TGND+ NR LRLLA KG L+ GLF G+ + A
Sbjct: 567 LLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQRGLFSDIMRGPGRVKLNAGHL 626
Query: 503 LKFDTEKEVFDFLGFPWLEPHER 525
L+ EK +F+ L PW P R
Sbjct: 627 LESRDEKRIFELLAVPWRPPEHR 649
>gi|145476207|ref|XP_001424126.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391189|emb|CAK56728.1| unnamed protein product [Paramecium tetraurelia]
Length = 609
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 183/333 (54%), Gaps = 10/333 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N I E KL+ IY + R +Y KAI I+ L F I S++ +K +P IG+ +++
Sbjct: 283 NNQIIEELEKLLKIYTNEKDKGRCIAYRKAIGYIKSLTFPIRSSEDLKEMPTIGEKIKNK 342
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 317
I EI+ TG+L K++ + EK I+ VWGIGP TA Y KG +TLDDL KN+ L
Sbjct: 343 IIEIIQTGQLVKVQKLQGQEKNVAITQLSRVWGIGPTTAATFYFKGIKTLDDLRKNQHLL 402
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--LPEVI-ILCGGSYRRGKASCG 374
+Q++ L+ ++++ RIPR E + ++++ +++ +P + GSYRR K +CG
Sbjct: 403 NRNQQVCLQLVEELEQRIPRDEATIIYDIVKREIDDLSGVPGLYKATACGSYRREKETCG 462
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
D+D++I D K+ GFL +++L E K L L E T+S Y G+
Sbjct: 463 DMDILITRCDGKNTDGFLLNLIQRL-EGKLLTHHLTIPRRGEHDTES----YMGIGRISN 517
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
+ RID K YP++ Y ++ +TG+D NR +RL A+ GY L D GL+P GS K
Sbjct: 518 NAIHRRIDLKFYPKEQYGCAVLYFTGSDQYNRSMRLWAQKIGYSLSDHGLYPTQRGSQNK 577
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ + + + E +V+ LG + P ER++
Sbjct: 578 ELWKGEV-IACEEEIDVYRILGLQYKPPKERSV 609
>gi|260619563|gb|ACX47468.1| DNA polymerase beta [Pongo pygmaeus]
Length = 296
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 26/296 (8%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 17 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 76
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF D + RIPR E+ Q
Sbjct: 77 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQ 136
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 398
M+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V++
Sbjct: 137 MQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQ 196
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDFKVYPRDIYAF 453
L ++ F+ + L G + G+C P +E H RID ++ P+D Y
Sbjct: 197 LPKVHFITDTL----------SKGETKFMGVCQLPSKNDEKECPHRRIDIRLIPKDQYYC 246
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 509
G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+EK
Sbjct: 247 GVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEK 296
>gi|164424229|ref|XP_963912.2| hypothetical protein NCU07461 [Neurospora crassa OR74A]
gi|157070429|gb|EAA34676.2| predicted protein [Neurospora crassa OR74A]
Length = 805
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 171/329 (51%), Gaps = 19/329 (5%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ + + Y + + R+ +Y KAI +++ +I +AD+ LP IGK + +
Sbjct: 492 NARTIEVLQSMCDYYSRVSDQWRTTAYRKAIATLKRQNTRITTADEAYHLPSIGKRLAEK 551
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIVTT L +LE+ + ++ F +++ +G A K +G RTLDDLK + +LT
Sbjct: 552 IEEIVTTDSLRRLEYAQASPLDHVLATFLKIYDVGNGRANKWISQGFRTLDDLKQKANLT 611
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
H+QR+G+ +++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 612 HNQRIGVDHYEDLNTRIPRREVTAIGDYIKKEAAQIDPAVELLIGGSYRRGAESSRDVDF 671
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE 436
+I + S + + + LK + K + + H++ G PG
Sbjct: 672 IITKKNTTSSADLVPFFERLLKVLTDKGCVVATLSALHADRKGKDG----------PG-- 719
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 496
+F + P Y LI +TGND+ NR +RLLA KG RL+ GL+ G+
Sbjct: 720 -----NFLLVPETEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYKEVMRGRGRVK 774
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHER 525
V ++ E+ +F+ LG W EP ER
Sbjct: 775 VTEGQLVEGRDERRIFEILGVKWREPEER 803
>gi|83774049|dbj|BAE64174.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 704
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 174/337 (51%), Gaps = 13/337 (3%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N+ ++ ++++ Y + R+ +Y K I + + P KI + Q +PG+G
Sbjct: 374 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKILTKSQALAIPGVGP 433
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 434 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 493
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 494 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 553
Query: 374 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
GD+D++I PD + + V KL + FL+ L ++ + + G
Sbjct: 554 GDIDLLITKPDATIEQIRALMIDAVVPKLFKRGFLQASLAITSRGDGS------KWHGAS 607
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
PG ++ RID P LI +TGND+ NR +RLLA KG RL+ GL+ T
Sbjct: 608 LAPGGQIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--TDV 665
Query: 491 SGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
G Q V+ T L+ E+ +F+ LG PW P R
Sbjct: 666 LRGPQRVKLNTGRLLEGRDERRIFEILGVPWRPPEHR 702
>gi|317155700|ref|XP_001825307.2| DNA polymerase POL4 [Aspergillus oryzae RIB40]
Length = 693
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 174/337 (51%), Gaps = 13/337 (3%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N+ ++ ++++ Y + R+ +Y K I + + P KI + Q +PG+G
Sbjct: 363 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKILTKSQALAIPGVGP 422
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 423 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 482
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 483 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 542
Query: 374 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
GD+D++I PD + + V KL + FL+ L ++ + + G
Sbjct: 543 GDIDLLITKPDATIEQIRALMIDAVVPKLFKRGFLQASLAITSRGDGS------KWHGAS 596
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
PG ++ RID P LI +TGND+ NR +RLLA KG RL+ GL+ T
Sbjct: 597 LAPGGQIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--TDV 654
Query: 491 SGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
G Q V+ T L+ E+ +F+ LG PW P R
Sbjct: 655 LRGPQRVKLNTGRLLEGRDERRIFEILGVPWRPPEHR 691
>gi|238498490|ref|XP_002380480.1| DNA polymerase POL4, putative [Aspergillus flavus NRRL3357]
gi|220693754|gb|EED50099.1| DNA polymerase POL4, putative [Aspergillus flavus NRRL3357]
Length = 618
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 178/350 (50%), Gaps = 15/350 (4%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
F+ DP N + N+ ++ ++++ Y + R+ +Y K I + + P KI
Sbjct: 277 FACVQKHDPK--SNSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKIL 334
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ Q +PG+G + D I+EIV T +L +LE+ + + F V+G G + A +
Sbjct: 335 TKSQALAIPGVGPRLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRW 394
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
+G+R+L+DL+ + SLT Q +G+ ++ D RIPR EVE ++++ ++ P + +
Sbjct: 395 LAQGYRSLEDLRTKASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQV 454
Query: 361 LCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ GSYRRG A CGD+D++I PD + + V KL + FL+ L ++ +
Sbjct: 455 IIAGSYRRGAADCGDIDLLITKPDATIEQIRALMIDVVVPKLFKRGFLQASLAITSRGDG 514
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
+ G PG ++ RID P LI +TGND+ NR +RLLA KG
Sbjct: 515 S------KWHGASLAPGGQIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGM 568
Query: 478 RLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
RL+ GL+ T G Q V+ T L+ E+ +F+ LG PW P R
Sbjct: 569 RLNQRGLY--TDVLRGPQRVKLNTGRLLEGRDERRIFEILGVPWRPPEHR 616
>gi|451848460|gb|EMD61766.1| hypothetical protein COCSADRAFT_192625 [Cochliobolus sativus
ND90Pr]
Length = 780
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 188/378 (49%), Gaps = 21/378 (5%)
Query: 162 PMSSESLT--NTLSTASASPD-----FSSHHITDPS----LLYNPPDLNKNITEIFGKLI 210
PM ++ L + LS ASA D +S DPS + +NP N +I ++
Sbjct: 408 PMGTDYLKRLSVLSKASALRDKKSFGMNSFQCMDPSASSNVSWNP---NARTIQILEEMC 464
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
Y + + R+ SY K + ++K KI +A+Q LP IG + I+EIV T +L +
Sbjct: 465 KYYDRMQDQWRTLSYRKCVATLKKQTVKITTAEQAAKLPSIGTHLAAKIEEIVLTDRLRR 524
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDD 330
LE + + + LF ++G+G A K + GHRTL+DLK + +L+ +Q++GL+ + D
Sbjct: 525 LESTCHNPQDVALRLFLGIYGVGLVCANKWIQAGHRTLEDLKTKATLSENQKIGLENYHD 584
Query: 331 IKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS--- 387
+RIPR EVE ++ A +E+ PE GSYRRG GD+D+++ P+
Sbjct: 585 FNSRIPRAEVEAHGVIVAAALKEIDPEFSATIMGSYRRGAQDSGDIDIILSRPNMSPTAM 644
Query: 388 HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYP 447
+ L + FL+ S S +DS + G P + RIDF + P
Sbjct: 645 STTIFEVLIPHLYKTGFLKA----SLRSSRYSDSSSSKWHGASCLPSSTIWRRIDFLIVP 700
Query: 448 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 507
L+ +TG+DV NR +RLLA KG +L+ GL+ + + ++ +
Sbjct: 701 EQEMGAALLYFTGDDVFNRSMRLLARKKGMKLNQRGLYMDVLIGRKGEKLNHGVLIEGKS 760
Query: 508 EKEVFDFLGFPWLEPHER 525
EK +F+ LG PW EP ER
Sbjct: 761 EKRIFEILGVPWREPGER 778
>gi|346471971|gb|AEO35830.1| hypothetical protein [Amblyomma maculatum]
Length = 335
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 34/335 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
D KNIT NIY+ S +Y KA +EKL ++ SA++ K LPGIG +
Sbjct: 25 DYEKNITR------NIYK-------SNAYRKAAVTLEKLDKRVTSAEEAKALPGIGAKIS 71
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 315
I E + TGK+SKLE DE + V GIGPA A+ LY++G R++D+L+ N+D
Sbjct: 72 QKIGEFLRTGKVSKLEKVRSDESASAVQELTRVSGIGPAHAKSLYDRGIRSIDELRQNQD 131
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
+LT Q++GL+Y +D + RIPR EV +E + + + + GSYRRG + GD
Sbjct: 132 ALTQHQKIGLRYLEDFEKRIPREEVSLLEARIVGELNKFDEDYQAVACGSYRRGLPTSGD 191
Query: 376 LDVVIMHPDRKSH----KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+DV++ H + +S L++ V++L++ + + + G + G+C
Sbjct: 192 IDVLVCHKNYRSTDKRPPKLLARLVEQLRQAGLVTDIMSL----------GETKFAGVCQ 241
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
RID +V P+D + GL+ +TG+D+ N+ +R A + L + L P G
Sbjct: 242 LDASRPHRRIDIRVLPQDQFFCGLLYFTGSDLFNQSMRAHAIQQNMTLSEYALRP--IGC 299
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G G L +E++VFD+LG P+ EP +RN
Sbjct: 300 TGVPG----EPLPISSERDVFDWLGLPYWEPDKRN 330
>gi|255950146|ref|XP_002565840.1| Pc22g19370 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592857|emb|CAP99225.1| Pc22g19370 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 711
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 181 FSSHHITDP-SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI 239
F+ DP + L NP N E+ +++ Y + R +Y KAI + K P KI
Sbjct: 371 FACMQKFDPDTKLDNP---NNRTIEVLQQMLEYYTQTADQWRVMAYRKAINALRKQPNKI 427
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
+ Q + +PGIG+ + D I+EIV T +L +LE+ + I F V+G G A K
Sbjct: 428 ATRAQARAIPGIGERLADKIEEIVLTNRLRRLENANHTPEDLIIKEFLGVYGAGLPQASK 487
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
+G+R+L DL LT QR+G++ D RIPR EVE +++KA + V ++
Sbjct: 488 WVAQGYRSLKDLLERAPLTKQQRIGVERHSDFAQRIPRKEVEAHGAIVRKAVQAVDRDMQ 547
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
++ GGSYRRG +CGD+D +I P + L V +L FL+ L S+H +
Sbjct: 548 VIIGGSYRRGALTCGDVDCLITKPGATLEQIRTMMLGLVVPRLFNSGFLQASLAISSH-Q 606
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
+G+ + G + PG L RID P LI +TGND+ NR +RLLA KG
Sbjct: 607 DGS-----KWHGASSLPGTTLWRRIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLARKKG 661
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ GL+ A + + L+ E+ +F LG PW P R
Sbjct: 662 MCLNQKGLY-ADVLRNKQVKLNGGRLLEGRDERRIFALLGVPWRPPEHR 709
>gi|91085421|ref|XP_967990.1| PREDICTED: similar to DNA polymerase beta [Tribolium castaneum]
gi|270009161|gb|EFA05609.1| hypothetical protein TcasGA2_TC015815 [Tribolium castaneum]
Length = 1080
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 167/309 (54%), Gaps = 25/309 (8%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA V+ P +I S + K L GIG+ + I E + TGKL KL++ D K I
Sbjct: 790 AYRKAASVLSSHPTRITSGQEAKKLNGIGEKIAKKIDEFLQTGKLQKLDNIHNDSKTTAI 849
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
+L +V GIGPA AQ L +G +L+DL K++D L H Q +GLKY+ D + +IPR+E++Q
Sbjct: 850 NLLTQVTGIGPAKAQTLVSEGITSLEDLEKHKDKLNHHQLIGLKYYHDFQQKIPRNEIKQ 909
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR-----KSHKGFLSKYVK 397
+E L++ E P++ + GSYRRGK GD+D +I HP+ K + L V
Sbjct: 910 IENLIRGHLE---PQIHLTICGSYRRGKQQSGDIDALITHPNYTSSQPKKKQNLLKNVVT 966
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIA 457
L+ + E + G + G C + R+D ++ P D Y ++
Sbjct: 967 ALQNCGLITEIISL----------GDTKFMGACKLDKNSITRRLDIRLTPFDQYFCAVLY 1016
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
+TG+D+ N+++R A G+ L++ L P GS G G L+ +E+++FD +GF
Sbjct: 1017 FTGSDMFNKQMRAHALDAGFTLNEYTLRPV--GSTGVPG----EPLEIHSERDIFDCIGF 1070
Query: 518 PWLEPHERN 526
P+ EP +RN
Sbjct: 1071 PYKEPQDRN 1079
>gi|374258480|gb|AEZ01786.1| DNA polymerase beta, partial [Larus glaucescens]
Length = 315
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 166/299 (55%), Gaps = 21/299 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+ IT+ +L N R + + +Y KA VI + P KI S + K L G+G + +
Sbjct: 12 NEGITDFLTELANYERNVNRAVHKYNAYRKAASVISRYPSKIRSGAEAKKLDGVGAKIAE 71
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 316
I E ++TGKL LE +D+ +I+L V G+GPA A+K E+G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRXLEKIRQDDTSASINLLTRVTGVGPAAARKFVEEGIKTLEDLRKNEHK 131
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
LTH QR+GLKYF+D + RIPR E+ QM+ ++ + +++ P I GS+RRG S GD+
Sbjct: 132 LTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLEEVKKLDPNYIATVCGSFRRGAESSGDM 191
Query: 377 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 192 DVLLTHPSFTSESSKQSKLLRQVVEQLEKVHFVTDVL----------SKGDTKFMGVCQL 241
Query: 433 PGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
P +E RID ++ P+D Y G++ +TG+D+ N+ +R A G +++ + P
Sbjct: 242 PNKEDGTAYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALGMGLTINEYTIRP 300
>gi|340371419|ref|XP_003384243.1| PREDICTED: DNA polymerase beta-like [Amphimedon queenslandica]
Length = 338
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 181/342 (52%), Gaps = 29/342 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N +I EI +L R + + + YK A V+ K P +I+S + + L G+G +
Sbjct: 13 NSDIAEILMELATYERNVARNIHKHNVYKKAANVLAKHPERIKSGAEARKLDGVGDKIAK 72
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DS 316
I EI++TG+L KLE D+ + I+ +V GIGPA A+KL ++G TL+DLKN D
Sbjct: 73 KIDEILSTGQLQKLEKIRADDSSQAINFLTQVTGIGPAAAKKLVDEGITTLEDLKNNMDK 132
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H Q++G+K+F + RIPR E+ Q++ + + EV I GS+RRG S GD+
Sbjct: 133 LNHHQQIGVKHFHEFNERIPRPEMLQLQEIAFRLIAEVDKAFIPTVCGSFRRGALSSGDI 192
Query: 377 DVVIMHP----DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+++ HP D KS F+ + V K++ F+ + L G + G+C
Sbjct: 193 DILLCHPGHTSDSKSKPKFIKEIVNKMETGGFVTDTLSI----------GETKFMGVCRL 242
Query: 433 PGRE-------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
P + L RID ++ P D Y FG + +TG+D+ N+ +R A KG+ L++ +
Sbjct: 243 PISDNKDEKPPLHRRIDIRLIPHDQYYFGTLYFTGSDMFNKNMRTHALEKGFTLNEYSIR 302
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
P G+ G G + E+++F + +P+ +P ER++
Sbjct: 303 PV--GATGIPG----EPVPVTCEEDIFTMIDYPYKKPEERSV 338
>gi|225559652|gb|EEH07934.1| DNA polymerase lambda [Ajellomyces capsulatus G186AR]
Length = 628
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 177/351 (50%), Gaps = 15/351 (4%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 285 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIV 342
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 343 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 402
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
++G+++L+DLK LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 403 IQQGYQSLEDLKARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 462
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS----KYVKKLKEMKFLREDLIFSTHSE 416
+ GGSYRRG AS GD+D++I D S + + L + +L+ L E
Sbjct: 463 IIGGSYRRGAASSGDIDLIITK-DGASQADICALMTDVVIPALFQQNYLQASLAVGNRGE 521
Query: 417 EGTDSGVDTYFGLCTYPGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+ G C P + + RIDF P D LI +TGN+V NR LRLLA
Sbjct: 522 SS------KWHGTCALPRSKSPVWRRIDFLYVPGDEIGAALIYFTGNEVFNRSLRLLASK 575
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG L+ GLF + + L+ EK +F+ LG PW P+ R
Sbjct: 576 KGMCLNQRGLFAGILRRENRVKLNRGHLLESRDEKRIFEILGVPWRPPNHR 626
>gi|302496957|ref|XP_003010479.1| DNA polymerase POL4, putative [Arthroderma benhamiae CBS 112371]
gi|291174022|gb|EFE29839.1| DNA polymerase POL4, putative [Arthroderma benhamiae CBS 112371]
Length = 671
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 169/330 (51%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ ++++ Y + R +Y +AI + + K+ S Q + GIG+ +
Sbjct: 346 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVSKSQALEIKGIGERLAAK 405
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV T +L +LE + +S F ++G+G A K +G+++LDDLKN +LT
Sbjct: 406 IEEIVWTNRLRRLEQANMEPSDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKNRANLT 465
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q++G++ +DD + RIPR EV+ ++++A + ++ GGSYRRG A GD+D+
Sbjct: 466 TNQKIGIERYDDFQKRIPREEVKAHGAIVREAVVAMDSSYTVIIGGSYRRGAADSGDIDL 525
Query: 379 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I ++ H ++ V +L E FL+ L S+ ++ + G PG
Sbjct: 526 IITKEGASLQEIHDQIMTIVVPQLFERGFLKTGLAVSSRADGS------KWHGASALPGN 579
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID P D LI +TGND+ NR LRLLA KG L+ GLF G+
Sbjct: 580 PVWRRIDLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQRGLFADIMRGPGRV 639
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ A L+ EK +F+ L PW P R
Sbjct: 640 KLNAGHLLESRDEKRIFELLAVPWRPPEHR 669
>gi|240279395|gb|EER42900.1| polymerase [Ajellomyces capsulatus H143]
gi|325089661|gb|EGC42971.1| polymerase [Ajellomyces capsulatus H88]
Length = 717
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 176/351 (50%), Gaps = 15/351 (4%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 374 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIV 431
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 432 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 491
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
++G+++L+DL LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 492 IQQGYQSLEDLNARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 551
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS----KYVKKLKEMKFLREDLIFSTHSE 416
+ GGSYRRG AS GD+D++I D S + + L + +L+ L E
Sbjct: 552 IIGGSYRRGAASSGDIDLIITK-DGASQSDICALMTDVVIPALFQQNYLQASLAVGNRGE 610
Query: 417 EGTDSGVDTYFGLCTYPGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+ G C P + + RIDF P D LI +TGNDV NR LRLLA
Sbjct: 611 SS------KWHGTCALPRSKSPVWRRIDFLYVPGDEIGAALIYFTGNDVFNRSLRLLASK 664
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG L+ GLF + + L+ EK +F+ LG PW P+ R
Sbjct: 665 KGMCLNQRGLFAGILRRENRVKLNRGHLLESRDEKRIFEILGVPWRPPNHR 715
>gi|449305237|gb|EMD01244.1| hypothetical protein BAUCODRAFT_29694 [Baudoinia compniacensis UAMH
10762]
Length = 716
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 176/330 (53%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N I ++ + Y +G++ R +Y KAI + K P KI + Q LP IG+ +
Sbjct: 391 NAATINILQQMADYYGQMGDEWRIRAYRKAITTLRKHPTKIWTRKQALALPQIGERLATK 450
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T +L +L++ + + F ++G G A A + +G++TLD++ + L+
Sbjct: 451 IEEIAFTNRLRRLDNARDEPTDHVLQAFMGIYGAGFAKASEWVSQGYKTLDEVLAKARLS 510
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++++ D RIPR EVEQ +++KA +++ P ++ GGSYRRG A+ GD+D
Sbjct: 511 SNQRIGIEHYADFNARIPRAEVEQHGGVVRKALQKLDPLFEVIIGGSYRRGAATSGDIDC 570
Query: 379 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I HP+ S L + V +L F+ L +TH ++G+ + G
Sbjct: 571 IITHPNADSAYLRMIVLEQVVPELTLSGFVVAALA-ATHKDDGSK-----WHGASKLANS 624
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID + P D LI +TG+D+ NR +RLLA +KG RL+ GL+ G+
Sbjct: 625 AVWRRIDLLLVPSDEIGAALIYFTGDDIFNRSIRLLASTKGMRLNQRGLYKDVMRGNGRM 684
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ T L+ E+++F LG P+ P +R
Sbjct: 685 KISKGTLLEGKDERKIFQILGVPYRPPIDR 714
>gi|115491397|ref|XP_001210326.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114197186|gb|EAU38886.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 622
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 169/335 (50%), Gaps = 9/335 (2%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N E+ ++++ Y + R +Y K I + K +I + Q +PGIG
Sbjct: 292 NSDNPNGRTIEVLQQMLDYYTRTDDHWRLLAYRKTISALRKQSNRITTRTQALAIPGIGT 351
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ D I+EIV T +L +LE+ + R + F V+G G + A + +G+R+L+DLK
Sbjct: 352 RLADKIEEIVYTDRLRRLENTSTTPEDRILQKFMGVYGAGLSQASRWLAQGYRSLEDLKA 411
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ LT +QR+G+ ++DD RIPR EVE ++++A +V P + ++ GSYRRG A
Sbjct: 412 KAHLTQAQRIGVDHYDDFLQRIPRKEVEMHGEIVRRAVVKVNPGMQVIISGSYRRGAADS 471
Query: 374 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
GD+DV+I PD + + + L + FL+ L ++ + + G
Sbjct: 472 GDIDVLITQPDATIEQIRAMMMDTVIPDLFQQGFLQASLAVTSRGDGS------KWHGAS 525
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
P + R+D P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 526 KLPDSRVWRRLDLLFVPGSEIGAALIYFTGNDIFNRSMRLLARKKGMRLNQRGLYADVLR 585
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + A L+ E+ +F+ LG PW P +R
Sbjct: 586 GPQQTKMNAGRLLEGRDERRIFEILGVPWRPPEQR 620
>gi|426359503|ref|XP_004047012.1| PREDICTED: DNA polymerase beta [Gorilla gorilla gorilla]
Length = 353
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 179/348 (51%), Gaps = 61/348 (17%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLD---------------------------------- 309
+ V GIGP+ A+K ++G +TL+
Sbjct: 81 NFLTRVSGIGPSAARKFVDEGIKTLEGSQLDSCPVKGHLNGTESLLDLIWDVMTILKLKN 140
Query: 310 -DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
DL KNED L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+R
Sbjct: 141 ADLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFR 200
Query: 368 RGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV 423
RG S GD+DV++ HP S L + V++L+++ F+ + L G
Sbjct: 201 RGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGE 250
Query: 424 DTYFGLCTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+ G+C P +E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+
Sbjct: 251 TKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFT 310
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+++ + P G GV A L D+EK++FD++ + + EP +R+
Sbjct: 311 INEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 352
>gi|340520975|gb|EGR51210.1| DNA polymerase [Trichoderma reesei QM6a]
Length = 743
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 180/374 (48%), Gaps = 46/374 (12%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N E+ K+ + Y + R+ +Y KAI +++ KI + ++ LP IG+
Sbjct: 372 NQGNPNSRTIEVLQKMNSYYERTNDQWRTMAYRKAISTLKQQTVKITTEEEAYRLPSIGR 431
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ I+EIVTT KL +LE+ E++ + F ++G+G A++ +G RTLDD++
Sbjct: 432 RLAQKIEEIVTTDKLRRLEYAEREPSDHALQAFLGIYGVGNKVAEQWIAQGWRTLDDVRK 491
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
LT SQR+GL++++D+ TRIPR EV + ++ +A + V ++ GGSYRRG S
Sbjct: 492 HAKLTPSQRIGLEHYEDLNTRIPRSEVTALGEVVMRAAGRIDARVQVIVGGSYRRGAESS 551
Query: 374 GDLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
D+D+++ P ++ K FL++ V +L+ FL L S + G D + G C
Sbjct: 552 HDIDLIVTRPGTEAAADLKPFLNELVDRLERDGFLVARLASSRAA--GGDGS--KWHGCC 607
Query: 431 TYP---------------------------------------GRELRHRIDFKVYPRDIY 451
P R + RID + P
Sbjct: 608 VLPETAETNNNNDNSNDDDDDDDDDRGRSKGKSRSRSDDAGHRRPVWRRIDILLVPEAEL 667
Query: 452 AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEV 511
LI +TGND+ NR +RLLA KG RL+ GL+ + V +++ E+ +
Sbjct: 668 GAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYRNVLRGPARIKVTEGEAVESRDERRI 727
Query: 512 FDFLGFPWLEPHER 525
F+ LG W EP ER
Sbjct: 728 FEILGVKWREPWER 741
>gi|340727567|ref|XP_003402113.1| PREDICTED: DNA polymerase beta-like [Bombus terrestris]
Length = 336
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 186/339 (54%), Gaps = 28/339 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+++ + +L N R + ++ + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSKNIYKYNAYRKAASTLSTLSERVKSGQEARKLPGIGEKIAK 73
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 316
I E ++TGKL KLE KDE I+L V GIGP A++L + G +TLDDLK +++
Sbjct: 74 KIDEFLSTGKLQKLEDINKDESNVAINLLTRVSGIGPTKAKELVDSGIKTLDDLKKHQEK 133
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L H Q++GLKYF+D + IPR E+EQ+E++++ + ++ E +I GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKGIPRKEIEQIEKIIKDSIVKLNKEYVITICGSYRRGKEESGDI 193
Query: 377 DVVIMHP------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
DV++ HP K L V+ L++ K LI +T S G + G+C
Sbjct: 194 DVLLTHPTYTSKEKESKKKTSLKDVVECLEKRK-----LIVNTIS-----LGQTKFMGVC 243
Query: 431 TYPGRELR--HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
P + + R+D ++ P D Y ++ +TGND+ N+ +R A K Y L++ L T
Sbjct: 244 QIPSNDKKPFRRLDIRLAPYDQYYCAVLYFTGNDLFNKSMRAHALEKNYTLNEYTLKRLT 303
Query: 489 -YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G+ G+ + K E+++F L P+ EP +RN
Sbjct: 304 PEGTPGE-------AEKIACEEDIFRILKLPYKEPKDRN 335
>gi|259488449|tpe|CBF87890.1| TPA: DNA polymerase POL4, putative (AFU_orthologue; AFUA_1G10480)
[Aspergillus nidulans FGSC A4]
Length = 642
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 188/390 (48%), Gaps = 15/390 (3%)
Query: 144 AESKGDVETNALSEAPNSPMSSESLT---NTLSTASASPDFSSHHITDPSLLYNPPDLNK 200
A K ET+ S++P + S L+ N ++ S NP N
Sbjct: 262 AAEKSGYETSDESQSPPAKTKSRKLSDGQNGVARCWQQKFVCMQKHDSTSSAQNP---NA 318
Query: 201 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 260
E+ ++++ Y + R+ +Y KAI + K+ S + +PGIG+ + D I+
Sbjct: 319 RTIEVLQQMLDYYTRTADHWRTLAYRKAISALRSQSKKVLSRSEAIRIPGIGERLADKIE 378
Query: 261 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 320
EIV T +L +L++ + R + + V+G G A + +G+R+L+DL+ + SLT +
Sbjct: 379 EIVLTNRLRRLDNTSNTVEDRLLQTYLGVYGAGITVASRWIAQGYRSLEDLRTKASLTQA 438
Query: 321 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 380
QR+GL ++ D +IPR EV+ +++ P++ ++ GGSYRRG A+ GD+D++I
Sbjct: 439 QRIGLDHYFDFSQQIPRTEVQAHGNFVRRVVRMESPDMQVIIGGSYRRGAATSGDIDLII 498
Query: 381 MHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGREL 437
PD + L V KL + FL+ L +T EG+ + G P +L
Sbjct: 499 TRPDATIEEIRTLMLDNVVPKLFQQGFLQASLA-ATCRGEGSK-----WHGASKLPDGQL 552
Query: 438 RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
RID P LI +TGND+ NR +RLLA K RL+ GL+ + + V
Sbjct: 553 WRRIDLLFVPGAELGAALIYFTGNDIFNRSIRLLASKKLMRLNQRGLYADVPRASQRTKV 612
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
L+ E+ +F LG PW P RN
Sbjct: 613 NPGRLLESRDERRIFKILGVPWRPPEHRNC 642
>gi|326932793|ref|XP_003212497.1| PREDICTED: DNA polymerase beta-like [Meleagris gallopavo]
Length = 298
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 163/287 (56%), Gaps = 26/287 (9%)
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 309
G+G + + I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+
Sbjct: 27 GVGAKIAEKIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLE 86
Query: 310 DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
DL KNE LTH QR+GLKYF+D + RIPR E+ QM+ ++ K E V P I GS+RR
Sbjct: 87 DLRKNEHKLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEVENVDPNYIATVCGSFRR 146
Query: 369 GKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD 424
G S GD+DV++ HP S L + V++L+++ F+ + L G
Sbjct: 147 GAESSGDMDVLLTHPTFTSESSKQSKLLHQVVEQLEKVHFVTDVL----------SKGDT 196
Query: 425 TYFGLCTYPGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+ G+C P ++ RID ++ P+D Y G++ +TG+D+ N+ +R A G+ +
Sbjct: 197 KFMGVCQLPNKDDGTSYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTI 256
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
++ + P G GV A +L + EK++FD++ + + EP +R+
Sbjct: 257 NEYTIRPL-----GVTGV-AGEALPVECEKDIFDYIQWKYREPKDRS 297
>gi|425779219|gb|EKV17296.1| DNA polymerase POL4, putative [Penicillium digitatum PHI26]
gi|425779475|gb|EKV17527.1| DNA polymerase POL4, putative [Penicillium digitatum Pd1]
Length = 547
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 169/353 (47%), Gaps = 22/353 (6%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
F+ DP + P N E+ +++ Y + R +Y KAI V+ K P KI
Sbjct: 207 FACMQKFDPDTKFGNP--NNRTIEVLQQMLEYYTQTADQWRVMAYRKAINVLRKQPNKIA 264
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ Q + +PGIG+ + D I+EIV T +L +LE+ + I F V+G G A K
Sbjct: 265 TRAQARAIPGIGERLADKIEEIVLTNRLRRLENATHTPEDLIIKEFLGVYGAGLPQASKW 324
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
+G+R+L DL LT QR+G++ D RIPR EVE +++K + V ++ +
Sbjct: 325 VAQGYRSLKDLLEMAPLTKQQRIGVERHSDFAQRIPRKEVEAHGAIVRKVVQTVDRDMQV 384
Query: 361 LCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ GGSYRRG +CGD+D +I P + L V L FL+ L STH ++
Sbjct: 385 IIGGSYRRGALTCGDVDCLITKPGASLEQIRTMMLGLVVPILFNSGFLQASLAISTH-QD 443
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
G+ + G PG L RID P LI +TGND+ NR +RLLA KG
Sbjct: 444 GS-----KWHGASALPGTTLWRRIDLLFVPDAEIGAALIYFTGNDMFNRSMRLLARKKGM 498
Query: 478 RLDDTGLFPATYGS-----GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ GL+ + G + V R E+ +F LG PW P R
Sbjct: 499 CLNQKGLYGDVLRNQQVKLNGGRLVEGR------DERRIFAVLGVPWRPPEHR 545
>gi|169607575|ref|XP_001797207.1| hypothetical protein SNOG_06846 [Phaeosphaeria nodorum SN15]
gi|160701441|gb|EAT85497.2| hypothetical protein SNOG_06846 [Phaeosphaeria nodorum SN15]
Length = 766
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 179/352 (50%), Gaps = 12/352 (3%)
Query: 180 DFSSHHITDP-SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFK 238
+ ++ DP S Y+ + N +I ++ Y + + R+ +Y K I ++K K
Sbjct: 419 NLNTFQCMDPGSNGYSSDNPNARTIQILDEMCKHYDKMQDQWRTIAYRKGITTLKKQTTK 478
Query: 239 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
I ++ Q LP IG+ + D I+EIV T +L KL+ + D + LF V+G G A
Sbjct: 479 IVTSKQAAALPFIGQRLADKIEEIVLTDRLRKLDSTKDDPLDSVLRLFLGVYGAGLVQAN 538
Query: 299 KLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 358
K + G+RTL+DL+ + LT S R+GL++++D TRIPR EVE ++ A ++ PE
Sbjct: 539 KWIQAGYRTLEDLETKAKLTDSHRVGLEHYNDFNTRIPRSEVEAHGAAVKAALAQIDPEF 598
Query: 359 IILCGGSYRRGKASCGDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
GSYRRG GD+D++I P V +L FL+ L S +
Sbjct: 599 SATIMGSYRRGANDSGDIDMLITCPGASLSMLRTVVFDSLVPQLFSAGFLKASLATSRSN 658
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
+ +G + C + R R+D + P + LI +TGND+ NR +RLLA K
Sbjct: 659 DP---TGTKWHGASCLQTSKVWR-RMDLLLVPEEEMGAALIYFTGNDIFNRSIRLLARKK 714
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFD--TEKEVFDFLGFPWLEPHER 525
RL+ GL+ G++G + + + +EK++F+ LG PW EPHER
Sbjct: 715 NMRLNQKGLYKDV--ERGRRGEKLNEGVLVEGRSEKKIFEVLGVPWREPHER 764
>gi|440637853|gb|ELR07772.1| hypothetical protein GMDG_00395 [Geomyces destructans 20631-21]
Length = 784
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 165/330 (50%), Gaps = 7/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N I ++ Y + + R Y KAI ++K I +A + LP IG+ + D
Sbjct: 457 NARTISILQEMAAYYTRMDDTWRPIGYRKAITTLKKQNKLISTAGEAVKLPAIGQRIADK 516
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV T KL +L++ + D + LF ++G+G A A ++G+ TL+DL SLT
Sbjct: 517 IEEIVHTDKLRRLDNTKSDRNDMILQLFLGIYGVGIAQATTWLQQGYTTLEDLLAHASLT 576
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QRLG+ ++ D +TRIPR EV + +++ + + + GSYRRG SCGD+DV
Sbjct: 577 DNQRLGIDHYQDFQTRIPRAEVSALAKIVADTARGIDRGIEAIVAGSYRRGAESCGDIDV 636
Query: 379 VIMHPDRKSHKGFLSKYVKKL-KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR-- 435
++ KS S+ L K + LR + G + G C PG+
Sbjct: 637 LLT----KSGTSACSELTPLLYKLVSQLRASGMLVAPLSVGRTESSSKWHGCCVLPGQGP 692
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RIDF + P L+ +TGND+ NR +RLLA +G RL+ GL+ G+
Sbjct: 693 PIWRRIDFHLAPASELGAALLYFTGNDIFNRSIRLLASKRGMRLNQRGLYKDVMRGPGRV 752
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ ++ EK++F LG PW P ER
Sbjct: 753 KLNEGELVEGADEKKIFAELGVPWRPPEER 782
>gi|326476213|gb|EGE00223.1| DNA polymerase POL4 [Trichophyton tonsurans CBS 112818]
Length = 650
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 166/330 (50%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ ++++ Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 325 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVTKSQALKIKGIGERLAAK 384
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T +L +LE + + +S F ++G+G A K +G+++LDDLK +LT
Sbjct: 385 IEEIAWTNRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKTRANLT 444
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q++G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 445 TNQKVGIERYDDFQKRIPREEVEAHGAIVRQAVLAMDSSYTVIIGGSYRRGAADSGDIDL 504
Query: 379 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I + H ++ V +L E FL+ L S+ + + G PG
Sbjct: 505 IITKEGVSLQVIHDQIMTVVVPQLFERGFLKTGLAVSSRVDGS------KWHGASALPGN 558
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID P D LI +TGND+ NR LRLLA KG L+ GLF G+
Sbjct: 559 PVWRRIDLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQKGLFSDIMRGPGRV 618
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ A L+ EK +F+ L PW P R
Sbjct: 619 KLNAGHLLESRDEKRIFELLAVPWRPPEHR 648
>gi|392563198|gb|EIW56377.1| hypothetical protein TRAVEDRAFT_59518 [Trametes versicolor
FP-101664 SS1]
Length = 743
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 148/270 (54%), Gaps = 10/270 (3%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R SY KAI + K P +I+S ++ + GIG I EIV TG L +++H E+ E V
Sbjct: 434 RVMSYNKAISALRKYPARIKSYEEAVAIRGIGDKTARKIMEIVETGNLRRIQH-ERTEDV 492
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIPR 337
++ F V+G+G +TA+K Y G RTL+D+ K L+ Q +GL+Y+ DI TRIPR
Sbjct: 493 ASVQTFLGVYGVGASTARKWYNSGCRTLEDVAARKGGIKLSTEQEIGLRYYQDINTRIPR 552
Query: 338 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP--DRKSHKGFLSKY 395
EV ++ ++ A ++ P V I GSYRRGK CGD+DV+I D K+H+G L +
Sbjct: 553 AEVAEIYAKVKAAALKIDPNVFIEVMGSYRRGKPDCGDIDVLITRCTDDGKTHQGVLRRL 612
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGL 455
+K+L + +DL + D Y GLC LR RID P L
Sbjct: 613 LKELHRQGVVTDDLCLP----DDFDDLELVYRGLCRRDSHSLRRRIDILTVPWKSRGAAL 668
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ +TG+D+ NR LRL A GY L+ GL+
Sbjct: 669 LYYTGDDIFNRSLRLKANKMGYSLNQRGLY 698
>gi|400603358|gb|EJP70956.1| DNA polymerase POL4, putative [Beauveria bassiana ARSEF 2860]
Length = 825
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 187/369 (50%), Gaps = 26/369 (7%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
F+ H SL + N ++ +++ Y + R +Y +AI + + P KI
Sbjct: 457 FACAHAG--SLDAHASSANARTVQVLQAMLSYYERTSDTWRVMAYRRAIATLRRQPTKIS 514
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE-----KVRTISLFGEVWGIGPA 295
SA + LPG+G+ + I+EI TT +L +LEH E+D+ + LF V G+GPA
Sbjct: 515 SAREALRLPGVGQRLAAKIEEIATTDRLQRLEHAERDDDDGGGANAALRLFLGVHGVGPA 574
Query: 296 TAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 352
A + G RTL+D+ +DS LT QRLG++ ++D+ T+IPR EVE + +++
Sbjct: 575 LAAQWAAWGMRTLEDVVRKDSGIRLTPGQRLGIERYEDLHTKIPRDEVEALAAVVRAEAA 634
Query: 353 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---FLSKYVKKLKEMKFLREDL 409
+ V I GGSYRRG GD+D+++ PD FL + V +L+ F+ L
Sbjct: 635 RIDAAVEITIGGSYRRGAPVSGDVDMMLSRPDTTCAADLAPFLRELVTRLQRSGFIVATL 694
Query: 410 IFSTHSEEGTDSGVDTYF-GLCTYPGRELR-HRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
S+ + S + + G C PG R R+D V P LI +TG+DV NR
Sbjct: 695 AGGGGSDSSSSSSSSSIWQGCCVLPGGSGRFRRMDLLVVPETEMGGALIYFTGDDVFNRS 754
Query: 468 LRLLAESKGYRLDDTGLF------PATYGSGGKQGVRARTSLKFD-----TEKEVFDFLG 516
LRLLA +G RL+ GL+ A G G++G R +++ D E+ +F+ LG
Sbjct: 755 LRLLARKRGMRLNQKGLYKRIESAAAAAGENGRRGRRGMVAVEGDLVEGRCERRIFEILG 814
Query: 517 FPWLEPHER 525
W EP ER
Sbjct: 815 VEWREPTER 823
>gi|326480832|gb|EGE04842.1| DNA polymerase POL4 [Trichophyton equinum CBS 127.97]
Length = 650
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 166/330 (50%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ ++++ Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 325 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVTKSQALKIKGIGERLAAK 384
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T +L +LE + + +S F ++G+G A K +G+++LDDLK +LT
Sbjct: 385 IEEIAWTNRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKTRANLT 444
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q++G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 445 TNQKVGIERYDDFQKRIPREEVEAHGAIVRQAVLAMDSSYTVIIGGSYRRGAADSGDIDL 504
Query: 379 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I + H ++ V +L E FL+ L S+ + + G PG
Sbjct: 505 IITKEGVSLQVIHDQIMTVVVPQLFERGFLKTGLAVSSRVDGS------KWHGASALPGN 558
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID P D LI +TGND+ NR LRLLA KG L+ GLF G+
Sbjct: 559 PVWRRIDLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQKGLFSDIMRGPGRV 618
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ A L+ EK +F+ L PW P R
Sbjct: 619 KLNAGHLLESRDEKRIFELLAVPWRPPEHR 648
>gi|453089221|gb|EMF17261.1| Nucleotidyltransferase [Mycosphaerella populorum SO2202]
Length = 619
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 169/331 (51%), Gaps = 10/331 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N + EI ++ Y G++ R +Y KAI + + KI + + LP IG + +
Sbjct: 293 NTDTIEILQQMAEHYGQTGDEWRVRAYRKAIATLRRHTVKINTKAEAGALPNIGPRLAEK 352
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 317
I+EIV T +L +L+H + + + F V+G G A + G+RTL +L + SL
Sbjct: 353 IEEIVFTRRLRRLDHARAEPHDQILQTFLGVYGAGIKQATEWVNAGYRTLGELLEKAPSL 412
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T +Q +G+ +++D TRI R EVE+ ++ A + P ++ GGSYRRG GD+D
Sbjct: 413 TPNQMIGIAHYEDFATRISRSEVEKHGSFVRTALHRLDPRCEVIIGGSYRRGAKDSGDID 472
Query: 378 VVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
+I PD + L + V +L E FL +L S+ D G + G PG
Sbjct: 473 CIITRPDTGAAHLRNIVLGQLVPQLTESGFLVANLAMSSR-----DDG-SKWHGASCLPG 526
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
++ R+D + P D LI +TGND+ NR LRLLA +KG RL+ GLF +
Sbjct: 527 SKIWRRLDLLLVPSDEMGAALIYFTGNDIFNRSLRLLASTKGMRLNQRGLFKDVLRGSNR 586
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + T ++ EK++F+ LG P+ P R
Sbjct: 587 ERLCQGTLVEGKDEKKIFEALGVPFRPPEHR 617
>gi|225713628|gb|ACO12660.1| DNA polymerase beta [Lepeophtheirus salmonis]
Length = 340
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 184/342 (53%), Gaps = 27/342 (7%)
Query: 197 DLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
+LN + E+ +L + + G +S +Y KA V+ K +I S D+ + L GIG +
Sbjct: 15 NLNADFCELLNELATFEQNVNGNKFKSNAYRKAANVLSKHSTRITSGDEARKLDGIGAKI 74
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE-KGHRTLDDLKN- 313
I E + TG L KL++ D+K I+L V GIGP A++L E +G RT++DL+
Sbjct: 75 ALKIDEFIETGNLRKLDNIRTDDKANAINLLTRVIGIGPVKARELVENEGIRTVEDLRKI 134
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
E LTH+Q++GL++FDD + RIPR+EV+ + LL++ E+ + GSYRRG +
Sbjct: 135 EGKLTHAQKVGLRHFDDFEERIPRNEVDSLHLLLREHIGELDKTYTMTICGSYRRGLPTS 194
Query: 374 GDLDVVIMHP--------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT 425
GD+DV++ H D + L+K V L++ KF+ + L +H G
Sbjct: 195 GDVDVLLTHDSFTSSSTNDSQKKGHHLAKVVSSLQKAKFITDTL---SH-------GPTK 244
Query: 426 YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ G+C R+D + P+D Y G++ +TG+D+ N+++R A KG+ L++ L
Sbjct: 245 FMGVCRLTSDSKYRRLDILLLPKDQYYCGVLYFTGSDMFNKKMRAHALEKGFTLNEHSLR 304
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
P + L +E+++FD++ F + +P ER+L
Sbjct: 305 PI------DEAQLPLDPLPVSSEEDIFDYISFDYKDPEERSL 340
>gi|393243723|gb|EJD51237.1| Nucleotidyltransferase [Auricularia delicata TFB-10046 SS5]
Length = 324
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 16/314 (5%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R SY KAI + + P +I+SA++ + L G+GK D I EI+ TG L +L+ E++
Sbjct: 15 RVISYRKAISALRRHPTRIKSAEEAERLHGVGKKTADKIMEILGTGNLQRLK-TEREHGH 73
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPR 337
++LF ++ +G A + Y KG RTLDD++ L +Q +GL+Y+DD+ R+PR
Sbjct: 74 DVVALFRGIYSVGSKIAWEWYAKGLRTLDDVRERKGGIRLNSAQEIGLRYYDDLNERMPR 133
Query: 338 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKY 395
E ++ ++++ ++ P + + GSYRR K +CGD+D++I D K+H G L K
Sbjct: 134 AEAGEIFGMIKQRVLDIDPNLTLEIMGSYRRRKETCGDIDILITRNPSDGKTHAGVLRKL 193
Query: 396 VKKLKEMKFLREDLIF--STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAF 453
++ L L E+L TH+ E Y G+C R RID P + +
Sbjct: 194 LRVLHADGILTENLSMPHDTHALEA------KYMGICRRDATSKRRRIDILTIPFEQWGG 247
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEV 511
L+ +TG+D+ NR +RL A G L+ GL+ K + F TEKE+
Sbjct: 248 ALLYFTGDDIFNRSMRLKANKMGMSLNQRGLYRNVIRDPTKWNNKLDDGELFASKTEKEI 307
Query: 512 FDFLGFPWLEPHER 525
FD LG PW EP ER
Sbjct: 308 FDALGVPWQEPWER 321
>gi|20067709|emb|CAD29096.1| chimeric DNA-directed DNA polymerase bf2-8 [synthetic construct]
Length = 335
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 188/346 (54%), Gaps = 39/346 (11%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ----KAGEEVLPEVI------ILCGGS 365
L H QR+GLKYF+D + RIPR E+ Q ++++ + E ++I I+ GS
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREELIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGS 190
Query: 366 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT 425
RR + D+D++I+ P++K K L + I T S+ G
Sbjct: 191 LRREEKMLNDVDLLIIVPEKKLLKHVLPNIRR-----------FITDTRSK-----GETK 234
Query: 426 YFGLCTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 480
+ G+C P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ ++
Sbjct: 235 FMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTIN 294
Query: 481 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ + P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 295 EYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|326437288|gb|EGD82858.1| DNA polymerase beta [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 174/348 (50%), Gaps = 35/348 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
++N +I +L + + + + +Y KA I P +I S + K L G+G+ +
Sbjct: 22 NVNADICAFLNELADYEKNVSRHIHKHNAYRKASRAIAAHPSRISSGKEAKALQGVGEKI 81
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I E ++TGKL KLE D + I L V G GPA A+K ++G TL++L +
Sbjct: 82 AKKIDEFLSTGKLKKLEDIHADPTSKAIQLIASVVGFGPAAARKFVDQGVTTLEELAKQS 141
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
LT +QR+GLK+ D + RIPR EV+++ + EV P++ GSYRRG +S GD
Sbjct: 142 GLTSTQRIGLKHHHDFEERIPRDEVDRLRKQAFAIISEVDPKLTAEVCGSYRRGASSSGD 201
Query: 376 LDVVIMHPDRKS-HK------------GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
+D+++ HP+ S HK G L+K V +++ KF+ + L G
Sbjct: 202 IDILMTHPEFTSEHKDEKGKITKPRFAGLLAKVVAAMQKHKFVTDSL----------SCG 251
Query: 423 VDTYFGLC-----TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
+ G+C G RID + +P D Y L+ +TG+D LN+ +R A G+
Sbjct: 252 QTKFMGVCRDREAPKAGEGKYRRIDVRFWPADQYPLALLYFTGSDELNKDMRRKAIDLGF 311
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ + P G G G +L EK+VFD+L +LEP ER
Sbjct: 312 HLNEYAIRP--MGEKGTMG----DALPVTCEKDVFDYLDMKYLEPSER 353
>gi|296414489|ref|XP_002836932.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632777|emb|CAZ81123.1| unnamed protein product [Tuber melanosporum]
Length = 777
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 178/339 (52%), Gaps = 32/339 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ EI ++ Y L + RS Y KAI ++K +I A++ + LPGIG +
Sbjct: 457 NQRTIEILSEMQRYYEMLKDTWRSLGYRKAIATLKKQDHRIRFANEARELPGIGDRIALK 516
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV T +L +L++ + D + + LF ++G+G AQK + G+RTLDD+K LT
Sbjct: 517 IEEIVRTDRLRRLDYTKMDPEDEALRLFLGIYGVGGVKAQKWVDAGYRTLDDIKAHARLT 576
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
SQ+ G+++++D + RIPR EV+Q + + E+ E+ + GSYRRG CGD+D+
Sbjct: 577 SSQQTGIEHYEDFQQRIPRDEVKQHGDIAMRVAHEIDAELKLEILGSYRRGAKDCGDIDI 636
Query: 379 VIMHPDRKSHK--GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG--LCTYPG 434
+I +++ G +S F L + G+DSG + + + P
Sbjct: 637 MITKEGAEAYAITGRIS------SPSIFFGFQLYIAI--PRGSDSGTKWHGASKISSGPW 688
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
R RIDF V P L+ +TGND+ NR LRLLA KG+RL+ +GL+ K
Sbjct: 689 R----RIDFLVVPWAERGAALLYFTGNDIFNRSLRLLASKKGFRLNQSGLY--------K 736
Query: 495 QGVRARTSLKF--------DTEKEVFDFLGFPWLEPHER 525
+R + KF ++E+++F+ LG P+ P R
Sbjct: 737 DVLRGKDRTKFTDGALMEGESEEKIFEILGVPYRPPEHR 775
>gi|20067677|emb|CAD29080.1| chimeric DNA-directed DNA polymerase bf4-2 [synthetic construct]
Length = 340
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 191/342 (55%), Gaps = 26/342 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMER---LLQKAGE--EVLPEVIILCGGSYRRGK 370
L H QR+GLKYF+D + I ++ R + G+ ++L + I+ GGS+RRG
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGGSFRRGA 190
Query: 371 ASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLR-EDLIFSTHSEEGTDSGVDT 425
S GD+DV++ HP+ S L + V++L++++F+R + L FS +
Sbjct: 191 ESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFIRIKGLSFSVKVCGERKCVLFI 250
Query: 426 YFGLCTYPGRELRHRID-FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
+ TY ++D F P+D Y G++ +TG+D+ N+ +R A KG+ +++ +
Sbjct: 251 EWEKKTY-------QLDLFTALPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTI 303
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 304 RPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 339
>gi|443726229|gb|ELU13471.1| hypothetical protein CAPTEDRAFT_183536 [Capitella teleta]
Length = 299
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 167/309 (54%), Gaps = 22/309 (7%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y KA I K P KI S + K L G+G + I E + TGKL K+E ++ I
Sbjct: 6 AYRKAAGAIAKHPEKINSGKEAKKLEGVGDKIGKKIDEFIATGKLVKIEKIRANDTNMAI 65
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
+ V GIGPA AQKL +G +++DL KN++ L Q +GLK+F+D + RIPR E+ Q
Sbjct: 66 NALTRVTGIGPAAAQKLVSEGIMSIEDLRKNQEKLNKQQVIGLKHFEDFEERIPREEMLQ 125
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP----DRKSHK-GFLSKYVK 397
++ K E+V + GS+RRG ++ GD+D+++ HP D K+ + L V+
Sbjct: 126 LQEFSLKQIEKVDSDYAAEVCGSFRRGASNSGDIDILLTHPSYTSDSKTKQPKLLHDVVR 185
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIA 457
+L+ F+ + L G + G+C Y L RID ++ P D Y L+
Sbjct: 186 QLESTGFVTDTLSL----------GDSKFMGVCRYNSEHLFRRIDIRLIPHDQYFCALLY 235
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
+TG+D+ N+ +R +A +G+ L++ + P GS G G +L +E++VFD++G
Sbjct: 236 FTGSDMFNKNMRTVALEQGFTLNEYCIRPV--GSTGIPG----EALPVSSEEDVFDYVGM 289
Query: 518 PWLEPHERN 526
+ +P ERN
Sbjct: 290 KFKKPSERN 298
>gi|336390909|dbj|BAK40153.1| DNA polymerase beta [Aurelia sp. 1 sensu Dawson et al. (2005)]
Length = 334
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 164/308 (53%), Gaps = 11/308 (3%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
+S Y KA ++ P KI S + + L GIG + I E + TG L KLE D
Sbjct: 35 KSKVYRKAASILANHPTKITSGAEARKLDGIGDKIGKKIDEFIKTGTLQKLEKIRVDSSA 94
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
I+ V GIGPA A+ L + G ++++L KN D L H Q++GLK+F+D + RIPR E
Sbjct: 95 VAINQLTRVSGIGPAAARNLVDDGICSIEELKKNNDKLNHHQKIGLKHFEDFEKRIPRSE 154
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH-KGFLSKYVKK 398
+++ + + + E GSYRRG S GD+DV+I HP S KG K K
Sbjct: 155 MDKHQEFIIDEISKHDKEFTACICGSYRRGAESSGDIDVLITHPTYTSKTKG---KGAGK 211
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
++K L +DL + + + G + G+C P E R+D ++ P D Y G++ +
Sbjct: 212 NSKLKKLVDDLTKANYITDTLSLGEAKFMGVCKLPDNESYRRLDLRLIPGDQYYCGVLYF 271
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+D+ N+ +R A KG+ +++ + P GS G G + ++EK+VFD LG
Sbjct: 272 TGSDIFNQTMRQEALDKGFTINEYCIRPV--GSTGAPG----EPIPVESEKDVFDILGKE 325
Query: 519 WLEPHERN 526
++EP +RN
Sbjct: 326 YVEPTDRN 333
>gi|156052889|ref|XP_001592371.1| hypothetical protein SS1G_06612 [Sclerotinia sclerotiorum 1980]
gi|154704390|gb|EDO04129.1| hypothetical protein SS1G_06612 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 845
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 180/375 (48%), Gaps = 53/375 (14%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
P+ N++ EI ++ Y +G+ RS SY +A ++ I + D+ +P IG+ +
Sbjct: 480 PNPNQHTIEILSRMREYYERIGDQWRSRSYLQACCQLKNQLTLIRTYDEAIQIPKIGERI 539
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I+ IV TG+L +LE+ E + + + LF ++G+ A K +GHRT DL+
Sbjct: 540 AKKIEGIVLTGRLLRLENAEAEPDDKILKLFMGIYGVNFKLASKWISQGHRTFADLEQNI 599
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L+ SQ++G+ +++D++ RIPR E+E++ + K + + P++ I GGSYRRG S GD
Sbjct: 600 KLSPSQQIGITHYEDLQLRIPRAEIEELGTHITKTAQSLDPDIEITIGGSYRRGAKSSGD 659
Query: 376 LDVVIMHPDRKSHK-------GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
+D++I K+H FL+ VK L + +FL L H+ EG+ + G
Sbjct: 660 IDIIIT----KAHTISTTQLFPFLTSLVKILTDSQFLVAALAVP-HNNEGSK-----WHG 709
Query: 429 LCTY---------------PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
C P RIDF + P LI +TG+D+ NR +RLLA
Sbjct: 710 CCVLPSSSSSPSSPTTHRDPHHNPWRRIDFLIVPSTQLGAALIYFTGDDIFNRSMRLLAG 769
Query: 474 SKGYRLDDTGLFPATYGS---------------------GGKQGVRARTSLKFDTEKEVF 512
KG RL+ GLF ++ V ++ EK +F
Sbjct: 770 KKGMRLNQRGLFKDVMRGGWSGGGEGNEVGRGGGSGGRWNSRKKVTDGMLVEGRDEKRIF 829
Query: 513 DFLGFPWLEPHERNL 527
+ LG PW EP ER L
Sbjct: 830 EILGVPWREPWERVL 844
>gi|328709018|ref|XP_001950059.2| PREDICTED: DNA polymerase beta-like [Acyrthosiphon pisum]
Length = 336
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 190/359 (52%), Gaps = 27/359 (7%)
Query: 170 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 229
N +S A D ++ + L D KN+ NIY+ S +Y KA
Sbjct: 4 NKMSKRKAPSDSTNPNHDFCEFLIELADYEKNVAR------NIYK-------SNAYRKAA 50
Query: 230 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 289
+ K +I+S ++ + L GIG + I E + TGKL KL++ D+ +I V
Sbjct: 51 SALAKHGKRIKSGEEAQKLDGIGDKISKKIDEFLETGKLKKLDNIRNDDASVSIKELTRV 110
Query: 290 WGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
GIGPA A++LY+ G +D L KN+D L H Q LGLKY +D + +IPR+EV ++E++++
Sbjct: 111 SGIGPAKAKELYDSGVTNIDILLKNQDKLNHHQILGLKYLNDFEEKIPRNEVIEVEQIIK 170
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
K + P+ + GSYRRGK GD+D +I HP SH G K K + L+++
Sbjct: 171 KTLHNLDPKYKVTICGSYRRGKEFSGDIDTLISHPSFMSH-GLKKKSDKLQVVVDILKKN 229
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+ + E G + G+C + R+D ++ P D + ++ +TG+D+ N+++
Sbjct: 230 NLIT----ETISLGEAKFMGVCKV--NRISRRLDIRLNPYDQFYCAVLYFTGSDLFNKQM 283
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
R A ++G+ L++ L P GS G G ++ +EK++FD++ +P+ +P ERN+
Sbjct: 284 REHAINQGFTLNEYTLRPM--GSTGIPG----EPVEITSEKDIFDYIDYPYKKPEERNI 336
>gi|156370197|ref|XP_001628358.1| predicted protein [Nematostella vectensis]
gi|156215332|gb|EDO36295.1| predicted protein [Nematostella vectensis]
Length = 336
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 175/349 (50%), Gaps = 36/349 (10%)
Query: 196 PDLNKN------ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 249
PD N N +TE+ N+ R + + +Y KA V+ K KI+ + + LP
Sbjct: 7 PDQNPNSEFCDFLTELADYEKNVTRQI---HKYNAYRKAAAVLAKHSTKIKDGAEARKLP 63
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 309
GIG + I E + TGKL KLE KDE V GIGPA A+KL E G +L+
Sbjct: 64 GIGDKIGKKIDEFIKTGKLEKLEKIRKDEGTSITKELTRVSGIGPAAAKKLIEDGVSSLE 123
Query: 310 DLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
DLK L H Q++GLKY D+ +TRIPR E+ ++ ++ ++ + GS+RR
Sbjct: 124 DLKRVRGRLNHHQQIGLKYVDEFETRIPREEMIKLRDIVLVHVKKQDKNLTATVCGSFRR 183
Query: 369 GKASCGDLDVVIMHPDRKS------HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
G S GD+D+++ HPD S K L V L++ F+ + L G
Sbjct: 184 GATSSGDIDILLSHPDYTSSSQNYDKKSLLHGLVHCLEKADFVTDTLSL----------G 233
Query: 423 VDTYFGLCTYPG----RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+ G+C P R L RID ++ P D Y G++ +TG+DV N+++R A KG+
Sbjct: 234 ETKFMGVCILPEERDVRRLHRRIDIRLIPHDQYYCGILYFTGSDVFNKQMRHEALEKGFT 293
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
L++ + P GS G G L +E++VFD +G + P +RN+
Sbjct: 294 LNEYSIRP--LGSTGVPG----EPLPVSSEQDVFDIIGMEYKPPEQRNM 336
>gi|427793003|gb|JAA61953.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 245
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 149/250 (59%), Gaps = 7/250 (2%)
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 337
E + +LF ++WG GP+TAQK ++G R+L++L + +L+ Q++GLK+F D ++P
Sbjct: 1 ENLVAQNLFTKIWGAGPSTAQKWVQQGFRSLEELAAKGNLSSQQKIGLKHFHDFLEKMPS 60
Query: 338 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 397
E + ++KA + P + ++ GSYRRG+A CGD+DV+I HPD KSH+G L K ++
Sbjct: 61 GEAGLIADTVKKAALSIQPALEVIPCGSYRRGRAMCGDVDVLITHPDGKSHEGVLCKILQ 120
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLI 456
L E FL +DL + E G+ Y G+C PG +H R+D V P++ +A L+
Sbjct: 121 ILHESNFLTDDL--AVPHEGGSPR---KYMGVCRLPGEGSKHRRLDIFVVPQEEFACSLL 175
Query: 457 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 516
A+TG+ NR +RLLA KG L+D GL+ A G++ + L TE+ +F+ LG
Sbjct: 176 AFTGSAHFNRSMRLLARRKGMSLNDHGLY-ADVCRTGEEKIGHGKRLPTPTEESIFEHLG 234
Query: 517 FPWLEPHERN 526
+ P ER+
Sbjct: 235 LKYRPPEERD 244
>gi|353238336|emb|CCA70286.1| related to DNA-directed DNA polymerase lambda [Piriformospora
indica DSM 11827]
Length = 545
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 177/349 (50%), Gaps = 29/349 (8%)
Query: 199 NKNITEIFGKLINIYRAL-GEDR--RSFSYYK---------------AIPVIEKLPFKIE 240
N+++ + +L N YR G+D R ++Y K AI I +IE
Sbjct: 200 NQDVVDKLRELANTYRNRPGDDYHWRVYAYSKGDYLKMLTCNLTRSVAIASIRNCKHRIE 259
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
S ++ G+ G+G + I E++ TG L ++ +E+DE+ + +F ++G+G A
Sbjct: 260 SLEEALGIHGVGVKTAEKIMEVIRTGNLKRIR-YEQDERTVIVGIFRGIYGVGTTVAYDW 318
Query: 301 YEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 357
Y +G RTL+D+K LT +Q +G+KY++D+ +R+PR E + + + + +
Sbjct: 319 YSRGLRTLEDVKQRRFGIKLTAAQDIGVKYYEDLASRMPREEAKDIFDQIVTHAHSIDSK 378
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ + GSYRRG+ +CGD+D++I + + L + +KKL E K L DL
Sbjct: 379 LSVEIMGSYRRGEETCGDIDILITRNPEDALE-VLPRLLKKLHEAKILVADL-----GGG 432
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
D Y GLC R+ RID P + LI +TG+D+ NR +RLLA KG
Sbjct: 433 DVDDLEAKYMGLCRRSPRDKVRRIDILTIPYSQWPGALIYFTGDDIFNRSMRLLANKKGM 492
Query: 478 RLDDTGLFPATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ GL+ +Q A T L TE+ +F++LG PW EPH+R
Sbjct: 493 SLNQRGLWTGVVRDHRTRQKTAAGTLLNLPTERAIFEYLGVPWQEPHQR 541
>gi|308808205|ref|XP_003081413.1| DNA polymerase lambda (ISS) [Ostreococcus tauri]
gi|116059875|emb|CAL55582.1| DNA polymerase lambda (ISS) [Ostreococcus tauri]
Length = 589
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 151/549 (27%), Positives = 251/549 (45%), Gaps = 69/549 (12%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD------ 65
AL S + G+R F V +R + L++MG +V E+ VTHV+A +
Sbjct: 77 ALTSASLMEGVRAFFV--NFTKKRAEALGNALIRMGGSVCERADDSVTHVVACEESSALT 134
Query: 66 --LEALLQQSVIRY--QWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTS 121
LE++ ++ V++ +W+ +S + + + IADR SQ TS
Sbjct: 135 KALESIDREDVVKITPEWITESYKQRRPLPVSATNFEPRTRVAVIADRPHSQ---EAATS 191
Query: 122 SDGESSHRKKIKSSTEDVEHFQAESK-GDVETNALSEAPNSPMSSESLTNTLSTASASPD 180
S + +++ E+ + S G + T+ L++ +E L + S S P
Sbjct: 192 SGDSKALAVRVRKERENALAIRRSSGFGTIWTSDLAD-------NEKLEKSRSKFSCQPG 244
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKI 239
+ P + N + ++ + +IY AL + R+ Y A + L F+I
Sbjct: 245 EHNEKAM-------PIECNTKVADLLKGMADIYEDALRDQYRAKQYAAAASALRSLNFEI 297
Query: 240 ESADQVKGLPGIGKS---MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
S + +P + K ++ ++ EI+ TGKL LE V+ + G+GP T
Sbjct: 298 TSINDCDVVPMLKKKDGKIRKYVGEILNTGKLKALEELRARPDVKACLELCGIHGVGPVT 357
Query: 297 AQKLYEKGHRTLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
A+ L+ KG+ T+ DL+ E+ LT +Q++GLKY+++ K RIPR EV + +++A
Sbjct: 358 ARSLFAKGYATVADLRARAPENLLTPAQKIGLKYYEEFKERIPREEVGFIATAVREAANT 417
Query: 354 VLP-EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK------EMKFLR 406
EV C GS+RRGK + GD+DV++ D L + L+ L
Sbjct: 418 FQKDEVHCYCVGSFRRGKETSGDIDVLVECRDYSLANELLMHILSDLRPGGTSPRSGILT 477
Query: 407 EDLIFSTHSEEGTDSGVDTYFGLCTY--PGRE------LRHRIDFKVYPRDIYAFGLIAW 458
+DL+ H TY G+ P ++ + R+D KVY + L+ +
Sbjct: 478 DDLLVGDH----------TYMGVAALLKPLKDDDDKPPIHRRVDIKVYDSESLPTALLYF 527
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+D NR +RL A+ KG+ L D GLF A VRA+ E++VFD LG
Sbjct: 528 TGSDKFNRSMRLWAKKKGFNLQDKGLF-ADRSQAQASRVRAK------GEEDVFDALGLD 580
Query: 519 WLEPHERNL 527
++ P +RN+
Sbjct: 581 YVPPEKRNV 589
>gi|196004564|ref|XP_002112149.1| hypothetical protein TRIADDRAFT_50243 [Trichoplax adhaerens]
gi|190586048|gb|EDV26116.1| hypothetical protein TRIADDRAFT_50243 [Trichoplax adhaerens]
Length = 337
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 175/343 (51%), Gaps = 29/343 (8%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSM 255
++N + +L + + + FS Y KA V+ K P +I S Q K L GIG+ +
Sbjct: 12 NVNAEFCDFLIELADYEKNVNRQMHKFSAYRKAANVLAKHPQRITSGAQAKKLEGIGEKI 71
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I+E + TG L KL D+ I+ V GIGPA A+K ++KG ++++DL+ +
Sbjct: 72 AQKIEEFINTGSLKKLNKIRADDTTVAINELTRVTGIGPAAARKFFDKGIKSIEDLRKQQ 131
Query: 316 S-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L H Q++GL+Y DD + RIPR V + E +++K V + GSYRRG S G
Sbjct: 132 ILLNHHQQIGLRYVDDFEKRIPRKMVTEFEAIIKKNIHSVDTAYTVEVCGSYRRGAESSG 191
Query: 375 DLDVVIMHPDRKSHK------GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
D+D ++ HP S K L + VKKL+ + + + G + G
Sbjct: 192 DIDFLLSHPSYTSDKKIGNKASLLHQVVKKLENAHVITDTI----------SIGNTKFMG 241
Query: 429 LCTYPGRE----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
+C P + + RID ++ +IY GL+ +TG+D+ N+R+R A KG+ L++ +
Sbjct: 242 VCRLPDNDNPDNIHRRIDIRL-DIEIYLCGLLYFTGSDLFNKRMRQTAIEKGFTLNEYCI 300
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
P G+ G G ++ E+++FD + ++EPH+RN
Sbjct: 301 RP--IGTTGVHG----EAIPITCEEDIFDIIQMEYVEPHKRNF 337
>gi|402077951|gb|EJT73300.1| hypothetical protein GGTG_10145 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 868
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 169/351 (48%), Gaps = 35/351 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-FKIESADQVKGLPGIGKSMQD 257
N E+ + + Y + R+ +Y +AI + + ++ + + LPG+G +
Sbjct: 527 NARTIEMLQSMCDFYERTNDHWRTTAYRRAIGTLRRTTDRRVATEEDAARLPGVGPRLAS 586
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 317
I+EI TT +L +LEH + + F V+G G A A++ +G RTLDDL SL
Sbjct: 587 KIEEIATTDRLRRLEHARAEPLDAVLQTFLGVYGAGLAQARRWIAQGFRTLDDLAARASL 646
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T +QR+G++ D+ +RIPR EVE +++++++A V P V ++ GGSYRRG +CGD+D
Sbjct: 647 TPAQRMGVERHADLNSRIPRDEVEALDKVVRRAAAAVDPAVRLILGGSYRRGADTCGDVD 706
Query: 378 VVIMHPDRKSHKG---FLSKYVKKLKE-------MKFLREDLIFSTHSEEGTDSGVDTYF 427
++ + FL + + +L + + LR D G +
Sbjct: 707 FIVTRDGAAAADDLVPFLDELIARLTDAGVVVATVAALRTDR-----------PGGSKWH 755
Query: 428 GLCTYP-------------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
G C P + R+DF + P LI +TGNDV NR +RLLA
Sbjct: 756 GCCVLPRDHHPRAPPAGDSRAPVWRRVDFLLVPEAEMGAALIYFTGNDVFNRSMRLLASK 815
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG RL+ GL+ + V ++ E+ +F+ LG W EPHER
Sbjct: 816 KGMRLNQRGLYRDVMRGPNRVKVTTGELVEGRDERRIFEILGVKWREPHER 866
>gi|47226550|emb|CAG08566.1| unnamed protein product [Tetraodon nigroviridis]
Length = 311
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 163/301 (54%), Gaps = 22/301 (7%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASAIAKYPSKIRNGEEAKKLDGVGAKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E + TGKL KLE D+ +I+L V GIGPA A+K +++G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSTSINLLTRVTGIGPAAARKFFDEGVKTLEDLKKIEH 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H Q++GL YF++ + RIPR E+E+ME L+ K ++ E I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLMYFEEFEKRIPRAEMEKMESLILKELTKIDSEYIGTICGSYRRGAASSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
+D+++ HP S L V L+ + F+ + L G + G+C
Sbjct: 191 IDILLTHPKFTSETDKQPKLLHAVVDHLESIGFVTDTL----------SKGDTKFMGVCQ 240
Query: 432 YP-GRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
G E L RID ++ P+D Y G++ +TG+D+ N+ +R A +G+ L++ +
Sbjct: 241 LQDGDEDEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEQGFTLNEYTIR 300
Query: 486 P 486
P
Sbjct: 301 P 301
>gi|361130658|gb|EHL02408.1| putative DNA polymerase lambda [Glarea lozoyensis 74030]
Length = 653
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 168/332 (50%), Gaps = 6/332 (1%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N + F +L Y + + R+ SY K + KI D+ + + GIG S+
Sbjct: 324 NDDCINAFLELAAFYERIRDTFRNMSYRKGATALRSQTRKITDYDEAREIFGIGHSLATK 383
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I E G+L+KLE+ + D + + F +++G+G + A K ++GH+TL+DL LT
Sbjct: 384 IVEFHRRGRLAKLEYTKLDGRDSIVQKFMKIYGVGASQADKWVDQGHKTLEDLVANVPLT 443
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q++G+ +++D RIPR E+ + ++++A ++ P+V GGSYRRG + GD+D
Sbjct: 444 ENQKIGIAHYEDFNIRIPREEMHALGDIVKQAVAKIDPKVEATMGGSYRRGAKTSGDIDF 503
Query: 379 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
++ P S FL V L+ FL L ++ D+G + G C P
Sbjct: 504 MLTKPGTTSTLELLPFLHSLVTYLQNTGFLVAALAVPSY--RSADAG-SKWHGACKLPDN 560
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID + P + LI +TG+D+ NR LRLLA RL+ GL+ G+
Sbjct: 561 PIWRRIDLLLVPASEWGAALIYFTGDDIFNRSLRLLASKYDMRLNQRGLYEHCMRGKGRV 620
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ T +K E+ +F+ LG PW P ER L
Sbjct: 621 KLTEGTLIKGLDERGIFERLGVPWRPPEERIL 652
>gi|336379068|gb|EGO20224.1| hypothetical protein SERLADRAFT_452929 [Serpula lacrymans var.
lacrymans S7.9]
Length = 517
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 176/338 (52%), Gaps = 16/338 (4%)
Query: 199 NKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
N++I +L+ ++++ D R Y K I + P +I+S ++ + + G+G+
Sbjct: 182 NQDIIHKLQELMELHKSKASDDDHWRVIGYAKCIRALRNYPRRIKSLNEARAIRGVGEKT 241
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
I EI+ TG L ++E +E+ E + ++F ++G+G A Y G RTLDD+K
Sbjct: 242 ALKIMEIIKTGDLRRIE-YERTEDIEATTIFQGIYGVGRQIALMWYANGCRTLDDIKARK 300
Query: 316 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
++ Q +G++++DDI R+PR E +Q+ L+++ + P + I GS+RRGKA
Sbjct: 301 GGIKVSSVQDIGIQFYDDINARMPRAEAQQIFTLVKQQALALDPRLFIEIMGSFRRGKAD 360
Query: 373 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
CGD+D+++ P D K+H G L + L L EDL + S +Y GLC
Sbjct: 361 CGDIDILLTRPVDDGKTHSGLLLNLLSSLHAADILTEDLSLP----DDFSSLELSYRGLC 416
Query: 431 TYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 489
P R RID P + L+ +TG+D+ NR +RL A GY L+ GL+
Sbjct: 417 HLPEEGSRRRRIDILCVPWERRGAALLYFTGDDIFNRAIRLKANVLGYSLNQRGLYHGVV 476
Query: 490 GSGGKQGVRAR--TSLKFDTEKEVFDFLGFPWLEPHER 525
+ ++ T + +TE+E+F LG PW EPHER
Sbjct: 477 RDPRDRRIKVCEGTIIASETEEEIFKILGVPWQEPHER 514
>gi|336366399|gb|EGN94746.1| hypothetical protein SERLA73DRAFT_96118 [Serpula lacrymans var.
lacrymans S7.3]
Length = 685
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 180/348 (51%), Gaps = 26/348 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
N++I +L+ ++++ D R Y K I + P +I+S ++ + + G+G+
Sbjct: 340 NQDIIHKLQELMELHKSKASDDDHWRVIGYAKCIRALRNYPRRIKSLNEARAIRGVGEKT 399
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ---KLYEKGHRTLDDLK 312
I EI+ TG L ++E +E+ E + ++F ++G+G + Q Y G RTLDD+K
Sbjct: 400 ALKIMEIIKTGDLRRIE-YERTEDIEATTIFQGIYGVGMSCRQIALMWYANGCRTLDDIK 458
Query: 313 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
++ Q +G++++DDI R+PR E +Q+ L+++ + P + I GS+RRG
Sbjct: 459 ARKGGIKVSSVQDIGIQFYDDINARMPRAEAQQIFTLVKQQALALDPRLFIEIMGSFRRG 518
Query: 370 KASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMK-------FLREDLIFSTHSEEGTD 420
KA CGD+D+++ P D K+H G L+ + + L + L EDL +
Sbjct: 519 KADCGDIDILLTRPVDDGKTHSGKLNDFTRLLLNLLSSLHAADILTEDLSLP----DDFS 574
Query: 421 SGVDTYFGLCTYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
S +Y GLC P R RID P + L+ +TG+D+ NR +RL A GY L
Sbjct: 575 SLELSYRGLCHLPEEGSRRRRIDILCVPWERRGAALLYFTGDDIFNRAIRLKANVLGYSL 634
Query: 480 DDTGLFPATYGSGGKQGVRAR--TSLKFDTEKEVFDFLGFPWLEPHER 525
+ GL+ + ++ T + +TE+E+F LG PW EPHER
Sbjct: 635 NQRGLYHGVVRDPRDRRIKVCEGTIIASETEEEIFKILGVPWQEPHER 682
>gi|20067683|emb|CAD29083.1| chimeric DNA-directed DNA polymerase bf4-8 [synthetic construct]
gi|20067685|emb|CAD29084.1| chimeric DNA-directed DNA polymerase bf4-10 [synthetic construct]
Length = 322
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 184/338 (54%), Gaps = 36/338 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASC 373
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKML 190
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
D+D++I+ P++K K L +++ + G + G+C P
Sbjct: 191 NDVDLLIIVPEKKLLKHVLPRFIT-------------------DTLSKGETKFMGVCQLP 231
Query: 434 G----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
E H RID ++ P + + + +TG ++ +R+ A KG+ +++ + P
Sbjct: 232 SENDENEYPHRRIDIRLIPAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL- 288
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 289 ----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 321
>gi|298712875|emb|CBJ33392.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 782
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/489 (26%), Positives = 223/489 (45%), Gaps = 45/489 (9%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ---------------GNG 118
V+ +W+ + LR E V+ + YR+ P A ++ Q
Sbjct: 149 VVSSEWMSECLRRSEVVTAEAYRL-TPPLHHCAAPATVAPKQQQRSSTATTETNAAAEGC 207
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA- 177
++S+ ++ +K+I +S + + +A +P+ ++ L N A
Sbjct: 208 SSSASPAATGKKRILTSGGHQTTGGLVATRNQRGDAARGSPSGRGAAARLMNLEGEVGAR 267
Query: 178 SPDFSSHHITD--PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFS---YYKAIPVI 232
P+ ++ PS + P NK ++ L + G D F+ + A +
Sbjct: 268 KPNVDMRRVSQGQPSSFWGPQSPNKEAADMLDGLAELCATRGGDGSVFNERGFKSAAAAL 327
Query: 233 EKLPFKIESADQVKGLP--------GIGKSMQDHIQEIVTTGK---LSKLEHFEKDEKVR 281
L +I +Q+K L G+G + + GK + + +
Sbjct: 328 RMLGTQITDIEQLKDLRKNDPERVRGVGDGAMKELTAFLAEGKGKSRAPVSGADPPAPEA 387
Query: 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHE 339
+ LF EV +G A++LY+KG R+++DL+ D LT R+ L +DIK R+PR E
Sbjct: 388 CLKLFQEVGWVGAVKARQLYDKGMRSIEDLRTSGRDLLTEQMRVCLNRHEDIKQRMPRSE 447
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
++E + K + + P VI GSYRRGK++CGD+DV+I P+ + + +K+L
Sbjct: 448 AAEIEAAVTKVAQSICPGVICQACGSYRRGKSNCGDVDVLIRPPEGQEDSPMFLELIKEL 507
Query: 400 KEMKFLREDLIFSTHSEEG--TDSGVDTYFGLCTYPGR-ELRHRIDFKVYPRDIYAFGLI 456
E F+ + L EG T T+ G+C PG ++ R+D K+YP ++AF ++
Sbjct: 508 TETGFITDRLAMP----EGPYTPGKPQTFMGVCKLPGEGQIHRRLDVKLYPTSMFAFAVL 563
Query: 457 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 516
+TG+ N +R A+SKG +L+D GLF SG + + L+ E++VF LG
Sbjct: 564 YFTGSGDFNMNMRCFAKSKGLKLNDKGLFKVDPFSGEEVPNSGYSCLR---EEDVFSALG 620
Query: 517 FPWLEPHER 525
W+EP +R
Sbjct: 621 MDWIEPKDR 629
>gi|145524878|ref|XP_001448261.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415805|emb|CAK80864.1| unnamed protein product [Paramecium tetraurelia]
Length = 608
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 9/302 (2%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N I E KL+ IY + R +Y KAI I+ L F I S++ VK +P IG+ ++
Sbjct: 289 FNNQIIEELEKLLKIYTNEKDKGRCIAYRKAIGFIKSLAFPIRSSEDVKEMPTIGEKIKK 348
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 316
I EI+ TG L K++ E +K I+ VWGIGP TA Y KG +TL+DL+ N+
Sbjct: 349 KIVEIIQTGSLLKVQKLEGQDKNIAITQLTRVWGIGPTTAATFYFKGIKTLNDLRQNQHM 408
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--LPEVI-ILCGGSYRRGKASC 373
L +Q++ L+ ++++ RIPR E + ++++ +++ +P + GSYRR K SC
Sbjct: 409 LNKNQQVCLQLVEELEQRIPRDEATIIYEIVKRELDDLSGVPGLYKATACGSYRREKESC 468
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
GD+D++I D K +GFL +++L E K L L E +S Y G+
Sbjct: 469 GDMDILITRCDGKIVEGFLMNLIQRL-EGKLLTHHLTLPKKGEHDNES----YMGIGRIS 523
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
+ + RID K+YP++ Y ++ +TG+D NR +RL A+ G+ L D GL+P G+
Sbjct: 524 NQGIHRRIDLKLYPKEQYGCAVLYFTGSDQYNRSMRLWAQKIGFSLSDHGLYPTQRGTHN 583
Query: 494 KQ 495
K+
Sbjct: 584 KK 585
>gi|296815906|ref|XP_002848290.1| DNA polymerase lambda [Arthroderma otae CBS 113480]
gi|238841315|gb|EEQ30977.1| DNA polymerase lambda [Arthroderma otae CBS 113480]
Length = 659
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 165/330 (50%), Gaps = 9/330 (2%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E+ +++N Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 334 NSRTIEVLQQMLNYYERTADQWRCLAYRRAISALRREKDKVVTKSQALKIRGIGERLAVK 393
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV T +L +LE + +S F +++G+G A K +G+++LD+LK LT
Sbjct: 394 IEEIVWTNRLRRLEQANMEPNDALLSQFLKIYGVGYQQASKWIAQGYKSLDELKGGAHLT 453
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+Q++G++ +DD + RIPR EVE ++++ V ++ GGSYRRG A GD+D+
Sbjct: 454 TNQKIGIERYDDFQKRIPREEVEAHGAIVRETVLAVDSSYTVIIGGSYRRGAADSGDIDL 513
Query: 379 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
++ ++ + + V +L + FL+ L S+ + + G PG
Sbjct: 514 ILTKEGVSLQEINSQITTTVVPQLFKRGFLKASLAVSSRMDGS------KWHGASALPGN 567
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID P D LI +TGND+ NR LRLLA KG L+ GLF G+
Sbjct: 568 PVWRRIDLLFVPGDELGAALIYFTGNDIFNRSLRLLAGKKGMCLNQRGLFCDVIRGPGRV 627
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ A L+ EK +F+ L PW P R
Sbjct: 628 KLNAGHLLESRDEKRIFELLAVPWRPPEHR 657
>gi|20067713|emb|CAD29142.1| chimeric DNA-directed DNA polymerase bf2-7 [synthetic construct]
Length = 329
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 184/342 (53%), Gaps = 37/342 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 369
L H QR+GLKYF+D + RI + + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRILIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 190
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ D+D++I+ P++K L K+V L I T S+ G + G+
Sbjct: 191 EKMLNDVDLLIIVPEKK-----LLKHV--------LPNRFITDTRSK-----GETKFMGV 232
Query: 430 CTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
C P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ +
Sbjct: 233 CQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTI 292
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 293 RPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 328
>gi|298712876|emb|CBJ33393.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 428
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 169/337 (50%), Gaps = 15/337 (4%)
Query: 201 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP--------GIG 252
N+ E KL + G + + A V+ +L +I + Q+K L G+G
Sbjct: 40 NMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGVQITNIQQLKDLRKHEPQRVRGLG 99
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
S+ + G++ +L+ E D K++ + + EV +G AQ+LY+KG R+++DL+
Sbjct: 100 DSVMKELSTFYEEGRMHRLDGLEADPKLKCLKILQEVGWVGAVKAQQLYDKGVRSIEDLR 159
Query: 313 NEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 370
+ L+ ++ L +DI R+PR E ++E ++ K + + P VI GSYRRGK
Sbjct: 160 TKGLHLLSEQAQICLSRHEDIMQRMPRSEAAEIEAVVTKVAQSICPGVICQACGSYRRGK 219
Query: 371 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
+ CGD+DV+I P+ + +K+L E F+ + L + S ++ G+C
Sbjct: 220 SHCGDVDVLIRPPEGQEDSPMFDDLIKRLVETGFITDKLTLAGGPHRPGKS--QSFMGIC 277
Query: 431 TYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 489
PG L R+D K YP ++AF ++ +TG+ NR +R A+ KG +L D GL
Sbjct: 278 KLPGTGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNT 337
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+G + V S E++VF LG W EP +R+
Sbjct: 338 VNG--EEVHRFPSYSCLREEDVFTALGLEWREPKDRD 372
>gi|242014662|ref|XP_002428004.1| DNA polymerase beta, putative [Pediculus humanus corporis]
gi|212512523|gb|EEB15266.1| DNA polymerase beta, putative [Pediculus humanus corporis]
Length = 440
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 14/300 (4%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK + E KL N+Y + R +SY +AI I +I++ + +PGIG+ +
Sbjct: 138 NKIVIEELEKLENVYDVRNDTSRCYSYKRAISAISLYDKEIKTYQEACSIPGIGQKIASE 197
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I E++ +GK++KLE+ DEK + + +F VWG GP TA+ Y +G R L DL+ LT
Sbjct: 198 IMEVLESGKINKLENLLDDEKTKILKMFCNVWGAGPHTAEMWYSQGMRNLKDLR-RGKLT 256
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA-----GEEVLPEVIILCGGSYRRGKASC 373
Q +GLK + D+ +IPR EV ++ ++++K G+E V ++ GSYRRGK +C
Sbjct: 257 RRQEIGLKLYRDLSEKIPRQEVIKIFQIIEKCVTEMNGDESSLGVELV--GSYRRGKENC 314
Query: 374 GDLDVVIMH----PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
GD+DV+I++ D K L K LK FL +DL+ S + TD Y+G+
Sbjct: 315 GDVDVMIVNHDDDDDDKRPGEILKKLWNLLKIQGFLTDDLVNFIQS-DNTDKENRKYYGI 373
Query: 430 CTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
G E +H R+D V YA GL +TG+ + NR +++LA K L + GL+ T
Sbjct: 374 FKLKGDEEKHRRLDIFVVSGREYASGLFHYTGSAMFNRTVKILARKKNMILTERGLYAGT 433
>gi|302414018|ref|XP_003004841.1| DNA polymerase lambda [Verticillium albo-atrum VaMs.102]
gi|261355910|gb|EEY18338.1| DNA polymerase lambda [Verticillium albo-atrum VaMs.102]
Length = 770
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 149/298 (50%), Gaps = 35/298 (11%)
Query: 260 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH 319
+EIVTT +L +LEH E+D T+ F ++G+G A A + +GHRTLDDL+ L+
Sbjct: 474 EEIVTTDRLRRLEHAERDPADETLQRFVRIYGVGNAQASRWIAQGHRTLDDLRARAVLSA 533
Query: 320 SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 379
+QR+G+ ++DD+ TRIPR EVE + +++ A + P V ++ GGSYRRG AS GD+D++
Sbjct: 534 NQRIGIDHYDDLNTRIPRREVEALAAVVRSAAAALDPSVELIVGGSYRRGAASSGDIDLI 593
Query: 380 IMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG-- 434
+ S + FL++ + L+ FL L S + G G + G C P
Sbjct: 594 VTREGTTSARELLPFLTRLTRTLEARGFLVAALATSRDDDAG---GGTKWHGCCVLPEPE 650
Query: 435 ---------------------------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
R + RIDF V P L+ +TGND+ NR
Sbjct: 651 AARLHLGEGVGSERGSDPGAPSPATPYRPVWRRIDFLVVPAAELGAALLYFTGNDIFNRS 710
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+RLLA KG RL+ GL+ + V L+ E+ +F L W EPHER
Sbjct: 711 MRLLAARKGMRLNQRGLYRDVLRGPDRAKVTDGALLEGRDERRIFALLNVTWREPHER 768
>gi|407926589|gb|EKG19556.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 749
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 174/337 (51%), Gaps = 14/337 (4%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI ++ N Y ++ RS +Y KA+ ++K +I + DQ LP +G +
Sbjct: 415 NARTIEILTEMGNYYEQTKDEWRSRAYRKAVSTLQKQERRIITKDQALLLPFVGDRLAVK 474
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
I+EIV T +L +LE+ + + F +++G+G + A+K G RTL DL+ + L
Sbjct: 475 IEEIVWTNRLRRLENARMEPGDEALQNFLKIYGVGLSKARKWVMAGLRTLQDLEEYKIPL 534
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T +Q++G+ +++D TRIPR EV + +++ A + + P+ GSYRRG + GD+D
Sbjct: 535 TPAQQVGMAHYEDFNTRIPREEVSKHADVVRDALQAIDPKFTATVSGSYRRGAQTSGDID 594
Query: 378 VVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT-YFGLCTYP 433
++I P + + V KL FL+ + ++H+ G DSG T + G P
Sbjct: 595 ILISCPGVDLARLQVVVFDELVPKLTATGFLK--VALASHT--GGDSGSGTKWHGASALP 650
Query: 434 -----GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 488
G+E+ RID + P LI +TGND+ NR +RLLA KG RL+ GLF
Sbjct: 651 VLDGQGKEVWRRIDLLLVPDSQLGAALIYFTGNDIFNRSIRLLASRKGMRLNQRGLFRDV 710
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ V ++ E+ +F+ LG PW P R
Sbjct: 711 MRDRRREKVTDGELVEGRDERRIFEILGVPWRPPEHR 747
>gi|20067701|emb|CAD29092.1| chimeric DNA-directed DNA polymerase bf4-19 [synthetic construct]
Length = 329
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 185/343 (53%), Gaps = 39/343 (11%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKAS 372
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKM 190
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+D++I+ P++K K L +F+ + L G + G+C
Sbjct: 191 LNDVDLLIIVPEKKLLKHVLPNI------RRFITDTL----------SKGETKFMGVCQL 234
Query: 433 PG----RELRH-RIDFKVYPRDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
P E H RID ++ P+D YA + + +TG R+R + G+ +++
Sbjct: 235 PSENDENEYPHRRIDIRLIPKDQYAEEKPYAIFHFTGPVSYLIRIR---AALGFTINEYT 291
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 292 IRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 328
>gi|392578789|gb|EIW71916.1| hypothetical protein TREMEDRAFT_26921 [Tremella mesenterica DSM
1558]
Length = 785
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 162/293 (55%), Gaps = 14/293 (4%)
Query: 239 IESADQVKGL-PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
I S Q + L GIG+ + D I E +T K E++E EK +TIS+F +++G+G + A
Sbjct: 499 ITSGAQARSLLIGIGQGIADRIDEFLTGSK--GREYYENTEKAKTISMFKDIYGVGKSFA 556
Query: 298 QKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
+LY +G RT++DL+ E L+ Q++G++ + D+ +RIPR E +Q+ L++ + ++ P
Sbjct: 557 NELYRRGARTIEDLREKEYGLSKGQKIGVELYSDLISRIPRKECKQLYDLIRSSALDIDP 616
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDR--KSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V + GSYRRG GD+D++I D K+HKG + V L++ + ++
Sbjct: 617 MVWVEIMGSYRRGGVDSGDVDILITRDDSDGKTHKGLIKSLVNDLRKKGVITHEM----- 671
Query: 415 SEEGTDSGVDT-YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
S S ++T + G+ PG + R RID P D + LI +TGN++ NR LRL A
Sbjct: 672 SAPSDWSALETKWMGVGRVPGGKYR-RIDILCIPFDQWGAALIYFTGNEIFNRSLRLYAR 730
Query: 474 SKGYRLDDTGLFPATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG+ L+ GL+ G G + + TE+++F LG W PH+R
Sbjct: 731 KKGFSLNQRGLYTGVMRGPDGNKITEGEEIVVSKTEEDIFKILGIRWRHPHQR 783
>gi|440792209|gb|ELR13437.1| DNA polymerase beta, putative [Acanthamoeba castellanii str. Neff]
Length = 348
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 180/381 (47%), Gaps = 78/381 (20%)
Query: 185 HITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQ 244
H T L + N+ +T I +L I ++ G+ R+ +Y KA+ + P I S +
Sbjct: 8 HQTSEVTLEKHDNYNQKLTAILAELGQIEKSKGQMHRARAYEKAVRALRNHPTAITSGTE 67
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 304
+ L GIGK + I EI+ TGKL KL+ +D K + ++LF ++
Sbjct: 68 AQKLDGIGKKIGLKIDEILATGKLKKLDTLNEDPKTKALNLFQQL--------------- 112
Query: 305 HRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 364
+ + TH QR+GLK+F + RIPR E+EQ+E+++++ EV E+I G
Sbjct: 113 ---------KHTFTHHQRIGLKHFHEFNERIPRAEMEQLEKIIKETLSEVDEELIGTTCG 163
Query: 365 SYRRGKASCGDLDVVIMHP------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
SYRRG S GD+DV++ HP +K +LS+ V+ LK + +D+
Sbjct: 164 SYRRGAESSGDIDVLLTHPKYTVATKKKPEAQYLSRVVEALKRKGLITDDI--------- 214
Query: 419 TDSGVDTYFGLCTYPG--------------------------------RELRHRIDFKVY 446
G Y G+C P + L RID +V
Sbjct: 215 -SQGSSKYMGVCKLPDDEDEAKEKKEKKKQDSEGEEEEEEVEVEAKKKKRLHRRIDLRVI 273
Query: 447 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 506
P + Y GL+ +TG+D N+++R +A +G+ L++ + P GS G +G ++
Sbjct: 274 PYENYYCGLLYFTGSDFFNQQMRKIALDRGFTLNEYDVCPV--GSTGVKG----DPIEVH 327
Query: 507 TEKEVFDFLGFPWLEPHERNL 527
+E+++F+ LG + P +RNL
Sbjct: 328 SEEDIFELLGMTYKSPEQRNL 348
>gi|20067679|emb|CAD29081.1| chimeric DNA-directed DNA polymerase bf4-4 [synthetic construct]
Length = 324
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 185/339 (54%), Gaps = 36/339 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKAS 372
L H QR+GLKYF+D++ RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDVEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKM 190
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+D++I+ P++K K L +F+ + L G + G+C
Sbjct: 191 LNDVDLLIIVPEKKLLKHVLPNI------RRFITDTL----------SKGETKFMGVCQL 234
Query: 433 PG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
P E H RID ++ YA + +TG ++ +R+ A KG+ +++ + P
Sbjct: 235 PSENDENEYPHRRIDIRLAEEKPYA--IFHFTGP--VSYLIRIRAALKGFTINEYTIRPL 290
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 291 -----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 323
>gi|20067707|emb|CAD29095.1| chimeric DNA-directed DNA polymerase bf2-2 [synthetic construct]
Length = 327
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 184/342 (53%), Gaps = 39/342 (11%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 369
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ D+D++I+ P++K L K+V L I T S+ G + G+
Sbjct: 189 EKMLNDVDLLIIVPEKK-----LLKHV--------LPNRFITDTRSK-----GETKFMGV 230
Query: 430 CTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
C P E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ +
Sbjct: 231 CQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTI 290
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 291 RPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 326
>gi|345307659|ref|XP_001511409.2| PREDICTED: hypothetical protein LOC100080532 [Ornithorhynchus
anatinus]
Length = 1170
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 125/203 (61%), Gaps = 2/203 (0%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +ITE L Y G+ R+ SY KAI ++ + S + +PGIGK M +
Sbjct: 349 NPHITEKLEVLARAYTVQGDKWRALSYAKAINALKSFHKPVSSLQEACRIPGIGKRMAEK 408
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EIV +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ +LT
Sbjct: 409 IMEIVESGHLRKLDHL--SESVPVLELFSNIWGAGAKTAQMWYQQGFRSLEDVRSKATLT 466
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q +GLK+++D R+PR E ++E ++ A + + P ++ + GSYRRGKA+CGD+DV
Sbjct: 467 SQQVVGLKHYEDFLDRMPREEAAEIEETVRAAAQVLNPGLLAVSCGSYRRGKATCGDVDV 526
Query: 379 VIMHPDRKSHKGFLSKYVKKLKE 401
++ HPD +SH+G S+ + L++
Sbjct: 527 LVTHPDGRSHQGVFSRLLDGLRQ 549
>gi|20067699|emb|CAD29091.1| chimeric DNA-directed DNA polymerase bf4-18 [synthetic construct]
Length = 338
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 182/348 (52%), Gaps = 40/348 (11%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVII-----LCGGSYRR 368
L H QR+GLKYF+D + RIPR + + L + E ++I + GS+RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAGSFRR 190
Query: 369 GKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
G S GD+DV++ HP+ F S+ K+ K + + E L G+
Sbjct: 191 GAESSGDMDVLLTHPN------FTSESSKQPKLLHRVVEQLRI---------KGLSFSVK 235
Query: 429 LCTYPGRELRHRIDFKVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+C L + K Y P+D Y G++ +TG+D+ N+ +R A KG+
Sbjct: 236 VCGERKCVLFIEWEKKTYQLDLFTALAEPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFT 295
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+++ + P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 296 INEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 337
>gi|20067681|emb|CAD29082.1| chimeric DNA-directed DNA polymerase bf4-7 [synthetic construct]
Length = 325
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 184/337 (54%), Gaps = 31/337 (9%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYI--ATGSLRREEKMLND 188
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+D++I+ P++K K L K +F+ + L G + G+C P
Sbjct: 189 VDLLIIVPEKKLLKHVLPNIRIK---GRFITDTL----------SKGETKFMGVCQLPSE 235
Query: 435 ---RELRH-RIDFKVYPR-DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 489
E H RID ++ P+ + + + +TG ++ +R+ A KG+ +++ + P
Sbjct: 236 NDENEYPHRRIDIRLIPKAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-- 291
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 292 ---GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 324
>gi|311977701|ref|YP_003986821.1| probable DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|81990391|sp|Q7T6Y4.2|DPOLX_MIMIV RecName: Full=Probable DNA polymerase family X
gi|55664862|gb|AAQ09576.2| DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|308204336|gb|ADO18137.1| probable DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|339061254|gb|AEJ34558.1| DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|351737472|gb|AEQ60507.1| DNA polymerase family X [Acanthamoeba castellanii mamavirus]
gi|398257158|gb|EJN40766.1| DNA polymerase family X [Acanthamoeba polyphaga lentillevirus]
Length = 354
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 174/324 (53%), Gaps = 37/324 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHF--EKDEKV 280
S KA+ +++ L F+I A+ VKG+PGIG I+EI+ TGKL L + F EK +++
Sbjct: 41 SIKKALSILKNLDFEITDANDVKGIPGIGAGTIKRIKEILETGKLHDLKDKFSPEKQKQI 100
Query: 281 RTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTR 334
I V GIG +TA+KL + G R++DDLK + ++ S LGLKY+ ++
Sbjct: 101 EGIQELENVIGIGSSTAKKLISQYGIRSVDDLKKAIETGKVKVSTSIMLGLKYYGIVQRD 160
Query: 335 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL-- 392
IPR E+ +E+LL K ++ P++ I+ GSYRRGK + GD+DV++ HP K+ K L
Sbjct: 161 IPRKEITAIEKLLSKEAHKIDPDLEIIICGSYRRGKKTSGDIDVLMYHPKMKTSKEMLHP 220
Query: 393 ---------SKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 443
+ Y+ +L E FL +D+ F+ + + Y G C Y +R RID
Sbjct: 221 EKFDLEPYFNLYIDRLTEKGFLIDDITFNPNKK---------YMGFCKYKLNPVR-RIDI 270
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
+ P + A ++ +TG LN ++R A+ + L++ GLF K G A+ L
Sbjct: 271 RFIPYNSLAPAMLYFTGPMELNTKMRSAAKKRKMILNEYGLFKT-----DKNG--AQIPL 323
Query: 504 KFDTEKEVFDFLGFPWLEPHERNL 527
+E ++F LG +L P +R L
Sbjct: 324 DTKSEADIFHALGMDYLTPQQREL 347
>gi|10441984|gb|AAG17269.1|AF218027_1 unknown [Homo sapiens]
gi|119570150|gb|EAW49765.1| polymerase (DNA directed), lambda, isoform CRA_i [Homo sapiens]
Length = 248
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 141/251 (56%), Gaps = 7/251 (2%)
Query: 278 EKVRTISLFGEVWG-IGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
E + SL W I A+ + +G R+L+D++++ SLT Q +GLK++ D R+P
Sbjct: 2 EALCVCSLMPLHWSWILTASHLAAFFQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMP 61
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
R E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 62 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLL 121
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
L++ FL +DL+ + E G Y G+C PG RH R+D V P +A L
Sbjct: 122 DSLRQEGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACAL 176
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+ +TG+ NR +R LA++KG L + L A + V L TEK+VF L
Sbjct: 177 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLL 236
Query: 516 GFPWLEPHERN 526
G P+ EP ER+
Sbjct: 237 GLPYREPAERD 247
>gi|339242947|ref|XP_003377399.1| DNA polymerase lambda [Trichinella spiralis]
gi|316973801|gb|EFV57356.1| DNA polymerase lambda [Trichinella spiralis]
Length = 606
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 153/285 (53%), Gaps = 10/285 (3%)
Query: 213 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 272
Y+++ E R+ +Y KAI I++ I S + + LPGIGK + I E+ G++ K+
Sbjct: 132 YKSMNESWRALAYDKAISSIKQCKEPITSKEMLSELPGIGKKIAAKIWELHEEGEIEKVS 191
Query: 273 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 332
F +EK++ + LF VWG+GP TA+K Y +G RT++D++ +LT + +G KY ++I
Sbjct: 192 EFASNEKIQVLKLFNTVWGVGPRTAEKWYLQGLRTIEDVQRNVALTGQEHIGFKYREEIL 251
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 392
+IPR EVE++ +++ A ++ + GSYRRG+ CGD+D++I HPD KS+ +
Sbjct: 252 LKIPRPEVEEIAKMVIDAAYKINNNFVCDICGSYRRGEEECGDVDILITHPDGKSYLNIV 311
Query: 393 SKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY-PGREL--RHRIDFKVYPRD 449
+ V LK+ FL T S + Y G+C G L RID P
Sbjct: 312 YQLVTVLKDSGFL-------TDSLTDINWNSSKYMGVCQLKSGSNLVFHRRIDIIAVPPA 364
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
YA L+ TG+ R + A+S +L+ GL+ + G+
Sbjct: 365 EYATALLYLTGSAEFVRGVYGKAKSMQMKLNQHGLWINVNRANGR 409
>gi|145350970|ref|XP_001419864.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580096|gb|ABO98157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 340
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 181/350 (51%), Gaps = 28/350 (8%)
Query: 195 PPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
P + N + ++ ++ I + AL E ++ Y A + L F+++S DQV +P + K
Sbjct: 2 PLECNSKVADLLSEMAKINQDALREVYKAKQYAAAASALRSLNFEVQSIDQVDVIPMLKK 61
Query: 254 ---SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 310
++ ++QEI+TTGKL+ L+ + V++ + G+GP TA+KL++KG+++L D
Sbjct: 62 RDGKIRKYVQEILTTGKLTALQSLRQRPDVKSCVELSGIHGVGPVTARKLFDKGYKSLAD 121
Query: 311 LKN----EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP-EVIILCGGS 365
L+ D+LT +Q +GLKY+++ K RIPR EV + +++A + EV C GS
Sbjct: 122 LRAPGVPRDTLTPTQWIGLKYYEEFKQRIPREEVSHIATAVREAANTFMKDEVRCYCVGS 181
Query: 366 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT 425
+RRGKA GD+DV++ D L + L+ I + + G
Sbjct: 182 FRRGKADSGDVDVLVECRDVSLANDLLMHILNDLRAGSPSPRSGILTDDLQVGDVQ---- 237
Query: 426 YFGLCTY--PGRE------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
Y G+ P R + RID KVY D + L+ +TG+D NR +RL A+ KGY
Sbjct: 238 YMGVAALQQPLRADDQAPPVHRRIDIKVYETDAFPTALLYFTGSDKFNRSMRLWAKRKGY 297
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
L D GLF + + VR R EK++FD L ++ P +RN+
Sbjct: 298 ALQDKGLFRDRSEAAASR-VRVR------DEKDIFDALQLDYVAPKDRNV 340
>gi|15825881|pdb|1JN3|A Chain A, Fidelity Properties And Structure Of M282l Mutator Mutant
Of Dna Polymerase: Subtle Structural Changes Influence
The Mechanism Of Nucleotide Discrimination
Length = 251
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 154/266 (57%), Gaps = 26/266 (9%)
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 329
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+
Sbjct: 1 LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFE 60
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 61 DFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSES 120
Query: 390 G----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-R 440
L + V++L++++F+ + L G + G+C P E H R
Sbjct: 121 SKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYPHRR 170
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
ID ++ P+D Y G++ +TG+D+ N+ LR A KG+ +++ + P G GV A
Sbjct: 171 IDIRLIPKDQYYCGVLYFTGSDIFNKNLRAHALEKGFTINEYTIRPL-----GVTGV-AG 224
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHERN 526
L D+E+++FD++ + + EP +R+
Sbjct: 225 EPLPVDSEQDIFDYIQWRYREPKDRS 250
>gi|403416241|emb|CCM02941.1| predicted protein [Fibroporia radiculosa]
Length = 659
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 199/452 (44%), Gaps = 103/452 (22%)
Query: 166 ESLTNTLSTASASP----DFSSHHITDPSLLYNP-PDLNKNITEI--------------- 205
+S T +ST + SP S+ HI P+ L P P + NI ++
Sbjct: 217 DSGTKLVSTLTGSPLSEVKVSTRHIEIPAHLLPPSPPIPTNIAKLNYASRYACQRASPLE 276
Query: 206 -----FGKLINIYR---AL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
K +++ R AL GE+R + SY +AI +++ P KI S QV+ LP IG +
Sbjct: 277 CPNPGLVKELDVLRRSRALEGEERSALSYARAISIVKAYPRKIRSLQQVEKLPFIGAKIG 336
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN--- 313
++E V +GK+++ + E+ + +SLF ++GIGP TA+KLY G R+LD+L+
Sbjct: 337 GMVEEYVLSGKITEAQSILASERFQALSLFATIYGIGPTTARKLYALGLRSLDNLEVYYG 396
Query: 314 --------------EDSLTHSQ---------------------------------RLGLK 326
E T Q R+ L+
Sbjct: 397 VERDQGPSEEIIEVEKQTTSEQSYRNDKDKGRRRGVGGWGGEKGEGDEGLGESWVRIALE 456
Query: 327 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 386
+D+ +IPR EVE+M R++ +E+ P + G YRRGK D+D+V HPD
Sbjct: 457 LREDLSIKIPRAEVEEMNRVVMAELDELEPGCVSTIAGGYRRGKPESNDVDIVFTHPDGT 516
Query: 387 SHKGFLSKYVKKLKEMKFLREDLIFS---------THSEEGTDSGVDTYFGLCTYPGREL 437
KG + V++L E K + + S T+ + + + + T + L
Sbjct: 517 RIKGLCKRLVRRLHERKMVTHVMHLSGFHGHNPLRTNHWDSLEKSLTVFILPSTSHSKGL 576
Query: 438 RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQG 496
R R+D P +IY +I W+G+ + R LR A+ K + D +G+
Sbjct: 577 RRRLDLIFAPPEIYWTAVIGWSGSIMFERDLRQWAKDKVAMKFDSSGI------------ 624
Query: 497 VRARTSLKF--DTEKEVFDFLGFPWLEPHERN 526
R S +F TEKE F+ LG W++P RN
Sbjct: 625 TRRYDSKQFFPKTEKEAFNLLGLEWIDPTLRN 656
>gi|20067693|emb|CAD29088.1| chimeric DNA-directed DNA polymerase bf4-15 [synthetic construct]
Length = 319
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 181/336 (53%), Gaps = 35/336 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYI--ATGSLRREEKMLND 188
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+D++I+ P++K K L +F+ + L G + G+C P
Sbjct: 189 VDLLIIVPEKKLLKHVLPNI------RRFITDTL----------SKGETKFMGVCQLPSE 232
Query: 435 ---RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
E H RID ++ YA + +TG ++ +R+ A KG+ +++ + P
Sbjct: 233 NDENEYPHRRIDIRLAEEKPYA--IFHFTGP--VSYLIRIRAALKGFTINEYTIRPL--- 285
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 286 --GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 318
>gi|157833739|pdb|1RPL|A Chain A, 2.3 Angstroms Crystal Structure Of The Catalytic Domain Of
Dna Polymerase Beta
Length = 251
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 154/266 (57%), Gaps = 26/266 (9%)
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 329
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+
Sbjct: 1 LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFE 60
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 61 DFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSES 120
Query: 390 G----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-R 440
L + V++L++++F+ + L G + G+C P E H R
Sbjct: 121 SKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYPHRR 170
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
ID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A
Sbjct: 171 IDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AG 224
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHERN 526
L D+E+++FD++ + + EP +R+
Sbjct: 225 EPLPVDSEQDIFDYIQWRYREPKDRS 250
>gi|67521542|ref|XP_658835.1| hypothetical protein AN1231.2 [Aspergillus nidulans FGSC A4]
gi|40746668|gb|EAA65824.1| hypothetical protein AN1231.2 [Aspergillus nidulans FGSC A4]
Length = 625
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 172/348 (49%), Gaps = 15/348 (4%)
Query: 144 AESKGDVETNALSEAPNSPMSSESLT---NTLSTASASPDFSSHHITDPSLLYNPPDLNK 200
A K ET+ S++P + S L+ N ++ S NP N
Sbjct: 262 AAEKSGYETSDESQSPPAKTKSRKLSDGQNGVARCWQQKFVCMQKHDSTSSAQNP---NA 318
Query: 201 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 260
E+ ++++ Y + R+ +Y KAI + K+ S + +PGIG+ + D I+
Sbjct: 319 RTIEVLQQMLDYYTRTADHWRTLAYRKAISALRSQSKKVLSRSEAIRIPGIGERLADKIE 378
Query: 261 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 320
EIV T +L +L++ + R + + V+G G A + +G+R+L+DL+ + SLT +
Sbjct: 379 EIVLTNRLRRLDNTSNTVEDRLLQTYLGVYGAGITVASRWIAQGYRSLEDLRTKASLTQA 438
Query: 321 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 380
QR+GL ++ D +IPR EV+ +++ P++ ++ GGSYRRG A+ GD+D++I
Sbjct: 439 QRIGLDHYFDFSQQIPRTEVQAHGNFVRRVVRMESPDMQVIIGGSYRRGAATSGDIDLII 498
Query: 381 MHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGREL 437
PD + L V KL + FL+ L +T EG+ + G P +L
Sbjct: 499 TRPDATIEEIRTLMLDNVVPKLFQQGFLQASLA-ATCRGEGSK-----WHGASKLPDGQL 552
Query: 438 RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
RID P LI +TGND+ NR +RLLA K RL+ GL+
Sbjct: 553 WRRIDLLFVPGAELGAALIYFTGNDIFNRSIRLLASKKLMRLNQRGLY 600
>gi|58865402|ref|NP_001011912.1| DNA polymerase mu [Rattus norvegicus]
gi|51859148|gb|AAH81868.1| Polymerase (DNA directed), mu [Rattus norvegicus]
gi|149047644|gb|EDM00314.1| rCG35832 [Rattus norvegicus]
Length = 495
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 169/352 (48%), Gaps = 34/352 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G++ R ++Y+A +++ LP+ + S Q+ GLP G+
Sbjct: 153 NTLLSEALETLAEAAGFEGKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
IQE++ G ++E E+ +T+ LF ++G+G TA + Y++G RTLD+L+ + L
Sbjct: 213 IQELLEHGTCEEVEQIRCSERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQPQRL 272
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL+Y+ D+ T + R E E +++L++ A E+LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQYYQDLSTPVSRAEAEALQQLVEAAMREILPGATVTLTGGFRRGKLQGHDVD 332
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEM------KFLREDLIFSTH--SEEGTDSGVDTYFGL 429
+I HP+ G L + ++ L+ ++ R L S H + T + F +
Sbjct: 333 FLITHPEEGQEVGLLPRVMRCLQSQGLVLYHQYHRSHLADSAHILRQRSTMDAFERSFCI 392
Query: 430 CTYPGRELRH--------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ES 474
P + R+D V P + F L+ WTG+ R LR + +
Sbjct: 393 LRLPQSQQAALEGPLHPCPTWKAVRVDLVVTPNSQFPFALLGWTGSQFFERELRRFSRQE 452
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG L+ GLF +T +E++VF FLG +L P +RN
Sbjct: 453 KGLCLNSHGLF----------DPERKTFFHATSEEDVFRFLGLKYLPPEQRN 494
>gi|20067689|emb|CAD29086.1| chimeric DNA-directed DNA polymerase bf4-12 [synthetic construct]
Length = 318
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 178/336 (52%), Gaps = 36/336 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSLRREEKMLND 190
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+D++I+ P++K K L +F+ + L G + G+C P
Sbjct: 191 VDLLIIVPEKKLLKHVLPN--------RFITDTL----------SKGETKFMGVCQLPSE 232
Query: 435 ---RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
E H RID ++ YA + +TG R+R + G+ +++ + P
Sbjct: 233 NDENEYPHRRIDIRLAEEKPYA--IFHFTGPVSYLIRIR---AALGFTINEYTIRPL--- 284
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 285 --GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 317
>gi|294953719|ref|XP_002787904.1| DNA polymerase mu, putative [Perkinsus marinus ATCC 50983]
gi|239902928|gb|EER19700.1| DNA polymerase mu, putative [Perkinsus marinus ATCC 50983]
Length = 420
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 189/386 (48%), Gaps = 61/386 (15%)
Query: 180 DFSSHHITD--PSLLYNPPDLNKNITEIFGKL-INIYRALG--EDRRSFSYYKAIPVIEK 234
D SS + D P+L D NK +++IF L N+ G ++ RS SY +A I+K
Sbjct: 51 DDSSRGVVDRKPTL-----DCNKKLSQIFRDLEANLRHNKGSSDEFRSRSYRRAADKIDK 105
Query: 235 LPFKIESADQVKGLP-----GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 289
L + +++ V+ GIG I+E V TG + K E E+ I V
Sbjct: 106 LGYPLDTDAAVEHFASECGSGIGAKTMQKIREFVNTGSVKKAEVIGTAERAIGIRELTSV 165
Query: 290 WGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
WG+G +TA+K Y G R++D L++ S L H+Q++GLKYF++ +IPR EVE++ +
Sbjct: 166 WGVGVSTAEKWYAMGIRSVDALRHSGSIEQLNHNQKIGLKYFEEFNCKIPRQEVEEISTV 225
Query: 347 LQKAGEEV-------LPEVIILCGGSYRRGKASCGDLDVVIMHPDRK----SHKGFLSKY 395
+ ++ L ++ GSYRRGKA CGD+D +I H R+ + LS
Sbjct: 226 VLAGVDQATRAKYGGLEHFNVVVCGSYRRGKAMCGDVDFLITHRSRQLTYTENAAILSSI 285
Query: 396 VKKLKE------------MKFLREDLIFSTHSEEGTDS--GVDTYFGLCTYPG------R 435
V L E L + HSEE + S G+D Y C Y G +
Sbjct: 286 VSCLSEEGVAPSFPQARLTDHLNQYRQHQEHSEESSTSCIGLDDYQQFCQYFGVFQLSPK 345
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGK 494
+ R+D KV+ Y + L+ +TG+ V NRR+R A++K G +++D G+F S G
Sbjct: 346 HIHRRVDIKVWSLREYPYALVHFTGSGVFNRRMRYYAKTKLGLKVNDHGIFR----SDG- 400
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWL 520
+ + TE++VFD L ++
Sbjct: 401 ------SCISCKTERDVFDCLNIKYM 420
>gi|302897331|ref|XP_003047544.1| hypothetical protein NECHADRAFT_50658 [Nectria haematococca mpVI
77-13-4]
gi|256728475|gb|EEU41831.1| hypothetical protein NECHADRAFT_50658 [Nectria haematococca mpVI
77-13-4]
Length = 587
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 221/478 (46%), Gaps = 32/478 (6%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
V++ WL+DS G + + Y + +G+ ++ + + SS R +
Sbjct: 113 VVKLAWLKDSFEQGTVLPFENYLLY---QGKKVSPKDATPTSATVQHSSTASILERARQD 169
Query: 134 SSTEDVEHF-QAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--SSHHITDPS 190
+ + + K T+A S + ++ + T PDF + + P+
Sbjct: 170 QQAQPASNSPRGRPKHRSHTSATSADHVPSLLHQTTSEHDITLPPVPDFLETPYSCQRPT 229
Query: 191 LLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 250
+ P N+ E ++ I + G++ +Y +I + P K+++ +V+ LPG
Sbjct: 230 PMKPP---NEAFVEALIEVRTIRKLQGDEVGVRAYSTSIATVSAYPHKLQNTHEVERLPG 286
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 310
G + + +E TG+L+++ + D V + LF +WG+G TA++ Y KG R L+D
Sbjct: 287 CGAKIAELWREWNETGELTEVRKADADPMVSVLRLFYNIWGVGDTTAREFYRKGWRDLND 346
Query: 311 LKN--EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
L + DSL+ SQ++G+K++D+ +IPR EVE + ++ K E+ ++ G YRR
Sbjct: 347 LVDFTWDSLSRSQQVGVKFYDEFLLKIPRDEVESIGAVILKHAREIDAGFEMIIAGGYRR 406
Query: 369 GKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------- 417
GK+ CGD+DV++ H D ++ ++ L++ +F+ +L+ S H+ E
Sbjct: 407 GKSQCGDIDVILSHRDENKTLRVVNTLIQSLEQARFITHNLVMSLHNSERGQRPVSWKGE 466
Query: 418 -GTDSGVDTY---FGLCTYPGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
+ SG DT + P +E R+D + P L+ W+G R LR
Sbjct: 467 GASGSGFDTLDKAMVVWQDPSQEDAPHRRVDIIISPWKTVGCALLGWSGGTTFQRDLRRY 526
Query: 472 AES-KGYRLDDTGLFPATYGSGG--KQGVRARTSLKFDT-EKEVFDFLGFPWLEPHER 525
+ KG + D +G+ + G ++G + +T E+ VF+ LG W P ER
Sbjct: 527 CKKVKGLKFDSSGVRRRSDGMWVDLEKGPAGDGAPDMETAERRVFEGLGLTWRPPEER 584
>gi|406604333|emb|CCH44175.1| DNA nucleotidylexotransferase [Wickerhamomyces ciferrii]
Length = 530
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 157/326 (48%), Gaps = 24/326 (7%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
GE ++ +Y AI + I A++ L GIG S+ I+EIV T LS L +
Sbjct: 174 GEHFKAKAYKNAINALNNTGDFISDANEALRLKGIGVSVAQKIEEIVKTNTLSSLNEIKS 233
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
D++ + LF + G+GP +A+K Y G RTL+D+ + LT +Q LGLKY+D+ RIP
Sbjct: 234 DKEHQVSKLFMGIHGVGPVSAKKWYNDGLRTLEDVSQKPDLTSNQTLGLKYYDEWLERIP 293
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP--DRKSHKGFLSK 394
R E + ++ P V GGSYRRG +CGD+D +I P D + K L K
Sbjct: 294 RDECTLHNEFMSDLVSQIDPLVQFTIGGSYRRGSPTCGDVDFIITKPNADNEEMKEILEK 353
Query: 395 YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR-------------HRI 441
+ K++++ +L+ L HS + + C P RI
Sbjct: 354 ILVKIEQVGYLKCSLQ-KKHSTK--------FLSGCALPPNYASRLPEYSEGKWGKCRRI 404
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 501
DF + P I +TGND NR +RL A G L+++GLF GK
Sbjct: 405 DFLMVPWKERGAAFIYFTGNDYFNRLIRLKAVKNGLVLNESGLFKRIKYVQGKNVEDKTM 464
Query: 502 SLKFDTEKEVFDFLGFPWLEPHERNL 527
++ +EK++F LGF ++ P +RN
Sbjct: 465 LIESFSEKKIFKLLGFKYVPPEQRNF 490
>gi|167527506|ref|XP_001748085.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773503|gb|EDQ87142.1| predicted protein [Monosiga brevicollis MX1]
Length = 369
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 169/350 (48%), Gaps = 30/350 (8%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
+ N I + +L + R + + + +Y KA I + S + L G+GK +
Sbjct: 29 NANAEICDFLNQLADYERNVSRNIHKYNAYRKAARSIAAHSLPLRSGKDAQRLDGVGKKI 88
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
+ I+E +TTG L KL+ + + I L V G GPA AQ +KG TL+ LK ED
Sbjct: 89 GEKIEEFLTTGGLKKLDKINANPEAAAIQLIASVVGFGPAAAQNYVQKGITTLEALKQED 148
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L+++Q++GLK+F D RIPR EVE + + + EV + GS+RRG A+ GD
Sbjct: 149 GLSNAQKIGLKHFADFNERIPRAEVEALRQAVFAELREVDDRLEGQVCGSFRRGAATSGD 208
Query: 376 LDVVIMHPDRKS-----------------HKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
+D+++ HPD KS L + + LK++ + + L G
Sbjct: 209 IDILLTHPDFKSTGDGEALGKTKKKLDPPFDKLLDRVISHLKKVGLVTDVLSLGESKFMG 268
Query: 419 TDSGVDTYF---GLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
+T F GL P R R RID +++P D Y L+ +TG+D N+ +R A
Sbjct: 269 VARLPETQFSEAGLA--PPRRFR-RIDMRLWPVDQYPLALLYFTGSDETNKTMRRKAIDL 325
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G+RL + L P + + + L +EK+VFD L +LEP +R
Sbjct: 326 GFRLSEYSLRPMS------EDDKPGRPLPVSSEKDVFDALDMTYLEPAQR 369
>gi|157830423|pdb|1BPB|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
gi|157832157|pdb|1NOM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (5 Millimolar)
gi|157834405|pdb|1ZQU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Artificial Mother Liquor
gi|157834406|pdb|1ZQV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cacl2 (150 Millimolar)
gi|157834407|pdb|1ZQW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cscl (150 Millimolar)
gi|157834408|pdb|1ZQX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Kcl (150 Millimolar)
gi|157834409|pdb|1ZQY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mgcl2 (50 Millimolar)
gi|157834410|pdb|1ZQZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (50 Millimolar)
gi|157834699|pdb|2BPC|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
Length = 248
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 152/261 (58%), Gaps = 26/261 (9%)
Query: 276 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTR 334
+D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + R
Sbjct: 3 QDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKR 62
Query: 335 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---- 390
IPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 63 IPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPK 122
Query: 391 FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDFKV 445
L + V++L++++F+ + L G + G+C P E H RID ++
Sbjct: 123 LLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYPHRRIDIRL 172
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 505
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L
Sbjct: 173 IPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPV 226
Query: 506 DTEKEVFDFLGFPWLEPHERN 526
D+E+++FD++ + + EP +R+
Sbjct: 227 DSEQDIFDYIQWRYREPKDRS 247
>gi|409042790|gb|EKM52273.1| hypothetical protein PHACADRAFT_30808 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1125
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 165/306 (53%), Gaps = 24/306 (7%)
Query: 199 NKNITEIFGKLINIY---RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
N++I +IF +L IY +A ++ R+ +Y K I + + P +IES +++ + G GK
Sbjct: 796 NQDIIDIFTQLKEIYEIRKAESDNFRADTYRKVIKSLREYPKRIESREELVQINGAGKKT 855
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 312
+D I EI+ TG+L +L+ FE ++ + LF ++G+G T+ K Y G RTLDD+ K
Sbjct: 856 KDKIMEIIKTGRLRRLQ-FEMTAELDVLRLFQGIYGVGSITSLKWYAAGCRTLDDIHQRK 914
Query: 313 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
L+ +Q LGLKY+DDI +RI R EV ++ + ++ + ++I+ GSYRRGKA
Sbjct: 915 GGIKLSDAQELGLKYYDDINSRISRQEVGEIFQRIKDIAHGIDKKLIVEIMGSYRRGKAD 974
Query: 373 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
CGD+D++I P D+K HKG + V L +M + D + + T+ Y GLC
Sbjct: 975 CGDIDILITRPTDDKKHHKGLAQRMV-NLCQMHGIIVDHLSIPSNWWSTEL---VYHGLC 1030
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL-----------NRRLRLLAESKGYRL 479
R+DF P + L+ +TG+D++ NR +R A Y L
Sbjct: 1031 RRDDDSPVRRLDFLAVPYEQRGAALLYFTGDDIVSVLLIQLHAQFNRSMRAKANKMDYSL 1090
Query: 480 DDTGLF 485
+ GL+
Sbjct: 1091 NQRGLY 1096
>gi|295321725|pdb|3K75|D Chain D, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
gi|295321726|pdb|3K75|E Chain E, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
Length = 252
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 151/260 (58%), Gaps = 26/260 (10%)
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRI 335
D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RI
Sbjct: 2 DDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRI 61
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----F 391
PR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 62 PREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKL 121
Query: 392 LSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDFKVY 446
L + V++L++++F+ + L G + G+C P E H RID ++
Sbjct: 122 LHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYPHRRIDIRLI 171
Query: 447 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 506
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D
Sbjct: 172 PKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVD 225
Query: 507 TEKEVFDFLGFPWLEPHERN 526
+E+++FD++ + + EP +R+
Sbjct: 226 SEQDIFDYIQWRYREPKDRS 245
>gi|183448136|pdb|2VAN|A Chain A, Nucleotidyl Transfer Mechanism Of Mismatched Dntp
Incorporation By Dna Polymerase B By Structural And
Kinetic Analyses
Length = 245
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 151/260 (58%), Gaps = 26/260 (10%)
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRI 335
D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RI
Sbjct: 1 DDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRI 60
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----F 391
PR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 61 PREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKL 120
Query: 392 LSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDFKVY 446
L + V++L++++F+ + L G + G+C P E H RID ++
Sbjct: 121 LHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYPHRRIDIRLQ 170
Query: 447 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 506
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D
Sbjct: 171 PKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVD 224
Query: 507 TEKEVFDFLGFPWLEPHERN 526
+E+++FD++ + + EP +R+
Sbjct: 225 SEQDIFDYIQWRYREPKDRS 244
>gi|354485251|ref|XP_003504797.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Cricetulus griseus]
gi|344252516|gb|EGW08620.1| DNA polymerase mu [Cricetulus griseus]
Length = 491
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G + R S+Y+A V++ LP + S Q++GLP G+ IQE++ G ++E
Sbjct: 168 GNEGRLLSFYRAASVLKSLPCPVTSLSQLQGLPHFGEHSSRVIQELLEHGACEEVERVRC 227
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRI 335
E+ +T+ LF +++G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T +
Sbjct: 228 SERHQTMKLFTQIFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPV 287
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
R + E +++L++ A + LP + G +RRGK+ D+D +I HP+ G L K
Sbjct: 288 GRADAEALQQLVEAAVRQTLPGATVTLTGGFRRGKSQGHDVDFLITHPEEGQEVGLLPKV 347
Query: 396 VKKLKEMKFL-----REDLIFSTH--SEEGTDSGVDTYFGLCTYP-------GRELRH-- 439
++ L+ + + STH + T + F + P G L
Sbjct: 348 MRHLQSQGLVLYHQHHRSHLDSTHLLRQNYTMDAFERSFCILCLPQPPHAALGGTLHPCP 407
Query: 440 -----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGG 493
R+D V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 408 TWKAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLF-------- 459
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+T +E+++F LG +L P +RN
Sbjct: 460 --DPEQKTFFHATSEEDIFRLLGLKYLPPEQRN 490
>gi|342320802|gb|EGU12741.1| DNA polymerase lambda [Rhodotorula glutinis ATCC 204091]
Length = 1020
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 165/318 (51%), Gaps = 25/318 (7%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R SY +A + P K+ DQ+ L GIG M + I EI+ TG +L F+ E+
Sbjct: 713 RQRSYKQAANKLRSCPTKVTRFDQLVKLRGIGDKMANKIIEILRTGTHRRLTTFQT-ERE 771
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL--GLKYFDDIKTRIPRH 338
+T+ LF ++G+G A A LY+KG R+++ ++ + + ++ L GLKY++D+ RIPR
Sbjct: 772 KTVKLFCGIYGVGQAKAADLYDKGARSVEMIRRDPARFGAELLHVGLKYYEDLLERIPRD 831
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYV 396
EV ++ ++ ++ P++ + C GSYRRG +CGD+D++I D K+H+G + K
Sbjct: 832 EVTELYGHAKRIAYKIDPKLQVWCMGSYRRGAETCGDIDLIITRDPSDGKTHEGAVQKLW 891
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLI 456
K L K +R +L D+ V L PG ++R RID P D +I
Sbjct: 892 KGLVAEKMVRHELTVP-EDWRSLDALVHGLIRL-PKPGAKMR-RIDVLGVPFDEIPAAMI 948
Query: 457 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT--------- 507
+TGND NR +RL A GYRL+ GL+ K R R +K
Sbjct: 949 YFTGNDYFNRSIRLKARRHGYRLNQRGLY--------KDVARDRKGIKLTEGVPVPGIKH 1000
Query: 508 EKEVFDFLGFPWLEPHER 525
E+++F L P+ EP +R
Sbjct: 1001 ERDIFRVLKVPYCEPEQR 1018
>gi|336472599|gb|EGO60759.1| hypothetical protein NEUTE1DRAFT_76176 [Neurospora tetrasperma FGSC
2508]
gi|350294166|gb|EGZ75251.1| Nucleotidyltransferase [Neurospora tetrasperma FGSC 2509]
Length = 602
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/495 (25%), Positives = 210/495 (42%), Gaps = 60/495 (12%)
Query: 74 VIRYQWLEDSLRLGEKVS-ED--LYR--------IKLDPEGENIADRVLSQIQGNGNTSS 122
V++ W +SL+ G + ED LYR KL A ++ + + SS
Sbjct: 122 VVKLAWFTESLKAGTVLPIEDYTLYRGRKQQSKPAKLQQASPAKAANIIKRALADPKPSS 181
Query: 123 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 182
G +S +HF ++ + P L T + +P
Sbjct: 182 HGSRPGSSHSTTSHGRRDHFITKAPALLHMTTSEHEVELPPIPAYLHTTYACQRPAPT-- 239
Query: 183 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 242
+PP N+ E K+ LG+ +Y AI + P+ ++SA
Sbjct: 240 -----------HPP--NEPFIEELTKIRTARTLLGDKIGVRAYSSAIAALISYPYLLQSA 286
Query: 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302
+V LPG G + QE G+L + + E D ++ + LF E+WG+ TA++ Y
Sbjct: 287 FEVARLPGCGLKIAQLYQEFREQGELQEAKEDESDPRLAVLKLFHEIWGVAETTAREFYN 346
Query: 303 KGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
KG R LDD+ D+LT Q++G+KY+D+ + +IPR EVE + ++ + ++ P +
Sbjct: 347 KGWRDLDDIIEYGWDTLTRVQQIGVKYYDEFQQKIPRAEVESIANIILEHANKIHPGFQM 406
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS----- 415
+ G YRRGK + GD+DVV+ HPD+ + +GF+ + V L++ ++ LI ST +
Sbjct: 407 VIVGGYRRGKLASGDVDVVLSHPDKAATRGFVEQIVVALEQSNYITHTLILSTANTERGQ 466
Query: 416 --------EEGTDSGVDT-----------YFGLCTYPGRELRHRIDFKVYPRDIYAFGLI 456
E+ + +G DT ++ R+D + P ++
Sbjct: 467 EPVAWKGNEKKSGTGFDTLDKALVVWQDPHWTTGEKKNPNPHRRVDIIISPWKTAGCAVL 526
Query: 457 AWTGNDVLNRRLR-LLAESKGYRLDDTGLFPATYGS-----GGKQGVRARTSLKFDTEKE 510
WT R LR + + + D +G+ G+ G G A L E+
Sbjct: 527 GWTSGTTFQRDLRRYCKKERSLKFDSSGIRSRADGTWVDFESGPNGEPAPDMLT--AERR 584
Query: 511 VFDFLGFPWLEPHER 525
VF+ LG W P ER
Sbjct: 585 VFEGLGLEWRPPEER 599
>gi|395850042|ref|XP_003797610.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Otolemur
garnettii]
Length = 491
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 202/444 (45%), Gaps = 52/444 (11%)
Query: 121 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEA-PNSPMSSESLTNTLSTASASP 179
+ E +H ++S E+ +Q T A SE P + + LT +L+ P
Sbjct: 61 ACSSEVTHIVMEQTSAEEAVCWQEHRA----TAAPSECTPATLLDISWLTESLAAGQPVP 116
Query: 180 DFSSHHI-------TDPSLLYNPPDLNKNITEIFGKLINIYRAL----------GEDRRS 222
S H + PS ++ P + T + I++ AL G + S
Sbjct: 117 MESRHRLEVAEPRKAPPSSIWMPAYACQRPTPLTHHNISLSEALETLAEAAGFEGREGHS 176
Query: 223 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
++ +A V+ LP + + Q++GLP G+ +QE++ G ++E E+ +T
Sbjct: 177 LTFLRAASVLRALPRPVVALTQLRGLPHFGEHSFRVVQELLEHGVCEEVERVRHSERFQT 236
Query: 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHEVE 341
+ LF +++G+G TA + Y++G RTLDDL+ + LT Q+ G++Y+ D+ T + + + E
Sbjct: 237 MKLFTQIFGVGVRTADRWYQEGLRTLDDLREQPQRLTQQQKAGVQYYQDLSTPVLQPDAE 296
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
+++L++ A E+VL + G +RRGK D+D +I HP+ G L + ++ L++
Sbjct: 297 ALQQLVEAAVEQVLSGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEAGLLPRVIRCLQD 356
Query: 402 MKF-LREDLIFSTHSEEGTDSGVDTYF--GLCTY-----PGRELRH----------RIDF 443
L + S + G S F C + PG +R R+D
Sbjct: 357 QGLVLYQQYQHSLYGAPGHHSHTMDAFERSFCIFRLPQPPGASVREDPSCPAWKAVRVDL 416
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
V P + F L+ WTG+ + R LR + + KG L+ GLF T
Sbjct: 417 VVAPISQFPFALLGWTGSKLFQRELRRFSRKEKGLCLNSHGLF----------NPEQNTV 466
Query: 503 LKFDTEKEVFDFLGFPWLEPHERN 526
+E+++F LG +L P +RN
Sbjct: 467 FHVASEEDIFRHLGLEYLPPEQRN 490
>gi|340516221|gb|EGR46471.1| predicted protein [Trichoderma reesei QM6a]
Length = 595
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 214/494 (43%), Gaps = 60/494 (12%)
Query: 74 VIRYQWLEDSLRLG-------------EKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT 120
V++ WL DSL G K+S + ++ D S++ +
Sbjct: 117 VVKLAWLLDSLERGVALPVQDYLLYRGRKISSQSLQASTPATPKSQTDEEASRLSHAAKS 176
Query: 121 SSDGESSHRKKIKSSTEDVEHFQAESKGDV---ETNALSEAPNSPMSSESLTNTLSTASA 177
S +S R I SST S+ ET + + P P+ E L T S
Sbjct: 177 SPSARTS-RPGISSSTASDSARAGRSEPPTLYHETTSEHDMPLPPIP-EYLHTTYSCQRP 234
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 236
SP NPP+ I E+ K I R L D +Y +I + P
Sbjct: 235 SP-------------VNPPN-AAFIAEL--KAIRTLRLLRGDHIGVRAYSTSIASLAAYP 278
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
+ I+ +++ LPG G + Q+ TG E D ++ + +F E+WG+G T
Sbjct: 279 YAIQRPQEIERLPGCGVKIARLYQQWTLTGSTDDTRAAETDTEMAVLKMFYEIWGVGDVT 338
Query: 297 AQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 354
A++ Y KG R LDD+ +SL+ Q++G+K++D+ + RIPR E E + ++ V
Sbjct: 339 ARQFYNKGWRDLDDIVEYGWNSLSRVQQIGVKFYDEFQLRIPRQETEAISSVILSHAHRV 398
Query: 355 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFST 413
P ++ GSYRRGK + GD+DV++ HPD G + K V L++ F+ L I++
Sbjct: 399 DPGFQMVVVGSYRRGKPTSGDVDVIVSHPDEAQTLGIIEKLVSSLEKSGFITHILSIWTR 458
Query: 414 HSEEG------------TDSGVDTY-FGLCTYPGRELR------HRIDFKVYPRDIYAFG 454
+SE G + SG DT L + + + R+D V P
Sbjct: 459 NSERGQAPLVWKGDDRPSGSGFDTLDKALVVWQDPDTKEQGGPHRRVDIIVSPWKTAGCA 518
Query: 455 LIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGK-QGVRARTSLKFDT-EKEV 511
++ W+G R LR +++ G + D +G+ G+ +G R + +T E+ V
Sbjct: 519 ILGWSGETTFQRDLRRYCKARLGLKFDSSGVRSRADGAWVDLEGSEGRPAPDMETAERRV 578
Query: 512 FDFLGFPWLEPHER 525
F+ LG W P ER
Sbjct: 579 FEGLGLEWRPPEER 592
>gi|402220520|gb|EJU00591.1| Nucleotidyltransferase [Dacryopinax sp. DJM-731 SS1]
Length = 269
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 143/272 (52%), Gaps = 14/272 (5%)
Query: 261 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSL 317
EI+ TG+L +++ E E+ R LF ++ +G A + + G RTL+D+ K+E L
Sbjct: 2 EIIETGQLQRIQA-EDTEEYRVCRLFAGIYDVGRKRAHEWWRMGLRTLEDVEKRKDEIKL 60
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T +Q +GLKY+DD++ RIPR E + +++ + + + GSYRRG + GD+D
Sbjct: 61 TRNQAIGLKYYDDLQERIPRAEASVIFDKIKELAMTIDGNITLYIMGSYRRGAETVGDID 120
Query: 378 VVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIF--STHSEEGTDSGVDTYFGLCTYP 433
+++ D ++H G L+K ++ L E L DL THS E Y G+ P
Sbjct: 121 ILLTRDPSDGRTHSGMLNKLIRLLHEKGLLTNDLAVPADTHSLE------QKYMGIGRLP 174
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
RID P D LI +TG+D+ NR +RLLA KGY L+ GL+
Sbjct: 175 PDGKMRRIDVLAIPWDQKGAALIYFTGDDLFNRSIRLLAHKKGYSLNQRGLYGGIIRDNK 234
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ + + TEKE+FD LG PW EP ER
Sbjct: 235 RRKMTEGVIIASKTEKEIFDILGVPWREPEER 266
>gi|20067697|emb|CAD29090.1| chimeric DNA-directed DNA polymerase bf4-17 [synthetic construct]
Length = 319
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 178/336 (52%), Gaps = 35/336 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATV-GSLRREEKMLND 189
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG- 434
+D++I+ P++K K L +F+ + L G + G+C P
Sbjct: 190 VDLLIIVPEKKLLKHVLPNI------RRFITDTL----------SKGETKFMGVCQLPSE 233
Query: 435 ---RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
E H RID ++ YA + +TG R+R + G+ +++ + P
Sbjct: 234 NDENEYPHRRIDIRLAEEKPYA--IFHFTGPVSYLIRIR---AALGFTINEYTIRPL--- 285
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 286 --GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 318
>gi|303283880|ref|XP_003061231.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457582|gb|EEH54881.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 368
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 181/379 (47%), Gaps = 68/379 (17%)
Query: 194 NPP---DLNKNITEIFGKLINIY-RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 249
+PP +LN +IT+ L IY + LG+ ++ ++ A I+ LPFK +Q+ P
Sbjct: 13 DPPKGVNLNAHITDKLEDLAEIYDKVLGDPYKAKNHNLAANAIKDLPFKATRIEQLVDPP 72
Query: 250 GIG------KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303
I +++ I EI+TTG+L KLE +++++V + VWG+G A A+ L+
Sbjct: 73 VIPAMASKRSTVRGKINEILTTGRLQKLEELKRNDRVVAVRELTRVWGVGEAKARHLFNV 132
Query: 304 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 363
G +T++ L+ Q +GLKYFD+ R+PR E + +++A P + +
Sbjct: 133 GIKTVNQLRAR------QMIGLKYFDEFDQRMPREEASAIAGYVERAARRACPGCVAVAA 186
Query: 364 GSYRRGKASCGDLDVVIMHPDRK------------------SHKGFLSKYVKKLKEMKFL 405
GSYRRGK +CGDLDV+I P R+ + K L + +L+ L
Sbjct: 187 GSYRRGKPTCGDLDVLI-SPTREWMTAESCGSLGDGRGGVSTFKDILPTVLAELRGKGVL 245
Query: 406 REDLIFSTHSEEGTDSGVDTYFGLC----------------TYPGRELRHRIDFKVYPRD 449
+DL G D+Y GL P R R RID KVY +
Sbjct: 246 TDDL----------SVGKDSYMGLARADADADGGGGMGVVPVEPARTHR-RIDVKVYAPE 294
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 508
F L+ +TG+ NR +R A+ + G L+D G+F T + K T + D E
Sbjct: 295 ELPFALLYFTGSGYFNRSMRYWAKRRFGLSLNDKGIFRETSNAASKV-----TDAEIDDE 349
Query: 509 KEVFDFLGFPWLEPHERNL 527
+VF++L ++ P +R++
Sbjct: 350 ADVFEYLRLKYVAPEDRSV 368
>gi|328868842|gb|EGG17220.1| phosphatase tensin type domain-containing protein [Dictyostelium
fasciculatum]
Length = 1026
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 168/336 (50%), Gaps = 19/336 (5%)
Query: 197 DLNKNITEIFGKLINIYRALGE-DR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 254
+ N++IT + KL+ +ALG+ DR R ++Y +AI +++ L FK+ S+ + + GIG
Sbjct: 701 NYNESITSVLEKLLE--KALGDGDRWREYAYKRAIGILKGLTFKLSSSKDLGDIRGIGPK 758
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314
+++ I EI+ TG L ++E D + ++ G GP T + G ++ L+
Sbjct: 759 IREKIDEIIETGTLRRVESSLSDTTNQISQALLKIHGAGPNTVKNWMAAGVVSIQQLRQH 818
Query: 315 D-----SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
LT Q +GLKY++D TRIPR EV + +++ +E+ P +I+ GS+RR
Sbjct: 819 ILIDPLFLTSQQHIGLKYYEDFLTRIPRLEVINIVSIIENVVKELDPNIIMEVCGSFRRM 878
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
K CGD+D++ H + G L + KL+ + L + L S D Y G+
Sbjct: 879 KKDCGDIDILFTHSKGEILNGLLRRLTLKLESINLLTDHL-------TSVKSDSDKYMGV 931
Query: 430 CTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 489
C L RIDF+ ++ + F L+ +TG+D NR +RL A G+ L ++ L
Sbjct: 932 CRLGPDGLHRRIDFQTISKEEWPFALLYFTGSDHFNRSMRLWARRNGFSLSESHLVRRM- 990
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G + + EK++F LG + P +R
Sbjct: 991 --GKNENEIKGDPIHASCEKDIFALLGLEYRHPQDR 1024
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 9 PTPALDSNGIFAGMRVFLV-EKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE 67
P P D I +F + +KG+ + I + K++ G T+ + ++ TH+L D
Sbjct: 411 PPPVPDRKIIMFKNNIFYINKKGIGRLQQNIIQTKIISNGGTICQHITTLTTHILVQDST 470
Query: 68 A--------------LLQQSVIRY--QWLEDSLRLGEKVSED 93
+ +L +S++ Y WL S++ GEK+ +D
Sbjct: 471 SIIDPITLSSDFKDLILSKSIVGYTINWLTLSIQKGEKIIDD 512
>gi|335304364|ref|XP_003134280.2| PREDICTED: DNA polymerase beta-like [Sus scrofa]
Length = 248
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 132/218 (60%), Gaps = 6/218 (2%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL K+ED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL 409
+DV++ HP+ S L + V++L+++ F+ + L
Sbjct: 191 MDVLLTHPNFTSESAKQPKLLHRVVEQLQKVHFITDTL 228
>gi|358056929|dbj|GAA97279.1| hypothetical protein E5Q_03957 [Mixia osmundae IAM 14324]
Length = 735
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 15/335 (4%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N++I ++ + + Y +R KA + + +I++ D+ L G+G+S
Sbjct: 406 NEDICQVLDGIHDAYDPKDTFQR-MGIRKAQSALRRSSVRIDTFDKAFALKGVGESNASK 464
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 315
I EI TG +L F + E T ++ +++G+G A+ Y+ G RTLDDL+
Sbjct: 465 IVEIARTGNHRRLTIFAR-EGQETKAMLNKIYGVGFRIAENWYKAGVRTLDDLRTNPLRY 523
Query: 316 --SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
L Q+LGL+Y+D++ R+ R E Q+ +Q V + GSYRRG+ +C
Sbjct: 524 GIKLNEGQQLGLQYYDELNQRMSRSEATQLYETIQNTCRRVDLRTQVHLMGSYRRGQPTC 583
Query: 374 GDLDVVIMHPDR--KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
GD+D+++ R ++H G + + + LKE +R DL H D+ + GLC+
Sbjct: 584 GDIDILVTRDTRDGRTHAGVIPRLLTLLKEGNIVRHDLSLP-HDPNALDA---KWMGLCS 639
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP-ATYG 490
PG + RID P + LI +TGND+ NR LRL A GY L+ GL+
Sbjct: 640 LPG-GIHRRIDILGVPFEQLGAALIYFTGNDIFNRSLRLKARRMGYSLNQRGLYADLIRD 698
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
K V + TE+E+F L PW P +R
Sbjct: 699 HKTKLKVTEGHIIASATEEEIFAILKVPWRPPDDR 733
>gi|171692149|ref|XP_001910999.1| hypothetical protein [Podospora anserina S mat+]
gi|170946023|emb|CAP72824.1| unnamed protein product [Podospora anserina S mat+]
Length = 618
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 138/512 (26%), Positives = 224/512 (43%), Gaps = 80/512 (15%)
Query: 74 VIRYQWLEDSLRLGEKVSED----LYRIK--LDPEGENIADRVLSQIQGNGNTSSDGESS 127
V + W DSL GE + D +YR + + P + + + + E S
Sbjct: 124 VAKLSWFTDSLSAGEVLPLDDKYAIYRGRKAMQPPPAPASVQTTPTKSTSNILTRAHEDS 183
Query: 128 HRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNT------LSTASASPDF 181
H + SS + + S+G S+ P S +S +T T L ++ D
Sbjct: 184 HPRTPPSSQK-----RYSSQGS------SQKPGSTYASHPVTKTPKRPALLRQTTSEHDL 232
Query: 182 SSHHITDPSLLY-----------NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAI 229
+H P L+ NPP N+ + + I + R L D+ +Y AI
Sbjct: 233 DTHLPPIPPCLHTTYSCQRSTPANPP--NQEFISLLLQ-IRLARTLTGDKIGVRAYSSAI 289
Query: 230 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 289
+ PF ++ ++V LPG G+ + QE T+G L + E ++ D K++ + LF ++
Sbjct: 290 ATVAAYPFPFQTQNEVARLPGCGQKIALLYQEYKTSGTLKEAEEYKSDPKLQVLKLFYDI 349
Query: 290 WGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 347
WG+ TA++ Y KG R +DD+ D LT Q++G+KY+D+ +IPR EVE++ ++
Sbjct: 350 WGVAETTAREFYNKGWRDIDDVVEYGWDGLTRVQQIGVKYYDEFLLKIPRREVEEIGGVI 409
Query: 348 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 407
K ++ ++ G YRRGK GD+DVV+ H D ++ +GF+ + V L+ ++
Sbjct: 410 LKEANKIEEGFGMVIVGGYRRGKKESGDVDVVLSHRDEEATRGFVERIVVGLERRGYITH 469
Query: 408 DLIFST-HSEEGTD------------SGVDTY--------------FGLCTYPGRELRHR 440
L+ ST ++E G + SG DT G T P R R
Sbjct: 470 TLLLSTANTERGQEPVAWKGDSRVAGSGFDTLDKALVVWQDPNYEGEGRNTNPHR----R 525
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYG------SGG 493
+D + P ++ WT R L R + KG + D +G+ G S
Sbjct: 526 VDIIISPWKTAGCAVLGWTSGTTFQRDLRRYCKKEKGLKFDSSGVRSRKDGAWVDLESDP 585
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G A L E+ VF+ +G W EP ER
Sbjct: 586 VTGEPAPDMLT--AERRVFNGVGLEWREPEER 615
>gi|134114790|ref|XP_773693.1| hypothetical protein CNBH1480 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256321|gb|EAL19046.1| hypothetical protein CNBH1480 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 791
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 27/340 (7%)
Query: 199 NKNITEIFGKLINIYRA-LGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N+ + E F +L ++Y +G++ S Y+ A + + F I S Q + + GIG+++
Sbjct: 464 NEWLAEKFDQLHDLYEGQVGKNPHSIRQYRNAAAAMRRTTFPITSGAQAREINGIGEALA 523
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E ++ + +E +E R ++LF +++G+G A +LY G RT+ DL+
Sbjct: 524 ERINEFIS--GVPGRTFYEDNEHARCVALFKDIYGVGRQYANELYRMGARTITDLRTGRF 581
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L+ Q++GL ++D+++RIPR E +Q+ L++ + V ++ + GSYRRG + GD
Sbjct: 582 PLSTGQQIGLALYEDLRSRIPREECKQIYELIKLEAKTVDEKLWVEIMGSYRRGSETSGD 641
Query: 376 LDVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
+D++I D KSHKG + K V KLK + +L + H ++ + G+
Sbjct: 642 VDILITRDDADGKSHKGAIKKLVDKLKAKGVITHEL-SAPHDWNALEA---KWMGVGRVG 697
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
+ RID P + + LI +TG ++ NR LRL A GY L+ GL+
Sbjct: 698 QSAMYRRIDILCVPYESWGASLIYFTGKNLFNRSLRLYARRLGYNLNQRGLY-------- 749
Query: 494 KQGVRARTSLKF--------DTEKEVFDFLGFPWLEPHER 525
+ VRAR K TE+ +F LG W PH R
Sbjct: 750 RNVVRARDGTKVLEGDRVASRTEEGIFQELGLRWRHPHHR 789
>gi|119495890|ref|XP_001264721.1| DNA polymerase POL4, putative [Neosartorya fischeri NRRL 181]
gi|119412883|gb|EAW22824.1| DNA polymerase POL4, putative [Neosartorya fischeri NRRL 181]
Length = 674
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 145/274 (52%), Gaps = 9/274 (3%)
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+LDDLK +
Sbjct: 405 LADKIEEIVFTNRLRRLENANNTPEDLVLQEFLGVYGAGISQASRWIAQGYRSLDDLKTK 464
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
SLT SQR+G++++ D RIPR EVE +++KA ++ P + ++ GGSYRRG + G
Sbjct: 465 ASLTKSQRIGVEHYHDFAQRIPRREVEAHGEIVRKAVQKADPGMQVIIGGSYRRGASDSG 524
Query: 375 DLDVVIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 431
D+D++I D + + + +L + FL+ L ST +G+ + G
Sbjct: 525 DIDLLITKGDATIEQITAMMMDTVIPRLFQDGFLQVSLA-STSRSDGS-----KWHGASV 578
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
PG ++ RID P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 579 LPGSKIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYADVLRG 638
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ + L E+ +F+ LG PW P R
Sbjct: 639 ELRKKLSEGRLLDGRDERRIFEILGVPWRPPEHR 672
>gi|346979683|gb|EGY23135.1| DNA polymerase lambda [Verticillium dahliae VdLs.17]
Length = 381
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 170/364 (46%), Gaps = 40/364 (10%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
NPP N E ++ + LG++ +Y AI + P+ I ++ LPG G
Sbjct: 23 NPP--NNEFVEALKEIRTTRKLLGDEIGVRAYSTAIATVAAYPYAISTSPAR--LPGCGS 78
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 311
+ + + TTG L +++ +++ ++ LF +WG+G TA++ Y+KG R LDDL
Sbjct: 79 KIAELYHQWKTTGSLGEIDSSQQEARLPVFRLFYNIWGVGDTTAREFYKKGWRDLDDLVE 138
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
D L+ Q++G+KY+D+ IPRHEVE + + + +E+ P + G +RRGK
Sbjct: 139 YGWDRLSRVQQIGVKYYDEFLQPIPRHEVEAIAATILRQAQEIEPGFQLTIVGGHRRGKK 198
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------------- 417
S GD+DV++ H D + F+ + V L++ +F+ L STH+ E
Sbjct: 199 SSGDVDVILSHADEDATYRFIERLVASLEKAQFITHTLTLSTHNSERGQKPLTWKADTAR 258
Query: 418 ----GTDSGVDTYFGLCTYPGRE------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
G D+ +D + PG + R+D + P ++ W+G R
Sbjct: 259 TKGAGFDT-LDKAMVVWQEPGSKDSASDRPHRRVDIIISPWKTVGCAVLGWSGGTTFQRD 317
Query: 468 LRLLAESK-GYRLDDTGLFPATYGSG-----GKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
+R + + GY+ D +G+ + GS G QG E+ VF+ LG W
Sbjct: 318 VRRYCKKELGYKFDSSGIRKRSDGSWVDLERGNQGTAPDM---VTAEQRVFEGLGLDWQP 374
Query: 522 PHER 525
P +R
Sbjct: 375 PEQR 378
>gi|119570147|gb|EAW49762.1| polymerase (DNA directed), lambda, isoform CRA_f [Homo sapiens]
Length = 188
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 307
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 27 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 84
Query: 308 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYR
Sbjct: 85 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYR 144
Query: 368 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI 410
RGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+
Sbjct: 145 RGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV 187
>gi|406698945|gb|EKD02166.1| hypothetical protein A1Q2_03528 [Trichosporon asahii var. asahii
CBS 8904]
Length = 919
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 172/334 (51%), Gaps = 31/334 (9%)
Query: 199 NKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+ + + F KL IY+A G++ S Y P +I+S Q++ L +SM+
Sbjct: 521 NEALAKEFDKLHAIYKATPGKNEFSILQYS-----RGHPEQIKSGSQIRHL----RSMK- 570
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-S 316
+ TG +L +FE ++ RTI+ F V+G+G A +LY +G R+++DL +D
Sbjct: 571 -----LLTGAKGRL-YFEDTDQARTIAKFQNVYGVGSRCAHELYSRGARSIEDLATKDFG 624
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
LT Q++G+K +DD+ RIPR E Q+ +++ +V + GSYRRG+A+ GD+
Sbjct: 625 LTVGQKIGVKLYDDLCARIPREECRQLFEIVRDQTLSFDDKVFVEIMGSYRRGEANSGDI 684
Query: 377 DVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD---TYFGLCT 431
D++I D K+H+G + K V+ L E KF+ TH+ + D + G+C
Sbjct: 685 DILITRDPSDGKTHQGLIGKVVQALSEKKFI-------THALGAPNDWQDLECKWMGVCR 737
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
P + RID P + L+ +TGN + NR +RL A +G+ L+ GL+ +
Sbjct: 738 LPN-GIHRRIDILSIPWEQKGAALLYFTGNAIFNRSMRLYARKRGFSLNQRGLYRNVIRN 796
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ V + TE+E+FD L W PH R
Sbjct: 797 RQSEKVTEGEIVASRTEEEIFDILEIRWRPPHLR 830
>gi|334313404|ref|XP_003339896.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed DNA/RNA polymerase
mu-like [Monodelphis domestica]
Length = 497
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 176/354 (49%), Gaps = 39/354 (11%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++TE L G R S+++A V++ LP I + Q+ GLP IG
Sbjct: 156 NFHLTEALETLAEAADFEGSQGRFISFHRAASVLKALPDPITNMSQLHGLPHIGDHSSRI 215
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 317
IQE++ G +++E + ++ +T+ LF +++G+G TA + Y++G RTLDDL K+ L
Sbjct: 216 IQELLEHGVSNEVETIKLSKRYQTMKLFTQIFGVGVKTADRWYQEGLRTLDDLQKHSRKL 275
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q G+ +F+D+ T + RHE + +++++++ +++LP ++ G +RRGK D+D
Sbjct: 276 TRQQEAGIHHFEDLNTPVYRHEADAIQQIVEEVVQQMLPGARVILAGGFRRGKPHGHDVD 335
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD------SGVDTY---FG 428
+I HP G LSK + +L+ + L T S + D + +D Y F
Sbjct: 336 FLITHPVEGLEAGLLSKVMGRLESQGLV---LYRHTQSPKNPDNTAFQSTAMDDYEKCFS 392
Query: 429 LCTYP-----------GRELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA- 472
+ +P G R R+DF V P +AF L+ WTG+ R LR +
Sbjct: 393 ILWFPKSPTTSSHLEAGESSRDGKAVRVDFVVTPISQFAFALLGWTGSQYFERELRRFSL 452
Query: 473 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
K L++ GL+ + +L +E+++F LG ++ P +RN
Sbjct: 453 NEKRLLLNNHGLY----------NPEKKETLPAASEEDIFKHLGLDYIPPEQRN 496
>gi|290999104|ref|XP_002682120.1| predicted protein [Naegleria gruberi]
gi|284095746|gb|EFC49376.1| predicted protein [Naegleria gruberi]
Length = 309
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 145/311 (46%), Gaps = 53/311 (17%)
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 327
+ ++E + + I F ++WG+G TA +LY G+R ++++ ++ L Q +GLKY
Sbjct: 1 MKRVEGISSSYQNQIIQEFTKIWGVGQKTAFQLYSYGYRNINEI-DKSKLNSQQLIGLKY 59
Query: 328 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV-VIMHPDRK 386
F + + RIPR EVEQ+ L+ + E+ P ++ GSYRRGK GD+D+ + + D
Sbjct: 60 FYEFQQRIPRMEVEQIYNLINQVCYEINPFIVCQVCGSYRRGKQDSGDVDILITLKQDEN 119
Query: 387 SHK--------------------------------------------------GFLSKYV 396
++ G L K V
Sbjct: 120 DNQFSSIELSSNESSSIESNELITINNINNNNNNNNNHINNNHNNNNEKIIIDGLLQKIV 179
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLI 456
KL+EMK + + L S D DT+ G+ P + RID KVY R+ +AF L+
Sbjct: 180 TKLEEMKIITDTLSISCKIHLNQDEN-DTFMGVYYLPQIGIHRRIDIKVYRREHFAFALL 238
Query: 457 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 516
+TG+D NR LRLL KGY L D L T + T + TE ++F+F+G
Sbjct: 239 YFTGSDHFNRSLRLLCRKKGYSLSDKSLCINTIRDSKSNRIHDGTKINCKTENDIFNFIG 298
Query: 517 FPWLEPHERNL 527
P+ EP +R++
Sbjct: 299 IPFKEPKDRDV 309
>gi|405974067|gb|EKC38737.1| DNA polymerase beta [Crassostrea gigas]
Length = 373
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 184/377 (48%), Gaps = 66/377 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP-------- 249
NK+ + +L N + + + +Y KA+ V+ K P +++S + K L
Sbjct: 13 NKDFCDFLMELANYEKNVNRQMHKYNAYRKAVGVLAKHPTRVKSGAEAKKLARTRLVISY 72
Query: 250 ---------------------------GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
GIG + I E + TG L KLE D+
Sbjct: 73 FFKIIFAPRSTSQVLSLAGLIPSVPGDGIGDKIAKKIDEYIDTGSLRKLEKIRADDTSVA 132
Query: 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 341
I+ +V GIGPA AQKL ++G ++++L K+ D L H Q++GLK+F+D + RIPR E+E
Sbjct: 133 INELTKVTGIGPAAAQKLVQEGITSIEELRKHPDKLNHHQQIGLKHFEDFEKRIPRAEME 192
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH-KG---FLSKYVK 397
Q++ ++ + GS+RRG S GD+D+++ HPD S KG L + VK
Sbjct: 193 QIQDTAFSEIRKLDDKFEARVCGSFRRGAESSGDIDILLTHPDYTSKTKGKPDLLHQVVK 252
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC----TYPG----RELRHRIDFKVYPRD 449
+L+++ + + L+ G + G+C + PG R R RID ++ P D
Sbjct: 253 RLEKVGLITDTLV----------HGDFKFMGVCRVLESSPGSSKERCFR-RIDIRLIPHD 301
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 509
Y L+ +TG+D+ N+ +R A G+ L++ L P GS G G L +E+
Sbjct: 302 QYYCALLYFTGSDIFNKNMRAHALEVGFTLNEYTLRP--LGSTGTPG----EPLPVTSEE 355
Query: 510 EVFDFLGFPWLEPHERN 526
++FD+LG + +P++RN
Sbjct: 356 DIFDYLGMEYKQPYQRN 372
>gi|426227873|ref|XP_004008039.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Ovis aries]
Length = 488
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 33/350 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R S+Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQISFYRAASVLKALPSSVTALSQLQGLPHFGEHSCRV 208
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTLDDL+ E L
Sbjct: 209 VQELLEHGVCDEVERIRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLDDLQEESHRL 268
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ I R EVE ++++++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSALILRSEVETLQQVVEAAVTQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL---------REDLIFSTHSEEGTDSGVDTYFG 428
+I HP G L + + LKE + + DL +H+ + + F
Sbjct: 329 FLITHPQEGQEAGLLPRVMCYLKEQGLVLYHQHQHSQQGDLTQQSHTMDAFERSF-CIFR 387
Query: 429 LCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKG 476
L PG + R+D V P + F L+ WTG+ R LR + + KG
Sbjct: 388 LPQPPGAAVGGAQKPCFTWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKEKG 447
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L+ GLF +T +E+++F L +L P +RN
Sbjct: 448 LCLNSHGLF----------DPEQKTVFHVASEEDIFRLLDLEYLPPEQRN 487
>gi|385721243|gb|AFI72772.1| mutant DNA polymerase beta, partial [Homo sapiens]
Length = 238
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 376 LDVVIMHP 383
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|20067703|emb|CAD29093.1| chimeric DNA-directed DNA polymerase bf4-20 [synthetic construct]
Length = 331
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 183/343 (53%), Gaps = 37/343 (10%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEVI------ILCGGSYRR 368
L H QR+GLKYF+D + RIP + +++ L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRR 190
Query: 369 GKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
+ D+D++I+ P++K L K+V ++F+ + L G + G
Sbjct: 191 EEKMLNDVDLLIIVPEKK-----LLKHVLPNIRIRFITDTL----------SKGETKFMG 235
Query: 429 LCTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
+C P E H RID ++ P + + + +TG ++ +R+ A KG+ +++
Sbjct: 236 VCQLPSENDENEYPHRRIDIRLIPAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYT 293
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 294 IRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 330
>gi|254571841|ref|XP_002493030.1| DNA polymerase IV [Komagataella pastoris GS115]
gi|238032828|emb|CAY70851.1| DNA polymerase IV [Komagataella pastoris GS115]
gi|328352960|emb|CCA39358.1| DNA polymerase IV [Komagataella pastoris CBS 7435]
Length = 563
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 217/473 (45%), Gaps = 43/473 (9%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
V+R W+ DSL EK KL P + + S + G + ES +K
Sbjct: 104 VLRLAWVTDSLE--EK--------KLLP----YSKYLFSFPEQKGKVKRERESESLSDVK 149
Query: 134 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLY 193
E + + +S D E + + E SP E + + S S S+ +D L
Sbjct: 150 EEKEPSKKRKRKS-VDEEHSLIFEKLASPPKIEDIKKKVLADSESLRASTPE-SDEEDLK 207
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + N+ I F ++ + G +S SY +AI I+ P +IE + +P IGK
Sbjct: 208 NMSN-NELIIHYFSQMAKERKVEGLQFKSLSYLRAINAIKNAPKEIECREDALSIPKIGK 266
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
S+ DH EI+ T K +L+ ++ + + ++ G+G ++K + G R++ D+
Sbjct: 267 SLADHCVEIIETRKFGQLKRQQESTEAHVMKELQKIHGVGAVISEKWFNHYGVRSIPDIF 326
Query: 313 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
E T + +LGL Y+ D +IPR EV + G+++ P+ I+ GSYRR
Sbjct: 327 EKVPESEFTDAIKLGLYYYYDWNQKIPREEVTAHSEFVSDVGKKIDPKFIVQTVGSYRRE 386
Query: 370 KASCGDLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
+CGD+D IM D FL+ VK+L + +L+ L F H + + +
Sbjct: 387 TKTCGDVDFFIMKEDCNDETKLSQFLTTLVKELFKSGYLKCSL-FPAHDQ------LLKF 439
Query: 427 FGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
++ R+DF A LI +TGND+LNR +R LA +KG RL++ GLF
Sbjct: 440 LTGGQLTDKKFCRRVDFLAVKWKYRAGALIYFTGNDILNRYMRTLANNKGLRLNNEGLFK 499
Query: 487 A---TYGSGGKQGVRAR---------TSLKFDTEKEVFDFLGFPWLEPHERNL 527
K G+R T ++ + E+++F+ LG +LEP +RN+
Sbjct: 500 PKRRVIDEANKMGIRLSKMHFKEDDWTLVEGEDEEKIFNLLGLRYLEPKDRNI 552
>gi|85102863|ref|XP_961407.1| hypothetical protein NCU01321 [Neurospora crassa OR74A]
gi|11595591|emb|CAC18211.1| related to DNA polymerase Tdt-N [Neurospora crassa]
gi|28922952|gb|EAA32171.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 602
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 170/364 (46%), Gaps = 36/364 (9%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
+PP N+ E K+ LG+ +Y AI + P+ ++SA +V LPG G
Sbjct: 240 HPP--NEPFIEELMKIRTARTLLGDKIGVRAYSSAIAALISYPYPLQSAFEVARLPGCGL 297
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 311
+ QE G+L + + E D ++ + LF E+WG+ TA++ Y KG R LDD+
Sbjct: 298 KIAQLYQEFREQGELQEAKEDESDPRLAVLKLFHEIWGVAETTAREFYNKGWRDLDDIVE 357
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
D+LT Q++G+KY+D+ + +I R EVE + ++ + ++ P ++ G YRRGK
Sbjct: 358 YGWDTLTRVQQIGVKYYDEFQQKIARAEVESIANIILEHANKIHPGFQMVIVGGYRRGKL 417
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH-------------SEEG 418
+ GD+DVV+ HPD+ + +GF+ + V L++ ++ LI ST +E+
Sbjct: 418 ASGDVDVVLSHPDKAATRGFVEQIVVALEQSNYITHTLILSTANTERGQEPVAWKGNEKK 477
Query: 419 TDSGVDTY-FGLCTYPGREL----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
+ +G DT L + R+D + P ++ WT R
Sbjct: 478 SGTGFDTLDKALVVWQDPHWTTDEKKNPIPHRRVDIIISPWKTAGCAVLGWTSGTTFQRD 537
Query: 468 L-RLLAESKGYRLDDTGLFPATYGS-----GGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
L R + + + D +G+ G+ G G A L E+ VF+ LG W
Sbjct: 538 LRRYCKKERSLKFDSSGIRSRADGTWVDFESGPNGEPAPDMLT--AERRVFEGLGLEWRP 595
Query: 522 PHER 525
P ER
Sbjct: 596 PEER 599
>gi|403278452|ref|XP_003930819.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Saimiri
boliviensis boliviensis]
Length = 494
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 128/532 (24%), Positives = 220/532 (41%), Gaps = 87/532 (16%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQSVIRY 77
F G+ ++LVE + R + G V + S +VTHV+ A
Sbjct: 26 CFPGVAIYLVEPHMGRSRRAFLTRLARSKGFRVLDSCSSEVTHVVMEQTSA--------- 76
Query: 78 QWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTE 137
E +S R+ P G + R L I + + G+
Sbjct: 77 ---------EEAISWQERRMSAAPPG--CSPRALLDISWFTESLAAGQP----------- 114
Query: 138 DVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPD 197
E + +E + P SP + A P +HH
Sbjct: 115 ----VPVECRHRLEVARPGKGPPSPAWMPAY------ACQRPTPVTHH------------ 152
Query: 198 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 -NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSR 211
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DS 316
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ +
Sbjct: 212 VVQELLEHGVCEEVERVRHSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLQEQPQK 271
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
LT Q++GL++ D+ T + R +V+ +++ +++A + +P + G +RRGK D+
Sbjct: 272 LTQQQKVGLQHHQDLSTPVLRSDVDALQQAVEEAVAQAMPGATVTLTGGFRRGKLQGHDV 331
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT----DSGVDTY------ 426
D +I HP G L + + +L++ + +H E T S +D +
Sbjct: 332 DFLITHPKEGQEAGLLPRVMHRLQDQGLILYHQHHHSHWESPTRLAQQSHMDAFERSFCI 391
Query: 427 FGLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ES 474
F L PG R+D V P + F L+ WTG+ + R LR + +
Sbjct: 392 FRLPQAPGAAAGGTPRSCPSWKAVRVDLVVVPISQFPFALLGWTGSKLFQRELRRFSRKE 451
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG L+ GLF +T +E+++F LG +L P +RN
Sbjct: 452 KGLWLNSHGLF----------DPEQKTFFHASSEEDIFRHLGLEYLPPEQRN 493
>gi|6851052|emb|CAB71154.1| DNA polymerase mu [Mus musculus]
Length = 496
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 339
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 400 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 439
+ ++ R L S H+ S +D + F + P +
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDVFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|307209304|gb|EFN86389.1| DNA polymerase beta [Harpegnathos saltator]
Length = 333
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 158/309 (51%), Gaps = 23/309 (7%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y A ++ LP +I++A + LPGIGK + DHI E + TG +L+ +KD+K I
Sbjct: 41 NYRNAAEMLSALPGRIKNAYEAMKLPGIGKKIADHINEFLETGTHKELQQVKKDDKQDAI 100
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
L ++ GIGPA A++L G TL+DLK +ED L QR+ LKYFDD + +I R E+ +
Sbjct: 101 ILLMKIPGIGPAKAEQLISAGIETLEDLKQHEDKLNRQQRIELKYFDDFEKKITRDEIMR 160
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK-- 400
+E L + A EE+ + ++ GSYRRG + V+ HPD KS+ +KK
Sbjct: 161 IENLFKDAIEELDNKYLVTFCGSYRRGLEDNEPIIAVVTHPDYKSN-------IKKKDTE 213
Query: 401 -EMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGREL--RHRIDFKVYPRDIYAFGLIA 457
MK + E L E G T+ G C P R+ R++ ++ D Y +
Sbjct: 214 ITMKAILECLEDKNLIRETISLGAITFMGACRLPRRKKGPFRRLNIQLVFYDHYYCAALY 273
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
+TG+++ N+ +R A K Y L+ L T G + TS EK +FD LG
Sbjct: 274 YTGSEIFNKVIRAHALEKKYILNKHTLKSVTTGK-----IEEITS-----EKSIFDILGL 323
Query: 518 PWLEPHERN 526
+ P RN
Sbjct: 324 SYEFPQWRN 332
>gi|226423875|ref|NP_059097.2| DNA-directed DNA/RNA polymerase mu [Mus musculus]
gi|408360062|sp|Q9JIW4.2|DPOLM_MOUSE RecName: Full=DNA-directed DNA/RNA polymerase mu; Short=Pol Mu;
AltName: Full=Terminal transferase
gi|148708614|gb|EDL40561.1| polymerase (DNA directed), mu, isoform CRA_b [Mus musculus]
Length = 496
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 339
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 400 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 439
+ ++ R L S H+ S +D + F + P +
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|452847333|gb|EME49265.1| hypothetical protein DOTSEDRAFT_76625 [Dothistroma septosporum
NZE10]
Length = 827
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 147/290 (50%), Gaps = 9/290 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N I ++ + Y G++ R +Y KA+ + P ++ S ++ LP +G+ +
Sbjct: 389 NTATITILQQMADYYGQTGDEWRIRAYRKAMSSLRNHPTRVTSKEEALALPNVGERLATK 448
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EI T +L +L++ + + + + F V+G G A + G+ TLD++ + SLT
Sbjct: 449 IEEIAFTNRLRRLDNAKAEPNDQVLQTFMGVYGAGLVQASRWVSAGYTTLDEVLQKASLT 508
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++++ D +RIPR EV + +++ A +++ ++ GGSYRRG GD+D
Sbjct: 509 QNQRIGIEHYADFNSRIPRAEVARHGSVVRGALKKIDSAFEVIVGGSYRRGSKDSGDIDC 568
Query: 379 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+I P + + V +L FL L ++ D G + G P
Sbjct: 569 IITRPGTNADHLRNVVFGQVVPQLTASGFLVASLAITSR-----DDG-SKWHGASCLPDS 622
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
R+D + P D LI +TGND+ NR LRLLA +KG RL+ GLF
Sbjct: 623 SAWRRLDLLLVPSDELGAALIYFTGNDIFNRSLRLLASTKGMRLNQHGLF 672
>gi|6746423|gb|AAF27552.1|AF176098_1 DNA polymerase mu [Mus musculus]
Length = 496
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 339
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 400 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 439
+ ++ R L S H+ S +D + F + P +
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|122920611|pdb|2IHM|A Chain A, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
gi|122920612|pdb|2IHM|B Chain B, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
Length = 360
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 39 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 98
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHE 339
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 99 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 158
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 159 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 218
Query: 400 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 439
+ ++ R L S H+ S +D + F + P +
Sbjct: 219 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDVFERSFCILGLPQPQQAALAGALPPCPTW 278
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 279 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDP-------- 330
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ +E++VF LG +L P +RN
Sbjct: 331 --EQKRVFHATSEEDVFRLLGLKYLPPEQRN 359
>gi|291394899|ref|XP_002713892.1| PREDICTED: DNA-directed DNA polymerase mu-like [Oryctolagus
cuniculus]
Length = 495
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 164/356 (46%), Gaps = 36/356 (10%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
P N ++E L G + R S+ +A V+ LP + + Q++GLP G+
Sbjct: 150 PHHNTALSEALETLAEAAGFEGSEGRLLSFRRAASVLRALPRPVTAHSQLQGLPHFGEHS 209
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315
+QE++ G ++E E+ RT+ LF +++G+G TA + Y++G RTLDDL+ +
Sbjct: 210 SRVVQELLEHGVCEEVERVRSSERFRTMKLFTQIFGVGVRTADRWYQEGLRTLDDLRQQP 269
Query: 316 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
LT QR GL+Y D+ T + R E E ++ L++ A + LP + G +RRGK
Sbjct: 270 RRLTAQQRAGLQYHQDLSTPVQRPEAEALQHLVEAAVGQALPGATVTLTGGFRRGKLLGH 329
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------------REDLIFSTHSEEGTDSG 422
D+D +I HP G L + + L+ + E L + S + +
Sbjct: 330 DVDFLISHPKEGREAGLLPRVMHHLQSQGLVLYHQHQPSCFGAPERLARPSRSMDAFERS 389
Query: 423 VDTYFGLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
+ F L PG L R+D V P + F L+ WTG+++ R LR
Sbjct: 390 L-CIFRLLQPPGAALGGPAKAGPAWKAVRVDLVVAPSSQFPFALLGWTGSELFERELRRF 448
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ + KG L GLF G T + +E+++F LG +L P +RN
Sbjct: 449 SRKEKGLWLSSHGLFDPEQG----------TFISAASEEDIFRRLGLRYLPPEQRN 494
>gi|20067711|emb|CAD29097.1| chimeric DNA-directed DNA polymerase bf2-7a [synthetic construct]
Length = 320
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 177/340 (52%), Gaps = 42/340 (12%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASC 373
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKML 190
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
D+D++I+ P++K K L K G+ +C
Sbjct: 191 NDVDLLIIVPEKKLLKHVLPNIRIK-----------------------GLSFSVKVCGER 227
Query: 434 GRELRHRIDFKVYPRDIYA-------FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 486
L + K Y D++ + + +TG ++ +R+ A KG+ +++ + P
Sbjct: 228 KCVLFIEWEKKTYQLDLFTALAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRP 285
Query: 487 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 286 L-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 319
>gi|148708613|gb|EDL40560.1| polymerase (DNA directed), mu, isoform CRA_a [Mus musculus]
Length = 360
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 39 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 98
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHE 339
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 99 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 158
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 159 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 218
Query: 400 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 439
+ ++ R L S H+ S +D + F + P +
Sbjct: 219 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 278
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 279 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDP-------- 330
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ +E++VF LG +L P +RN
Sbjct: 331 --EQKRVFHATSEEDVFRLLGLKYLPPEQRN 359
>gi|326434337|gb|EGD79907.1| hypothetical protein PTSG_10190 [Salpingoeca sp. ATCC 50818]
Length = 667
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 158/317 (49%), Gaps = 25/317 (7%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
++ + + A+ I ++ I + +Q + +P +G I EI++TG L +LE F+ EK
Sbjct: 364 KASNLHTALAFIRRMKEPITTYEQARRIPKVGNETAKKIDEILSTGTLQRLEAFDTPEK- 422
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
R F +++G+G ATA++ KG RT+ DL N+ LT QR+G++ +++ RIPR E
Sbjct: 423 RAQHEFSQIYGVGTATAKQFVAKGFRTIQDLLDNQHELTERQRIGVRLHQELQERIPRTE 482
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
V++M ++ + P I GSYRRGK +CGD+DV+I H D++ + + L
Sbjct: 483 VDRMVAHVKHVVLSIEPGCIFEACGSYRRGKKTCGDVDVLISHRDKRVLDTLFKRVIDAL 542
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWT 459
+ FL DL S EG +S Y G+ R+D V P + + ++ +T
Sbjct: 543 HDDGFLTHDLARS----EG-ESTQYKYMGIGKLKDASFHRRVDIIVVPWEEWPCAILYFT 597
Query: 460 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR----------TSLKFDTEK 509
G+ NR +RLLA G+ L + YG VR R + + +E
Sbjct: 598 GSGAFNRSMRLLARKMGWSLSQHTI---NYGV-----VRDRKEKDKKLGDGSVIPVKSEH 649
Query: 510 EVFDFLGFPWLEPHERN 526
+VF L + P ERN
Sbjct: 650 DVFALLALKYRPPWERN 666
>gi|13992551|emb|CAC38040.1| DNA polymerase mu [Mus musculus]
Length = 496
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRADSVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 339
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 400 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 439
+ ++ R L S H+ S +D + F + P +
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|426356073|ref|XP_004045416.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Gorilla
gorilla gorilla]
Length = 494
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 171/351 (48%), Gaps = 33/351 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----REDLIFSTHSEEGTDSGVDTY------F 427
+I HP G L + +++L++ + + + + + S +D + F
Sbjct: 333 FLITHPKEGQEAGLLPRVMRRLQDQGLILYHQHQHSCWESPTRLAQQSHMDAFERSFCIF 392
Query: 428 GLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 475
L PG + R+D V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAMRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|340904946|gb|EGS17314.1| DNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 626
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/493 (24%), Positives = 212/493 (43%), Gaps = 49/493 (9%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
V+R W +S++ G+ + Y + EG + Q + SS+ K+ +
Sbjct: 139 VVRLAWFTESIKAGKVLPTRDYLLY---EGRKLRAAPAKQREKTSPASSEKSVEVMKRAR 195
Query: 134 SSTE--DVEHFQAES----KGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--SSHH 185
+ E E F+ S +G+ ++ + P + S + PD+ +++
Sbjct: 196 ADAEFSPGEGFRPPSSQGRRGETYSSHPVKRPPLVRQTTSEHEIDTQLPPIPDYLHTTYS 255
Query: 186 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 245
P+ + NPP N++ + K+ +G+ +Y AI I P+ ++A +V
Sbjct: 256 CQRPTPV-NPP--NESFIKELEKIKTARTLMGDRIGVRAYSSAIATIAAYPYAFKTAQEV 312
Query: 246 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 305
LPG G + QE TG++++ + + ++ + LF E+WG+G TA+ Y +G
Sbjct: 313 ARLPGCGAKIAQLFQEFKDTGQIAEANEDDSNPRLAVLKLFYEIWGVGETTARSFYNRGW 372
Query: 306 RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 363
R LDD+ DSLT Q++G+KY+D+ K IPR EVE++ + + + P ++
Sbjct: 373 RDLDDIVEYGWDSLTRVQQIGVKYYDEFKQGIPREEVERIANTILEHANALHPGFEMVIV 432
Query: 364 GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------ 417
G YRRGK GD+DVV+ H D + F+ + + +L+E ++ L ST + E
Sbjct: 433 GGYRRGKLKSGDVDVVLSHRDENATHNFVERIIVRLEEAGYITHTLTLSTANSERGQIPV 492
Query: 418 --------GTDSGVDT-----------YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
G +G DT + R+D + P ++ W
Sbjct: 493 NWKGDDRRGAGTGFDTLDKALVVWQDPVWTTGEKKNPNPHRRVDIIISPWKTVGCAVLGW 552
Query: 459 TGNDVLNRRLRLLAE-SKGYRLDDTGLFPATYGS-----GGKQGVRARTSLKFDTEKEVF 512
+ R LR + + + D +G+ GS G G A L EK VF
Sbjct: 553 SSGTTFQRDLRRYCKRERALKFDSSGIRSRVDGSWVDLESGPNGEPAPDMLT--AEKRVF 610
Query: 513 DFLGFPWLEPHER 525
+ LG W P ER
Sbjct: 611 EGLGLVWRPPEER 623
>gi|33440487|gb|AAH56213.1| Polymerase (DNA directed), mu [Mus musculus]
Length = 496
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 339
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGPLPKVMSCL 354
Query: 400 KEM------KFLREDLIFSTHSEEGTDSGVDTY---FGLCTYPGRELRH----------- 439
+ ++ R L S H+ S +D + F + P +
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|395508711|ref|XP_003758653.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Sarcophilus
harrisii]
Length = 530
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 168/355 (47%), Gaps = 39/355 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N TE L G + R S+ +A V++ LP I S Q++GLP G
Sbjct: 187 NLCFTEALDTLAEAAGFEGSEGRFLSFRRAASVLKALPGPITSISQLRGLPHFGDHSSRI 246
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SL 317
+QE++ G S++E ++ E+ +T+ LF ++G+G TA K Y G R+L DL+ + L
Sbjct: 247 VQELLECGVSSEVERIKQSERYQTMKLFTHIFGVGVKTADKWYRDGLRSLADLQGQTRKL 306
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
+ Q G+ +F+D+ T + RHE E ++R+++KA +VLP + G +RRGK D+D
Sbjct: 307 SRQQEAGICHFEDLNTLVWRHEAEAIQRVVEKAVRQVLPGATVTLTGGFRRGKLQGHDVD 366
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD-----SGVDTY---FGL 429
+I HP +G L K + L+ F+ S H ++ D S D Y F +
Sbjct: 367 FLITHPVEGQEEGLLPKVMDLLESQGFVLYRHTQSNHYQDLKDPAQSTSLFDAYERCFSI 426
Query: 430 CTYP-----------------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
P G+ + R+D V P +AF L+ WTG+ R LR +
Sbjct: 427 LRLPDPTAAFRPEAGEEPCRDGKAV--RVDLVVAPASQFAFALLGWTGSQHFERELRRFS 484
Query: 473 ES-KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ K L+ GL Y G K+ S +E+++F LG ++ P RN
Sbjct: 485 RAEKQLLLNSHGL----YVPGKKE------SFPAASEEDIFRHLGLEYIAPEYRN 529
>gi|332865053|ref|XP_001142835.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 4 [Pan
troglodytes]
Length = 494
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 171/351 (48%), Gaps = 33/351 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----REDLIFSTHSEEGTDSGVDTY------F 427
+I HP G L + + +L++ + + + + + S +D + F
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCWESPTRLAQQSHMDAFERSFCIF 392
Query: 428 GLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 475
L PG + R+D V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|170098384|ref|XP_001880411.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644849|gb|EDR09098.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 527
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 133/505 (26%), Positives = 216/505 (42%), Gaps = 92/505 (18%)
Query: 64 MDLEALLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 123
+D E Q++++ QWL DS + G+ +S Y LS+I +
Sbjct: 70 IDWEIAKQKAIVTPQWLRDSAQAGKAISFQDYA-------------ALSEINNSNIIHDS 116
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSS 183
E+ R S + F S L E P + + + ASP
Sbjct: 117 PENQSRASQFLSRPSFQLFNPSS--------LEEEPTNERVKANWRLRYACKRASPLVCK 168
Query: 184 HH--ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES 241
+ + + +LY +L G + + Y +AI VI+ P I
Sbjct: 169 NQPLLVELGVLYRARELE-----------------GLEVNALGYERAIAVIKSYPNLIAH 211
Query: 242 AD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
+ + LP +G+ M I+E +TTG++ + E ++ +++S F V+G+GPATA+
Sbjct: 212 ENFETDIVHLPFLGEKMLFKIREYLTTGRIQESETTRASQRFQSLSAFSSVYGVGPATAR 271
Query: 299 KLYEKGHRTLDDLK--------------NEDSLTH-----------SQRLGLKYFDDIKT 333
KLY+ G RT+DD+K +S+T+ S ++GL ++D++T
Sbjct: 272 KLYDDGLRTIDDMKRYYDVQEDTEVPQLGANSVTNDLIRKDQIPNLSTKVGLALYEDLET 331
Query: 334 RIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS 393
IPR EVEQ+ L+ + ++PE I G YRRGK C D+D+VI P+ +S +
Sbjct: 332 PIPRSEVEQIHDLVMQEARYLMPECISTVVGGYRRGKPYCNDVDIVIGCPNIQSGGNQVK 391
Query: 394 KYVKKLKEMKFLREDLIFSTHSEEGTDSGVD--------TYFGLCTYPGRELRH-RIDFK 444
+KL + + R L S + + G T F L + H R+D
Sbjct: 392 ALGEKLIKRLYDRGVLCLSGFHAQDSVRGAHLNLLEKAMTIFALPKNAVHQRVHRRLDLI 451
Query: 445 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSL 503
+ Y +I WTG+ + R LRL A+ + G + D +GL R S
Sbjct: 452 FAAPETYWTAIIGWTGSKMFERDLRLWAKVEMGMKFDSSGL------------TRRYDSK 499
Query: 504 KF--DTEKEVFDFLGFPWLEPHERN 526
F +E+ VF+ LG W++P RN
Sbjct: 500 LFMPSSERHVFEILGLDWIDPTMRN 524
>gi|397467153|ref|XP_003805291.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Pan
paniscus]
gi|410253858|gb|JAA14896.1| polymerase (DNA directed), mu [Pan troglodytes]
gi|410301512|gb|JAA29356.1| polymerase (DNA directed), mu [Pan troglodytes]
Length = 494
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 171/351 (48%), Gaps = 33/351 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----REDLIFSTHSEEGTDSGVDTY------F 427
+I HP G L + + +L++ + + + + + S +D + F
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCWESPTRLAQQSHMDAFERSFCIF 392
Query: 428 GLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 475
L PG + R+D V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|451927347|gb|AGF85225.1| polymerase family X [Moumouvirus goulette]
Length = 357
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 37/315 (11%)
Query: 231 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 287
++++L F+I + G+ GIG S + I EI+ TGKLS+L++ +K ++ +I
Sbjct: 48 ILKRLDFEITDPSDLDGIRGIGPSTKRRIAEILETGKLSELKNKYDKKKQSQINSIQELE 107
Query: 288 EVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVE 341
EV GIG +TA+KL K G R++D+LK N+ +++++ LGLKY+ +K IPR E+
Sbjct: 108 EVIGIGSSTAKKLITKHGIRSVDELKKAIKLNKITVSNAILLGLKYYGIVKGNIPRKEIV 167
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH-----------PDRKSHKG 390
Q+E+ L +E+ ++ ++ GSYRRGKA+ GD+DV++ H P++ +
Sbjct: 168 QIEKYLVSQAKEINDDLELIICGSYRRGKATSGDIDVLMYHRAMKTTKEILNPEKYDLEP 227
Query: 391 FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDI 450
+ YV +L FL + + TD+ Y G C Y +R RID + P
Sbjct: 228 YFEMYVGQLTSTGFLLDHM---------TDASTKKYMGFCKYKSYPVR-RIDIRFVPYQS 277
Query: 451 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 510
++ +TG LN +R A+ + L++ GL+ + G++ T +K +E +
Sbjct: 278 LPSAMLYFTGPYELNTIMRSSAKKRKMILNEYGLYKV-----DENGIKIPTKIK--SESD 330
Query: 511 VFDFLGFPWLEPHER 525
+F+ LG +L P ER
Sbjct: 331 IFNALGMDYLTPEER 345
>gi|320163731|gb|EFW40630.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 132/238 (55%), Gaps = 16/238 (6%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
P + NK +T+IF L YRA + R+ Y KAI ++ IES + LP +G+
Sbjct: 567 QPINHNKQVTDIFEMLEGDYRAQKDTWRAMGYQKAITALKHHHKPIESFAEALALPNVGE 626
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ + EIV+TG L +L+ ++D +++ I +V+G+GP TAQKLY KG ++D L+
Sbjct: 627 RLAKKVWEIVSTGHLRRLD--DRDPRLKVILEMSQVYGVGPTTAQKLYAKGIHSMDQLRA 684
Query: 314 EDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
+ S L ++G+K++DD+ +IPR EV + + V++ GSYRRGK +
Sbjct: 685 QASQLPPIMQIGVKHYDDLLKKIPRAEVYHFAKQINSG-------VLVAICGSYRRGKDT 737
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
CGD+D+++ HPD ++H ++ + L+ D + + H EG D Y G+C
Sbjct: 738 CGDVDILLSHPDGRAHTDIYNRLI------PILKRDGLLTDHLSEGHDGTQHKYMGIC 789
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
P RID P + L+ +TG+ NR +RLLA + L L +
Sbjct: 884 PFTNFHRRIDLIAVPLKEWGTALLYFTGSGYFNRSMRLLARKRHMSLSQHSL------NV 937
Query: 493 GKQGVRART-----SLKFDTEKEVFDFLGFPWLEPHERNL 527
G + +RA L TE VF+ LG P+L PHERN+
Sbjct: 938 GVKRLRAEKLTEGEPLLTPTEHSVFEALGLPYLAPHERNV 977
>gi|448825563|ref|YP_007418494.1| putative DNA polymerase family X protein [Megavirus lba]
gi|444236748|gb|AGD92518.1| putative DNA polymerase family X protein [Megavirus lba]
Length = 357
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 163/315 (51%), Gaps = 37/315 (11%)
Query: 231 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 287
+I+ + F+I + G+ GIG + I EI+ TGKLS+L++ +K EK+ +I
Sbjct: 48 IIKNIDFEITDPSDLNGIQGIGDGTKRRIAEILETGKLSELKNKYDKKKQEKINSIQELE 107
Query: 288 EVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTRIPRHEVE 341
V GIG +TA+KL K G ++ +LK E ++++ LGLKY+ ++ IPR E++
Sbjct: 108 RVIGIGSSTAKKLITKYGITSVKELKKAIKSGEVEVSNAILLGLKYYGIVEGNIPRKEID 167
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK------- 394
Q+E+ L+K E++ ++ I+ GSYRRGKA+ GD+DV+I HP K+ K L+
Sbjct: 168 QVEKYLEKQAEKINEDLEIMICGSYRRGKATSGDIDVLIYHPGMKTTKEMLNPEKYNLEP 227
Query: 395 ----YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDI 450
++ L + FL + + TD Y G C Y +R RID + P
Sbjct: 228 YFEIFISNLTKNGFLLDHM---------TDGSNKKYMGFCKYKSNPVR-RIDVRFIPYQS 277
Query: 451 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 510
++ +TG LN +R A+ + L++ GL+ +T +K +E +
Sbjct: 278 LPSAMLYFTGPYELNTIMRSSAKKRKMILNEYGLYKV-------DANEIKTPVKIKSEAD 330
Query: 511 VFDFLGFPWLEPHER 525
+F+ LG +L P ER
Sbjct: 331 IFNALGMDYLTPQER 345
>gi|363539795|ref|YP_004894637.1| mg586 gene product [Megavirus chiliensis]
gi|350610960|gb|AEQ32404.1| putative DNA polymerase family X protein [Megavirus chiliensis]
gi|371943935|gb|AEX61763.1| putative DNA polymerase family X [Megavirus courdo7]
gi|425701498|gb|AFX92660.1| putative DNA polymerase family X protein [Megavirus courdo11]
Length = 357
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 163/315 (51%), Gaps = 37/315 (11%)
Query: 231 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 287
+I+ + F+I + G+ GIG + I EI+ TGKLS+L++ +K EK+ +I
Sbjct: 48 IIKNIDFEITDPSDLNGIQGIGDGTKRRIAEILETGKLSELKNKYDKKKQEKINSIQELE 107
Query: 288 EVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTRIPRHEVE 341
V GIG +TA+KL K G ++ +LK E ++++ LGLKY+ ++ IPR E++
Sbjct: 108 RVIGIGSSTAKKLITKYGITSVKELKKAIKSGEVEVSNAILLGLKYYGIVEGNIPRKEID 167
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK------- 394
Q+E+ L+K E++ ++ I+ GSYRRGKA+ GD+DV+I HP K+ K L+
Sbjct: 168 QVEKYLEKQAEKINEDLEIMICGSYRRGKATSGDIDVLIYHPGMKTTKEMLNPEKYDLEP 227
Query: 395 ----YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDI 450
++ L + FL + + TD Y G C Y +R RID + P
Sbjct: 228 YFEIFISNLTKNGFLLDHM---------TDGSNKKYMGFCKYKSNPVR-RIDVRFIPYQS 277
Query: 451 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 510
++ +TG LN +R A+ + L++ GL+ +T +K +E +
Sbjct: 278 LPSAMLYFTGPYELNTIMRSSAKKRKMILNEYGLYKV-------DANEIKTPVKIKSEAD 330
Query: 511 VFDFLGFPWLEPHER 525
+F+ LG +L P ER
Sbjct: 331 IFNALGMDYLTPQER 345
>gi|20067691|emb|CAD29087.1| chimeric DNA-directed DNA polymerase bf4-13 [synthetic construct]
Length = 326
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 181/342 (52%), Gaps = 40/342 (11%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 369
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ D+D++I+ P++K L K+V L ++F+ + L G + G+
Sbjct: 189 EKMLNDVDLLIIVPEKK-----LLKHV--LPNIRFITDTL----------SKGETKFMGV 231
Query: 430 CTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
C P E H RID ++ P + + + +TG ++ +R+ A KG+ +++ +
Sbjct: 232 CQLPSENDENEYPHRRIDIRLIPAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTI 289
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 290 RPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 325
>gi|395323714|gb|EJF56174.1| Nucleotidyltransferase [Dichomitus squalens LYAD-421 SS1]
Length = 573
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 163/359 (45%), Gaps = 61/359 (16%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
GEDR + SY +A VI+ P KI S QV LP IG + I++ + TG + + E +
Sbjct: 224 GEDRSALSYERAASVIKAYPHKIRSLAQVVKLPFIGTKIGGLIEQYLNTGTILEAETIKG 283
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK------------------------ 312
E+ +T+SLF ++GIGP+TA++LY RTL+DL+
Sbjct: 284 SERFQTLSLFASIYGIGPSTARRLYHLNLRTLEDLEIYYGVERDDVGRQGQIVEVEEKPQ 343
Query: 313 ----------NEDSLTHSQ-RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 361
+D L S R+ L +D+ RIPR EVE+M R++ + P +
Sbjct: 344 HPRWMRGQRAADDGLGDSWIRVALGLREDLAKRIPRAEVEEMGRVVITELNNLEPGCVST 403
Query: 362 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI----FSTHSE- 416
G YRRGK D+D+V HPD KG V++L E L F TH
Sbjct: 404 IVGGYRRGKRESNDVDIVFTHPDASKVKGLCKSLVRRLHERVSLLTSFTDLSGFHTHDPL 463
Query: 417 -----EGTDSGVDTYFGLCTYPGRE-LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
+ + + + T P + R R+D ++Y +I WTG+ + R +R
Sbjct: 464 RLHHWDNLEKALTVFILPPTSPFYDGTRRRLDLIFALPEVYWTAVIGWTGSIMFQRDIRQ 523
Query: 471 LAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHERN 526
A+ K G + D +G+ R S +F TEKEVF+ LG W++P RN
Sbjct: 524 WAKDKLGMKFDSSGI------------TRRYDSKEFYPKTEKEVFELLGLQWVDPTWRN 570
>gi|392560797|gb|EIW53979.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 601
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 172/374 (45%), Gaps = 72/374 (19%)
Query: 209 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 267
+I RAL GEDR + SY +AI VI+ P +I S QV+ LP IG + + E + G
Sbjct: 241 IIRQSRALEGEDRSALSYQRAISVIKAYPERIRSLKQVQKLPYIGVKISGLVDEFLDNGH 300
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK----NEDSLTHSQ-- 321
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+L DL+ E S + +Q
Sbjct: 301 ISEAQTIKSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLADLEIYYGVEPSSSPTQPS 360
Query: 322 ------------------------------------RLGLKYFDDIKTRIPRHEVEQMER 345
R+ L +D+ IPR EVE++ R
Sbjct: 361 QIVEVEPEKSRQAGWKGPGKDKDKGGQDEGLGESWIRVALGLREDLSKMIPRDEVEEIGR 420
Query: 346 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--- 402
++ + + + P + G YRRGK D+D+V HPD KG ++VK L E
Sbjct: 421 VVMRELDALEPGCVSTIVGGYRRGKTESNDVDIVFTHPDAGKVKGLCKRFVKHLHERGMV 480
Query: 403 -------KFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGL 455
F D + +TH + S T F L +R R+D P ++Y +
Sbjct: 481 THVMHLSSFHAHDPLRTTHWDTLEKSL--TVFVLPR--AGAVRRRLDLIFAPPEVYWTAV 536
Query: 456 IAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFD--TEKEVF 512
+ W+G+ + R LR A+ + G + D +G+ R S +F TEKEVF
Sbjct: 537 VGWSGSIMFQRDLRQWAKDRCGMKFDSSGI------------TRRYDSKEFHPRTEKEVF 584
Query: 513 DFLGFPWLEPHERN 526
+ LG W++P RN
Sbjct: 585 ELLGLEWVDPVWRN 598
>gi|147899762|ref|NP_001079251.1| DNA nucleotidylexotransferase [Xenopus laevis]
gi|1174629|sp|P42118.1|TDT_XENLA RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|494987|gb|AAA18493.1| terminal deoxynucleotidyl transferase [Xenopus laevis]
Length = 507
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 172/358 (48%), Gaps = 38/358 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 159 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 218
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 315
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 219 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 278
Query: 316 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 279 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 338
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR-EDLIFSTHSEEGTDS----GVDTY--- 426
D+D++I + K L + LK L ++I ST E S +D +
Sbjct: 339 DVDILITCARKGKEKNILHNTMSVLKNRGLLLFYNIIESTFDETKLPSRHVDALDHFQKC 398
Query: 427 FGLCTYPGREL-----------------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
F + P R++ R+D + P + Y + L+ WTG+ R LR
Sbjct: 399 FTILKLPKRQMDIGNIIDPHECERKNWKAVRLDLVITPYEQYPYALLGWTGSRQFERDLR 458
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A K LD+ GL+ T + LK + E+++F LG +LEP ERN
Sbjct: 459 RYATHEKRMMLDNHGLYDKTKNN----------FLKANNEEDIFKQLGLDYLEPWERN 506
>gi|46110028|ref|XP_382072.1| hypothetical protein FG01896.1 [Gibberella zeae PH-1]
Length = 594
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 169/357 (47%), Gaps = 29/357 (8%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 252
NPP NK ++ ++ I R LGED +Y +I + P+ ++++ +V LPG G
Sbjct: 239 NPP--NKAFVKLLTEIRTI-RQLGEDDVGVRAYSTSIASVAAYPYPLKNSQEVARLPGCG 295
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+ + TG+ +++ D ++ + +F ++WG+G ATA++ Y+KG R L DL
Sbjct: 296 DRIAELWHRWKETGESAEVREANADPRISVLKIFYDIWGVGAATAREFYQKGWRDLVDLV 355
Query: 313 NE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 370
++L+ SQ++G+KY+D+ + IPR EV + + K + P ++ G +RRGK
Sbjct: 356 EHGWNTLSRSQQIGVKYYDEFLSGIPRDEVASIGAAILKHARIIDPGFEMVIVGGHRRGK 415
Query: 371 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------G 418
GD+DVV+ H D +SK V L++ + L+ S H+ E
Sbjct: 416 QKSGDVDVVLSHRDESKTLHVISKIVVILEQAHLVTHTLVLSAHNSERGQRPVSWKGQTS 475
Query: 419 TDSGVDTY-FGLCTY--PGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
+ SG DT L + P +E R+D + P ++ W+G R LR +
Sbjct: 476 SSSGFDTLDKALVVWKDPSKEDAPHRRVDIIISPWKTVGCAVLGWSGGTTFQRDLRQYCK 535
Query: 474 -SKGYRLDDTGLFPATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KGY+ D +G+ G G A ++ E+ VF LG PW P R
Sbjct: 536 YVKGYKFDSSGIRHRADGRWVDLEGTSADNAAPDME-TAERRVFGGLGLPWRPPEAR 591
>gi|111226476|ref|XP_001134542.1| DNA polymerase beta [Dictyostelium discoideum AX4]
gi|90970597|gb|EAS66859.1| DNA polymerase beta [Dictyostelium discoideum AX4]
Length = 509
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 143/262 (54%), Gaps = 18/262 (6%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ +T+I +L + G + +Y KA I P +I S + + L G+GK +
Sbjct: 57 NQKLTDIITELSIFEKNKGLQHKYSAYRKAAQSIRAHPKEITSGIEAQKLDGVGKKIAKK 116
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 317
IQEI+ TG+L KL + KDE + +I +V GIGP AQK Y++G +++ DL K +D L
Sbjct: 117 IQEIIDTGELKKLNNQLKDETLTSIGEISKVSGIGPKAAQKFYDEGIKSIKDLWKIKDRL 176
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
TH Q++GLKYF++I+ ++PR+E+EQ E L+++A ++ ++I GSYRRG S GD+D
Sbjct: 177 THHQQIGLKYFNEIEQKVPRNEIEQFEELVRQALLKIDKKIIYETCGSYRRGLPSSGDVD 236
Query: 378 VVIMHP-------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
+++ HP D+K + K V LK+ + +DL G Y G+C
Sbjct: 237 ILLSHPNYTLKMKDKKETFHIVEKLVDSLKKSGIIIDDLSL----------GPFKYMGIC 286
Query: 431 TYPGRELRHRIDFKVYPRDIYA 452
P ID K D Y+
Sbjct: 287 KLPSNIKLDNIDCKKEKNDHYS 308
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 496
+ RIDFK+ P + Y FGL+ TG+D NR++R +A SKGY L + + + SG
Sbjct: 424 IARRIDFKLIPIESYYFGLLHNTGSDEFNRQMRAIALSKGYTLSEYSINKFSKESGKDDQ 483
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ + ++E+E+F +G + P ER L
Sbjct: 484 I-----IPVNSEEEIFKIIGMKYYPPQERKL 509
>gi|310790620|gb|EFQ26153.1| hypothetical protein GLRG_01297 [Glomerella graminicola M1.001]
Length = 602
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 163/354 (46%), Gaps = 40/354 (11%)
Query: 208 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 266
K I R L D +Y +I I P+ I +V LPG G + + E G
Sbjct: 250 KKIRTARKLAGDHIGVRAYSTSIATISAYPYVIAIRQEVARLPGCGVKIAELWHEWEKAG 309
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLG 324
+L + + + D K+ I F ++WG+G TA+ Y +G R LDD+ DSL+ Q++G
Sbjct: 310 RLREADEAQADSKLSVIQTFYDIWGVGDTTARDFYSRGWRDLDDVVEHGWDSLSRVQQIG 369
Query: 325 LKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+KY+D+ K +IPR EV + + +L A + L +++ GG YRRGK GD+DVVI HP
Sbjct: 370 VKYYDEFKLKIPRTEVRDIADTILAHARKINLGFQLVIVGG-YRRGKQGSGDVDVVISHP 428
Query: 384 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS------------EEGTDSGVDTY----- 426
D + + K V L++ + + L+ S H+ E SG DT
Sbjct: 429 DESATMHIVEKLVVSLEKSQHITHSLMLSNHNSERRQRPVSWKGNESIGSGFDTLDKALV 488
Query: 427 --------FGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKG 476
C+ E H R+D + P ++ W+G+ R LR + KG
Sbjct: 489 VWQKPETKTKACSSEAEERTHRRVDIVISPWKTAGCAILGWSGDMTFQRDLRRYCRKQKG 548
Query: 477 YRLDDTGLFPATYGS-----GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ GS GGK G + E+ VF+ LG ++ P +R
Sbjct: 549 FKFDSSGIRSRQDGSWIDLEGGKLG---KAPDMLTAERRVFEGLGLDYIPPEDR 599
>gi|125858157|gb|AAI29712.1| Dntt-A protein [Xenopus laevis]
Length = 500
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 172/358 (48%), Gaps = 38/358 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 152 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 211
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 315
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 212 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 271
Query: 316 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 272 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 331
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR-EDLIFSTHSEEGTDS----GVDTY--- 426
D+D++I + K L + LK L ++I ST E S +D +
Sbjct: 332 DVDILITCARKGKEKNILHNTMSVLKNRGLLLFYNIIESTFDETKLPSRHVDALDHFQKC 391
Query: 427 FGLCTYPGREL-----------------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
F + P R++ R+D + P + Y + L+ WTG+ R LR
Sbjct: 392 FTILKLPKRQMDIGNIIDPHECERKNWKAVRLDLVITPYEQYPYALLGWTGSRQFERDLR 451
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A K LD+ GL+ T + LK + E+++F LG +LEP ERN
Sbjct: 452 RYATHEKRMMLDNHGLYDKTKNN----------FLKANNEEDIFKQLGLDYLEPWERN 499
>gi|7019493|ref|NP_037416.1| DNA-directed DNA/RNA polymerase mu [Homo sapiens]
gi|17366980|sp|Q9NP87.1|DPOLM_HUMAN RecName: Full=DNA-directed DNA/RNA polymerase mu; Short=Pol Mu;
AltName: Full=Terminal transferase
gi|6715109|gb|AAF26284.1|AF176097_1 DNA polymerase mu [Homo sapiens]
gi|6822168|emb|CAB65075.2| DNA polymerase mu [Homo sapiens]
gi|58102203|gb|AAW65376.1| polymerase (DNA directed), mu [Homo sapiens]
gi|119581526|gb|EAW61122.1| polymerase (DNA directed), mu, isoform CRA_c [Homo sapiens]
gi|119581527|gb|EAW61123.1| polymerase (DNA directed), mu, isoform CRA_c [Homo sapiens]
Length = 494
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 169/351 (48%), Gaps = 33/351 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----REDLIFSTHSEEGTDSGVDTY------F 427
+I HP G L + + +L++ + + + + S +D + F
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCCESPTRLAQQSHMDAFERSFCIF 392
Query: 428 GLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 475
L PG + R+D V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|196013715|ref|XP_002116718.1| hypothetical protein TRIADDRAFT_60774 [Trichoplax adhaerens]
gi|190580696|gb|EDV20777.1| hypothetical protein TRIADDRAFT_60774 [Trichoplax adhaerens]
Length = 525
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 131/549 (23%), Positives = 235/549 (42%), Gaps = 88/549 (16%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQSVIRY 77
IF + V++V + N+R+Q +Q + G + E S KVTH++
Sbjct: 24 IFHDICVYIVPIKLPNQRVQFLKQLAAKKGFPIAESYSPKVTHIVT-------------- 69
Query: 78 QWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGE----SSHRKKIK 133
+ RIK + ENI + ++ + +DG+ + + +
Sbjct: 70 ------------AVTSIDRIKAHLDSENINKVEVVSVEWLTTSFTDGQPTRVTDRFRLVP 117
Query: 134 SSTEDVEHFQA-ESKGDVETNA-LSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSL 191
+ +E F A + + +E N LS+ SS LT + D + + +
Sbjct: 118 KKSLSLERFSAFDRQASLENNTQLSDGSADGESSLQLTKYECQRVTTLDHYNRKLVEALE 177
Query: 192 LYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 251
L E LI ++ G R+ ++ ++ ++ LP +IE+ D++ L +
Sbjct: 178 LL----------ESHALLIGGEQSQG---RALAFKRSSTAMKGLPKEIENVDEISSLRHL 224
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
G I EI+T G ++E E + LF ++G+GP TA+ Y+KG RT DDL
Sbjct: 225 GNHSLRIIGEILTKGYSDEVEQIRNSEFYKATKLFNNIFGVGPTTARYWYDKGLRTFDDL 284
Query: 312 KNED--SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
+N + LT Q+ GL +D++ + + +++ ++Q + +LP + G +RRG
Sbjct: 285 RNSEIIKLTDRQQSGLDNYDELCEPVTLEQAQRIRDMVQNEIDIILPGTKSMLVGGHRRG 344
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR------------EDLIFSTHSEE 417
K + D D++I HP+ +G L+K V +L+ +++ E + T+S
Sbjct: 345 KKAGHDTDILIWHPEEGKERGLLTKLVDRLELKGYIKYKEMINIDANTDEAFLRRTNSRG 404
Query: 418 GTD---------SGVDTYFGLCTYPGRELR-----------HRIDFKVYPRDIYAFGLIA 457
+D ++ FG+ ++P L+ R+D V P +A+ L+
Sbjct: 405 LSDIKEKPGKAMDHLERCFGIFSFPRTLLQLPQNDDNPSAARRVDLIVTPASQWAYALVG 464
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
WTGN NR LRL A + S R + L TE+++F++L
Sbjct: 465 WTGNKQYNRSLRLYAWKE---------LQINLSSHAAFDCREQKLLPASTEQDIFNYLKL 515
Query: 518 PWLEPHERN 526
+ EP ERN
Sbjct: 516 TYREPWERN 524
>gi|351697151|gb|EHB00070.1| DNA polymerase mu [Heterocephalus glaber]
Length = 493
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/422 (24%), Positives = 181/422 (42%), Gaps = 58/422 (13%)
Query: 151 ETNALSEAPNSPMSS----ESLTNTLSTASASPDFSSHHITDPSLLYNPPDL-------- 198
+ N + P P + T +++ P H + + L PP+
Sbjct: 83 QENEAAPPPGCPRPALLDISWFTESMAAGQPVPVEGRHRLEEAELRKGPPNPAAMPAYAC 142
Query: 199 ---------NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 249
N +++E L G + R S+ +A V+ LP+ + Q++GLP
Sbjct: 143 QRSTPLMHHNSSLSEALETLAEAAGFEGSEGRLLSFCRAASVLRALPWPVTVLSQLQGLP 202
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 309
G+ +QE++ G +++ E+ RT+ LF +V+G+G TA + Y++G RTLD
Sbjct: 203 NFGEHSSRIVQELLERGVCEEVKRVRSSERYRTMKLFTQVFGVGVKTANRWYQEGLRTLD 262
Query: 310 DLKNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
+L+ + LT QR GL++ D+ T + R + E ++RL++ + LP ++ G +RR
Sbjct: 263 ELREQPQRLTRQQRAGLQHHRDLCTPVGRPDAEALQRLVEATVGQALPGATVMLTGGFRR 322
Query: 369 GKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEEGTDSG 422
GK D+D +I HP+ G L V +L+ + R L H + +
Sbjct: 323 GKLQGHDVDFLITHPEEGREVGLLPSVVCQLQSQGLVLYHQHQRSHLGDPDHLARQSHTM 382
Query: 423 VDTYFGLCTY-----------------PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN 465
LC P R +R +D V P + F L+ WTG+ +
Sbjct: 383 DAFERSLCILRLLQPSQPAKGADSEPRPWRAVR--VDLVVAPWSQFPFALLGWTGSKLFE 440
Query: 466 RRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
R LR + + KG L+ GLF ++ +E+++F LG +L P +
Sbjct: 441 RDLRRFSRKEKGLCLNSHGLF----------DPEQKSCFHVASEEDIFRHLGLAYLPPEQ 490
Query: 525 RN 526
RN
Sbjct: 491 RN 492
>gi|20067695|emb|CAD29089.1| chimeric DNA-directed DNA polymerase bf4-16 [synthetic construct]
Length = 334
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 177/347 (51%), Gaps = 42/347 (12%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQ---MERLLQKAGEEVLPEVI------ILCGGSY 366
L H QR+GLKYF+D + RIPR ++ + L + E ++I I+ GS+
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRELIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSF 190
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
RRG S GD+DV++ HP+ F S+ K+ K + + E L G+
Sbjct: 191 RRGAESSGDMDVLLTHPN------FTSESSKQPKLLHRVVEQLRIK---------GLSFS 235
Query: 427 FGLCTYPGRELRHRIDFKVYPRDIYA-------FGLIAWTGNDVLNRRLRLLAESKGYRL 479
+C L + K Y D++ + + +TG R+R + G+ +
Sbjct: 236 VKVCGERKCVLFIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIR---AALGFTI 292
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
++ + P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 293 NEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 333
>gi|392560791|gb|EIW53973.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 597
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 169/375 (45%), Gaps = 73/375 (19%)
Query: 209 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 267
+I RAL GEDR + SY +AI VI+ P KI S QV+ LP IG + + E + G
Sbjct: 236 IIRQSRALEGEDRSALSYQRAISVIKAYPEKIRSLKQVQKLPYIGVKISGLVDEYLDNGH 295
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ------ 321
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+L DL+ + SQ
Sbjct: 296 ISEAQTIQSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLADLEIYYGVERSQVQQSQI 355
Query: 322 -------------------------------RLGLKYFDDIKTRIPRHEVEQMERLLQKA 350
R+ L +D+ IPR EVE++ R++ +
Sbjct: 356 IEVEEKPRQAGWKGRDKKDKGDEEGLGDSWIRVALGLREDLSKMIPRDEVEEIGRVVMRE 415
Query: 351 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM-------- 402
+ + P + G YRRGK D+D+V HPD KG ++VK L
Sbjct: 416 LDALEPGCVSTIVGGYRRGKPKSNDVDIVFTHPDAGKVKGLCKRFVKHLHGRGMVTHVMH 475
Query: 403 --KFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGREL------RHRIDFKVYPRDIYAFG 454
F D + +TH + S T F L P L R R+D P ++Y
Sbjct: 476 LSSFHAHDPLRTTHWDTLEKSL--TVFVL--PPSSALNSSVPVRRRVDLIFAPPEVYWTA 531
Query: 455 LIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEV 511
++ W+G+ + R LR A+ + G + D +G+ R S +F TEKE
Sbjct: 532 VVGWSGSIMFQRDLRQWAKDRCGMKFDSSGI------------TRRYDSKEFHPKTEKEA 579
Query: 512 FDFLGFPWLEPHERN 526
F+ LG W++P RN
Sbjct: 580 FELLGLEWVDPVWRN 594
>gi|110645438|gb|AAI18907.1| Unknown (protein for IMAGE:7690143) [Xenopus (Silurana) tropicalis]
Length = 538
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 167/356 (46%), Gaps = 38/356 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 192 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 251
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 252 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 311
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL ++ D++ + R E +E+L++ A + +PEV + G +RRGK D+D
Sbjct: 312 TAEQKAGLLHYTDLQQSVTREEAGTVEQLVKGALQSFVPEVRVTMTGGFRRGKQEGHDVD 371
Query: 378 VVIMHPDRKSHKGFLSKYVKKL-KEMKFLREDLIFSTHSEEGTDS--GVDTYFGLCTYPG 434
+I HPD K+ G L K V L + L + + + G+++ G +T + + P
Sbjct: 372 FLITHPDEKALNGLLRKAVAWLDSKGSVLYYHVRARSQNFSGSNTMDGHETCYSIIALPN 431
Query: 435 -------------------RELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
LR+ R+D V P Y + L+ WTG+ R LR
Sbjct: 432 VSPEKPSPDAEKIEPDLDKNSLRNWKAVRVDLVVCPYSEYFYALLGWTGSKHFERELRRF 491
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ K L+ GLF ++ + +E+E+F LG P++ P ERN
Sbjct: 492 SLHVKKMSLNSHGLF----------DIQKKCHHPATSEEEIFAHLGLPYVLPSERN 537
>gi|367036979|ref|XP_003648870.1| hypothetical protein THITE_2106802 [Thielavia terrestris NRRL 8126]
gi|346996131|gb|AEO62534.1| hypothetical protein THITE_2106802 [Thielavia terrestris NRRL 8126]
Length = 613
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 153/334 (45%), Gaps = 34/334 (10%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y AI I P+ I++A +V LPG G + QE TG++ + E D K+ +
Sbjct: 279 AYSSAIATIAAYPYTIQTAQEVARLPGCGSKIARLFQEFKDTGQIREAREDETDPKLAVL 338
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 341
LF +WG+ TA+ Y +G R LDD+ DSLT Q++G+KY+D+ +T+IPR EVE
Sbjct: 339 KLFYGIWGVAETTARDFYNRGWRDLDDIVEYGWDSLTRVQQIGVKYYDEFQTKIPRAEVE 398
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
+ + + + ++ G YRRGK GD+DVV+ HPD + F+ + V L+
Sbjct: 399 AIANTILEHANRIRQGFQMVIVGGYRRGKLESGDVDVVLSHPDEAATHNFVERIVVSLER 458
Query: 402 MKFLREDLIFST-HSEEG------------TDSGVDT------YFGLCTYPGRELRH--- 439
+++ L ST +SE G +G DT + + E R+
Sbjct: 459 GRYITHTLSLSTANSERGQAPVSWKGDNRKAGTGFDTLDKALVVWQDPVWTTGEARNPNP 518
Query: 440 --RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGS----- 491
R+D + P ++ WT R LR + + + D +G+ GS
Sbjct: 519 HRRVDIIISPWKTAGCAVLGWTSGTTFQRDLRRYCKKELSLKFDSSGVRSRKDGSWVDLE 578
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G G A L E+ VF LG W P ER
Sbjct: 579 SGPDGKPAPDMLT--AERRVFAGLGLQWRPPEER 610
>gi|342886891|gb|EGU86588.1| hypothetical protein FOXB_02917 [Fusarium oxysporum Fo5176]
Length = 584
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 130/492 (26%), Positives = 212/492 (43%), Gaps = 58/492 (11%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVL------SQIQGNGNTSSDGESS 127
V++ WL DS E + D Y I +RVL + + G+TS
Sbjct: 108 VVKLSWLLDSWEKEELLPVDHYLIFQ-------CNRVLPRETTPAPVLPKGSTSPASSIL 160
Query: 128 HRKKIKS---STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--S 182
R ++ ST Q + + DV T AP+ + ++ + T P+F +
Sbjct: 161 ERALLEQKAQSTSTSPSNQHKRRHDVSTTISQNAPS--LLHQTTSEHDITLPVMPEFLRT 218
Query: 183 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIES 241
++ P+ + NPP N+ I ++ I R L ED +Y +I I P+ +++
Sbjct: 219 TYSCQRPTYM-NPP--NEAFVNILTEIRTI-RQLREDEVGVRAYSTSIASIAAYPYALKN 274
Query: 242 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301
A +V LPG G + + TG+ ++ D K+ + LF +WG+G TA+ Y
Sbjct: 275 AQEVARLPGCGDRIAELWHYWKETGESVEVREANADPKITVLKLFYNIWGVGAVTARDFY 334
Query: 302 EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
KG R LDDL ++L+ SQ+LG+KY+++ IPR EV + + + + P
Sbjct: 335 RKGWRDLDDLVEFGWNTLSRSQQLGVKYYNEFLLGIPRDEVATIAAAILEHARLIDPGFE 394
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS---- 415
++ G YRRGK GD DVV+ H + +++ V L++ + + L STH+
Sbjct: 395 MVIVGGYRRGKQQSGDADVVLSHRNENKTLNVITQIVVALEKAQLITHTLTLSTHNSDRG 454
Query: 416 --------EEGTDSGVDTY-FGLCTYPGRELR----HRIDFKVYPRDIYAFGLIAWTGND 462
E+ SG DT L + + R+D + P ++ W+G
Sbjct: 455 QRPVSWKGEKSNSSGFDTLDKALVVWQDSSKKDAPHRRVDIIISPWKTVGCAVLGWSGGT 514
Query: 463 VLNRRLRLLAES-KGYRLDDTGLFPATYG--------SGGKQGVRARTSLKFDTEKEVFD 513
R +R + KGY+ D +G+ G SGG + T+ E+ VF
Sbjct: 515 TFQRDVRRYCKRVKGYKFDSSGIRHRADGRWVDLEGTSGGDEAPDMETA-----ERRVFA 569
Query: 514 FLGFPWLEPHER 525
LG W P ER
Sbjct: 570 GLGLQWRSPEER 581
>gi|345306445|ref|XP_001509890.2| PREDICTED: DNA polymerase beta-like [Ornithorhynchus anatinus]
Length = 386
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 125/204 (61%), Gaps = 8/204 (3%)
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
N+ RA+ + +Y KA VI K P KI+S + K L G+G + + I E ++TGKL K
Sbjct: 167 NVNRAI---HKYNAYRKAASVIAKYPNKIKSGAEAKKLDGVGAKIAEKIDEFLSTGKLRK 223
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 329
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KN+ L H QR+GLKYF+
Sbjct: 224 LEKIRQDDTGSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNDHKLNHHQRIGLKYFE 283
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
D + RIPR E+ QM+ ++ +++ P+ I GS+RRG S GD+D+++ HP S
Sbjct: 284 DFEKRIPREEMLQMQDIVLNEVKKLDPKYIATVCGSFRRGAESSGDMDILLTHPSFTSES 343
Query: 390 G----FLSKYVKKLKEMKFLREDL 409
L + V++L+++ F+ + L
Sbjct: 344 AKQPKLLHQVVEQLQKVHFITDTL 367
>gi|358400398|gb|EHK49729.1| hypothetical protein TRIATDRAFT_174080, partial [Trichoderma
atroviride IMI 206040]
Length = 607
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/524 (25%), Positives = 227/524 (43%), Gaps = 83/524 (15%)
Query: 60 HVLAMDLEALLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 119
+VL + + +L V++ WL DSL + D Y + L ++ SQ + +
Sbjct: 106 NVLRLQRDVVL---VLKLAWLLDSLEQDAALPVDDYLLYL-------GRKLPSQPKKDTT 155
Query: 120 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS- 178
+ S R+++K V AE + +S +P+SP ++ T++ ST S
Sbjct: 156 PKT---SPSRQRLKGRASAVLARAAEDQ-----QGISTSPHSPQAARRRTHSPSTPSGRK 207
Query: 179 ----------------------PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYR 214
PDF +++ PS + NPP N E + +
Sbjct: 208 RAEPPTLYRETTSEHDIPLPPIPDFLHTTYSCQRPSPV-NPP--NAAFIEELKDVRKLRL 264
Query: 215 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
G+ +Y +I + PF I+ +++ LPG G ++ +E + G ++ +
Sbjct: 265 LQGDKVGVRAYSTSIASLAAYPFLIQRPQEIERLPGCGGKIEKLYREWMADGCTAETKAA 324
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 332
+ ++ + F E+WG+ ATA++ ++KG R LDD+ SL +Q++G+KY+DD +
Sbjct: 325 AVNTELTVLRKFYEIWGVADATAREFFKKGWRDLDDIVEHGWSSLQRAQQIGVKYYDDFQ 384
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 392
RIPR E E + + + P ++ GSYRRGKA GD+DV+I HPD +
Sbjct: 385 LRIPRAETEAIANAILTHARRINPGFQMVIVGSYRRGKAESGDVDVIISHPDEAQTLNVV 444
Query: 393 SKYVKKLKEMKFLREDLIFSTHSE---------EGTD----SGVDTY---FGLCTYP--G 434
+ + L++ F++ L T + G D SG DT + P G
Sbjct: 445 KRLICSLEKSSFIKHTLSVWTRNSNREQAPLPWRGQDRSAGSGFDTLDKAMVVWQEPRDG 504
Query: 435 RE------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPA 487
RE R+D + P ++ W+G R LR ++K G + D +G+
Sbjct: 505 REHGGAPAPHRRVDIIISPWKTAGCAILGWSGETTFQRDLRRYCKAKMGLKFDSSGIRRR 564
Query: 488 TYGS-----GGKQGVRARTSLKFDT-EKEVFDFLGFPWLEPHER 525
GS +QG + +T E+ VF+ LG W P ER
Sbjct: 565 ADGSWVDLESSEQG----PAPDMETAERRVFEGLGLEWRPPAER 604
>gi|402863618|ref|XP_003896104.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Papio
anubis]
Length = 494
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 169/351 (48%), Gaps = 33/351 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLELGVCKEVERVRCSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T + R +V+ +++ +++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----REDLIFSTHSEEGTDSGVDTY------F 427
+I HP G L + ++ L++ + + + + + S +DT+ F
Sbjct: 333 FLITHPKEGQEAGLLPRVMRHLQDQGLILYHQHQHSRWESPTRLAQQSHMDTFERSFCIF 392
Query: 428 GLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 475
L PG + R+D V P + F L+ WTG+ + LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCASWKAVRVDLVVAPISQFPFALLGWTGSKLFQWELRRFSRKEK 452
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L+ GLF +T +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFHVTSEEDIFRHLGLEYLPPEQRN 493
>gi|336266798|ref|XP_003348166.1| hypothetical protein SMAC_04011 [Sordaria macrospora k-hell]
gi|380091102|emb|CCC11308.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 604
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 170/376 (45%), Gaps = 37/376 (9%)
Query: 182 SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES 241
+++ P+ ++ P N+ E K+ LG+ +Y AI + P+ ++S
Sbjct: 231 TTYACQRPAPMHPP---NEPFIEELMKIRTARTLLGDKIGVRAYSTAIAALTSYPYPLQS 287
Query: 242 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301
+V LPG G + E G+L + + E D ++ + LF E+WG+ TA++ Y
Sbjct: 288 TLEVARLPGCGFKIAQLYGEFREHGELQETKEDESDPRIAVLKLFYEIWGVAETTAREFY 347
Query: 302 EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
KG R LDD+ D+LT Q++G+KY+D+ + ++PR EVE + +++ + ++ P
Sbjct: 348 NKGWRDLDDIVEYGWDTLTRVQQIGVKYYDEFQQKVPRGEVESISQIILEHANKIHPGFQ 407
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH----- 414
++ G +RRGK S GD+DVV+ HPD + KGF+ + V L++ ++ LI ST
Sbjct: 408 MVIVGGHRRGKLSSGDVDVVLSHPDEAATKGFVEQIVVALEQSNYITHTLILSTKNTERG 467
Query: 415 --------SEEGTDSGVDT-----------YFGLCTYPGRELRHRIDFKVYPRDIYAFGL 455
+E+ +G DT ++ R+D + P +
Sbjct: 468 QVPVAWKGNEKKAGTGFDTLDKALVVWQDPHWTTGEKKNPNPHRRVDIIISPWKTAGCAV 527
Query: 456 IAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYG-----SGGKQGVRARTSLKFDTEK 509
+ WT R L R + + + D +G+ G G G A L E+
Sbjct: 528 LGWTSGTTFQRDLRRYCKKERSLKFDSSGIRSRADGRWVNYESGPNGEPAPDMLT--AER 585
Query: 510 EVFDFLGFPWLEPHER 525
V + L W P ER
Sbjct: 586 RVLEGLELEWRPPEER 601
>gi|408395235|gb|EKJ74418.1| hypothetical protein FPSE_05383 [Fusarium pseudograminearum CS3096]
Length = 594
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 168/364 (46%), Gaps = 43/364 (11%)
Query: 194 NPPDLNKNITEIFGKL---INIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP 249
NPP+ E F KL I R LG+D +Y +I + P+ ++++ +V LP
Sbjct: 239 NPPN------EAFVKLLTEIRTIRQLGKDDVGVRAYSTSIASVAAYPYPLKNSQEVARLP 292
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 309
G G + + TG+ +++ D ++ + +F ++WG+G ATA++ Y+KG + LD
Sbjct: 293 GCGDRIAELWHRWKETGESAEVREANADPRISVLKIFYDIWGVGAATAREFYQKGWQDLD 352
Query: 310 DLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
DL ++L+ SQ++G+KY+D+ + IPR EV + + K + P ++ G +R
Sbjct: 353 DLVEHGWNTLSRSQQIGVKYYDEFLSGIPRDEVASIGAAILKHARIIDPGFEMVIVGGHR 412
Query: 368 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------- 417
RGK GD+DVV+ H D +SK V L++ + L+ S H+ E
Sbjct: 413 RGKQESGDVDVVLSHRDESKTLHVISKIVVILEQAHLVTHTLVLSAHNSERGQRPVSWKG 472
Query: 418 --GTDSGVDTY-FGLCTY--------PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNR 466
+ SG DT L + P R R+D + P ++ W+G R
Sbjct: 473 QTSSSSGFDTLDKALVVWKDSSKEDAPHR----RVDIIISPWKTVGCAVLGWSGGTTFQR 528
Query: 467 RLRLLAE-SKGYRLDDTGLFPATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
LR + KGY+ D +G+ G G A ++ E+ VF LG PW
Sbjct: 529 DLRQYCKYVKGYKFDSSGIRHRADGRWVDLEGTSADNAAPDME-TAERRVFGGLGLPWRP 587
Query: 522 PHER 525
P R
Sbjct: 588 PEAR 591
>gi|311275846|ref|XP_003134936.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Sus scrofa]
Length = 491
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 167/359 (46%), Gaps = 48/359 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G R S+ +A V++ LP + + Q++GLP G+ +
Sbjct: 149 NASLSEALETLAEAADFDGSKGRHVSFCRAASVLKALPSPVTALSQLQGLPHFGEHSRRV 208
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
IQE++ G ++E E+ +T+ LF +++G+G TA + Y++G RTLDDL+ + L
Sbjct: 209 IQELLEHGVCEEVERVRLSERYQTMKLFTQIFGVGVRTADQWYQEGLRTLDDLREQPQRL 268
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL+++ D+ I R EVE ++++++ A +VLP + G +RRGK D+D
Sbjct: 269 TKQQKAGLQHYQDLSALILRSEVEALQQVVEAAVGQVLPGATVTLAGGFRRGKLQGHDVD 328
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS----------GVDTY- 426
+I HP G L + L+ ++ L+ + G +D +
Sbjct: 329 FLITHPQEGLEAGLLPSVICCLE-----KQGLVLYHQHQRGQQGDPTHLAQKPHAMDAFE 383
Query: 427 FGLCTY------------------PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
LC + P + + R+D V P + F L+ WTG+ R L
Sbjct: 384 MSLCIFRLPRPPEAAVGGPREPCPPWKAV--RVDLVVTPISQFPFALLGWTGSKHFEREL 441
Query: 469 RLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R + + +G L+ GLF + + +E+++F LG +L P +RN
Sbjct: 442 RRFSRKERGLWLNSHGLFDS----------EQKMPFHVASEEDIFGLLGLEYLPPEQRN 490
>gi|284009756|ref|NP_001164987.1| polymerase (DNA directed), mu [Xenopus (Silurana) tropicalis]
gi|169642654|gb|AAI60552.1| Unknown (protein for MGC:135998) [Xenopus (Silurana) tropicalis]
Length = 406
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 162/356 (45%), Gaps = 38/356 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 60 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 119
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 120 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 179
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL ++ D++ + R E +E+L++ A + +P+V + G +RRGK D+D
Sbjct: 180 TAEQKAGLLHYTDLQQSVTREEAGTVEQLIKGALQSFVPDVRVTMTGGFRRGKQEGHDVD 239
Query: 378 VVIMHPDRKSHKGFLSKYVKKLK---EMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
+I HPD ++ G L K V L + + S T G +T + + P
Sbjct: 240 FLITHPDEEALNGLLRKAVAWLDGKGSVLYYHVRARSQNFSGSNTMDGHETCYSIIALPN 299
Query: 435 -------------------RELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
LR+ R+D V P Y + L+ WTG+ R LR
Sbjct: 300 VCPEKPSPDAEKIEPDLDKNSLRNWKAVRVDLVVCPYSEYFYALLGWTGSKHFERELRRF 359
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ K L+ GLF ++ + +E+E+F LG P++ P ERN
Sbjct: 360 SLHVKKMSLNSHGLF----------DIQKKCHHPATSEEEIFAHLGLPYVPPSERN 405
>gi|348560142|ref|XP_003465873.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed DNA/RNA polymerase
mu-like [Cavia porcellus]
Length = 500
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 168/356 (47%), Gaps = 45/356 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R S+ +A V++ LP+ + Q++GLP G+
Sbjct: 161 NSSLSEALETLAEAAGFEGSEGRLLSFRRAASVLKALPWPVTELSQLQGLPHFGEHSTSV 220
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SL 317
IQE++ G ++E E+ RT+ LF +++G+G TA + Y++G RTLD+L+ + L
Sbjct: 221 IQELLERGVCEEVERVRCSERYRTMKLFTQIFGVGVKTANQWYQEGLRTLDELQEQPRRL 280
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T R + E +++L++ + LP + G +RRGK D+D
Sbjct: 281 TRQQQAGLQHHLDLCTPXGRPDAEALQQLVEATVRQALPGATVTLTGGFRRGKPQGHDVD 340
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG-----------VDTY 426
+I HP+ G L +++L+ +DL+ H + + G +D +
Sbjct: 341 FLITHPEEGREAGLLPSVLRQLQS-----QDLVL-YHQHQRSRLGDPSRLAQQSHTMDAF 394
Query: 427 -FGLC--------------TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
LC + P + R+D V P + F L+ WTG+ + R LR
Sbjct: 395 ERSLCILRLPLPSKGADPESQPAWKAV-RVDLVVTPWSQFPFALLGWTGSQLFERELRRF 453
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ + KG L+ GLF RT +E+++F LG +L P +RN
Sbjct: 454 SRKEKGLCLNSHGLF----------DPEQRTCFHVASEEDIFRHLGLTYLPPEQRN 499
>gi|440639014|gb|ELR08933.1| hypothetical protein GMDG_03600 [Geomyces destructans 20631-21]
Length = 678
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 179/396 (45%), Gaps = 59/396 (14%)
Query: 179 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKL 235
PD+ +S+ + LY LN E + I R L +D +Y +I +
Sbjct: 290 PDYLKTSYSCQRTTPLYT---LNDPFIEFLVR-IRQSRILTDDEVGVRAYSTSIASLAAY 345
Query: 236 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
P I +A+++ LPG + + QE TG + ++ +KD +++T++LF E+WG+GP
Sbjct: 346 PHTISTAEEILHLPGCSERIAALWQEFNDTGHIGAVDDIDKDPEMQTLNLFYEIWGVGPK 405
Query: 296 TAQKLY-EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 352
A+ Y KG R LDD+ ++L+ Q++G+KY+++++ +IPR EVE++ ++ +A
Sbjct: 406 GARDFYYRKGWRDLDDVVEFGWNNLSRVQQIGVKYYEELQQKIPRDEVERIGAVILEAAN 465
Query: 353 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 412
V P + G YRRGK GD+DVV+ +PD + + V++++ +++ L+ S
Sbjct: 466 HVAPGCQMTIVGGYRRGKPESGDVDVVVSNPDEIVTLYLVQRIVEEIERREWITHTLLLS 525
Query: 413 THSEE----------------GTDSGVDT------YFGLCTYPGRE-------------L 437
T + E G G DT + +P RE +
Sbjct: 526 TANSERKQTAVSWKGDMGHTGGFGVGFDTLDKALVVWQDPEWPTREEDLAADPRAKNPNV 585
Query: 438 RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR--------LLAESKGYRLDDTGLFPATY 489
R+D V P + WT R LR L +S G R D G +
Sbjct: 586 HRRVDIIVSPWRTVGCAVAGWTSGTTFQRDLRRYVKAVLGLKFDSSGVRRRDDGAWVDLE 645
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G GGK EK VF+ LG W EP ER
Sbjct: 646 GVGGK------APDMLTAEKRVFEGLGLEWREPGER 675
>gi|412990966|emb|CCO18338.1| DNA polymerase lambda [Bathycoccus prasinos]
Length = 739
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 187/390 (47%), Gaps = 39/390 (10%)
Query: 161 SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGK----LINIYRAL 216
+ M S+ N + H + P+ D NK++ ++F L ++Y
Sbjct: 365 ASMESDVRQNYYHSLENMKKIKKHFMCQPAERVGNQDANKSLIDMFSNYGALLQDMYPDN 424
Query: 217 GEDR-RSFSYYKAIPVIEKLPFKIESAD-------QVKGLPGIGKSMQDHIQEIVTTGKL 268
+ R R +Y K ++E P+++ + +G G+G+SM + ++ V+ L
Sbjct: 425 KQQRGRGNAYVKIARLLESTPYELTPNNIDDFIEKNRRGGQGMGESMCNKLKYAVSFKVL 484
Query: 269 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKN-------EDSLTHS 320
+ E F KD V + V GIG TA K YE+ + ++++DL+ + L +
Sbjct: 485 PEYEAFLKDPSVIAVKDMSRVHGIGTKTAYKFYERFNLKSVEDLRALLSSGDPNNILKND 544
Query: 321 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 380
R+ LKY +D++ RIPR E +++ ++++ E ++ + GSYRRGK +CGD+DV++
Sbjct: 545 MRISLKYLEDLEDRIPREEAKEIGDFVRESVENIVKGAQVEVAGSYRRGKPTCGDVDVLV 604
Query: 381 MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP-GRELR- 438
+ + G L V + R LI S +GT G D + G+C P G+E R
Sbjct: 605 CLKENQKKDGVLQNIVDDID-----RRGLI-SARLSQGT-FGQDNFMGVCKLPDGKENRK 657
Query: 439 -HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
R+D K+Y +A L+ +TG+ NR +R G+ LDD GL+ S + V
Sbjct: 658 HRRLDIKIYEPKQFATALLYFTGSGRFNRSMRTYTHMMGWHLDDKGLYMDRNKSRRVETV 717
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
TE+++F LG ++ P +R++
Sbjct: 718 ---------TEQDIFAALGLDYVRPQDRSV 738
>gi|54304021|emb|CAH59753.1| DNA polymerase lambda [Homo sapiens]
Length = 211
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 6/216 (2%)
Query: 303 KGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC 362
+G + +D++++ SLT Q +G K++ D R+PR E ++E+ +QKA + + +
Sbjct: 1 QGFXSXEDIRSQASLTTQQAIGXKHYSDFLERMPREEATEIEQTVQKAAQAFNSGXLCVA 60
Query: 363 GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 61 CGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQ-- 116
Query: 423 VDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
Y G+C PG RH R+D V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 117 -QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSE 175
Query: 482 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
L A + V L TEK+VF LG
Sbjct: 176 HALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGL 211
>gi|297680548|ref|XP_002818050.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Pongo
abelii]
Length = 501
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 171/358 (47%), Gaps = 40/358 (11%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T + R +V+ +++ +++A +VLP + G +RRG+ + D+D
Sbjct: 273 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQVLPGATVTLTGGFRRGEVAGHDVD 332
Query: 378 VVIMHPDRKSHKGFLSKYVKKLK--EMKFLREDLIFSTHSEEGT---------DSGVDTY 426
+I HP G L + ++ L+ + + LI + + S +D +
Sbjct: 333 FLISHPKEGHEAGLLPRVMRCLQTSHARLSPQGLILYHQHQHSSWESPTCLAQQSHMDAF 392
Query: 427 ------FGLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
F L PG + R+D V P + F L+ WTG+ + R LR
Sbjct: 393 ERSFCIFRLPQPPGATVGGSTRPCPSWKAVRVDLVVAPISQFHFALLGWTGSKLFQRELR 452
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ + KG L+ GLF +T +E+++F LG +L P +RN
Sbjct: 453 RFSRKEKGLWLNSHGLF----------DPEQKTFFHAASEEDIFRHLGLEYLPPEQRN 500
>gi|164451472|ref|NP_001030363.2| DNA-directed DNA/RNA polymerase mu [Bos taurus]
Length = 488
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 162/350 (46%), Gaps = 33/350 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL---------REDLIFSTHSEEGTDSGVDTYFG 428
+I HP G L + + LK+ + + DL +H+ + + F
Sbjct: 329 FLITHPQEGQEAGLLPRVMCYLKKQGLVLYHQHQHSQQGDLTQQSHTMDAFERSF-CIFR 387
Query: 429 LCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKG 476
L PG + R+D V P + F L+ WTG+ R LR + + +G
Sbjct: 388 LPQPPGAAVGGAQKPCYAWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKERG 447
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L+ GLF +T +E+++F L +L P RN
Sbjct: 448 LCLNSHGLF----------DPEQKTVFHVASEEDIFRLLDLEYLPPELRN 487
>gi|392560796|gb|EIW53978.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 626
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 175/400 (43%), Gaps = 94/400 (23%)
Query: 209 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 267
+I RAL GEDR + SY +AI VI+ P KI S QV+ LP IG + + E + TG
Sbjct: 236 IIRQSRALEGEDRSALSYQRAISVIKAYPEKIRSLKQVQKLPYIGVKISGLVDEYLDTGH 295
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK--------------- 312
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+LDDL+
Sbjct: 296 ISEAQTIKSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLDDLEIYYGVEPSSSTASPS 355
Query: 313 ------------------------------NEDSLTHSQ-RLGLKYFDDIKTRIPRHEVE 341
+E+ L S R+ L +D+ IPR EVE
Sbjct: 356 SQPSQIVEIEEKEKTRQAGWKSRDKDRGKGDEEGLGDSWIRVALGLREDLSKMIPRDEVE 415
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
++ R++ + + + P + G YRRGK D+D+V HPD KG ++V+ L E
Sbjct: 416 EIGRVVMRELDALEPGCVSTIVGGYRRGKPESNDVDIVFTHPDAGKVKGLCKRFVRHLHE 475
Query: 402 MKFLREDL---------------------IFSTHSEEGTDSG----VDTYFGLCTYPGRE 436
+ + + S H+ + + ++ + P
Sbjct: 476 RGMVTHVMRTPPPPPLLYPSQARANTKADLSSFHAHDPLRTAHWDTLEKSLTVFVLPASS 535
Query: 437 -------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPAT 488
+R R+D P ++Y ++ W+G+ + R LR A+ + G + D +G+
Sbjct: 536 ALNSSVPVRRRLDLIFAPPEVYWTAVVGWSGSIMFQRDLRQWAKDRCGMKFDSSGI---- 591
Query: 489 YGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHERN 526
R S +F TEKEVF+ LG W++P RN
Sbjct: 592 --------TRRYDSKEFHPKTEKEVFELLGLEWVDPVWRN 623
>gi|254656359|gb|ACT76274.1| DNA-directed DNA polymerase beta, partial [Sebastiscus marmoratus]
Length = 216
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 21/226 (9%)
Query: 265 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRL 323
TGKL KLE D+ +I+ V GIGPA A+K +E+G +TL+DLK E+ L H Q++
Sbjct: 1 TGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFEEGVKTLEDLKKIENKLNHHQQI 60
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
GLKYF++ + RIPR E+E+ME L+ +E+ E I SYRRG AS GD+D+++ HP
Sbjct: 61 GLKYFEEFEKRIPRAEMEKMETLILAELKEISTEYIGTICRSYRRGAASSGDIDILLTHP 120
Query: 384 DRKS----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE--- 436
D S L V+ + F+ + L G + G+C +
Sbjct: 121 DYSSDTQKQPKLLHDVVEHFVSIGFVTDTL----------SKGDTKFMGVCQLQQSDEDE 170
Query: 437 ---LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
RID ++ P D Y G++ +TG+D+ N+ +R A KG+ L
Sbjct: 171 EEYFHRRIDIRLIPNDQYYCGVLYFTGSDIFNKNMRTHALEKGFTL 216
>gi|255079262|ref|XP_002503211.1| predicted protein [Micromonas sp. RCC299]
gi|226518477|gb|ACO64469.1| predicted protein [Micromonas sp. RCC299]
Length = 742
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 179/377 (47%), Gaps = 49/377 (12%)
Query: 195 PPDLNKNITEIFGKLINIYRAL--GEDRRSFSYYKAIP-VIEKLPFKIESADQVKGLPGI 251
P +LN +IT +L IY + G + ++K + +E+L F + +Q+ P
Sbjct: 371 PVNLNPHITRPLEELAAIYEDVLGGTNAYKARHHKQVAGAVERLDFVVTDVEQLCDPPVT 430
Query: 252 ------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKG 304
+++D I+E++ TGKL+KLE ++ V + VWGIG TA+KL+ E G
Sbjct: 431 PAFAQKTSTVRDKIRELLATGKLAKLEELKRKPDVEAVLELSGVWGIGTETARKLHREDG 490
Query: 305 HRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
T+ L+ L+ +Q +GL+++++ K RIPR EVE + ++ A V P
Sbjct: 491 VSTVAQLRALAARQPGKLSANQHVGLRFYEEFKERIPRDEVEALAGHVEDAVAAVCPGCS 550
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPD---RKSHKG-----------FLSKYVKKLKEMKFL 405
+ GSYRRGK SCGD+DV++ + R +G L + +L+ +
Sbjct: 551 VTVAGSYRRGKTSCGDVDVLLCPSEEFIRGGSQGAPGATVDTVEDILPAVLARLRTRGVV 610
Query: 406 REDLIFSTHSEEG--------------TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIY 451
+DL T S G T G + + + L R+D K Y D
Sbjct: 611 TDDLSTGTVSWMGVARLPDSRERLAPTTTDGAEGDGAVAVVTPKRLHRRMDIKTYTPDEM 670
Query: 452 AFGLIAWTGNDVLNRRLRLLAE-SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 510
F L+ +TG+ NR +R A+ +KG L D G F G+ + A KF E++
Sbjct: 671 PFALLYFTGSGYFNRSMRTWADKAKGLSLHDRG-FNLVRGN----DMTAVRDAKFRDERD 725
Query: 511 VFDFLGFPWLEPHERNL 527
VF++LG ++ P +R++
Sbjct: 726 VFEYLGLEYVPPEDRSV 742
>gi|20067687|emb|CAD29085.1| chimeric DNA-directed DNA polymerase bf4-11 [synthetic construct]
Length = 324
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 174/342 (50%), Gaps = 42/342 (12%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 369
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ D+D++I+ P++K K L +F+ + L G + G+
Sbjct: 189 EKMLNDVDLLIIVPEKKLLKHVLPN--------RFITDTL----------SKGETKFMGV 230
Query: 430 CTYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
C P E H RID ++ P + + + +TG R+R + G+ +++ +
Sbjct: 231 CQLPSENDENEYPHRRIDIRLIPAEEKPYAIFHFTGPVSYLIRIR---AALGFTINEYTI 287
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 288 RPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 323
>gi|367024231|ref|XP_003661400.1| hypothetical protein MYCTH_2300738 [Myceliophthora thermophila ATCC
42464]
gi|347008668|gb|AEO56155.1| hypothetical protein MYCTH_2300738 [Myceliophthora thermophila ATCC
42464]
Length = 636
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/523 (23%), Positives = 210/523 (40%), Gaps = 58/523 (11%)
Query: 53 KLSKKVTHVLAMDLEALLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLS 112
++ +++T + V+R W DS++ G+ + D Y + + +
Sbjct: 119 EIQRRLTGPGPGPAAPAVTVKVVRLGWFTDSVKAGQVLPIDDYVVYQGRKVPRTPAKAPQ 178
Query: 113 QIQGNGNTSSDGESSHRKKIKSSTE-----DVEHFQAESKGDVETNALSEAPNSPMSSES 167
+ + R + + ++G+ T S P+ ++
Sbjct: 179 PVPAERAAERAADVMKRALADAGGQSRSPRPGSSSSRGARGETYT---SHPVRPPLVRQT 235
Query: 168 LTNTLSTASAS--PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF 223
+ A PDF +++ P+ ++ P N+ E K+ +G+
Sbjct: 236 TSEHEIDAQLPPIPDFLHTTYSCQRPTPVHPP---NEAFIEELAKIKTARTLVGDKIGVR 292
Query: 224 SYYKAIPVIEKLPFKIESAD-----QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 278
+Y AI I P+ ++A +V LPG G + QE TG++ + E D
Sbjct: 293 AYSSAIATIAAYPYTFQTAQENRSTEVSRLPGCGNKIALLFQEFKDTGQIREAREDESDP 352
Query: 279 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 336
K+ + LF +WG+ TA+ Y +G R LDD+ ++LT Q++G+KY+D+ + RIP
Sbjct: 353 KLAVLKLFYNIWGVAETTARDFYNRGWRDLDDIVEYGWETLTRVQQIGVKYYDEFQQRIP 412
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
R EVE + ++ ++ ++ G YRRGK + GD+DVV+ H D + + F+ + V
Sbjct: 413 RAEVEAIANVILAHANQIRDGFEMVIVGGYRRGKEASGDVDVVLSHRDESATRDFVGRLV 472
Query: 397 KKLKEMKFLREDLIFSTHSEE---------GTD-----SGVDTY--------------FG 428
+L+ ++ L ST + E G D +G DT G
Sbjct: 473 VRLERAGYVTHTLSLSTANSERGQVPVSWKGNDRSRAGTGFDTLDKALVVWQDPVRATTG 532
Query: 429 LCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 487
P R+D + P ++ WTG R LR K + D +G+
Sbjct: 533 EARNPNSNPHRRVDIIISPWKTAGCAVLGWTGGTAFQRDLRRYCRREKQLKFDSSGIRSR 592
Query: 488 TYGS-----GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
T GS G G A L EK VF LG W P ER
Sbjct: 593 TDGSWVDLESGPDGSPAPDMLT--AEKRVFAGLGLEWRPPEER 633
>gi|330935988|ref|XP_003305205.1| hypothetical protein PTT_17985 [Pyrenophora teres f. teres 0-1]
gi|311317881|gb|EFQ86703.1| hypothetical protein PTT_17985 [Pyrenophora teres f. teres 0-1]
Length = 709
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 178/397 (44%), Gaps = 50/397 (12%)
Query: 173 STASASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 231
S ASPD+ +++ + P + N+ E K+ + +D +Y I
Sbjct: 316 SDIPASPDWVKNYVKYSCQRFTPANGPNEEFLEQLKKIRTARTLIDDDIGVRAYSTIIAS 375
Query: 232 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 291
I PF++ ++ LPG + E TGK+ +E ++ DE ++ + F +WG
Sbjct: 376 IAAYPFELSHPRELARLPGCDEKTAALFVEWKNTGKIQAVEDYDNDEAMKVLRCFYNIWG 435
Query: 292 IGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
+G TA+ Y H T LDDL + L Q++G+KY++++ IPR EVE++ +++
Sbjct: 436 VGAKTARHFYYNNHWTELDDLVEYGWNDLERVQQIGVKYYEELLLPIPRDEVERIGAIVR 495
Query: 349 KAGEEVL----PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 404
E V+ V + G YRRGKA GD+D+++ HPD KS G + + V+ L+E +
Sbjct: 496 ---EHVVRLRDDRVTVTLVGGYRRGKAESGDVDMIVSHPDVKSTAGLVREIVESLEETGW 552
Query: 405 LREDLIFST------------HSEEGTDSGVDT------YFGLCTYPGRE---------- 436
+ L S S +G DT + T+P RE
Sbjct: 553 ITHTLTMSLTNTARGQQVLPFRSTRAAGAGFDTLDKALVVWQDPTWPTRERDLAENPKAK 612
Query: 437 ---LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGS- 491
+ R+D + P ++ W+G R LR A++ KG++ D +G+ + G
Sbjct: 613 NPAIHRRLDIIIAPWRTVGCAVMGWSGGTTFQRDLRRYAKAVKGWKFDSSGIRSRSTGEV 672
Query: 492 ---GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G GV D EK+VF+ LG ++ P R
Sbjct: 673 IMLEGPDGVDGTPE---DAEKKVFEGLGLEYIPPEYR 706
>gi|149704611|ref|XP_001495709.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Equus caballus]
Length = 489
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 165/350 (47%), Gaps = 32/350 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R S+ +A V++ LP + + Q++GLP G+
Sbjct: 149 NTSLSEALETLAEAAGFEGSEGRFLSFCRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 209 VQELLEHGVCEEVERVRLSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLRGQPQRL 268
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL+++ D+ + R ++E ++++++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHYQDLSALVQRPDLEALQQVVEAAVGQALPGATVTLTGGFRRGKLQGHDVD 328
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL-------REDLIFSTHSEEGTDSGVDTY--FG 428
+I HP+ G L + + LK+ + ED T D+ ++ F
Sbjct: 329 FLITHPEEGREAGLLPRVMCCLKKQGLVLYHQHHRSEDPTHLTQQSHTMDAFERSFCIFR 388
Query: 429 LCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKG 476
L PG + R+D P + F L+ WTG+ R LR + + +G
Sbjct: 389 LPQPPGSAVGGHQRPCPAWKAVRVDLVAVPISQFPFALLGWTGSRHFERELRRFSWKERG 448
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L+ GLF +T +E+++F LG +L P +RN
Sbjct: 449 LLLNSHGLF----------DPEQKTFFHAASEEDIFRHLGLEYLPPEQRN 488
>gi|441432439|ref|YP_007354481.1| DNA polymerase family X [Acanthamoeba polyphaga moumouvirus]
gi|440383519|gb|AGC02045.1| DNA polymerase family X [Acanthamoeba polyphaga moumouvirus]
Length = 357
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 167/315 (53%), Gaps = 37/315 (11%)
Query: 231 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 287
++++L F+I + G+ GIG S + I EI+ TGKLS+L++ +K ++ +I
Sbjct: 48 ILKRLDFEITDPSDLDGIRGIGTSTKRRIAEILETGKLSELKNKYDKKKQSQINSIQELE 107
Query: 288 EVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVE 341
+V GIG +TA+KL K G R++D+LK N+ +++++ LGLKY+ ++ IPR E+
Sbjct: 108 KVIGIGSSTAKKLITKHGIRSVDELKKAIKLNKITVSNAILLGLKYYGVVEGNIPRKEIT 167
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK------- 394
Q+E+ L +++ ++ ++ GSYRRGK + GD+DV++ H K+ K L+
Sbjct: 168 QIEKYLVSQAKDINEDLELIICGSYRRGKPTSGDIDVLMYHRAMKTTKEILNHEKYNLEP 227
Query: 395 ----YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDI 450
Y+ +L FL + + TD+ Y G C Y +R RID + P
Sbjct: 228 YFEMYIGQLTNNGFLLDHM---------TDAATKKYMGFCKYKSYPVR-RIDIRFVPYQS 277
Query: 451 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 510
++ +TG LN +R A+ + L++ GL+ + G+ + +K +E +
Sbjct: 278 LPSAMLYFTGPYELNTIMRSAAKKRKMILNEYGLYKV-----DENGL--KIPVKIKSEAD 330
Query: 511 VFDFLGFPWLEPHER 525
+F+ LG +L P ER
Sbjct: 331 IFNALGMDYLTPEER 345
>gi|74136509|ref|NP_001028151.1| DNA nucleotidylexotransferase [Monodelphis domestica]
gi|3024713|sp|O02789.1|TDT_MONDO RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|2149634|gb|AAC17587.1| terminal deoxynucleotidyltransferase [Monodelphis domestica]
Length = 518
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 167/361 (46%), Gaps = 43/361 (11%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ T+ F L Y D ++ +AI V++ LPF++ S +GLP IG ++
Sbjct: 167 NQRFTDAFEILAKNYEFKENDDTCLTFMRAISVLKCLPFEVVSLKDTEGLPWIGDEVKGI 226
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 317
++EI+ G+ +++ DE+ ++ LF V+G+G TA K Y G RTL+ ++++ +L
Sbjct: 227 MEEIIEDGESLEVQAVLNDERYQSFKLFTSVFGVGLKTADKWYRMGFRTLNKIRSDKTLK 286
Query: 318 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
T Q+ GL Y++D+ + + E + + L+Q A LP+ ++ G +RRGK D+
Sbjct: 287 LTKMQKAGLCYYEDLIDCVSKAEADAVSLLVQDAVWTFLPDALVTITGGFRRGKEFGHDV 346
Query: 377 DVVIMHP--DRKSHKGFLSKYVKKLKEMKFLR---------EDLIFSTHSEEGTDSGVDT 425
D +I P +++ L K K+ L EDL + + D
Sbjct: 347 DFLITSPGAEKEQEDQLLQKVTNLWKKQGLLLYCDLIESTFEDLKLPSRKIDALDHFQKC 406
Query: 426 YFGLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNR 466
+ L Y +E + R+D V P D YAF L+ W+G+ R
Sbjct: 407 FLILKLYHHKEDKRKWEMPTGSNESEAKSWKAIRVDLVVCPYDRYAFALLGWSGSRQFER 466
Query: 467 RLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
LR A K LD+ L+ T + LK +E+E+F LG +++P ER
Sbjct: 467 DLRRYATHEKKMMLDNHALYDKT----------KKIFLKAKSEEEIFAHLGLEYIQPSER 516
Query: 526 N 526
N
Sbjct: 517 N 517
>gi|405122355|gb|AFR97122.1| DNA polymerase lambda [Cryptococcus neoformans var. grubii H99]
Length = 598
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 170/350 (48%), Gaps = 29/350 (8%)
Query: 199 NKNITEIFGKLINIYRA-LGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N+ + E F +L ++Y +G++ S Y+ A + + F I S Q + + GIG+++
Sbjct: 253 NEWLAEKFDQLHDLYNGQVGKNPHSIRQYRNAAAAMRRTTFPITSGAQARKINGIGEALA 312
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 315
+ I E ++ + +E +E R ++LF +++G+G A +LY+ G RT+ DL+
Sbjct: 313 ERINEFISG--VPGRAFYEDNEHARCVALFKDIYGVGRQYANELYQMGARTITDLRTGRF 370
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
L+ Q++GL ++D+++ IPR E +Q+ L++ + V ++ + GSYRRG + GD
Sbjct: 371 PLSPGQQIGLALYEDLRSLIPREECKQIFELIKLEAKTVDEKLWVEIMGSYRRGSETSGD 430
Query: 376 LDVVIMHPDR--KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
+D++I D K+HKG + K V KLK + +L + H ++ + G+
Sbjct: 431 VDILITRDDTDGKTHKGAIKKLVDKLKAKGVITHEL-SAPHDWNALEA---KWMGVGRVG 486
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTG------------------NDVLNRRLRLLAESK 475
+ RID P + + LI +TG + NR LRL A
Sbjct: 487 QSAIYRRIDILCVPYESWGASLIYFTGKTDPPLVTRDGRINHSLSSSQFNRSLRLYARKL 546
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GY L+ GL+ + V + TE+E+F LG W PH R
Sbjct: 547 GYNLNQRGLYRNVVRAIDGTKVLEGDRVASRTEEEIFQELGLRWRHPHHR 596
>gi|453085134|gb|EMF13177.1| Nucleotidyltransferase [Mycosphaerella populorum SO2202]
Length = 730
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 181/403 (44%), Gaps = 50/403 (12%)
Query: 171 TLSTASASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSF-SYYKA 228
T S P++ H+ P D N ++ G+ I R L D +Y +
Sbjct: 327 TSSDIPEPPEWVKAHVKYACQRSTPKDNPNDVFIDLLGR-IKFARLLTNDEIGVRAYATS 385
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
I + ++I + ++ +PG + + E GK+ +E EKDE ++ + LF
Sbjct: 386 IAALRSHSYEISNPQEILRIPGCDAKIANLWVEWKNNGKIKAVEEAEKDEDLKILKLFWN 445
Query: 289 VWGIGPATAQKL-YEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 345
+WG+G TA++ Y++G R LDD+ +L Q++G+KY+D+ IPR EVE + +
Sbjct: 446 IWGVGVTTAREFYYDRGWRELDDIVEYGWSTLQRVQQIGVKYYDEFLDPIPRAEVESICK 505
Query: 346 LLQKAGEEVLPEVI--ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 403
++ + +V + I ++ GG YRRGK +CGD+D+VI HPD + + V L+
Sbjct: 506 VVHQHAVKVRDDGIQSMIVGG-YRRGKEACGDVDIVISHPDEAATHNVVEDIVASLENEG 564
Query: 404 FLREDLIFSTHSE-----------EGTDSGVDT------YFGLCTYPGRE---------- 436
++ L S ++ +G G DT F ++P ++
Sbjct: 565 WITHTLTLSINNSKRGQQTLPFRGDGGGHGFDTLDKALVVFQDPSWPSKDEDLAMNPKAK 624
Query: 437 ---LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGS- 491
+ R+D + P ++ W+G R LR A++ KG++ D +G+ G
Sbjct: 625 NPNIHRRVDIIIAPWRTVGCAVVGWSGGTTFERDLRRYAKNVKGWKFDSSGVRDVGNGQF 684
Query: 492 ---------GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G K+GV R + E+ VF+ G + +P ER
Sbjct: 685 LDLEGYFQYGDKEGVEGRAMTMEEAERRVFEGFGLEYRKPDER 727
>gi|169621167|ref|XP_001803994.1| hypothetical protein SNOG_13791 [Phaeosphaeria nodorum SN15]
gi|160704194|gb|EAT78815.2| hypothetical protein SNOG_13791 [Phaeosphaeria nodorum SN15]
Length = 710
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 175/389 (44%), Gaps = 46/389 (11%)
Query: 179 PDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 236
PD+ +H+ + P + N++ E K + R L +D +Y I I P
Sbjct: 323 PDWVKNHVKYACQRFTPANGPNEDFLEHLKK-VRTARTLIDDEIGVRAYSTIIASIAAYP 381
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
K+ ++ LPG + E TG++ +E FE DE ++ + F ++WG+G T
Sbjct: 382 HKLSHPRELAQLPGCDEKTAVLFVEWKNTGRIQAVEDFENDEAMKVLRSFYDIWGVGAKT 441
Query: 297 AQKLYEKGHRT-LDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
A+ Y H T LDD+ + L Q++G+KY+D+ IPR EVEQ+ ++++ +
Sbjct: 442 ARHFYYNNHWTELDDVIEFGWNELDRVQQIGVKYYDEFLVPIPRPEVEQIASVVREHAVQ 501
Query: 354 VLPEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 412
+ + I + G YRRGKA+ GD+D+++ HPD +S G + V+ L+E +++ L S
Sbjct: 502 LRDDRISVTIVGGYRRGKAASGDVDMIVSHPDLESTAGLVRDIVESLEEAQWITHTLTMS 561
Query: 413 T------------HSEEGTDSGVDT------YFGLCTYPGRE-------------LRHRI 441
S +G G DT + + RE + R+
Sbjct: 562 LTNTNRGQHTLPFRSAKGAGVGFDTLDKALVVWQNPAWQNREQDLSENPSAKNPNIHRRV 621
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGSG----GKQG 496
D + P ++ W+G R LR A++ KG++ D +G+ T G G G
Sbjct: 622 DIIIAPWRTVGCAVMGWSGGTTFQRDLRRYAKAIKGWKFDSSGIRSRTSGEAIWLEGPTG 681
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHER 525
V D EK VF LG ++ P R
Sbjct: 682 VDGTPE---DAEKAVFKGLGLEYIPPEYR 707
>gi|452984299|gb|EME84056.1| hypothetical protein MYCFIDRAFT_162909 [Pseudocercospora fijiensis
CIRAD86]
Length = 516
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 47/348 (13%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y +I I K +A ++ LPG + + E TG + +E DE ++ +
Sbjct: 167 AYSTSIAAIAAYTHKFSTAKEILALPGCDSKIANLWVEWKNTGTIKAVEDARNDEDLKVL 226
Query: 284 SLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
LF +WG+G ATA+ Y ++G R LDD+ +L Q++G+KY+D+ + IPR EV
Sbjct: 227 RLFYNIWGVGVATARDFYFDRGWRELDDIVEYGWSTLVRVQQIGVKYYDEFQDLIPRAEV 286
Query: 341 EQMERLLQKAGEEVLPEVI--ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
EQ+ +++K +V + I ++ GG YRRGK + GD+D+V+ HP+ ++ V
Sbjct: 287 EQICEVIRKHAVKVRDDGIQTVIVGG-YRRGKEASGDVDIVVTHPNESCTLNLVNDVVGS 345
Query: 399 LKEMKFLREDLIFSTHSEE-----------GTDSGVDT------YFGLCTYPGR------ 435
L+E +++ L S S E G G DT + +P +
Sbjct: 346 LEEEEWITHTLTVSNASSERDQQTLPFRAGGGGHGFDTLDKALVVWQNPVWPSKAQDLAE 405
Query: 436 -------ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGL--- 484
+ R+D + P ++ W+G R LR A++ KG++ D +G+
Sbjct: 406 NAQAKNPNIHRRVDIIISPWRTVGCAVVGWSGGTTFERDLRRYAKNVKGWKFDSSGVRNR 465
Query: 485 -------FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ GK+G R + E+ VF+ LG + EP ER
Sbjct: 466 GNGEVVDLEGYFSWEGKEGKEGRAKTIEEAERRVFEGLGLRYREPWER 513
>gi|358377469|gb|EHK15153.1| hypothetical protein TRIVIDRAFT_51446 [Trichoderma virens Gv29-8]
Length = 598
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 174/372 (46%), Gaps = 29/372 (7%)
Query: 179 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKL 235
PDF +++ PSL+ +PP+ I E+ K I R L D+ +Y +I +
Sbjct: 228 PDFLHTTYSCQRPSLV-SPPNAT-FIAEL--KAIRTLRLLRGDQVGVRAYSTSIASLAAY 283
Query: 236 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
P ++ +++ LPG G + Q+ G + + D ++ + F ++WG+G
Sbjct: 284 PHLLQRPQEIERLPGCGPKIAQLYQQWTEDGCTDETRKAKTDTELVVLKTFYDIWGVGDT 343
Query: 296 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
TA++ ++KG R LDD+ DSL+ Q++G+KY+D+ + +IPR E E + ++
Sbjct: 344 TARQFFKKGWRDLDDIVEYGWDSLSRVQQIGVKYYDEFQLKIPRDETETIASVILAHARR 403
Query: 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFS 412
V P ++ GSYRRGK S GD+DVV+ HPD + + V L++ F+ L +++
Sbjct: 404 VDPGFQMVIVGSYRRGKPSSGDVDVVLSHPDEAQTLDIIERLVSSLEKSNFITHTLSVWT 463
Query: 413 THSEEG------------TDSGVDTY---FGLCTYPGRELRH-RIDFKVYPRDIYAFGLI 456
+SE G SG DT + P + H R+D + P ++
Sbjct: 464 KNSERGQAPLAWKGEGRRAGSGFDTLDKAMVVWQNPQDKGPHRRVDIIISPWKTAGCAIL 523
Query: 457 AWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGG--KQGVRARTSLKFDTEKEVFD 513
W+G R LR + K G++ D +G+ GS + R E+ VF+
Sbjct: 524 GWSGETTFQRDLRRYCKVKMGFKFDSSGVRSRADGSWVDLESSERGPAPDMETAERRVFE 583
Query: 514 FLGFPWLEPHER 525
L W P ER
Sbjct: 584 GLDLEWRPPAER 595
>gi|390599031|gb|EIN08428.1| Nucleotidyltransferase [Punctularia strigosozonata HHB-11173 SS5]
Length = 325
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 145/324 (44%), Gaps = 59/324 (18%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD--------- 309
I E + TG +S+ E + DE+ +++S F V+GIGP TA+ LY +G RTL+
Sbjct: 2 IDEFLKTGSISESEKIKADERFQSLSAFSSVYGIGPNTARGLYARGLRTLEHLERYYEVW 61
Query: 310 -----------DLKNEDSL------------------THSQRLGLKYFDDIKTRIPRHEV 340
D K +D + T R L Y +D+ +IPR EV
Sbjct: 62 EDPQVAATSQRDAKTDDDVKDVKPVVIEEADVRGEGGTTLIRAALGYREDLAIKIPRDEV 121
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
E++ RL+ EEV + + G YRRGK D+D+V HPD++ KG K VK+L
Sbjct: 122 EEIGRLMAAELEEVEKGCVSIIVGGYRRGKPESNDVDIVFTHPDKEKEKGLCKKLVKRLI 181
Query: 401 EMKFL---------REDLIFSTHSEEGTDSGVDTYF---------GLCTYPGRELRHRID 442
E + RE TH + + + + G LR RID
Sbjct: 182 ERGLVTHVIHQSSFREHNALRTHHWDSLEKALTVFVHPPGSSYARAHVDKHGHRLRRRID 241
Query: 443 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
+IY ++ WTG+ V R LRL A K + G+F AT + ++
Sbjct: 242 LIFAQPEIYWTAVVGWTGSTVFERDLRLWA--KNEKRVTCGIFDATRSLTRTRRRDSKM- 298
Query: 503 LKFDTEKEVFDFLGFPWLEPHERN 526
+ TEKEVFD +G PW++P RN
Sbjct: 299 MYAQTEKEVFDIMGLPWIDPTLRN 322
>gi|242007334|ref|XP_002424496.1| DNA polymerase beta, putative [Pediculus humanus corporis]
gi|212507914|gb|EEB11758.1| DNA polymerase beta, putative [Pediculus humanus corporis]
Length = 316
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 156/313 (49%), Gaps = 46/313 (14%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y +A + P KI S + LPGIGKS+ I + TGKL KLE +K+EK I
Sbjct: 39 AYRRAAFALANYPKKISSGREALKLPGIGKSIASKIDIYLKTGKLPKLEKIKKNEKFAAI 98
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
L +V GIGP+ A++L +G R+L DL K + LT QR+GLKYF D +IPR E+
Sbjct: 99 QLLTKVSGIGPSKARELVAQGIRSLKDLNKIKHKLTKHQRIGLKYFHDFLLKIPRSEISI 158
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD-----RKS----HKGFLS 393
+E+ L++ +EV D ++ HP+ RKS H L
Sbjct: 159 IEKTLKEEIKEV--------------------DNRYIVTHPNYTLNVRKSASSHHGSMLK 198
Query: 394 KYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAF 453
V+KL++ +DL+ T + G + G+ R+D ++ P D Y
Sbjct: 199 TVVEKLRD-----DDLVTDTIA-----LGNTKFMGVYKLDEGSPARRLDIRMTPHDQYFC 248
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 513
++ +TG+D+ NR +R A +GY L++ L P T K GV + +E+++F
Sbjct: 249 SILYFTGSDLFNRNMRAHALQQGYTLNEYSLRPIT-----KTGVPG-DPVPITSERDIFA 302
Query: 514 FLGFPWLEPHERN 526
++ +P+ P ER+
Sbjct: 303 YINYPYKPPSERD 315
>gi|395501816|ref|XP_003755286.1| PREDICTED: DNA nucleotidylexotransferase [Sarcophilus harrisii]
Length = 517
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 179/399 (44%), Gaps = 55/399 (13%)
Query: 173 STASASPDFSSH--HITDPSLLYNPP----------DLNKNITEIFGKLINIYRALGEDR 220
S ASA+PD + I P++ P + N+ T+ F L Y
Sbjct: 128 SIASANPDPNEGMLKIQSPAMNAISPYACQRRTTLNNHNQRFTDAFEILAKNYEFRENHG 187
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
++ +A V++ LPF I S +GLP IG ++ ++EI+ G+ +++ DE+
Sbjct: 188 HCLTFLRATSVLKCLPFAIVSMKDAEGLPWIGDEVKGIMEEIIEDGQSLEVQAVLNDERY 247
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRH 338
+ LF V+G+G TA+K Y G RTL ++++ SL T Q+ G Y++D+ + + +
Sbjct: 248 QAFKLFTSVFGVGLKTAEKWYRMGFRTLSKIQSDKSLKFTKMQKAGFLYYEDLISCVSKA 307
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP-DRKSHKGFLSKYVK 397
E + + ++++A LP+ +I G +RRGK D+D +I P K L + V
Sbjct: 308 EADAVSLIVKEAVWTFLPDALITITGGFRRGKEFGHDVDFLITSPGGEKEQVDQLLQKVT 367
Query: 398 KLKE----------MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-------- 439
L E M+ EDL + + D + L Y R R
Sbjct: 368 NLWEKQGLLLYYDLMESTFEDLKLPSRKVDALDHFQKCFLILKLYCQRGDRSKWEGPEGS 427
Query: 440 -----------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 487
R+D V P D YA+ L+ W+G+ R LR A K LD+ L+
Sbjct: 428 NGLQTKNWKAIRVDLVVCPYDRYAYALLGWSGSRQFERDLRRYATHEKKMMLDNHALYDK 487
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
T RT LK ++E+E+F LG ++EP ERN
Sbjct: 488 T----------KRTFLKAESEEEIFSHLGLEYIEPWERN 516
>gi|20067675|emb|CAD29079.1| chimeric DNA-directed DNA polymerase bf4-1 [synthetic construct]
Length = 325
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 178/341 (52%), Gaps = 39/341 (11%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHE--VEQMERLLQKAGEEVLPEVI---ILCGGSYRRGK 370
L H QR+GLKYF+D + R+ + + V + L L +++ I+ GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREE 190
Query: 371 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
D+D++I+ P++K L K+V L ++F+ + L G + G+C
Sbjct: 191 KMLNDVDLLIIVPEKK-----LLKHV--LPNIRFITDTL----------SKGETKFMGVC 233
Query: 431 TYPG----RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
P E H RID ++ + + + +TG R+R + G+ +++ +
Sbjct: 234 QLPSENDENEYPHRRIDIRLIAEE-KPYAIFHFTGPVSYLIRIR---AALGFTINEYTIR 289
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
P G GV A L D+E+++FD++ + + EP +R+
Sbjct: 290 PL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 324
>gi|296488366|tpg|DAA30479.1| TPA: DNA-directed DNA polymerase mu [Bos taurus]
Length = 473
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 23/309 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL---------REDLIFSTHSEEGTDSGVDTYFG 428
+I HP G L + + LK+ + + DL +H+ + + F
Sbjct: 329 FLITHPQEGQEAGLLPRVMCYLKKQGLVLYHQHQHSQQGDLTQQSHTMDAFERSF-CIFR 387
Query: 429 LCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKG 476
L PG + R+D V P + F L+ WTG+ R LR + + +G
Sbjct: 388 LPQPPGAAVGGAQKPCYAWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKERG 447
Query: 477 YRLDDTGLF 485
L+ GLF
Sbjct: 448 LCLNSHGLF 456
>gi|320166711|gb|EFW43610.1| hypothetical protein CAOG_01654 [Capsaspora owczarzaki ATCC 30864]
Length = 852
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 147/636 (23%), Positives = 263/636 (41%), Gaps = 117/636 (18%)
Query: 3 PKTTRKPTPALD--SNGIFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEK-LSKKV 58
P KP+ A+ ++ IF G+R F++ G + +R + K+V G T L +
Sbjct: 221 PTVDVKPSVAVPVVAHQIFTGVRAFVLASGTISQQRKALLESKIVHAGGTTSVCILPQST 280
Query: 59 THV-----LAMD--LEALLQQS-----------------VIRYQWLEDSLRLGEKVSEDL 94
TH+ L+ D + A+ Q S V+ W+ +SL G ++ ++
Sbjct: 281 THIIVGSDLSYDRLVNAIAQFSPSTKVKLEVPASHAAPLVLSADWVTNSLVRGRRLPDED 340
Query: 95 YRIKLDPEGENIADRVLSQIQGNGNTSSDGESSH-----------RKKIKSSTEDVEHFQ 143
+ I+ P LS++ + S ES+ + ++ +E +
Sbjct: 341 FVIRTGP-----TTSALSRVPNPSSQESSTESASPHSPLPTAAACKAASPAAPSSLEWLE 395
Query: 144 AESKGDVE--------TNAL--------------SEAPNSPMSSE-SLTNTLSTASASPD 180
++S+ ++ T+A SE P + E S T+ +++ +
Sbjct: 396 SDSENGIDLVSDEFDSTSAAHPPAAFTTFRPSRKSEVPPAMRHREVSSTDDADSSAEDTN 455
Query: 181 FSSHHITDPSLLYNPP----DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
S+ ++P + P N +IT+ + + Y G++ R+ + +++ VI LP
Sbjct: 456 ASASPFSNPKYVCFLPVPRQHSNMHITDQLACIEDFYFLSGDESRALAMRRSLCVIAALP 515
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
++ ++ L +G+S + ++EI+ G+ + D K T+ F ++G G
Sbjct: 516 RRLTRIQDIQSLHNMGQSSRAIVKEILDKGRSTAATCMANDPKYTTMLQFRSIYGCGQRI 575
Query: 297 AQKLYEKGHRTLDDLKNEDSLT-----HSQRL--GLKYFDDIKTRIPRHEVEQMERLLQK 349
AQ LYE+G+RT+ ++ + S ++RL GL ++ +++PR EV+Q+ + K
Sbjct: 576 AQALYERGYRTIAEICADRSWVADFPLSAERLEWGLTLHTELGSQVPRDEVKQLGDCVYK 635
Query: 350 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS----------HKGFLSKYVKKL 399
+LP V++ GG YRRGK + D D + H D + V
Sbjct: 636 YANTILPGVMMTIGGGYRRGKPASKDCDFIFTHNDSDAIEFLLPQLLLQLQVAGLVVHAN 695
Query: 400 KEMKFLREDLIFSTHSEEGTD-------SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYA 452
++ + I + H +D D F + P L RID PR YA
Sbjct: 696 TQVGHNTPERIINYHYPIISDFTHRPLLDCTDRSFTIFKSPVSGLHRRIDIICVPRTQYA 755
Query: 453 FGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQ---------------- 495
+ ++AWTG+ NR LRL AE + G+ L GL SG +
Sbjct: 756 YTVLAWTGSKQFNRSLRLYAERELGWTLSSHGLLQIYSESGDSEQQQQQHQHHQQKSEQL 815
Query: 496 -----GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G + TE++VF L P+LEP +RN
Sbjct: 816 GRTHNGKQVSFVPPVLTERQVFAQLKVPYLEPWQRN 851
>gi|58271038|ref|XP_572675.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228934|gb|AAW45368.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 695
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 23/263 (8%)
Query: 274 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIK 332
+E +E R ++LF +++G+G A +LY G RT+ DL+ L+ Q++GL ++D++
Sbjct: 443 YEDNEHARCVALFKDIYGVGRQYANELYRMGARTITDLRTGRFPLSTGQQIGLALYEDLR 502
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR--KSHKG 390
+RIPR E +Q+ L++ + V ++ + GSYRRG + GD+D++I D KSHKG
Sbjct: 503 SRIPREECKQIYELIKLEAKTVDEKLWVEIMGSYRRGSETSGDVDILITRDDADGKSHKG 562
Query: 391 FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDI 450
+ K V KLK + +L + H ++ + G+ + RID P +
Sbjct: 563 AIKKLVDKLKAKGVITHEL-SAPHDWNALEA---KWMGVGRVGQSAMYRRIDILCVPYES 618
Query: 451 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF----- 505
+ LI +TGN++ NR LRL A GY L+ GL+ + VRAR K
Sbjct: 619 WGASLIYFTGNELFNRSLRLYARRLGYNLNQRGLY--------RNVVRARDGTKVLEGDR 670
Query: 506 ---DTEKEVFDFLGFPWLEPHER 525
TE+ +F LG W PH R
Sbjct: 671 VASRTEEGIFQELGLRWRHPHHR 693
>gi|321261910|ref|XP_003195674.1| hypothetical protein CGB_H2300W [Cryptococcus gattii WM276]
gi|317462148|gb|ADV23887.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 690
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 23/263 (8%)
Query: 274 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIK 332
+E +E R I++F +++G+G A +LY G RT+ DL+ L+ Q++GL ++D++
Sbjct: 438 YEDNEHARCIAVFKDIYGVGRQYANELYRMGARTITDLRTGRFPLSPGQQIGLALYEDLR 497
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR--KSHKG 390
+RIPR E Q+ L++ + V ++ + GSYRRG S GD+D++I D K+HKG
Sbjct: 498 SRIPREECRQIFELIKLEAKTVDEKLWVEIMGSYRRGSESSGDVDILITRDDTDGKTHKG 557
Query: 391 FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDI 450
+ + V KLK + +L + H ++ + G+ + RID P +
Sbjct: 558 AIKELVDKLKAKGVITHEL-SAPHDWNALEA---KWMGVGRVGQSAIYRRIDILCVPYES 613
Query: 451 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF----- 505
+ LI +TGN++ NR LRL A GY L+ GL+ + VRAR K
Sbjct: 614 WGASLIYFTGNELFNRSLRLYARKLGYSLNQRGLY--------RNVVRARDGTKVLEGDR 665
Query: 506 ---DTEKEVFDFLGFPWLEPHER 525
TE+E+F LG W PH R
Sbjct: 666 VASRTEEEIFHELGLRWRHPHHR 688
>gi|74136105|ref|NP_001027915.1| terminal deoxynucleotidyl transferase [Takifugu rubripes]
gi|38603668|dbj|BAD02935.1| terminal deoxynucleotidyl transferase [Takifugu rubripes]
Length = 498
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 36/356 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y D R ++ +A V++ LP + S ++ LP +G +
Sbjct: 152 NYNVVFTDAFEVLAECYEFNQMDGRCLAFRRAASVLKSLPRGLSSLEETHSLPCLGGHAK 211
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I EI+ G+ +E DE+ +T+ LF V+G+GP TA+K Y G R+LD + + S
Sbjct: 212 AIIGEILQHGRAFDVEKVLSDERYQTLKLFTSVYGVGPKTAEKWYRSGLRSLDHILADQS 271
Query: 317 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L H Q+ G ++ DI + + E + + + + + + P+ ++ G +RRGK
Sbjct: 272 IQLNHMQQNGFLHYGDISRAVSKAEARALTKAIGETVQAITPDALLALTGGFRRGKEFGH 331
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE--------DLI-FSTHSEEGTDSGVDT 425
D+D++ + + L +K L++ L DL THS E D
Sbjct: 332 DVDIIFTTLELGMEENLLLAVIKSLEKQGILLYCDYQASTFDLTKLPTHSFEAMDHFAKC 391
Query: 426 YFGL----------CTYPGRELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
+ L P ++R R+D P D YAF L+ WTG+ R LR
Sbjct: 392 FLILRLEASQVEEGLNSPVEDIRGWRAVRVDLVSPPVDRYAFALLGWTGSRQFERDLRRF 451
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + + LD+ GL+ T L TEK++FD LG ++EP +RN
Sbjct: 452 ARKERRMLLDNHGLYDKT----------KEEFLAAGTEKDIFDHLGLEYMEPWQRN 497
>gi|332239611|ref|XP_003268994.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Nomascus leucogenys]
Length = 522
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 167/351 (47%), Gaps = 33/351 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ L + + Q++GLP +G+
Sbjct: 181 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALASPVTTLSQLQGLPHLGEHSSRV 240
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSL 317
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ L
Sbjct: 241 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLRQQPQKL 300
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL++ D+ T + R +V+ +++ +++A + LP + G +RRGK D+D
Sbjct: 301 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 360
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT----DSGVDTY------F 427
+I HP G L + ++ L++ + +H E T S +D + F
Sbjct: 361 FLITHPKEGQEAGLLPRVMRCLQDQGLILYHQHQHSHLESPTRLAQQSHMDAFERSFCIF 420
Query: 428 GLCTYPGREL-----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 475
L PG + R+D V P + F L+ WTG+ + R LR + + K
Sbjct: 421 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPISQFPFALLGWTGSKLFQRELRRFSRKEK 480
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G L+ GLF +T +E+++F LG +L P +RN
Sbjct: 481 GLWLNSHGLF----------DPEQKTFFHAASEEDIFRHLGLEYLPPEQRN 521
>gi|357289932|gb|AET73245.1| DNA ligase [Phaeocystis globosa virus 12T]
gi|357292352|gb|AET73688.1| DNA ligase [Phaeocystis globosa virus 14T]
Length = 1093
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 168/328 (51%), Gaps = 43/328 (13%)
Query: 225 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE--------K 276
Y +A+ I+ L ++ SAD +KGL GIGK++ D + E + TG++ LE + +
Sbjct: 68 YREAVEQIKNLNGEVNSADDIKGLSGIGKAITDKLTEFINTGQVKNLEKLKSEYNTEDYE 127
Query: 277 DEKVRTI--SLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDS----------LTHSQ 321
+EK++ +F ++ GIG A A+KL + G T+++L KNE+ L +Q
Sbjct: 128 NEKIKQAKKDIFLQIHGIGDAAAEKLIDLGITTIEELKARKNEEIPGKGTKKLKLLNATQ 187
Query: 322 RLGLKYFDDIKTRIPRHEVEQ----MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
+ GL+Y+++I +IPR E+E+ +E+L +A + + GSYRRGK GD+D
Sbjct: 188 QKGLEYYEEILEKIPRAEIEEYKTTIEKLFNEATDNNTEDNKFEIVGSYRRGKQESGDID 247
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGREL 437
++I + + K K++ LKE ++ +F + E+ + +
Sbjct: 248 IIITS--KVNDKTSFDKFLDLLKEKDIIK---VFLSRGEKKS-------MVISKLNSEST 295
Query: 438 RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
R+DF P + YAF ++ +TG+ N +R+LA L++ G G +
Sbjct: 296 ARRLDFLYTPPEEYAFAILYFTGSKDFNTGMRMLALKNNLTLNEHGFHTMKDKIKGDK-- 353
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHER 525
TS +F+TE+++F +L + EPHER
Sbjct: 354 --ITSPEFNTEEDIFKYLNMEFKEPHER 379
>gi|452000344|gb|EMD92805.1| hypothetical protein COCHEDRAFT_1193188 [Cochliobolus
heterostrophus C5]
Length = 658
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 161/359 (44%), Gaps = 44/359 (12%)
Query: 208 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 266
K I R L ED +Y I I P+K+ ++ LPG + E TG
Sbjct: 300 KKIRTNRILIEDEIGVRAYSTIIAAIAAYPYKLSHPREIAQLPGCDEKTAVLFVEWKNTG 359
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRL 323
K+ ++E E DE ++ + F ++WG+G TA+ Y H T LDD+ + L Q++
Sbjct: 360 KIKEVEDCENDEAMKVLRSFYDIWGVGAKTARHFYYDNHWTELDDIIEHGWNDLDRVQQI 419
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 382
G+KY+++ + IPR EVE + +++ ++ E I I G YRRGK+ GD+D+++ H
Sbjct: 420 GIKYYEEFQEPIPRAEVEHIAAVVRDHAVKLRDEHISITIVGGYRRGKSVSGDVDIIVSH 479
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFST------------HSEEGTDSGVDT----- 425
P+ +S G + + V+ L++ +++ L S S +G G DT
Sbjct: 480 PELESTAGLVQEIVESLEDAQWITHTLTMSLANTKRGQHTLPFRSAKGAGVGFDTLDKAL 539
Query: 426 -YFGLCTYPGRE-------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
+ +P RE + R+D V P ++ W+G R LR
Sbjct: 540 VVWQDPAWPTREGDLERNPRAKNPAIHRRVDIIVAPWRTVGCAVMGWSGGTTFQRDLRRY 599
Query: 472 AES-KGYRLDDTGLFPATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A+ KG++ D +G+ G G GV D EK VF LG ++ P R
Sbjct: 600 AKHVKGWKFDSSGIRSRANGEAIMIEGPDGVEGTPE---DAEKAVFKGLGLEYIPPEYR 655
>gi|348504248|ref|XP_003439674.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Oreochromis
niloticus]
Length = 498
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 165/358 (46%), Gaps = 40/358 (11%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N N+T+ L ED R ++ +A +++ LP ++ S Q++GLP +G+
Sbjct: 150 NSNLTDALSLLAENAELSNEDGRGVAFRRAAALLKALPTQVISMSQLRGLPCLGEHSLRV 209
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
I++++ G S++E ++ ++ + + + ++G+G TA + +G L+ L++ +L
Sbjct: 210 IKDVLENGVSSEVESTKQSKRYKALKILTGIFGVGAKTADRWIREGIYNLEQLRDSGQTL 269
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
+Q+ GL+++DD+ + + E + + ++QKA VLP + G +RRGK + D+D
Sbjct: 270 NRAQKAGLEHYDDLNEPVTKAEADAIGEIVQKAVNSVLPGSEVALTGGFRRGKLTGHDVD 329
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEEGTDSGVDTY----- 426
+I HP+ G + K V L+ FL R + S S +D +
Sbjct: 330 FLITHPEEGKEVGLMPKVVAWLESQGFLLYQKTTRNSYLESKDGPARPASNMDRFERCFS 389
Query: 427 -FGLCTYPGRELRH----------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
F L +E H R+D V P +AF ++ WTG+ + R LR
Sbjct: 390 IFKLTKRKEQESTHKNYQMEAASHKIWRAVRVDLVVSPISQFAFAVLGWTGSKLFERELR 449
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A K L LF T L+ +E+E+F +LG ++ P ERN
Sbjct: 450 RWAGHEKNMSLSSHALFDNTQNK----------YLRATSEEEIFAYLGLEYIPPSERN 497
>gi|348688553|gb|EGZ28367.1| hypothetical protein PHYSODRAFT_309246 [Phytophthora sojae]
Length = 475
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 128/206 (62%), Gaps = 4/206 (1%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+LN ++T+ +++ + R + Y K + ++ + ++ S K + + ++
Sbjct: 254 NLNAHLTDPLEEMMEFLDVEKDIWRQYMYKKVVSSLKAMRHRVCSVKDFKDMHWVKGRLR 313
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
D + EI+ TG+L+KLE +K+ ++R + +WG+GP TA KLY +G+++++DL+ ++
Sbjct: 314 DKVIEILETGRLAKLEAKKKNPRLRALVEIARIWGVGPVTAAKLYGQGYKSVEDLRKPEA 373
Query: 317 ---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
LT Q++G+K+++D+ T+IPR EV+Q+E+++ +++P I L GSYRRGK S
Sbjct: 374 AAVLTAQQQIGVKHYEDLLTKIPRAEVQQIEQIVVDEVHKLMPNAIALACGSYRRGKLSS 433
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKL 399
GD DV++ PD +S+ L + +K+L
Sbjct: 434 GDCDVLVTDPDAESY-DILPQLLKRL 458
>gi|226290277|gb|EEH45761.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb18]
Length = 599
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI +++ Y + + R+ +Y +AI + K KI + DQ +P IG+ +
Sbjct: 387 NARTIEILQQMLEYYNRISDRWRTLAYRRAISALRKQKHKIVTKDQALAIPCIGEQLASK 446
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV T +L +LE + + + +S F ++G+G A K +KG+++L+DLK++ SLT
Sbjct: 447 IEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKWIQKGYQSLEDLKSKASLT 506
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++++DD RIPR EVE ++++A V P V + GGSYRRG +S GD+D+
Sbjct: 507 KNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQVFIGGSYRRGASSSGDIDL 566
Query: 379 VI 380
+I
Sbjct: 567 LI 568
>gi|452843899|gb|EME45834.1| hypothetical protein DOTSEDRAFT_71509 [Dothistroma septosporum
NZE10]
Length = 718
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 170/350 (48%), Gaps = 51/350 (14%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y I + P+KI ++ LPG + + + E +G + +E DE ++ +
Sbjct: 369 AYSTFIASLRAYPYKISHPKELLRLPGCEQKLANLWVEWKNSGTIKAVEELRADEDLKHL 428
Query: 284 SLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
LF ++WG+G TA++ Y EKG R LDD+ +L+ Q++G+K++D+ + IPR EV
Sbjct: 429 RLFYDIWGVGATTAREFYFEKGWRELDDIIEYGWKTLSRVQQIGVKFYDEFQDLIPRAEV 488
Query: 341 EQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E + ++++ +V + I I+ G YRRGK + GD+DV++ HP+ + ++K V L
Sbjct: 489 ESICEVIRQHAVKVCDDGIKIMIVGGYRRGKEASGDVDVIVSHPEHDKTQNLVNKIVDSL 548
Query: 400 KEMKFLREDLIFSTHSE-----------EGTDSGVDT------YFGLCTYPGRE------ 436
+E +++ L S ++ +G G DT + YP ++
Sbjct: 549 EEAEYITHVLTVSENASKRGQETLPFRADGGGHGFDTLDKALVVWQDPDYPNKDTIRAEN 608
Query: 437 -------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGL---- 484
+ R+D + P ++ W+G R LR A+++ G++ D +G+
Sbjct: 609 TSAKNPNIHRRVDIILTPWKTVGCAVVGWSGGTTFERDLRRYAKNQMGWKFDSSGVRDRG 668
Query: 485 ---------FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
F + G+ G++G RA+T + E+ VF+ G + EP ER
Sbjct: 669 NGEVVDIEGFMSWKGNEGEEG-RAKTME--EAERRVFEGFGLEYREPWER 715
>gi|225682831|gb|EEH21115.1| DNA polymerase lambda [Paracoccidioides brasiliensis Pb03]
Length = 351
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N EI +++ Y + + R+ +Y +AI + K KI + DQ +P IG+ +
Sbjct: 139 NARTIEILQQMLEYYNRISDRWRTLAYRRAISALRKQKHKIVTKDQALAIPCIGEQLASK 198
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I+EIV T +L +LE + + + +S F ++G+G A K +KG+++L+DLK++ SLT
Sbjct: 199 IEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKWIQKGYQSLEDLKSKASLT 258
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+G++++DD RIPR EVE ++++A V P V + GGSYRRG +S GD+D+
Sbjct: 259 KNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQVFIGGSYRRGASSSGDIDL 318
Query: 379 VI 380
+I
Sbjct: 319 LI 320
>gi|62414130|ref|NP_001014817.1| DNA nucleotidylexotransferase [Danio rerio]
gi|46369889|gb|AAS89780.1| terminal deoxynucleotidyl transferase [Danio rerio]
Length = 487
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 130/528 (24%), Positives = 223/528 (42%), Gaps = 84/528 (15%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQSVIRYQ 78
F+ + +FLVEK + R G V++ LS VTHV++ E L Q + +
Sbjct: 23 FSDVTLFLVEKRMGKSRRTFLSSLARSKGFCVDDALSGAVTHVVS---EGLSAQDL--WL 77
Query: 79 WLEDSLRLGEKVSEDLYRIKLDPEG--ENIADRVLSQIQGNGNTSSDGESSHRKKIKSST 136
WLED +G E + VL N + ++ S+ R T
Sbjct: 78 WLED-------------------QGFQETHSKHVL-----NISWFTESMSAGRPLPVEDT 113
Query: 137 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPP 196
+++ A+ + V +A E+ SP + + T +H
Sbjct: 114 HCIQNPAADQRSCVHLSATPESAVSPYACQRRTT----------LENH------------ 151
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
NK TE L G + +A V++ LP + S ++ LP +G + +
Sbjct: 152 --NKIFTEALEVLALNSEFSGNQGSCLGFRRAASVLKSLPAALRSPEEALRLPCLGDNSR 209
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
++EI G S++E + D++ RT+ LF V+G+GP TA+ + +G +T + + E S
Sbjct: 210 AVLEEICECGSSSRVEEIQNDQRYRTMKLFCSVFGVGPKTAESWFCRGLKTFEQVLTEPS 269
Query: 317 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L Q G +++DI + R E ++ ++++A + P + G +RRGK
Sbjct: 270 IRLNRMQTAGFLFYEDISVPVSRAEAAALKMMMEEALLFINPSATVTITGGFRRGKEFGH 329
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK-FLREDLIFST--------HSEEGTDSGVDT 425
D+D +I P+ + + L +K+ K L D ST H E D
Sbjct: 330 DVDFIIKAPEGQEDR-ILPAVIKRFKSQNVLLYSDFQKSTFDLRQLPNHRFEAMDRFSKC 388
Query: 426 YFGLC-----TYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYR 478
+ + + GR R R+D P + + + L+ WTG+ + R LR A +G
Sbjct: 389 FLLVKLQMQESRTGRNWRAVRVDLVAPPLERFPYALLGWTGSTLFERDLRRFARLERGKL 448
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LD+ L+ T +T L +TE+++F LG ++EP +RN
Sbjct: 449 LDNHTLYDKT----------TKTFLPANTEEDIFQHLGLEYIEPWQRN 486
>gi|354471127|ref|XP_003497795.1| PREDICTED: DNA nucleotidylexotransferase [Cricetulus griseus]
Length = 510
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 170/358 (47%), Gaps = 39/358 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N+ T+ F L Y + ++ +A V+ LPF I S +G+P +G ++
Sbjct: 163 NCNQLFTDAFDILAENYEFRENEGSCVAFMRAAAVLRSLPFPIISVKDTEGIPCLGDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+ I+ G+ S++ DE+ ++ LF V+G+G TA+K + G RTL +K+++S
Sbjct: 223 CIIEGIIEDGESSEVIAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDES 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTRMQKAGFLYYEDLVSCVNRAEAEAINVLVKEAVAVFLPDALVTMTGGFRRGKMTGH 342
Query: 375 DLDVVIMHP--DRKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P + + L K ++ L DLI ST + S VD +F
Sbjct: 343 DVDFLITSPGATEEEEQQLLHKVTDLWRQQGLLLYCDLIESTFEKFKLPSRKVDALDHFQ 402
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P D AF L+ WTG+ R LR
Sbjct: 403 KC-FLILKLYHQRVGSDESSQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLR 461
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R L+ D+E+E+F LG ++EP ERN
Sbjct: 462 RYATHERKMMLDNHALYDKT----------KRVFLEADSEEEIFAHLGLDYIEPWERN 509
>gi|156048408|ref|XP_001590171.1| hypothetical protein SS1G_08935 [Sclerotinia sclerotiorum 1980]
gi|154693332|gb|EDN93070.1| hypothetical protein SS1G_08935 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 940
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 128/510 (25%), Positives = 217/510 (42%), Gaps = 83/510 (16%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLY------RIKLDPE--GENIADRVLSQIQGNGNTSSDGE 125
V+ W DS+R G+ + D Y RI P+ +I R + I+ N +
Sbjct: 450 VLNKDWYFDSVREGKLLPMDNYLIYEGRRIMEPPKILSSDILTRAAADIKSYPNPKYNHY 509
Query: 126 SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHH 185
H++ K T Q S+ D + + P E L S +P
Sbjct: 510 YRHQQSSKPLTRPTLLTQTTSEHD-------DPEHYPPLPEYLITHYSCERPTP------ 556
Query: 186 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQ 244
+T P+ + +T++ + I + R L D+ +Y AI I P+ + S ++
Sbjct: 557 LTSPN--------DDFLTQL--QSIKLKRTLDGDQIGVRAYSTAIASIAAYPYVLTSPNE 606
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK- 303
V LPG + + + + TG + ++ F+ + ++ + LF +WG G ATA+ Y+K
Sbjct: 607 VIRLPGCDQKIANLFLQYQNTGTIDEVVEFQNNPRMEVLRLFHNIWGAGDATARDFYDKR 666
Query: 304 GHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 361
G R LDD+ D LT Q++G+KY+D+ IPR EVE++ ++ ++ ++
Sbjct: 667 GWRDLDDVIEYGWDKLTRVQQIGVKYYDEFLLPIPRAEVEEISFIVLTEARKIDEGYQMV 726
Query: 362 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
G YRRGK +CGD+D+++ HPD K F+S+ ++L+++ ++ L+ ST + E
Sbjct: 727 IVGGYRRGKENCGDVDLILTHPDEKFTFNFVSRLTERLEDVGWITNILLKSTRNSERGQH 786
Query: 422 GVD--------TYFGL----------------------------CTYPGR----ELRHRI 441
VD ++ G T P + + R+
Sbjct: 787 AVDLSRAEGERSHGGFDTLDKALVVWQDINFPQPSQSPSQPSRSQTKPPKIKNPNIHRRV 846
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLR-LLAESKGYRLDDTGLFPATYG-----SGGKQ 495
D + P +I W+G R LR E K +R D +G+ G G +
Sbjct: 847 DIIISPWKTAGAAIIGWSGGTTFQRDLRKYFKEKKNWRFDSSGIRDRRTGEWIDLEGCVE 906
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G L+ + E VF +G W EP ER
Sbjct: 907 G-SGEGKLR-EKEMAVFRGVGLQWREPWER 934
>gi|432092624|gb|ELK25159.1| DNA-directed DNA/RNA polymerase mu [Myotis davidii]
Length = 459
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 36/335 (10%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G + R S+ +A V++ LP + + Q++GLP G+ IQE++ G ++E ++
Sbjct: 135 GSEGRLLSFSRAASVLKALPCPVTALSQLQGLPHFGEHSCRVIQELLEHGVCEEVERVQR 194
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRI 335
E+ +++ LF ++G+G TA + Y +G RTLDD++ + LT Q+ GL+++ D+ + +
Sbjct: 195 SERYQSMKLFTRIFGVGVRTADQWYREGLRTLDDVRKQVQRLTQQQKAGLEHYQDLSSPV 254
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
R + E + ++++ A LP + G +RRGK D+D +I HP+ G L +
Sbjct: 255 QRPDAEALRQVVEAAVGWALPGATVTLAGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRV 314
Query: 396 VKKLKEMKFL------------REDLIFSTHSEEGTDSGVDTYFGLCTYPGRE------- 436
+ L++ + L+ HS + + F L PG
Sbjct: 315 MHYLEQQGLVLYQQHQRSPSGDPARLVLKGHSMDTFEQSF-CIFRLPRPPGTAKGGTWSP 373
Query: 437 ----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGS 491
R+D V P + F L+ WTG+ R LR + + +G L+ GLF
Sbjct: 374 HPSWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKERGLWLNSCGLF------ 427
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
T E+++F LG +L P +RN
Sbjct: 428 ----DPEQETFFHAAAEEDIFRRLGLAYLPPEQRN 458
>gi|336372511|gb|EGO00850.1| hypothetical protein SERLA73DRAFT_50337 [Serpula lacrymans var.
lacrymans S7.3]
Length = 584
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/507 (24%), Positives = 213/507 (42%), Gaps = 87/507 (17%)
Query: 64 MDLEALLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 123
+D E ++++ QWLEDS++ G + P G+ A VL + +
Sbjct: 118 VDWELAKSKAIVTPQWLEDSVKYGRPM----------PCGDYAALNVL-------HDETV 160
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSS 183
E R S + + S+ + + E P LT+T S
Sbjct: 161 HECPDRPSCNSGSPEPGPSHTSSRSPSTSKQIPEDAPQPADISLLTHT----------SR 210
Query: 184 HHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD 243
+ S L P N+ + + K+ GE+R SY +AI V P I ++
Sbjct: 211 YCCCRASPLVCP---NQGLIKQLDKIKEARNLEGEERSMLSYARAISV-SPFPHVITHSN 266
Query: 244 ---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
++ LP +G+ + ++E + TG++++ + + + +S F + GIGP TA+KL
Sbjct: 267 LKREISKLPYLGEKLLSMVEEFIKTGQINETQGILTSSRFQALSAFTTIHGIGPHTARKL 326
Query: 301 YEKGHRTLDDLK-------------------------NEDSLTHSQRLGLKYFDDIKTRI 335
Y G RTL+DL+ +E + S ++ L D I
Sbjct: 327 YNLGLRTLEDLERYYEVEPGRCGQETLAVIEAAGRESDEAIVERSIKVALALRHDFSQTI 386
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH----KGF 391
PR EVE+M R++ E++ + G YRRGK D+D+VI H + +S KG
Sbjct: 387 PRAEVEEMNRVVMSELEQIEQGCKSIVVGGYRRGKPQSNDVDIVISHRNWESGAGKIKGL 446
Query: 392 LSKYVKKLKEMKFLREDLIFSTHSEEGT------DSGVDTYFGLCTYPG----RELRHRI 441
++V++L E + + S E DS ++ + PG R + R+
Sbjct: 447 CKRFVRRLHERGLVTHVMHLSGFHEHNALRTHHWDS-LEKALTVFVLPGDGSQRRVYRRL 505
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRAR 500
D ++ ++ WTG+ + R LRL A + KG++ D +G+ R
Sbjct: 506 DLIFAAPQVFWTAVVGWTGSTMFQRDLRLYAKQQKGFKFDSSGI-----------SRRHD 554
Query: 501 TSLKF-DTEKEVFDFLGFPWLEPHERN 526
+ L F TE+EVF+ LG ++ P RN
Sbjct: 555 SKLFFPKTEREVFELLGLVYVHPTLRN 581
>gi|224052619|ref|XP_002191940.1| PREDICTED: DNA nucleotidylexotransferase [Taeniopygia guttata]
Length = 505
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 189/395 (47%), Gaps = 39/395 (9%)
Query: 155 LSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYR 214
+ ++P+ P+++ L A+ +S T + + NK T+ F + Y
Sbjct: 126 MEQSPSPPLNTPELEMPALIATKVSQYSCQRKTTLN------NYNKKFTDAFEVMAENYE 179
Query: 215 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
+ S + +A +++ LPF + S ++GLP +G ++D I+EI+ G+ S+++
Sbjct: 180 FKENEIFSLEFLRAASLLKSLPFSVTSMKDIQGLPCVGDQVRDIIEEIIEEGESSRVKEV 239
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIK 332
DE+ + F V+G+G T++K Y G RT++++K E +L S Q+ G+ Y++D+
Sbjct: 240 LNDERYKAFKQFTSVFGVGVKTSEKWYRMGLRTVEEVKAEKTLKLSKMQKAGILYYEDLV 299
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP-----DRKS 387
+ + + E + + +++ LP+ ++ G +RRGK D+D +I +P D
Sbjct: 300 SCVSKAEADAVSLIVKNTVCTFLPDALVTITGGFRRGKNIGHDIDFLITNPGPREDDELL 359
Query: 388 HKGFL-------SKYVK-KLKEMK------FLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
HKG L S +VK KL K F + I + +S +T L
Sbjct: 360 HKGLLLYCDIIESTFVKEKLPSRKVDAMDHFQKCFAILKLYQPRVDNSTCNTSKKLEMAE 419
Query: 434 GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGS 491
++ + R+D + P + Y++ L+ WTG+ R L R A + LD+ L+
Sbjct: 420 VKDWKAIRVDLVITPFEQYSYALLGWTGSRQFGRDLRRYAAHERKMILDNHALYDR---- 475
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R R LK +E+E+F LG ++EP ERN
Sbjct: 476 ------RKRIFLKAGSEEEIFAHLGLDYVEPWERN 504
>gi|451850321|gb|EMD63623.1| hypothetical protein COCSADRAFT_37397 [Cochliobolus sativus ND90Pr]
Length = 706
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 160/359 (44%), Gaps = 44/359 (12%)
Query: 208 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 266
K I R L ED +Y I I P+K+ ++ LPG + E TG
Sbjct: 348 KKIRTNRVLIEDEIGVRAYSTIIAAIAAYPYKLSHPREIAQLPGCDEKTAVLFVEWKNTG 407
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRL 323
K+ ++E +E DE ++ + F ++WG+G TA+ Y H T LDD+ + L Q++
Sbjct: 408 KIKEVEDYENDEAMKVLRTFYDIWGVGAKTARHFYYDNHWTELDDIIEHGWNDLDRVQQI 467
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 382
G KY+++ + I R EVE + +++ ++ E I + G YRRGK+ GD+D+++ H
Sbjct: 468 GAKYYEEFQEPIQRAEVEHIVAVVRDHAAKLRDERISVTIVGGYRRGKSVSGDVDIIVSH 527
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFST------------HSEEGTDSGVDT----- 425
P+ +S G + + V+ L++ +++ L S S +G G DT
Sbjct: 528 PELESTAGLVQEIVESLEDAQWITHTLTMSLANTKRGQHTLPFRSAKGAGVGFDTLDKAL 587
Query: 426 -YFGLCTYPGRE-------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
+ +P RE + R+D V P ++ W+G R LR
Sbjct: 588 VVWQNPAWPTREGDLERNPRAKNPAIHRRVDIIVAPWRTVGCAVMGWSGGTTFQRDLRRY 647
Query: 472 AES-KGYRLDDTGLFPATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A+ KG++ D +G+ G G GV D EK VF LG ++ P R
Sbjct: 648 AKHVKGWKFDSSGIRSRANGEAIMIEGPDGVEGTPE---DAEKAVFKGLGLEYIPPEYR 703
>gi|255720340|ref|XP_002556450.1| KLTH0H13662p [Lachancea thermotolerans]
gi|238942416|emb|CAR30588.1| KLTH0H13662p [Lachancea thermotolerans CBS 6340]
Length = 558
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 172/384 (44%), Gaps = 60/384 (15%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
++N N+ + +L + G+ RS SY A+ I+K I S + LP IG S+
Sbjct: 178 EINANLIQFLEQLSAKFHRQGDKFRSRSYQLALQSIKKHGKPITSEEGALSLPNIGPSIA 237
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-LKNED 315
I+ ++ G L L+ + E++ + F +G+G TA+K + G RT D LK
Sbjct: 238 SKIKLVLDVGSLPGLQLSTEREEL--LEYFMNCYGVGSHTARKWADGGARTFKDALKLFP 295
Query: 316 S-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
S + S G KY+DD RIPR E Q ++++ + V P+ I+ GSYRRG A+CG
Sbjct: 296 SDFSWSILFGWKYYDDWTQRIPRQECAQHLKIVESVLQNVDPQARIVITGSYRRGAATCG 355
Query: 375 DLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTH---------SEEGTDSG 422
D+D+V+ D S L V KL E ++ L + H +E +G
Sbjct: 356 DIDMVLYKQDCDSFDELSQILETVVLKLSETGYIVCPLNLNQHILHAMKPCINEVAEAAG 415
Query: 423 VDT-------------YFG------------LCTYPGR--------------ELRHRIDF 443
+D+ YFG L +Y R R+D
Sbjct: 416 LDSYSVTSFKGVLHKFYFGGRITDGQKTTSPLASYSSRLKEADQFLSGSCLENKCRRVDI 475
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
+ +I +TGND N+ LRL A +G++L + GL+ A G + T L
Sbjct: 476 LLCRWAQLGGTMIYFTGNDDFNKSLRLRATKRGWKLSNNGLYQAAQVPG-----QGDTLL 530
Query: 504 KFDTEKEVFDFLGFPWLEPHERNL 527
+ +E+ + + LG PW+ P +RN+
Sbjct: 531 EAFSERRIMELLGVPWVPPEQRNI 554
>gi|326437287|gb|EGD82857.1| DNA polymerase beta, variant [Salpingoeca sp. ATCC 50818]
Length = 259
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 131/255 (51%), Gaps = 34/255 (13%)
Query: 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
V G GPA A+K ++G TL++L + LT +QR+GLK+ D + RIPR EV+++ +
Sbjct: 21 VVGFGPAAARKFVDQGVTTLEELAKQSGLTSTQRIGLKHHHDFEERIPRDEVDRLRKQAF 80
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS-HK------------GFLSKY 395
EV P++ GSYRRG +S GD+D+++ HP+ S HK G L+K
Sbjct: 81 AIISEVDPKLTAEVCGSYRRGASSSGDIDILMTHPEFTSEHKDEKGKITKPRFAGLLAKV 140
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC-----TYPGRELRHRIDFKVYPRDI 450
V +++ KF+ + L G + G+C G RID + +P D
Sbjct: 141 VAAMQKHKFVTDSL----------SCGQTKFMGVCRDREAPKAGEGKYRRIDVRFWPADQ 190
Query: 451 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 510
Y L+ +TG+D LN+ +R A G+ L++ + P G G G +L EK+
Sbjct: 191 YPLALLYFTGSDELNKDMRRKAIDLGFHLNEYAIRP--MGEKGTMG----DALPVTCEKD 244
Query: 511 VFDFLGFPWLEPHER 525
VFD+L +LEP ER
Sbjct: 245 VFDYLDMKYLEPSER 259
>gi|311271684|ref|XP_003133204.1| PREDICTED: DNA nucleotidylexotransferase-like [Sus scrofa]
Length = 510
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 39/358 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNHIFTDAFEVLAENYEFRENETFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T+++ + G R+L ++++ +
Sbjct: 223 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSERWFRMGFRSLSKIRSDKT 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRK--SHKGFLSKYVKKL-KEMKFLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P + L K V +E L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTDDEEQQLLPKVVNLWEREGLLLYCDLVESTLEKSKLPSRNVDALDHFQ 402
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P ++ AF L+ WTG+ R LR
Sbjct: 403 KC-FLILKLHHQRVDSGMSSQQEGKTWKAIRVDLVMCPYELRAFALLGWTGSRQFERDLR 461
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG +LEP ERN
Sbjct: 462 RYATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYLEPWERN 509
>gi|444708211|gb|ELW49303.1| DNA nucleotidylexotransferase [Tupaia chinensis]
Length = 536
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 177/375 (47%), Gaps = 46/375 (12%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N+ T+ F L Y + S + +A V+ LPF I S +GLP +G ++
Sbjct: 162 NCNRVFTDAFETLAENYEFRENEDSSVIFLRAASVLRSLPFTITSMRDTEGLPCLGDKVK 221
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 222 CVIEEIIEDGESSEVNAVLNDERYKSFKLFTSVFGVGLKTSEKWFRMGFRTLSRVRSDKS 281
Query: 317 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
LT Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 282 LHLTRMQQAGFLYYEDLASCVTRAEAEAVGVLVKEAVGAFLPDALVTITGGFRRGKKTGH 341
Query: 375 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P + + L + V L E K L DL+ ST + T S VD +F
Sbjct: 342 DVDFLITSPGSTEEKEEELLQKVLNLWEKKGLLLYYDLVESTFEKLKTPSRKVDALDHFP 401
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P + +AF L+ WTG+ R LR
Sbjct: 402 KC-FLILKLHHQRVDGDKPSQQEGKSWKAIRVDLVMCPYERHAFALLGWTGSRQFERDLR 460
Query: 470 LLA-ESKGYRLDDTGLFPAT-YGSGGKQGVRA----------------RTSLKFDTEKEV 511
A + LD+ L+ T + G V R LK ++E+++
Sbjct: 461 RYATHERKMMLDNHALYDKTKFCEGYLHCVHTEMLRKVPECLPFLCFQRVFLKAESEEDI 520
Query: 512 FDFLGFPWLEPHERN 526
F LG ++EP ERN
Sbjct: 521 FAHLGLDYIEPWERN 535
>gi|194226389|ref|XP_001489108.2| PREDICTED: DNA polymerase beta-like isoform 1 [Equus caballus]
Length = 227
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 25/224 (11%)
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
KNED L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG
Sbjct: 19 KNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAE 78
Query: 372 SCGDLDVVIMHPDRKS----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYF 427
S GD+DV++ HP S L + V++L+++ F+ + L G +
Sbjct: 79 SSGDMDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFM 128
Query: 428 GLCTYP----GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482
G+C P G+E H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++
Sbjct: 129 GVCQLPSKNDGKERPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEY 188
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ P G GV A L D+EK++FD++ + + EP +R+
Sbjct: 189 TIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 226
>gi|33860211|sp|O57486.2|TDT_AMBME RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|28852989|gb|AAB92673.2| matrice independent polymerase [Ambystoma mexicanum]
Length = 510
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 169/361 (46%), Gaps = 43/361 (11%)
Query: 199 NKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
NKN T+ F L Y +R S+ +A V++ L F I V GLPG G ++
Sbjct: 159 NKNTLFTDAFEILAENYEFRENERSCLSFRQAASVLKSLTFTIAGMADVDGLPGFGDHIR 218
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I++++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++
Sbjct: 219 AVIEDLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNEN 278
Query: 317 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L S Q GL++++DI + + E + + +++ A LP+ ++ G +RRG +
Sbjct: 279 LKFSKMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGH 338
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF-STHSEEGTDS---GVDTYFGLC 430
D+D++I P + K L K + K+ L I ST E+ S + +F C
Sbjct: 339 DVDMLITSPIQGKEKELLHKVINLWKKQDLLLCHTIHESTMDEDNLPSKSVNLLDHFQKC 398
Query: 431 TYPGRELRH------------------------RIDFKVYPRDIYAFGLIAWTGNDVLNR 466
+ +H R+D P + YAF L+ WTG+ R
Sbjct: 399 FAILKSNQHRGEISSCDGPHDSRERGKRIWKAIRVDLVFCPFEQYAFALLGWTGSRQFER 458
Query: 467 RLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
LR A K +D+ L+ T R +K ++E+E+F LG +++P ER
Sbjct: 459 DLRRYASHEKKMMIDNHALYDKT----------KRVFVKCESEEEIFGHLGLEYIDPVER 508
Query: 526 N 526
N
Sbjct: 509 N 509
>gi|295669724|ref|XP_002795410.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285344|gb|EEH40910.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 412
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
FS H D + P N EI ++ Y + R+ +Y KAI + K KI
Sbjct: 184 FSCMHKHDGHTDRDNP--NARTIEILLQMSEYYDRNSDRWRTLAYRKAISALRKRKHKIV 241
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
+ DQ +P IG+ + I+EIV T +L +LE + + + +S F ++G+G A K
Sbjct: 242 TKDQALAIPCIGERLASKIEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKW 301
Query: 301 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
+KG+++L+DLK++ SLT +QR+G++++DD RIPR EVE ++++A V P V +
Sbjct: 302 IQKGYQSLEDLKSKASLTKNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQV 361
Query: 361 LCGGSYRRGKASCGDLDVVI 380
GGSYRRG +S GD+D++I
Sbjct: 362 FVGGSYRRGASSSGDIDLII 381
>gi|60223047|ref|NP_001012479.1| DNA nucleotidylexotransferase [Rattus norvegicus]
gi|59809178|gb|AAH89904.1| Deoxynucleotidyltransferase, terminal [Rattus norvegicus]
Length = 510
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 171/355 (48%), Gaps = 37/355 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ T+ F L Y + + +A V++ L F I S ++G+P +G ++
Sbjct: 165 NQLFTDAFDILAENYEFRENEVSCLPFMRAASVLKSLSFPIVSMKDIEGIPCLGDKVKCV 224
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 317
I+ I+ G+ S+++ DE+ ++ LF V+G+G TA+K + G RTL +K++ SL
Sbjct: 225 IEGIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDKSLR 284
Query: 318 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
TH Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK + D+
Sbjct: 285 FTHMQKAGFLYYEDLVSCVNRAEAEAVSMLVKEAVVAFLPDALVTMTGGFRRGKMTGHDV 344
Query: 377 DVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFGLC 430
D +I P+ + + L K ++ L D+I ST + S VD +F C
Sbjct: 345 DFLITSPEATEEEEQQLLHKVTNFWRQQGLLLYCDIIESTFEKFKLPSRKVDALDHFQKC 404
Query: 431 -----------------TYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
G++ + R+D + P + AF L+ WTG+ R LR A
Sbjct: 405 FLILKLHRGLVRSEESGQQEGKDWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRRYA 464
Query: 473 -ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 465 THERKMMLDNHALYDKT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 509
>gi|407917656|gb|EKG10960.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 675
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 175/384 (45%), Gaps = 59/384 (15%)
Query: 194 NPPDLNKNITEIFGKL--INIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 250
NPP+ G+L I + R L G++ +Y AI + P+++ ++ LPG
Sbjct: 296 NPPN-----AAFIGQLKEIRLTRTLTGDEVGVRAYSTAIAALAAYPYRLSHPKEILRLPG 350
Query: 251 IGKSMQDHIQEIVTTG---KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK-LYEKGHR 306
+ + E G + + DE + + +F ++WG+G TA+ L++KG R
Sbjct: 351 CDTKIANLWIEWKNAGDEATIPAVAAARADETLAILRIFYDIWGVGATTARDFLFDKGWR 410
Query: 307 TLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIIL 361
LDD+ SLT Q++G+KY+DD + IPR EVE++ ++ V E + L
Sbjct: 411 DLDDVVEYGWTSSLTRVQQIGVKYYDDFRHGIPRREVERIATVIHAHAVRVRDEGATVAL 470
Query: 362 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
GG YRRGK + GD+D+++ H D ++ + ++ V L+ ++ L+ S H+ S
Sbjct: 471 VGG-YRRGKDAPGDVDLIVSHRDLRATENLVTDLVASLEGEGWITHTLLLSLHNTHRGQS 529
Query: 422 ----------------GVDT------YFGLCTYPGRE-------------LRHRIDFKVY 446
G DT + +PGRE + R+D +
Sbjct: 530 VLPYKAAATAAGPKSVGFDTLDKALVVWQDPEWPGREEDLARDPKATNPNVHRRVDIIIS 589
Query: 447 PRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGS----GGKQGVRART 501
P + W+G R LR A++ KG++ D +G+ G G +GV
Sbjct: 590 PWRTVGCAIAGWSGGTTFQRDLRRYAKNVKGWKFDSSGVRDRRTGEVVQLEGPEGVGEGL 649
Query: 502 SLKFDTEKEVFDFLGFPWLEPHER 525
+ D EK+VF+ +G PW++P +R
Sbjct: 650 GWE-DAEKKVFEGMGLPWIKPEDR 672
>gi|190339956|gb|AAI63775.1| Dntt protein [Danio rerio]
Length = 486
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 132/528 (25%), Positives = 223/528 (42%), Gaps = 85/528 (16%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQSVIRYQ 78
F+ + +FLVEK + R G V++ LS VTHV++ E L Q + +
Sbjct: 23 FSDVTLFLVEKRMGKSRRTFLSSLARSKGFCVDDALSGAVTHVVS---EGLSAQDL--WL 77
Query: 79 WLEDSLRLGEKVSEDLYRIKLDPEG--ENIADRVLSQIQGNGNTSSDGESSHRKKIKSST 136
WLED +G E + VL N + ++ S+ R T
Sbjct: 78 WLED-------------------QGFQETHSKHVL-----NISWFTESMSAGRPLPVEDT 113
Query: 137 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPP 196
+++ A+ + V +A E+ SP + + T +H
Sbjct: 114 HCIQNPAADQRSCVHLSATPESAVSPYACQRRTT----------LENH------------ 151
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
NK TE L G + +A V++ LP + S ++ LP +G + +
Sbjct: 152 --NKIFTEALEVLALNSEFSGNQGSCLGFRRAASVLKSLPAALRSPEEALRLPCLGDNSR 209
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
++EI G S++E + D++ RT+ LF V+G+GP TA+ + + RT + + E S
Sbjct: 210 AVLEEICECGSSSRVEEIQNDQRYRTMKLFCSVFGVGPKTAESWFCRELRTFEQVLTEPS 269
Query: 317 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L Q G +++DI + R E ++ ++++A + P + G +RRGK
Sbjct: 270 IRLNRMQTAGFLFYEDISVPVSRAEAAALKMMMEEALLFINPSATVTITGGFRRGKEFGH 329
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK-FLREDLIFST--------HSEEGTDSGVDT 425
D+D +I P+ + + L +K+ K L D ST H E D
Sbjct: 330 DVDFIIKAPEGQEDR-ILPAVIKRFKSQNVLLYSDFQKSTFDLRQLPNHRFEAMDRFSKC 388
Query: 426 YF--GLCTYPGRELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYR 478
+ L T R R+ R+D V P + + + L+ WTG+ + R LR A +G
Sbjct: 389 FLLVKLQTQESRTGRNWRAVRVDL-VAPLERFPYALLGWTGSTLFERDLRRFARLERGKL 447
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LD+ L+ T +T L +TE+++F LG ++EP +RN
Sbjct: 448 LDNHTLYDKT----------TKTFLPANTEEDIFQHLGLEYIEPWQRN 485
>gi|338716705|ref|XP_001501812.3| PREDICTED: DNA nucleotidylexotransferase [Equus caballus]
Length = 508
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 171/358 (47%), Gaps = 40/358 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N+ T+ F L Y + ++ +A V++ LPF I S ++G+P + +
Sbjct: 162 NCNQVFTDAFDVLAENYEFRENESSCLTFMRAASVLKSLPFTIISMKDIEGIPCLEDKAK 221
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ +
Sbjct: 222 CVIEEIIEDGESSEVKTVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKT 281
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTKMQKAGFLYYEDLVSCVTRPEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 341
Query: 375 DLDVVIMHP--DRKSHKGFLSKYVK--KLKEMKFLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + LSK + + KE+ L DL+ ST + S VD +F
Sbjct: 342 DVDFLITSPGSTEEEEQELLSKVINLWERKEL-LLYYDLVESTFEKSKLPSRKVDALDHF 400
Query: 428 GLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
C + +L H R+D V P + +AF L+ WTG+
Sbjct: 401 QKC-FLILKLHHQRVDSGKSSQQEGKTWKAIRVDLVVCPYENHAFALLGWTGSRFERDLR 459
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 460 RYATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 507
>gi|189206734|ref|XP_001939701.1| DNA polymerase beta [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975794|gb|EDU42420.1| DNA polymerase beta [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 661
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 177/394 (44%), Gaps = 44/394 (11%)
Query: 173 STASASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 231
S A P++ + + + P + N++ E K+ + +D +Y I
Sbjct: 268 SDIPAPPEWVKNCVKYACQRFTPANGPNEDFLEQLKKIRTARTLIDDDIGVRAYSTIIAS 327
Query: 232 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 291
I P+K+ ++ LPG + E TGK+ +E +E DE ++ + F +WG
Sbjct: 328 IAAYPYKLSHPRELARLPGCDEKTVALFVEWKNTGKIQAVEDYENDEAMKVLRCFYNIWG 387
Query: 292 IGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
+G T + Y H + LDD+ + L Q++G+KY+++ IPR EVE++ +++
Sbjct: 388 VGAKTTRHFYYNNHWKELDDIVEYGWNDLKRVQQIGVKYYEEFLLPIPRDEVERIAAVVR 447
Query: 349 KAGEEVLPE-VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 407
+ + + V + G YRRGK GD+D+++ HPD +S G + + V+ L+E +++
Sbjct: 448 EHAVRLRDDRVTVTLVGGYRRGKTESGDVDMIVSHPDLESTAGLVQEIVESLEETEWITH 507
Query: 408 DLIFS-THSEEGTD-----------SGVDT------YFGLCTYPGRE------------- 436
L S T + G +G DT + T+P RE
Sbjct: 508 TLTMSLTSTNRGQQVLPFRSTRVAGAGFDTLDKALVVWQDPTWPTREEDLAENPKTKNPA 567
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGS---- 491
+ R+D + P ++ W+G R LR A++ K ++ D +G+ + G
Sbjct: 568 IHRRVDIIIAPWRTVGCAVMGWSGGTTFQRDLRRYAKAVKEWKFDSSGVRSRSTGEVIML 627
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G GV + D EK+VF+ LG ++ P R
Sbjct: 628 EGPNGVDG---MPEDAEKKVFEGLGLEYIPPEYR 658
>gi|449277136|gb|EMC85412.1| DNA nucleotidylexotransferase [Columba livia]
Length = 506
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 166/355 (46%), Gaps = 36/355 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ NK T+ F + Y + S + +A V++ LPF + ++GLP +G ++
Sbjct: 162 NYNKKFTDAFEIMAENYEFKENEIFSLEFQRAASVLKFLPFPVTRMKDIQGLPCMGDRVR 221
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K Y G RTL+++K + +
Sbjct: 222 DVIEEILEEGESSRAKEVLNDERYKSFKQFTSVFGVGVKTSEKWYRMGLRTLEEVKADKT 281
Query: 317 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L+ Q+ G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 282 VKLSKMQKAGFLYYEDLVSCVSKAEADAVNMVVKNTVYTFLPDALVTITGGFRRGKNIGH 341
Query: 375 DLDVVIMHP-----DRKSHKGFLSKYVKKLKEMKFLREDL----------------IFST 413
D+D +I P D HK L Y + E F +E L I
Sbjct: 342 DIDFLITSPGSREDDELLHKIGLLLYC-DIVESTFTKEQLPSRQVDAMDNFQKCFAILKL 400
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
+S +T L + + R+D + P + YA+ L+ WTG+ R LR A
Sbjct: 401 CQPRADNSSDNTSKNLDMAEDKHWKAIRVDLVITPFEQYAYALLGWTGSRQFGRDLRRYA 460
Query: 473 -ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ LD+ L+ T RT LK +E+E+F LG ++EP ERN
Sbjct: 461 THERKMILDNHALYDRT----------KRTFLKAASEEEIFAHLGLDYIEPWERN 505
>gi|384244518|gb|EIE18020.1| hypothetical protein COCSUDRAFT_60646 [Coccomyxa subellipsoidea
C-169]
Length = 702
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 132/270 (48%), Gaps = 28/270 (10%)
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQK 299
+A K + K++ + +VT KL EK EK++ I F EVWG G ATA++
Sbjct: 247 TACSAKAIQRAIKAVVESTSALVTADDCEKLGIGEKSIEKLQEI--FMEVWGTGEATAER 304
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV----- 354
Y G R+L+D++ L+ QR G+KYF+D K RIPR EV M + A EEV
Sbjct: 305 WYRDGCRSLEDVQGRSDLSMQQRTGMKYFEDFKQRIPRSEVAAMGATVCDAAEEVLDCSN 364
Query: 355 LPEV-IILCG--GSYRRGKASCGDLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFLRED 408
LP+ ++ C GSY RGK GD+D++I P + L K L++ L +D
Sbjct: 365 LPDGDLLFCSVLGSYTRGKPLTGDVDMLIAPPPSCGEIDSRQALHAICKCLQKRGLLLDD 424
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+ + + G G T+ G+ + R+D K YPR + F ++ +TG+ +R L
Sbjct: 425 MASTAPAARG--DGAATFMGVARHATSPCARRVDIKFYPRRVLPFAIMHFTGSGAFSRAL 482
Query: 469 RLLAESK------------GYRLDDTGLFP 486
R A S+ G++L D L P
Sbjct: 483 RYWARSRANEARRFQPSANGFKLSDYALVP 512
>gi|431909928|gb|ELK13024.1| DNA polymerase mu [Pteropus alecto]
Length = 515
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 171/397 (43%), Gaps = 69/397 (17%)
Query: 189 PSLLYNPPDLNKNITEIFGKLINIYRAL----------GEDRRSFSYYKAIPVIEKLPFK 238
PSL++ PP + T + ++ AL G + R ++ +A +++ P
Sbjct: 128 PSLVWMPPYACQRPTPLTHHNTSLSEALEMLAEAAGFDGSEGRVLAFSRAASMLKAFPGP 187
Query: 239 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
+ + Q++GLP G+ +QE++ G+ ++E + R++ LF ++G+G TA
Sbjct: 188 VTALSQLQGLPHFGEHSCRVVQELLDRGECVEVERVRLSARYRSMKLFTGIFGVGVRTAD 247
Query: 299 KLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 357
+ Y +G RTLDD++ + LT Q+ GL++ D+ T + R + E ++++++ A E+ LP
Sbjct: 248 RWYREGLRTLDDVRGQVQRLTQQQKAGLRHHADLSTPVQRPDAEALQQVVEAAVEQALPG 307
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ G +RRGK D+D +I HP+ G LS+ + LKE + + +E
Sbjct: 308 ATVTLAGGFRRGKLQGHDVDFLITHPEEGQEVGLLSRVMHSLKEQGLVLYHQHWLPQGQE 367
Query: 418 ---------GTD------------SGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
TD S + G P R + R+D V P + F L
Sbjct: 368 PARPARRSRTTDTLERCFCILRLPSSLGVAVGGALGPCRPWKAVRVDLVVAPISQFPFAL 427
Query: 456 IAWTGNDV-------------------------LNRRLRLLA-ESKGYRLDDTGLFPATY 489
+ WTG+ V R LR + + +G L+ GL+
Sbjct: 428 LGWTGSKVGPVLWGRLVWGRGPANAVASPPPQHFERELRRFSRKERGLWLNSEGLY---- 483
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
T + E+++F LG +L P RN
Sbjct: 484 ------DPEQETFVHLAAEEDIFRHLGLTYLPPQLRN 514
>gi|322709493|gb|EFZ01069.1| terminal deoxynucleotidyl transferase, putative [Metarhizium
anisopliae ARSEF 23]
Length = 604
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 179/388 (46%), Gaps = 48/388 (12%)
Query: 179 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKL 235
P+F +++ P+ L+ PP+ K I E+ K I R L G +Y +I +
Sbjct: 221 PEFLHTTYSCQRPTPLH-PPN-EKFILEL--KKIRTLRLLQGNQIGVRAYSTSIAALSAY 276
Query: 236 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
P I++ ++ LPG + + QE + G+ + D K+ T+ LF ++WG+G
Sbjct: 277 PHVIQN---IERLPGCSTKIAELYQEWLKDGETKETAAAASDAKMSTLMLFYDIWGVGDT 333
Query: 296 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
TA++ Y KG + LDDL SLT Q++G+K++D+ + IPR EVE++ L+ + +
Sbjct: 334 TAREFYNKGWKDLDDLVEYGWSSLTRVQQIGVKFYDEFQQMIPRQEVEEIASLVLQHARK 393
Query: 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFS 412
+ + G YRRGK GD+DV++ H D ++ V L++ + L +++
Sbjct: 394 IEAGFQMAIVGGYRRGKKESGDVDVILSHRDESQTMNMINDLVVSLEQAHLITHTLSLWT 453
Query: 413 THSEEGT------------DSGVDTY-FGLCTY-----PGRELRH-RIDFKVYPRDIYAF 453
+SE G SG DT + + G + H R+D + P
Sbjct: 454 KNSERGQLPLAWRGEGARRGSGFDTLDKAMVVWQDKKKAGDDAPHRRVDIIISPWKTVGC 513
Query: 454 GLIAWTGNDVLNRRL-RLLAESKGYRLDDTGL----------FPATYGSG----GKQGVR 498
L+ W+G R L R + KG + D +G+ F + Y + G G
Sbjct: 514 ALLGWSGGTTFERDLRRYCKQEKGLKFDSSGIRRRSDGTWVDFESHYTASDEGPGHDGRC 573
Query: 499 ARTSLKFDT-EKEVFDFLGFPWLEPHER 525
+ + DT E+ VF+ LG W +P ER
Sbjct: 574 PQLAPDMDTAERRVFEGLGLTWRDPTER 601
>gi|402081123|gb|EJT76268.1| DNA polymerase beta [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 599
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 175/423 (41%), Gaps = 46/423 (10%)
Query: 143 QAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--SSHHITDPSLLYNPPDLNK 200
Q +K T+ S+ P+ S S PDF + + P+ ++ P N+
Sbjct: 180 QPTAKTSTATHRSSQVPSLLRQSTSEHEAARHMPTMPDFLRTVYSCQRPTPIHPP---NE 236
Query: 201 NITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 259
K I R L DR +Y A+ + P+ + S ++V LP G
Sbjct: 237 AFINQLAK-IKTTRLLAGDRIGVRAYSSAMASLAAYPYVLASPEEVDRLPNCGPKFAVLF 295
Query: 260 QEIVTTGK-LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDS 316
QE G + + + E D K+ I F +VWG+G TA+K Y+ G R LDD+ ++
Sbjct: 296 QEFQRQGGVIREAQEAELDPKLSVIKNFYDVWGVGDVTAKKWYDNGWRDLDDVVEYGWET 355
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
LT Q++G+K++D+ +IPR EVE++ + + + ++ G YRRG GD+
Sbjct: 356 LTRDQQIGVKFYDEFLLKIPRDEVEKIADTILEHANRLRNGFQMVIVGGYRRGNKESGDV 415
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST-HSEEG-------------TDSG 422
D+++ HPD + + ++ V L+ ++ L+ ST +SE G SG
Sbjct: 416 DIMLSHPDENATRNLVTHLVVALEGSNYITHTLVLSTKNSERGQVTLSWKGEVNKVPGSG 475
Query: 423 VDTY--------------FGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
T G T R+D V P L+ WT R L
Sbjct: 476 YCTLDKALVVWQDPSWAAGGNNTEKNPNPHRRVDIVVTPWKTAGCALLGWTSGTTFQRDL 535
Query: 469 R-LLAESKGYRLDDTGLFPATYG-----SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
R +G + D +G+ T G G+ G A L EK VF L WL P
Sbjct: 536 RNYCKRERGLKFDSSGIRSRTSGRWLDLESGEDGSPAPDMLT--AEKRVFAGLELEWLSP 593
Query: 523 HER 525
ER
Sbjct: 594 EER 596
>gi|449303273|gb|EMC99281.1| hypothetical protein BAUCODRAFT_85556 [Baudoinia compniacensis UAMH
10762]
Length = 716
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 167/364 (45%), Gaps = 47/364 (12%)
Query: 208 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 266
K I + R L D +Y +I + P+KI S ++ LPG + + + E TG
Sbjct: 351 KKIKLARLLTNDEIGVRAYSTSIASLAAYPYKIVSPREIMALPGCDQKIANLFVEWANTG 410
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK--NEDSLTHSQRL 323
+ +E + D+ ++ + LF E+WG+G TA++ Y ++G R LDD+ +LT Q++
Sbjct: 411 TIKAVEDVDADDDLKVLRLFWEIWGVGATTAREFYFDRGWRDLDDIVEFGWSTLTRVQQI 470
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE-VIILCGGSYRRGKASCGDLDVVIMH 382
G+KY+++ IPR EVE++ R++ + +V + V L G YRRGK +CGD+D+++ H
Sbjct: 471 GVKYYEEFLDPIPRAEVEEIGRIIHRHAVKVRDDGVQSLIVGGYRRGKQACGDVDMIVSH 530
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-----------EGTDSGVDTY----- 426
D ++ V L+E ++ L+ S ++ EG G D+
Sbjct: 531 IDEGQTLNIVNDIVASLEEEGWITHTLLLSLNNSNRDQQTLPFRAEGGGHGFDSLDKALV 590
Query: 427 -----------FGLCTYPGRE---LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
L + P + + R+D + P + W+G R LR A
Sbjct: 591 VWQDPDWPTKDADLASNPKSKNPNIHRRVDIIISPWRTVGCAVTGWSGGTTFQRDLRRYA 650
Query: 473 E-SKGYRLDDTGL----------FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
+ + ++ D +G+ YG G+ G R + EK VF+ +G + E
Sbjct: 651 KHAHRWKFDSSGVRDRGNGEVVDVEGYYGYSGRIG-SGRAKTMVEAEKRVFEGMGLVYRE 709
Query: 522 PHER 525
P ER
Sbjct: 710 PSER 713
>gi|396479682|ref|XP_003840813.1| similar to terminal deoxynucleotidyl transferase [Leptosphaeria
maculans JN3]
gi|312217386|emb|CBX97334.1| similar to terminal deoxynucleotidyl transferase [Leptosphaeria
maculans JN3]
Length = 706
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 155/345 (44%), Gaps = 49/345 (14%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y I I P+K+ +V LPG + E TGK+ ++ +E DE ++ +
Sbjct: 365 AYSTIIASIAAYPYKLRHPREVAQLPGCDEKTAVLFVEWKNTGKIQAVQDYEDDEAMKVL 424
Query: 284 SLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
LF +WG+G TA+ Y H T LDD+ D L Q++G+KY D+ IPR EV
Sbjct: 425 RLFYNIWGVGAKTARHFYYNNHWTELDDIIEYGWDDLDRVQQIGVKYCDEFLVPIPRPEV 484
Query: 341 EQMERLLQKAGEEVL----PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
EQ+ +++ E V+ + G YRRGK+ GD+D+++ HP+ G + + V
Sbjct: 485 EQIASVVK---EHVVRLRDDRATVTIVGGYRRGKSESGDVDMIVSHPELDQTAGLIREIV 541
Query: 397 KKLKEMKFLREDLIFS-THSEEGTDS-----------GVDT------YFGLCTYPGRE-- 436
L++ ++ L S T++ G + G DT + ++P RE
Sbjct: 542 DSLEDTGWITHTLTMSLTNTNRGQQALPFRSSKRAGVGFDTLDKALVVWQDPSWPTREED 601
Query: 437 -----------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGL 484
+ R+D + P ++ W+G R LR A++ K ++ D +G+
Sbjct: 602 LARDPNAKNPAIHRRVDIIIAPWRTVGCAVMGWSGGTTFQRDLRRYAKAIKSWKFDSSGV 661
Query: 485 FPATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ G G+ G+ + D EK VF LG ++ P R
Sbjct: 662 RSRSTGEAVWLEGENGIEGTPA---DAEKMVFQGLGLEFIPPEYR 703
>gi|353237319|emb|CCA69295.1| hypothetical protein PIIN_03194 [Piriformospora indica DSM 11827]
Length = 400
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 170/364 (46%), Gaps = 37/364 (10%)
Query: 194 NPPDLNKNITEIFGKLINIY--RALGEDRRSF---SYYKAIPVIEKLPFKIESADQVKGL 248
NP D+N + +L N Y A+G +R + ++ +A+ I +I+S + V L
Sbjct: 35 NPDDVN---YPLLNRLYNEYLEYAVGPERNVYKLKAFSQAMKAIASKSSRIQSLEDVAEL 91
Query: 249 PGIGKSMQDHIQEIVTT------GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302
PGIG ++ I+E + + ++ + + E + +F + GIGP A+ L E
Sbjct: 92 PGIGTGIRRRIEEYLLSEAEGGSNDITSKKSANQKEMLEACKVFQRISGIGPKKARVLAE 151
Query: 303 KGHRTLDDLKNE----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 358
+G R+LDDL N+ + L + + GL+Y I RI R +++ + + KA LPE
Sbjct: 152 QGFRSLDDLLNDKKTFERLPKAIQTGLRYNSKIDQRIQRDQIDTLSTRIIKA----LPEF 207
Query: 359 IILCGGSYRRGKASCGDLDVVIMHPD------RKSHKGFLSKYVKKLKEMKFLRE---DL 409
+ GSYRRG S D+D+++ HP R ++ K +KE L+ L
Sbjct: 208 EVYVTGSYRRGAPSSSDIDILLFHPSMVEARLRSVKAPTKAQSEKAMKESALLKSAVPAL 267
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELR-HRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+ + E G + GL PG E R RID + P L+ TG+ N+ L
Sbjct: 268 VKAKILGEPLTVGPAKWQGLANLPGTEGRLGRIDLNLMPLQSRGAALVGHTGDADFNQYL 327
Query: 469 RLLAESKGYRLDDTGLF--PATYGSGGKQGVRARTSLKF---DTEKEVFDFLGFPWLEPH 523
R A RL+D GL+ P + K + + +TEK+VFD LG W+EP
Sbjct: 328 RNKALKMLMRLNDYGLWKRPELWRMNEKTDTKDDDEWELVPTETEKDVFDALGEGWVEPE 387
Query: 524 ERNL 527
+RN
Sbjct: 388 KRNF 391
>gi|428178310|gb|EKX47186.1| hypothetical protein GUITHDRAFT_52423, partial [Guillardia theta
CCMP2712]
Length = 274
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 140/272 (51%), Gaps = 20/272 (7%)
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
+ IQE+ TG+++KLE + + ++ + VWG+G A++L G R++++LK + +
Sbjct: 4 EKIQELFDTGRIAKLETMKSNPNLKILQELKNVWGVGDTLARRLIAAGIRSVEELKGKTT 63
Query: 317 L----------THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGS 365
+ TH R+G+++ +DI T++PR EV +E+ +++ + V + ++ GS
Sbjct: 64 VGEGARQVHLPTHV-RIGVEHNEDINTKMPRREVAALEQAIRQHAQRVGGATVEVIACGS 122
Query: 366 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFSTHSEEGTDSGVD 424
YRRGK GD+D ++ D G + V+KL E D+ S S G
Sbjct: 123 YRRGKQESGDIDCLLTRKD----GGCGVEVVEKLMEELQSEFDVKTLSLPSRSANHDGCC 178
Query: 425 TYFGLCTYPGRELR-HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
+ G+ G E R R D K YP D F L+ TG+D NR +RLLA+ KG L D G
Sbjct: 179 NWMGILRRKGTEGRWRRFDVKSYPIDQVPFALLHMTGSDHFNRSMRLLAKKKGLSLSDHG 238
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
++ T GG++ K EK+VFD L
Sbjct: 239 IYRVT--RGGEEEENFSLPFKCTREKDVFDIL 268
>gi|403417391|emb|CCM04091.1| predicted protein [Fibroporia radiculosa]
Length = 771
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 120/202 (59%), Gaps = 10/202 (4%)
Query: 198 LNKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 254
+N+++ + +L+ I++A + R FSY KAI + P +I S ++ + + G+G
Sbjct: 525 INQDVIDKLEELMEIHKAKPSEEDHWRVFSYGKAIRALRSHPTRIRSFEEARTVRGVGDK 584
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314
I EI+ TG L ++ +E+ + V IS+ ++G+G A K Y G RTLDD++
Sbjct: 585 TARKIMEILETGDLRRIA-YERTDDVGAISILQGIYGVGRNIAHKWYANGCRTLDDVQAR 643
Query: 315 D---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-AGEEVLPEVIILCGGSYRRGK 370
+LT +Q GLKY+DDI +R+PR+E ++ +++ A ++ P++ I GSYRRGK
Sbjct: 644 IGGITLTSAQETGLKYYDDINSRMPRNEAAEIFTMIKAVAALDIDPKLFIEIMGSYRRGK 703
Query: 371 ASCGDLDVVIMHP--DRKSHKG 390
A CGD+D++I P D K+H G
Sbjct: 704 ADCGDIDILITRPTDDGKTHHG 725
>gi|389623977|ref|XP_003709642.1| DNA polymerase beta [Magnaporthe oryzae 70-15]
gi|351649171|gb|EHA57030.1| DNA polymerase beta [Magnaporthe oryzae 70-15]
gi|440474906|gb|ELQ43621.1| DNA polymerase beta [Magnaporthe oryzae Y34]
gi|440487441|gb|ELQ67230.1| DNA polymerase beta [Magnaporthe oryzae P131]
Length = 582
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/498 (25%), Positives = 209/498 (41%), Gaps = 71/498 (14%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR----VLSQIQGN----------GN 119
V + W DS+ GE + D Y + +G N+ ++QI + G
Sbjct: 109 VAKLAWFTDSIAKGEVLPIDDYVVY---QGINLGREEPFPPINQIAASFKEGAAAKQAGT 165
Query: 120 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP 179
S+ S +++ V H ES T+ A N P L + S +P
Sbjct: 166 GSAHSMPSFKRRRGQPQSYVPHLMPES-----TSEHDAAENLPPIPSFLHSVYSCQRPTP 220
Query: 180 DFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFK 238
NPP N E K I R L D +Y AI + P+
Sbjct: 221 -------------ANPP--NSAFIEQL-KEIRTTRLLNGDSIGVRAYSTAIASLAAYPYG 264
Query: 239 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
+ + +V+ LPG + + QE TGK+ ++E +D +++ + F WG+G TA+
Sbjct: 265 LTTHIEVQRLPGCNEKIAFLYQEWKHTGKIKEVEEATQDPRLKILREFHATWGVGDTTAR 324
Query: 299 KLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
+ Y KG R LDD+ +SLT Q++G+KY+D+++ +I R EVE++ ++ + ++
Sbjct: 325 EWYNKGWRDLDDVVEYGWESLTRVQQIGVKYYDELQLKISREEVEKIANIILQHANKIRS 384
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST-HS 415
++ G YRRGK GD+D+++ HPD + F++ V L + ++ L ++ +S
Sbjct: 385 GFQMVIVGGYRRGKDESGDVDLILSHPDESATDRFVTMLVDSLSDSDYVTHTLSYTVKNS 444
Query: 416 EEGTD-------------SGVDTY-FGLCTY----PGRELR---HR-IDFKVYPRDIYAF 453
E G SG DT L + PG + HR +D + P
Sbjct: 445 ERGQKPVAWKGSAPKPHGSGFDTLDKALVVWQEPKPGAKKNPNPHRQVDIIISPWKTAGC 504
Query: 454 GLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSG----GKQGVRARTSLKFDTE 508
++ WT R +R + K + D +G+ G + GV A E
Sbjct: 505 AVLGWTSGTTFQRDMRKYCKEKLNLKFDSSGIRSRADGRWVDLESRDGVPAPD--MHTAE 562
Query: 509 KEVFDFLGFPWLEPHERN 526
+ VF+ L W P ERN
Sbjct: 563 RRVFEGLKLEWRPPTERN 580
>gi|112734841|ref|NP_001036693.1| DNA nucleotidylexotransferase isoform 2 [Mus musculus]
gi|12802443|gb|AAK07885.1|AF316015_1 terminal deoxynucleotidyl transferase short isoform [Mus musculus]
gi|74137150|dbj|BAE21978.1| unnamed protein product [Mus musculus]
Length = 510
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 43/358 (12%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 375 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P+ + L K K+ L D++ ST + S VD +F
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P D AF L+ WTG+ R LR
Sbjct: 403 KC-FLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLR 461
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 462 RYATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 509
>gi|410975770|ref|XP_003994302.1| PREDICTED: DNA nucleotidylexotransferase [Felis catus]
Length = 543
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 173/359 (48%), Gaps = 41/359 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + S ++ +A V++ LPF I S +G+P +G ++
Sbjct: 196 NFNHIFTDAFEVLAENYEFKENEISSATFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 255
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 256 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 315
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 316 LKFTQMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 375
Query: 375 DLDVVIMHPDR--KSHKGFLSKYVK--KLKEMKFLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + L K + + KE+ L DL+ ST + S VD +F
Sbjct: 376 DVDFLITIPGSTDEEEEQLLPKVINLWQRKEL-LLYYDLVESTFEKLKLPSRKVDALDHF 434
Query: 428 GLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
C + +L H R+D + P + AF L+ WTG+ R L
Sbjct: 435 QKC-FLILKLHHQRVDSGKCSQQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDL 493
Query: 469 RLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R A + LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 494 RRYATHERKMILDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 542
>gi|25187910|emb|CAA48634.2| deoxynucleotidyltransferase [Mus musculus]
Length = 510
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 43/358 (12%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 375 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P+ + L K K+ L D++ ST + S VD +F
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P D AF L+ WTG+ R LR
Sbjct: 403 KC-FLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLR 461
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 462 RYATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 509
>gi|154332625|ref|XP_001562129.1| mitochondrial DNA polymerase beta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059577|emb|CAM37159.1| mitochondrial DNA polymerase beta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 376
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 174/377 (46%), Gaps = 58/377 (15%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 255
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K GIG +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGIGAKL 69
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 315 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSISSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 370 KASCGDLDVVIMHP-------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + + G L+ +V+ L+ +K+L E G
Sbjct: 189 HPFSGDVDAILSRTLDAPPLNEPVAATGVLAHFVEFLESIKYL----------EATMAQG 238
Query: 423 VDTYFGLCTYPGRELR-------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
Y G+ P R +R R+D ++ ++ +TG+ N +R
Sbjct: 239 PLKYMGMGRLPPRIVRDKVGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMR 298
Query: 470 LLAESKGYRLDDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEK 509
A SKGY L++ GLF A Y G +G A L + +E+
Sbjct: 299 QAAISKGYLLNEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQ 358
Query: 510 EVFDFLGFPWLEPHERN 526
+VFD LG P+ +P R+
Sbjct: 359 DVFDVLGMPYAKPENRD 375
>gi|281348517|gb|EFB24101.1| hypothetical protein PANDA_005205 [Ailuropoda melanoleuca]
Length = 509
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 171/359 (47%), Gaps = 41/359 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 162 NCNHIFTDAFEVLAENYEFRENEVFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 221
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 222 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 281
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 341
Query: 375 DLDVVIMHPDR--KSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + L K + L E K L D + ST + T S VD +F
Sbjct: 342 DVDFLITSPGSTDEDEEQLLPKVI-NLWERKGLLLYCDFVESTFEKLKTPSRKVDALDHF 400
Query: 428 GLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
C + +L H R+D + P + AF L+ WTG+ R L
Sbjct: 401 QKC-FLILKLHHQRVDSGKCSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDL 459
Query: 469 RLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R A + LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 460 RRYATHERKMMLDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|185132129|ref|NP_001118178.1| DNA nucleotidylexotransferase [Oncorhynchus mykiss]
gi|6094445|sp|Q92089.1|TDT_ONCMY RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|1354475|gb|AAB01980.1| terminal deoxynucleotidyl transferase [Oncorhynchus mykiss]
Length = 501
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 185/411 (45%), Gaps = 51/411 (12%)
Query: 152 TNALSEA-PNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLI 210
T+++ E P + S+ NT + SP + +++ + N N +IF ++
Sbjct: 105 TDSMREGRPVRVETRHSIQNTPTGTDCSPPTAVANVSQYACQRRTTTENHN-NKIFTDVM 163
Query: 211 NIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 266
E S ++ +A V++ LP + ++GLP +G+ + ++EI+T G
Sbjct: 164 EELAESSEFNESKGPCLAFRQAASVLKSLPSAVHCLKAIQGLPCLGEHTKAVMEEILTFG 223
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLG 324
+ K+E DE+ + + LF V+G+GP TA+K Y +G R+L ++ E + L QR G
Sbjct: 224 RSFKVEEIRCDERYQALKLFTSVFGVGPKTAEKWYRRGLRSLQEILTEPNIQLNRMQRAG 283
Query: 325 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 384
Y+ DI + + E + + +++ + P+ I+ G +RRGK D+D ++ P+
Sbjct: 284 FLYYSDISKAVSKAEAKAVGCIIEDTFHWIAPDAILALTGGFRRGKEYGHDVDFLLTMPE 343
Query: 385 RKSHKGFLSKYVKKLKEMKFLR-------------------EDL------IFSTHSEEGT 419
+G L + +LK+ L ED+ E+G
Sbjct: 344 IGKDEGLLLHVIDRLKDQGILLYCDYQGSTFDVSKLPSCRFEDMDCFQKCFLILRLEQGQ 403
Query: 420 DSGVDTYFGLCTYPG--RELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SK 475
V+ GL PG R R R+D P D YAF L+ WTG+ R LR A+ +
Sbjct: 404 ---VEGERGLQRDPGDSRGWRAVRVDLVAPPVDRYAFALLGWTGSR-FGRDLRTFAQKER 459
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LD+ L+ T + L TE+++F LG ++EP +RN
Sbjct: 460 QMLLDNHALYDKT----------KKLCLLATTEEDIFTHLGLEYVEPWQRN 500
>gi|18655690|pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 43/358 (12%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 34 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 93
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 94 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 153
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 154 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 213
Query: 375 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P+ + L K K+ L D++ ST + S VD +F
Sbjct: 214 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 273
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P D AF L+ WTG+ R LR
Sbjct: 274 KC-FLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLR 332
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 333 RYATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 380
>gi|119570152|gb|EAW49767.1| polymerase (DNA directed), lambda, isoform CRA_j [Homo sapiens]
Length = 172
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 2/141 (1%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 33 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 90
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 91 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 150
Query: 360 ILCGGSYRRGKASCGDLDVVI 380
+ GSYRRGKA+CGD+DV+I
Sbjct: 151 CVACGSYRRGKATCGDVDVLI 171
>gi|353236694|emb|CCA68683.1| related to DNA polymerase Tdt-N [Piriformospora indica DSM 11827]
Length = 531
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/424 (25%), Positives = 184/424 (43%), Gaps = 65/424 (15%)
Query: 150 VETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLL------YNPPDLNKNIT 203
V + L + P S S L T ++ + S D + L P + KN +
Sbjct: 125 VAVDGLVPPASVPKPSRSPKKGLGTKNSPIELSDSESFDAAALPRYCCQRQTPLVCKN-S 183
Query: 204 EIFGKLINIYRAL---GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 260
E+ +L I + G+D ++ ++ +AI I+ P KIE+ ++++ LP +GKS + +
Sbjct: 184 ELIAQLAMIRQNRWLEGDDMKALAHSRAIASIKAFPNKIETIEEIEKLPYVGKSTLNRVS 243
Query: 261 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--------- 311
E + G + + H EK+E+ + +S F V+GIGP A+ + +T DL
Sbjct: 244 EFLGRGFIEEARHLEKNERFQVLSDFTTVYGIGPVKARAFLHQNIKTFGDLERYYRRQLM 303
Query: 312 -----KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 366
+N + +S L +D + +I R EVE++ R++ E + P I G Y
Sbjct: 304 SGKDTENAQGMLNS----LAAREDFRVKISRAEVEEVARIIANELEIIQPGFIHTITGGY 359
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT------D 420
RRGK D+D+V H + +G L V +LK + L ++ G+ +
Sbjct: 360 RRGKEESNDIDIVFSHKEIGHGRGALQSLVSRLKAQGIITHTLPATSFRTPGSMKAYTKE 419
Query: 421 SGVDTYFGLCTYPG-------------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
++ + P R+LR R+D P + Y ++ WTG+ + R
Sbjct: 420 KALERALCVIKLPDDSPSFPYNVSGQPRKLR-RLDLIFAPLETYWCAVVGWTGSIMFERD 478
Query: 468 LRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLK---FDTEKEVFDFLGFPWLEPH 523
LR + K Y+ D +GL R+ L+ +E+ +F LG ++ PH
Sbjct: 479 LRSWCKDKLQYKFDSSGLI-------------RRSDLQCIPVHSERHLFQLLGLSYVPPH 525
Query: 524 ERNL 527
RN
Sbjct: 526 LRNC 529
>gi|112734847|ref|NP_033371.2| DNA nucleotidylexotransferase isoform 1 [Mus musculus]
gi|17380506|sp|P09838.3|TDT_MOUSE RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|12802441|gb|AAK07884.1|AF316014_1 terminal deoxynucleotidyl transferase long isoform [Mus musculus]
gi|26352882|dbj|BAC40071.1| unnamed protein product [Mus musculus]
gi|26353776|dbj|BAC40518.1| unnamed protein product [Mus musculus]
gi|148709903|gb|EDL41849.1| deoxynucleotidyltransferase, terminal [Mus musculus]
gi|151556624|gb|AAI48335.1| Deoxynucleotidyltransferase, terminal [synthetic construct]
Length = 530
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 43/368 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 375 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P+ + L K K+ L D++ ST + S VD +F
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P D AF L+ WTG+ R LR
Sbjct: 403 KC-FLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLR 461
Query: 470 LLA-ESKGYRLDDTGLFPATYGSG----------GKQGVRARTSLKFDTEKEVFDFLGFP 518
A + LD+ L+ T G K R L+ ++E+E+F LG
Sbjct: 462 RYATHERKMMLDNHALYDRTKGKTVTISPLDGKVSKLQKALRVFLEAESEEEIFAHLGLD 521
Query: 519 WLEPHERN 526
++EP ERN
Sbjct: 522 YIEPWERN 529
>gi|296220892|ref|XP_002756529.1| PREDICTED: DNA nucleotidylexotransferase [Callithrix jacchus]
Length = 510
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 181/386 (46%), Gaps = 57/386 (14%)
Query: 187 TDPSLLYNPP---------------DLNKNITEIFGKLINIYRALGEDRRS----FSYYK 227
T+P LL PP LN N +IF +I E R + ++ +
Sbjct: 135 TNPGLLKTPPIAVQKISQYACQRRTTLN-NFNQIFTDAFDILAENCEFRENEDSCVTFMR 193
Query: 228 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 287
A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++ LF
Sbjct: 194 AASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEIIEDGESSEVKAVLNDERYQSFKLFT 253
Query: 288 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIKTRIPRHEVEQMER 345
V+G+G T++K + G RTL +++E SLT + QR G Y++D+ + + R E E +
Sbjct: 254 SVFGVGLKTSEKWFRMGFRTLSKVRSEKSLTFTRMQRAGFLYYEDLVSCVTRAEAEAVSV 313
Query: 346 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP-DRKSHKGFLSKYVKKLKEMK- 403
L+++A LP+ I G +RRGK D+D +I P + + L + V L E K
Sbjct: 314 LVKEAVWAFLPDAFITMTGGFRRGKKMGHDVDFLITSPGSTEDEEQQLLQKVMNLWEKKG 373
Query: 404 -FLREDLIFSTHSEEGTDS----GVDTY---FGLCTYPGRELRH--------------RI 441
L DL+ ST + S +D + F + P + L R+
Sbjct: 374 LLLYYDLVESTFEKLRLPSRKVDALDHFQKCFLIFKLPRQRLDSDQPSWQEGKTWKAIRV 433
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRAR 500
D + P + AF L+ WTG+ R LR A + LD+ L+ T R
Sbjct: 434 DLVMCPYERRAFALLGWTGSRQFERDLRRYATHERKMILDNHALYDKT----------KR 483
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHERN 526
LK ++E+E+F LG ++EP ERN
Sbjct: 484 IFLKAESEEEIFTHLGLDYIEPWERN 509
>gi|21465815|pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
gi|21465825|pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 43/358 (12%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 16 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 75
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 76 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 135
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 136 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 195
Query: 375 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P+ + L K K+ L D++ ST + S VD +F
Sbjct: 196 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 255
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P D AF L+ WTG+ R LR
Sbjct: 256 KC-FLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLR 314
Query: 470 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 315 RYATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 362
>gi|392591052|gb|EIW80380.1| Nucleotidyltransferase [Coniophora puteana RWD-64-598 SS2]
Length = 596
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 167/367 (45%), Gaps = 62/367 (16%)
Query: 208 KLINIYRAL-GEDRRSFSYYKAIPVIEKLP--FKIESAD-QVKGLPGIGKSMQDHIQEIV 263
K+I + R L GE+R SY +AI +I+ P +E D +V+ LP +G + I+E V
Sbjct: 241 KIIQLSRKLEGEERSMLSYQRAIAMIKSYPHIITLERLDNEVEDLPYLGTKLVAMIEEYV 300
Query: 264 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------------ 311
T GK+S+ E + + + +S F ++GIGP T ++LY+ G RTL++L
Sbjct: 301 TLGKISEAESIRESSRFQALSAFSRIYGIGPHTGRRLYDLGLRTLEELDRYYEVTPGSTD 360
Query: 312 ------------KNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 358
NE++ L + ++ L D+ I RHE E++ ++L V
Sbjct: 361 GSALSSLELYSKANEETVLEETIKVALALRHDLCQTISRHEAERIGQILDSELAHVEQGC 420
Query: 359 IILCGGSYRRGKASCGDLDVVIMHPD----RKSHKGFLSKYVKKLKEMKFLREDL----- 409
L G YRRGK D+D++I HP+ + + + V+ L+E L +
Sbjct: 421 RTLLVGGYRRGKVQGNDVDILITHPNWTLGSQKSRNMSKRLVQSLRERGILVHVMHLAGF 480
Query: 410 ----IFSTHSEEGTDSG-----VDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTG 460
+ TH + + V + P + ++D +++ ++ WTG
Sbjct: 481 HGHNVLRTHHWDSLEKALTILRVPSAGDAVNAP---VHRQVDLIFAAPEVFWTAVVGWTG 537
Query: 461 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD-TEKEVFDFLGFPW 519
+ + R LRL A+ +G + D +G+ R + L F TE+EVFD L P+
Sbjct: 538 STMFERDLRLWAKERGMKFDSSGI-----------SRRHDSKLFFPRTEREVFDLLELPY 586
Query: 520 LEPHERN 526
+ P RN
Sbjct: 587 IHPALRN 593
>gi|401889239|gb|EJT53177.1| hypothetical protein A1Q1_07852 [Trichosporon asahii var. asahii
CBS 2479]
Length = 821
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 140/259 (54%), Gaps = 29/259 (11%)
Query: 236 PFKIESADQVKGLPGIGKSMQDHIQEIVT-----------TGKLSKLEHFEKDEKVRTIS 284
P +I+S Q++ L +G+SM ++ +V+ TG +L +FE ++ RTI+
Sbjct: 501 PEQIKSGSQIRHLRFVGESMAKRVRLMVSIRLMRQIDEILTGAKGRL-YFEDTDQARTIA 559
Query: 285 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDIKTRIPRHEVEQM 343
F V+G+G A +LY +G R+++DL +D LT Q++G+K +DD+ RIPR E Q+
Sbjct: 560 KFQNVYGVGSRCAHELYSRGARSIEDLATKDFGLTVGQKIGVKLYDDLCARIPREECRQL 619
Query: 344 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYVKKLKE 401
+++ +V + GSYRRG+A+ GD+D++I D K+H+G + K V+ L +
Sbjct: 620 FEIVRDQTLSFDDKVFVEIMGSYRRGEANSGDIDILITRDPSDGKTHQGLIGKVVEALTK 679
Query: 402 MKFLREDLIFSTHSEEGTDSGVD---TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
+F+ TH+ + D T+ G+C P + RID P + L+ +
Sbjct: 680 KEFI-------THALGAPNDWQDLECTWMGVCRLP-NGVHRRIDILSIPWEQKGAALLYF 731
Query: 459 TGNDV---LNRRLRLLAES 474
TGN + L + RLLA+S
Sbjct: 732 TGNAIHASLRAQTRLLAQS 750
>gi|116206616|ref|XP_001229117.1| hypothetical protein CHGG_02601 [Chaetomium globosum CBS 148.51]
gi|88183198|gb|EAQ90666.1| hypothetical protein CHGG_02601 [Chaetomium globosum CBS 148.51]
Length = 596
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 157/368 (42%), Gaps = 48/368 (13%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
+PP N+ E K I R L DR Y P E+L +V LPG G
Sbjct: 238 HPP--NQGFIEELTK-IKTARTLTGDRIGVRAYSKSPTAERL-------TEVARLPGCGS 287
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 311
+ QE TG++ + E D K+ + LF +WG+ TA+ Y +G R LDD+
Sbjct: 288 KIALLFQEFRETGQIREAREDESDPKLAVLKLFYNIWGVAETTARDFYNRGWRDLDDIVE 347
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
++LT Q++G+KY+++++ IPR EVE + ++ ++ P ++ G YRRGK
Sbjct: 348 YGWETLTRVQQIGVKYYEELQLPIPRAEVESIAGVILAHANQIRPGFEMVIVGGYRRGKT 407
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFSTHSEEG------------ 418
+ GD+DVV+ H D + + + V L+ +++ L + +T+SE G
Sbjct: 408 ASGDVDVVLSHRDEHATHDLVGRLVVALERARYITHTLSLATTNSERGQAPVAWKGNASR 467
Query: 419 ----TDSGVDT-----------YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDV 463
+G DT +G R+D V P ++ WT
Sbjct: 468 GGGRAGTGFDTLDKALVVWQDPVWGTGEPRNPNPHRRVDIIVSPWKTAGCAVLGWTSGTT 527
Query: 464 LNRRLRLLAE-SKGYRLDDTGLFPATYGS-----GGKQGVRARTSLKFDTEKEVFDFLGF 517
R LR + + + D +G+ G+ G G A L E+ V + LG
Sbjct: 528 FQRDLRRYCKRERMLKFDSSGVRSRRDGAWVDLESGPDGSPAPDMLT--AERRVLEGLGL 585
Query: 518 PWLEPHER 525
W P ER
Sbjct: 586 EWRPPEER 593
>gi|406868241|gb|EKD21278.1| DNA polymerase beta [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 665
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 161/362 (44%), Gaps = 38/362 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N E K+ I G+ SY AI I PFKI+ +V L G+
Sbjct: 304 NDEFVEQLRKIKKIREIEGDQVGFRSYNAAIASIAAYPFKIKCLAEVTRLHACGQKFAQL 363
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 317
E TGK++++E + D++ + I +F + +G TA Y +G R LDD+ +N + +
Sbjct: 364 WYEWHRTGKVAEIEDKKVDDRFKIIEIFYGIHDVGAHTALSYYARGWRDLDDIVENWNKI 423
Query: 318 THSQRLGLKYFDDI-KTRIPRHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGD 375
+Q++G+KY+D+ K +IPR EV+ + + + P +++CGG YRRGK GD
Sbjct: 424 QRNQQIGVKYYDEFNKMKIPRSEVKNIGDVTLDHANRLRPGFQLVICGG-YRRGKLMSGD 482
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH--------SEEGTDSGVDTYF 427
+D+++ HPD ++ G + + + L++ +L L S S+ G + F
Sbjct: 483 VDIMLSHPDEEATDGTIHELLNSLEQDGYLTHRLDVSDRNSRRGQEPSQNGGSGAASSGF 542
Query: 428 -----GLCT-----YPGRE-------------LRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
GL +P +E R+D V P ++ WTG +
Sbjct: 543 DSLDKGLIVWQDPDWPTKEDDLKANPHARNPNPHRRVDILVSPWKTAGCAVLGWTGGTMF 602
Query: 465 NRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 523
R LRL K R D +G+ G + A + + EK VF L PW EP
Sbjct: 603 ERDLRLYCREKLNLRFDSSGI--RRRDDGTWLDLEAGGTDMVEKEKMVFAGLKIPWREPT 660
Query: 524 ER 525
ER
Sbjct: 661 ER 662
>gi|41053810|ref|NP_956542.1| DNA polymerase mu [Danio rerio]
gi|29126850|gb|AAH47832.1| Polymerase (DNA directed), mu [Danio rerio]
gi|182891836|gb|AAI65363.1| Polm protein [Danio rerio]
Length = 507
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 44/338 (13%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
RS ++ +A V++ LP +++S + ++ LP +G Q I+EI+ G ++E + E+
Sbjct: 181 RSVAFRRAASVLKALPHRVKSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQF 240
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
+ + V+G+G TA + +G RT DDL + L +Q+ G++Y+ +++ + R E
Sbjct: 241 QAMKALTGVFGVGVRTADRWIREGLRTPDDLIRTGQQLNRAQQAGVQYYSELQRAVTRAE 300
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E + +++ A VLP I G +RRGK D+D +I HP+ +G +SK + L
Sbjct: 301 AELIMAIVEAAVNSVLPGCQIQLMGGFRRGKEVGHDVDFLITHPEEGKEEGLMSKIISWL 360
Query: 400 KEMKFL------REDLIFSTHSEEGTDSGVDTY------FGL------------------ 429
+E L R + + S +D + F L
Sbjct: 361 EEQGVLLYQKTTRNSYVERLDGPARSASNMDRFERCFSIFKLHSSASRSGSASTSESGSA 420
Query: 430 CTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 488
C R +R +D V P +AF + WTG+ + R LR A + K L L+ +
Sbjct: 421 CDSGCRAVR--VDLVVSPFSQFAFATLGWTGSKLFERELRRWAGQEKQMTLSSHTLYDS- 477
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KQ + L+ TE+E+F LG ++ P ERN
Sbjct: 478 -----KQNL----YLRAQTEEEIFAHLGLEFIPPSERN 506
>gi|410951920|ref|XP_003982640.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Felis catus]
Length = 458
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 150/329 (45%), Gaps = 22/329 (6%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++TE L G + R S+Y+A +++ LP ++ + Q++GLP G+
Sbjct: 150 NSSLTEPLEMLAEAAGFEGSEGRFLSFYRAASMLKALPSRVTAMSQLQGLPHFGEHSCRV 209
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
IQE++ G ++E E+ +T+ LF ++G+G TA + Y +G RTLD L+ + L
Sbjct: 210 IQEVLAQGVCEEVERIRCSERYQTMKLFTGIFGVGVKTADRWYREGLRTLDSLQEQPQRL 269
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL+++ D+ + R +VE ++R+++ A +LP + G +RRGK D+D
Sbjct: 270 TQQQKAGLRHYQDLSVPLQRPQVEALQRVVEAAVGHILPGATVTLAGGFRRGKLQGHDVD 329
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGREL 437
++ HP G LS+ + L+ + L H D+
Sbjct: 330 FLLTHPQEGREAGLLSRVMHSLQSQGLV---LYHQHHHGHCADAACPPL----------Q 376
Query: 438 RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H +D + R F L + G V R A + FP Y G G
Sbjct: 377 NHAMDG--FERTFCIFCLPSPPGAAVGGAR---RAVRVDLVVVPVSQFP--YALLGWTGS 429
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ + +E+++F LG +L P +RN
Sbjct: 430 K-KKHFHAASEEDIFRHLGLEYLPPEQRN 457
>gi|146078011|ref|XP_001463420.1| mitochondrial DNA polymerase beta [Leishmania infantum JPCM5]
gi|398010897|ref|XP_003858645.1| mitochondrial DNA polymerase beta [Leishmania donovani]
gi|134067505|emb|CAM65784.1| mitochondrial DNA polymerase beta [Leishmania infantum JPCM5]
gi|322496854|emb|CBZ31924.1| mitochondrial DNA polymerase beta [Leishmania donovani]
Length = 376
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 172/377 (45%), Gaps = 58/377 (15%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 255
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 315 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 370 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + + G L +V+ L+ +K+L E G
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYL----------EATMAQG 238
Query: 423 VDTYFGLCTYPGRELR-------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
Y G+ P R +R R+D ++ ++ +TG+ N +R
Sbjct: 239 PLKYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMR 298
Query: 470 LLAESKGYRLDDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEK 509
A SKGY L++ GLF A Y G +G A L + +E+
Sbjct: 299 QAAISKGYLLNEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQ 358
Query: 510 EVFDFLGFPWLEPHERN 526
+VFD LG P+ +P R+
Sbjct: 359 DVFDVLGMPYAKPENRD 375
>gi|388454490|ref|NP_001253623.1| DNA nucleotidylexotransferase [Macaca mulatta]
gi|355562663|gb|EHH19257.1| hypothetical protein EGK_19933 [Macaca mulatta]
gi|383416293|gb|AFH31360.1| DNA nucleotidylexotransferase isoform 1 [Macaca mulatta]
Length = 510
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 173/357 (48%), Gaps = 41/357 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T QR G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P + + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 402
Query: 429 LCTY-----------------PGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
C G+ + R+D + P + AF L+ WTG+ R LR
Sbjct: 403 KCFLIFKLPLQRVDSDQSSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 462
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|355782991|gb|EHH64912.1| hypothetical protein EGM_18244 [Macaca fascicularis]
Length = 510
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 173/357 (48%), Gaps = 41/357 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T QR G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P + + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 402
Query: 429 LCTY-----------------PGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
C G+ + R+D + P + AF L+ WTG+ R LR
Sbjct: 403 KCFLIFKLPLQRVDSDQSSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 462
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|6003545|gb|AAF00495.1|AF182167_1 DNA polymerase beta [Leishmania infantum]
Length = 376
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 172/377 (45%), Gaps = 58/377 (15%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 255
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 315 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 370 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + + G L +V+ L+ +K+L E G
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYL----------EATMAQG 238
Query: 423 VDTYFGLCTYPGRELR-------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
Y G+ P R +R R+D ++ ++ +TG+ N +R
Sbjct: 239 PLKYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMR 298
Query: 470 LLAESKGYRLDDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEK 509
A SKGY L++ GLF A Y G +G A L + +E+
Sbjct: 299 QAAISKGYLLNEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQ 358
Query: 510 EVFDFLGFPWLEPHERN 526
+VFD LG P+ +P R+
Sbjct: 359 DVFDVLGMPYAKPENRD 375
>gi|139001490|dbj|BAF51677.1| deoxynucleotidyltransferase, terminal [Microcebus murinus]
Length = 511
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 174/360 (48%), Gaps = 42/360 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P +G +
Sbjct: 163 NCNHIFTDAFEILAENYEFRENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLGDKAK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 317 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSHVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHP--DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + L K V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEEEEQQLLHK-VMNLWEKKGLLLYCDLVESTFEKFKLPSRKVDALDHF 401
Query: 428 GLCTYPGRELRH--------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
C + +L H R+D + P + +A+ L+ WTG+ R
Sbjct: 402 QKC-FLILKLHHQRVVDSEKSSQQEEKTWKAIRVDLVMCPYECHAYALLGWTGSRQFERD 460
Query: 468 LRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LR A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 461 LRRYATHERRMMLDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 510
>gi|301763246|ref|XP_002917036.1| PREDICTED: DNA nucleotidylexotransferase-like [Ailuropoda
melanoleuca]
Length = 510
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 168/358 (46%), Gaps = 40/358 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 164 NCNHIFTDAFEVLAENYEFRENEVFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 223
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 224 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 283
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 284 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 343
Query: 375 DLDVVIMHPDR--KSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + L K + L E K L D + ST + T S VD +F
Sbjct: 344 DVDFLITSPGSTDEDEEQLLPKVI-NLWERKGLLLYCDFVESTFEKLKTPSRKVDALDHF 402
Query: 428 GLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
C + +L H R+D + P + AF L+ WTG+
Sbjct: 403 QKC-FLILKLHHQRVDSGKCSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRFERDLR 461
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R + LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 462 RYATHERKMMLDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|400596143|gb|EJP63927.1| condensin complex component SMC1 [Beauveria bassiana ARSEF 2860]
Length = 2316
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 169/377 (44%), Gaps = 49/377 (12%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESAD--------- 243
NPP+ + I E+ K I R L D+ +Y +I I P+KI+
Sbjct: 1941 NPPN-SSFIDEL--KSIRTIRLLQGDKIGVRAYSTSIASIAAYPYKIQKPQGTAFTLIPE 1997
Query: 244 ------------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 291
+V LPG G + + QE TG+ ++ + D K+ + +F ++WG
Sbjct: 1998 DLTSMLDSNYLAEVSRLPGCGSKIAELYQEWHATGQTEEMRESKADPKIDVLRIFYDIWG 2057
Query: 292 IGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
+G TA+ Y+KG R LDD+ SL+ Q++G+KY+++ + +I R EV ++ ++
Sbjct: 2058 VGDTTARHFYQKGWRDLDDVVEHGWKSLSRVQQIGVKYYEEFQKKIGRDEVARIADVILD 2117
Query: 350 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
+ ++ G YRRG+ GD+DV++ H + + K V ++ ++ L
Sbjct: 2118 HAHRLDQAYELIVVGGYRRGREENGDVDVILSHKEEHKTSRLVEKLVLSIENDNYITHTL 2177
Query: 410 IFSTHSE-----------EGTDSG-----VDTYFGLCTYP--GRELRHRIDFKVYPRDIY 451
ST + EG+ SG +D + P + L R+D V P
Sbjct: 2178 SLSTRNSERGQVPLQWKGEGSTSGAGFDTLDKAMVVWLDPKDAKALHRRVDIIVSPWKTV 2237
Query: 452 AFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGS--GGKQGVRARTSLKFDTE 508
++ W+G R L R + KG + D +G+ GS ++G + S++ + E
Sbjct: 2238 GCAILGWSGETTFQRDLRRYCKKEKGLKFDSSGIRNRANGSWVDLERGDGSADSME-EAE 2296
Query: 509 KEVFDFLGFPWLEPHER 525
+ VFD L PW P +R
Sbjct: 2297 RRVFDGLNIPWRPPWDR 2313
>gi|301117710|ref|XP_002906583.1| DNA polymerase lambda-like protein [Phytophthora infestans T30-4]
gi|262107932|gb|EEY65984.1| DNA polymerase lambda-like protein [Phytophthora infestans T30-4]
Length = 472
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 115/191 (60%), Gaps = 3/191 (1%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+LN ++T+ +++ + R + Y K + ++ + ++ S K + + ++
Sbjct: 251 NLNAHLTDPLEEMMEFLDVERDVWRQYMYKKVVSSLKAMRRRVCSVKDFKDMHWVKGRLR 310
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
D + EI+ TG+L+KL+ + + ++R + +WG+GPATA KLY +G++++ +L+ ++
Sbjct: 311 DKVIEILETGRLAKLDAKKSNPRLRALVEIARIWGVGPATAAKLYGQGYKSVTELRKPEA 370
Query: 317 ---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
LT Q++G+K+++D T+IPR EV Q+E+ + +++P I L GSYRRGK S
Sbjct: 371 AAVLTAQQQIGVKHYEDFLTKIPRAEVHQIEQTVVDEVHKMIPNAIALACGSYRRGKLSS 430
Query: 374 GDLDVVIMHPD 384
GD DV+I PD
Sbjct: 431 GDCDVLITDPD 441
>gi|402881070|ref|XP_003904103.1| PREDICTED: DNA nucleotidylexotransferase [Papio anubis]
Length = 510
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 172/357 (48%), Gaps = 41/357 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVRAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P + + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 402
Query: 429 LCTY-----------------PGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
C G+ + R+D + P + AF L+ WTG+ R LR
Sbjct: 403 KCFLIFKLPLQRVDSHQSSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 462
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|157864819|ref|XP_001681118.1| mitochondrial DNA polymerase beta [Leishmania major strain
Friedlin]
gi|68124412|emb|CAJ02268.1| mitochondrial DNA polymerase beta [Leishmania major strain
Friedlin]
Length = 376
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 171/377 (45%), Gaps = 58/377 (15%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 255
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGTKL 69
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTK-PKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 315 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
SLT QR+G+KYF DI +IP E E L+ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLRDKCMEVLGKDFSILICGSYRRR 188
Query: 370 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + + G L +V+ L+ +K+L E G
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYL----------EATMAQG 238
Query: 423 VDTYFGLCTYPGRELR-------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
Y G+ P R +R R+D ++ ++ +TG+ N +R
Sbjct: 239 PLKYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMR 298
Query: 470 LLAESKGYRLDDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEK 509
A SKGY L++ GLF A Y G +G A L + +E+
Sbjct: 299 QAAISKGYLLNEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQ 358
Query: 510 EVFDFLGFPWLEPHERN 526
+VFD LG P+ +P R+
Sbjct: 359 DVFDVLGMPYAKPENRD 375
>gi|405952072|gb|EKC19924.1| DNA polymerase mu [Crassostrea gigas]
Length = 481
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 159/371 (42%), Gaps = 75/371 (20%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R+ ++ +A V++ L F + S DQ+KG +GK +Q +Q I+ G ++E D
Sbjct: 122 RALAWRRASCVLKSLKFPLTSIDQLKGAKDVGKHVQKVLQSILDHGTSDEVEKVRNDPWY 181
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHE 339
+ + +F +V+G G TAQ+ EKG T+D+++ N R GL + +++ + R E
Sbjct: 182 KKMKIFTKVFGAGTKTAQEWIEKGWTTVDEVRQNYTKGDWRLRFGLAFHEELMELVTRLE 241
Query: 340 VEQMERLLQKAGEEVLPEVII-LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
+ + ++ E +LP + + LCGG ++RGK D+D++ H GFL + +
Sbjct: 242 ADNFTKFIKHQCETILPGISVELCGG-FKRGKTHGHDIDLLFTHQSTGKEVGFLPRLLSV 300
Query: 399 LKEMKFL----------REDLIF--STHSEEGTDSGVDTYFGLCTYPGR----------- 435
L+ + E+ ++ S H++ + + G+ +P +
Sbjct: 301 LESKNLILCGKWNRGTYTEEAMYSDSKHTKNNQLDHFEKWIGIIKFPKKWRKSISEEEFF 360
Query: 436 --------------------------------------ELRHRIDFKVYPRDIYAFGLIA 457
+ R+D + P D Y + L+
Sbjct: 361 SDENVSADLNSYEDSEPAKKKLKTNELSPEDIAAQSRSWIARRVDLIIAPYDQYFYALVG 420
Query: 458 WTGNDVLNRRLRLLAE-SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 516
WTG+ NR +R A+ + Y + GL+ T R SL +EKE+FD LG
Sbjct: 421 WTGSKQFNRDIRTYAKRTHNYAMTSHGLYDLT----------KRKSLPAKSEKEIFDILG 470
Query: 517 FPWLEPHERNL 527
P+ P ERN
Sbjct: 471 VPYFPPEERNC 481
>gi|40037389|gb|AAR37396.1| terminal deoxynucleotidyl transferase [Raja eglanteria]
Length = 525
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 54/353 (15%)
Query: 218 EDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
E+ SF +Y +A V++ LP+ I + ++GLP IG + I+E++ G SK+E
Sbjct: 182 ENAGSFVAYSRATSVLKSLPYPITGMNDLEGLPCIGDQTRVIIEELLEEGVCSKVESLLC 241
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIKTR 334
DEK + LF V+G+G TA K Y G RTL+++K +T + Q+ G Y++DI
Sbjct: 242 DEKYKARKLFTSVFGVGVKTADKWYGLGFRTLEEIKARKDITFTKMQKAGFLYYEDILQA 301
Query: 335 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 394
+ + E E + +++ + P+ + G +RRGK D+D++I + + +G L K
Sbjct: 302 VKKSEAEAVIQIIGDIVGQCAPDAKVTLTGGFRRGKEVGHDVDLLITCLEEGNEEGVLHK 361
Query: 395 YVKKL-KEMKFLREDLIFSTHSEEGTDS----GVDTY------------------FGLCT 431
+ KL + L D++ +T + S +D + +GL +
Sbjct: 362 AISKLDRHGLLLFCDVVEATMEKRQLPSRKYDAMDHFQKCFLILKLDKRLVNKRDYGLAS 421
Query: 432 YPGRELRH-----------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLLAE 473
L R+D + P +A+ L+ W+G+ R L R ++
Sbjct: 422 GSAVRLTDKRTEDENKTMIKGWKAIRVDLVIVPSQQFAYALLGWSGSRQFERDLRRYCSQ 481
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
K LD+ GL+ + LK +TE+E+F LG ++EP ERN
Sbjct: 482 EKRMLLDNHGLYDKN----------TQEFLKAETEEEIFAHLGLEYIEPQERN 524
>gi|409044114|gb|EKM53596.1| hypothetical protein PHACADRAFT_176005 [Phanerochaete carnosa
HHB-10118-sp]
Length = 564
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 155/359 (43%), Gaps = 73/359 (20%)
Query: 209 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 267
+I RAL GE+R + SY +AI I+ P +I S QV+ L +G
Sbjct: 235 IIKRSRALEGEERSALSYSRAISAIKAYPRRITSIRQVEELSHVGT-------------- 280
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--------KNEDS--- 316
E+ + +SLF ++GIGP+TA++LY G RT+DDL + E+S
Sbjct: 281 ------IANSERFKALSLFSSIYGIGPSTARRLYALGLRTVDDLEVYFGVEPEEEESQLV 334
Query: 317 -LTHSQRLG---------------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
L H +R G L +D + IPR EVE+M R++ V +
Sbjct: 335 ELEHHERFGRASESGLGETWIKIALGLRNDFELMIPRAEVEEMGRVVMDELNIVEHGCVS 394
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS-------- 412
G YRRGK D+D+V HPD KG ++V L + + + S
Sbjct: 395 TIVGGYRRGKPQSNDVDIVFTHPDPTKSKGLCKRFVHHLHKKGMVTHVMHLSGFHGHNPL 454
Query: 413 -THSEEGTDSGVDTYFGLCTYP-GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
T + + + + + P + R R+D ++Y +I W+G+ + R +R
Sbjct: 455 RTTHWDSLEKALTVFILPPSSPFYKGTRRRMDLIFAQPEVYWCAVIGWSGSIMFQRDIRQ 514
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHERN 526
A + KG + D +G+ R S F TEKEVFD G W++P RN
Sbjct: 515 WAKDKKGMKFDSSGI------------TRRYDSKPFYPKTEKEVFDLFGLEWVDPVWRN 561
>gi|58477450|gb|AAH90111.1| poll.2 protein [Xenopus (Silurana) tropicalis]
Length = 448
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 1/217 (0%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 188 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 247
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 248 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 307
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
T Q+ GL ++ D++ + R E +E+L++ A + +P+V + G +RRGK D+D
Sbjct: 308 TAEQKAGLLHYTDLQQSVTREEAGTVEQLIKGALQSFVPDVRVTMTGGFRRGKQEGHDVD 367
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
+I HPD ++ G L K V L F RE FS H
Sbjct: 368 FLITHPDEEALNGLLRKAVAWLDGKHFERELRRFSLH 404
>gi|397510136|ref|XP_003825458.1| PREDICTED: DNA nucleotidylexotransferase [Pan paniscus]
Length = 509
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 169/356 (47%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ I G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFITMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|291223873|ref|XP_002731933.1| PREDICTED: terminal deoxynucleotidyl transferase-like [Saccoglossus
kowalevskii]
Length = 539
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 2/189 (1%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
R+ ++ +A ++ LP + S V L IGK +D I+EI+ G +++E + E
Sbjct: 181 RALAFRRASASLKSLPHTVTSMRDVANLKDIGKHCKDVIREILEKGYSTEIEDIKSSEWF 240
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRH 338
+TI LF ++G GPATA+K Y G+RTL+D+K + LT QR G++++DD++T + R
Sbjct: 241 KTIQLFVGIYGCGPATARKWYNMGYRTLEDIKKSTTIHLTADQRNGIRFYDDLQTPVIRR 300
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
E E + + + +E+ + ++ G + RGK S D+D+++ HPD KG L K +
Sbjct: 301 EAEAIRNFIIEEIKEISNDFTVVITGGFIRGKDSGHDVDLLMSHPDNGKEKGVLQKLITN 360
Query: 399 LKEMKFLRE 407
LK+ L E
Sbjct: 361 LKQKNLLLE 369
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVR 498
R+DF V P+ Y + L+ W G+ + NR +RL A+ + G L GL Y +Q +
Sbjct: 461 RVDFVVCPQSQYGYALLGWVGSKMFNRSIRLYADRELGMMLSSHGL----YDRINQQYIP 516
Query: 499 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
A +E+E+F+ L W+E +RN
Sbjct: 517 A------SSEQEIFEHLKLTWIEHEDRNC 539
>gi|401416298|ref|XP_003872644.1| mitochondrial DNA polymerase beta [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488868|emb|CBZ24118.1| mitochondrial DNA polymerase beta [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 376
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 173/377 (45%), Gaps = 58/377 (15%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 255
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 315 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 370 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + + G L +V+ L+ +K+L E G
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLEGIKYL----------EATMAQG 238
Query: 423 VDTYFGLCTYPGRELR-------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
Y G+ P R +R R+D ++ ++ +TG+ N +R
Sbjct: 239 PLKYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMR 298
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQ-----GVRARTS---------------LKFDTEK 509
A SKGY L++ GLF ++ G+R + + ++ +E+
Sbjct: 299 QAAISKGYLLNEYGLFKLGTPEEARELYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQ 358
Query: 510 EVFDFLGFPWLEPHERN 526
+VFD LG P+ +P R+
Sbjct: 359 DVFDVLGMPYAKPENRD 375
>gi|57231410|gb|AAW47418.1| DNA polymerase mu [Danio rerio]
Length = 507
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 44/338 (13%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
RS ++ +A V++ LP +++S + ++ LP +G Q I+EI+ G ++E + E+
Sbjct: 181 RSVAFRRAASVLKALPHRVKSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQF 240
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
+ + V+G+G TA + +G RT DDL + L +Q+ G++Y+ +++ + R E
Sbjct: 241 QAMKALTGVFGVGVRTADRWIREGLRTPDDLIRTGQQLNRAQQAGVQYYSELQRAVTRAE 300
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
E + +++ A VLP I G +RRGK D+D +I HP+ +G + K + L
Sbjct: 301 AELIMAIVEAAVNSVLPGCQIQLMGGFRRGKEVGHDVDFLITHPEEGKEEGLMLKIISWL 360
Query: 400 KEMKFL------REDLIFSTHSEEGTDSGVDTY------FGL------------------ 429
+E L R + + S +D + F L
Sbjct: 361 EEQGVLLYQKTTRNSYVERLDGPARSASNMDRFERCFSIFKLHSSASRSGSASTSESGSA 420
Query: 430 CTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 488
C R +R +D V P +AF + WTG+ + R LR A + K L L+ +
Sbjct: 421 CDSGCRAVR--VDLVVSPFSQFAFATLGWTGSKLFERELRRWAGQEKQMTLSSHTLYDS- 477
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KQ + L+ TE+E+F LG ++ P ERN
Sbjct: 478 -----KQNL----YLRAQTEEEIFAHLGLEFIPPSERN 506
>gi|15277813|gb|AAH12920.1| Deoxynucleotidyltransferase, terminal [Homo sapiens]
gi|16923263|dbj|BAB72001.1| terminal deoxynucleotidyltransferase [Homo sapiens]
gi|119570364|gb|EAW49979.1| deoxynucleotidyltransferase, terminal [Homo sapiens]
gi|123981124|gb|ABM82391.1| deoxynucleotidyltransferase, terminal [synthetic construct]
gi|123995939|gb|ABM85571.1| deoxynucleotidyltransferase, terminal [synthetic construct]
Length = 509
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|63054850|ref|NP_004079.3| DNA nucleotidylexotransferase isoform 1 [Homo sapiens]
gi|311033533|sp|P04053.3|TDT_HUMAN RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
Length = 509
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|55634423|ref|XP_521569.1| PREDICTED: DNA nucleotidylexotransferase isoform 3 [Pan
troglodytes]
Length = 509
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|426365704|ref|XP_004049908.1| PREDICTED: DNA nucleotidylexotransferase [Gorilla gorilla gorilla]
Length = 509
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWENKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|297687123|ref|XP_002821073.1| PREDICTED: DNA nucleotidylexotransferase [Pongo abelii]
Length = 509
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 168/356 (47%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++ + S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRLDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYECRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|302681029|ref|XP_003030196.1| hypothetical protein SCHCODRAFT_57262 [Schizophyllum commune H4-8]
gi|300103887|gb|EFI95293.1| hypothetical protein SCHCODRAFT_57262 [Schizophyllum commune H4-8]
Length = 562
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 166/363 (45%), Gaps = 47/363 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N+N+ +I R L +DR S SY AI V + + V LP IGK M
Sbjct: 209 NQNLVSRLA-IIRRSRELEDDRISALSYDHAIGVTYPYEITEDRLNDVSKLPHIGKKMIA 267
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------ 311
++E V TG + + ++ +++ F +++G+G TA+KLY G +T +D+
Sbjct: 268 KLEEYVETGDIEEAATIAASQRFQSLEAFTDLYGVGATTARKLYAAGCKTFEDVERYYGV 327
Query: 312 -----------KNEDSLTH-------SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
+ + S T + R+ L+ +D+ RIPR EVE + + + +E
Sbjct: 328 DTGAGRARSGKQAKPSTTAKPKIPSITPRVALELREDLAQRIPRGEVEAIHAAVVQVLDE 387
Query: 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDR----KSHKGFLSKYVKKLKEMKFLREDL 409
V P + + G YRRGK+ GD+D+VI HP K KG + V++L E + +
Sbjct: 388 VRPGCVTVVVGGYRRGKSLSGDVDIVIGHPKLSPTGKKVKGLSNLLVERLFERGLVTHLM 447
Query: 410 IFST-HSEEGTDS----GVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
S H+ + + S ++ + PG + R+D + Y ++ WTG+
Sbjct: 448 YLSGFHTPDVSRSVHWDALEKALTVFVLPG-GVHRRVDLIFAAPEAYWTAVVGWTGSKTF 506
Query: 465 NRRL-RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 523
R + R A+ KG + D TGL T S G+ L +E++VF LG W+ P
Sbjct: 507 ERDIRRWAADQKGLKFDSTGL---TRRSNGE-------ILCPKSEEDVFRMLGLDWIPPT 556
Query: 524 ERN 526
RN
Sbjct: 557 LRN 559
>gi|336385326|gb|EGO26473.1| hypothetical protein SERLADRAFT_447668 [Serpula lacrymans var.
lacrymans S7.9]
Length = 541
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/454 (24%), Positives = 190/454 (41%), Gaps = 73/454 (16%)
Query: 64 MDLEALLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 123
+D E ++++ QWLEDS++ G + P G+ A VL + +
Sbjct: 118 VDWELAKSKAIVTPQWLEDSVKYGRPM----------PCGDYAALNVL-------HDETV 160
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSS 183
E R S + + S+ + + E P LT+T S
Sbjct: 161 HECPDRPSCNSGSPEPGPSHTSSRSPSTSKQIPEDAPQPADISLLTHT----------SR 210
Query: 184 HHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD 243
+ S L P N+ + + K+ GE+R SY +AI VI+ P I ++
Sbjct: 211 YCCCRASPLVCP---NQGLIKQLDKIKEARNLEGEERSMLSYARAISVIKAFPHVITHSN 267
Query: 244 ---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
++ LP +G+ + ++E + TG++++ + + + +S F + GIGP TA+KL
Sbjct: 268 LKREISKLPYLGEKLLSMVEEFIKTGQINETQGILTSSRFQALSAFTTIHGIGPHTARKL 327
Query: 301 YEKGHRTLDDLK-------------------------NEDSLTHSQRLGLKYFDDIKTRI 335
Y G RTL+DL+ +E + S ++ L D I
Sbjct: 328 YNLGLRTLEDLERYYEVEPGRCGQETLAVIEAAGRESDEAIVERSIKVALALRHDFSQTI 387
Query: 336 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH----KGF 391
PR EVE+M R++ E++ + G YRRGK D+D+VI H + +S KG
Sbjct: 388 PRAEVEEMNRVVMSELEQIEQGCKSIVVGGYRRGKPQSNDVDIVISHRNWESGAGKIKGL 447
Query: 392 LSKYVKKLKEMKFLREDLIFSTHSEEGT------DSGVDTYFGLCTYPG----RELRHRI 441
++V++L E + + S E DS ++ + PG R + R+
Sbjct: 448 CKRFVRRLHERGLVTHVMHLSGFHEHNALRTHHWDS-LEKALTVFVLPGDGSQRRVYRRL 506
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
D ++ ++ WTG+ + R LRL A+ +
Sbjct: 507 DLIFAAPQVFWTAVVGWTGSTMFQRDLRLYAKQQ 540
>gi|150392479|sp|A4PCD4.1|TDT_EULMA RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|139001468|dbj|BAF51669.1| deoxynucleotidyltransferase, terminal [Eulemur macaco]
Length = 511
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 42/360 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHVFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 317 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 375 DLDVVIMHP--DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + L K V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEEEEEQLLHK-VMNLWEKKGLLLYCDLVESTFEKLKLPSRKVDALDHF 401
Query: 428 GLCTYPGRELRH--------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
C + +L H R+D + P + AF L+ WTG+ R
Sbjct: 402 QKC-FLILKLHHQRVVDSQKSSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERD 460
Query: 468 LRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LR A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 461 LRRYATHERRMMLDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPSERN 510
>gi|219127150|ref|XP_002183804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404527|gb|EEC44473.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 570
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 157/338 (46%), Gaps = 41/338 (12%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQV----KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
+S+S+ + L F+I + +V + G G S D I + + T + S+L + E
Sbjct: 163 KSYSFQITAGRLLHLGFEIRDSPEVLRHLASINGFGSSTMDIITDYLRTQQCSRLRNLES 222
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH-----SQRLGLKYFDDI 331
D + +WG+G A++L + G + +++++ L + +Q +G+ +DD+
Sbjct: 223 DPDRVAMKNMMNIWGVGRVRAKELVDAGFKRINEVRQAVELGNLQLERNQYIGVLCYDDL 282
Query: 332 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH--K 389
++ R EVE + +++ + PE + GSYRRGK +CGD+D++I H D
Sbjct: 283 LEKMDRTEVESIGKIISNIFKMSYPEAEVCVMGSYRRGKHACGDVDILITHEDYNHTVPP 342
Query: 390 GFLSKYVKKLKEMKFLREDLIF-------------------STHSEEGTDSGVDTYFGLC 430
L +++ +L++ + L F S ++ S +Y G+
Sbjct: 343 KALGQFIDELRQQGHIAYHLTFISGMKHELYETIPDAPSHWSPQRDKRDKSSSSSYMGVF 402
Query: 431 TYPGRE-LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPAT 488
P + R+D K YP AF + +TGN NR +RL A K Y L+D G+F
Sbjct: 403 KSPCMTGKKRRVDIKFYPWREKAFASLYFTGNGYFNRSMRLWATRKFNYTLNDHGVF--- 459
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+G R L +EKE+F+FL W EP ER+
Sbjct: 460 -----DRGSLVRV-LDTTSEKEIFEFLDISWREPKERD 491
>gi|348541103|ref|XP_003458026.1| PREDICTED: DNA nucleotidylexotransferase-like [Oreochromis
niloticus]
Length = 500
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 158/354 (44%), Gaps = 36/354 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK T+ F L + + ++ +A V++ LP+ +++ + LP +G+
Sbjct: 156 NKIFTDAFEVLAESHEFNDMEGPCLAFRRAASVLKSLPWTVQNLRVTEDLPCLGEHSMCV 215
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 316
I+EI+ G+ ++E DE+ + + LF V+G+GP TA+K Y +G R+ D+ E S
Sbjct: 216 IEEILQHGRSFEVEKILSDERYQILKLFTSVFGVGPKTAEKWYRRGLRSFSDVLAEPSIH 275
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L Q+ G ++ DI + + E + + ++ +A + P+ I+ G +RRGK D+
Sbjct: 276 LNRMQQSGFLHYGDISRAVSKAEAQALGNIIDEAVHAITPDAILTLTGGFRRGKDFGHDV 335
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLR---------EDLIFSTHSEEGT-------- 419
D ++ P + L+ + +LK L ++ +H E
Sbjct: 336 DFIVTTPQLGKEERLLTSVIDRLKHQGILLYCEYQASTFDESKLPSHRFEAMDHFAKCFL 395
Query: 420 -----DSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
DS VD R R R+D P D YAF L+ W+G+ R LR A
Sbjct: 396 ILRLEDSQVDGGLQTAEEDRRGWRAVRVDLVSPPVDRYAFTLLGWSGSRQFERDLRRFAR 455
Query: 474 -SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ LD+ L+ T + L TEK++F LG ++EP +RN
Sbjct: 456 MERRMLLDNHALYDKT----------KKEFLAATTEKDIFAHLGLEYIEPWQRN 499
>gi|348588114|ref|XP_003479812.1| PREDICTED: LOW QUALITY PROTEIN: DNA nucleotidylexotransferase-like
[Cavia porcellus]
Length = 510
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 159/331 (48%), Gaps = 39/331 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y +A V++ LPF I S +G+P +G ++ I+EI+ G+ S++ DE+ ++
Sbjct: 190 TYIRAASVLKSLPFTIISMKDTEGIPCLGDRVKCIIEEIIEDGESSEVNAVLNDERYKSF 249
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 341
LF V+G+G T++K + G R+L+ +K++ SL T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLNKIKSDKSLKFTRMQKAGFLYYEDLVSCVTRAEAE 309
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD--RKSHKGFLSKYVKKL 399
+ L+++A LP I G +RRGK D+D +I P+ + L K + L
Sbjct: 310 AVSTLVKEAVWAFLPGAFISMTGGFRRGKEIGHDVDFLITSPEITEDEEQQVLHKVI-NL 368
Query: 400 KEMK--FLREDLIFSTHSE--------EGTDSGVDTYFGLCTYPGRELRH---------- 439
E K L DL+ ST + + D + L + RE
Sbjct: 369 WENKGLLLYSDLVESTFEKLKLPSRKVDALDHFQKCFLILKLHHQREDNEKSSQQEEKTW 428
Query: 440 ---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 495
R+D + P + AF L+ WTG+ R LR A + LD+ L+ T
Sbjct: 429 KAIRVDLVMCPYERRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDKT------- 481
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LK ++E+E+F LG ++EP ERN
Sbjct: 482 ---KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|139001476|dbj|BAF51673.1| deoxynucleotidyltransferase, terminal [Lemur catta]
Length = 511
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 42/360 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHIFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSNIRSDKS 282
Query: 317 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTQMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 375 DLDVVIMHP--DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + L K V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEEEEEQLLHK-VMNLWEKKGLLLYCDLVESTFEKLKLPSRKVDALDHF 401
Query: 428 GLCTYPGRELRH--------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
C + +L H R+D + P + AF L+ WTG+ R
Sbjct: 402 QKC-FLILKLHHQRVVDSEKSSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERD 460
Query: 468 LRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+R A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 461 IRRYATHERRMMLDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 510
>gi|332212412|ref|XP_003255313.1| PREDICTED: DNA nucleotidylexotransferase [Nomascus leucogenys]
Length = 509
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 168/356 (47%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G +
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVAFMRAASVLKSLPFTIISMKDTEGIPCLGSKEK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ I G +RRGK
Sbjct: 283 LKFTQMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDASITMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDGDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|310831448|ref|YP_003970091.1| putative family X DNA polymerase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386632|gb|ADO67492.1| putative family X DNA polymerase [Cafeteria roenbergensis virus
BV-PW1]
Length = 350
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 174/371 (46%), Gaps = 64/371 (17%)
Query: 198 LNKNITEIFGKLIN---------IYRALGEDRRSFSYY-----KAIPVIEKLP--FKIES 241
+N N+ F KL++ I L +++R S+ + + +I+K P I +
Sbjct: 1 MNSNVISQFEKLVSKNQQDLDNAIKNKLTDEQRKQSFKLRTNKRVLSIIKKYPEELTINN 60
Query: 242 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE--KDEKVRTISLFGEVWGIGPATAQK 299
++ L GIGK +Q I G + +L+ + K+ K I EV IG +TA++
Sbjct: 61 YKELGDLNGIGKGTITKLQNIFEKGYIDELKGYTAPKNNKEDIIKNLEEVINIGRSTAKE 120
Query: 300 LYEKGHRTLDDLK---NEDSLTHSQR--LGLKYFDDIKTRIPRHEVEQMERLLQK----- 349
L E G +++DDLK N + + + LGLKY+ I+ RIPR+ + ++ ++
Sbjct: 121 LVESGVKSVDDLKKKVNTKKIEVNSKILLGLKYYQKIQERIPRNHITEINEFIKNRINFL 180
Query: 350 -AGEEVLPE---VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--- 402
E++ E + +CG SYRR K + GD+D++I + +L +++ K+ +M
Sbjct: 181 NKKEKLTAENKYIFKICG-SYRRNKPTSGDIDILITQKNTSKTSKYLDEHLPKIIQMFKQ 239
Query: 403 --------KFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
FL ++L TD Y G + L RID + D +
Sbjct: 240 PWKGNNFKPFLIDNL---------TDITPTKYMGFAQFKN-NLPFRIDIRFVSYDSFYTA 289
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
L+ +TG+D N+ +R +A+ KGY+L + GLF + ++ + +E+ VF
Sbjct: 290 LLYFTGSDEFNKVMRNIAKDKGYKLSEYGLFK----------IDSKNQVPIKSEEHVFKI 339
Query: 515 LGFPWLEPHER 525
L +LEPH R
Sbjct: 340 LNMDYLEPHLR 350
>gi|403259830|ref|XP_003922400.1| PREDICTED: DNA nucleotidylexotransferase [Saimiri boliviensis
boliviensis]
Length = 509
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 171/357 (47%), Gaps = 41/357 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 162 NFNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 221
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++E S
Sbjct: 222 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSEKS 281
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTRMQQAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 341
Query: 375 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS----GVDTY- 426
D+D +I P + + L + V L E K L DL+ ST + S +D +
Sbjct: 342 DVDFLITSPGSAEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 401
Query: 427 --FGLCTYPGRELRH--------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
F + P + L R+D + P + AF L+ WTG+ R LR
Sbjct: 402 KCFLIFKLPRQRLDSDQPSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 461
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 462 YATHEQKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|426252859|ref|XP_004020120.1| PREDICTED: DNA nucleotidylexotransferase [Ovis aries]
Length = 512
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 162/330 (49%), Gaps = 38/330 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 193 TFMRAASVLKSLPFTIISMRDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 252
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 341
LF V+G+G T++K + G R+L+ + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 253 KLFTSVFGVGLKTSEKWFRMGFRSLNKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 312
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
+ L+++A LP+ + G +RRGK D+D +I P + L V E
Sbjct: 313 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINFWE 372
Query: 402 MK--FLREDLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH----------------- 439
K L DL+ ST + S VDT +F C + +L H
Sbjct: 373 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKC-FLILKLHHQRVDSGKSNQQEGKTWK 431
Query: 440 --RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQG 496
R+D + P + +AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 432 AIRVDLVMCPYENHAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT-------- 483
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LK ++E+E+F LG ++EP ERN
Sbjct: 484 --KRMFLKAESEEEIFAHLGLDYIEPWERN 511
>gi|29135289|ref|NP_803461.1| DNA nucleotidylexotransferase [Bos taurus]
gi|768|emb|CAA27734.1| unnamed protein product [Bos taurus]
gi|296472648|tpg|DAA14763.1| TPA: terminal deoxynucleotidyltransferase [Bos taurus]
Length = 520
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 38/330 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 201 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 260
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 341
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 261 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 320
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 321 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 380
Query: 402 MK--FLREDLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH----------------- 439
K L DL+ ST + S VDT +F C + +L H
Sbjct: 381 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKC-FLILKLHHQRVDSSKSNQQEGKTWK 439
Query: 440 --RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQG 496
R+D + P + AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 440 AIRVDLVMCPYENRAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT-------- 491
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LK ++E+E+F LG ++EP ERN
Sbjct: 492 --KRVFLKAESEEEIFAHLGLDYIEPWERN 519
>gi|146291077|sp|P06526.2|TDT_BOVIN RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|133777939|gb|AAI14821.1| DNTT protein [Bos taurus]
Length = 509
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 38/330 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 190 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 249
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 341
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 309
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 310 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 369
Query: 402 MK--FLREDLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH----------------- 439
K L DL+ ST + S VDT +F C + +L H
Sbjct: 370 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKC-FLILKLHHQRVDSSKSNQQEGKTWK 428
Query: 440 --RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQG 496
R+D + P + AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 429 AIRVDLVMCPYENRAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT-------- 480
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LK ++E+E+F LG ++EP ERN
Sbjct: 481 --KRVFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|339437|gb|AAA36726.1| terminal transferase [Homo sapiens]
Length = 508
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 166/355 (46%), Gaps = 39/355 (10%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRFERDLRRYA 462
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 THERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 507
>gi|440903527|gb|ELR54173.1| DNA nucleotidylexotransferase, partial [Bos grunniens mutus]
Length = 517
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 38/330 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 198 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDEQYQSF 257
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 341
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 258 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 317
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 318 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 377
Query: 402 MK--FLREDLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH----------------- 439
K L DL+ ST + S VDT +F C + +L H
Sbjct: 378 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKC-FLILKLHHQRVDSSKSNQQEGKTWK 436
Query: 440 --RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQG 496
R+D + P + AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 437 AIRVDLVMCPYENRAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT-------- 488
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LK ++E+E+F LG ++EP ERN
Sbjct: 489 --KRVFLKAESEEEIFAHLGLDYIEPWERN 516
>gi|63054852|ref|NP_001017520.1| DNA nucleotidylexotransferase isoform 2 [Homo sapiens]
Length = 508
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 166/355 (46%), Gaps = 39/355 (10%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRFERDLRRYA 462
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 THERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 507
>gi|62898195|dbj|BAD97037.1| deoxynucleotidyltransferase, terminal variant [Homo sapiens]
Length = 509
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 40/356 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDPVSCVTRAEAEAVSVLVKEAVWAFLPDAFVAMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ S + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESAFEKLRMPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 472 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|45382381|ref|NP_990720.1| DNA nucleotidylexotransferase [Gallus gallus]
gi|549065|sp|P36195.1|TDT_CHICK RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|460163|gb|AAA75280.1| terminal deoxynucleotidyl transferase [Gallus gallus]
Length = 506
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 169/357 (47%), Gaps = 41/357 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ NK T+ F + Y + + +A V++ LPF + ++GLP +G ++
Sbjct: 163 NCNKKFTDAFEIMAENYEFKENEIFCLEFLRAASVLKSLPFPVTRMKDIQGLPCMGDRVR 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K + G RT++++K + +
Sbjct: 223 DVIEEIIEEGESSRAKDVLNDERYKSFKEFTSVFGVGVKTSEKWFRMGLRTVEEVKADKT 282
Query: 317 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L S QR G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 283 LKLSKMQRAGFLYYEDLVSCVSKAEADAVSSIVKNTVCTFLPDALVTITGGFRRGKKIGH 342
Query: 375 DLDVVIMHPDRKS-----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
D+D +I P ++ HKG L + E F++E I S H + D + L
Sbjct: 343 DIDFLITSPGQREDDELLHKGLL--LYCDIIESTFVKEQ-IPSRHV-DAMDHFQKCFAIL 398
Query: 430 CTYPGR---------------ELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
Y R E++ R+D + P + YA+ L+ WTG+ R LR
Sbjct: 399 KLYQPRVDNSSYNMSKKCDMAEVKDWKAIRVDLVITPFEQYAYALLGWTGSRQFGRDLRR 458
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ R R LK +E+E+F LG ++EP ERN
Sbjct: 459 YATHERKMMLDNHALYDK----------RKRVFLKAGSEEEIFAHLGLDYVEPWERN 505
>gi|351704887|gb|EHB07806.1| DNA nucleotidylexotransferase [Heterocephalus glaber]
Length = 509
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 172/362 (47%), Gaps = 51/362 (14%)
Query: 201 NITEIFGKLINIYRALGEDRR-------SFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N IF N + L ED +Y +A V++ LPF I S +G+P +G
Sbjct: 162 NCNYIF---TNAFEILAEDCEFRENEGFYVTYMRAASVLKSLPFTIISMKDTEGIPCLGG 218
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
++ I+EI+ G+ S+++ +E+ ++ LF V+G+G T++K + G R+L +++
Sbjct: 219 RVKCIIEEIIEDGESSEVKAVLNNERYKSFKLFTSVFGVGLKTSEKWFRMGFRSLSKIRS 278
Query: 314 EDSLTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
+ SLT + Q+ G Y++D+ + + R E E + L+++A LP I G +RRGK
Sbjct: 279 DKSLTFTRMQKAGFLYYEDLVSCVTRAEAEAVNMLVKEAVWTFLPGAFISMTGGFRRGKE 338
Query: 372 SCGDLDVVIMHPD--RKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT- 425
D+D +I P+ + L K + L E K L DL+ ST + S VD
Sbjct: 339 IGHDVDFLITSPEVTEDEEQQLLHKVI-NLWEKKGLLLYSDLVESTFEKLKLPSRKVDAL 397
Query: 426 -YFGLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLN 465
+F C + +L H R+D + P + AF L+ WTG+
Sbjct: 398 DHFQKC-FLILKLHHQRVDNDKSPQQGGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFE 456
Query: 466 RRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
R LR A + LD+ L+ T +T LK ++E+E+F LG ++EP E
Sbjct: 457 RDLRRYATHERKMILDNHALYDKT----------KKTFLKAESEEEIFTHLGLDYIEPWE 506
Query: 525 RN 526
RN
Sbjct: 507 RN 508
>gi|119570149|gb|EAW49764.1| polymerase (DNA directed), lambda, isoform CRA_h [Homo sapiens]
Length = 160
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 89/139 (64%), Gaps = 5/139 (3%)
Query: 302 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 361
+KG R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ +
Sbjct: 21 QKGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCV 80
Query: 362 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E G
Sbjct: 81 ACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEENGQQQ 138
Query: 422 GVDTYFGLCTYPGRELRHR 440
Y G+C PG RHR
Sbjct: 139 ---KYLGVCRLPGPGRRHR 154
>gi|361129501|gb|EHL01407.1| putative DNA polymerase family X C2F7.06c [Glarea lozoyensis 74030]
Length = 357
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 37/324 (11%)
Query: 236 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
P + SA ++ LP G QE TG + ++E + DEK + + + ++G+G
Sbjct: 34 PHTLTSALELLKLPHCGSRFAALFQEWKETGMIKEVEDLKYDEKFQAMDVLTGIFGVGDK 93
Query: 296 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
TA++ Y KG+R +DD+ DSLT Q +G K++ D + RIP EVE++ + +
Sbjct: 94 TAREFYAKGYRDIDDIIEYAWDSLTTEQMIGTKFYYDFQQRIPLPEVEKIANHVLSEARK 153
Query: 354 VLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 412
V P +++CGG YR+GK CGD+D+V+ + D + F+ +++ LK+ + L ++
Sbjct: 154 VYPGFEMVICGG-YRKGKPDCGDVDIVLSNRDESATDNFIYEFLLDLKDEGSITHVLRWT 212
Query: 413 T-HSEEG----------TDSGVDTY------FGLCTYPGRE-------------LRHRID 442
+SE G G DT + +P +E L R+D
Sbjct: 213 MRNSERGQTPVNPIKAKAGGGFDTLDHAFVAWQDQDWPTKEADLARDPQFKNPNLHRRVD 272
Query: 443 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGSGGKQGVRART 501
V P ++ W+ R LR KG++ D +G+ T G +
Sbjct: 273 IIVSPWKTAGCAILGWSSGTFFGRDLRSYCRKVKGWKFDTSGI--TTLDDGTWVDLEKGD 330
Query: 502 SLKFDTEKEVFDFLGFPWLEPHER 525
+ EK +F+ LG W +P ER
Sbjct: 331 GDMYVKEKRLFEGLGLEWRDPTER 354
>gi|398405886|ref|XP_003854409.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
gi|339474292|gb|EGP89385.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
Length = 670
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 165/367 (44%), Gaps = 52/367 (14%)
Query: 208 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 266
K I + R L D +Y +I + KI + ++ LPG + + E TG
Sbjct: 304 KQIKLGRLLTNDEIGVRAYSTSIAALAAYNHKISNPREILALPGCDHKIANLYVEWQNTG 363
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK--NEDSLTHSQRL 323
++ +E E ++ ++ ++ F ++WG+G TA+ L Y KG DDL L+ Q++
Sbjct: 364 RIQAVEELESNQDLKILNGFYDIWGVGVTTARDLYYNKGWTDRDDLIEFGWSYLSRVQQI 423
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 382
G+K++D+ IPR EVE + ++++ V + I + G YRRGK +CGD+D+++ H
Sbjct: 424 GVKFYDEFLDLIPRVEVESICEVIREHAVRVRDDGIQTMIVGGYRRGKEACGDVDLILSH 483
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFS---THSEE--------GTDSGVDT------ 425
PD ++ V L+E +++ L S T E+ G G DT
Sbjct: 484 PDESKTLDLVTDLVASLEEEEWITHTLTISLSGTKREQKPLPFRTDGGGHGFDTLDKALV 543
Query: 426 YFGLCTYPGRE-------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLL 471
+ T+P R+ + R+D V P ++ W+G R L R +
Sbjct: 544 VWQDPTWPTRDKDLAEDPQAKNPNIHRRVDIIVAPWRSVGCAVLGWSGGTTFERDLRRYV 603
Query: 472 AESKGYRLDDTGL-------------FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
KG++ D +G+ F G +QG RA+T + E+ VF +G
Sbjct: 604 KHEKGWKFDSSGVRDRGNGEVVDIEGFFEWEGVKAEQG-RAKTMR--EAERRVFKGMGLE 660
Query: 519 WLEPHER 525
+ EP ER
Sbjct: 661 YREPWER 667
>gi|181649|gb|AAA53100.1| terminal DONT [Homo sapiens]
Length = 510
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 169/357 (47%), Gaps = 41/357 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 429
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 430 CTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTGND-VLNRRLRL 470
C + R R+D + P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSPRQFERDLRR 462
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|73998101|ref|XP_849761.1| PREDICTED: DNA nucleotidylexotransferase isoform 2 [Canis lupus
familiaris]
Length = 510
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 170/358 (47%), Gaps = 40/358 (11%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F L Y + S ++ +A V++ LPF I S +G+P +G ++
Sbjct: 164 NYNNVFTDAFEVLAENYEFRENEVFSLTFMRAASVLKSLPFTIISMKDTEGIPCLGDQVK 223
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ S
Sbjct: 224 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKS 283
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 284 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVGAFLPDAFVTMTGGFRRGKKMGH 343
Query: 375 DLDVVIMHPDR--KSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YF 427
D+D +I P + + L K + L E K L DL+ ST + S VD +F
Sbjct: 344 DVDFLITSPGSTDEDEEQLLPKVI-NLWERKGLLLYCDLVESTFEKLKLPSRKVDALDHF 402
Query: 428 GLCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
C + +L H R+D + P + AF L+ WTG+
Sbjct: 403 QKC-FLILKLHHQRVDGGKCSQQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRFERDLR 461
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R + + LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 462 RYASHERKMILDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|33356563|gb|AAA68599.2| DNA polymerase beta [Crithidia fasciculata]
Length = 376
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 171/375 (45%), Gaps = 60/375 (16%)
Query: 200 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSMQDH 258
+NI IF ++ ++ ALGE + SY ++I ++ L + + +K G G +
Sbjct: 13 ENIIRIFQEMADLNNALGEKYKVSSYLRSIESLKTNLDKPLNTPQDLKAFSGFGAKLLKK 72
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE--- 314
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L +
Sbjct: 73 AEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELLQKADS 131
Query: 315 -DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKA 371
SLT QR+G+KYF DI +IP E E L++ EVL + I +C GSYRR
Sbjct: 132 ISSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCLEVLGKDYTIAIC-GSYRRRHP 190
Query: 372 SCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD 424
GD+D ++ + + G L YV+ L++ +L E G
Sbjct: 191 FSGDVDALLSRTHDAPPLSEPVAATGVLGNYVEHLEKTNYL----------EATMAQGPL 240
Query: 425 TYFGLCTYPGRELR-------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
Y G+ P R +R R+D ++ ++ +TG+ N +R
Sbjct: 241 KYMGMGRLPPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQA 300
Query: 472 AESKGYRLDDTGLF--------PATYGSGGKQGVRARTSL----------KFD--TEKEV 511
A +KGY L++ GLF A Y G +G A L + D +E++V
Sbjct: 301 AIAKGYLLNEYGLFRLGTPEEARALYERVGIKGKNAGEELGVPKEELEDKRVDVRSEQDV 360
Query: 512 FDFLGFPWLEPHERN 526
FD LG P+ +P R+
Sbjct: 361 FDALGMPYAKPENRD 375
>gi|395828367|ref|XP_003787354.1| PREDICTED: DNA nucleotidylexotransferase [Otolemur garnettii]
gi|139001511|dbj|BAF51681.1| deoxynucleotidyltransferase, terminal [Otolemur garnettii]
Length = 511
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 170/362 (46%), Gaps = 46/362 (12%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+ N T+ F + Y + S ++ +A V++ LPF I S +G+P +G +++
Sbjct: 163 NCNHIFTDAFEIMAENYEFRENEGYSAAFMRAASVLKSLPFTIISMKDTEGVPCLGDNVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEEGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LRFTRMQQAGFLYYEDLVSCVTRAEAEAVGVLVKEAVRAFLPDAFVTMTGGFRRGKNIGH 342
Query: 375 DLDVVIMHP---------------DRKSHKGFL-------SKYVK-KLKEMK------FL 405
D+D +I P D KG L S + K KL K F
Sbjct: 343 DVDFLITSPGSTEEEEQQLLHKIMDLWEKKGLLLYCDLVESTFEKLKLPSRKVDALDHFQ 402
Query: 406 REDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN 465
+ LIF H + DS T+ R+D + P + A+ L+ WTG+
Sbjct: 403 KCFLIFKLHHQRVVDSEQSNQQEGKTWKA----IRVDLVMCPYERRAYALLGWTGSRQFE 458
Query: 466 RRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
R LR A + LD+ GL+ T R LK ++E+E+F LG ++EP E
Sbjct: 459 RDLRRYATHERKMILDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPWE 508
Query: 525 RN 526
RN
Sbjct: 509 RN 510
>gi|291404551|ref|XP_002718596.1| PREDICTED: terminal deoxynucleotidyltransferase [Oryctolagus
cuniculus]
Length = 510
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 180/382 (47%), Gaps = 47/382 (12%)
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRS----FSYYKAIPVIE 233
+P + H I++ + LN N IF I E R + ++ +A V++
Sbjct: 142 APALAVHRISEYAC-KRRTTLN-NCNRIFTDAFEILAENSEFRENEDSYVTFIRAASVLK 199
Query: 234 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 293
LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ + LF V+G+G
Sbjct: 200 SLPFPIVSMKDTEGIPCLGDKVKGIIEEIIEEGESSEVKAVLNDERYQCFKLFTAVFGVG 259
Query: 294 PATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 351
T++K + G RTL ++ + SL T Q+ G +Y++D+ + + R E E ++ L+++A
Sbjct: 260 LKTSEKWFRMGFRTLSKIREDKSLKFTRMQQAGFRYYEDLVSCVTRAEAEAVDVLVKEAV 319
Query: 352 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD--RKSHKGFLSKYVKKLKEMK--FLRE 407
LP I G +RRGK D+D +I P+ + + L K V L E K L
Sbjct: 320 RAYLPGAFITMTGGFRRGKKIGHDVDFLITSPESTEEDEQQLLHKVV-NLWEKKGLLLYH 378
Query: 408 DLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH-------------------RIDFKV 445
D + ST + S VD +F C + +L H R+D +
Sbjct: 379 DFMESTFEKLKQPSRKVDALDHFQKC-FLILKLPHERVDSDRPSQQEGKNWKAIRVDLVM 437
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 504
P + +AF L+ WTG+ R LR A + LD+ L+ T R L+
Sbjct: 438 CPYECHAFALLGWTGSRQFERDLRRYATHERRMILDNHALYDKT----------KRMFLQ 487
Query: 505 FDTEKEVFDFLGFPWLEPHERN 526
++E+E+F LG ++EP ERN
Sbjct: 488 AESEEEIFAHLGLDYIEPWERN 509
>gi|40218593|gb|AAG53984.2| terminal deoxynucleotidyl transferase [Ginglymostoma cirratum]
Length = 522
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 149/348 (42%), Gaps = 58/348 (16%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ +A +++ LP+ I + GLP G + I+EI+ G SK++ DEK +
Sbjct: 187 AFARATSLLKSLPYTISKMAALDGLPCFGDQTRAIIEEILEDGVSSKVDDLLCDEKYKAR 246
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 341
LF V+G+G TA K Y +G RTL+ +K L T Q+ G Y++DI + R E E
Sbjct: 247 KLFTSVFGVGLKTADKWYGQGFRTLEAVKASKDLKFTKMQKAGFLYYEDINNAVTRPEAE 306
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK--- 398
+ ++++ P+ I+ G +RRGK + D+D +I P+ + FL K V K
Sbjct: 307 AVAQIIETIVHNYAPDAIVTLTGGFRRGKETGHDVDFLISCPETMD-ENFLRKIVNKLDF 365
Query: 399 ------------------------------------LKEMKFLREDLIFSTHSEEG---T 419
LK K L ++ + S S T
Sbjct: 366 RGLLLYYDMVEATFEKRKLSSQKYDAMDHFQKCFLILKLNKALVKNRVLSMSSVSAARPT 425
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYR 478
D G + + + R+D + P +A+ L+ WTG+ R LR K
Sbjct: 426 DEGAEPEVKTQIKDWKAI--RVDLVIVPTQQFAYALLGWTGSRQFERDLRRYTNHEKSMI 483
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LD+ GL+ + + L TE+E+F L ++EP ERN
Sbjct: 484 LDNHGLYDR----------KKKIFLNAKTEEEIFAHLDLEYIEPWERN 521
>gi|344243158|gb|EGV99261.1| DNA nucleotidylexotransferase [Cricetulus griseus]
Length = 432
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 147/312 (47%), Gaps = 36/312 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ +A V+ LPF I S +G+P +G ++ I+ I+ G+ S++ DE+ ++
Sbjct: 147 AFMRAAAVLRSLPFPIISVKDTEGIPCLGDKVKCIIEGIIEDGESSEVIAVLNDERYKSF 206
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 341
LF V+G+G TA+K + G RTL +K+++SL T Q+ G Y++D+ + + R E E
Sbjct: 207 KLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDESLRFTRMQKAGFLYYEDLVSCVNRAEAE 266
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRR-GKASCGDLDVVIMH----PDRKSHKGFLSKYV 396
+ L+++A LP+ ++ G +RR G DL P RK L +
Sbjct: 267 AINVLVKEAVAVFLPDALVTMTGGFRRQGLLLYCDLIESTFEKFKLPSRKVDA--LDHFQ 324
Query: 397 KKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGL 455
K +K H G+D G+ + R+D + P D AF L
Sbjct: 325 KCFLILKLY--------HQRVGSDESSQQ-------EGKGWKAIRVDLVMCPYDRRAFAL 369
Query: 456 IAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
+ WTG+ R LR A + LD+ L+ T R L+ D+E+E+F
Sbjct: 370 LGWTGSRQFERDLRRYATHERKMMLDNHALYDKT----------KRVFLEADSEEEIFAH 419
Query: 515 LGFPWLEPHERN 526
LG ++EP ERN
Sbjct: 420 LGLDYIEPWERN 431
>gi|327280070|ref|XP_003224777.1| PREDICTED: DNA nucleotidylexotransferase-like [Anolis carolinensis]
Length = 527
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 174/384 (45%), Gaps = 41/384 (10%)
Query: 169 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 228
T T+ S D S + N + NK T+ F L Y ++ +A
Sbjct: 158 TKISDTSPLSTDIVSQYACQRRTTLN--NYNKKYTDAFEILAENYEMRENAGACLAFRRA 215
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 288
V++ LPF I ++ ++GLP +G+ ++ I++I+ G+ K+E +EK R+ LF
Sbjct: 216 ASVLKFLPFAIVRSNDIEGLPWMGEQVKGIIEDILEEGQSPKVEAVLNNEKYRSFKLFTS 275
Query: 289 VWGIGPATAQKLYEKGHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
V+G+ T++K + G R L+D+K N++ LT Q+ GL++++D+ + + + E + +
Sbjct: 276 VFGVALKTSEKWFMMGLRNLEDVKLNQNLQLTRMQKAGLQHYEDLISYVSKAEADSTSLM 335
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK------------GFLSK 394
++ + P ++ G +RRGK D+D +I P + ++ S
Sbjct: 336 VKDTVWKFSPSALVTLTGGFRRGKKMGHDVDFLITVPGSRPNEELLHLGLLLYYDLIEST 395
Query: 395 YVK-KLKEMK------FLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH----RIDF 443
+ K KL + F + I H E + G T E++ R+D
Sbjct: 396 FEKSKLPSQRVDALDHFQKCFAILKLHKER-VNQG--TSLPPVASTVEEIKDWKAIRVDL 452
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
V P + +AF L+ WTG+ R LR A K LD+ L+ T +
Sbjct: 453 VVSPFEQHAFALLGWTGSRQFERDLRRYATHEKKMMLDNHALYDKT----------KKIF 502
Query: 503 LKFDTEKEVFDFLGFPWLEPHERN 526
L +E+E+F LG +LEP ERN
Sbjct: 503 LSASSEEEIFAHLGLDYLEPWERN 526
>gi|54766|emb|CAA27735.1| DNA nucleotidylexotransferase [Mus musculus]
Length = 529
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 171/368 (46%), Gaps = 44/368 (11%)
Query: 201 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N ++F ++I E R + ++ A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMGASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y++D+ + + R E + + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTKMQKAGFLYYEDLVSCVNRPEAQAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 375 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFG 428
D+D +I P+ + L K K+ L D++ ST + S VD +F
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTHFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 429 LCTYPGRELRH-------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
C + +L H R+D + P + A L+ WTG+ R LR
Sbjct: 403 KC-FLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYEC-ACALLGWTGSRQFERDLR 460
Query: 470 LLA-ESKGYRLDDTGLFPATYGSG----------GKQGVRARTSLKFDTEKEVFDFLGFP 518
A + LD+ L+ T G K R L+ ++E+E+F LG
Sbjct: 461 RYATHERKMMLDNHALYDRTKGKTVTISPLDGKVSKLQKALRVFLEAESEEEIFAHLGLD 520
Query: 519 WLEPHERN 526
++EP ERN
Sbjct: 521 YIEPWERN 528
>gi|402878106|ref|XP_003902744.1| PREDICTED: DNA polymerase beta-like, partial [Papio anubis]
Length = 218
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 106/208 (50%), Gaps = 37/208 (17%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD------- 309
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEGSQLDSC 130
Query: 310 ----------------------------DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
DL KNED L H QR+GLKYF D + RIPR E+
Sbjct: 131 PIKGHLNGTKSLLDLIWDVTTIFKLKNADLRKNEDKLNHHQRIGLKYFGDFEKRIPREEM 190
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRR 368
QM+ ++ ++V E I GS+RR
Sbjct: 191 LQMQDIVLNEVKKVDSEYIATVCGSFRR 218
>gi|164660955|ref|XP_001731600.1| hypothetical protein MGL_0868 [Malassezia globosa CBS 7966]
gi|159105501|gb|EDP44386.1| hypothetical protein MGL_0868 [Malassezia globosa CBS 7966]
Length = 397
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 166/345 (48%), Gaps = 17/345 (4%)
Query: 144 AESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD----FSSHHITDPSLLYNPPDLN 199
++S+ ++ N + +P S + + + ASP+ S + I P+ L +P N
Sbjct: 26 SKSRQSIDPNHFDDPDATPTPSPTW---IDSQEASPNQGWVNSDYAIFRPTPLVSP--WN 80
Query: 200 KNITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKLPFKIESAD--QVKGLPGIGKSMQ 256
+ + + + + ++R L D S +Y +A ++ P+ +++ D Q+K + GIG M
Sbjct: 81 QPLVDEL-ECVRMHRRLTRDAHSEMAYLRAASAVKAAPYPLKALDEMQLKAIKGIGPKMI 139
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
IQ+ G + + E D V+T+ F ++ G+GP +++LY++G RTL+D+
Sbjct: 140 TVIQQFYEHGYIPEAEIIRNDRAVQTMFHFMKLHGVGPHMSERLYKEGCRTLEDVILTGK 199
Query: 317 LTHSQRLG----LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
+ + RLG L D+ IPR +VE + + + + ++ + G YRRGK
Sbjct: 200 MEFANRLGPSISLSMLPDLLRPIPRAQVECIRNDILRVLDGLVSNAQAVIVGGYRRGKEL 259
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
GD+D+V+ +S L V L++ + L S H+E+ V T
Sbjct: 260 SGDVDLVVSSSSEESATTLLHALVHSLRDAGKVSHTLALSRHTEDHRLVDVAEIVYADTS 319
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
G+++ R+D R ++AWTG+ + R LR A+++GY
Sbjct: 320 SGKQMHRRVDIVYAVRAYLGAAILAWTGSSLYERDLRRWAQTRGY 364
>gi|238577375|ref|XP_002388369.1| hypothetical protein MPER_12617 [Moniliophthora perniciosa FA553]
gi|215449591|gb|EEB89299.1| hypothetical protein MPER_12617 [Moniliophthora perniciosa FA553]
Length = 372
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 147/342 (42%), Gaps = 41/342 (11%)
Query: 203 TEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI 262
T+ F +NI++ ++R S A P P E+ D V LP +G I+E
Sbjct: 1 TQRFAVGLNIFK----NKRVLSGRIAYPK----PITSENVDDVAKLPFVGDKALFKIKEY 52
Query: 263 VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL----------- 311
+ TG +S+ + ++ ++++ F + GIG TA+KLY RTL DL
Sbjct: 53 LHTGHISEAQTILASQRYQSLTAFTSIHGIGSITARKLYSMNLRTLQDLDVYYDVYSPSI 112
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
LT L L+ +D+ +IPR EVE M + +E+ + G YRRGK
Sbjct: 113 STCKDLTIQVALALR--NDLSQKIPREEVEAMRDTVMNELDEIKKGCVCTITGGYRRGKQ 170
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD------SGVDT 425
D+D+V HPD S KG + +KL + + ++ + TH D S ++
Sbjct: 171 ESNDVDIVFTHPDLASEKGEVKVLAEKLIKRLYDKDLITHVTHLSSFRDPKKLRTSHLNL 230
Query: 426 YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGL 484
T +E R+D + Y ++ WTG+ + R LRL A + +G + D
Sbjct: 231 VEKALTVFRQEKSRRLDLIFTAPEAYWCAVVGWTGSKLFERDLRLWAKQERGMKFD---- 286
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
K R + +VF F G W++P RN
Sbjct: 287 ---------KPAYTIRNTFFPKANMKVFRFWGLEWIDPEWRN 319
>gi|340053717|emb|CCC48010.1| putative mitochondrial DNA polymerase beta [Trypanosoma vivax Y486]
Length = 407
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 20/311 (6%)
Query: 190 SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGL 248
+ L + PD +NI IF ++ + ALGE + SY +A+ ++ L + + + ++
Sbjct: 5 TFLRSAPDNRENIIRIFMEMAELNNALGEKYKVHSYNRAVRSLKTHLDLPLRTVEDLERF 64
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 307
PG G + +EI+TTGKL +LE K K+R I ++ G GP A L+++ G T
Sbjct: 65 PGFGAKLVKKAEEIITTGKLEELEKKTKP-KLRAIQELTQIHGFGPRAAASLFDREGIFT 123
Query: 308 LDDL---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILC 362
+++L + LT QR+G++YF DI +IP HE E L++ L I +C
Sbjct: 124 VEELIEKADRIQLTDQQRVGVRYFHDINEKIPMHESVLHENFLRECSLRRLGSDYEIQIC 183
Query: 363 GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GSYRR GD+D ++ R + L V + L E L+ + E G
Sbjct: 184 -GSYRRRHPFSGDIDAILA---RTRNAPPLDGPVTTTGVLNVLVEYLLEQKYLEATMALG 239
Query: 423 VDTYFGLCTYP----GRELRH----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
Y G+ P G +H R+D ++ L+ +TG+ N +R A S
Sbjct: 240 PLKYMGMGRLPPRTTGGATKHYKARRVDIRLIETKSVPTALLTFTGSKNFNVIMRQAAIS 299
Query: 475 KGYRLDDTGLF 485
+GY L++ GLF
Sbjct: 300 RGYLLNEYGLF 310
>gi|149040157|gb|EDL94195.1| deoxynucleotidyltransferase, terminal [Rattus norvegicus]
Length = 500
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 152/317 (47%), Gaps = 27/317 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ T+ F L Y + + +A V++ L F I S ++G+P +G ++
Sbjct: 165 NQLFTDAFDILAENYEFRENEVSCLPFMRAASVLKSLSFPIVSMKDIEGIPCLGDKVKCV 224
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 317
I+ I+ G+ S+++ DE+ ++ LF V+G+G TA+K + G RTL +K++ SL
Sbjct: 225 IEGIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDKSLR 284
Query: 318 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
TH Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK + D+
Sbjct: 285 FTHMQKAGFLYYEDLVSCVNRAEAEAVSMLVKEAVVAFLPDALVTMTGGFRRGKMTGHDV 344
Query: 377 DVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGTDS-GVDT--YFGLC 430
D +I P+ + + L K ++ L D+I ST + S VD +F C
Sbjct: 345 DFLITSPEATEEEEQQLLHKVTNFWRQQGLLLYCDIIESTFEKFKLPSRKVDALDHFQKC 404
Query: 431 -----------------TYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
G++ + R+D + P + AF L+ WTG+ R LR A
Sbjct: 405 FLILKLHRGLVRSEESGQQEGKDWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRRYA 464
Query: 473 -ESKGYRLDDTGLFPAT 488
+ LD+ L+ T
Sbjct: 465 THERKMMLDNHALYDKT 481
>gi|342181097|emb|CCC90575.1| putative mitochondrial DNA polymerase beta [Trypanosoma congolense
IL3000]
Length = 408
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 107/408 (26%), Positives = 175/408 (42%), Gaps = 90/408 (22%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGLPGIGKSM 255
D +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G +
Sbjct: 12 DNRENIIRIFSEMADLNNALGEKYKVQSYNRAVRSLKTHLDLPLRTVEDLEKFPGFGSKL 71
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL--- 311
+EI+TTGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 72 LKKAEEIITTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAATLFDREGIFTVEELIEK 130
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRG 369
++ LT QR+G++YF DI +IP HE E L++ L I +C GSYRR
Sbjct: 131 ADQIQLTEQQRVGVRYFHDINEKIPMHESVLHENFLRECALRRLGSDYEIQIC-GSYRRR 189
Query: 370 KASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + + G L+ V+ L+E ++L + G
Sbjct: 190 HPFSGDIDAILARSLKAPPLDAPVTTTGVLTVLVEYLQEQRYLEATMAL----------G 239
Query: 423 VDTYFGLCTYPGREL--------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
Y G+ P R R+D ++ L+ +TG+ N +R A S
Sbjct: 240 PLKYMGMGRLPPRTTGNTTKTYKARRVDIRLIESKSVPTALLTFTGSKNFNVIMRQAAIS 299
Query: 475 KGYRLDDTGLF-------------------------PA--------TYGSGGKQGVR--- 498
+GY L++ GLF PA + GS ++G
Sbjct: 300 RGYLLNEYGLFKVGTSEEVRALQERVRANKAAGGDRPAGELDDPYSSSGSAAEEGAEPFV 359
Query: 499 ---ARTSLKFDT-----------------EKEVFDFLGFPWLEPHERN 526
+ S K +T EK+VFD LG P+ +P R+
Sbjct: 360 SSISGNSAKMETLGLTKEELEAKRVHVTCEKDVFDVLGMPYAKPENRD 407
>gi|410903980|ref|XP_003965471.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Takifugu
rubripes]
Length = 522
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 161/380 (42%), Gaps = 62/380 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +TE L ED R+ ++ ++ V++ LP + + ++GLP +G+
Sbjct: 152 NTVLTEALSLLAENAELNEEDGRAIAFRRSEAVLKALPKAVTNLADLRGLPCLGEHSLKI 211
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
I++++ G S++E + ++ + + + ++G+G TA + + G TL L+ +L
Sbjct: 212 IKDVLKDGVSSEVETTRQSDRYKALKVLTGIFGVGAKTADRWIKMGISTLHQLQASGQTL 271
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
+Q+ GL++++D+ + + E + + ++QK VLP +I G +RRGK + D+D
Sbjct: 272 NQAQQAGLEHYEDLNQPVAKAEADAIGDVVQKVVLSVLPGALITLIGGFRRGKPTGHDVD 331
Query: 378 VVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEEGTDSGVDTY----- 426
+I HP+ G L K LK FL R + S S +D +
Sbjct: 332 FLITHPEEGREVGLLPKVASLLKSQGFLLYQKTTRNSYLESDDGPARLSSNMDRFERCFS 391
Query: 427 -FGLCTYPG-------------------------------------RELRH-RIDFKVYP 447
F L PG R R R+D V P
Sbjct: 392 IFKLEMNPGTTRSGTPRSSSRTESQSDDHSPQTPGEVHENGLESRRRSWRAVRVDLVVSP 451
Query: 448 RDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 506
+AF L+ WTG+ + R +R A K L L+ + R L+
Sbjct: 452 ISQFAFALLGWTGSKLFEREMRRWAGHEKAMSLSSHALY----------DTKQRRYLRAA 501
Query: 507 TEKEVFDFLGFPWLEPHERN 526
+E+E+F LG ++ P +RN
Sbjct: 502 SEEEIFAHLGLEYIPPSQRN 521
>gi|426197680|gb|EKV47607.1| hypothetical protein AGABI2DRAFT_118163 [Agaricus bisporus var.
bisporus H97]
Length = 577
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 163/373 (43%), Gaps = 80/373 (21%)
Query: 222 SFSYYKAIPVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 278
+ +Y +A+ +I+ P I + ++ LPG+G ++ I+E + G + + E + E
Sbjct: 214 ALAYERAVAIIKSYPSVITRDNFRQEISKLPGVGSKVRSKIEEFINNGTIEETETTLESE 273
Query: 279 KVRTISLFGEVWGIGPATAQKLYEKGHRT------------------LDDLKNEDSLTHS 320
+ R++SLF V+GIGP+ A+ LYE G R+ LDD++++ +
Sbjct: 274 RYRSLSLFNTVYGIGPSAARHLYELGLRSVGDLERYYDVPQGANASQLDDIESQTFTPNG 333
Query: 321 QRLGLKYF-------------------DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 361
+ + LK F +D+ T IPR E+E++ R++ E+V
Sbjct: 334 RPVPLKSFTEGNAKIPPISVKVALALREDLNTPIPRAELEEIHRVIMSELEQVQAGCTST 393
Query: 362 CGGSYRRGKASCGDLDVVIMHPDRK----SHKGFLSKYVKKLKEMKFLREDLI---FSTH 414
G +RRGK D+D+VI H D S KG +K V++L + + + F +H
Sbjct: 394 VVGGHRRGKLESNDMDIVITHSDMHQGTGSIKGMAAKLVERLYKRGLVTHVMHLSGFHSH 453
Query: 415 SEEGTDSGVDTYFGLCTY------------------PGRELRHRIDFKVYPRDIYAFGLI 456
+ T+ L + R L R+D P + Y ++
Sbjct: 454 NPLRTEHWDSLEKALTVFRLPASSTASQSQSSEAGSQTRRLYRRLDLIFAPPEAYWTAVV 513
Query: 457 AWTGNDVLNRRLRLLAE-SKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFD 513
W+G+ + R LRL A+ KG + D +GL R S F + E++VF
Sbjct: 514 GWSGSRLFERDLRLWAKVEKGMKFDSSGL------------TRRHDSKLFVPENEEDVFK 561
Query: 514 FLGFPWLEPHERN 526
LG W++P RN
Sbjct: 562 ILGLEWVDPTLRN 574
>gi|260817830|ref|XP_002603788.1| hypothetical protein BRAFLDRAFT_59678 [Branchiostoma floridae]
gi|229289111|gb|EEN59799.1| hypothetical protein BRAFLDRAFT_59678 [Branchiostoma floridae]
Length = 430
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 134/286 (46%), Gaps = 52/286 (18%)
Query: 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHE 339
T+ LF ++G+G ATA+K YE+G RTLDD++N+ SL Q +GL+ + D+ T + E
Sbjct: 157 TMQLFTGIFGVGSATARKWYERGFRTLDDIRNDSTLSLKKDQTIGLELYQDLNTPVTLAE 216
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
+ ++ +++ +++LP ++ G +RRGK D+D++I HP G LS + KL
Sbjct: 217 ADIIQEMVRAEVQKLLPGATVVLTGGFRRGKTKGHDVDLLISHPTEGKETGLLSAVLAKL 276
Query: 400 KEMKFLREDLI-------FSTHSEEGTDSGVDTYFGLCTYPGRELRH------------- 439
+E L + S +E T + F + P +L H
Sbjct: 277 REKDLLAYETTSANTYDPSSVSRKEYTLDHFERCFSIFNSP--DLLHHEGKVSLERAGGT 334
Query: 440 -----------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDD 481
R+D + P YA+ L+ WTG+ NR LRL A+++ +L +
Sbjct: 335 AGFLDGEKTEEKTWIGRRVDLIIAPASQYAYALVGWTGSKHFNRSLRLYADNEMNMKLTN 394
Query: 482 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
L Y S Q + A +E++VF L P+ EP ERN
Sbjct: 395 HVL----YDSVKNQYLPA------SSEEDVFLHLQLPYREPAERNC 430
>gi|347841318|emb|CCD55890.1| similar to terminal deoxynucleotidyl transferase [Botryotinia
fuckeliana]
Length = 683
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 122/529 (23%), Positives = 212/529 (40%), Gaps = 102/529 (19%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD-----------RVLSQIQGNGNTSS 122
V++ W DS+R G + D Y I EG + + R + + G+ N
Sbjct: 177 VLKIDWYFDSIREGMLLPIDKYLIY---EGRRVVEPPKFLPSDLLTRAAADLGGSPNPKY 233
Query: 123 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 182
++ K T F ES T+ + SP E L S +P
Sbjct: 234 GPHYRQQQSRKPLTRPA--FLTES-----TSEHDDPSYSPPVPEYLKTIYSCERPTP--- 283
Query: 183 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 242
+T P N P +N+ T +L++ G+ +Y +I I P+ + S
Sbjct: 284 ---LTSP----NDPFINQLKTIKLKRLLD-----GDPIGVRAYSTSIASIAAYPYPLHSP 331
Query: 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 301
+++ LPG + + + + + + TG ++ FE++ +++ + F +WG+ TA++ +
Sbjct: 332 NELIRLPGCDQKIANLLHQFLNTGTTDEVFDFEQNPRMQVLKTFYNIWGVADITAREFHD 391
Query: 302 EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
++ + LDD+ E + L Q++G+KY++++ T IPR E E + ++ + P
Sbjct: 392 QREWKDLDDIVVEGWNDLKPVQKIGVKYYEELNTPIPRCETEAIGSIILSEARRIDPGFQ 451
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST-HSEEG 418
++ G YRRGK GD+D+++ H D K GFL + +L+E ++ L+ S +SE G
Sbjct: 452 MVIVGGYRRGKLESGDVDIMLTHRDEKRTLGFLPELTWRLEEQGWITNILLESMKNSERG 511
Query: 419 T---------DSGVDTYF-----GLCTYPGRELR--------------------HRIDFK 444
DS T F L + R R+D
Sbjct: 512 QWAVELGWKKDSARKTGFDSLDKALVVWQDINFRIEEEEGEGKERKKRKNPNPHRRVDII 571
Query: 445 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYG------------- 490
+ P +I W+G R LR ++K +R D +G+ G
Sbjct: 572 ITPWKTAGAAIIGWSGGTTFQRDLRKYCKAKRNWRFDSSGIRERGTGEWVDLEGGVEGEG 631
Query: 491 -------SGGKQGVRARTSLKFDT-------EKEVFDFLGFPWLEPHER 525
GGK+ ++ D E VF +G W EP ER
Sbjct: 632 PAKRDAEGGGKESGNTEGRMENDMIEILRKKEMAVFKGIGLEWREPWER 680
>gi|344274915|ref|XP_003409260.1| PREDICTED: DNA nucleotidylexotransferase-like [Loxodonta africana]
Length = 509
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 154/329 (46%), Gaps = 38/329 (11%)
Query: 225 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 284
+ +A V++ LPF I S +G+P + + I++I+ G+ S+++ DE+ ++
Sbjct: 191 FMRAASVLKSLPFTIISMKDTQGIPCLEDKAKCVIEDIIEDGESSEVKAVLNDERYKSFK 250
Query: 285 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQ 342
LF V+G+G T++K + G R+L ++ + +L T Q G Y++D+ + + + E +
Sbjct: 251 LFTSVFGVGLKTSEKWFRMGFRSLSKIRTDKTLKFTEMQEAGFLYYEDLVSCVTKAEADA 310
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYVKKL- 399
+ L+++A LP+ + G +RRGK D+D +I + + L K +
Sbjct: 311 VSVLVKEAVWAFLPDAFVTMTGGFRRGKKVGHDVDFLITSQGSTEEEQQQLLHKVLNLWK 370
Query: 400 KEMKFLREDLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH----------------- 439
KE L DLI ST + S VD +F C + +L H
Sbjct: 371 KEGLLLYSDLIESTFEKLKLPSRKVDALDHFQKC-FLILKLHHQRIDNSKSSQLQGKTWK 429
Query: 440 --RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
R+D + P + +AF L+ WTG+ R + + LD+ L+ T
Sbjct: 430 AIRVDLVMCPYECHAFALLGWTGSRFERDIRRYASHERKMILDNHALYDKT--------- 480
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LK +E+E+F LG ++EP ERN
Sbjct: 481 -KRIFLKAGSEEEIFAHLGLDYIEPWERN 508
>gi|328873769|gb|EGG22135.1| pleckstrin domain-containing protein [Dictyostelium fasciculatum]
Length = 1211
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 24/245 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK +T+I ++ + G + +Y KAI I+ P KI S + K L G+G +
Sbjct: 102 NKLLTDILLQVGIFEKNKGATHKYNAYRKAIQSIQSYPKKITSGQESKKLDGVGLKISQK 161
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 317
+QEI+ TGKL KLE + +E ++ + I T + E+ +T+ DL+ +L
Sbjct: 162 VQEILDTGKLKKLEKLQSNE------IYMAINEICKLTKNLVMEQNIKTIADLRKISHTL 215
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
H Q++GLKYFDDI+ R+PR E+E++E +++K + + +I GSYRRG + GD+D
Sbjct: 216 NHHQQIGLKYFDDIEQRVPREEIEEIEAIVKKCLKTIDKSIIADTCGSYRRGTPNSGDID 275
Query: 378 VVIMHPD-------RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
+++ HP+ +K+ + + V LK+ K + +D+ G Y G C
Sbjct: 276 ILLSHPNYTIQQKTKKNTFKIMERLVDALKKEKIIVDDISL----------GPMKYMGCC 325
Query: 431 TYPGR 435
P +
Sbjct: 326 VCPPK 330
>gi|71666008|ref|XP_819968.1| mitochondrial DNA polymerase beta [Trypanosoma cruzi strain CL
Brener]
gi|70885292|gb|EAN98117.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
gi|407832614|gb|EKF98512.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
Length = 403
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 147/313 (46%), Gaps = 36/313 (11%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 254
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 311
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 312 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGSYRRR 189
Query: 370 KASCGDLDVVIM---------HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD 420
GD+D ++ +P ++ G L V L+E +L E
Sbjct: 190 HPFSGDVDAILARTLSAPPLDYP--VTNTGVLGTLVDYLQERNYL----------EATMA 237
Query: 421 SGVDTYFGLCTYPGRELR--------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
G Y G+ P R R+D ++ L+ +TG+ N +R A
Sbjct: 238 QGPLKYMGMGRLPPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAA 297
Query: 473 ESKGYRLDDTGLF 485
SKGY L++ GLF
Sbjct: 298 ISKGYLLNEYGLF 310
>gi|71650066|ref|XP_813738.1| mitochondrial DNA polymerase beta [Trypanosoma cruzi strain CL
Brener]
gi|70878652|gb|EAN91887.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
Length = 403
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 34/312 (10%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 254
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 311
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 312 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRR 368
+ LT QR+G+KYF DI +IP HE E L+++ + L I +C GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVC-GSYRR 188
Query: 369 GKASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
GD+D ++ ++ G L V L+E +L E
Sbjct: 189 RHPFSGDVDAILARTLSAPPLDCPVTNTGVLGTLVDYLQERNYL----------EATMAQ 238
Query: 422 GVDTYFGLCTYPGRELR--------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
G Y G+ P R R+D ++ L+ +TG+ N +R A
Sbjct: 239 GPLKYMGMGRLPPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAAI 298
Query: 474 SKGYRLDDTGLF 485
SKGY L++ GLF
Sbjct: 299 SKGYLLNEYGLF 310
>gi|72389310|ref|XP_844950.1| mitochondrial DNA polymerase beta [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|34014750|gb|AAQ56191.1| DNA polymerase beta [Trypanosoma brucei]
gi|62358911|gb|AAX79362.1| mitochondrial DNA polymerase beta [Trypanosoma brucei]
gi|70801484|gb|AAZ11391.1| mitochondrial DNA polymerase beta [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261328277|emb|CBH11254.1| mitochondrial DNA polymerase beta [Trypanosoma brucei gambiense
DAL972]
Length = 407
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 34/311 (10%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGLPGIGKSM 255
D +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PGIG +
Sbjct: 12 DNRENIIRIFTEMADLNNALGEKYKVQSYNRAVRSLKTHLDLPLRTVEDLEKFPGIGSKL 71
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL--- 311
+EI+ TGKL +LE K K++ I ++ G GP A L+++ G T++DL
Sbjct: 72 LKKAEEIIRTGKLDELEKKTKP-KLKAIQELTQIHGFGPRAAATLFDREGIFTVEDLIEK 130
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRG 369
++ LT QR+G++YF DI +IP HE E L++ L I +C GSYRR
Sbjct: 131 ADQIQLTEQQRVGVRYFHDINEKIPMHESILHENFLRECALRRLGSDYEIQIC-GSYRRR 189
Query: 370 KASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + G L+ V+ L+E ++L + G
Sbjct: 190 HPFSGDIDAILARSLNAPPLDAPVTTTGVLTILVEYLQEQRYLEATMAL----------G 239
Query: 423 VDTYFGLCTYPGREL--------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
Y G+ P R R+D ++ L+ +TG+ N +R A S
Sbjct: 240 PLKYMGMGRLPPRTTGGATKTYKARRVDIRLIETKSVPTALLTFTGSKNFNVIMRQAAIS 299
Query: 475 KGYRLDDTGLF 485
KGY L++ GLF
Sbjct: 300 KGYLLNEYGLF 310
>gi|320589082|gb|EFX01550.1| hypothetical protein CMQ_6492 [Grosmannia clavigera kw1407]
Length = 686
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 117/227 (51%), Gaps = 5/227 (2%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
+PP N+ + K+ I +G++ +Y AI + P + SA +V LPG G
Sbjct: 283 HPP--NEKFIDSLKKIQRIRELMGDEIGVRAYSTAIASLAAYPHVLSSAAEVSRLPGCGP 340
Query: 254 SMQDHIQEI-VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+ + +E T G + + + E D K+ + LF ++WG+ ATA+ + +G R LDD+
Sbjct: 341 KIAELYREYSATGGHVQEADDAESDPKICVLRLFCDIWGVAEATARSFHNRGWRDLDDVV 400
Query: 313 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 370
L Q++G+KY+D+++ + R +V+ + + + ++ P ++ G YRRGK
Sbjct: 401 EFGWSELGRVQQIGVKYYDELQMTMTRAQVKDIANTVLEQANQIFPGFQMVIAGGYRRGK 460
Query: 371 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
GD+DV++ HPD ++ + + V L+ + + L ST + E
Sbjct: 461 KMNGDVDVILSHPDEEATHLVIGRLVLALERIGRITHTLTLSTANSE 507
>gi|229463112|gb|ACQ66108.1| DNA polymerase beta [Trypanosoma cruzi]
Length = 403
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 147/313 (46%), Gaps = 36/313 (11%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 254
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 311
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 312 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
+ LT QR+G+KYF DI +IP HE E L+++ + L + I G+YRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGTYRRR 189
Query: 370 KASCGDLDVVIM---------HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD 420
GD+D ++ +P ++ G L V L+E +L E
Sbjct: 190 HPFSGDVDAILARTLSAPPLDYP--VTNTGVLGTLVDYLQERNYL----------EATMA 237
Query: 421 SGVDTYFGLCTYPGRELR--------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
G Y G+ P R R+D ++ L+ +TG+ N +R A
Sbjct: 238 QGPLKYMGMGRLPPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAA 297
Query: 473 ESKGYRLDDTGLF 485
SKGY L++ GLF
Sbjct: 298 ISKGYLLNEYGLF 310
>gi|407395989|gb|EKF27316.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi
marinkellei]
Length = 403
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 144/311 (46%), Gaps = 32/311 (10%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 254
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYNRAVHSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 311
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 312 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 369
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLGSDYEIQVCGSYRRR 189
Query: 370 KASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GD+D ++ + G L V L+E +L E G
Sbjct: 190 HPFSGDVDAILARTLSAPPLDFPVTTTGVLGTLVDYLQERNYL----------EATMAQG 239
Query: 423 VDTYFGLCTYPGRELR--------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
Y G+ P R R+D ++ L+ +TG+ N +R A S
Sbjct: 240 PLKYMGMGRLPPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAAIS 299
Query: 475 KGYRLDDTGLF 485
KGY L++ GLF
Sbjct: 300 KGYLLNEYGLF 310
>gi|358059285|dbj|GAA94973.1| hypothetical protein E5Q_01628 [Mixia osmundae IAM 14324]
Length = 441
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 26/271 (9%)
Query: 214 RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 273
R G R + SY AI ++ P ++S + + G G + I E + TG L++ +
Sbjct: 167 RLTGNARSALSYAVAIAALKAYPHMLQSGQEADTIVGTGPKIGALIDEYLRTGTLAEADR 226
Query: 274 FEKDEKVRTISLF-GEVWGIGPATAQKLYEKGH-RTLDDLKN---EDSLTHSQRLGLKYF 328
E+ + + LF V GIGP TA+ L ++ H T DD++ ED + ++ L Y
Sbjct: 227 LERQSRFLALRLFTSSVHGIGPTTARTLVDRFHCLTWDDVERTMREDP--EAPQISLDYR 284
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
D+I +IPR EVE++ L++ +++ P + + G YRRGK D+D++I HP H
Sbjct: 285 DEIAQKIPRSEVEKIHDLVKLQLDKLQPGCLTMLTGGYRRGKPFSNDIDILITHPHDTVH 344
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGT--------------DSGVDTYFGLCTYPG 434
G LSK V +L+ ++E L ++ + + D F + P
Sbjct: 345 -GLLSKLVNRLQHKSLIKEILYYTNQNTNRSFDFESKARSSTSSSFDQFDKCFCIFLPPQ 403
Query: 435 RE----LRHRIDFKVYPRDIYAFGLIAWTGN 461
L R+D V P + Y G++ WTG+
Sbjct: 404 ASGQAALHRRLDLIVSPWENYWTGVVGWTGS 434
>gi|296416884|ref|XP_002838099.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634005|emb|CAZ82290.1| unnamed protein product [Tuber melanosporum]
Length = 598
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 146/334 (43%), Gaps = 18/334 (5%)
Query: 210 INIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK- 267
I + R L D +Y AI ++ P+ + S +V LPG +E +T+
Sbjct: 262 IKLSRVLTSDGVGIRAYSTAIATLQAYPYPLISPSEVSLLPGCDGKSSALFEEYITSPDH 321
Query: 268 -LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLKNED--SLTHSQRL 323
L+ + EK + LF +WG+GP A++ Y+KG +TL+D+ + LT +Q++
Sbjct: 322 GLAVVRELEKSPSFNILKLFSSIWGVGPVGAREFFYDKGWKTLEDIVDHGWGQLTRAQQI 381
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
G+KYFD+ ++ I R+E + ++ KA ++ + G YRRGK D+D+++ H
Sbjct: 382 GVKYFDEFQSPISRNEARDIAAVVGKAAAKLRAGMDYTIVGGYRRGKMEIHDVDILLSHT 441
Query: 384 DRK-SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY--------FGLCTYPG 434
+ G + + V +L+ + L T Y + P
Sbjct: 442 THSMTTGGVVKELVSELEASGHITHTLHLGRELNNTTTINAHRYGFDSLEKALVVFLAPN 501
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGS-- 491
L R+D + P L+ WTG R LRL + + G++ G+F G
Sbjct: 502 SGLHRRVDIILAPPVSVGSALLGWTGGTTFERDLRLWCDKEHGWKFTSEGVFERITGRRV 561
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G G + E+ V + +G WLEP ER
Sbjct: 562 AGVDGTWRVGEKMVEAERRVMEGVGLRWLEPCER 595
>gi|54304023|emb|CAH59754.1| DNA polymerase lambda [Homo sapiens]
Length = 167
Score = 111 bits (278), Expect = 8e-22, Method: Composition-based stats.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 406
+QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL
Sbjct: 1 VQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLT 60
Query: 407 EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLN 465
+DL+ + E G Y G+C PG RH R+D V P +A L+ +TG+ N
Sbjct: 61 DDLV--SQEENGQQQ---KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFN 115
Query: 466 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
R +R LA++KG L + L A + V L TEK+VF LG
Sbjct: 116 RSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGL 167
>gi|405119609|gb|AFR94381.1| beta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 569
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 150/346 (43%), Gaps = 52/346 (15%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
RRS S K +P +I S + L G+G+ + I E + TG++++ + + +
Sbjct: 234 RRSLSMLKC--ESNSVPRRITSGKEALRLQGVGEKVATRIDEFLQTGEIAESQEILESLR 291
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--------------DSLTHSQRLG 324
+ +F V+ IG A++LYE+ H RTL+D+K D R G
Sbjct: 292 FNALQIFASVYTIGHFRAKELYERHHCRTLEDVKRHFADMEKDGEAKKGRDKDKRRMRGG 351
Query: 325 LKYFD----------DIKTRIPRHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASC 373
+K ++ ++ +IPR EVE++ + E +P +CGG YRRGK
Sbjct: 352 MKEYEIVEEWMKLKSELDQKIPRKEVEEIAACVLDNLEAFIPSCEYTICGG-YRRGKTES 410
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEM----KFLREDLIFSTHSEEGTD--------S 421
D+D+V P G L +L E+ LR+ TH +
Sbjct: 411 SDVDIVFRPPKDDQDIGLLRALYLRLSELGIITHVLRDSRPDVTHRDPNQPIRAAAQNFD 470
Query: 422 GVDTYFGLCTYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 480
+D F + PG L R+D PRD YA +++WTG+ + R L+ AE++
Sbjct: 471 NLDKAFVIFKLPGEGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENETGHKF 530
Query: 481 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
GL G + +TE+E+F++LG ++ P RN
Sbjct: 531 RAGLIKIATGE----------EINLETEREIFNYLGLRYIPPELRN 566
>gi|19113889|ref|NP_592977.1| DNA polymerase X family [Schizosaccharomyces pombe 972h-]
gi|1175369|sp|Q09693.1|DPO4_SCHPO RecName: Full=DNA polymerase type-X family protein pol4
gi|1052789|emb|CAA90493.1| DNA polymerase X family [Schizosaccharomyces pombe]
Length = 506
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 154/334 (46%), Gaps = 12/334 (3%)
Query: 200 KNITEIFGKLINIYRAL----GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
K + + F +++ + GE R+ +Y AI I+ P I+SA+Q++ +PG G +
Sbjct: 176 KCVNQAFVNALSVLKTCREVNGESVRTRAYGMAIATIKAFPLPIDSAEQLEKMPGCGPKI 235
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNE 314
+E +TG L + E F+KD + + LF ++G+G + A + Y+KG RT++ + K++
Sbjct: 236 VHLWKEFASTGTLKEAEEFQKDPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRKHK 295
Query: 315 DSLTHSQRLGLKYFDD-IKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
DS T ++GL++++D KT E E ++ + + + + ++ G +RRGK
Sbjct: 296 DSFTKQIKVGLEFYEDFCKTVTIEEATEIYETIVSRMPDGIKIQSCLV--GGFRRGKPVG 353
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
D+D+V+ S K + ++ L E +F + HS G V +
Sbjct: 354 ADVDMVLSPSHTHSTKHLVDVLLRILDE-EFQFRLISVQEHSCGGKKGYV--MLAVILSN 410
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSG 492
++ R+D V P ++ W+G R L+L A S G D + G
Sbjct: 411 SSKINRRVDIIVVPPAYIGSAVLGWSGGIFFLRDLKLYANSHLGLSYDSFEIINLKTGKD 470
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ EK++F + ++EP RN
Sbjct: 471 ICPDEFNEWKDPVEAEKDIFRYFSLEYIEPKFRN 504
>gi|225559373|gb|EEH07656.1| high-affinity nickel transporter [Ajellomyces capsulatus G186AR]
Length = 694
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 153/351 (43%), Gaps = 52/351 (14%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y AI I P+K++S +V LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEVSALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
+S F +WG+G TA+ Y H RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYHWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 339 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 387
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEDYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDERV 521
Query: 388 HKGFLSKYVKKLKEMKFLREDL---IFSTHSEEGT-----DSG---------------VD 424
+ V L++ ++ L + ++ E+ T D+G D
Sbjct: 522 THNLVYDVVASLEQGGWITHTLALHLTTSQREQQTAPYRADTGGKPRFDTLDKALVIWQD 581
Query: 425 TYFGLCTYPGREL---------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES- 474
+F G ++ R+D + P ++ WTG+ R LR A+
Sbjct: 582 PHFDAGKGEGGDVDNDNRNPNPHRRVDIIIAPWRTVGCAIVGWTGDTTFERDLRRYAKKM 641
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ + G G + S + EK V + +G W P ER
Sbjct: 642 HNWKFDSSGVRSRSTG-GQVIDLEGGGSTWQEREKLVLEGMGVGWRPPEER 691
>gi|409080765|gb|EKM81125.1| hypothetical protein AGABI1DRAFT_36756 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 578
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 145/348 (41%), Gaps = 78/348 (22%)
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 304
+ LPG+G ++ I+E + G + + E + E+ R++SLF V+GIGP+ A+ LYE G
Sbjct: 240 ISKLPGVGSKVRSKIEEFIKNGTIEETETTLESERYRSLSLFNTVYGIGPSAARHLYELG 299
Query: 305 HRTLDDLK---------NEDSLTH----------------------------SQRLGLKY 327
R++ DL+ N L S ++ L
Sbjct: 300 LRSVGDLERYYDVPQGVNASQLDEIESQTFTPNGRPVPLKSFTEGNAKIPPISVKVALAL 359
Query: 328 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 387
+D+ T IPR E+E++ R++ E+V G +RRGK D+D+VI H D
Sbjct: 360 REDLNTPIPRAELEEIHRVIMSELEQVQAGCSSTVVGGHRRGKLESNDMDIVITHSDMHQ 419
Query: 388 HKGFLSKYVKKLKEMKFLREDLI--------FSTHSEEGTDSGVDTYFGLCTY------- 432
G + KL E + R +LI F +H+ T+ L +
Sbjct: 420 GTGSIKGMAAKLVERLYKRGELIHAKAYLSGFHSHNPLRTEHWDSLEKALTVFRLPASST 479
Query: 433 -----------PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYRLD 480
R L R+D P + Y ++ W+G+ + R LRL A+ KG + D
Sbjct: 480 ASQSQSSEAGSQTRRLYRRLDLIFAPPEAYWTAVVGWSGSRLFERDLRLWAKVEKGMKFD 539
Query: 481 DTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHERN 526
+GL R S F + E++VF LG W++P RN
Sbjct: 540 SSGL------------TRRHDSKLFVPENEEDVFKILGLEWVDPTLRN 575
>gi|226293847|gb|EEH49267.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb18]
Length = 687
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 152/350 (43%), Gaps = 50/350 (14%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 281
+Y AI I P+ ++SA +V LPG + E + G L + D +
Sbjct: 337 AYSTAIASIAAYPYPLKSATEVSSLPGCEVKIATLFSEFNQSSDGTLESANQLDTDPVLS 396
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
++ F +WG+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR
Sbjct: 397 VLNKFSNIWGVGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRS 456
Query: 339 EVEQMERLLQKAGEEVLPEVI----------ILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
EVE + + + + V PE I+ GG YRRGK CGD+D+++ H + +
Sbjct: 457 EVESIADTVLRHAKLVRPESQEDYKGAAIEGIIVGG-YRRGKERCGDVDLILTHRNERVT 515
Query: 389 KGFLSKYVKKLKEMKFLREDL---IFSTHSEE------GTDSGV------DTYFGLCTYP 433
+ V L++ ++ L + ++H E+ G SG+ D + P
Sbjct: 516 HNLVYDVVVSLEQEGWITHTLALHLTNSHREQQTLPFRGDTSGMPRFDTLDKALVVWQDP 575
Query: 434 GRE-----------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-K 475
E R+D + P ++ WTG R LR A+
Sbjct: 576 HFEKDGSGDVDEAPSNRNPNPHRRVDIIISPWRTIGCAIVGWTGGTTFERDLRRYAKKVH 635
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ + G G + + + E+ V + +G W P ER
Sbjct: 636 NWKFDSSGVRSRSKG-GQVIDLEGKGKTWQERERFVLEGMGVGWRPPEER 684
>gi|295321899|pdb|3LQC|B Chain B, X-Ray Crystal Structure Of Oxidized Xrcc1 Bound To Dna Pol
B Thumb Domain
Length = 200
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 115/209 (55%), Gaps = 25/209 (11%)
Query: 327 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 386
YF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 1 YFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFT 60
Query: 387 SHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELR 438
S L + V++L++++F+ + L G + G+C P E
Sbjct: 61 SESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYP 110
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H RID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV
Sbjct: 111 HRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV 165
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A L D+E+++FD++ + + EP +R+
Sbjct: 166 -AGEPLPVDSEQDIFDYIQWRYREPKDRS 193
>gi|321459302|gb|EFX70357.1| hypothetical protein DAPPUDRAFT_300508 [Daphnia pulex]
Length = 538
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 155/348 (44%), Gaps = 66/348 (18%)
Query: 232 IEKLPFKIESADQVKGLPGIGKSMQDHIQ-EIVTTGKLSKLEHFEKDEKVRTISLFGEVW 290
I+ LPFK ++ Q+KG+ G+G + +I+ +G ++E D+K ++ +F +V+
Sbjct: 205 IKCLPFKATNSQQLKGIKGLGNGHALRVATQILESGYCPEVEEKRNDKKFLSLQIFCKVY 264
Query: 291 GIGPATAQKLYEKGHRTLDDLK--------NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 342
G+GP+ A+K Y +G RT++D+K N D + H G+ ++DD+ + R E E
Sbjct: 265 GVGPSIAEKWYAQGLRTVEDVKKLDQQDIANNDMIAH----GVAFYDDLNRPLLRAEAEN 320
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS-HKGFLSKYVKKLKE 401
+ + + +LP V+ G + RGK+S DLDV+ +P+R+ G ++ + +L +
Sbjct: 321 TYKYITDLAKLILPSVVTSMNGGFLRGKSSGHDLDVLFSYPEREDGDYGLIAAVLDELNK 380
Query: 402 MKFLRE-------------DLIFSTHSEEGTDSGVDTYFGLCTYP--------------- 433
+ ++ S S T + T + YP
Sbjct: 381 KGLVVWSRATHTDGPRKVIEINSSPLSSGSTKEHLPTMMIIFKYPLDDRFDEFERRDFSG 440
Query: 434 ------------GRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRL 479
R+ R R+D Y + I WTG+ NR LR A +S Y L
Sbjct: 441 ERNLGPFQLANSNRQWRAVRVDLVGSTNAQYPYAQIGWTGSKQYNRSLRQYAKDSLNYSL 500
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
GL + +G + + A+ TE++VF L + EP ERN
Sbjct: 501 SSMGL----HDNGQNRWIAAQ------TEQDVFHHLKLTYREPWERNF 538
>gi|58261266|ref|XP_568043.1| beta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57230125|gb|AAW46526.1| beta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 556
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 152/337 (45%), Gaps = 46/337 (13%)
Query: 223 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALSLQGVGEKVATRIDEFLQTGEIAESQEILASSRFNA 289
Query: 283 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHS--------------QRLGLKY 327
+ F V+ IG A++LYE+ H RTLDD+K + R G+K
Sbjct: 290 LQNFASVYTIGHFRAKELYERHHCRTLDDVKRHFADMEKDGEAKQGRGKDKRRMRGGMKE 349
Query: 328 FDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 379
+ ++ + + EVE++ + E +P +CGG YRRGKA D+D+V
Sbjct: 350 HEIVEEWMKLKNELDQKKEVEEIAACVLDNLEAFIPGCEYTICGG-YRRGKAQSSDVDIV 408
Query: 380 IMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD--------SGVDTYFGLCT 431
P G L +L E+ + ++ TH + +D F +
Sbjct: 409 FRPPKDDQDIGLLRALYLRLSELGIVTH-VLQVTHRDSNQPIRAAAQNFDNLDKAFVIFK 467
Query: 432 YPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATY 489
PG L R+D PRD YA +++WTG+ + R L+ AE+ KG++ GL
Sbjct: 468 LPGEGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENEKGHKF-RAGLIKIAT 526
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G + +TE+E+FD+LG ++ P RN
Sbjct: 527 GE----------EINLETEREIFDYLGLRYIPPELRN 553
>gi|358369850|dbj|GAA86463.1| terminal deoxynucleotidyl transferase [Aspergillus kawachii IFO
4308]
Length = 676
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 120/514 (23%), Positives = 204/514 (39%), Gaps = 73/514 (14%)
Query: 73 SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKI 132
SV++ WL+ L+ E +S D Y I IA R ++ + S + R +
Sbjct: 172 SVVKLDWLDQCLKAQELLSTDPYTIY-------IARRAPRPVEPSKPASLGSDILQRARQ 224
Query: 133 KSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLL 192
++ ++ P ++ S + +PD+ H+ L
Sbjct: 225 DAALRPPPKPPTVYHHARTHDSTHNPPKLYRTTTSENEETESLPPAPDWVKEHVLYACLR 284
Query: 193 YNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP 249
P L+ +LI I R L D +Y +I I P + ++ LP
Sbjct: 285 STP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAAYPHEFRRPSEILTLP 342
Query: 250 GIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 307
G + + E TG LS + D ++ ++ F +WG+G TA++ Y H T
Sbjct: 343 GCDTKIANLFYEYQQSPTGTLSAATLLDTDPTLQILNNFYNIWGVGAKTAREFYYYRHWT 402
Query: 308 -LDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP-------- 356
LDD+ ++LT Q++GLKY+D+ T IPR EVEQ+ + + V P
Sbjct: 403 DLDDIIEHGWNNLTRVQQIGLKYYDEFLTGIPRPEVEQIATTVTQHANLVRPTSFDNEEK 462
Query: 357 --EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL--------- 405
+ II+ G YRRGK CGD+D+++ HPD K + V L+ ++
Sbjct: 463 GIQCIIV--GGYRRGKPLCGDVDLILTHPDESLTKNLVVDVVASLESSGWITHTLALHLM 520
Query: 406 -----REDLIFSTHSEEGTDSGVDT-----------YFGLCT------------YPGREL 437
++ L + + + T DT +F T + +
Sbjct: 521 TSNRDQQTLPYRASNADSTGKNFDTLDKALVVWQDPHFDDTTNQPETETTSEEEHYAKSK 580
Query: 438 RH-----RIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGS 491
R+ R+D + P ++ W+G+ R L R + ++ G++ D +G+ T G
Sbjct: 581 RNPNPHRRVDIIISPWRTVGCAVLGWSGDKTFERDLRRYVKKAHGWKFDSSGVRERTSG- 639
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G + A + E+ V + LG W P ER
Sbjct: 640 GQVIDLEADGETWEERERLVMEGLGVGWRRPEER 673
>gi|350636864|gb|EHA25222.1| hypothetical protein ASPNIDRAFT_42418 [Aspergillus niger ATCC 1015]
Length = 676
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 164/407 (40%), Gaps = 62/407 (15%)
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 234
+PD+ H+ L P L+ +LI I R L D +Y +I I
Sbjct: 270 APDWVKEHVLYACLRSAP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAA 327
Query: 235 LPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGI 292
P + +V LPG + + E TG LS + D +R ++ F +WG+
Sbjct: 328 YPHEFRRPSEVLTLPGCDTKIANLFYEYQESPTGTLSAASLLDTDPTLRILNTFYNIWGV 387
Query: 293 GPATAQKLYEKGHRT-LDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
G TA++LY H T LDD+ SLT Q++G+KY+D+ IPR EVEQ+ + +
Sbjct: 388 GAKTARELYYYRHWTDLDDIIEHGWSSLTRVQQIGVKYYDEFLIGIPRPEVEQIATTVTQ 447
Query: 350 AGEEVLP------EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
V P E I C G YRRGK CGD+D+++ HPD K + V L+
Sbjct: 448 HANLVRPTSFDNEEKGIQCIIVGGYRRGKPLCGDVDLILTHPDESLTKNLVLDVVASLES 507
Query: 402 MKFL--------------REDLIFSTHSEEGTDSGVDT-----------YFGLCTYPGRE 436
++ ++ L + + + T DT +F P +
Sbjct: 508 SGWITHTLALHLMTSNRDQQTLPYRASNADSTGKNFDTLDKALVVWQDPHFDDADTPQNQ 567
Query: 437 -----------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKGYR 478
R+D + P ++ W+G+ R L R + ++ G++
Sbjct: 568 SETPEEEHYTRSKRNPNPHRRVDIIISPWRTVGCAVLGWSGDKTFERDLRRYVKKAHGWK 627
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
D +G+ T G G + + E+ V + LG W P ER
Sbjct: 628 FDSSGVRERTSG-GQVVDLEGDGETWEERERLVMEGLGVGWRRPEER 673
>gi|134115703|ref|XP_773565.1| hypothetical protein CNBI1790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256191|gb|EAL18918.1| hypothetical protein CNBI1790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 556
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 152/337 (45%), Gaps = 46/337 (13%)
Query: 223 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALSLQGVGEKVATRIDEFLQTGEIAESQEILASSRFNA 289
Query: 283 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHS--------------QRLGLKY 327
+ F V+ IG A++LYE+ H RTLDD+K + R G+K
Sbjct: 290 LQNFASVYTIGHFRAKELYERHHCRTLDDVKRHFADMEKDGEAKQGRGKDKRRMRGGMKE 349
Query: 328 FDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 379
+ ++ + + EVE++ + E +P +CGG YRRGKA D+D+V
Sbjct: 350 HEIVEEWMKLKNELDQKKEVEEIAACVLDNLEAFIPGCEYTICGG-YRRGKAQSSDVDIV 408
Query: 380 IMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD--------SGVDTYFGLCT 431
P G L +L E+ + ++ TH + +D F +
Sbjct: 409 FRPPKDDQDIGLLRALYLRLSELGIVTH-VLQVTHRDSNQPIRAAAQNFDNLDKAFVIFK 467
Query: 432 YPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATY 489
PG L R+D PRD YA +++WTG+ + R L+ AE+ KG++ GL
Sbjct: 468 LPGEGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENEKGHKF-RAGLIKIAT 526
Query: 490 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G + +TE+E+FD+LG ++ P RN
Sbjct: 527 GE----------EINLETEREIFDYLGLRYIPPELRN 553
>gi|432901792|ref|XP_004076949.1| PREDICTED: DNA nucleotidylexotransferase-like, partial [Oryzias
latipes]
Length = 355
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 110/204 (53%), Gaps = 2/204 (0%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
NK +T+ F L Y + + ++ +A V++ L +++ S+ QV LP +G++M++
Sbjct: 150 NKTLTDAFEVLAENYEFNEMEGQCLAFRRAASVLKSLSWQVRSSHQVHDLPCLGETMEEL 209
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 316
++EI+ G+ ++ DE+ +T+ F V+G+G TA+K Y +G RT D+ E S
Sbjct: 210 VEEILQYGRSFEVAKILSDERFQTLKGFTSVFGVGLKTAEKWYRRGLRTFPDVMAEPSIR 269
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
L Q+ G ++ DI + + E + ++ +A + P I+ G +RRGK D+
Sbjct: 270 LNRMQQSGFLHYGDISRHVSKAEALALGNIIDEAVHAIAPNGILTLTGGFRRGKEFGHDV 329
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLK 400
D ++ P+R +G L+ +K LK
Sbjct: 330 DFIVTTPERGQEEGLLTNIIKHLK 353
>gi|431838953|gb|ELK00882.1| DNA nucleotidylexotransferase [Pteropus alecto]
Length = 464
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 28/297 (9%)
Query: 201 NITEIFGKLINIYRALGEDRRSFSYY----KAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
N +F + E R + +Y +A V++ LPF I S +G+P +G +
Sbjct: 144 NCNHVFTDAFEVLAENCEFRENEVFYLVFMRAASVLKSLPFTITSMKDTEGIPCLGDKAK 203
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G R+L ++++ +
Sbjct: 204 YIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRSLSKIRSDKT 263
Query: 317 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
L T Q+ G Y+DD+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 264 LKFTQMQKAGFLYYDDLVSCVTRAEAEAVSVLVKEAVSAFLPDASVTVTGGFRRGKKIGH 323
Query: 375 DLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
D+D +I P + + L K V L E K + D ++ +EG T+ +
Sbjct: 324 DVDFLISSPGSTEEDEQQLLPK-VMNLWERKRVESD---NSSQQEG-----KTWKAI--- 371
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 488
R+D V P + +AF L+ WTG+ R LR A + LD+ L+ T
Sbjct: 372 -------RVDLVVCPYECHAFALLGWTGSRQFERDLRRYATHERKMILDNHALYDKT 421
>gi|325088443|gb|EGC41753.1| high-affinity nickel transporter [Ajellomyces capsulatus H88]
Length = 694
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 153/351 (43%), Gaps = 52/351 (14%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y AI I P+K++S ++ LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEISALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
+S F +WG+G TA+ Y + RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYYWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 339 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 387
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEGYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDERV 521
Query: 388 HKGFLSKYVKKLKEMKFLREDL---IFSTHSEEGT-----DSG---------------VD 424
+ V L++ ++ L + ++ E+ T D+G D
Sbjct: 522 THNLVYDVVASLEQGGWITHTLALHLTTSQREQQTAPYRADTGGKPRFDTLDKALVIWQD 581
Query: 425 TYFGLCTYPGREL---------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES- 474
+F G ++ R+D + P ++ WTG+ R LR A+
Sbjct: 582 PHFDAGKGEGGDVGNDNRNPNPHRRVDIIIAPWRTVGCAIVGWTGDTTFERDLRRYAKKM 641
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ + G G + S + EK V + +G W P ER
Sbjct: 642 HNWKFDSSGVRSRSTG-GQVIDLEGGGSTWQEREKLVLEGMGVGWRPPEER 691
>gi|240282304|gb|EER45807.1| high-affinity nickel transporter [Ajellomyces capsulatus H143]
Length = 694
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 153/351 (43%), Gaps = 52/351 (14%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y AI I P+K++S ++ LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEISALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
+S F +WG+G TA+ Y + RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYYWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 339 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 387
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEDYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDERV 521
Query: 388 HKGFLSKYVKKLKEMKFLREDL---IFSTHSEEGT-----DSG---------------VD 424
+ V L++ ++ L + ++ E+ T D+G D
Sbjct: 522 THNLVYDVVASLEQGGWITHTLALHLTTSQREQQTAPYRADTGGKPRFDTLDKALVIWQD 581
Query: 425 TYFGLCTYPGREL---------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES- 474
+F G ++ R+D + P ++ WTG+ R LR A+
Sbjct: 582 PHFDAGKGEGGDVGNDNRNPNPHRRVDIIIAPWRTVGCAIVGWTGDTTFERDLRRYAKKM 641
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ + G G + S + EK V + +G W P ER
Sbjct: 642 HNWKFDSSGVRSRSTG-GQVIDLEGGGSTWQEREKLVLEGMGVGWRPPEER 691
>gi|345330196|ref|XP_001505901.2| PREDICTED: DNA nucleotidylexotransferase-like [Ornithorhynchus
anatinus]
Length = 513
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/562 (23%), Positives = 234/562 (41%), Gaps = 117/562 (20%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD------LEALLQQ 72
F +F++EK + R + + G VE +LS+ VTH++A + LE L Q
Sbjct: 14 FNEFVLFILEKKMGTTRRAFLMELARRKGFRVESELSESVTHIVAENNSCSDVLEWLAVQ 73
Query: 73 SV--------IRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 124
+V + WL + +++G+ V E + + +L EN+ SQ QG+
Sbjct: 74 NVGDSSRFELLDISWLTECMKVGKPV-EAIGKHQLI--NENVLKLQRSQFQGD------- 123
Query: 125 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSH 184
SSH P +P + A+ S +
Sbjct: 124 -SSH---------------------------PPPPETP------------SLATKQVSQY 143
Query: 185 HITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQ 244
+ L N N+ T+ F L + + ++ +AI V++ LPF I
Sbjct: 144 ACERRTTLNN---CNQKFTDAFEILAKDFEFRENEGICLAFMRAISVLKCLPFTIVRMKD 200
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA-TAQKLYEK 303
++G+P +G ++ I+EI+ G+ S ++ DE+ R+ LF V+ +G + +
Sbjct: 201 IEGVPWLGDQVKSIIEEIIEDGESSSVKAVLNDERYRSFQLFNSVFEVGLTDNGENGIAR 260
Query: 304 GHRTLDDLKNEDSLTHSQRL----------GLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
G +TL+++ + +++ ++ G Y++D+ + + + E + + ++++A
Sbjct: 261 GFQTLNEVITDKNISLTKTTLSTSLWNYLPGFLYYEDLVSCVAKEEADAVYLIVKEAVRA 320
Query: 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL-KEMKFLREDLIFS 412
LPE ++ G +RRGK D+D +I P+ + L +K K+ L DL+ S
Sbjct: 321 FLPEALVTLTGGFRRGKKIGHDVDFLISDPESGQDEQLLPNIIKLWEKQELLLYYDLVES 380
Query: 413 THSEEGTDS-GVDT--YFGLCTY----------------PGRELRH--------RIDFKV 445
T + S VD +F C P H R+D +
Sbjct: 381 TFEKTKIPSRKVDAMDHFQKCFLILKLHHQKVDSGRYKPPPESKNHEAKNWKAIRVDLVM 440
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 504
P + YA+ L+ WTG+ R LR A K LD+ L+ T + LK
Sbjct: 441 CPFEQYAYALLGWTGSRQFERDLRRYATHEKKMMLDNHALYDKT----------KKIFLK 490
Query: 505 FDTEKEVFDFLGFPWLEPHERN 526
++E+++F LG ++EP ERN
Sbjct: 491 AESEEDIFTHLGLDYIEPWERN 512
>gi|320170152|gb|EFW47051.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 794
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 6/213 (2%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
+LN ++ L Y+ G+D R ++ +A+ + PF+I S D+ LP I +
Sbjct: 297 ELNASVAAPLSALAEFYKTSGDDIRYLAFRRAVASLRACPFRIRSVDEALRLPFISGKIA 356
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I E + G + + + RT+ LF + G+G A YE G+RTL DL +
Sbjct: 357 LLIGEQLRHGHVKRHLELCNGKLGRTLQLFTRILGVGSKLALMWYESGYRTLQDLSSRPP 416
Query: 317 ----LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
HS LGL+ ++DI +IPR EVE+ L ++ V P +++ G +RRGK++
Sbjct: 417 RGWRALHS--LGLELYNDITQQIPRAEVEEFGELFRQHAARVDPNLVMTFSGGFRRGKST 474
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 405
D+D++I H L V+ L+E +
Sbjct: 475 VSDVDILITHETEGLQNNKLFAIVQSLEEAGII 507
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
PGR R R+D P + F L+ WTG D+ R +R A KGY L + GL T
Sbjct: 711 PGRPHR-RVDIISCPLHDFPFTLLGWTGTDIFERSIREWATRKGYHLSNHGLEHRT---- 765
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
A TEK+VFD LG + P ERN
Sbjct: 766 ------ANVFTPCATEKDVFDALGLEYRHPTERNC 794
>gi|261190052|ref|XP_002621436.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
SLH14081]
gi|239591264|gb|EEQ73845.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
SLH14081]
Length = 698
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 125/533 (23%), Positives = 210/533 (39%), Gaps = 95/533 (17%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 177 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 233
Query: 134 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 167
+K D A S APN SP ++ S
Sbjct: 234 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 290
Query: 168 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 222
T +P + + S NPP+ +LI I R L D
Sbjct: 291 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 345
Query: 223 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 279
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 346 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLESANQLDTDPV 405
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIP 336
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 406 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 465
Query: 337 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 385
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 466 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 523
Query: 386 KSHKGFLSKYVKKLKEMKFLREDL---IFSTHSEEGT-----DSG-------VDTYFGLC 430
+ + V L++ ++ L + ++H E+ T D+G +D +
Sbjct: 524 RVTHNLVYDVVASLEKEGWITHTLALHLTTSHREQQTAPYRGDTGGKPRFDSLDKALVVW 583
Query: 431 TYPGRELR-----------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
P E R R+D + P ++ WTG R LR A+
Sbjct: 584 QNPHFEARKGEDGNVENEKRNPNPHRRVDIIISPWRTVGCAIVGWTGETTFERDLRRYAK 643
Query: 474 S-KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ + G G + + S + EK V + +G W P ER
Sbjct: 644 KVHNWKFDSSGVRSRSTG-GQVIDLEGKGSTWQEREKLVLEGIGVGWRPPEER 695
>gi|327353100|gb|EGE81957.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
ATCC 18188]
Length = 723
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 125/533 (23%), Positives = 210/533 (39%), Gaps = 95/533 (17%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 202 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 258
Query: 134 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 167
+K D A S APN SP ++ S
Sbjct: 259 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 315
Query: 168 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 222
T +P + + S NPP+ +LI I R L D
Sbjct: 316 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 370
Query: 223 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 279
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 371 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLESANQLDTDPV 430
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 336
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 431 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 490
Query: 337 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 385
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 491 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 548
Query: 386 KSHKGFLSKYVKKLKEMKFLREDL---IFSTHSEEGT-----DSG-------VDTYFGLC 430
+ + V L++ ++ L + ++H E+ T D+G +D +
Sbjct: 549 RVTHNLVYDVVASLEKEGWITHTLALHLTTSHREQQTAPYRGDTGGKPRFDSLDKALVVW 608
Query: 431 TYPGRELR-----------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
P E R R+D + P ++ WTG R LR A+
Sbjct: 609 QNPHFEARKGEDGNVENEKRNPNPHRRVDIIISPWRTVGCAIVGWTGETTFERDLRRYAK 668
Query: 474 S-KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ + G G + + S + EK V + +G W P ER
Sbjct: 669 KVHNWKFDSSGVRSRSTG-GQVIDLEGKGSTWQEREKLVLEGIGVGWRPPEER 720
>gi|239606327|gb|EEQ83314.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
ER-3]
Length = 723
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 125/533 (23%), Positives = 210/533 (39%), Gaps = 95/533 (17%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 202 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 258
Query: 134 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 167
+K D A S APN SP ++ S
Sbjct: 259 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 315
Query: 168 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 222
T +P + + S NPP+ +LI I R L D
Sbjct: 316 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 370
Query: 223 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 279
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 371 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLEAANQLDTDPV 430
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 336
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 431 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 490
Query: 337 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 385
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 491 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 548
Query: 386 KSHKGFLSKYVKKLKEMKFLREDL---IFSTHSEEGT-----DSG-------VDTYFGLC 430
+ + V L++ ++ L + ++H E+ T D+G +D +
Sbjct: 549 RVTHNLVYDVVASLEKEGWITHTLALHLTTSHREQQTAPYRGDTGGKPRFDSLDKALVVW 608
Query: 431 TYPGRELR-----------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
P E R R+D + P ++ WTG R LR A+
Sbjct: 609 QNPHFEARKGEDGNVENEKRNPNPHRRVDIIISPWRTVGCAIVGWTGETTFERDLRRYAK 668
Query: 474 S-KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ + G G + + S + EK V + +G W P ER
Sbjct: 669 KVHNWKFDSSGVRSRSTG-GQVIDLEGKGSTWQEREKLVLEGIGVGWRPPEER 720
>gi|115443076|ref|XP_001218345.1| high-affinity nickel transport protein [Aspergillus terreus NIH2624]
gi|114188214|gb|EAU29914.1| high-affinity nickel transport protein [Aspergillus terreus NIH2624]
Length = 1044
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 152/357 (42%), Gaps = 58/357 (16%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT--TGKLSKLEHFEKDEKVR 281
+Y +I I P++ +V LPG + + E T L+ + D ++R
Sbjct: 688 AYSTSIAAIAAYPYEFRRPSEVLTLPGCDAKIAHLLAEYQASETRTLAAAKALTTDPELR 747
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRH 338
+ F ++WG+GP TA++ Y +G R LDD+ L+ Q++G+KY+D+ + IPR
Sbjct: 748 VLHEFSQIWGVGPKTAREFYYARGWRDLDDIVEHGWAGLSRVQQIGVKYYDEFRRGIPRG 807
Query: 339 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKG 390
EVE + R++ + V PE IL GG YRRGK GD+D+++ H D +
Sbjct: 808 EVEAIARVVHRHANAVRPEAAYDGRGVECILVGG-YRRGKEISGDVDLILTHRDETVTRN 866
Query: 391 FLSKYVKKLKEMKFLREDLIFSTHSE---------EGTDSG------VDTYFGLCTYP-- 433
+ V L+ ++ L + + G +G +D + P
Sbjct: 867 LVVDVVGSLEAEGWVTHTLALNLTTSARDQQPLPFRGESTGAHHFDSLDKALVVWQDPRF 926
Query: 434 ------------------GRELRH-----RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
R R+ R+D + P ++ W+G+ R LR
Sbjct: 927 DDPQVEEGKGKGKAEEEAARRKRNPNPHRRVDIIISPWRTVGCAVLGWSGDTTFERDLRR 986
Query: 471 LAES-KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT-EKEVFDFLGFPWLEPHER 525
A+ G++ D +G+ T +GG+ L ++ E+ V + LG W EP ER
Sbjct: 987 YAKKMHGWKFDSSGVRERT--TGGRVVDLESEGLTWEERERLVMEGLGVGWREPGER 1041
>gi|225684227|gb|EEH22511.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb03]
Length = 679
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 137/309 (44%), Gaps = 49/309 (15%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 281
+Y AI I P+ ++SA +V LPG + E + G L + D +
Sbjct: 337 AYSTAIASIAAYPYPLKSATEVSSLPGCEVKIATLFSEFNQSSDGTLESANQLDADPVLS 396
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
++ F +WG+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR
Sbjct: 397 VLNKFSNIWGVGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRS 456
Query: 339 EVEQMERLLQKAGEEVLPEVI----------ILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
EVE + + + + V PE I+ GG YRRGK CGD+D+++ H + +
Sbjct: 457 EVESIADTVLRHAKLVRPESQEDYKGAAIEGIIVGG-YRRGKERCGDVDLILTHRNERVT 515
Query: 389 KGFLSKYVKKLKEMKFLREDL---IFSTHSEEGT-----DSG-------VDTYFGLCTYP 433
+ V L++ ++ L + ++H E+ T D+G +D + P
Sbjct: 516 HNLVYDVVVSLEQEGWITHTLALHLTNSHREQQTLPFRGDTGGMPRFDTLDKALVVWQDP 575
Query: 434 GRE-----------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-K 475
E R+D + P ++ WTG R LR A+
Sbjct: 576 HFEKDGSGDVDEAPSNRNPNPHRRVDIIISPWRTIGCAIVGWTGGTTFERDLRRYAKKVH 635
Query: 476 GYRLDDTGL 484
++ D +G+
Sbjct: 636 NWKFDSSGV 644
>gi|390343812|ref|XP_785226.2| PREDICTED: DNA polymerase lambda-like [Strongylocentrotus
purpuratus]
Length = 464
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 83/147 (56%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N++ITE L+ Y + R+ Y KAI ++ + + ++ +PGIG M D
Sbjct: 263 NQHITEKLEVLMKAYENTQDRWRALGYKKAISALKNYGKDVTTWEEASAIPGIGTKMADK 322
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I EI+ +G L K++H K E + I LF VWG GP A++ ++G RTL+DL+ + L+
Sbjct: 323 ILEIIESGHLRKIDHVCKGEDMEAIDLFNNVWGAGPTVAREWVQQGFRTLEDLREKAKLS 382
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMER 345
Q +GLK++ + R+PR E +ER
Sbjct: 383 KQQLIGLKHYHEFLERMPRQEAGDIER 409
>gi|401888944|gb|EJT52888.1| beta DNA polymerase [Trichosporon asahii var. asahii CBS 2479]
gi|406697654|gb|EKD00910.1| beta DNA polymerase [Trichosporon asahii var. asahii CBS 8904]
Length = 605
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 152/346 (43%), Gaps = 58/346 (16%)
Query: 223 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
SY +++ +++ +P +I S ++ + L +G + + I E + TG++S+ E+ +
Sbjct: 273 LSYRRSMAILKSVPRRIRSGEEAQTLVDVGGKVANRIDEYLATGQISESASILASERYKA 332
Query: 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDL---------------------KNEDSLTHSQ 321
+ LF V+ IG TA +L++ G RTLDD+ + E ++T +
Sbjct: 333 LRLFSSVFTIGTHTAVQLWDAGCRTLDDVLQHYDWTPPSTPKEERKARKRRMEGTMTKPE 392
Query: 322 --RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 379
+K D + P+ +V + L+++ + + P+ + G +RRGK GD+DV+
Sbjct: 393 IVHAWVKLRDQLDQ--PK-DVAAISSLVREHLQALRPDTQQVIAGGFRRGKQDTGDVDVI 449
Query: 380 IMH------------PDRKSHKGFLSKYVKKLKEMKFLREDLIFST-------HSEEGTD 420
PD G L + V++L + + L + HS
Sbjct: 450 FTAGPYPSHATSPQTPDSDPTDGLLFRLVRRLCRLGIITHVLQLTQRARVGPLHSSGANF 509
Query: 421 SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 480
+D F + G+ R+D PR YA +++W+G+ + R LR E +G +
Sbjct: 510 DNLDKAFVILKIGGQH--RRVDLIASPRTRYAAAVLSWSGSMMFERDLRRYVEDRGLKFR 567
Query: 481 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ P T + + F TE+E+F FL P++ P RN
Sbjct: 568 AGLMDPHT-----------QKEINFATERELFAFLELPYVPPQLRN 602
>gi|145246538|ref|XP_001395518.1| terminal deoxynucleotidyl transferase [Aspergillus niger CBS
513.88]
gi|134080236|emb|CAK97139.1| unnamed protein product [Aspergillus niger]
Length = 676
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 164/409 (40%), Gaps = 66/409 (16%)
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 234
+PD+ H+ L P L+ +LI I R L D +Y +I I
Sbjct: 270 APDWVKEHVLYACLRSAP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAA 327
Query: 235 LPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGI 292
P + +V LPG + + E TG LS + D +R ++ F +WG+
Sbjct: 328 YPHEFRRPSEVLTLPGCDTKIANLFYEYQESPTGTLSAASLLDTDPTLRILNTFYNIWGV 387
Query: 293 GPATAQKLYEKGHRT-LDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
G TA++LY H T LDD+ SLT Q++G+KY+D+ IPR EVEQ+ + +
Sbjct: 388 GAKTARELYYYRHWTDLDDIIEHGWSSLTRVQQIGVKYYDEFLIGIPRPEVEQIATTVTQ 447
Query: 350 AGEEVLP----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
V P + II+ G YRRGK CGD+D+++ HP K + V L
Sbjct: 448 HANLVRPTSFDNEEKGIQCIIV--GGYRRGKPLCGDVDLILTHPVESLTKNLVLDVVASL 505
Query: 400 KEMKFL--------------REDLIFSTHSEEGTDSGVDT-----------YFGLCTYPG 434
+ ++ ++ L + + + T DT +F P
Sbjct: 506 ESSGWITHTLALHLMTSNRDQQTLPYRASNADSTGKNFDTLDKALVVWQDPHFDDADTPQ 565
Query: 435 RE-----------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKG 476
+ R+D + P ++ W+G+ R L R + ++ G
Sbjct: 566 NQSETPEEEHYTRSKRNPNPHRRVDIIISPWRTVGCAVLGWSGDKTFERDLRRYVKKAHG 625
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D +G+ T G G + + E+ V + LG W P ER
Sbjct: 626 WKFDSSGVRERTSG-GQVVDLEGDGETWEERERLVMEGLGVGWRRPEER 673
>gi|302404606|ref|XP_003000140.1| DNA polymerase mu [Verticillium albo-atrum VaMs.102]
gi|261360797|gb|EEY23225.1| DNA polymerase mu [Verticillium albo-atrum VaMs.102]
Length = 262
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 30/259 (11%)
Query: 296 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353
TA++ Y+KG R LDDL D L+ Q++G+KY+D+ IPR EVE + + + +E
Sbjct: 2 TAREFYKKGWRDLDDLVEYGWDRLSRVQQIGVKYYDEFLQPIPRLEVEAIAATILQQAQE 61
Query: 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
+ P + G +RRGK S GD+DV++ H D + F+ + V L++ + + L ST
Sbjct: 62 IEPGFQLTIVGGHRRGKKSSGDVDVILSHADEDATYRFIERLVASLEKARLITHTLTLST 121
Query: 414 HSEE------------------GTDSGVDTYFGLCTYPGRE------LRHRIDFKVYPRD 449
H+ E G D+ +D + PG E R+D + P
Sbjct: 122 HNSERDQKPLTWKADAARTKGAGFDT-LDKAMVVWQEPGSEDSPSGRPHRRVDIIISPWK 180
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGG--KQGVRARTSLKFD 506
++ W+G R +R + + GY+ D +G+ + GS ++G R
Sbjct: 181 TVGCAVLGWSGGTTFQRDVRRYCKKELGYKFDSSGIRKRSDGSWVDLERGSRGTAPDMLT 240
Query: 507 TEKEVFDFLGFPWLEPHER 525
E+ VF+ L W P +R
Sbjct: 241 AEQRVFEGLRLDWRPPEQR 259
>gi|321257082|ref|XP_003193463.1| beta DNA polymerase [Cryptococcus gattii WM276]
gi|317459933|gb|ADV21676.1| beta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 556
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 70/349 (20%)
Query: 223 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALRLQGVGEKVASRIDEFLQTGEIAESQEILASPRYNA 289
Query: 283 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRLGLKYFDD----------- 330
+ F V+ IG A++LYE+ H RTL+D+K +YF D
Sbjct: 290 LQTFASVYTIGHFRAKELYERHHCRTLEDVK-------------RYFADMEKDGEAEQGR 336
Query: 331 ----------------------IKTRI-PRHEVEQMERLLQKAGEEVLPEV-IILCGGSY 366
+K + + EVE++ + + E +P +CGG Y
Sbjct: 337 GKGRRRMRGGMKEYEIVEEWMKLKNELDQKEEVEEIAACVLENLEAFIPNCEYTICGG-Y 395
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD------ 420
RRGK D+D+V P G L +L E++ + ++ TH +
Sbjct: 396 RRGKTQSSDVDIVFRPPKDDQDIGLLRALYLRLSELRIVTH-VLHVTHRDPNQPIRAAAQ 454
Query: 421 --SGVDTYFGLCTYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
+D F + PG+ L R+D PRD YA +++WTG+ + R L+ AE++
Sbjct: 455 NFDNLDKAFVIFKLPGKGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENETG 514
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
GL G + +TE+E+FD+LG ++ P RN
Sbjct: 515 HKFRAGLIKIATGE----------EINLETEREIFDYLGLRYIPPELRN 553
>gi|307110952|gb|EFN59187.1| hypothetical protein CHLNCDRAFT_138091 [Chlorella variabilis]
Length = 587
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 11/161 (6%)
Query: 239 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
+ES + V +PG+G + ++EI+ G S++ DE+ + ++ EVWG G A+A
Sbjct: 295 LESEEDVDKVPGLGPKSKVKVKEILAKGTSSRIAAAAADEQRKVLTTLLEVWGTGTASAS 354
Query: 299 KLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL- 355
+ Y G RTLD+L++ +LT QR+GLKY+DD+K +IPR EV Q E+++++ E++
Sbjct: 355 RWYSLGVRTLDNLRSRTDLNLTEQQRVGLKYYDDLKQKIPRAEVAQTEKIVRETCFELIE 414
Query: 356 --------PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
GSY RGK D+D++I P SH
Sbjct: 415 RWGGTADVERTYCSATGSYLRGKPQSSDVDILICLPPSLSH 455
>gi|301615444|ref|XP_002937182.1| PREDICTED: hypothetical protein LOC100495475, partial [Xenopus
(Silurana) tropicalis]
Length = 913
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 148/356 (41%), Gaps = 61/356 (17%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
D N+ ++ F L + R ++ +A +I+ LPF I + +V+ LP +G M+
Sbjct: 592 DTNRCFSDAFDILAEYFEFSENKGRKVAFLRASSLIKSLPFPITAMKEVERLPWLGDQMK 651
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
I+EI+ GK K+ +E+ ++ + ++ G
Sbjct: 652 AIIEEILEEGKSYKVLELMSEERYKSFK------------RKIVFITGR----------- 688
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 376
Q LG Y++DI + + E E ++L++ + +P+ ++ G +RRGK + D+
Sbjct: 689 --MCQMLGFLYYEDITSSVSWAEAETTDQLIKSIVWKFVPDAVVTLTGGFRRGKKNGHDV 746
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLR-EDLIFSTHSEEGTDS-------------- 421
D++I P + K L + LK L D+I ST E S
Sbjct: 747 DIIITCPRKGKEKNILHNTISVLKNQGLLLFSDIIESTFVETKLPSKHVDALDHFQKAFL 806
Query: 422 ---------GVDTYFGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RL 470
+ C GR+ + R+D + P + Y + L+ WTG+ R L R
Sbjct: 807 ILKLLTQQTAIGDIIDPCGCEGRKWKAVRLDLVITPYEQYPYALLGWTGSRQFERDLRRY 866
Query: 471 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ LD+ GL+ + + LK E+E+F+ LG +LEP ERN
Sbjct: 867 TTHERKMMLDNHGLYDKS----------KKVFLKASNEEEIFEHLGLDYLEPWERN 912
>gi|170097213|ref|XP_001879826.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645229|gb|EDR09477.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 168
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 364 GSYRRGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
GSYRRGK CGD+DV++ D K+H G L + +K L+ + EDL E +D
Sbjct: 2 GSYRRGKMDCGDIDVLLTRSTKDGKTHAGILPRLLKALRGAGIIVEDLALP----EDSDG 57
Query: 422 GVDTYFGLCTYP---GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
TY GLC P G + R RIDF P L+ +TG+D+ NR +RL A + GY
Sbjct: 58 LEATYRGLCCLPDVKGSKYR-RIDFLTVPWQSRGAALLYYTGDDIFNRAMRLKANALGYS 116
Query: 479 LDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
L+ GLF + ++ + +TE+E+FD LG PW EP ER
Sbjct: 117 LNQRGLFGNVIRDPHDRRIKMNAGKLVASETEEEIFDILGVPWQEPLER 165
>gi|388858580|emb|CCF47930.1| related to DNA polymerase mu [Ustilago hordei]
Length = 648
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 161/393 (40%), Gaps = 66/393 (16%)
Query: 189 PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------ 242
PS L++P N+ + ++ R G+ +Y +AI ++ PF+I
Sbjct: 266 PSPLFSP---NQPLIAELEQIRTERRLTGDTYSEMAYMRAISALKAYPFRIPDPLLDPAG 322
Query: 243 -----------DQVKGLPGIGKSMQDHIQEI---------------VTTGKLSKLEHFEK 276
+V+ L G+GK + I++ V G++ + + ++
Sbjct: 323 IYDRQLLEMRLGEVEKLKGVGKKVFSLIKQFYSLPAGLGEEEKRNRVEEGRIIEAKVIKR 382
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTH-SQRLGLKYFDDIKT 333
D V ++ F E++GIGP A++ Y G R+ D+ + + TH S R ++ D++
Sbjct: 383 DRAVYVMNSFTELYGIGPIGAREAYNSGARSFADVLDRGKSLATHLSARESVRILSDLRK 442
Query: 334 RIPRHEVEQMERLLQKAGEEVLPEVII----LCGGSYRRGKASCGDLDVVIMHPDRKSH- 388
I R E + + VL + + +CGG YRRGK DLD++I H +S
Sbjct: 443 PIGREECRSITAHIMDLVRSVLGDGVQVKHEICGG-YRRGKTQTYDLDIIIGHAQPRSRA 501
Query: 389 -----------KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG--- 434
KG L+ V L DL ++E + L G
Sbjct: 502 LHLRLLNEMKGKGLLTHMVNISTPAATLDSDL-HPAGAKEAVHIDIANIVVLPPLSGTNP 560
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
+ R+D P +Y ++ WTG+ R LRL A+ KGY + GL G +
Sbjct: 561 NPVHRRVDLVFCPLKVYGATILGWTGSVTFERDLRLWAKQKGYSFNFDGL--THLGVAEE 618
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
G+ ++ E EVFD LG W+ P RN
Sbjct: 619 AGL-----VETQDESEVFDALGLQWMPPEWRNC 646
>gi|83775136|dbj|BAE65259.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 673
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 169/405 (41%), Gaps = 61/405 (15%)
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 234
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 235 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 292
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSENGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 293 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 350 AGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 402
V P+ V + G YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGGYRRGKEASGDVDLVLYHRDESVTKNLVVDIVGSLESE 507
Query: 403 KFLREDLIF---------STHSEEGTDSG-----VDTYFGLCTYPG-------------- 434
++ L T +G D+G +D + P
Sbjct: 508 GWITHTLALHMTTSNRDQQTLPYKGDDTGKHFDSLDKALVVWQDPNFDDDADPTPSSDAN 567
Query: 435 -----RELR-------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDD 481
R+ R R+D + P ++ W+G+ R LR A +S+G++ D
Sbjct: 568 AEEQSRQKRKRNPNPHRRVDIIISPWRTVGCAILGWSGDTTFERDLRRYAKKSRGWKFDS 627
Query: 482 TGLFPATYGSGGKQGVRARTSLKFDT-EKEVFDFLGFPWLEPHER 525
+G+ T +GG+ R ++ E+ V + LG W P ER
Sbjct: 628 SGVRERT--TGGQVIDLEREGRTWEERERLVMEGLGVGWRPPVER 670
>gi|390595703|gb|EIN05107.1| Nucleotidyltransferase, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 165
Score = 103 bits (256), Expect = 3e-19, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 368 RGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT 425
RGKA CGD+D++I P DR+ H+G L + ++ L+E K + EDL + E D
Sbjct: 1 RGKADCGDIDILITRPTYDRRDHRGILRRLLRALREAKIITEDLAVPNYDE--LDGLEGC 58
Query: 426 YFGLCTYPGRE--LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
Y GLC P E R RIDF P + L+ +TG+D+ NR +RL A G+ L+ G
Sbjct: 59 YRGLCRLPNVEGAKRRRIDFLTVPWECRGAALLYYTGDDIFNRSMRLKANKMGWSLNQRG 118
Query: 484 LFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHER 525
LF + V+ + TE+E+F+ LG PW EPHER
Sbjct: 119 LFANVVRDPRDRRVKMTQGKRIAGATEREIFEKLGVPWQEPHER 162
>gi|391869447|gb|EIT78645.1| DNA polymerase IV [Aspergillus oryzae 3.042]
Length = 673
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 100/405 (24%), Positives = 169/405 (41%), Gaps = 61/405 (15%)
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 234
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 235 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 292
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSEDGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 293 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 350 AGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 402
V P+ V + G YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGGYRRGKEASGDVDLVLSHRDESVTKNLVVDIVGSLESE 507
Query: 403 KFLREDLIF---------STHSEEGTDSG-------------VDTYFGLCTYP------- 433
++ L T +G D+G D F + P
Sbjct: 508 GWITHTLALHMTTSNRDQQTLPYKGDDTGKHFDSLDKALVVWQDPNFDDDSEPTPSSDVD 567
Query: 434 ----GRELR-------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDD 481
R+ R R+D + P ++ W+G+ R LR A +S+G++ D
Sbjct: 568 AEEQSRQKRKRNPNPHRRVDIIISPWRTVGCAILGWSGDTTFERDLRRYAKKSRGWKFDS 627
Query: 482 TGLFPATYGSGGKQGVRARTSLKFDT-EKEVFDFLGFPWLEPHER 525
+G+ T +GG+ R ++ E+ V + LG W P ER
Sbjct: 628 SGVRERT--TGGQVIDLEREGRTWEERERLVMEGLGVGWRPPVER 670
>gi|29825708|gb|AAO92254.1| terminal deoxynucleotidyl transferase isoform 2 [Ambystoma
mexicanum]
Length = 453
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 41/297 (13%)
Query: 261 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 320
+++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++L S
Sbjct: 166 DLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNENLKFS 225
Query: 321 --QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
Q GL++++DI + + E + + +++ A LP+ ++ G +RRG + D+D+
Sbjct: 226 KMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGHDVDM 285
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF-STHSEEGTDS---GVDTYFGLCTYPG 434
+I P + K L K + K+ L I ST E+ S + +F C
Sbjct: 286 LITSPIQGKEKELLHKVINLWKKQDLLLCHTIHESTMDEDNLPSKSVNLLDHFQKCFAIL 345
Query: 435 RELRH------------------------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
+ +H R+D P + YAF L+ WTG+ R LR
Sbjct: 346 KSNQHRGEISSCDGPHDSRERGKRIWKAIRVDLVFCPFEQYAFALLGWTGSRQFERDLRR 405
Query: 471 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A K +D+ L+ T R +K ++E+E+F LG +++P ERN
Sbjct: 406 YASHEKKMMIDNHALYDKT----------KRVFVKCESEEEIFGHLGLEYIDPVERN 452
>gi|238493687|ref|XP_002378080.1| terminal deoxynucleotidyl transferase, putative [Aspergillus flavus
NRRL3357]
gi|220696574|gb|EED52916.1| terminal deoxynucleotidyl transferase, putative [Aspergillus flavus
NRRL3357]
Length = 673
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 169/405 (41%), Gaps = 61/405 (15%)
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 234
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 235 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 292
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSEDGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 293 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 350 AGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 402
V P+ V + G YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGGYRRGKEASGDVDLVLSHRDESVTKNLVVDIVGSLESE 507
Query: 403 KFLREDLIF---------STHSEEGTDSG-----VDTYFGLCTYPG-------------- 434
++ L T +G D+G +D + P
Sbjct: 508 GWITHTLALHMTTSNRDQQTLPYKGDDTGKHFDSLDKALVVWQDPNFDDDADPTPSSDAN 567
Query: 435 -----RELR-------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDD 481
R+ R R+D + P ++ W+G+ R LR A +S+G++ D
Sbjct: 568 AEEQSRQKRKRNPNPHRRVDIIISPWRTVGCAILGWSGDTTFERDLRRYAKKSRGWKFDS 627
Query: 482 TGLFPATYGSGGKQGVRARTSLKFDT-EKEVFDFLGFPWLEPHER 525
+G+ T +GG+ R ++ E+ V + LG W P ER
Sbjct: 628 SGVRERT--TGGQVIDLEREGRTWEERERLVMEGLGVGWRPPVER 670
>gi|403278454|ref|XP_003930820.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Saimiri
boliviensis boliviensis]
Length = 457
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 114/524 (21%), Positives = 193/524 (36%), Gaps = 108/524 (20%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQSVIRY 77
F G+ ++LVE + R + G V + S +VTHV+ A
Sbjct: 26 CFPGVAIYLVEPHMGRSRRAFLTRLARSKGFRVLDSCSSEVTHVVMEQTSA--------- 76
Query: 78 QWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTE 137
E +S R+ P G + R L I + + G+
Sbjct: 77 ---------EEAISWQERRMSAAPPG--CSPRALLDISWFTESLAAGQP----------- 114
Query: 138 DVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPD 197
E + +E + P SP + A P +HH
Sbjct: 115 ----VPVECRHRLEVARPGKGPPSPAWMPAY------ACQRPTPVTHH------------ 152
Query: 198 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 -NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSR 211
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 317
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ +
Sbjct: 212 VVQELLEHGVCEEVERVRHSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLQEQP-- 269
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG--- 374
++ Q +++ E P V C + G SCG
Sbjct: 270 --------------------QKLTQQQKVAPPGPEHPSPAVRCRCPAAG--GGRSCGAGH 307
Query: 375 -----------DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV 423
+++ H SH ++ ++ F R IF G +G
Sbjct: 308 AWGHRHTDRRLPQGLILYHQHHHSHWESPTRLAQQSHMDAFERSFCIFRLPQAPGAAAGG 367
Query: 424 DTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDT 482
+ P + R+D V P + F L+ WTG+ + R LR + + KG L+
Sbjct: 368 TPR----SCPSWKAV-RVDLVVVPISQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSH 422
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
GLF +T +E+++F LG +L P +RN
Sbjct: 423 GLF----------DPEQKTFFHASSEEDIFRHLGLEYLPPEQRN 456
>gi|295659048|ref|XP_002790083.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281985|gb|EEH37551.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 691
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 109/485 (22%), Positives = 195/485 (40%), Gaps = 71/485 (14%)
Query: 74 VIRYQWLEDSLRLGEKVSED---LYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRK 130
V++ WL++SL+ G V +YR + ENI + + S+ S+ ++
Sbjct: 171 VLKLSWLDESLKAGRAVPLAPYIIYRARKIAPPENIT--FPETVSNPASESATPRSTSKQ 228
Query: 131 KIKSSTEDVEHFQAESKGDVETNALSE----APNSP----------MSSESLTNTLSTAS 176
+ SS +E A++ T S A N P +
Sbjct: 229 RESSSKGILERAMADAASSSPTPIKSRLARRADNRPPIQNPPPKLVRETTEEHEAAEAPP 288
Query: 177 ASPDFSSHHI---TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE 233
+PD+ +++ S +PP N+ K+ I ++ +Y AI I
Sbjct: 289 RTPDWVRNNLIYACQRSAFLHPP--NEAFINQLDKIKKIRELTLDEIGVRAYSTAIASIA 346
Query: 234 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG--KLSKLEHFEKDEKVRTISLFGEVWG 291
P+ ++SA +V LPG + E +G L + D + ++ F + G
Sbjct: 347 AYPYPLKSATEVSSLPGCEVKIATLFSEFNQSGDGTLESANQLDTDPVLSVLNKFNNILG 406
Query: 292 IGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR EVE + +
Sbjct: 407 VGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRSEVESIADTVL 466
Query: 349 KAGEEVLPEVII---------LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
+ + V PE + + G YRRGK CGD+D+++ H + + + V L
Sbjct: 467 RHAKLVRPESQVDYNGAAIEGIIVGGYRRGKECCGDVDLILTHRNERVTHYLVYDVVASL 526
Query: 400 KEMKFLREDL---IFSTHSEEGT-----DSGVDTYF-----GLCTYPGREL--------- 437
++ ++ L + ++H E+ T D+G +F L +
Sbjct: 527 EQEGWITHTLALHLTNSHREQQTLPFRGDTGGMPHFDTLDKALVVWQDPHFEKDGNGDMD 586
Query: 438 ----------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFP 486
R+D + P ++ WTG R LR A+ ++ D +G+
Sbjct: 587 EETSNRNPNPHRRVDIIISPWRTIGCAIVGWTGGTTFERDLRRYAKKVHNWKFDSSGVRS 646
Query: 487 ATYGS 491
GS
Sbjct: 647 RNKGS 651
>gi|255935563|ref|XP_002558808.1| Pc13g03710 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583428|emb|CAP91440.1| Pc13g03710 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 662
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 169/403 (41%), Gaps = 53/403 (13%)
Query: 172 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKA 228
+ A PD+ H+ L P L+ + +L+ I R L D +Y +
Sbjct: 261 VENAPPQPDWVRDHVVYACLRSAP--LHPPNEDFISQLVKIRRIRELTLDEIGVRAYSTS 318
Query: 229 IPVIEKLPFKIESADQVKGLPGIGKSMQD---------HIQEIVTTGKLSKLEHFEKDEK 279
I + P I+ ++ LPG + D + G ++ E E D
Sbjct: 319 IAALAAYPHPIQRPSEILALPGCNAKIADLFFQFQQHGGCEHTDDDGNVAAAEALETDPM 378
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPR 337
+R ++ F ++WG+G TA+ Y++G R LDD+ D+L+ Q++G+K++++ +PR
Sbjct: 379 LRVLNSFYQIWGVGAKTARDFYQRGWRDLDDIVEHGWDTLSRVQQIGVKFYEEFLEGVPR 438
Query: 338 HEVEQMERLLQKAGEEVLPE----VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS 393
E E + +++ V E + + G YRRGK GD+D+V+ H D + +
Sbjct: 439 AESEGIASVIRDHAGRVRGEEGNGIECVIVGGYRRGKELSGDVDIVVSHRDDAVTRNLVV 498
Query: 394 KYVKKLKEMKFLREDL---IFSTHSEEGT--------------DSGV---------DTYF 427
V L+ +++ L + S+ E+ T D + DT
Sbjct: 499 DVVASLEAERYITHTLALHLTSSLREQQTLPFDGDDRRKFDTLDKALVVWQDPDFDDTTP 558
Query: 428 GLCTYPGRE----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDT 482
G + G++ + R+D + P ++ W+G+ R LR A +++ + D +
Sbjct: 559 GHNEHQGKKKNPNIHRRVDIIISPWRTVGCAVLGWSGDMTFERDLRRYAKKARSLKFDSS 618
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G+ SG + + + EK V + LG W P ER
Sbjct: 619 GVRDRV--SGRQVDLERDGETWEEREKLVMEGLGIGWRPPEER 659
>gi|58737085|dbj|BAD89435.1| DNA polymerase mu [Coprinopsis cinerea]
Length = 608
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 116/543 (21%), Positives = 207/543 (38%), Gaps = 123/543 (22%)
Query: 64 MDLEALLQQSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 123
+D + Q++++ QWL+DS+ G + Y I + + I+ + +
Sbjct: 106 VDWKIARQKAIVTPQWLKDSVEAGHGLPCGKY--------AAIGELIEETIENCPDPDNC 157
Query: 124 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP---- 179
+ SH +H +++S P S++ + N +P
Sbjct: 158 DDCSHSH---------DHPRSQSM------------KPPSSAKGVANPSPAVEPTPARVH 196
Query: 180 -DFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFK 238
++ + ++ + P N+++ E L G + +Y +A+ VI+ P K
Sbjct: 197 ANWRARYVCQRASPLKCP--NQDLVEALSVLCRDRELEGLHPNALAYQRAVAVIKSYPHK 254
Query: 239 IESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG-- 293
I+ + +V LPG+G + +QE + G +S+++ ++ +T+S F ++GIG
Sbjct: 255 IDQDNLESEVSKLPGMGGKIFSKVQEFLEKGSISEVQETLASDRYQTLSTFATIYGIGPG 314
Query: 294 -----------------------PATAQKLY-----------EKGHRTLDDLKNEDSLTH 319
P +A++ Y E+ R ++D + + T
Sbjct: 315 KAQHFYDMGMRTISDLERYYDIDPPSAEEGYSATSVESMQAVERLLREMEDWGYDVTFTP 374
Query: 320 SQR-------------------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
+ + + L + IPR EVE+M ++ + +E+ P +
Sbjct: 375 NGKRVPSKTSKRGNKPPDLTVPVALALRGEFDLPIPREEVEEMRDVVMRELDELQPGCVS 434
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI--------FS 412
G YRRGK D+D+V H D ++ + +L R+ LI F
Sbjct: 435 TIVGGYRRGKPQSNDVDIVFSHTDWENGAEIIKGLCTRLT-AHMHRKGLITHVMHLSGFH 493
Query: 413 THSEEGTDSGVDTYFGLCTY-------PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN 465
H TD LC + G L R+D Y +I WTG+ +
Sbjct: 494 AHDALKTDHWDSLEKSLCVFRLPETPTSGPRLHRRLDLIFAAPQSYWTAVIGWTGSKMFQ 553
Query: 466 RRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF-DTEKEVFDFLGFPWLEPH 523
R LRL A + +G + D GL R T L +EKEVF LG W++P
Sbjct: 554 RDLRLWAKQERGMKFDSNGL-----------TRRHDTRLYLPKSEKEVFSILGLDWIDPT 602
Query: 524 ERN 526
RN
Sbjct: 603 MRN 605
>gi|71005486|ref|XP_757409.1| hypothetical protein UM01262.1 [Ustilago maydis 521]
gi|14456135|emb|CAC41651.1| putative DNA polymerase X [Ustilago maydis]
gi|46096415|gb|EAK81648.1| conserved hypothetical protein [Ustilago maydis 521]
Length = 749
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 132/288 (45%), Gaps = 36/288 (12%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I++ + ++ + K+++ R +F V+GIG A++ + G TL+ L+ E SL
Sbjct: 467 IKQRLLLDRVDAINSLSKEDRARV--MFQRVYGIGATKAERFVQAGFLTLEQLR-EASLE 523
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+GL + +DI+ IPR E +Q +L V ++ I GS+RRG DLD
Sbjct: 524 RAQRIGLNHMNDIECLIPRSESQQWLDVLLDVVRSVDSKLSIELLGSFRRGDHYSSDLDF 583
Query: 379 VIMHPDRKSHK-----------------GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
V+ HPD + L+ + ++++ L +DL+
Sbjct: 584 VLFHPDVIEMRLPRPDNPSKSDPHPLAATLLNNVIVQMRKRNLLADDLL---------AH 634
Query: 422 GVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
G G+ RID P AF +A TG+ L LR A+SKG+ L++
Sbjct: 635 GPLAVKGIVRLSATNKARRIDLNFAPFIRRAFYTLAKTGDADLMVHLRAKAKSKGWALNE 694
Query: 482 TGLFPATYGSGGKQGVRARTSL--KFDTEKEVFDFLGFPWLEPHERNL 527
GL G + G T+L + E+++F FL P+L+P ER+
Sbjct: 695 YGL-----GPPNQNGSAWTTNLLQEATDERQIFAFLNVPYLKPKERSF 737
>gi|67539888|ref|XP_663718.1| hypothetical protein AN6114.2 [Aspergillus nidulans FGSC A4]
gi|40738899|gb|EAA58089.1| hypothetical protein AN6114.2 [Aspergillus nidulans FGSC A4]
gi|259479696|tpe|CBF70157.1| TPA: terminal deoxynucleotidyl transferase, putative
(AFU_orthologue; AFUA_2G08840) [Aspergillus nidulans
FGSC A4]
Length = 665
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 141/335 (42%), Gaps = 48/335 (14%)
Query: 236 PFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGIG 293
P++I Q+ LPG + + E + G L+ E +KD +RT+ F +WG+G
Sbjct: 331 PYEIRRGSQILSLPGCDSKIANLFVEFKASESGTLAAAEALDKDPDLRTLHTFYNIWGVG 390
Query: 294 PATAQK-LYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 350
TA++ Y + R LDD+ SL+ Q++G+KY+D+ IPR E E + +++ +
Sbjct: 391 SKTAREFFYARQWRDLDDIVEHGWHSLSRVQQIGVKYYDEFLLDIPREETEAIGKIICQH 450
Query: 351 GE--EVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
V P E II+ GSYRRGK D+D+++ H D + V L
Sbjct: 451 ANSASVRPTAQYDGHGVECIIV--GSYRRGKPVSHDVDIILSHRDEAITHNLVVDVVASL 508
Query: 400 KEMKFLREDLIF---------STHSEEGTD------SGVDTYFGLCTYPGREL------- 437
+ ++ L T G D +D + P +L
Sbjct: 509 ESEGWITHTLALHLTTSKRDQQTLPYRGDDDDRNHFDSLDKALVVWQTPKDKLGSGTQAS 568
Query: 438 ------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYG 490
R+D V P ++ W+G+ R LR A ++ G++ D +G+ G
Sbjct: 569 SANTNPHRRVDIIVSPWRTVGCAVLGWSGDTTFERDLRRYAKKAHGWKFDSSGVRERVTG 628
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G + AR + E+ V + LG W P ER
Sbjct: 629 -GQVIDLEARGETWQERERMVMEGLGVGWRPPEER 662
>gi|378731420|gb|EHY57879.1| DNA polymerase IV [Exophiala dermatitidis NIH/UT8656]
Length = 749
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 151/357 (42%), Gaps = 67/357 (18%)
Query: 190 SLLYNPPD--LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG 247
S NPP+ +T+I I I +G +Y +I I P+ I A+++
Sbjct: 302 STPMNPPNSAFIAQLTKIRDARILILDDIG----VRAYSSSIASIAAYPYLIRHAEEINR 357
Query: 248 LPGIGKSMQDHIQEIVTTG------KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301
LPG + + E +G + + E D ++ + LF +WG+GP TA+K Y
Sbjct: 358 LPGCNEKIAMLWNEWYHSGPEDSERSIQTVTDLENDIDLQHLRLFWNIWGVGPETARKFY 417
Query: 302 -EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL--- 355
E G + L+D+ +L Q++G+KY+D+ + +IPR EVEQ+ ++ + VL
Sbjct: 418 FEHGWQDLNDVVEFGWSTLNRVQQIGVKYYDEFQEKIPRAEVEQIGEVIHRHARGVLDIK 477
Query: 356 ------PEVI--ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL-- 405
PE + I+ GG YRRGK + GD+DVV+ H D + + V+ L+ ++
Sbjct: 478 SSQYGTPEDVECIIVGG-YRRGKTASGDVDVVLSHRDESKTQDLVGYVVRSLEIEGWITH 536
Query: 406 ----------REDLIFSTHSEEGTDSGVDTY-FGLCTY---------------------- 432
R +E G D+ LC +
Sbjct: 537 TLTLHTTTSDRAQATVPFRAERQGRGGFDSLDKALCVWQDPHFEGADEGGGGEGEEDDEE 596
Query: 433 ----PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGL 484
+ R+D + ++ W+G + R + R +A ++G++ D +G+
Sbjct: 597 KPKVKNPNIHRRVDIIISAWRTVGCAVLGWSGGNTFQRDMRRFVANTRGWKFDSSGV 653
>gi|302848729|ref|XP_002955896.1| hypothetical protein VOLCADRAFT_96792 [Volvox carteri f. nagariensis]
gi|300258864|gb|EFJ43097.1| hypothetical protein VOLCADRAFT_96792 [Volvox carteri f. nagariensis]
Length = 1420
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 88/146 (60%), Gaps = 5/146 (3%)
Query: 214 RALGEDRRSFSYYKAIP----VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 269
R L DRR KAI V+ ++ + +ES DQ+ L +G+ + + EI+ TG+ S
Sbjct: 940 RDLYMDRRDQFRIKAIDRGMGVLARVSWPLESPDQLSQL-RLGRGTAEKVSEILATGRFS 998
Query: 270 KLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFD 329
+ + FE+DE+ T+ F +VWG G +TA+ + G R+LDD++ LT QRLGL++FD
Sbjct: 999 RNDMFEQDEQRMTMMKFMQVWGCGESTARSWWASGARSLDDVRQRTDLTVRQRLGLRHFD 1058
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVL 355
D + RIPR E+ Q+ ++++ E L
Sbjct: 1059 DFQRRIPRAEITQIAAVVRQVTIETL 1084
>gi|403217348|emb|CCK71842.1| hypothetical protein KNAG_0I00510 [Kazachstania naganishii CBS
8797]
Length = 588
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 113/477 (23%), Positives = 185/477 (38%), Gaps = 87/477 (18%)
Query: 113 QIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNA-LSEAPNSPMSSESLTNT 171
+ Q N +SS + +D + +ES+ D+E +S + NSPM + S+
Sbjct: 119 ETQENFPSSSANSEQPSPACTAEMKDTKTSHSESETDIEGFVEMSPSSNSPMPAPSVIPD 178
Query: 172 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 231
A+ + L P +N + + +L Y G+ RS Y A
Sbjct: 179 PPVIKANEKYVR--------LTEIPRMNSQLIDAMQRLYKKYDIKGDHFRSRGYKLAKAS 230
Query: 232 IEKLPFKIESADQVK-GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 290
IEK PF+I+S +Q + L IG S+ IQ I+ +G L L+ + E + + F
Sbjct: 231 IEKCPFQIKSGEQAQLELANIGPSIAKKIQTILASGTLPGLD--DSSELDQRLEYFTNCH 288
Query: 291 GIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
GIG TA++ + + D+ E LG YF+D +I R E E+ +
Sbjct: 289 GIGTHTAKRWLALQYTSFTDVLRGSPQEFVSGWPSLLGWSYFEDWSRKISRTECEKHLSV 348
Query: 347 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS----------------HKG 390
+++ E+ P+ + GSY RG +CGD+D++ + + +G
Sbjct: 349 VKQCLSEIDPDCQVELQGSYNRGSQTCGDIDLLFFKENCDNLVVIAEIFERLVSLLHSRG 408
Query: 391 FLS-----------KYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR- 438
++ ++ KLK + F + +L F + G D + Y+ + R
Sbjct: 409 YIQCILQLTPDLFDEFKSKLKGI-FDKCELPFPAKNHFGNDRHIHKYYLGVKLTKHQYRS 467
Query: 439 ------------------------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
R+DF I WTG+ NR +
Sbjct: 468 EELLRAGQYLHLKPCDNFMSSSSKKSENPCRRLDFFCCKWSELGAARIQWTGSGEFNRWI 527
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
RL A GY+L GLF GG++ L+ E +FD L P + P ER
Sbjct: 528 RLRAAKMGYKLTQHGLF-----KGGQK-------LESFDEGVIFDTLDVPRIPPEER 572
>gi|332865055|ref|XP_001142751.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 3 [Pan
troglodytes]
Length = 457
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 145/339 (42%), Gaps = 46/339 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 369
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ SC + P R + + + F R IF G G
Sbjct: 329 QHSCWE------SPTRLAQQSHMD---------AFERSFCIFRLPQPPGAAVGGS----- 368
Query: 430 CTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 487
T P + R+D V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 369 -TRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF-- 425
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+T + +E+++F LG +L P +RN
Sbjct: 426 --------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|159129305|gb|EDP54419.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
fumigatus A1163]
Length = 704
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 152/367 (41%), Gaps = 69/367 (18%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDAKIAALFAEFQASEHGTLAAADALDTDPVLK 398
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 338
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRR 458
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
E E + + + V P E II+ G YRRGK GD+D+V+ H D K
Sbjct: 459 ETEAIAATITRHANRVRPHASYDGRGVECIIV--GGYRRGKELSGDVDLVLSHRDESVTK 516
Query: 390 GFLSKYVKKLKEMKFLREDLIF--STHSEE--------GTDSG-------------VDTY 426
+ V L+ ++ L +T + E DSG D +
Sbjct: 517 NLVVDLVASLEAEGWITHTLALHMTTSNREQQPLPFQGDDDSGRHFDTLDKALVVWQDPH 576
Query: 427 F----------------GLCTYP---GRELR-------HRIDFKVYPRDIYAFGLIAWTG 460
F G P R+ R R+D + P ++ W+G
Sbjct: 577 FEDGDDDDDDAETTAAGGGADTPEEGARQRRKRNPNVHRRVDIIISPWRTVGCAVLGWSG 636
Query: 461 NDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT-EKEVFDFLGFP 518
+ R LR A ++ G++ D +G+ T SGG+ R ++ E+ V + LG
Sbjct: 637 DTTFERDLRRYAKKAHGWKFDSSGVRERT--SGGQVIDLERGGETWEERERLVLEGLGVG 694
Query: 519 WLEPHER 525
W P ER
Sbjct: 695 WRPPQER 701
>gi|71001074|ref|XP_755218.1| terminal deoxynucleotidyl transferase [Aspergillus fumigatus Af293]
gi|66852856|gb|EAL93180.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
fumigatus Af293]
Length = 704
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 152/367 (41%), Gaps = 69/367 (18%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDAKIAALFAEFQASEHGTLAAADALDTDPVLK 398
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 338
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRR 458
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
E E + + + V P E II+ G YRRGK GD+D+V+ H D K
Sbjct: 459 ETEAIAATITRHANRVRPHASYDGRGVECIIV--GGYRRGKELSGDVDLVLSHRDESVTK 516
Query: 390 GFLSKYVKKLKEMKFLREDLIF--STHSEE--------GTDSG-------------VDTY 426
+ V L+ ++ L +T + E DSG D +
Sbjct: 517 NLVVDLVASLEAEGWITHTLALHMTTSNREQQPPPFQGDDDSGRHFDTLDKALVVWQDPH 576
Query: 427 F----------------GLCTYP---GRELR-------HRIDFKVYPRDIYAFGLIAWTG 460
F G P R+ R R+D + P ++ W+G
Sbjct: 577 FEDGDDDDDDAETTAAGGGADTPEEGARQRRKRNPNVHRRVDIIISPWRTVGCAVLGWSG 636
Query: 461 NDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT-EKEVFDFLGFP 518
+ R LR A ++ G++ D +G+ T SGG+ R ++ E+ V + LG
Sbjct: 637 DTTFERDLRRYAKKAHGWKFDSSGVRERT--SGGQVIDLERGGETWEERERLVLEGLGVG 694
Query: 519 WLEPHER 525
W P ER
Sbjct: 695 WRPPQER 701
>gi|397467155|ref|XP_003805292.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Pan
paniscus]
Length = 457
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 145/339 (42%), Gaps = 46/339 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 369
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ SC + P R + + + F R IF G G
Sbjct: 329 QHSCWE------SPTRLAQQSHMD---------AFERSFCIFRLPQPPGAAVGGS----- 368
Query: 430 CTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 487
T P + R+D V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 369 -TRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF-- 425
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+T + +E+++F LG +L P +RN
Sbjct: 426 --------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|339522243|gb|AEJ84286.1| DNA polymerase beta [Capra hircus]
Length = 141
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 198 LNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANCEKNVTQAIHKDNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 315
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 316 SLTHSQRLGLK 326
L H QR+GLK
Sbjct: 131 KLNHHQRIGLK 141
>gi|61553055|gb|AAX46342.1| polymerase (DNA directed), mu [Bos taurus]
Length = 341
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
T Q+ GL++ D+ I R +VE +++ ++ A + LP + GS+RR
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGSFRRA 320
>gi|320583635|gb|EFW97848.1| Mitochondrial intermediate peptidase [Ogataea parapolymorpha DL-1]
Length = 1600
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 199 NKNITEIFGKLINIYRAL-----GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
N + + F + I IY + R +Y AI IE L + SA +K
Sbjct: 118 NAKVVKRFEEAIRIYELMQFFDKNNAFRIKNYRLAISAIESLDKPLTSAQDLKQFGLDRG 177
Query: 254 SMQDHIQEIVTTGKLSKLEHFEK----DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 309
+ H++EI+ TG SKLE ++ DE+ + ++ F +++G+G TA + + G++++
Sbjct: 178 GIAQHVEEILQTGTFSKLETLKQQEMGDERYQLMTQFKKIYGVGDKTAYRFVKAGYKSIQ 237
Query: 310 DLKNED----SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 365
D+ ++ SLT +Q+LG+ YFD+ RIPR EVE+ + + EE+ + ++ GS
Sbjct: 238 DIVHDQEMYASLTDAQKLGILYFDEWNERIPRTEVEEHYNFVVREAEEIDKNLKVMLMGS 297
Query: 366 YRRGKASCGDLDVVI 380
YRRG + GD+D+++
Sbjct: 298 YRRGAETSGDIDLIV 312
>gi|426356075|ref|XP_004045417.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Gorilla
gorilla gorilla]
Length = 457
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 144/338 (42%), Gaps = 44/338 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 369
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ SC + P R + + + F R IF G G T
Sbjct: 329 QHSCWE------SPTRLAQQSHMD---------AFERSFCIFRLPQPPGAAVGGSTR--- 370
Query: 430 CTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 488
P + R+D V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 371 -PCPSWKA-MRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF--- 425
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+T + +E+++F LG +L P +RN
Sbjct: 426 -------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|345569152|gb|EGX52020.1| hypothetical protein AOL_s00043g410 [Arthrobotrys oligospora ATCC
24927]
Length = 642
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT---GKLSKLEHFEKDEKV 280
+Y +I I P KI Q+ LPG + E + G+L LE EK
Sbjct: 260 AYSTSIASIAAFPHKITHISQIHALPGCEGKIGALWYEFTHSEPPGRLGVLEETEKSVYY 319
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 338
+T+ LF VWG G +AQ Y++G R LDDL + LT Q++G+K++D+ + +IPR
Sbjct: 320 KTLELFYNVWGAGAHSAQSFYKQGFRDLDDLVEHHWKKLTRVQQIGVKFYDEFQDKIPRD 379
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
EV + +Q ++LP G +RRGK D+D++I HP
Sbjct: 380 EVISIRDAIQNHARQLLPGAETAVVGGFRRGKELSADVDLLITHP 424
>gi|392574923|gb|EIW68058.1| hypothetical protein TREMEDRAFT_32680 [Tremella mesenterica DSM
1558]
Length = 553
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 164/364 (45%), Gaps = 48/364 (13%)
Query: 198 LNKNITEIFGKLINIYRALGEDR-----RSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 252
+N++I + K I +YR EDR SY +++ +++ +P +I S + L +G
Sbjct: 200 VNQDIIDAI-KPILLYREY-EDRDQVNSNVLSYRRSLSMLKSVPRRIRSGKEAMKLADVG 257
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 311
+ + I E ++TG +++ ++ + + ++ F V+ IG TA++LY+K + RTL+D+
Sbjct: 258 EKVAIRIDEYLSTGSVAESQNILSSSRYQALNEFASVYTIGKVTAKELYDKWNCRTLEDV 317
Query: 312 KN--------------EDSLTHSQRLGLKYFDDIKTRI-------PRHEVEQMERLLQKA 350
+ ++ + + G+ + D ++ + EV+++ + +
Sbjct: 318 RKHYEFLAGEAPEVREKEKIRRRKSGGMLHVDIVEAWMGLKSELDTPDEVQEIADCVMEH 377
Query: 351 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI 410
+L G YRRGK D+D+V P G L +L + + L
Sbjct: 378 LSALLDGCQYTITGGYRRGKPQSNDVDIVFCPPREGQDVGLLRDLTLRLSTVDIITHVLH 437
Query: 411 FST-------HSEEGTDSGVDTYFGLCTYPGR-ELRHRIDFKVYPRDIYAFGLIAWTGND 462
++ HS +D F + PG+ L R+D P++ YA +++W+G+
Sbjct: 438 TTSRDAETPIHSTPNNFDNLDKAFVIFRLPGKGRLHRRVDLISAPKERYAAAVLSWSGSM 497
Query: 463 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
+ R LR E +G + + P+T T + TE+E+FD++G ++ P
Sbjct: 498 MFERDLRRHIERRGLKFRAGLIDPSTT-----------TEINLPTEREIFDYVGLRYVPP 546
Query: 523 HERN 526
RN
Sbjct: 547 ELRN 550
>gi|299472566|emb|CBN80507.1| DNA polymerase mu [Ectocarpus siliculosus]
Length = 587
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 170/401 (42%), Gaps = 90/401 (22%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N IT++ + +Y+ +G+ +R+ S+ + V+ L I S +++ + +G+ M +
Sbjct: 201 NHEITDVLDAMTKMYKVVGDGQRADSFMRLSSVLRFLDRTIRSGSEIRHVHHVGERMVEA 260
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-----LKN 313
+ EI+ TG L +LE + + + +V G+G TA+ Y +G R+++D L N
Sbjct: 261 VDEILATGTLGRLEELKSHPRNQVCQQLMKVHGVGSRTAKDWYNRGIRSVEDARRTLLPN 320
Query: 314 EDSLTHSQR---------LGLKYFDDIKTRIPRHEV----EQMERLLQKAGEEVLPEVII 360
+D ++ +GLK+F D++ I R EV +++ ++ G E PE +
Sbjct: 321 DDDTEGDEKRPNLKPEVVMGLKHFHDMQVPIGRDEVVGIADEVREEAERFGRERDPEGTL 380
Query: 361 L---CGGSYRRGKASCGDLDVVIMH---PDRKSHKGFLSK-------------------- 394
L CGG +RRGK + D+DV++ H+GF+
Sbjct: 381 LFEVCGG-FRRGKETLHDVDVLVSFRRGNGEPGHQGFVEALRALDGYLVEGEQIVGAEVK 439
Query: 395 --------YVKKLKEMKFLREDLIFSTHSEEGTDSGV----------------DTYFGLC 430
+V+ LKE R L + + +G G + L
Sbjct: 440 AFEDLEYFFVEGLKERLMERGKLCATLY--QGQMGGFTKAKGGQAPQPKLEREEVLMALW 497
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG-YRLDDTGLFPATY 489
PGR+ RID + F L+ W+G + + +R E + Y+L G+
Sbjct: 498 QLPGRKC--RIDIVQVASSQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVT---- 551
Query: 490 GSGGKQGVRARTS-----LKFDTEKEVFDFLGFPWLEPHER 525
+RA + F TE+++F FLG ++ PH R
Sbjct: 552 -------IRATDEPVTDIVSFQTEEDIFRFLGLEYIPPHLR 585
>gi|38566017|gb|AAH62590.1| POLM protein [Homo sapiens]
gi|119581528|gb|EAW61124.1| polymerase (DNA directed), mu, isoform CRA_d [Homo sapiens]
Length = 457
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 144/339 (42%), Gaps = 46/339 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 369
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ SC + P R + + + F R IF G G
Sbjct: 329 QHSCCE------SPTRLAQQSHMD---------AFERSFCIFRLPQPPGAAVGGS----- 368
Query: 430 CTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 487
T P + R+D V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 369 -TRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF-- 425
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+T + +E+++F LG +L P +RN
Sbjct: 426 --------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|212532843|ref|XP_002146578.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
marneffei ATCC 18224]
gi|210071942|gb|EEA26031.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
marneffei ATCC 18224]
Length = 710
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 64/358 (17%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I + P+++ + +V LPG + + E + GKL + D +
Sbjct: 358 AYSTSIAALAAYPYELRTPVEVLTLPGCDTKIANLFVEFRNSADGKLEAANVLDSDPVIN 417
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 338
TI F +WG+G TA+ Y ++ R LDD+ +SL+ Q++GLKY+D+ IPR
Sbjct: 418 TIHQFYNIWGVGAKTARDFYYQRQWRDLDDVIEHGWNSLSRVQQIGLKYYDEFLAGIPRA 477
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
EV ++ + + + V P E II+ G YRRGK + GD+D+++ H D + K
Sbjct: 478 EVAEIAKTIHRHANMVRPGCEYDGQGIECIIV--GGYRRGKETSGDIDLILSHRDERVTK 535
Query: 390 GFLSKYVKKLKEMKFLREDLIF---STHSEEGT-----DSG------VDTYFGLCTYPGR 435
+ V L+ ++ L +++ E+ T D G +D + P
Sbjct: 536 DLVIDVVGSLESEGWITHTLALHMTTSNREQQTLPFRGDPGSHHFDSLDKALVVWQDPNF 595
Query: 436 EL----------------------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA- 472
E R+D + P ++ W+G+ R LR A
Sbjct: 596 EAAPTSTNNAEADAEAEPVKNPNPHRRVDIIISPWRTVGCAVLGWSGDTTFERDLRRYAK 655
Query: 473 ESKGYRLDDTGLFPATYGSGG-----KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G++ D +G+ T SGG ++G R + E+ V + LG W ER
Sbjct: 656 KAHGWKFDSSGVRERT--SGGHVIDLEKGGRTWE----ERERLVMEGLGVGWRPASER 707
>gi|425766657|gb|EKV05260.1| Terminal deoxynucleotidyl transferase, putative [Penicillium
digitatum Pd1]
gi|425775308|gb|EKV13586.1| Terminal deoxynucleotidyl transferase, putative [Penicillium
digitatum PHI26]
Length = 663
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 148/355 (41%), Gaps = 62/355 (17%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSM-------QDH--IQEIVTTGKLSKLEHF 274
+Y +I + P I+ ++ LPG + Q H G ++ +
Sbjct: 315 AYSTSIASLAAYPHPIQRPSEILALPGCNAKIAELFSQFQQHGGCNHTDDDGNVATADAL 374
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 332
E D + ++ F ++WG+G TA++ Y++G R LDD+ +L+ Q++G+K++++ +
Sbjct: 375 ETDPALCVLNSFYQIWGVGAKTAREFYQRGWRDLDDIVEHGWSTLSRVQQIGVKFYEEFQ 434
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCG------GSYRRGKASCGDLDVVIMHPDRK 386
+PR E E + +++ V PE CG G YRRGK GD+DVV+ H D
Sbjct: 435 QGVPRAESEGIATVIRDHAGRVRPEAGGGCGIECVIVGGYRRGKGLSGDVDVVLSHRDDA 494
Query: 387 SHKGFLSKYVKKLKEMKFLREDLIFSTHSE---------EGTDS------------GVDT 425
+ + V L+ + + L S +G D+ D
Sbjct: 495 VTRNLVVDVVASLEAERCITHTLSLHLTSSLREQQTLPFDGDDTRKFDTLDKALVVWQDP 554
Query: 426 YFGLCTYPGRE--------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKG 476
+F T PG + + R+D + P ++ W+G+ R LR A +++
Sbjct: 555 HFDP-TIPGHDGHQGGNPNIHRRVDIIISPWRTIGCAVLGWSGDLTFQRDLRRYAKKARS 613
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFD------TEKEVFDFLGFPWLEPHER 525
+ D +G+ + G + L+ D EK V + LG W P ER
Sbjct: 614 LKFDSSGVRDRSTGR--------QIDLEHDGETWEEREKLVMEGLGVGWRPPEER 660
>gi|242776717|ref|XP_002478888.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218722507|gb|EED21925.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 707
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 154/355 (43%), Gaps = 61/355 (17%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I + P+++ + +V LPG + + E + G+L + + D +
Sbjct: 358 AYSTSIAALAAYPYELRTPVEVLSLPGCDTKIANLFVEFRNSSDGRLEAADVLDTDPVIS 417
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 338
TI F +WG+G TA++ Y ++ R LDD+ ++L+ Q++GLKY+D+ IPR
Sbjct: 418 TIHQFYNIWGVGARTAREFYYQRQWRDLDDVIVHGWNNLSRVQQIGLKYYDEFLAGIPRT 477
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
EV ++ + + + P E II+ G YRRGK + GD+D+V+ H D + K
Sbjct: 478 EVAEIAKTIHRHAILARPGCEYDGQGIECIIV--GGYRRGKETQGDIDLVLSHRDERVTK 535
Query: 390 GFLSKYVKKLKEMKFL------------REDLIFSTHSEEGT------DSGV----DTYF 427
+ V L+ ++ RE S H + G+ D + D +F
Sbjct: 536 DLVLDVVGSLENGGWIKHTLALHMTTSNREQQTLSFHGDPGSHHFDSLDKALVVWQDPHF 595
Query: 428 -----------GLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 475
G R+D + P ++ W+G+ R LR A ++
Sbjct: 596 EADNNIENEGEGEVQRKNSNPHRRVDIIISPWRTVGCAVLGWSGDTTFERDLRRYAKKAH 655
Query: 476 GYRLDDTGLFPATYGSGG-----KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G++ D +G+ T SGG ++G R + E+ V + LG W ER
Sbjct: 656 GWKFDSSGVRERT--SGGHVIDLEKGGRTWE----ERERLVMEGLGVGWRPASER 704
>gi|432113117|gb|ELK35695.1| DNA nucleotidylexotransferase [Myotis davidii]
Length = 466
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 46/335 (13%)
Query: 223 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 146 LAFMRAASVLKSLPFTIVSMKDTEGIPCLGDRVKSIIEEIIEDGESSEVKAVLNDERYQS 205
Query: 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEV 340
LF V+G+G T++K + G RTL ++++ +L T Q+ G Y++D+ + + + E
Sbjct: 206 FKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKTLKFTRMQKAGFLYYEDLVSCVTQAEA 265
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV------IMHPDRKSHKGFLSK 394
E + L+++A LP+ + G +R L + + D S G LS
Sbjct: 266 EAVGVLVKEAVWAFLPDAFVTVTGGFRSSAVKRPWLGLSNRQIPPLQREDNTSRPGLLSG 325
Query: 395 YVKKLKEMKFLREDLIFSTHSEEGTDS-GVDT--YFGLCTYPGRELRH------------ 439
+ L L DL+ ST + S VD +F C + +L H
Sbjct: 326 RGRGL----LLYYDLVESTFEKFKLPSRKVDALDHFQKC-FLILKLHHQRVDGGKSSQQE 380
Query: 440 -------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGS 491
R+D + P + AF L+ WTG+ R LR A + LD+ L+ T
Sbjct: 381 GKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDKT--- 437
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R L+ ++E+++F LG +++P ERN
Sbjct: 438 -------KRIFLEAESEEDIFAHLGLEYIDPWERN 465
>gi|260893633|ref|YP_003239730.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
gi|260865774|gb|ACX52880.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
Length = 576
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 150/346 (43%), Gaps = 55/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLP---FKIESADQVKGLPGIGKS 254
N + IF ++ I LGED R +Y +A+ IE LP I + ++ +PGIGK
Sbjct: 3 NAEVCAIFREMAAIMEILGEDPYRIRAYQRAVQNIENLPEDIAVIAARGELTKIPGIGKE 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDD 310
+ I+EI+ TG L K E ++ + L +V GIGP TA+ LYE K L+
Sbjct: 63 LARKIEEILATGTLQKYEELKRKVPPGLVELL-QVPGIGPKTAKLLYERLGVKSLAELEQ 121
Query: 311 LKNEDSLT----------HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
L E L + R G+ ++ R P V + R + E P +
Sbjct: 122 LAKEGKLKGLPGIGAKTEENIRRGIALLRSVEERRPLGLVLPLARAVVNLLREKAPVKRV 181
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK-FLREDLIFSTHSEEGT 419
GS RR K + GD+D+ L+ + + +K F L+ ++ T
Sbjct: 182 DLAGSIRRFKETVGDVDI-------------LAASTRPEEVIKIFTTLPLVAEVLAQGPT 228
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+ V T GL +ID +V P + Y L +TG+ N R+R LA +G ++
Sbjct: 229 KASVRTGDGL----------QIDLRVVPPESYGAALCYFTGSKAHNIRVRELAVKQGLKV 278
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F R + TE+EV+ +G P++ P R
Sbjct: 279 NEYGVF------------RGEERIAGATEEEVYAAVGLPYIPPEIR 312
>gi|198417873|ref|XP_002122503.1| PREDICTED: similar to DNA polymerase mu (Pol Mu) [Ciona
intestinalis]
Length = 486
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 146/338 (43%), Gaps = 50/338 (14%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS-------MQDHIQEIVTTGKLSKLEH 273
R+ S+ + ++ L K+ +Q+ +P + + + I+EI+ G + E
Sbjct: 164 RALSFRRGSASLKALHHKVTHVEQLANIPYVDSTNSSKIGHCKKVIKEILEEGFSDEAEG 223
Query: 274 FEKDEKVRTISLFGEVWGIGPATAQK-LYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDI 331
E +++ +F ++G+GP T +K Y RTL+D++ E+ L Q +G KY++D+
Sbjct: 224 IANSEFYKSMKIFCGIFGVGPNTERKWFYNLKMRTLEDVRKENVHLNKDQAVGFKYYEDL 283
Query: 332 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 391
+ E + +L+Q + + + G +RRGK DLD++I HP +G
Sbjct: 284 NEPLLLEEANHIAKLVQDTCVALRKDTTVTVVGGFRRGKTKGHDLDLMISHPIEGKEEGL 343
Query: 392 LSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT---------YFGLC--------TYPG 434
L + +LKE F ++G+ V T +F C + G
Sbjct: 344 LGLILDQLKEH--------FVYTEKKGSIKKVTTPSDSKNTMDHFEKCFSIFKFQPQWVG 395
Query: 435 REL-------RHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 487
R R+D V + +AF ++ WTG R +R A S+
Sbjct: 396 RSCPSGKGWTAKRVDLIVVSKSQFAFAVLGWTGTKHFEREIRRYARSEK---------KI 446
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
S G + + S +TE+++F+ LG +L P+ER
Sbjct: 447 VLTSHGMYDLDMKESYAAETEEDIFNKLGLKYLPPNER 484
>gi|393237267|gb|EJD44810.1| hypothetical protein AURDEDRAFT_124919 [Auricularia delicata
TFB-10046 SS5]
Length = 513
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 143/367 (38%), Gaps = 110/367 (29%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD- 257
N+ + E + + GE+R SY +AI I+ P + + VK +P +G + +
Sbjct: 204 NQRLIEELAVIRKARKLEGEERSELSYARAIAGIKAQPAEFRTIKDVKDVPFVGAKISNM 263
Query: 258 --------------HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303
++E + G++S+ E E+ +++S V GIGP++A++LY +
Sbjct: 264 VRLHRLPLADPDSSQVEEYLDHGRISEAEELRASERYQSLSALTTVHGIGPSSARELYAR 323
Query: 304 GHRTLD------------------------DLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
G R LD D+++ED L R L D++ +IPR E
Sbjct: 324 GLRDLDALYRFYGVVVPDGYGGWVRNEEELDVQDEDGLDSVIREALALRDELNKKIPRQE 383
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
VE++ + + + + P G Y CG L V+ + PDR +
Sbjct: 384 VERIASAIFRELQAIEP------GCFY----TICGGLVVLRLAPDRTAR----------- 422
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWT 459
R DLIF+ P + Y ++ WT
Sbjct: 423 ------RVDLIFA----------------------------------PPEAYWAAVVGWT 442
Query: 460 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 519
G+ + R LRL A+ G + +D+G+ G + E++VF G PW
Sbjct: 443 GSIMFERDLRLAAKDMGLKFNDSGITKRMNGE----------VIPAKDERDVFAICGLPW 492
Query: 520 LEPHERN 526
+EP RN
Sbjct: 493 IEPVWRN 499
>gi|440903072|gb|ELR53779.1| DNA polymerase mu [Bos grunniens mutus]
Length = 341
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 1/172 (0%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLQEESQRL 268
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RR
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRA 320
>gi|393212574|gb|EJC98074.1| Nucleotidyltransferase [Fomitiporia mediterranea MF3/22]
Length = 476
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 158/387 (40%), Gaps = 88/387 (22%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK--------LSKLE 272
++ ++ A ++ LP I S ++ + G+GK + I ++ G +
Sbjct: 70 KARAFQHAFKALDALPQAITSGEEALKVVGVGKGIARRIDVYLSQGAEGSSPKPAAPPKK 129
Query: 273 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFD 329
E E+ RT+ F V GIG A++LY+ G R+LDDL+N + SL+ R L Y D
Sbjct: 130 TPEDIERERTLLEFRRVPGIGQVKAKRLYDAGCRSLDDLRNPEHFKSLSAPIRAALDYVD 189
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD----- 384
+ R+ R E+E + ++ G + E + GSYRRG SCGD+D++ HP
Sbjct: 190 HLSERVTRAEIETVTNII---GPLISSETRMHAVGSYRRGLPSCGDVDIIFFHPSCTYVP 246
Query: 385 -------------------RKSHKGFLSKYV--KKLKEMKFLRE---------DLIFSTH 414
+G +K+V ++K+ LRE L+ +T
Sbjct: 247 RPGEKTMSCDSSSASSTTPATKRRGRPAKHVTPSQVKQDTLLRELVLRPLERAGLLAATL 306
Query: 415 SEEGTDSGVDTYFGLCTYP------------GRE--LRHRIDFKVYPRDIYAFGLIAWTG 460
+E G + G+ P GR + R+D +YP L+A TG
Sbjct: 307 TE-----GSRKWQGIVRIPLETATSQPASGNGRANCIYRRMDLSLYPTLSEGAALLATTG 361
Query: 461 NDVLNRRLRLLAESKGYRLDDTGLFP------------ATYGSGGKQGVRARTS------ 502
+ N +R A +G L++ GL+ T S + V S
Sbjct: 362 DADFNAHVRRCASKQGLLLNEFGLWKFCPQSSPETETENTSSSKNSENVTGSNSDAEGRW 421
Query: 503 --LKFDTEKEVFDFLGFPWLEPHERNL 527
+ TEKE+ D LG ++ P RN
Sbjct: 422 ELVASSTEKEILDELGVEYVGPERRNF 448
>gi|443896495|dbj|GAC73839.1| DNA polymerase IV [Pseudozyma antarctica T-34]
Length = 570
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 156/369 (42%), Gaps = 55/369 (14%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---------------D 243
N+ + E + N R G+ +Y +AI ++ PF I +
Sbjct: 213 NQMLVEQLELIRNERRLTGDTYAEMAYMRAISALKAYPFHIPDSVTDADFSAELRDLRLA 272
Query: 244 QVKGLPGIGKSMQDHIQEIVTT-----GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
+V+ L G+GK + +++ + ++ + + ++D V ++ F E++GIGP A+
Sbjct: 273 EVEKLKGVGKKVFSLVRQFYHSTSTQEARIVEAKVIQRDRAVFVMNAFAELYGIGPIGAR 332
Query: 299 KLYEKGHRTLDD-LKNEDSL-TH-SQRLGLKYFDDIKTRIPRHEVE----QMERLLQKA- 350
+ Y G R+ D L+ + SL TH S + ++ D++ I R E E ++ RLL +
Sbjct: 333 EAYNAGARSFRDVLERKKSLATHLSAKESVRILADLRQPIGRVECESIADEIMRLLTQLM 392
Query: 351 -GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP------------DRKSHKGFLSKYVK 397
G EV ++ CGG YRRGK DLD++I H D +G ++ V
Sbjct: 393 RGAEVRWQI---CGG-YRRGKPRTYDLDIIIGHTLTASRALHVQLLDDMKKRGLITHIVN 448
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIA 457
L D S D + R L R+D P +Y ++
Sbjct: 449 ISTPHINLEADPDPSAPPPVHIDIANIVVLPPASGAHRALHRRVDLVFCPLHVYGATVLG 508
Query: 458 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 517
WTG+ R LRL A +KG+ GL + T + TE++VF+ L
Sbjct: 509 WTGSLTFERDLRLWARTKGFNFSFDGL----------TNLAENTLVPTATERDVFELLQL 558
Query: 518 PWLEPHERN 526
P++ P RN
Sbjct: 559 PYMPPEWRN 567
>gi|449539952|gb|EMD30953.1| hypothetical protein CERSUDRAFT_163631, partial [Ceriporiopsis
subvermispora B]
Length = 184
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 20/192 (10%)
Query: 261 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSL 317
EI++TG+L +LE FEK E TI+LF ++G+G TA+K Y +G RTL DL K L
Sbjct: 2 EIISTGELRRLE-FEKTEDAETITLFQGIYGVGLNTARKWYNRGCRTLQDLNEGKGGVQL 60
Query: 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 377
+H Q++ +KY+ DI +R+PR E ++ L + P++ I GSYRR + CGD+D
Sbjct: 61 SHVQQIVVKYYADINSRMPRAEAAEILAL------RLDPQLFIAILGSYRRCEPDCGDID 114
Query: 378 VVI--MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
++I + D K+H+G L + + +L L EDL + + Y GLC R
Sbjct: 115 ILITRLTDDGKTHRGLLRRLLGELHAQGILTEDLCLP----DNLNDLELVYRGLC----R 166
Query: 436 ELRHRIDFKVYP 447
H ID P
Sbjct: 167 RDAHSIDSLTIP 178
>gi|34014748|gb|AAQ56190.1| DNA polymerase beta-PAK [Trypanosoma brucei]
Length = 813
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 157/362 (43%), Gaps = 77/362 (21%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 243
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 244 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 298 QKLYEK-GHRTLDDLK--------NED-----------SLTHSQRLGLKYFDDIKTRIPR 337
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGGSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 338 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVIMH---------PDRK 386
EV E L+ + L + + +C GSYRR A+ GD+DV+I P
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLITRKIAADEGATPQGA 547
Query: 387 SHKG------------------FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
S + L+ +V LKE +++ L G +
Sbjct: 548 SEETSREKDGSLKVEKQLEPQEVLAAFVSALKEERYIEATLAQGATKFMGVSRLKSYKYN 607
Query: 429 LCT-----YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
T YP R R+D + + + L+ +TG+ N +R A + + L++ G
Sbjct: 608 AGTANPRMYPAR----RLDIRFVEPECFPAALLYFTGSKNFNVVMRAEAIKRNFILNEYG 663
Query: 484 LF 485
LF
Sbjct: 664 LF 665
>gi|346322989|gb|EGX92587.1| cohesin complex subunit (Psm1), putative [Cordyceps militaris CM01]
Length = 2364
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 29/311 (9%)
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKI 239
++++ P+ + NPP+ + I E+ K I R L D+ +Y +I + P+KI
Sbjct: 2041 YTTYSCQRPTPM-NPPN-DAFIEEL--KNIRTLRLLQGDKIGIRAYSTSIASLAAYPYKI 2096
Query: 240 ESADQVKGLPGIGKS-MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
++ +G S + + QE TG+ + ++D +++ + F +WG+G A A+
Sbjct: 2097 QTP---QGTSICWFSFIAELYQEWHATGQTEETRKSKEDTEIQVLRTFYNIWGVGDANAR 2153
Query: 299 KLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
+ Y+KG R LDD+ SL+ Q++G+KY+DD + +I R EV ++ ++ +
Sbjct: 2154 EFYQKGWRDLDDIVEYGWQSLSRVQQIGVKYYDDFQEKINREEVARIANIILNHARRLDH 2213
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST-HS 415
+ G YRRG+ GD+DV++ H + + + V L+ K++ L ST +S
Sbjct: 2214 GYEMAVVGGYRRGRDENGDIDVLLTHREELKTFKLVERLVLSLESEKYISHTLSLSTRNS 2273
Query: 416 EEGT------------DSGVDT-----YFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
E G +G DT L L R+D V P ++ W
Sbjct: 2274 ERGQVPLPWKGEGSTWGTGFDTLDKAMVVWLDPEEAHALHRRVDIIVSPWKTIGCAMLGW 2333
Query: 459 TGNDVLNRRLR 469
+G R LR
Sbjct: 2334 SGETTFQRDLR 2344
>gi|261328280|emb|CBH11257.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma brucei
gambiense DAL972]
Length = 813
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 157/362 (43%), Gaps = 77/362 (21%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 243
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 244 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 298 QKLYEK-GHRTLDDLK--------NED-----------SLTHSQRLGLKYFDDIKTRIPR 337
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGGSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 338 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVIMH---------PDRK 386
EV E L+ + L + + +C GSYRR A+ GD+DV+I P
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLITRKIAADEGATPQGA 547
Query: 387 SHKG------------------FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
S + L+ +V LKE +++ L G +
Sbjct: 548 SEETSREKDGSLKVEKQLEPQEVLAAFVSALKEERYIEATLAQGATKFMGVSRLKSYKYN 607
Query: 429 LCT-----YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
T YP R R+D + + + L+ +TG+ N +R A + + L++ G
Sbjct: 608 AGTANPRMYPAR----RLDIRFVEPECFPAALLYFTGSKNFNVVMRAEAIKRNFILNEYG 663
Query: 484 LF 485
LF
Sbjct: 664 LF 665
>gi|72389312|ref|XP_844951.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei TREU927]
gi|62358909|gb|AAX79360.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei]
gi|70801485|gb|AAZ11392.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 813
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 157/362 (43%), Gaps = 77/362 (21%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 243
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 244 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 298 QKLYEK-GHRTLDDLK--------NED-----------SLTHSQRLGLKYFDDIKTRIPR 337
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGSSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 338 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVIMH---------PDRK 386
EV E L+ + L + + +C GSYRR A+ GD+DV+I P
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLITRKIVADEGATPQGA 547
Query: 387 SHKG------------------FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
S + L+ +V LKE +++ L G +
Sbjct: 548 SEETSREKDGSLKVEKQLEPQEVLAAFVSALKEERYIEATLAQGATKFMGVSRLKSYKYN 607
Query: 429 LCT-----YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
T YP R R+D + + + L+ +TG+ N +R A + + L++ G
Sbjct: 608 AGTANPRMYPAR----RLDIRFVEPECFPAALLYFTGSKNFNVVMRAEAIKRNFILNEYG 663
Query: 484 LF 485
LF
Sbjct: 664 LF 665
>gi|355712674|gb|AES04428.1| polymerase , mu [Mustela putorius furo]
Length = 330
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 111/213 (52%), Gaps = 4/213 (1%)
Query: 189 PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL 248
P+ L +P N + +E L G + R S+ +A V++ LP ++ + Q++GL
Sbjct: 115 PTPLTHP---NTSFSEALEVLAEAAGFEGSEGRFLSFRRAAAVLKALPSQVTALSQLQGL 171
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 308
P G+ +QE++ G ++E + E+ +T+ LF ++G+G TA + Y G RTL
Sbjct: 172 PNFGERSCRVVQELLEHGVCEEVERVRRSERYQTMKLFTGIFGVGVKTADRWYRDGLRTL 231
Query: 309 DDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
D L+ + Q+ GL+++ ++ + R E E +++ ++ A ++LP + G +R
Sbjct: 232 DSLQEQLQRLTQQQRAGLQHYRELSIPVQRPEAEALQQEVEAAAVDILPGATVTLVGGFR 291
Query: 368 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
RGK D+D+++ HP G L + +L+
Sbjct: 292 RGKLHGHDVDLLLSHPQEGLVAGLLPHVMHRLE 324
>gi|343427145|emb|CBQ70673.1| probable DNA polymerase X-putative [Sporisorium reilianum SRZ2]
Length = 714
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 134/288 (46%), Gaps = 36/288 (12%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 318
I++ + ++ ++ ++++ R +F V+GIG A++ G TL+ L++ SL
Sbjct: 432 IRQRLLEDRVDAIDGLSREDRSRV--MFQRVYGIGATKAERFVHAGFLTLEQLRDA-SLE 488
Query: 319 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
+QR+GLK+ DDI+ IPR E E+ ++ V E+ GS+RRG DLD
Sbjct: 489 RAQRIGLKHMDDIECLIPRAESERWREVMLDVFRTVDAELGAELLGSFRRGDHYSSDLDF 548
Query: 379 VIMHP-----------------DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
V+ HP R L++ V +L+ L ++L+
Sbjct: 549 VLFHPAVTDMRIPRADNPSKSDARPLAASLLTRIVDELRNRHLLADELL---------AH 599
Query: 422 GVDTYFGLCTY-PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 480
G GL P ++R RID P AF +A TG+ L LR A+++G+ L+
Sbjct: 600 GPLAIKGLVRLSPASKVR-RIDLNFAPFTRRAFYTLAKTGDADLMVHLRAKAKARGWALN 658
Query: 481 DTGLFPATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ G+ P GS + + + E+++F+ L P+LEP ER+
Sbjct: 659 EYGVGPPNANGSAWTENLLPDAT----DERQIFELLQVPYLEPEERSF 702
>gi|405120890|gb|AFR95660.1| hypothetical protein CNAG_02160 [Cryptococcus neoformans var.
grubii H99]
Length = 398
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 132/285 (46%), Gaps = 40/285 (14%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------- 311
IQ ++ G + +LE D+ + + F +V G G A++ E+G R+LDDL
Sbjct: 130 IQNLIEDGVIPELEDL--DDSWKAMIEFHKVQGFGRVKARQYVEEGARSLDDLLSAREGN 187
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
+ L+ L ++Y + + T IPR EVE+ ++L+++A P++ GSYRRG++
Sbjct: 188 AQKYKLSEPLTLAVRYHNQMSTMIPRSEVEEFDKLIKQALHLADPKISYQILGSYRRGES 247
Query: 372 SCGDLDVVIMH---PDRKSHK---------GFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
++DVV+ H P ++ + K + + + L +D IFS
Sbjct: 248 ISAEIDVVVWHESFPRWNKNEPRVRKILSISLMGKIMDQFHRSRLLDQDKIFS------- 300
Query: 420 DSGVDTYFGLCTYPGR--ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
SG+ + L T P + + R++ ++ P + F L+ TG+D L LR A GY
Sbjct: 301 -SGLKQFSALTTLPTKADAIHRRLNLRICPLESLPFFLLMNTGDDRLITILRKKAGDMGY 359
Query: 478 RLDDTGL-FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
L++ + P G T K E E+F L P+LE
Sbjct: 360 NLNELAMGLPVDDKDG--------TEFKVKDEAEIFAKLKLPYLE 396
>gi|121698402|ref|XP_001267810.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
clavatus NRRL 1]
gi|119395952|gb|EAW06384.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
clavatus NRRL 1]
Length = 733
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 17/210 (8%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I + P I+ ++ LPG + E + G ++ + D +R
Sbjct: 355 AYSTSIAALAAYPSAIQRPAEILTLPGCDAKIAALFAEFQASADGTVAAAAALDSDPALR 414
Query: 282 TISLFGEVWGIGPATAQK-LYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRH 338
T+ LFG +WG+G TA+ LY++ R LDDL +L+ Q++GLKY+D+ +PR
Sbjct: 415 TLHLFGNIWGVGAKTARDFLYQRHWRDLDDLVEHGWAALSRVQQIGLKYYDEFLAGVPRP 474
Query: 339 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKG 390
E E + R + V P +L GG YRRGK GD+D+V+ H D K
Sbjct: 475 ESEAIARTVAAHAARVRPHARYDARGLDCVLVGG-YRRGKPLSGDVDLVLSHRDESVTKN 533
Query: 391 FLSKYVKKLKEMKFLREDLIF---STHSEE 417
+ V+ L+ ++ L S+H ++
Sbjct: 534 LVLDLVRSLEAAGYITHTLALHMTSSHRDQ 563
>gi|342181099|emb|CCC90577.1| putative mitochondrial DNA polymerase beta-PAK [Trypanosoma
congolense IL3000]
Length = 929
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 81/364 (22%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 243
PD + + +IF L +I +AL E ++ SY A+ +++ +P ++ A
Sbjct: 444 PDHREKLLQIFQSLADINKALDEPYKASSYVIAVEKLKRNDYVYTNIPPNIMPPGVDDAK 503
Query: 244 Q------VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+ V P +G ++ + EI+TTG L++L + +R + +V G+GP TA
Sbjct: 504 RKQLIAAVNATPSVGAKLKGKMVEILTTGDLAELHSLQAKPVIRAVRELTQVHGVGPRTA 563
Query: 298 QKLYEK-GHRTLDDLKNED-------------------SLTHSQRLGLKYFDDIKTRIPR 337
++K G +T+++LK LT +QRLGLKY DIK RIP
Sbjct: 564 VTFFKKHGVKTVEELKQRVEEQEAAEGGKGNSREKPALQLTEAQRLGLKYHSDIKQRIPH 623
Query: 338 HEVE--------QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK--- 386
EV ++ + L K E + +C GSYRR + GD+DV++ ++
Sbjct: 624 EEVRLHEAYLKLRLRKYLGKGYE------LSIC-GSYRRRLPTSGDIDVLVTRKVKEDAQ 676
Query: 387 -----------SHKGFLSKYVKKLKEMKFL--------REDLIFSTHSEEGTD-SGVD-- 424
+ KG S+ K+L+ + L E I +T ++ T GV
Sbjct: 677 TPQHSPSGSGSNDKGNNSQDEKQLEPQEVLAAFVNALKEEGYIEATLAQGATKFMGVSRL 736
Query: 425 ---TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
Y G + P + R+D + + + L+ +TG+ N +R A + + L++
Sbjct: 737 KSYNYHGGGSSPEQYPARRLDIRFVEPECFPAALLYFTGSKNFNVIMRAEAIKRNFVLNE 796
Query: 482 TGLF 485
GLF
Sbjct: 797 YGLF 800
>gi|45190568|ref|NP_984822.1| AEL039Wp [Ashbya gossypii ATCC 10895]
gi|44983510|gb|AAS52646.1| AEL039Wp [Ashbya gossypii ATCC 10895]
gi|374108044|gb|AEY96951.1| FAEL039Wp [Ashbya gossypii FDAG1]
Length = 508
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 152/390 (38%), Gaps = 71/390 (18%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
P + N + +L R GE R+ +Y A + +LP+ I++ +Q + LP +G
Sbjct: 130 TPLEGNAKVACALQQLAERCRLQGEAFRNRAYLLAREAVLELPYSIQTYEQARSLPNVGD 189
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ I + G + LE E R + F +GP AQ+ G + D+
Sbjct: 190 GIAQKIALLAAGGSVPGLE-LELTPDERIVRYFAACHDVGPGRAQQWRALGFESFADVLR 248
Query: 314 EDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 370
L + G+++++D + RIPR EV + +L++ + VI GSY RG
Sbjct: 249 ASPQWRLPWAMLYGMRFYEDWQLRIPRDEVGEHAAVLEQCAPAGMSVVI---AGSYSRGS 305
Query: 371 ASCGDLDVVIMHP---DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDT-- 425
+CGD+DVV+ D + L+ V++L + ++ L S + D V +
Sbjct: 306 TTCGDIDVVLYREGCDDPEVLADDLTALVQRLVSIGYVECPLHLSKRLQPLFDPAVHSLA 365
Query: 426 -------------------YFGLCTYPG-----------------REL-----------R 438
++ PG REL
Sbjct: 366 RGLGVSVSGRLSEKDTLARFYSGVRLPGKAPVPPGAPAIPYVAQDRELFAPHASGSARPC 425
Query: 439 HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 498
R+D L+ + GND N+ LR A ++G L+ GLF + G+
Sbjct: 426 RRLDLLTCKWSERGACLLYFIGNDTFNKALRTRASAQGMTLNQHGLFDKSSGA------- 478
Query: 499 ARTSLKFDTEKEVFDFLGFPWLEP--HERN 526
++ E + + LGFP LEP +RN
Sbjct: 479 ---CVESADEYRIMELLGFPRLEPTDEQRN 505
>gi|323508140|emb|CBQ68011.1| related to DNA polymerase mu [Sporisorium reilianum SRZ2]
Length = 612
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 148/372 (39%), Gaps = 54/372 (14%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---------------- 242
N+ + + N R G+ +Y +AI ++ PF I
Sbjct: 250 NQPLIAELETIRNERRLTGDTYSEMAYMRAISALKAYPFPIPDPVLDPPHVFDAALLAVR 309
Query: 243 -DQVKGLPGIGKSMQDHIQEIVTT------GKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
+V+ L G+GK + I++ + G++ + + +D V ++ E++GIGP
Sbjct: 310 LGEVEKLKGVGKKVFSLIRQFYSRCEAGAGGRIVEAKVIRRDRAVYVMNALTELYGIGPI 369
Query: 296 TAQKLYEKGHRTLDDL--KNEDSLTH-SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 352
A++ Y G R+ D+ + + TH S + ++ D++ I R E + +
Sbjct: 370 GARQAYNAGARSFADVLHRGKSLATHLSAKESVRILGDLRKPIGRDECRAITEDIMTLVR 429
Query: 353 EVLP---EVII-LCGGSYRRGKASCGDLDVVIMH---PDRKSH---------KGFLSKYV 396
VLP EV +CGG YRRGKA DLDV+I H P R H KG ++ V
Sbjct: 430 SVLPHDAEVKYEICGG-YRRGKAHTFDLDVIIGHGEAPSRALHMRLLDEMKRKGLITHIV 488
Query: 397 K-KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGL 455
L D T D + + + R+D P +Y +
Sbjct: 489 NVSTPAPSDLDPDPTPHTAGAVHIDIANIVVLPTPSSAAKPVHRRVDLVFCPLRVYGATV 548
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
+ WTG+ R LRL A+SKG+ GL + ++ E +VFD L
Sbjct: 549 LGWTGSLTFERDLRLWAKSKGFNFSFDGL----------TNLAEECLVETRDESDVFDAL 598
Query: 516 GFPWLEPHERNL 527
G W+ P R
Sbjct: 599 GLEWMPPEWRKC 610
>gi|336390911|dbj|BAK40154.1| DNA polymerase lambda [Aurelia sp. 1 sensu Dawson et al. (2005)]
Length = 345
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N+ I E L+ Y ALG+ R Y KAI + K I S +Q + LP +G+ + +
Sbjct: 176 NEFIIEKLKVLLEEYTALGDKWRVMGYKKAITALSKCKEIIRSTEQARKLPHVGERLAEK 235
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN----- 313
I EI T +L +L++ D +V T+ F ++ G+GP A LY KG R++++L+
Sbjct: 236 IGEIAETRRLRRLDYV--DNRVETLKAFCDIHGVGPVVAADLYAKGFRSIEELRTYSDTP 293
Query: 314 -------EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 357
+ +L+ QR+GLK+ +D + RIPR EV + L+++ + E
Sbjct: 294 ESCGPSAKVTLSRPQRIGLKHVEDFRQRIPREEVSVIAGLVREVCHRFINE 344
>gi|422294312|gb|EKU21612.1| DNA polymerase lambda subunit, partial [Nannochloropsis gaditana
CCMP526]
Length = 281
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-CGGSYRRGKASCGD 375
L +QR+GL+Y+++ + RIPR EV ++E +++A E + P V +L GSYRRG + CGD
Sbjct: 56 LNENQRVGLRYYEEFQERIPRSEVRKIEERVREATEALYPGVFMLTTCGSYRRGASHCGD 115
Query: 376 LDVVIMH-PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
+D+++ +R +GFL + + L++ FL + H + TD D+YFG+C
Sbjct: 116 VDILLAPVSERVQARGFLGRLILHLEKEGFLTD------HLTDATDDKSDSYFGVCRLGD 169
Query: 435 RELRHRIDFKVYPRD------IYAFGLIA----WTGNDVLNRRLRLLAESKGYRLDDTGL 484
L R+D K D ++ G A W+ V L L L +
Sbjct: 170 GYLHRRLDLKWSLTDKSMGPAVWERGTAAPPTPWSFRPVFPSILTRLTRPFRTSLLELSS 229
Query: 485 FPATYGSG---GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
PA + G GK+ + E+E+F LG + P ERN
Sbjct: 230 HPAIFPFGDSVGKKVADIGPRIVCTEEREIFHRLGLAYKRPWERN 274
>gi|50293401|ref|XP_449112.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528425|emb|CAG62082.1| unnamed protein product [Candida glabrata]
Length = 568
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 123/475 (25%), Positives = 185/475 (38%), Gaps = 103/475 (21%)
Query: 123 DGESSHR--KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 180
D ES R K ++ + E ++ + DVE N S + +S ++ T L ++ S
Sbjct: 115 DSESQERDTKNVQFHSAGNEEAGSDDETDVEGNKESTGDMTDVS-DTATPQLQSSPLSKY 173
Query: 181 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 240
D +L N G+L+ Y G+ RS SY A +EK P KI
Sbjct: 174 IKQEEDIDNQVLINA----------LGRLVKKYEVKGDQYRSRSYRLAKQAVEKYPHKIT 223
Query: 241 SADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
S Q + L IG S+ IQ ++ TG L LE DE ++ F E +GIG A+K
Sbjct: 224 SGSQAQRQLSNIGSSIAKKIQLLLDTGTLPGLEDPATDEYESSLGYFSECYGIGVPMAKK 283
Query: 300 LYEKGHRTLDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERL 346
TL N + + RL G Y++D RIPR EV L
Sbjct: 284 WI-----TL----NISTFYRAVRLHPKLFISDWPILYGWTYYEDWSKRIPRDEVTAHFEL 334
Query: 347 LQKAGEEVLPEVIILCGGSYRRG------------KASCGDLDVVIMHPDRKSHKGFLSK 394
+++ V + GSY RG K +C DL+ V + + + +
Sbjct: 335 VKEEVRRVGNGCSVEMQGSYVRGARDTGDVDLMFYKENCDDLEEVTIGMENVAASLYQKG 394
Query: 395 YVKKL-----KEMKFLREDL-----------IFSTHSEEGTDSGVDTYFGL------CTY 432
Y+K K + R D+ I + H+ +D G +FG+ Y
Sbjct: 395 YIKCFLLLTDKLERMFRPDILSRLQKCGIAEISNEHTFRNSDRGKKLFFGVELPGDYPIY 454
Query: 433 P------------------GRELRH---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
P ++ H R+DF I +TGN NR LR+
Sbjct: 455 PFDDKDILQLKPQDKFMSKSKDADHFCRRLDFFCCKWSELGAARIHYTGNTDYNRWLRVR 514
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A GY+L G+F K V + FD E+++F++L P+L P +RN
Sbjct: 515 AMDMGYKLTQHGIF--------KDDVLLES---FD-ERKIFEYLHVPYLNPVDRN 557
>gi|297680550|ref|XP_002818051.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Pongo
abelii]
Length = 457
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 143/339 (42%), Gaps = 46/339 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 369
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
+ S + + ++SH F R IF G G
Sbjct: 329 QHSSWESPTCLA---QQSHMD------------AFERSFCIFRLPQPPGATVGGS----- 368
Query: 430 CTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 487
T P + R+D V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 369 -TRPCPSWKAVRVDLVVAPISQFHFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF-- 425
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+T +E+++F LG +L P +RN
Sbjct: 426 --------DPEQKTFFHAASEEDIFRHLGLEYLPPEQRN 456
>gi|392580109|gb|EIW73236.1| hypothetical protein TREMEDRAFT_25387, partial [Tremella
mesenterica DSM 1558]
Length = 258
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 31/247 (12%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 316
I +I+ G + +LE E E++R F V IG A+ + G RT +DL N
Sbjct: 10 IHDILKYGLVPQLE--ELTEEMRATVAFNRVHAIGNIYAKTFAKNGARTFEDLINSTGDE 67
Query: 317 ----LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
++ +Q+L LKY +++ IPR EV++ + L++ A + P + GSYRRG+ +
Sbjct: 68 YGKKVSKAQKLALKYHHEMEIMIPRQEVDKFDMLIKDALNKADPTIKYEIMGSYRRGEET 127
Query: 373 CGDLDVVIMH-------PDRKSHKG------FLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
D+D+V+ H PD K KG + + + + D +F+T
Sbjct: 128 SSDIDMVVWHDSLKRRDPDAKVRKGNPAPDSIMGRVLNAMFSAGLFSSDKMFAT------ 181
Query: 420 DSGVDTYFGLCTYPG--RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
G +GL PG + L ++D ++ P + + L+ TG++ L R LR AE K
Sbjct: 182 --GEKKVWGLSRLPGDPKALHRQVDVRLCPTESLPYMLLGNTGDNDLMRFLRYKAEEKDL 239
Query: 478 RLDDTGL 484
L++ G+
Sbjct: 240 LLNEYGM 246
>gi|281351517|gb|EFB27101.1| hypothetical protein PANDA_006859 [Ailuropoda melanoleuca]
Length = 208
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 38/223 (17%)
Query: 326 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR-------------GKAS 372
+YF+D + RIPR E+ QM+ ++ ++V E I GS+ G S
Sbjct: 1 RYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFXXVAVSEEVTYFLILGAES 60
Query: 373 CGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFG 428
GD+DV++ HP S L + V++L+++ F+ + L G + G
Sbjct: 61 SGDMDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTL----------SKGDTKFMG 110
Query: 429 LCTYPGR----ELRHR-IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
+C P + E HR ID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +++
Sbjct: 111 VCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYT 170
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ P G GV A L D+EK++FD++ + + EP +R+
Sbjct: 171 IRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 207
>gi|299740693|ref|XP_001833920.2| DNA polymerase lambda [Coprinopsis cinerea okayama7#130]
gi|298404368|gb|EAU87950.2| DNA polymerase lambda [Coprinopsis cinerea okayama7#130]
Length = 1047
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 104/238 (43%), Gaps = 53/238 (22%)
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
K ++ I EI+ TGKL ++E +E+ V +LF ++G+G +TA K Y G RTLDD++
Sbjct: 628 KQVKFAIVEILETGKLRRIE-YERTGDVVAAALFQGIYGVGRSTAYKWYNAGCRTLDDIR 686
Query: 313 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
L+ Q +GLKY+DDI +R+PR E + + +++
Sbjct: 687 QGKGGVKLSAVQEIGLKYYDDINSRMPREEAKAIYDIIKPI------------------- 727
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
G L + +++L + L EDL E D Y GL
Sbjct: 728 --------------------GVLGRLIQELHAVGVLTEDLALP----EEIDDLEGVYRGL 763
Query: 430 CTYPG--RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
C P R RIDF P LI +T NR +RL A GY L+ GLF
Sbjct: 764 CRLPNVPNSKRRRIDFLTVPYHSRGAALIYYT----FNRAMRLKANVMGYSLNQRGLF 817
>gi|71004160|ref|XP_756746.1| hypothetical protein UM00599.1 [Ustilago maydis 521]
gi|46096015|gb|EAK81248.1| hypothetical protein UM00599.1 [Ustilago maydis 521]
Length = 616
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 175/423 (41%), Gaps = 66/423 (15%)
Query: 155 LSEAPNSPMSSESLTNTLSTASASPDF--SSHHITDPSLLYNPPDLNKN-ITEIFGKLIN 211
LS +P +S S + + + P + + + PS L++P N+ ITE+ +LI
Sbjct: 208 LSSSPTPTTASSSYYDAIYPPAPCPRWQNTRYACRRPSPLHSP---NQALITEL--ELIR 262
Query: 212 IYRALGEDRRS-FSYYKAIPVIEKLPFKIES-----------------ADQVKGLPGIGK 253
R L D S +Y +AI ++ PF I +V+ L G+GK
Sbjct: 263 TERRLTGDTYSEMAYMRAISALKAFPFPIPDRILDPPEVFDPALLELRLSEVEKLKGVGK 322
Query: 254 SMQDHIQEIVTTG-----KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 308
+ I++ + ++ + + +D V ++ F E++GIGP A++ Y G R+
Sbjct: 323 KVFSLIKQFYASENKSGERIVEAKVIARDPAVYIMNAFTELYGIGPIGAREAYNSGARSF 382
Query: 309 DDL--KNEDSLTH-SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII----L 361
D+ + + TH S + ++ D++ I R E + + +L + + +
Sbjct: 383 SDVLHRGKSLATHLSVQESVRILADLRKPIGREECRSITAHIMALVRSMLADDVEVKYEI 442
Query: 362 CGGSYRRGKASCGDLDVVIMH---PDRKSH---------KGFLSKYVK-KLKEMKFLRED 408
CGG YRRGK S D+D++I H P R H KG ++ V +L D
Sbjct: 443 CGG-YRRGKESTYDVDIIIGHSEPPSRALHMRLLNEMKRKGLITHLVNVSTPASSYLDPD 501
Query: 409 L-IFSTHSEEGTDSGVDTYFGLCTYPGR---ELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
I H+ + L R + R+D P +Y ++ WTG+
Sbjct: 502 TTIHDKHTPPPVHIDIANIVVLPPLSDRTHLAMHRRVDLVFCPLRVYGATVLGWTGSMTF 561
Query: 465 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
R LRL A+SKG+ GL + + + EK VFD L ++ P
Sbjct: 562 ERDLRLWAKSKGFNFSFDGL----------TNLADESLVDTTDEKAVFDALDLQYMPPEW 611
Query: 525 RNL 527
RN
Sbjct: 612 RNC 614
>gi|302654102|ref|XP_003018863.1| terminal deoxynucleotidyl transferase, putative [Trichophyton
verrucosum HKI 0517]
gi|291182544|gb|EFE38218.1| terminal deoxynucleotidyl transferase, putative [Trichophyton
verrucosum HKI 0517]
Length = 682
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/414 (22%), Positives = 183/414 (44%), Gaps = 47/414 (11%)
Query: 36 LQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQSVIRYQWLEDSLRLGEKVSEDLY 95
L++ + L G T+ E + + +D ++ VIR W+ +SL+ E + + +
Sbjct: 74 LELRSKGLWTEGITIAEAMDEPAQKRRRLDDNKNIR--VIRLSWVHESLKAKEPLPFEPF 131
Query: 96 RIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNAL 155
+ EG I + ++ ++++ + ++ ++GD ++++
Sbjct: 132 TVY---EGRKIPKPPTASLEKALSSTTSPDRCAAQETALYQSPGSSILERARGDTPSSSM 188
Query: 156 SEAPNSPMSS-ESLTNTLSTASASPDF---SSHHITDPSLLYNPPDLNKNI--------- 202
P+SP ++ + + S P S+ + + + +PP+ +N
Sbjct: 189 RFIPSSPSRRVKATSGSPSVIKQRPKLYRASTSDFEEEASIPDPPEWVRNKVVYSCCRST 248
Query: 203 ------TEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGK 253
E G+L+ I R L D +Y +I + P+K++S ++V LPG
Sbjct: 249 PLHSPNAEFIGQLLKIKKIRELTLDEVGVRAYSTSIASLSAYPYKLKSPEEVLSLPGC-- 306
Query: 254 SMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHR 306
++ I + T K SK LE D ++ I+ F +WG+G +A+ Y +K R
Sbjct: 307 --ENRIANLFTEWKHSKDGILESTLPLTTDPALKVINSFHNIWGVGAKSARDFYYQKQWR 364
Query: 307 TLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE------- 357
LDD+ + D+L+ Q++G+KY+++ T IP+ E + + + V P+
Sbjct: 365 DLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIPKEETVSIANTILHHAKLVRPDSDFDGEG 424
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
V I+ GSYRRGK GD+DV++ H D + + V L++ ++ L
Sbjct: 425 VEIIIVGSYRRGKEESGDVDVILTHRDERVTSNLVFDVVASLEQEGWITHTLAL 478
>gi|225851436|ref|YP_002731670.1| DNA polymerase beta family [Persephonella marina EX-H1]
gi|225645277|gb|ACO03463.1| DNA polymerase beta family [Persephonella marina EX-H1]
Length = 586
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 164/355 (46%), Gaps = 55/355 (15%)
Query: 192 LYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES---ADQVKGL 248
+YN +N+++ IF K+ IY L + R+ +Y +A +IE LP I + + ++ +
Sbjct: 1 MYN---INRDLANIFKKMAAIYEFLDDRFRAMAYQRAAHIIEDLPEDIRNYIVSGKLYMI 57
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRT 307
GIG S+ I+E V TGK+ K E +K I L ++ G GP T +K++ E G T
Sbjct: 58 RGIGPSIASKIEEYVKTGKIQKFEELKKQVPEDFIELI-DLPGFGPKTLKKIHDELGIST 116
Query: 308 LDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 354
++L ++L GL+ ++ K RI E Q+ L++ +
Sbjct: 117 KEELVKALKDGRVEKLEGFGPKKVENMLKGLQMYEISKRRIILWEALQISEYLKEKLKSG 176
Query: 355 LPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
L E+ I GS RR K + GD+D+++ D KY K+ + F T
Sbjct: 177 LKEIKKIEVAGSVRRRKETIGDIDILVTAED---------KYRSKIMD---------FFT 218
Query: 414 HSEEGTD---SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
EE ++ G + + G+E ++D +++ D + L +TG+ N LR
Sbjct: 219 SIEEVSEVLVKGPKKSSVIMKFEGKE--RQVDLRIFNDDEWGAALQYFTGSKQHNVHLRE 276
Query: 471 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A+ KG ++++ G+F A + + +TE+ V+ +G W+ P R
Sbjct: 277 IAKEKGLKINEYGVFDA----------KTDKKIAGETEESVYQSVGLKWIPPELR 321
>gi|315050470|ref|XP_003174609.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
gi|311339924|gb|EFQ99126.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
Length = 680
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 169/379 (44%), Gaps = 54/379 (14%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
V++ W+ +S++ E + + + + EG I + + +T+S GE + R+
Sbjct: 111 VLKLNWIHESMKAKEPLPFEQFTVY---EGLKIPKP--PNLSTSPSTASLGERTPREAAL 165
Query: 134 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLS---TASASPDF---SSHHIT 187
+ + +KGD ++ P+SP S + TLS T P S+ +
Sbjct: 166 YQSPGRSILE-RAKGDTVSSPKQFFPSSP--SRRMKATLSSTPTLKQRPKLYRASTSDLE 222
Query: 188 DPSLLYNPPD------------------LNKNITEIFGKLINIYRALGEDRRSFSYYKAI 229
+ + L +PP+ LN + K+ I ++ +Y +I
Sbjct: 223 EEASLPDPPEWVRTKVVYSCCRSTPLHPLNAQFIDQLLKIKKIRELTLDEVGVRAYSTSI 282
Query: 230 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK------DEKVRTI 283
+ P+K++S ++V LPG ++ I + T K SK E D +R I
Sbjct: 283 ASLAAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGTIESTLPLTTDPALRVI 338
Query: 284 SLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEV 340
LF +WG+G +A+ Y ++ R LDD+ + D+L+ Q++G+KY+++ T +PR E
Sbjct: 339 HLFYNIWGVGAKSARDFYYQRQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGVPREET 398
Query: 341 EQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 392
E + + + + + V P+ I+ GG YRRGK GD+DV++ H D + +
Sbjct: 399 ESIAKTILRHAKLVRPDADFDGKGVECIIVGG-YRRGKEESGDVDVILTHQDERVTSNLV 457
Query: 393 SKYVKKLKEMKFLREDLIF 411
V L++ ++ L
Sbjct: 458 FDVVASLEQEGWIMHTLAL 476
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGS 491
P L R+D V P ++ W+G+ R LR A+ ++ D +G+ + GS
Sbjct: 584 PNPNLHRRVDIIVSPFRTIGCAVLGWSGDTTFERDLRRYAKKVHNWKFDSSGVR-SREGS 642
Query: 492 GGKQ-GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GG+ + ++ + EK V + LG W P ER
Sbjct: 643 GGRVIDLESKGKTWEEREKLVMEGLGVGWRPPTER 677
>gi|410730677|ref|XP_003980159.1| hypothetical protein NDAI_0G05000 [Naumovozyma dairenensis CBS 421]
gi|401780336|emb|CCK73483.1| hypothetical protein NDAI_0G05000 [Naumovozyma dairenensis CBS 421]
Length = 570
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 149/379 (39%), Gaps = 72/379 (18%)
Query: 206 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG-LPGIGKSMQDHIQEIVT 264
G L Y+ G+ R+ Y A IE+ PFKIES Q + L IG S+ IQ I+
Sbjct: 195 MGTLAKKYKLKGDQFRARGYRLARASIEECPFKIESGAQAQQQLANIGPSIAKKIQLILN 254
Query: 265 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQ- 321
G L LE E T+ F G+G TA++ + +L D+ K D LT
Sbjct: 255 VGSLPGLEETVNLET--TLDYFSNCHGVGAYTAKRWHLFKLNSLTDVVKKFPDELTKDWP 312
Query: 322 -RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 380
LG Y++D RI R E E+ ++++ ++ + GSY RG +CGD+D++
Sbjct: 313 ILLGWSYYEDWSKRIRRKECEEHLAIVKRKLAKIDSNFQVELQGSYARGAETCGDIDLMF 372
Query: 381 MHP--DRKSHKGF-LSKYVKKLKEMKFLR-----------------------------ED 408
P D G+ L + +L E KF+ D
Sbjct: 373 YKPGCDDTREIGYTLERLALELYEDKFVECFLQLTPTLEKIFRNVLKERFKKCGLKYPSD 432
Query: 409 LIFSTHSE-----EGTD-----------------SGVDTYFGLCTYPGRELRHRIDFKVY 446
IF+T + GT D Y + R+DF
Sbjct: 433 AIFATSNNIKKFYLGTRLPRPDYLIKDDLVGLSLQECDRYMSINKGKNANPCRRLDFFCC 492
Query: 447 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 506
+ W G+ NR LR+LA KG++L GLF +G + FD
Sbjct: 493 KWSELGAARMQWIGSAEFNRWLRILASKKGFKLSQHGLFT-------NEGQLLES---FD 542
Query: 507 TEKEVFDFLGFPWLEPHER 525
EK +F LG +LEP +R
Sbjct: 543 -EKNMFKLLGVDYLEPTQR 560
>gi|50303085|ref|XP_451480.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640611|emb|CAH03068.1| KLLA0A11033p [Kluyveromyces lactis]
Length = 506
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 102/427 (23%), Positives = 182/427 (42%), Gaps = 69/427 (16%)
Query: 150 VETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKL 209
VET+ S+ N+ + + S + D + H +D +L+ + N + ++ L
Sbjct: 100 VETD--SQESNTGVPDTHQVTSPSETHDTADTNVSHSSDANLIMPMNNPNYKLIKVLKSL 157
Query: 210 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESA-DQVKGLPGIGKSMQDHIQEIVTTGKL 268
Y+ + R Y K I +++ + KIES D ++ G+ K + I ++ G+
Sbjct: 158 EKRYKLQNDTFRYLGYMKMIKILQNVRVKIESEEDAIEN--GLSKGLSKKIPFLLKLGES 215
Query: 269 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 328
+ D +T+ F E GIG +++ G+ T +DL + +Q GL ++
Sbjct: 216 G--SELKMDTSEQTLLYFQECHGIGAFKSKQYVNMGYSTFEDLI--PYMNWTQLTGLAFY 271
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+D + IPR E + E +++KA EV + + GSYRRG+ GD+D+V+ P +
Sbjct: 272 EDWQLSIPREETMKHEAIIRKAMNEVNENLCMEITGSYRRGQPRSGDIDIVVHMPGQNDL 331
Query: 389 KGF---LSKYVKKLKEMKF------LREDL----------IFSTHSE----EGTDSGVDT 425
L K + KL E + L E L +FS ++ + D V
Sbjct: 332 NYISRELEKVIIKLTETGYIICPLNLNETLKSLFQPWFHKLFSHFNKPFDVKAYDEPVHK 391
Query: 426 YFG----------------LCTYPGRELRHRIDFKVYPRDIYAF-----GL----IAWTG 460
++ T G + ++++D R + GL + +TG
Sbjct: 392 FYCGAAVTKYEPDRIKDADALTLKGNDKKYKMDIGKTCRRVDFLLAEYQGLGATNVYFTG 451
Query: 461 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 520
N+ N++ R +A+ KGY L + G++ K G + E E+ D +G L
Sbjct: 452 NNNFNKKCRTIAKQKGYVLSNDGIY--------KDGQLIPVA----DEYEILDMIGVDKL 499
Query: 521 EPHERNL 527
+P ERNL
Sbjct: 500 KPTERNL 506
>gi|380487421|emb|CCF38050.1| hypothetical protein CH063_09247 [Colletotrichum higginsianum]
Length = 607
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 137/337 (40%), Gaps = 77/337 (22%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y +I + P+ I + +V LPG G + + E +G+L +++ + D ++ +
Sbjct: 264 AYSTSIATLSAYPYAIATPQEVARLPGCGVKVAELWHEWKESGRLCEVDEAQADPRLSVV 323
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 343
F ++WG+G TA+ Y + D + L H++ + +
Sbjct: 324 KKFYDIWGVGDITARDFYNRVESIADTI-----LVHARNINPGF---------------- 362
Query: 344 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 403
E++I+ G YRRGK GD+DVVI H D + F++K V L++ +
Sbjct: 363 -------------ELVIV--GGYRRGKQGSGDVDVVISHRDESATLHFVNKLVVSLEKSR 407
Query: 404 FLREDLIFSTHSEE---------GTDS---GVDTY-FGLCTYPGRELRHRIDFKVYPRD- 449
+ L S H+ E G +S G DT L + E+ K YP++
Sbjct: 408 HITHTLTLSNHNSERGQRPVXWKGNESKGCGFDTLDKALVVWQELEIE---SHKRYPKNE 464
Query: 450 ---------------IYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGS-- 491
++ W+G+ R L R + K ++ D +G+ GS
Sbjct: 465 REAAPAGGHHHQPWKTVGCAVLGWSGDTTFQRDLRRYCKKQKSFKFDSSGIRSRVDGSWI 524
Query: 492 ---GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GGK G + EK VF+ LG W+ P +R
Sbjct: 525 DLEGGKLG---KAPDMLTAEKRVFEGLGLEWVRPEDR 558
>gi|317157314|ref|XP_001826392.2| hypothetical protein AOR_1_1366054 [Aspergillus oryzae RIB40]
Length = 1196
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 19/248 (7%)
Query: 178 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 234
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 235 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 292
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSENGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 293 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 350 AGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
V P+ I+ GG YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGG-YRRGKEASGDVDLVLYHRDESVTKNLVVDIVGSLES 506
Query: 402 MKFLREDL 409
++ L
Sbjct: 507 EGWITHTL 514
>gi|402863620|ref|XP_003896105.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Papio
anubis]
Length = 457
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 139/339 (41%), Gaps = 46/339 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N +++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLELGVCKEVERVRCSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 369
T Q+ + ++ R P G + LP+ +IL
Sbjct: 273 TQQQKAAPPGSEHPSPAVRCRCPAAGSGGSCGAGPAWGHRHADRRLPQGLIL-------- 324
Query: 370 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGL 429
H + S ++ ++ F R IF G G T
Sbjct: 325 -----------YHQHQHSRWESPTRLAQQSHMDTFERSFCIFRLPQPPGAAVGGSTR--- 370
Query: 430 CTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 487
P + R+D V P + F L+ WTG+ + LR + + KG L+ GLF
Sbjct: 371 ---PCASWKAVRVDLVVAPISQFPFALLGWTGSKLFQWELRRFSRKEKGLWLNSHGLF-- 425
Query: 488 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+T +E+++F LG +L P +RN
Sbjct: 426 --------DPEQKTFFHVTSEEDIFRHLGLEYLPPEQRN 456
>gi|258574165|ref|XP_002541264.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901530|gb|EEP75931.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 739
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 16/202 (7%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 345 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGSLEAANQLDTDPVYS 404
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
T++LF +WGIG +A+ Y + R LDD+ + DSL+ Q++G+KY+D+ IPR
Sbjct: 405 TLNLFYNIWGIGAKSARDFYYHRQWRDLDDVVEQGWDSLSRVQQIGVKYYDEFMEGIPRT 464
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
EVE + +++ + V P E II+ G YRRGK GD+D+++ H D
Sbjct: 465 EVEYIAKVVLEHARRVRPGSDYDGKGIECIIV--GGYRRGKERSGDVDMILSHRDEAVTH 522
Query: 390 GFLSKYVKKLKEMKFLREDLIF 411
+ V L++ ++ L
Sbjct: 523 NLVYDVVASLEQEGWITHTLAL 544
>gi|194374793|dbj|BAG62511.1| unnamed protein product [Homo sapiens]
Length = 232
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 307
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 25 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 82
Query: 308 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 354
L+D++++ SLT Q +GLK++ D R+PR E ++E+ + + V
Sbjct: 83 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVSRCPRAV 129
>gi|91201380|emb|CAJ74440.1| strongly similar to DNA polymerase beta family [Candidatus Kuenenia
stuttgartiensis]
Length = 578
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 63/350 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 254
N + +FGK+ ++ GE+ R SY KA VIE L IE+ D++ +PGIGK
Sbjct: 3 NHEVALLFGKIADVLELKGENTFRINSYRKAARVIEDLTEDIEALARDDKLTNIPGIGKG 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 313
D I E +TTGK+SK E K T++L ++ G+GP T L E G L D++N
Sbjct: 63 TADKIIEYITTGKMSKYEEVAKGISEETVALM-QIPGLGPKTVAMLNKELGIVNLVDIEN 121
Query: 314 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQ-----------MERLLQKAGEEVLPEVI 359
+ L +G K ++I I ++ Q ++R++++ + P+V
Sbjct: 122 AIRDGKLKGLFGIGEKKIENIVKGIELYKTSQQRISIGMAYPIVKRIIERLKQN--PKVK 179
Query: 360 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
I GS RR K + GD+D++ D ++ +K M + + I ++ + +G
Sbjct: 180 EIQAAGSLRRMKETVGDIDILATGNDG-------AEIIKSFVTMPEVTQ--ILASGTTKG 230
Query: 419 T---DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
+ + GV D +V + Y L +TG+ N LR LA+ K
Sbjct: 231 SVRLEEGVQA----------------DLRVVNEEEYGAALQYFTGSKDHNVHLRELAKKK 274
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GY++ + G+F GG+ E +++ LG W+ P R
Sbjct: 275 GYKISEYGIFEGEKKLGGRH------------ESDIYKILGMDWIPPELR 312
>gi|221039776|dbj|BAH11651.1| unnamed protein product [Homo sapiens]
Length = 181
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 25/194 (12%)
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVK 397
QM+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V+
Sbjct: 3 QMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVE 62
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR----ELRHR-IDFKVYPRDIYA 452
+L+++ F+ + L G + G+C P + E HR ID ++ P+D Y
Sbjct: 63 QLQKVHFITDTL----------SKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYY 112
Query: 453 FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVF 512
G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+EK++F
Sbjct: 113 CGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIF 166
Query: 513 DFLGFPWLEPHERN 526
D++ + + EP +R+
Sbjct: 167 DYIQWKYREPKDRS 180
>gi|167537826|ref|XP_001750580.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770876|gb|EDQ84553.1| predicted protein [Monosiga brevicollis MX1]
Length = 499
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 133/334 (39%), Gaps = 67/334 (20%)
Query: 210 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 269
++I AL ED + Y I + + KI + D ++ LP IG I++I+ TG L
Sbjct: 215 VHILSAL-EDMKELLYDPRIDKLRGVRTKITTTDGLEDLPFIGAKTIRKIEDILETGTLE 273
Query: 270 KLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFD 329
+LEH EK++ LF
Sbjct: 274 RLEH-ANTEKIQAQRLFA------------------------------------------ 290
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
K RIPR EV+ M L+ ++ + ++L GSY RG+ +CGD+D ++ H D +
Sbjct: 291 --KERIPRSEVDDMVTLVTSTLRDIDADAVVLPSGSYTRGRQTCGDVDFLLTHGDPRRVP 348
Query: 390 GFLSKYVKKLKEMKFLREDLI-------------FSTHSEEGTDSGVDTYFGLCTYPGRE 436
L+ + LK FL DL E D +D Y G+ G
Sbjct: 349 HLLAPLLHALKATNFLTHDLTTVDAASTGTTDYGGDDDDAEARDY-IDKYMGVARLRG-G 406
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 496
L R+DF V P +A + + G+ NR +RLLA + L+ L A ++
Sbjct: 407 LHRRVDFIVLPPHEWACAALYFAGSGTFNRSMRLLARKANWSLNQRHLMVAV--KRDRED 464
Query: 497 VRARTSLKFDT----EKEVFDFLGFPWLEPHERN 526
+T F E ++F +LG + PH RN
Sbjct: 465 ANTKTFAGFVVPCLDEYDIFAWLGIEYQPPHLRN 498
>gi|302509388|ref|XP_003016654.1| terminal deoxynucleotidyl transferase, putative [Arthroderma
benhamiae CBS 112371]
gi|291180224|gb|EFE36009.1| terminal deoxynucleotidyl transferase, putative [Arthroderma
benhamiae CBS 112371]
Length = 683
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 167/380 (43%), Gaps = 53/380 (13%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQG--NGNTSSDGESSHRKK 131
VIR W+ +SL+ E + + + + EG I S ++ + TS D ++
Sbjct: 111 VIRLSWIHESLKAKEPLPFEQFTVY---EGRKIPKPPTSSLEKVLSSTTSPDRCAAQETA 167
Query: 132 IKSSTEDVEHFQAESKGDVETNALSEAPNSPMSS-ESLTNTLSTASASPDF---SSHHIT 187
+ S ++GD ++++ P+SP ++++ + S P S+
Sbjct: 168 LNQSPGS--SILERARGDTPSSSMRFIPSSPSRRMKAMSGSPSVIKQRPKLYRASTSDFE 225
Query: 188 DPSLLYNPPDLNKNIT---------------EIFGKLINI--YRALGEDRRSF-SYYKAI 229
+ + + +PP+ +N E +L+ I R L D +Y +I
Sbjct: 226 EEASIPDPPEWVRNKVVYSCCRSTPLHSPNEEFIDQLLKIKKIRELTLDEVGVRAYSTSI 285
Query: 230 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTI 283
+ P+K++S ++V LPG ++ I + T K SK LE D +R I
Sbjct: 286 ASLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALRVI 341
Query: 284 SLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEV 340
+ F +WG+G A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 342 NSFHNIWGVGAKFARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIPKEET 401
Query: 341 EQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 391
+ + + V P E II+ G YRRGK GD+DV++ H D +
Sbjct: 402 VSIANTILHHAKLVRPDSDFDGEGVECIIV--GGYRRGKEESGDVDVILTHRDERVTSNL 459
Query: 392 LSKYVKKLKEMKFLREDLIF 411
+ V L++ ++ L
Sbjct: 460 VFDVVASLEQEGWITHTLAL 479
>gi|212213026|ref|YP_002303962.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
gi|212011436|gb|ACJ18817.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
Length = 594
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 160/357 (44%), Gaps = 64/357 (17%)
Query: 193 YNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKG 247
Y P N I + KL ++ GE+ R +Y A +I+KLP + + + +
Sbjct: 20 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDKLPKSVAEMLKEGEDLTE 79
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 306
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 80 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 138
Query: 307 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 349
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 139 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 198
Query: 350 AGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
A P++ + GS+RR K + GDLD++ + + + +K+ + L+ +
Sbjct: 199 A-----PDIKKVDIAGSFRRRKETVGDLDILAVATKGRKVVDYFTKFEEVLRVISH---- 249
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+T S SG+ ++D +V P Y + +TG+ N +
Sbjct: 250 --GTTRSTVFLRSGI----------------QVDLRVVPEKSYGAAMHYFTGSKSHNITI 291
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
R +A + ++++ G++ GK TEKE + F P++EP R
Sbjct: 292 RKMALKRNLKVNEYGVYKGNRQVAGK------------TEKEFYAFFNMPYIEPELR 336
>gi|392863728|gb|EAS35504.2| high-affinity nickel transporter [Coccidioides immitis RS]
Length = 731
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ IPR
Sbjct: 407 TLNMFYNIWGVGTKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGIPRA 466
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
EVE + R++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISRVVLEHARRARPGSDFDEKGIECIIV--GGYRRGKERSGDVDIILSHRDEGVTH 524
Query: 390 GFLSKYVKKLKEMKFLREDLIF 411
+ V L+E ++ L
Sbjct: 525 NLVYDVVSSLEEDGWITHTLAL 546
>gi|119192864|ref|XP_001247038.1| hypothetical protein CIMG_00809 [Coccidioides immitis RS]
Length = 737
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ IPR
Sbjct: 407 TLNMFYNIWGVGTKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGIPRA 466
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
EVE + R++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISRVVLEHARRARPGSDFDEKGIECIIV--GGYRRGKERSGDVDIILSHRDEGVTH 524
Query: 390 GFLSKYVKKLKEMKFLREDLIF 411
+ V L+E ++ L
Sbjct: 525 NLVYDVVSSLEEDGWITHTLAL 546
>gi|304314701|ref|YP_003849848.1| DNA polymerase IV [Methanothermobacter marburgensis str. Marburg]
gi|302588160|gb|ADL58535.1| predicted DNA polymerase IV [Methanothermobacter marburgensis str.
Marburg]
Length = 557
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 159/358 (44%), Gaps = 64/358 (17%)
Query: 192 LYNPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVK 246
++N L KN + I ++ + G++ R+ +Y +A +E L IE + +++
Sbjct: 1 MHNIYALMKNHLVAHILNRVADYMELRGDEFRTKAYRRAARTVEFLGEDIEDVAAQGRLR 60
Query: 247 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH 305
LPGIG+++ I+EI++TG LS LE + V SL V G+GP T + LYE+ G
Sbjct: 61 ELPGIGENIAAKIEEILSTGSLSLLERLAGEYPVDLDSLLS-VEGVGPKTVKLLYEELGI 119
Query: 306 RTLDDLKNEDSLT----------HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 355
+TLDDL+ + + + L+ + ++RI R + + L + E+L
Sbjct: 120 KTLDDLEEQARRHRIRRLRGMGEKKEAMILRNIELARSRISRRPLAYVVPLASRIKSELL 179
Query: 356 P-EVI--ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI-- 410
E + + GS RRG+ + GD+D+++ D + + M + E ++
Sbjct: 180 ELEGVRRVEVAGSIRRGRETVGDIDILVTATDPH-------RVMDHFTSMDLVEEVVVKG 232
Query: 411 ---FSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
+ EG D C D +V+ +++ L+ +TG+ N
Sbjct: 233 PKKSTVRLREGLD---------C-----------DLRVFDDEVFGAALLYFTGSWEFNVE 272
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
LR +A S +L + GLF G+ TE EV + LG ++EP R
Sbjct: 273 LRRIAISSSMKLSEYGLFRGDERVAGR------------TEAEVLEALGLTYIEPELR 318
>gi|408383066|ref|ZP_11180605.1| PHP domain-containing protein [Methanobacterium formicicum DSM
3637]
gi|407814174|gb|EKF84806.1| PHP domain-containing protein [Methanobacterium formicicum DSM
3637]
Length = 566
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 152/351 (43%), Gaps = 66/351 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKSM 255
N + I ++ + G D R+ +Y +A IE L + + +++ LPGIGK +
Sbjct: 3 NHKVASILQQVADYLELDGVDFRTKAYRRAAHTIETLSVDVADMQKQGKLEELPGIGKHI 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 314
+ I+EI+ TG L LE+ K E + +V G+GP + LY E G + LDDL+ E
Sbjct: 63 HEKIEEILETGNLEYLENL-KSEFPLDMDALMQVEGLGPKKIKLLYQELGIKNLDDLEKE 121
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC------------ 362
H +RL + T+ ++ +E + G ++L +V+ L
Sbjct: 122 AKRHHIRRL-----KGMGTKTEAEILQNIEFARKSIGRQLLGDVLPLAIEIKQRISTLDT 176
Query: 363 ------GGSYRRGKASCGDLDV--VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
GS RR K + GD+D+ V HPD + Y F + DL+
Sbjct: 177 VDQVQIAGSIRRRKETVGDIDILTVTQHPDE------VMDY--------FTQMDLVGEVI 222
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+ S V Y G+ D +V+ + ++ +TG+ LN LR +A S
Sbjct: 223 VKGHAKSTVRLYNGMDA----------DIRVFKESDFGSAMVYFTGSRELNIVLRKIALS 272
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
K +L++ G+F ++ VR L TE EVF LG ++ P R
Sbjct: 273 KSMKLNEYGVF--------QEDVR----LAGQTESEVFRALGLDYIPPELR 311
>gi|345806421|ref|XP_003435430.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like, partial [Canis
lupus familiaris]
Length = 645
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 159/401 (39%), Gaps = 53/401 (13%)
Query: 121 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 180
+S E+SH ++ +++T + + D+ S A P+ E + L A+
Sbjct: 11 TSAEEASHWQEHRAATASPQRCSRPALLDISWFTESMAAGQPVPVEC-RHRLEVAAPRKG 69
Query: 181 FSSHHITDPSLLYNPPDL---NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 237
P P L N +++E L G + R S+ +A V++ LP
Sbjct: 70 LPCPARMLPYACQRPTPLTHHNSSLSEALEMLAEAAGFEGSEGRFLSFRRAAAVLKALPS 129
Query: 238 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+ + Q++GLP G+ + +QE++ G ++E E+ +T+ P
Sbjct: 130 PVTALSQLQGLPHFGEHSRRVVQELLEQGVCEEVERVRLSERYQTMK--------APPRE 181
Query: 298 QKLY--EKGH---RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 352
L+ E+G R K ++ S GL+++ D+ T + R + E + +L++ A
Sbjct: 182 SLLWKREEGRWRARAGGAWKVRRAVLSS---GLQHYRDLSTPVQRPDAEALLQLVKAAVA 238
Query: 353 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 412
+LP + G +RRGK D+D+++ HP G L K ++ L++ +++
Sbjct: 239 PILPGATVTLAGGFRRGKLQGHDVDLLLSHPQEGREAGLLPKVMQCLEKQGL----VLYQ 294
Query: 413 THSEEGT---------------------------DSGVDTYFGLCTYPGRELRHRIDFKV 445
H G SGV P R+ R+D
Sbjct: 295 QHHRGGCGHAEPPPRQSHPMDAFERTFCILGLPQPSGVPVGSTQGPCPTRKAV-RVDLVA 353
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLF 485
P F L+ WTG+ R LR + +G L+ GLF
Sbjct: 354 VPISRLPFALLGWTGSKHFQRELRRFCRKERGLWLNSCGLF 394
>gi|161830379|ref|YP_001596420.1| DNA-binding/PHP domain-containing protein [Coxiella burnetii RSA
331]
gi|164686005|ref|ZP_01947535.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
gi|161762246|gb|ABX77888.1| putative DNA-binding/PHP domain protein [Coxiella burnetii RSA 331]
gi|164601535|gb|EAX31846.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
Length = 578
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 160/357 (44%), Gaps = 64/357 (17%)
Query: 193 YNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKG 247
Y P N I + KL ++ GE+ R +Y A +I++LP + + + +
Sbjct: 4 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDELPKSVAEMLKEGEDLTE 63
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 306
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 64 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 122
Query: 307 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 349
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 123 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 182
Query: 350 AGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
A P++ + GS+RR K + GDLD++ + + + +K+ + L+ +
Sbjct: 183 A-----PDIKKVDIAGSFRRRKETVGDLDILAVATKGRKVVDYFTKFEEVLRVISH---- 233
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+T S SG+ ++D +V P Y + +TG+ N +
Sbjct: 234 --GTTRSTVFLRSGI----------------QVDLRVVPEKSYGAAMHYFTGSKSHNITI 275
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
R +A + ++++ G++ GK TEKE + F P++EP R
Sbjct: 276 RKMALKRNLKVNEYGVYKGNRQVAGK------------TEKEFYAFFNMPYIEPELR 320
>gi|145517943|ref|XP_001444849.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412282|emb|CAK77452.1| unnamed protein product [Paramecium tetraurelia]
Length = 434
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N I E KL+ IY R +Y KAI +++ LP+ I+S+D +K +P IG ++
Sbjct: 290 NNEIIEELEKLLKIYTNEKNKGRCIAYRKAIGLLKALPYPIKSSDDLKDMPTIGDKIK-- 347
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 317
K + E EK I VWGIGP TA Y KG RTL+DL KN+ L
Sbjct: 348 --------KEDNRNYLEGQEKNVAIGQLSRVWGIGPTTAATFYFKGIRTLEDLRKNKHLL 399
Query: 318 THSQRLGLKYFDDIKTRIPRHE 339
+Q++GL +D++ RIPR E
Sbjct: 400 NRNQQVGLHLVEDLEQRIPREE 421
>gi|209364119|ref|YP_001424924.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
gi|212218905|ref|YP_002305692.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
gi|215918974|ref|NP_819524.2| DNA polymerase X family/PHP domain-containing protein [Coxiella
burnetii RSA 493]
gi|206583859|gb|AAO90038.2| DNA Polymerase X family [Coxiella burnetii RSA 493]
gi|207082052|gb|ABS78173.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
gi|212013167|gb|ACJ20547.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
Length = 594
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 160/357 (44%), Gaps = 64/357 (17%)
Query: 193 YNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKG 247
Y P N I + KL ++ GE+ R +Y A +I++LP + + + +
Sbjct: 20 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDELPKSVAEMLKEGEDLTE 79
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 306
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 80 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 138
Query: 307 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 349
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 139 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 198
Query: 350 AGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
A P++ + GS+RR K + GDLD++ + + + +K+ + L+ +
Sbjct: 199 A-----PDIKKVDIAGSFRRRKETVGDLDILAVATKGRKVVDYFTKFEEVLRVISH---- 249
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+T S SG+ ++D +V P Y + +TG+ N +
Sbjct: 250 --GTTRSTVFLRSGI----------------QVDLRVVPEKSYGAAMHYFTGSKSHNITI 291
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
R +A + ++++ G++ GK TEKE + F P++EP R
Sbjct: 292 RKMALKRNLKVNEYGVYKGNRQVAGK------------TEKEFYAFFNMPYIEPELR 336
>gi|327303324|ref|XP_003236354.1| high affinity nickel transporter [Trichophyton rubrum CBS 118892]
gi|326461696|gb|EGD87149.1| high affinity nickel transporter [Trichophyton rubrum CBS 118892]
Length = 683
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 51/379 (13%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
VIR W+ +SL+ + + + + + EG I+ + ++ ++++ ++
Sbjct: 111 VIRLSWIHESLKAKKPLPFEQFTVY---EGHKISKPPTASLEKASSSTTFPGRCAAQETA 167
Query: 134 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN----------TLSTASASPDFSS 183
+ ++GD + ++ P+SP T+ L AS S
Sbjct: 168 LNQSPGSSILGRARGDTASPSMKFIPSSPSHRMKATSDSPSVLKQRPKLYRASTSDLEEE 227
Query: 184 HHITDP----------SLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIP 230
I DP S + P L+ N E +L+ I R L D +Y +I
Sbjct: 228 ASIPDPPEWVRNKVVYSCCRSTPLLSPN-AEFIDQLLKIKKIRELTLDEVGVRAYSTSIA 286
Query: 231 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTIS 284
+ P+K++S ++V LPG ++ I + T K SK LE D +R I
Sbjct: 287 SLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALRVIQ 342
Query: 285 LFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVE 341
F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 343 SFHNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDALSRVQQIGVKYYEEFLTGIPKEETV 402
Query: 342 QMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 392
+ + + V P E II+ G YRRGK GD+DV++ H D + +
Sbjct: 403 SIANTILHHAKLVRPDSDFDGEGVECIIV--GGYRRGKEESGDVDVILTHRDERVTSNLV 460
Query: 393 SKYVKKLKEMKFLREDLIF 411
V L++ ++ L
Sbjct: 461 FDVVASLEQEGWITHTLAL 479
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 420 DSGVDTY---FGLCTYP--------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
DS DT FG T P L R+D V P ++ W+G+ R L
Sbjct: 563 DSSRDTLAGEFGTSTAPIPVNPRKANPNLHRRVDIIVSPFRTIGCAVLGWSGDTTFERDL 622
Query: 469 RLLAES-KGYRLDDTGLFPATYGSGGK-QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
R A+ ++ D +G+ + GSGG+ + +R + EK V + LG W P ER
Sbjct: 623 RRYAKKMHNWKFDSSGIR-SREGSGGRIIDLESRGKTWQEREKLVMEGLGVGWRPPTER 680
>gi|337289031|ref|YP_004628503.1| PHP domain-containing protein [Thermodesulfobacterium sp. OPB45]
gi|334902769|gb|AEH23575.1| PHP domain protein [Thermodesulfobacterium geofontis OPF15]
Length = 606
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 153/347 (44%), Gaps = 57/347 (16%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 254
NK + EIF K+ + G++ R +Y KA IE L IE +++ LPGIG
Sbjct: 33 NKEVAEIFNKVAALLEIKGDNPYRIRAYQKAAQTIEALTTDIEELARQGKLEKLPGIGAD 92
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
+ I+EI+ TG LS E +K+ + + F E+ +GP + LYEK G +++L+
Sbjct: 93 LAGKIKEILRTGTLSLYEELKKEIPLVLLD-FLEIPSLGPKKVKVLYEKLGITNIEELEK 151
Query: 314 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 360
+L G+ F + + R P EV + + + + P I
Sbjct: 152 ACKEHKIAKLPGFGWKTEENILKGIALFREKRGRRPLGEVLPLAEEIIETLKRESPVENI 211
Query: 361 LCGGSYRRGKASCGDLDVVI--MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR K + D+D++I + P+ K +KK+ E+ + E + F
Sbjct: 212 AVAGSIRRKKETVKDIDILITSVQPE---------KVMKKVTELPLVEEVIAFGE----- 257
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
T + V G+ ++D +V D + L +TG+ N R+R LA KG +
Sbjct: 258 TKTSVRLRTGI----------QMDVRVVEPDSWGAALAYFTGSKAHNIRVRELALEKGLK 307
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F GK TE+EV+ +G P++ P R
Sbjct: 308 INEYGVFRGEEKIAGK------------TEEEVYASIGLPFIPPELR 342
>gi|385867297|pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 162/352 (46%), Gaps = 63/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 252
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 311 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 357
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 358 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V LCG S RR K + GDLD ++ + ++ +GF+ + ++KE +++
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVR--LPQVKE--------VYAKG 228
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
E T V GL ++D +V P + Y GL TG+D + RLR LA+
Sbjct: 229 KERAT---VFLKNGL----------QVDLRVVPPESYGAGLQYLTGSDAHSIRLRALAQE 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG +L + G+F R + +TE+EV+ LG PW+ P R
Sbjct: 276 KGLKLSEYGVF------------RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|410721408|ref|ZP_11360745.1| DNA polymerase IV (family X) [Methanobacterium sp. Maddingley
MBC34]
gi|410598990|gb|EKQ53550.1| DNA polymerase IV (family X) [Methanobacterium sp. Maddingley
MBC34]
Length = 566
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 152/352 (43%), Gaps = 68/352 (19%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKSM 255
N + I ++ + G D R+ +Y +A +E L I + +++ LPGIGK +
Sbjct: 3 NHKVASILHRVADYLEMDGVDFRTKAYRRAAHTVETLSIDIADIQKQGKLEELPGIGKHI 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 314
I+EI+ TG L LE+ K+E + V G+GP + LY E G + LDDL+ E
Sbjct: 63 HGKIEEILDTGSLEYLENL-KEEFPLDLDALMSVEGLGPKKIKLLYHELGIKNLDDLERE 121
Query: 315 DSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC----------- 362
H +RL G+ + K + +E + G ++L +V+ L
Sbjct: 122 AKRHHIRRLKGMGAKTEAKI------LHNLEFARKGIGRQLLGDVLPLASEIKERISALD 175
Query: 363 -------GGSYRRGKASCGDLDV--VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
GS RR K + GD+D+ V HPD + Y ++ L +D+I
Sbjct: 176 VVDQAEIAGSIRRRKETVGDIDILTVTKHPDE------VMNYFTQMD----LVDDIIVRG 225
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
HS+ S V Y G+ D +V+ + ++ +TG+ LN LR +A
Sbjct: 226 HSK----STVRLYNGMDA----------DIRVFKEADFGSAMVYFTGSRELNIHLRKIAI 271
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
SK +L++ G+F GK+ E +VF LG ++ P R
Sbjct: 272 SKSMKLNEYGVFRGDERLAGKR------------ESDVFRVLGLDYIPPELR 311
>gi|389739400|gb|EIM80593.1| Nucleotidyltransferase [Stereum hirsutum FP-91666 SS1]
Length = 631
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 37/227 (16%)
Query: 323 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 382
LGL+ +D+ +IPR EV ++ R++ +E+ P + G YRRGK D+DVV H
Sbjct: 416 LGLR--EDLSVKIPRDEVREIHRVIMGELDELQPGCVSTIVGGYRRGKEESNDVDVVFTH 473
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFST-HSEEGTDS----GVDTYFGLCTYPGRE- 436
PD + KG + + L + + + S+ H+ + ++ + PG
Sbjct: 474 PDPEKAKGLCKRLMHVLYDKGLVTHVMHLSSFHAHNALRTTHWDSLEKSLTVFVLPGTSP 533
Query: 437 ---------------LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
R R+DF Y ++ WTG+ + R LR A+ +G + D
Sbjct: 534 IYPLPSDHDPSKTRRRRRRVDFIFAQPKTYWTAVVGWTGSMMFERDLRSWAKKRGLKFDS 593
Query: 482 TGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 526
+G+ R R S + TEKEVFD LG PW++P RN
Sbjct: 594 SGI------------TRRRDSKLIYPRTEKEVFDVLGLPWIDPTMRN 628
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
GE+R + SY KA+ V P KI S ++ LP +G + I++ + G +S++
Sbjct: 204 GEERSALSYRKAVSV--AYPTKINSTRDIQRLPFVGSKISSMIEQFIDQGYISEVRTTLH 261
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ +T+++F ++GIGP TA++LY G +L+ L+
Sbjct: 262 SARFKTLTVFNSIYGIGPHTARQLYALGLSSLEQLEQ 298
>gi|326469542|gb|EGD93551.1| high affinity nickel transporter [Trichophyton tonsurans CBS
112818]
gi|326478931|gb|EGE02941.1| high-affinity nickel transporter [Trichophyton equinum CBS 127.97]
Length = 683
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/384 (22%), Positives = 162/384 (42%), Gaps = 61/384 (15%)
Query: 74 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 133
VIR W+ +SL+ E + + + + EG I + ++ +T++ ++
Sbjct: 111 VIRLSWVHESLKAREPLPFEQFTVY---EGRKIPKPPTASLEKTSSTTTSPGRCAAQETA 167
Query: 134 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF----------SS 183
++GD +++ P++P + + S SP S+
Sbjct: 168 LHQSPGSSILERARGDTASSSTQFIPSTP------SRRMKATSGSPSVLKQRPKLYRAST 221
Query: 184 HHITDPSLLYNPPDLNKNI---------------TEIFGKLINI--YRALGEDRRSF-SY 225
+ + + +PP+ +N E +L+ + R L D +Y
Sbjct: 222 SDFEEEASIPDPPEWVRNKVVYSCCRSTPLHSPNAEFIDQLLKVKKIRELTLDEVGVRAY 281
Query: 226 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEK 279
+I + P+K++S ++V LPG ++ I + T K SK LE D
Sbjct: 282 STSIASLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTADPA 337
Query: 280 VRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIP 336
+R I F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP
Sbjct: 338 LRVIHSFYNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIP 397
Query: 337 RHEVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 387
+ E + + + V P E II+ G YRRGK GD+DV++ H D +
Sbjct: 398 KEETVSIANTILHHAKLVRPDSDFDGKGVECIIV--GGYRRGKEESGDVDVILTHRDERV 455
Query: 388 HKGFLSKYVKKLKEMKFLREDLIF 411
+ V L++ ++ L
Sbjct: 456 TSNLVFDVVASLEQEGWITHTLAL 479
>gi|237755558|ref|ZP_04584176.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692291|gb|EEP61281.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 582
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 51/348 (14%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 253
++NK + +IF + +IY L + R+ +Y +A +IE LP I + ++ + GIG
Sbjct: 4 NINKELAKIFNNMSHIYEFLDDKFRALAYARAAQIIEDLPDDIRNYVATGKINDIRGIGS 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
D I E + TGK+ K E +K + L EV G GP T +++YE+ G DL
Sbjct: 64 HTVDKILEYIKTGKIQKYEELKKLIPEDFLDLM-EVPGFGPKTLKRIYEELGINNKKDLI 122
Query: 313 NE-------------DSLTHSQRLGLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEV 358
+ + GL+ ++ K R+ E Q+ E LL K + L E+
Sbjct: 123 EALKDGRVAKLKGFGEKKVQNMLKGLELYEASKNRLILWEALQIGETLLAKLKQ--LKEI 180
Query: 359 I-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
I GS RR K + GD+D+++ D+ K + Y L+++K E
Sbjct: 181 KNIELAGSLRRRKETIGDIDILVSCDDKDRDK--IINYFVNLEDVK-------------E 225
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
G DT + +E +D +V + + GL +TG+ N R +A+ KG
Sbjct: 226 VLAKG-DTRASVII---KEKDREVDLRVLKPEEWGSGLQYFTGSKEHNVHFREIAKQKGL 281
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ + G+F A + L TE+EV++ +G W+ P R
Sbjct: 282 KVSEYGVFDA----------KTEKRLAGATEEEVYEIVGMQWIPPEMR 319
>gi|188997236|ref|YP_001931487.1| PHP domain-containing protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932303|gb|ACD66933.1| PHP domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 582
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 51/348 (14%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 253
++NK + +IF + +IY L + R+ +Y KA ++E LP I + ++ + GIG
Sbjct: 4 NINKELAKIFKNMSHIYEFLDDKFRALAYVKAAQILEDLPDDIRNYIATGKINDIRGIGS 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
D I E + TGK+ K E +K + L EV G GP T +++YE+ G DL
Sbjct: 64 HTFDKILEYIKTGKIQKYEELKKLIPEDFLELM-EVPGFGPKTLKRIYEELGINNKKDLI 122
Query: 313 NEDSLTHSQRLGLKYFDDIKTR-----IPRHEVEQMERLLQKA---GEEVLPEVI----- 359
++L + LK F + K + + +E + LL +A GE +L ++
Sbjct: 123 --EALKDGRVAKLKGFGEKKVQNMLKGLELYEASKNRLLLWEALQIGETLLAKLKQLKEI 180
Query: 360 --ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
I GS RR K + GD+D++I D+ K + Y L+++K ++
Sbjct: 181 KNIELAGSLRRRKETIGDIDILISCDDKDRDK--IINYFVNLEDVK--------EVLAKG 230
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
T + V +E ++D +V + + GL +TG+ N R +A+ KG
Sbjct: 231 DTKASVII---------KEKDRQVDLRVLKPEEWGSGLQYFTGSKEHNVHFREIAKQKGL 281
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ + G+F A + L TE+EV++ +G W+ P R
Sbjct: 282 KVSEYGVFDA----------KTEKRLAGATEEEVYEIVGMQWIPPEMR 319
>gi|386360348|ref|YP_006058593.1| DNA polymerase IV [Thermus thermophilus JL-18]
gi|383509375|gb|AFH38807.1| DNA polymerase IV (family X) [Thermus thermophilus JL-18]
Length = 575
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 160/351 (45%), Gaps = 61/351 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 252
N+ + IF ++ + LG++ R +YY+A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
+ + I E + TGK+ K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 311 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 357
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKEALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LPG 179
Query: 358 V--IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
V LCG S RR K + GDLD ++ S +G + V+ + ++E +F+
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLV-----ASREG--ERVVEGFVRLPQVKE--VFAKGK 229
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
E T V GL ++D +V P + Y GL TG+ + RLR LA+ K
Sbjct: 230 ERAT---VFLKNGL----------QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQEK 276
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G +L + G+F R + +TE+EV+ LG PW+ P R
Sbjct: 277 GLKLSEYGVF------------RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|374849850|dbj|BAL52854.1| DNA Polymerase X family [uncultured gamma proteobacterium]
Length = 574
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 148/347 (42%), Gaps = 56/347 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFK----IESADQVKGLPGIGK 253
N I +F +L + GE+ R +Y+ A I P + + + + LPGIG+
Sbjct: 5 NSEIAGLFDQLAELLDIEGENPFRVRAYHNAARTIRSYPKSLAEMVAAGEDLTELPGIGE 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK 312
++ I+ IV TG+L +LE K + L + G+GP + L Y +TL+DL+
Sbjct: 65 AIAKKIETIVRTGRLPQLEQVLKRTPKSLLELL-RIEGLGPKRVKTLFYLLKIKTLEDLE 123
Query: 313 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI---------- 359
+ L GLK + I + +H +++ +R L+ E V ++
Sbjct: 124 RAARSGRIRELPGFGLKTEELILNHLQKHALQE-KRFLRFEAESVAEAILAHLKGCPGLD 182
Query: 360 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
I GS+RR K + GDLD++ D +FL + + S
Sbjct: 183 RIEVAGSFRRWKETVGDLDILATVRDGGEVMA------------RFLAYEGVEEVLSHGS 230
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
T S V GL ++D +V P + + L +TG+ N LR LA +G +
Sbjct: 231 TRSSVRLKNGL----------QVDLRVVPTESFGAALQYFTGSKAHNIALRTLAVKQGLK 280
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F RA L TE+EV+ LG PW+ P R
Sbjct: 281 INEYGVF------------RAGERLAGATEEEVYASLGLPWIAPELR 315
>gi|238588542|ref|XP_002391755.1| hypothetical protein MPER_08770 [Moniliophthora perniciosa FA553]
gi|215456861|gb|EEB92685.1| hypothetical protein MPER_08770 [Moniliophthora perniciosa FA553]
Length = 173
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 7/148 (4%)
Query: 199 NKNITEIFGKLINIYRALG---EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 255
N+N+ + +L+ ++RA E R +SY +AI + P +I+S + + + G+GK
Sbjct: 26 NQNVVDKLQELLELHRAKPGKEEGWRVYSYTRAIRALRSYPKRIKSLKKAEAIDGVGKKT 85
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 312
I EI+ TG L +L+ +E+ + V + L ++G+G +TA K Y+ G RTL+DL K
Sbjct: 86 ALKIMEIIETGDLKRLK-YERTDMVEVLQLLQGIYGVGQSTAVKWYQNGCRTLEDLRKGK 144
Query: 313 NEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
L+ +Q++GL+Y+D + P EV
Sbjct: 145 GGIKLSRAQKIGLQYYDGVSVTYPFGEV 172
>gi|206901108|ref|YP_002251308.1| DNA polymerase subunit beta [Dictyoglomus thermophilum H-6-12]
gi|206740211|gb|ACI19269.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
Length = 580
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 156/348 (44%), Gaps = 54/348 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIES---ADQVKGLPGIGKS 254
NK + +I ++ + GE++ + Y+ A IE LP IE ++ + GIG+S
Sbjct: 3 NKEVAQILDEIATLLEIKGENKYKIAAYQEAARRIENLPEDIEKLFKQGKLYQIKGIGES 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 313
+ I+E +TTGK++ LE ++ + L ++ GIGP A +LY E G + +D L+
Sbjct: 63 IGQKIKEYLTTGKVTYLEELRREIPPEILELL-KIPGIGPKLAYRLYTELGIKDIDSLEK 121
Query: 314 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPEVI--------- 359
E + RLG K +I I + +Q ER+ + E++
Sbjct: 122 AAREGKIRLLPRLGPKVEQNILEAIKEYREKQNVPERIPLGVALPLTEEIVNYLSQYPFI 181
Query: 360 --ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
I+ GS RR K + GD+D++I D + K + LK + LR L T
Sbjct: 182 ENIVPAGSLRRRKETIGDIDILITTSD-------MDKVNQVLKNLPILRNILAAGT---- 230
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
T + PG + +DF+V + + L +TG+ N +LR LA KG
Sbjct: 231 -------TKTSIIVEPGIQ----VDFRVVDKSSFGAALQYFTGSKQHNIKLRELAIKKGL 279
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F + + + E+EV++ LG ++ P R
Sbjct: 280 KINEYGVF----------RISDNRKIGGEKEEEVYEILGLQYIPPELR 317
>gi|325959164|ref|YP_004290630.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
gi|325330596|gb|ADZ09658.1| PHP domain protein [Methanobacterium sp. AL-21]
Length = 569
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 59/348 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKSM 255
N+ + I ++ ++ D R+ +Y +A +E IE +++ LPGIG +
Sbjct: 3 NQLVASILNQVADLMEMESVDFRTKAYRRAAHTVEIQSEAIEDIRKQGKLQDLPGIGGKI 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 314
I+EI+ TG L LE+ +K+ V L V G+GP ++LY E G ++LDDL+ +
Sbjct: 63 AGKIEEIIDTGSLKYLENLKKEFPVNYDELM-TVEGLGPKGIKQLYQELGVKSLDDLEKQ 121
Query: 315 DSLTHSQRL---GLKYFDDIKTRIPRHE--------------VEQMERLLQKAGEEVLPE 357
H +RL G K +I + + +++ LL+ GE+ +
Sbjct: 122 AKNHHIRRLKGMGEKTERNILVNLGFAKKSGGRSLIGDILPVATKIKDLLR--GEDYVDR 179
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
V I GS RR K + GD+DV++ P F +K + +D++ S ++
Sbjct: 180 VEI--AGSIRRMKETVGDIDVLVTTPKPLEVMDFFTKM--------DMVDDVVVSGPTK- 228
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
T +E +D + + + + L+ +TG+ N LR LA S GY
Sbjct: 229 ------------STVRLKETGMDVDIRTFSDESFGSALMYFTGSKETNVELRKLAISLGY 276
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+L++ G+F G TEKEVF+ LG ++EP R
Sbjct: 277 KLNEYGVFDGDELVAGT------------TEKEVFNSLGMDYIEPELR 312
>gi|407832611|gb|EKF98510.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 629
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 156/381 (40%), Gaps = 97/381 (25%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 237
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 238 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 298 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 316
Y+K G +++ +L+ N+D
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGSNCGNSGGAKKGSKKTSAGNDDPVL 277
Query: 317 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 373
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR + +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRQPTS 336
Query: 374 GDLDVVIMHP---------DRKSHKG--------------FLSKYVKKLKEMKFLREDLI 410
GD+DV+I KS KG L+ +V+ LK RE I
Sbjct: 337 GDIDVLITRKMNGKGPVIRRTKSKKGGQHHSDEQVLAPQEVLAAFVEALK-----RERYI 391
Query: 411 FSTHSEEGTD-SGVD-----TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
+T ++ T GV Y T P R+D + + + L+ +TG+
Sbjct: 392 EATLAQGATKFMGVSRLRSYNYNAGATSPKLYPARRLDIRFVEPECFPAALLYFTGSKHF 451
Query: 465 NRRLRLLAESKGYRLDDTGLF 485
N +R A + + L++ GLF
Sbjct: 452 NVVMRAEAIKQNFVLNEYGLF 472
>gi|71666010|ref|XP_819969.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma cruzi strain CL
Brener]
gi|70885293|gb|EAN98118.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 629
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 156/381 (40%), Gaps = 97/381 (25%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 237
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 238 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 298 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 316
Y+K G +++ +L+ +ED
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGGNCGNSGGAKKGSKKTSAGDEDPVL 277
Query: 317 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 373
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR + +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRQPTS 336
Query: 374 GDLDVVIMHP---------DRKSHKG--------------FLSKYVKKLKEMKFLREDLI 410
GD+DV+I KS KG L+ +V+ LK RE I
Sbjct: 337 GDIDVLITRKMNGKGPAIRRTKSKKGGHHHSDEQVLAPQEVLAAFVEALK-----RERYI 391
Query: 411 FSTHSEEGTD-SGVD-----TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
+T ++ T GV Y T P R+D + + + L+ +TG+
Sbjct: 392 EATLAQGATKFMGVSRLRSYNYNAGATSPKLYPARRLDIRFVEPECFPAALLYFTGSKHF 451
Query: 465 NRRLRLLAESKGYRLDDTGLF 485
N +R A + + L++ GLF
Sbjct: 452 NVVMRAEAIKQNFVLNEYGLF 472
>gi|385867296|pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 161/352 (45%), Gaps = 63/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 252
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 311 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 357
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 358 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V LCG S RR K + GDLD ++ + ++ +GF+ + ++KE +++
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVR--LPQVKE--------VYAKG 228
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
E T V GL ++D +V P + Y GL TG+ + RLR LA+
Sbjct: 229 KERAT---VFLKNGL----------QVDLRVVPPESYGAGLQYLTGSAAHSIRLRALAQE 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG +L + G+F R + +TE+EV+ LG PW+ P R
Sbjct: 276 KGLKLSEYGVF------------RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8]
gi|374074063|pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
gi|374074064|pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
gi|374074067|pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
gi|374074068|pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8]
Length = 575
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 161/352 (45%), Gaps = 63/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 252
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 311 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 357
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 358 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V LCG S RR K + GDLD ++ + ++ +GF+ + ++KE +++
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVR--LPQVKE--------VYAKG 228
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
E T V GL ++D +V P + Y GL TG+ + RLR LA+
Sbjct: 229 KERAT---VFLKNGL----------QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQE 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG +L + G+F R + +TE+EV+ LG PW+ P R
Sbjct: 276 KGLKLSEYGVF------------RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|72138850|ref|XP_796033.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like
[Strongylocentrotus purpuratus]
Length = 573
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 110/210 (52%), Gaps = 5/210 (2%)
Query: 221 RSFSYYKAIPVIEKLPFKIESADQVKGLPGI--GKSMQDHIQEIVTTGKLSKLEHFEKDE 278
R+ ++ KA ++ LP +I+ + V+ L I G + I +I+ G +++E ++ +
Sbjct: 188 RALAFRKASAALKALPEEIKKPEDVENLYDIRGGAHCKGVILDILENGYSAEVEGIKRSD 247
Query: 279 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIP 336
+ +SLF ++G G +T+ K + G R+LDD+K +LT SQ G++Y++D+ T +
Sbjct: 248 WYQNMSLFTGIYGCGISTSAKWCQMGLRSLDDVKGSYILNLTRSQLKGIEYYNDLNTPVT 307
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 396
+ E + + + + + P ++ G + RGK D+D +I HP+ KG L +
Sbjct: 308 KEEAKWIHDAVSQEVAAIQPGSTVVMTGGFLRGKDMGHDVDFLISHPEEGKEKGILGTLL 367
Query: 397 KKLKEMKFL-REDLIFSTHSEEGTDSGVDT 425
+ L + L D+ ST ++ +G+D
Sbjct: 368 QALTKKGLLDYTDIQNSTVTKTTVQTGMDA 397
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLR-LLAESKGYRLDDTGLFPATYGSGGKQGVR 498
R+DF + P YAF L+ WTG+ + NR +R + L GLF T
Sbjct: 495 RVDFVIAPAGQYAFALLGWTGSKMFNRSMRDYTNKVMNMNLSSHGLFDKTNN-------- 546
Query: 499 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
SL+ TE+E+F+ L + P ERN
Sbjct: 547 --CSLQAKTEEEIFELLKLDYKPPEERNC 573
>gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
Length = 575
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 63/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 252
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
+ + I E + TGK+ K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 311 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 357
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LPG 179
Query: 358 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V LCG S RR K + GDLD ++ + ++ +GF+ + ++KE +++
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVR--LPQVKE--------VYAKG 228
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
E T V GL ++D +V P + Y GL TG+ + RLR LA+
Sbjct: 229 KERAT---VFLKNGL----------QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQE 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG +L + G+F R + +TE+EV+ LG PW+ P R
Sbjct: 276 KGLKLSEYGVF------------RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|337286473|ref|YP_004625946.1| PHP domain-containing protein [Thermodesulfatator indicus DSM
15286]
gi|335359301|gb|AEH44982.1| PHP domain protein [Thermodesulfatator indicus DSM 15286]
Length = 579
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 152/350 (43%), Gaps = 63/350 (18%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 254
NK + +IF K+ + G++ R +Y +A IE L +E + +++ +PGIGK
Sbjct: 3 NKEVADIFRKIAALLEIKGDNPYRIRAYQRAAQNIEALTVDVEELAAKGKLERIPGIGKD 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
+ I EI+ TG L K E K E + F E+ G GP A+ +YE G +T+++L+
Sbjct: 63 LAQKIIEILETGTLQKYEEL-KQEIPPELLKFLEIPGFGPKKAKIVYETLGIKTIEELEK 121
Query: 314 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEV----EQMERLLQKAGEEVLP 356
RL G+K + R+P V E++ LL+K P
Sbjct: 122 ACLEHRLSRLPGFGPKTEQNILKGIKLLKQKRGRLPIGLVLPWAEEIVALLKKKS----P 177
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK-FLREDLIFSTHS 415
I GS RR + + D+D+++ D LK M F+ +I +
Sbjct: 178 VERIDVAGSIRRRRETVKDIDILVTAKDH-------------LKVMDVFVSLPMIDEVIA 224
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
+ T + V G+ ++D +V + Y L +TG+ N R+R L +
Sbjct: 225 KGETKTSVRLKQGI----------QVDLRVLDPECYGAALAYFTGSKAHNIRIRELGVQR 274
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G ++++ G+F GGK+ E+EVF +G PW+ P R
Sbjct: 275 GLKINEYGIFRGQERIGGKE------------EEEVFAAVGLPWIPPELR 312
>gi|393237285|gb|EJD44828.1| hypothetical protein AURDEDRAFT_124929 [Auricularia delicata
TFB-10046 SS5]
Length = 551
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 138/352 (39%), Gaps = 101/352 (28%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG----------- 247
N+ + E + N + GE+R SY +AI I+ P + + +K
Sbjct: 262 NQRLIEELAVIRNARKLEGEERSELSYSRAIASIKAQPAEFRTIKDIKARLLLVPYLLFP 321
Query: 248 ------LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301
+P +G + + I+E + G++S E E+ R++S V GIGP +A++LY
Sbjct: 322 HLSAQDVPFVGAKISNMIEEFIDHGRISDAEELRASERYRSLSALTTVHGIGPTSARELY 381
Query: 302 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 361
+G R+LD L + G+ D + R+E E+++ + E V+ E ++L
Sbjct: 382 ARGLRSLDAL--------DRFYGVVVPDGYGGWV-RNE-EELDVQDEDGLESVIREALVL 431
Query: 362 ---CGGSYRRGKASCGDLD----VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
R AS LD V+ + PDR + R DLIF+
Sbjct: 432 REELNKKQSRRTASARGLDKSLVVLRLAPDRTAR-----------------RVDLIFA-- 472
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
P + Y ++ WTG+ + R LRL A+
Sbjct: 473 --------------------------------PPEAYWAAVVGWTGSIIFERDLRLAAKD 500
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG + +D+G+ + E++VF G PW+EP RN
Sbjct: 501 KGLKFNDSGI----------------EVIPAKDERDVFAICGLPWIEPVWRN 536
>gi|302677012|ref|XP_003028189.1| hypothetical protein SCHCODRAFT_60166 [Schizophyllum commune H4-8]
gi|300101877|gb|EFI93286.1| hypothetical protein SCHCODRAFT_60166 [Schizophyllum commune H4-8]
Length = 163
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 369 GKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
GK CGD+D++I P D +H G + + +K L+ + EDL E+ D Y
Sbjct: 1 GKKDCGDIDIMITRPTDDGGTHAGAMHELLKYLRRADIITEDLAVP---EDPYDPEC-VY 56
Query: 427 FGLC---TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
GLC PG + R RIDF P LI +TG+D+ NR +R A + GY L+ G
Sbjct: 57 HGLCHLPKTPGAKQR-RIDFLAVPWKSKGAALIYYTGDDIFNRAMRYKAGTMGYSLNQKG 115
Query: 484 LFPATYGSGGKQGVRARTS-------LKFDTEKEVFDFLGFPWLEPHER 525
L+ +G + V RT + +TE+E+F LG PW EP +R
Sbjct: 116 LY-----AGVVRDVHDRTKKLNQGNIIASETEEEIFKILGVPWQEPCQR 159
>gi|119570148|gb|EAW49763.1| polymerase (DNA directed), lambda, isoform CRA_g [Homo sapiens]
Length = 106
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 352
SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQ 96
>gi|410080590|ref|XP_003957875.1| hypothetical protein KAFR_0F01440 [Kazachstania africana CBS 2517]
gi|372464462|emb|CCF58740.1| hypothetical protein KAFR_0F01440 [Kazachstania africana CBS 2517]
Length = 591
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 118/467 (25%), Positives = 175/467 (37%), Gaps = 92/467 (19%)
Query: 122 SDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF 181
S ES I+ S++ + A K V+ N ++ +SE ++N D
Sbjct: 141 SANESQEETDIEGSSDII----AMPKKKVKLNGSEMKVDNLDASEPVSNN--------DT 188
Query: 182 SSHHITDPSLLYNPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI 239
H+TD L P KN + + +L Y G+ R+ SY A IE+ PF I
Sbjct: 189 PGMHVTD---LIASPSRAKNALLLDAMSRLYQKYETKGDKFRAKSYKFAKTSIEQCPFVI 245
Query: 240 ESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
ES Q + L IG S+ IQ I+ G L L + E + F G+GP A+
Sbjct: 246 ESGKQAQEELQTIGPSIAKKIQTILDFGTLPGLT--DTSELETKVDYFKTCHGVGPHRAK 303
Query: 299 KL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 354
+ YE L E S G YF++ RI R E ++++ E V
Sbjct: 304 RWHLLRYESFSDVLRKAPEEMSNDWPILFGWSYFEEWSKRITRKECNVHLEIIKEELERV 363
Query: 355 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS----------------HKGFLSKYVK- 397
P V + GSY RG ++CGD+D++ P+ KGF+ ++
Sbjct: 364 DPSVEVEIQGSYIRGASTCGDIDLLFFKPNCDDMNEIATIFESLACNLFRKGFIQCCLQL 423
Query: 398 ----------KLKE------MKFLREDLIFSTHSEEGTDSGV------------------ 423
K+KE +KFL + S+ + GV
Sbjct: 424 TPALYELQKYKIKERFEKAGLKFLEKGNFASSKYIKTFYFGVKIPISRYICETVENDTPL 483
Query: 424 -----DTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
D + + + G R+DF I WTG NR +R+ A KG+R
Sbjct: 484 SLLPDDKFMAINSGKGENPCRRLDFFSCKWSELGAARIQWTGPTDFNRWIRVYAAQKGFR 543
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L GL K G + FD EK +F+ L + H R
Sbjct: 544 LTQHGL--------SKDGKLIES---FD-EKRIFELLDLEYTPRHLR 578
>gi|303312517|ref|XP_003066270.1| hypothetical protein CPC735_054950 [Coccidioides posadasii C735
delta SOWgp]
gi|240105932|gb|EER24125.1| hypothetical protein CPC735_054950 [Coccidioides posadasii C735
delta SOWgp]
Length = 731
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 16/202 (7%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ I R
Sbjct: 407 TLNMFYNIWGVGAKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGITRA 466
Query: 339 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
EVE + ++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISHVVLEHARRARPDSDYDGKGIECIIV--GGYRRGKERSGDVDIILSHRDEGVTH 524
Query: 390 GFLSKYVKKLKEMKFLREDLIF 411
+ V L+E ++ L
Sbjct: 525 NLVYDVVSSLEEDGWITHTLAL 546
>gi|392585337|gb|EIW74677.1| Nucleotidyltransferase [Coniophora puteana RWD-64-598 SS2]
Length = 526
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/397 (21%), Positives = 145/397 (36%), Gaps = 102/397 (25%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ AI I+ L + IESA Q++ L G+G + + + + K S + ++ I
Sbjct: 17 AFKNAIRAIQSLDYPIESAQQIRSLKGVGSGIVKRVDDYLNQHKASPSSQSKAAARL-II 75
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEV 340
+ +V G+GP A+ LY+ G +L + L +QR L Y + + +PR E
Sbjct: 76 NELQQVPGVGPTMAKSLYDAGCTSLVQMHQPQYSAMLKPAQRACLPYVSHLTSPVPRAES 135
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP----------------- 383
E + +++ + E ++ GSYRRG + D+D+++ HP
Sbjct: 136 EAVVDFVRR---HIPREFEVVVAGSYRRGAPASSDIDILLFHPSITDIPPPPPPSNSAPS 192
Query: 384 --------------------DRKSHKGFLSKYVKKLKEM--KFLREDLIFSTHSEEGTDS 421
D H+ SK KL ++ + R L+ +T S S
Sbjct: 193 SSPTKRKDRQPKPAPPDHSVDPGPHQTSKSKSTVKLNDVLTELTRRGLLVATMS-----S 247
Query: 422 GVDTYFGLCTYPGRELRH------------------------------------RIDFKV 445
G + G+ P H R+D +
Sbjct: 248 GARRWQGIARVPTPSTTHVDSASGKETLYKHKDEDKGENEDEGGKGGRDDSVYRRMDITL 307
Query: 446 YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF--------PATYGSGGKQGV 497
+P L+A TG+ N LR A L+D GL+ S + V
Sbjct: 308 FPARAKGAALVACTGDREFNVDLRARASRLELHLNDMGLWRWGKEATNAGASASESTEDV 367
Query: 498 RARTS-------LKFDTEKEVFDFLGFPWLEPHERNL 527
A + L + E+++ LG W+EP RN
Sbjct: 368 EAESEGSWRWHLLASEDERQILAELGMDWVEPERRNF 404
>gi|47228542|emb|CAG05362.1| unnamed protein product [Tetraodon nigroviridis]
Length = 451
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 143/369 (38%), Gaps = 96/369 (26%)
Query: 218 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
ED R ++ +A V++ LP + ++KGLP +G + ++ I +GK +++E ++
Sbjct: 25 EDGRGIAFRRAEAVLKALPRAVRKLTELKGLPCLG---EHSLRIIKASGKAAEVEATKQS 81
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDIKTRIP 336
E+ + + L ++G+G TA + G L L++ +L +Q+ GL++++D+ +
Sbjct: 82 ERYKALKLLTGIFGVGAKTADRWITMGIYNLQQLQSSGPTLNQAQQAGLEHYEDLNQPVT 141
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYR----------------------------- 367
R E + + ++++ VLP + G +R
Sbjct: 142 RAEADHIGEIVRRVVLCVLPGAQLTLIGGFRRYTSRAALDLINIADHLTAKICTDADGIV 201
Query: 368 ----RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEE 417
RGK + D+D +I HP+ G L K V LK FL + + S
Sbjct: 202 DILNRGKPTGHDVDFLITHPEEGREVGLLPKVVSLLKSQGFLLYQKTTKNSYLESEDRPT 261
Query: 418 GTDSGVDTY------FGLCTYPGREL------------------RH-------------- 439
S +D + F L PG L RH
Sbjct: 262 QPSSNMDRFERCFSIFRLKRNPGTTLVKPDTSPRSSSCTQSQSERHSHQESAEVRGNGSE 321
Query: 440 ---------RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK------GYRLDDTGL 484
R+D V P +AF L+ WTG+ + R LR A + + L DT
Sbjct: 322 SRPKSWRAVRVDLVVSPISQFAFALLGWTGSKLFERELRRWAGHEKAMSLSSHALYDTKQ 381
Query: 485 FPATYGSGG 493
P + GG
Sbjct: 382 LPESSFRGG 390
>gi|217967981|ref|YP_002353487.1| PHP domain-containing protein [Dictyoglomus turgidum DSM 6724]
gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
Length = 580
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 58/350 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIE---SADQVKGLPGIGKS 254
NK + +I ++ + GE++ + Y+ A IE LP IE ++ + GIG+S
Sbjct: 3 NKEVAQILDEIAALLEIKGENKYKIAAYQEAARRIENLPEDIERLFKQGKLYQIKGIGES 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 313
+ I+E +TTGK+S LE K+ + L ++ GIGP A +LY E G + +D L+
Sbjct: 63 IGQKIKEYLTTGKVSYLEELRKEIPPEILELL-KIPGIGPKLAYRLYAELGIKDIDSLEK 121
Query: 314 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPEVI--------- 359
E + RLG K +I I + +Q ER+ + E++
Sbjct: 122 AAKEGKIRVLPRLGPKVEQNILEAIKEYREKQTVPERIPLGVALPLTEEIVNYLSQYPFI 181
Query: 360 --ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
I+ GS RR K + GD+D++I D + + + LK + L+ L
Sbjct: 182 ENIVPAGSLRRRKETIGDIDILITTSD-------MDRVNQVLKNLPILKNIL-------- 226
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
+ T + PG + +DF+V + + L +TG+ N +LR LA KG
Sbjct: 227 ---AAGPTKTSIIVEPGIQ----VDFRVVEKSSFGAALQYFTGSKQHNIKLRELAIKKGL 279
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE--VFDFLGFPWLEPHER 525
++++ G+F R + K EKE +++ LG ++ P R
Sbjct: 280 KINEYGVF------------RISDNKKIGGEKEEDIYEILGLQYIPPELR 317
>gi|407395990|gb|EKF27317.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi
marinkellei]
Length = 627
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 155/381 (40%), Gaps = 97/381 (25%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 237
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALLERYKAQSYQIAVDNLKRDDFIFLHLPPNILPPGVDDAK 157
Query: 238 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 298 QKLYEK-GHRTLDDLKN--------------------------------------EDS-- 316
Y+K G +++ +L+ +DS
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHETEKGTGDGDKDGSKCGNSGGAKKGSKKNSAGGDDSVL 277
Query: 317 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 373
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRLPTS 336
Query: 374 GDLDVVIMHPDR---------KSHKG--------------FLSKYVKKLKEMKFLREDLI 410
GD+DV+I KS KG L+ +V+ LK RE I
Sbjct: 337 GDIDVLITRKTNGKGPAIRRTKSKKGGHHHTDEQVLAPQEVLAAFVEALK-----RERYI 391
Query: 411 FSTHSEEGTD-SGVD-----TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
+T ++ T GV Y T P R+D + + + L+ +TG+
Sbjct: 392 EATLAQGATKFMGVSRLRSYNYNAGATSPKLYPARRLDIRFVEPECFPAALLYFTGSKNF 451
Query: 465 NRRLRLLAESKGYRLDDTGLF 485
N +R A + + L++ GLF
Sbjct: 452 NVVMRAEAIKQNFVLNEYGLF 472
>gi|296812843|ref|XP_002846759.1| high-affinity nickel transport protein [Arthroderma otae CBS
113480]
gi|238842015|gb|EEQ31677.1| high-affinity nickel transport protein [Arthroderma otae CBS
113480]
Length = 685
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 14/201 (6%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 281
+Y +I + P K++ ++V LPG + + E G L D +
Sbjct: 279 AYSTSIASLAAYPHKLKLPEEVVSLPGCENRIANLFAEWKHSKNGTLDSATPLTTDPALS 338
Query: 282 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 338
I F +WG+G +A++ Y ++ R LDD+ + D+L+ Q++G+KY+D+ IPR
Sbjct: 339 VIHSFYNIWGVGAKSAREFYYQRQWRDLDDIVEQGWDTLSRVQQIGVKYYDEFLAGIPRE 398
Query: 339 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKG 390
E + + + + V P+ I+ GG YRRGK GD+DV++ H D +
Sbjct: 399 ETASIAATIWRHAKRVRPDADFDGEGVEYIIVGG-YRRGKEVSGDVDVILTHRDERVTSN 457
Query: 391 FLSKYVKKLKEMKFLREDLIF 411
+ V L++ ++ L
Sbjct: 458 LVFDVVASLEQEGWITHTLAL 478
>gi|170097211|ref|XP_001879825.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645228|gb|EDR09476.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 811
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 33/214 (15%)
Query: 180 DFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA-LG-EDR-RSFSYYKAIPVIEKLP 236
+FS D ++Y P K +TE L+ ++ A +G EDR R+FSY K+I + P
Sbjct: 604 NFSEGDEKDEKVVYGGP-APKRLTE----LMELHEAKMGDEDRWRAFSYNKSIRALRNYP 658
Query: 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296
++ S + + + G+G+ I+EI+ TG+L ++ +E+ ++V++ LF ++G+G +T
Sbjct: 659 KRLNSYAEARNIRGVGERTARKIEEILETGELRRI-RYERTDEVKSTRLFQGIYGVGRST 717
Query: 297 AQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFD----------------DIKTRIPR 337
A K Y G RTLDD+ K SL+ +Q +G++++D DI R+PR
Sbjct: 718 AFKWYAAGCRTLDDISAGKFGVSLSRAQEIGIRFYDGANANFTPHTTLILQTDINDRMPR 777
Query: 338 HEVEQMERLLQKAG-----EEVLPEVIILCGGSY 366
E + + L++ G V +LC Y
Sbjct: 778 IEAKAIFDLIKPIGFNLFMSSVFQRASLLCSTLY 811
>gi|159484785|ref|XP_001700433.1| pol lambda-related class X DNA repair polymerase [Chlamydomonas
reinhardtii]
gi|158272320|gb|EDO98122.1| pol lambda-related class X DNA repair polymerase [Chlamydomonas
reinhardtii]
Length = 1599
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 227 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 286
+A+ V +L ++S DQV+ L G+G ++EI+ TG+L + +E E T+ LF
Sbjct: 1115 RALAVCARLTQPLQSPDQVQRL-GLGAKTAKKLEEILATGRLQRNAVWEGSELRATMKLF 1173
Query: 287 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
+VWG +TA+K Y G R+L D+ LT QRLGL +F D R+ R EV +
Sbjct: 1174 TQVWGCAESTARKWYVGGARSLSDVAARSDLTAQQRLGLTHFHDFSRRLARAEVAEAAAG 1233
Query: 347 LQKAGEEVLPEVIILCG------------GSYRRGKASCGDLDVVI 380
+++ EVL ++ L GSY RG S D+D +I
Sbjct: 1234 VRRVTLEVLQDLTGLPQHVVADRLHVRPMGSYARGAPSSSDVDFII 1279
>gi|254582759|ref|XP_002499111.1| ZYRO0E04048p [Zygosaccharomyces rouxii]
gi|186703773|emb|CAQ43463.1| DNA polymerase IV [Zygosaccharomyces rouxii]
gi|238942685|emb|CAR30856.1| ZYRO0E04048p [Zygosaccharomyces rouxii]
Length = 552
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 158/385 (41%), Gaps = 73/385 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQD 257
N+ + + L + Y+ G++ RS Y A I++LP +IES Q K + +G S+
Sbjct: 175 NELVIKFLDILAHRYKVKGDNFRSRGYNLAKIGIQRLPHEIESGVQAQKEVSNVGSSIAK 234
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 317
IQ I+ TG L +E + ++ + +G TA++ G ++ ++ +
Sbjct: 235 KIQTILDTGTLPG--AYESPQFEESLQYLSKCHNVGTYTARRWTNLGLKSFAEVSQK--F 290
Query: 318 THSQR------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
H + G +++D IPR E Q+ER++ + + V P + GSY RG
Sbjct: 291 PHELKTDWPILFGWSFYEDWSIPIPRQECSQIERIVNQELKSVDPACQVEIQGSYLRGAD 350
Query: 372 SCGDLDVVIMHPD----------------RKSHKGFLSKYVK---KLKEM-------KFL 405
CGDLD++ + R KG++ +++ ++ E+ +F
Sbjct: 351 YCGDLDMLFHKKNCNDTTELSSIMEEVAIRLYDKGYIKCFLQLTPRICELFAPKILDRFK 410
Query: 406 REDL--------------------IFSTHSEEGTDSGV----DTYFGLCTYPGRELRHRI 441
+ +L I + ++ G + D + L T G R R+
Sbjct: 411 KCNLQAKTITPSNERIKKFYFGFQIPGSTAKNGNPKSLLLSDDQFMSLNTKVGNPCR-RV 469
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 501
DF + WTG NR LR++A KG +L GLF K V +
Sbjct: 470 DFFSCKWSELGASRLQWTGPKEFNRWLRMIAIEKGMKLTQHGLF-------DKNDVLIES 522
Query: 502 SLKFDTEKEVFDFLGFPWLEPHERN 526
+ + ++F L P++ P ERN
Sbjct: 523 FI----DTKIFQALDQPYIGPEERN 543
>gi|410697475|gb|AFV76543.1| DNA polymerase IV (family X) [Thermus oshimai JL-2]
Length = 575
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 160/358 (44%), Gaps = 75/358 (20%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 251
N+ + ++F ++ + LG++ R +Y +A + L IE+ Q KG LPGI
Sbjct: 3 NEELAQVFEEIALMSEFLGDNPFRVRAYLEAARTLRDLDIPIETVAQ-KGKEALLELPGI 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 309
G + + I E + TG++ K H E +V R + V G+GP TA++LYE G +L+
Sbjct: 62 GPDLAEKILEFLATGRVKK--HQELLAQVPRGVLAVMAVPGVGPKTARQLYEALGIDSLE 119
Query: 310 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG----------------EE 353
LK ++L L LK F K R ++ LLQ G EE
Sbjct: 120 GLK--EALERGDLLKLKGFGPKKAERIREGLD----LLQATGRRRPLGAVLSFARNFLEE 173
Query: 354 V--LPEV--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEMKFLRED 408
+ LP V LC GS RR K + GDLD + P + +GF+ +LK +
Sbjct: 174 IRALPGVEKAELC-GSARRYKETVGDLDYLAASPTPERVVEGFV-----RLKGVAR---- 223
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+++ E T V GL ++D +V P + + GL TG+ + RL
Sbjct: 224 -VYAKGEERAT---VFLKDGL----------QVDLRVVPPESFGSGLQYLTGSKDHSIRL 269
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R LA+ KG +L + G+F R L TE+EV+ LG PW+ P R
Sbjct: 270 RALAQEKGLKLSEYGVF------------RGEERLAGATEEEVYAALGLPWIPPPLRE 315
>gi|206895366|ref|YP_002246803.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
5265]
gi|206737983|gb|ACI17061.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
5265]
Length = 571
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 62/350 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 254
N+ + + ++ I G+ R +Y +A +E L IE ++ +PGIG+S
Sbjct: 3 NQEVANLLRQIAKILEIKGDSTFRIRAYEEAATRVENLAEPIEDIWKRGELTNVPGIGES 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 313
+ I+E + TGK S LE KD + EV GIGP A +LY E G +++++L
Sbjct: 63 IAAKIEEYLKTGKSSYLEEISKDIPKGLFEMM-EVPGIGPRLAWRLYTEAGIQSIEEL-- 119
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE-------EVLPEVI------- 359
E +L + GL+ F ++ + ++ ++ Q +G ++ VI
Sbjct: 120 ERALVEHKLQGLRGFG---AKMEKKLLDGIQMYRQLSGRIPLYLALPIVHNVITYLKGHA 176
Query: 360 ----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
I GS RRG+A GD DV++ D + +VK + L +
Sbjct: 177 KFVDIAPAGSLRRGRADIGDCDVLVATDDPIP---VMEAFVKMPGVAQVLAKG------- 226
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
D+ + G ++D + P + + L +TG+ N +LR LA K
Sbjct: 227 ----DTKASVFTGGL---------QVDLRAVPVESWGAALQYFTGSKAHNIKLRELAIKK 273
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GY+L++ GLF + V R TE+E+++ LG PW+ P R
Sbjct: 274 GYKLNEYGLFKMDT----DEKVAGR------TEEEIYNALGLPWIPPTMR 313
>gi|366988055|ref|XP_003673794.1| hypothetical protein NCAS_0A08550 [Naumovozyma castellii CBS 4309]
gi|342299657|emb|CCC67413.1| hypothetical protein NCAS_0A08550 [Naumovozyma castellii CBS 4309]
Length = 576
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 112/455 (24%), Positives = 178/455 (39%), Gaps = 98/455 (21%)
Query: 137 EDVEHFQAESKGDVETNALSEAPN-SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 195
E+V +AE++G++E + + N + M E HI +P + +
Sbjct: 140 ENVPDSEAETEGNIELESFEDVENRNSMQYE------------------HINEPLIESSY 181
Query: 196 PDLNKNITEIFGKLINI----YRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPG 250
+L KN ++ K +N+ YR G+ R+ SY A IEK P+KIES Q + L
Sbjct: 182 INLGKN--DVLIKALNLLAKKYRLKGDQFRARSYTLAKASIEKCPYKIESGAQAQRELTN 239
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 310
IG S+ I I+ TG L LE E R + F +G A++ + D
Sbjct: 240 IGLSIAKKIDIILKTGILPGLEEVNLVE--RKLDYFTNCHAVGSYKAKRWELFKLSSFSD 297
Query: 311 LKN---EDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 366
+ +D +T L G Y++D RI R E E ++++ + + P + GSY
Sbjct: 298 VVTRFPDDFITDWTMLFGWSYYEDWSKRISREECECHLKIVKDTLKTIDPSCHVELQGSY 357
Query: 367 RRGKASCGDLDVVIMHP---DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV 423
RG +CGD+D++ D K K V+ L F++ L+ ++ +E +
Sbjct: 358 VRGSETCGDIDLLFYKQYCDDTKEIGIIFEKLVRLLFRKGFIQCSLMLTSKLQETFKDIL 417
Query: 424 DTYFGLC--TYP-GREL-RHRIDFKVY-----PRDIYA---------------------- 452
F C YP G L I+ K Y P +Y
Sbjct: 418 RERFQKCGLKYPSGSSLFASDINKKYYLGTKLPTSVYKARDEPPLLKLKECDKYMSLSSS 477
Query: 453 -----------FGLIAW----------TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
F W TG+ NR +RLLA+ G +L GLF
Sbjct: 478 RKNENPCRRLDFFCCKWSEIGAARMQWTGSGEFNRWIRLLADKHGLKLSQHGLF------ 531
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R L+ E+++F L +++P R+
Sbjct: 532 -----TREGELLESYDERKIFQLLHVDYVKPELRS 561
>gi|356501983|ref|XP_003519802.1| PREDICTED: uncharacterized protein LOC100785228 [Glycine max]
Length = 142
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 43/57 (75%)
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
L+ AESKG+R DDT LFP+T SGGK G + SLKF TEKE+FDFL PWLEPHE
Sbjct: 75 LKQQAESKGFRFDDTRLFPSTQPSGGKWGAKGSASLKFYTEKEIFDFLDLPWLEPHE 131
>gi|170090083|ref|XP_001876264.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649524|gb|EDR13766.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 154/367 (41%), Gaps = 70/367 (19%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQE-IVTTGKLSKLEHFEKDE-KVR 281
++ AI VI L + I S QV + GIG + + I + ++ G L+ +K+ + R
Sbjct: 76 AFVNAIKVISNLDYPIHSGKQVSAIHGIGAGIANRINDFLIEEGHLND----QKEALQTR 131
Query: 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIPRH 338
+S + GIG A+ L + G + DL K L+ +Q +G+KY ++ + R
Sbjct: 132 ALSELLRIPGIGRIKAKALVDAGCMGIADLVAQKYTHLLSPTQLIGIKYMKHLERPVRRE 191
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD---------RKSHK 389
E +Q+ L+ E + P+ I+ G +RRG ++ ++ V+++HPD +
Sbjct: 192 EADQVIDFLR---ENLCPKYEIIVVGDHRRGASTSLEISVILLHPDVVHVPMPTEPPPNP 248
Query: 390 GFLSKYVKKLKEMKFLREDLIFST------HSE------------EGTDSGVDTYFGLCT 431
K LK++ ++ +L HS E + V + G+
Sbjct: 249 TTSPKKKTPLKKVSQIKTNLTAKARKSCPLHSNILPLLKERGLIAETLGANVGMWQGIVR 308
Query: 432 YPGRELR------------------HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
PG E + R+ + P+ A L+A TG+ NR +R A
Sbjct: 309 LPGPEDQRGTRTERLAAIADTEGQYRRMVIHLIPQKSRATALLALTGDGEFNRDIRSRAS 368
Query: 474 SKGYRLDDTGL---FPATYGSGGKQGVRARTS----------LKFDTEKEVFDFLGFPWL 520
G L+ GL +P + Q + A LK TE+++F LG ++
Sbjct: 369 QLGMLLNLHGLWKWYPNGQVTAESQELNAIEENHSVMGFWGLLKVSTEEDIFPELGLDYI 428
Query: 521 EPHERNL 527
+PH+RN
Sbjct: 429 DPHKRNF 435
>gi|405117777|gb|AFR92552.1| hypothetical protein CNAG_00419 [Cryptococcus neoformans var.
grubii H99]
Length = 343
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 27/240 (11%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 315
I ++VT + +LE D + + F + GIG A+ E+G TL DL +
Sbjct: 102 IYDLVTKKVIPRLEVL--DNRWNAMVKFNRIHGIGKIRARAFAEEGIETLSDLMIAEGGR 159
Query: 316 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
+++ +Q+L ++Y +++ IPR EVEQ +R+++ A P++ GSYRRG++
Sbjct: 160 FTVSDAQKLAIQYHEEMDVMIPRAEVEQFDRIIKDALRREDPKLDFATMGSYRRGESLSS 219
Query: 375 DLDVVIMHPD--RKSHKG----------FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
D+DVV+ H +K +G +SK V L + IFS G
Sbjct: 220 DIDVVVWHESYTKKEKEGKRARKADPNSLMSKVVAALVSANVISPAKIFS--------QG 271
Query: 423 VDTYFGLCTYPGRELRHR-IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
L P HR ID ++ P + + L+ TG+ L + +R A +G+ L++
Sbjct: 272 ESKVLALTQLPKANSLHRQIDIRLCPIESLPYMLLGNTGDGRLMKIMRWRAIQRGWVLNE 331
>gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159]
gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159]
Length = 581
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 50/293 (17%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 306
+PG+GK++ I+E + TG+L E +++ ++ + L EV GIGPA A LYE+ G
Sbjct: 57 IPGVGKAIAAKIEEYLRTGRLEYYEQLKREVPLQAVDLL-EVPGIGPARAHLLYEQLGIT 115
Query: 307 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME---RLLQKAGEEVLPEVI---- 359
T+ DL + + H R + + ++ RI R M+ RLL V EV+
Sbjct: 116 TIQDLL-QAAQEHKLRKLPGFGEKLEERIAREAARLMQRSKRLLLGIALPVAEEVVAALR 174
Query: 360 -------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 412
I GS RR K + GD+D+++ D + V + F++E L
Sbjct: 175 PHAAIRAIDPAGSLRRMKETIGDIDILVASDDPPA-------VVDAFVHLPFVKEVLAVG 227
Query: 413 THSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
T + T L ++D +V Y L+ +TG+ N LR
Sbjct: 228 P-----TRPSILTREDL----------QVDLRVVRPHEYGSALLYFTGSKEHNIALRSFV 272
Query: 473 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ +G++L + GLF T GK L +TE E++ LG W+ P R
Sbjct: 273 QERGWKLSEYGLFDET----GKL-------LASETEHEIYALLGMDWIPPELR 314
>gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
Length = 580
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 141/348 (40%), Gaps = 57/348 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 254
N + E+F + ++ L EDR R +Y +A I LP + + +++ +PG+GK+
Sbjct: 7 NHEVAEMFSAIADLMEILDEDRFRVQAYRRASDAIRDLPAPLATYRDRGELEAIPGVGKA 66
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK- 312
+ I E++ TG+L ++ L V G+GP TA +LY E G +L +LK
Sbjct: 67 IAGKISELLDTGELQYYNRLQEKAPPGVRELL-RVPGVGPRTAGRLYRELGITSLAELKR 125
Query: 313 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC-------- 362
E L + G K + I I E ++ LL A E E +IL
Sbjct: 126 AAEEGRLATLKGFGAKMIEGILQGISVAERQERRMLLAHALETA--EELILALRTAAPTL 183
Query: 363 -----GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
GS RRG+ + GDLD+++ D + V+ + +
Sbjct: 184 RQATYAGSLRRGRPTVGDLDILVAADDAPA-------VVRAFTTLPLVAR---------- 226
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
+S D + + G + D P ++ L +TG+ N R R LA ++G
Sbjct: 227 -VESAGDEKASILLHNGTQ----ADLIAVPPALWGSALQHFTGSKAHNIRFRELALARGS 281
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ G A T L TE+EV+ + PW+ P R
Sbjct: 282 SFSEHGFRRADG-----------TVLTCATEEEVYAAVDLPWIPPELR 318
>gi|432885097|ref|XP_004074656.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Oryzias
latipes]
Length = 358
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 218 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
E+ R ++ +A +++ LP + SA Q++GLP +G+ I+EI+ TG +++E +
Sbjct: 207 EEGRGVAFRRAAALLKTLPSAVMSASQLRGLPCLGEHSLRVIKEILETGTSTEVESTKGS 266
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIP 336
E+ + + + ++G+G TA + +G L L+ L +QR GL+++ DI +
Sbjct: 267 ERFKALKVLTGIFGVGAKTADRWIREGIHDLHQLRASGQVLNRAQRAGLQHYADINQPVT 326
Query: 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 368
R E + +E +++KA VL I+ G +RR
Sbjct: 327 RAEADAIEAIVEKAVSSVLRGAQIVLTGGFRR 358
>gi|225848762|ref|YP_002728926.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644290|gb|ACN99340.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 582
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 150/347 (43%), Gaps = 49/347 (14%)
Query: 197 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 253
++NK I +IF + +IY L + R+ +Y KA V+E LP + + ++ + GIG
Sbjct: 4 NINKEIAKIFRDMAHIYEFLDDKFRALAYQKAAQVLEDLPDDVRNYIALGKLSEIRGIGT 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL- 311
Q+ I E + TGK+ K E +K + L +V G GP T +++Y E G T ++L
Sbjct: 64 HTQEKIIEYIKTGKIQKYEELKKLVPPDFLELM-DVPGFGPKTLKRIYQELGISTKEELI 122
Query: 312 --KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI---------- 359
+ + + G K +++ + +E + ERLL + ++
Sbjct: 123 KALKDGRVAKLKGFGPKKVENMLKGLELYE-KSKERLLLWEALNIANTIVEKLKTLKEIK 181
Query: 360 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
I GS RR K + GD+D++I D+ K D + +
Sbjct: 182 NIELAGSLRRKKETIGDIDILISCDDKDREKVI----------------DFFINLEDVKE 225
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+ DT + +E ++D +V D + GL +TG+ N LR A+S G +
Sbjct: 226 VLAKGDTKASVII---KEKDRQVDLRVLKPDEWGSGLQYFTGSKEHNVHLRDYAKSIGLK 282
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + G+F A G + DTE+ V+ +G W+ P R
Sbjct: 283 ISEYGVFDAKTGE----------KIAGDTEESVYKAVGMQWIPPELR 319
>gi|20067735|emb|CAD29108.1| chimeric DNA-directed DNA polymerase xf4-6h [synthetic construct]
Length = 192
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 35/204 (17%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASCGDLDVVIMHPDRK 386
+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+ P++K
Sbjct: 16 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKMLNDVDLLIIVPEKK 75
Query: 387 SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRHR-I 441
K L + I T S+ G + G+C P E HR I
Sbjct: 76 LLKHVLPNIRR-----------FITDTRSK-----GETKFMGVCQLPSENDENEYPHRRI 119
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 501
D ++ P+D Y G++ +TG+D+ N+ +R A + Y+L+ GLF +
Sbjct: 120 DIRLIPKDQYYCGVLYFTGSDIFNKNMR--AHALNYKLNQYGLFKN----------QTLV 167
Query: 502 SLKFDTEKEVFDFLGFPWLEPHER 525
LK TEKE+ LGF + P +R
Sbjct: 168 PLKITTEKELIKELGFTYRIPKKR 191
>gi|290559313|gb|EFD92648.1| PHP domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 569
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 50/302 (16%)
Query: 239 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
I A ++ L G+GKS+ + I E + TGK+ K + ++D + ++ F ++ G+GP
Sbjct: 47 IYKAGKLTQLEGVGKSIAESITEYIETGKIKKYDKLKRDYPI-DLTTFRKIRGLGPKRVY 105
Query: 299 KLYEKGH-RTLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ----KA 350
LY+K + LDDLK+ + + + G K D++K I + ERLL
Sbjct: 106 FLYKKLKIKNLDDLKSAIESHKIMNLEGFGEKSEDELKRSIESFMSIKEERLLLGYVIDY 165
Query: 351 GEEVLPEVI-------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 403
E ++ +++ + GS RR K + GD+D++ + + ++ F S L E+K
Sbjct: 166 TENIINKLVKSGFFEKVKIAGSMRRMKETIGDIDILAISENPEAGMNFFSN----LDEVK 221
Query: 404 FLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDV 463
+I S ++ + G+ T C D ++ RD + + +TGN
Sbjct: 222 ----SIIVSGPTKTTVELGIGT---TC-----------DIRILKRDSFGAAMQYFTGNKD 263
Query: 464 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 523
N +LR +A SKG +L++ GLF GK+ + + E++++ LG W+ P
Sbjct: 264 HNVKLRKIAISKGLKLNEYGLFK------GKKIIAEK------DEEKIYRELGMDWIPPE 311
Query: 524 ER 525
R
Sbjct: 312 LR 313
>gi|167521203|ref|XP_001744940.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776554|gb|EDQ90173.1| predicted protein [Monosiga brevicollis MX1]
Length = 503
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/535 (20%), Positives = 197/535 (36%), Gaps = 88/535 (16%)
Query: 32 QNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQSVIRYQWLEDSLRL-GEKV 90
QNR +IW+++LVQ+GATV E + TH + + L LRL G
Sbjct: 16 QNRG-RIWKERLVQLGATVTES-PETATHAIVGRTRHVPAPIAA----LTPHLRLVGAPA 69
Query: 91 SEDLYRIKLDPEGENIADRVLSQIQGN--GNTSSDGESSHRKKIKSSTEDVEHFQAESKG 148
D+ R + E A ++ + G N + D S + +
Sbjct: 70 INDVLRERCLDALEREAHHIVVDVTGGVPANFALDAPES-----------------KPRA 112
Query: 149 DVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGK 208
D + + A P + E T S + SS P L N E+ G
Sbjct: 113 DPDASGSDRATPVPGTDEQQEATRVKRSPASHSSSLSGAAPPLKRR----NALAAEMHGG 168
Query: 209 LINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKL 268
L + A S +Y +A + +PF+++S DQ+ LP + ++ + +Q ++ G L
Sbjct: 169 L-QVPHAATASSSSLAYRRAAMALRAIPFEVQSLDQLTNLPLLNRAAHEAVQWVLDHGTL 227
Query: 269 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL----- 323
+ + + + +WG+G A + + G R+ + + H +L
Sbjct: 228 AGFPRLYHESDLDALRDLRRLWGVGVRLAWQFLQHGWRSAEAVVKA---VHEGKLKPANA 284
Query: 324 ----GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 379
+ + D+ IPR ++ + + + P + G YRRG + C D+D++
Sbjct: 285 QLEACCRDWTDLCLPIPRERIDALRVWILGLVQAADPGARVTVTGGYRRGNSECHDVDLI 344
Query: 380 IMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV---------------- 423
I + L + + +++ L ++++G
Sbjct: 345 IA-ASAMAPGALLQRVLADVRQAGCL-------VYAQDGAGPAAAEAHQSLQRKLSSRAL 396
Query: 424 ----------DTYFGLCTY--PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
D LC P + + R+D + F ++ WTGN + NR +R
Sbjct: 397 PLQRSHSTFDDLPRALCIICEPETKTKRRVDLVLCAAAQEPFAVLGWTGNRMYNREIRRW 456
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A++ G+ L GL+ G + ++ + LG P L P +R+
Sbjct: 457 ADAHGFHLTAAGLWDLEQGG---------VFVPAESPTAIQRLLGLPTLSPEQRH 502
>gi|20067727|emb|CAD29104.1| chimeric DNA-directed DNA polymerase xf3-9e [synthetic construct]
Length = 205
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 28/207 (13%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSE 76
Query: 389 KG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH- 439
L + V++L++++F+ + L G + G+C P E H
Sbjct: 77 SSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYPHR 126
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 499
RID ++ P + + + +TG R+R + G+ +++ + P G GV A
Sbjct: 127 RIDIRLIPAEEKPYTIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-A 177
Query: 500 RTSLKFDTEKEVFDFLGFPWLEPHERN 526
L D+E+++FD++ + + EP +R+
Sbjct: 178 GEPLPVDSEQDIFDYIQWRYREPKDRS 204
>gi|13541687|ref|NP_111375.1| family X DNA polymerase [Thermoplasma volcanium GSS1]
gi|14325087|dbj|BAB60012.1| DNA-dependent DNA polymerase family X [Thermoplasma volcanium GSS1]
Length = 516
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 153/353 (43%), Gaps = 61/353 (17%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIESA------DQVKGL 248
+N++I IF ++ + A GE + F +Y KA I + +E+ D + +
Sbjct: 2 INQDIARIFTEIAYLLEAAGEQKSQFEANAYLKASRAISSMQEDLETIYEKGGKDALLSI 61
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 307
PGIGK + D I E + +G + K E +K + ISL ++ G+GP LY+ G
Sbjct: 62 PGIGKGIADKIVEYINSGSIQKYEDLKKKYPIDFISLM-KIEGLGPKKLAVLYQALGITN 120
Query: 308 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL-----LQKAGEEVLP------ 356
+++L+N L H R G+ F + +E ER+ + KA E L
Sbjct: 121 VEELRNA-ILNHKVR-GIPGFGEKSENQLLKNIEMAERVSERIPIWKAYPEALRIKNYLE 178
Query: 357 ----EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 412
+I+ GS RR K + GD+D++ S+Y L + KF+ D + S
Sbjct: 179 STGYALIVEIAGSTRRMKETIGDIDILAA-----------SEYPNALMD-KFVEMDGVSS 226
Query: 413 THSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
++ S V G D ++ ++ + + +TG+ N +LR LA
Sbjct: 227 IIAKGDKKSTVSLKIGTTC----------DLRIVSKESFGAAMQYFTGSKDHNIKLRRLA 276
Query: 473 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG +L++ GLF SG K V E++V++ L ++ P R
Sbjct: 277 IGKGMKLNEYGLF-----SGDKNIVSGM------PEEKVYETLDLAYIPPELR 318
>gi|224373470|ref|YP_002607842.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
AmH]
gi|223589333|gb|ACM93069.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
AmH]
Length = 546
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 154/351 (43%), Gaps = 64/351 (18%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGK 253
NK I +I K ++ GE+ + +Y A ++E ++ + LPGIG
Sbjct: 4 NKQIADILSKTADLMEIKGENPFKVRAYRNAARILENSAKDFSKLVKEGFDLTKLPGIGH 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
+ ++I+EIV TGK KLE +K+ + L + G+GP ++LYE G + +DDLK
Sbjct: 64 DLSEYIKEIVNTGKFHKLEELQKEIPKGVVELLS-IEGLGPKRVKQLYETFGIKNMDDLK 122
Query: 313 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQM-----ERLLQKAGEEV 354
+L G+K R EVE + LL+ G E
Sbjct: 123 KYAYSGELDKLPGFGPKLIEKILKGVKQLKKAGIRFLWAEVEDTANELKDYLLEFEGVET 182
Query: 355 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
+ GS+RR K S GDLD++++ D +S+Y K ++K +
Sbjct: 183 VD-----IAGSFRRKKESVGDLDILVIAKDYPK----VSEYFIKFHKVK--------EVY 225
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
S+ T S V + +L ++D + ++ Y L +TG+ N +R LA
Sbjct: 226 SKGLTRSTV--------FLDNDL--QVDLRAVAKESYGAALHYFTGSKSHNIEIRKLAIQ 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG ++++ G++ +G SL TE++V+ +G ++EP R
Sbjct: 276 KGLKINEYGVY---------KGNERIASL---TEEDVYKSVGLEYVEPELR 314
>gi|342319290|gb|EGU11239.1| Sorting nexin-41 [Rhodotorula glutinis ATCC 204091]
Length = 808
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 132/323 (40%), Gaps = 89/323 (27%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
+ S SY A+ I PFKIE+ +Q +P IG+ + IQE + G F K+ +
Sbjct: 58 KESISYATAVSCIIGTPFKIETVEQAAKIPKIGEKLTLKIQEFLDYG-------FIKESR 110
Query: 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 339
A A +LYE+G RTL+DL+ + + LKY+DD++ +
Sbjct: 111 Y--------------AKANELYERGVRTLEDLRRAMNRPRIKSY-LKYYDDMQEK----- 150
Query: 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS-HKGFLSKYVKK 398
YRRGK D+D++ +P R +G L V++
Sbjct: 151 --------------------------YRRGKEFSNDVDILFTYPHRDGEERGVLQALVER 184
Query: 399 LKEMKFLREDLIFSTHSEEGTD------------SGVDTYFGLCTYPG------RELRHR 440
+++ + ED I T + GTD +D + +P R+ R
Sbjct: 185 MQQKNLIPEDGIL-TLTTCGTDRTITPNRSATLLDALDKALIIFRHPANGTTRVRDKYRR 243
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
+D V + ++ WTG+ R LR A+ + D SG G+R R
Sbjct: 244 VDLVVTTWREWGSAVVGWTGSTQFERDLRRHAKRINLKFD----------SG---GIRNR 290
Query: 501 TS---LKFDTEKEVFDFLGFPWL 520
T+ ++ TEK+VF LG ++
Sbjct: 291 TTDEPVEAVTEKDVFRVLGLDYI 313
>gi|194238174|ref|XP_001916245.1| PREDICTED: DNA polymerase beta-like, partial [Equus caballus]
Length = 123
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN+ IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNEGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 309
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLE 123
>gi|15678578|ref|NP_275693.1| DNA-dependent DNA polymerase X protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621626|gb|AAB85056.1| DNA-dependent DNA polymerase family X [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 550
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 153/344 (44%), Gaps = 52/344 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 255
N + I ++ + G++ R+ +Y +A +E L IE +++ LPGIG+++
Sbjct: 3 NHLVAHILNRVADYMELAGDEFRTKAYRRAARTVEFLNEDIEEVAARGRLQELPGIGRNI 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
I+EI++TG L LE ++ V SL V G+GP T + LYE+ G +TL DL+ +
Sbjct: 63 AGKIEEILSTGSLQLLERLSEEYPVDLDSLLS-VEGVGPRTVKLLYEELGIKTLADLEEQ 121
Query: 315 DSLTHS----------QRLGLKYFDDIKTRIPRHEVEQMERLLQ--KAGEEVLPEVI-IL 361
+ + L+ + ++RI R + + L KAG L V +
Sbjct: 122 ARRHRIRRLRGMGEKREAMILRNIELARSRISRRPLAYVVPLASRIKAGLLELEGVQRVE 181
Query: 362 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDS 421
GS RRG+ + GD+D+++ D ++ + + +++E+ +R + EG D
Sbjct: 182 VAGSIRRGRETVGDIDILVTATDPEAVMDHFTS-MDEVEEV-VVRGPRKSTVRLREGLD- 238
Query: 422 GVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
C D +V+ +++ L+ +TG+ N LR A S +L +
Sbjct: 239 --------C-----------DLRVFDDEVFGSALLYFTGSWEFNVELRRRAISSSMKLSE 279
Query: 482 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GLF G+ TE V + LG ++EP R
Sbjct: 280 YGLFRGDERVAGR------------TEAGVLEALGLSYIEPELR 311
>gi|449548816|gb|EMD39782.1| DNA polymerase IV [Ceriporiopsis subvermispora B]
Length = 406
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 157/370 (42%), Gaps = 65/370 (17%)
Query: 218 EDRRSF---SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI--------QEIVTTG 266
ED+ + ++ AI VI + +IES ++V+ + GIGK + I QE
Sbjct: 32 EDKNPYKIKAFTSAIAVINRFDHRIESVEEVRDVKGIGKGIAKRIALFLSGEQQEEAENH 91
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTHSQRL 323
++E E++++ + + + G+G A KL G +L+ L+ + L S ++
Sbjct: 92 VSVQVEDTEENKQRKAMQELTTIHGVGRVLAGKLVALGCMSLEHLRQPEFYNQLAPSMKV 151
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
GL + D + R+ R + E + ++ + + + I GSYRR + D+DV+I HP
Sbjct: 152 GLDFVDHLDHRVTRPQAEAVIDFMK---DNMSSKFEISLVGSYRRESPTSSDVDVLIFHP 208
Query: 384 DR----KSHKGFLSKYV---------KKLKEMK----FLREDLIFSTHSE---EGT-DSG 422
+G S YV K K K L+++++ GT SG
Sbjct: 209 SYVHIPTPAQGPPSGYVGGRPPSPHRSKTKTAKRDTTLLQQEVVQPLIDRGLIAGTLSSG 268
Query: 423 VDTYFGLCTYPGR------ELRHRI-------------DFKVYPRDIYAFGLIAWTGNDV 463
+ G+ P R +L R+ D + P L+A TG+
Sbjct: 269 TSKWRGVVLVPSRVDDRWEDLSQRVEAIAEKTGTFRRMDLNLIPIKSRGAALLALTGDAT 328
Query: 464 LNRRLRLLAESKGYRLDDTGLFP-ATYGSGGKQGVRARTSLK-------FDTEKEVFDFL 515
LNR +R A +G L++ GL+ G+G G + K ++E+ + + L
Sbjct: 329 LNREMRSNAIKQGMLLNEYGLWRWKANGNGASNGDDSSDEAKGYWELVEAESEERIVELL 388
Query: 516 GFPWLEPHER 525
G +LEP +R
Sbjct: 389 GMEYLEPAQR 398
>gi|163782603|ref|ZP_02177600.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159882176|gb|EDP75683.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 581
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 155/346 (44%), Gaps = 51/346 (14%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 254
NK + +IF K+ +I LG++ R SY +A +I +LP IE ++ LPGIG S
Sbjct: 5 NKELAQIFEKIADILEFLGDNIYRVNSYRRAANLISELPEDIEELYRRGKLTKLPGIGSS 64
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
I+E + TG + K E K + L +V GIGP T + YEK G R+ +D
Sbjct: 65 TLLKIEEFLRTGTVKKYEDLRKRVPEDLLELM-DVPGIGPKTLKVAYEKLGVRSKEDFIR 123
Query: 314 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMER-LLQKAGEEVLPEVI 359
+L G++ ++ ++ RIP E M + +L+ E E I
Sbjct: 124 ALKDGSLAKLPGFGPKKVEKILKGIELWESVQERIPLIEAYPMAQDVLEYMKREESIENI 183
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ G S RR K + GD+D+++ +RK+ + +V+ K L +
Sbjct: 184 SVAG-SLRRMKETIGDIDILVT-AERKNWRRIHEYFVRYPDVNKILAKG----------- 230
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+T + GR+ +D + + + L +TG+ N R+R +A+ KG ++
Sbjct: 231 ----ETKSSVVLKNGRQ----VDLRTVEPESWGAALQYFTGSKEHNVRVRDIAKEKGLKV 282
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F A L ++E+EV+ +G W+ P R
Sbjct: 283 NEYGVFRAD----------TEERLGGESEEEVYRLVGMQWIPPEIR 318
>gi|20067739|emb|CAD29110.1| chimeric DNA-directed DNA polymerase xf4-4l [synthetic construct]
Length = 186
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 38/202 (18%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P++K
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYI---AGSLRREEKMLNDVDLLIIVPEKK-- 71
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRHR-IDF 443
L K+V L I T S+ G + G+C P E HR ID
Sbjct: 72 ---LLKHV--------LPNRFITDTRSK-----GETKFMGVCQLPSENDENEYPHRRIDI 115
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
++ P+D Y G++ +TG+D+ N+ +R A + Y+L+ GLF + L
Sbjct: 116 RLIPKDQYYCGVLYFTGSDIFNKNMR--AHALNYKLNQYGLFKN----------QTLVPL 163
Query: 504 KFDTEKEVFDFLGFPWLEPHER 525
K TEKE+ LGF + P +R
Sbjct: 164 KITTEKELIKELGFTYRIPKKR 185
>gi|296121981|ref|YP_003629759.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
gi|296014321|gb|ADG67560.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
Length = 570
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 142/352 (40%), Gaps = 65/352 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI-----ESADQVKGLPGIG 252
N I +L ++ LGE+ R +Y A IE LP ++ +S + L GIG
Sbjct: 3 NSQIAAALTELADLLELLGENAFRVRAYRNAARTIESLPDEVTLLLDQSPHALLELEGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 311
K + I + TTG+L +L+ + + ++ G+GP L+++ TLDDL
Sbjct: 63 KDLAQKISSLATTGQLDQLDEVRSQVPPGVVQML-KIPGLGPKKVATLWKELQVNTLDDL 121
Query: 312 -----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-AGEE 353
K E S+ L + + I R EQ+ + L+K AG E
Sbjct: 122 QAAATAGRVAELKGFGKKTEQSILEGISLAAEAGRRVLISIAREAAEQIAQSLRKVAGVE 181
Query: 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
+ GS RR K +CGDLD++ + D + LS++ L R + T
Sbjct: 182 RVE-----IAGSARRWKETCGDLDLLAIAADSTTAMDELSQH--PLVSQVVARGE----T 230
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
SG+D +D +V P + + +TG+ N +R LA+
Sbjct: 231 KQHVRLKSGID----------------LDLRVVPPESFGAAWQYFTGSKEHNVVMRRLAQ 274
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG +L++ GLF R + E+ ++ L PW+ P R
Sbjct: 275 EKGLKLNEYGLF------------RGEEMVAGTDEESIYKTLELPWIPPELR 314
>gi|20067725|emb|CAD29103.1| chimeric DNA-directed DNA polymerase xf3-9d [synthetic construct]
Length = 207
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 30/209 (14%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSE 76
Query: 389 KG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH- 439
L + V++L++++F+ + L G + G+C P E H
Sbjct: 77 SSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQLPSENDENEYPHR 126
Query: 440 RIDFKVYPRDI--YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
RID ++ P+D + + +TG R+R + G+ +++ + P G GV
Sbjct: 127 RIDIRLIPKDAEEKPYTIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV 178
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A L D+E+++FD++ + + EP +R+
Sbjct: 179 -AGEPLPVDSEQDIFDYIQWRYREPKDRS 206
>gi|146078013|ref|XP_001463421.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania infantum
JPCM5]
gi|134067506|emb|CAM65785.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania infantum
JPCM5]
Length = 1481
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 151/402 (37%), Gaps = 124/402 (30%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 229
PD + + +IF +L I ALGE +S Y + +
Sbjct: 956 PDYRERVVQIFEQLTQINSALGERFKSQLYGRTVERFKRGDKVFQLLPPNLLPLPEEDPK 1015
Query: 230 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 267
+IE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 1016 KKAIIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 1074
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD------------DLKNE 314
L +L E +R I +V G+GP TA ++K G T+ D+ N+
Sbjct: 1075 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGISTVAQLRDYAIKAGELDMSNK 1134
Query: 315 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 357
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 1135 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 1194
Query: 358 -VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---------FLSKYVKKLKEMKFLRE 407
+++C GSYRR S GD+DV+I H + G L ++ LK K++
Sbjct: 1195 YELVVC-GSYRRQVESAGDIDVLITHKRSATEGGGRPLLPPSEVLGSFLAGLKADKYIEA 1253
Query: 408 DLIFSTHSEEGTDSGVDTYFGLC------------------------TYPGRELRHRIDF 443
L G + GLC P + R+D
Sbjct: 1254 TLA----------QGPTKFMGLCRLRAMGTESVSAATGKGKTAKTNGKAPTKFRARRLDV 1303
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ D + ++ +TG+ N +R A K L++ GLF
Sbjct: 1304 RYVDSDSFPAAMLYFTGSKNFNVIMRSEAIKKHCVLNEYGLF 1345
>gi|384431336|ref|YP_005640696.1| PHP domain-containing protein [Thermus thermophilus SG0.5JP17-16]
gi|333966804|gb|AEG33569.1| PHP domain protein [Thermus thermophilus SG0.5JP17-16]
Length = 575
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 161/352 (45%), Gaps = 63/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 251
N+ + IF ++ + LG++ R +Y++A + L IE + KG LPGI
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAE-KGKEALLELPGI 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 309
G + + I E + TG+++K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLAEKILEFLKTGRIAK--HEELAQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLE 119
Query: 310 DLK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLP 356
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 120 KLKAALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LP 178
Query: 357 EV--IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V LCG S RR K + GDLD ++ S +G + V+ + ++E I++
Sbjct: 179 GVERAELCG-SARRYKDTVGDLDFLV-----ASREG--ERVVEGFVRLPQVKE--IYAKG 228
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
E T V GL ++D +V P + Y GL TG+ + RLR LA+
Sbjct: 229 KERAT---VFLNNGL----------QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQE 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG +L + G+F R L +TE+ V+ LG P++ P R
Sbjct: 276 KGLKLSEYGVF------------RGEKRLAGETEEGVYAALGLPFIPPPLRE 315
>gi|328954246|ref|YP_004371580.1| PHP domain-containing protein [Desulfobacca acetoxidans DSM 11109]
gi|328454570|gb|AEB10399.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
Length = 577
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 142/352 (40%), Gaps = 65/352 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 252
N I IF + G + ++Y KA +E L +E +K +PG+G
Sbjct: 3 NHEIARIFQVIAEYLEMEGVRFKPYAYQKAALTLENLKDSVEDIYNQGGLKGLKAIPGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 311
+S+ I+E + TGK+ E F + + +L V G+GP A+ L+EK G L +L
Sbjct: 63 ESIAQKIEEYLNTGKIEYYEEFRRKLPIDLDALIA-VEGMGPKKAKMLFEKLGITNLTEL 121
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC--------- 362
E++ + LK F D + + +E +E + + G +L EV+ L
Sbjct: 122 --EEAARSHKIAPLKGFGD---KTEANIIEGIEFVKKSTGRFLLGEVLPLADRVLATLRA 176
Query: 363 ---------GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
GS RR K + GDLD + + + F F+ + +
Sbjct: 177 LPEVQRADVAGSLRRMKETIGDLDFLAISSQPEKVMDF------------FVSQPEVVKV 224
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
+ T S V G+ +D +V P Y L ++G+ N LR +A
Sbjct: 225 YGRGQTKSSVRLRQGV----------DMDLRVIPPGSYGAALQYFSGSKEHNIALRQIAI 274
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
K Y+L++ GLF G TE+EV+ LG PW+ P R
Sbjct: 275 DKDYKLNEYGLFEGDRMIAGA------------TEEEVYAKLGLPWIPPELR 314
>gi|398010899|ref|XP_003858646.1| mitochondrial DNA polymerase beta-PAK, putative [Leishmania donovani]
gi|322496855|emb|CBZ31925.1| mitochondrial DNA polymerase beta-PAK, putative [Leishmania donovani]
Length = 1480
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 151/402 (37%), Gaps = 124/402 (30%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 229
PD + + +IF +L I ALGE +S Y + +
Sbjct: 955 PDYRERVVQIFEQLTQINSALGERFKSQLYGRTVERFKRGDKVFQLLPPNLLPLPEEDPK 1014
Query: 230 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 267
+IE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 1015 KKAIIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 1073
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD------------DLKNE 314
L +L E +R I +V G+GP TA ++K G T+ D+ N+
Sbjct: 1074 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGISTVAQLRDYAIKAGELDMSNK 1133
Query: 315 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 357
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 1134 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 1193
Query: 358 -VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---------FLSKYVKKLKEMKFLRE 407
+++C GSYRR S GD+DV+I H + G L ++ LK K++
Sbjct: 1194 YELVVC-GSYRRQVESAGDIDVLITHKRSATEGGDRPLLPPSEVLGSFLAGLKADKYIEA 1252
Query: 408 DLIFSTHSEEGTDSGVDTYFGLC------------------------TYPGRELRHRIDF 443
L G + GLC P + R+D
Sbjct: 1253 TLA----------QGPTKFMGLCRLRAMGTESVSAATGKGKTAKTSGKAPTKFRARRLDV 1302
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ D + ++ +TG+ N +R A K L++ GLF
Sbjct: 1303 RYVDSDSFPAAMLYFTGSKNFNVIMRSEAIKKHCVLNEYGLF 1344
>gi|406874088|gb|EKD24116.1| hypothetical protein ACD_81C00106G0008 [uncultured bacterium]
Length = 581
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 58/302 (19%)
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV--RTISLFGEVWGIGPATAQKLY- 301
++ +PG+G S+ + I+E + TG++ E +K V RT+S V G+GP +KLY
Sbjct: 57 IEKIPGVGVSIAEKIEEYIKTGRIQHYEELKKKIPVDLRTLS---AVEGLGPKKIKKLYW 113
Query: 302 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-- 359
E +TL DL+ + +L+ + L D + + ++ +E + G VL V
Sbjct: 114 ELDIKTLADLE-QAALSGA----LNKVDGFGPKSTENIIKGIEFVKTSGGRLVLGNVFPA 168
Query: 360 ----------------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 403
+ GS RR K + GD D++++ D + F K
Sbjct: 169 IAHIKSELEGIKGVEKVSIVGSARRKKETVGDFDLLVVAKDAQPVMDFFVK--------- 219
Query: 404 FLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDV 463
+RE + H+ T S V G+ +D +V ++ Y L+ +TG+
Sbjct: 220 -MRE--VIRVHAHGATKSSVRIKSGI----------DVDIRVVSKESYGAALVYFTGSKA 266
Query: 464 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 523
N LR LA KG +L++ GLF GGK+ + DTE+ +++ LG ++EP
Sbjct: 267 HNVLLRQLAIKKGLKLNEYGLFRM---KGGKE----EKMVAGDTEEGIYNTLGLEYIEPE 319
Query: 524 ER 525
R
Sbjct: 320 MR 321
>gi|386812371|ref|ZP_10099596.1| DNA polymerase [planctomycete KSU-1]
gi|386404641|dbj|GAB62477.1| DNA polymerase [planctomycete KSU-1]
Length = 574
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 147/352 (41%), Gaps = 67/352 (19%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 254
N I +F ++ N+ GE+ R SY KA ++ + IE ++K +PGIG+
Sbjct: 3 NHEIAALFERIANVLELKGENAFRINSYRKAARILGDVTEDIEVLAREGKLKDIPGIGEG 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
M + I E + TGK+SK + K+ TI+L ++ G+GP T L +K G +L DL
Sbjct: 63 MAEKIMEYIHTGKMSKYDEVMKEISEETITLM-QIPGLGPKTVAMLNKKLGIVSLSDL-- 119
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVE----QMERLLQKAGEEVLPEVI---------- 359
E +L + GL D K + +E +R+ V+ +I
Sbjct: 120 EKALQEGKLKGLFGMGDKKIQNIMRGIELFKTSQQRIPIGMAYPVVKGIIEVLKHHSQTR 179
Query: 360 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE-----DLIFST 413
I GS RR K + GD+D++ + VK M+ + + D S
Sbjct: 180 DIQSAGSLRRMKETVGDIDILATGTHGED-------IVKSFVTMRGVTQILAAGDTKGSV 232
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
EEG ++D +V D + L +TG+ N LR +A+
Sbjct: 233 RVEEGV--------------------QVDLRVVREDEFGSALQYFTGSKEHNVHLREIAK 272
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KGY++ + G+F GG + E+E++ LG W+ P R
Sbjct: 273 KKGYKISEYGIFKDNKKIGGSR------------EEEIYKVLGMDWIPPELR 312
>gi|397779769|ref|YP_006544242.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
gi|396938271|emb|CCJ35526.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
Length = 576
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 143/342 (41%), Gaps = 58/342 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPV-IEKLPFKIESADQ--VKGLPGIGKSM 255
N+++ E + + G D+ Y +E+L + D+ + +PGIG +
Sbjct: 29 NRDVAEQLALMGRLLEVAGADQHRAGAYARAARQVERLSIPVAGLDEEALTRIPGIGVRI 88
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
IQEI TG +L+ + I L +V G+GP T L++K G +T+DDL E
Sbjct: 89 AAQIQEIAGTGSFRELDDLQATIPGSVIDLL-DVSGVGPRTLHTLWKKLGIQTIDDL--E 145
Query: 315 DSLTHSQRLGLKYF----DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-------CG 363
++ + GL+ F ++ R R E+ R+ + + VL V L
Sbjct: 146 AAVKGRRIRGLRGFGAKKEEAIGRGIRRYRERSNRMTRPQADAVLGSVAALFPDGQYAVA 205
Query: 364 GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV 423
GSYRRG ++ G +D+V DR + L + KE L + SG
Sbjct: 206 GSYRRGASTVGKIDIVTT-ADRAALMDHLLAGPGEDKEEVSL-------------SISGA 251
Query: 424 DTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
R++ + D Y L+ TG+ RL +A+ +GYRL+ G
Sbjct: 252 ----------------RVNVRFTDPDQYGTALLCATGSGAFLARLAAVAQEQGYRLEPGG 295
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L +T SG Q F +E+EVF FLG + P R
Sbjct: 296 LVEST--SGRLQ--------AFGSEEEVFGFLGMETVPPELR 327
>gi|340053719|emb|CCC48012.1| putative mitochondrial DNA polymerase beta-PAK [Trypanosoma vivax
Y486]
Length = 1118
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 156/376 (41%), Gaps = 93/376 (24%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 243
PD + + +F KL +I AL E ++ SY A+ +++ +P ++ A+
Sbjct: 618 PDHREKVLTVFQKLSDINIALQERYKAHSYQFALERLKRDDYIYTHLPPHIMPPGVDDAE 677
Query: 244 Q------VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
+ V+ +P IG ++ I EI+TTG L +L + ++ I ++ G+GP TA
Sbjct: 678 RRRRVAAVEAIPNIGDKLKTKIVEILTTGDLEELHGLQAKPVIKAIRELTQIHGVGPRTA 737
Query: 298 QKLYEK-GHRTLDD----LKNEDS------------------------------------ 316
L++K G +T+++ ++ +++
Sbjct: 738 VVLFKKYGLKTVEEVEKRIREQEAAQASSGVAGSDGKTNKGGAKKGRGGKVADGEVPLLQ 797
Query: 317 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCG 374
LT +QR GLKY D RIP EV E L+ + L + + +C GSYRR + G
Sbjct: 798 LTEAQRCGLKYHSDFAQRIPHEEVRLHEAFLKLRLRKYLGKSYELSIC-GSYRRRLPTSG 856
Query: 375 DLDVVIMHPDRKSHKGF-------LSKYVKKLKEMKFLRE--DLIFSTHSEEGT-DSGVD 424
D+DV++ R K + V+ +K + L D + H E T G
Sbjct: 857 DIDVLLTR--RMGSKDASDGEDDETAGDVQDVKPQEVLAAFVDALKKEHYIEATLAQGAT 914
Query: 425 TYFGLC---------------TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+ G+ YP R R+D + + + L+ +TG+ N +R
Sbjct: 915 KFMGVSRLKSYGYNTDSASPKMYPAR----RLDIRFVEPECFPAALLYFTGSKTFNVVMR 970
Query: 470 LLAESKGYRLDDTGLF 485
A + + L++ GLF
Sbjct: 971 AEAIKQNFVLNEYGLF 986
>gi|9631347|ref|NP_048188.1| ORF MSV117 putative DNA polymerase beta/AP endonuclease, similar to
Rattus norvegicus GB:M13962 and Caenorhabditis elegans
GB:Z47812 [Melanoplus sanguinipes entomopoxvirus]
gi|4049700|gb|AAC97660.1| ORF MSV117 putative DNA polymerase beta/AP endonuclease, similar to
Rattus norvegicus GB:M13962 and Caenorhabditis elegans
GB:Z47812 [Melanoplus sanguinipes entomopoxvirus]
Length = 603
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 60/351 (17%)
Query: 198 LNK-NITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-----------------KLPFKI 239
LNK I + + NIY L E++ +Y KAI I KL +
Sbjct: 288 LNKRKIIYMLHNIANIYEKLDENKYK-AYNKAINSIYEQGIIILKYNNTTINSPKLVDNM 346
Query: 240 ESA-DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 298
E+ + K +P IG S+ I I++ + +++ ++ + I+ V IGP TA+
Sbjct: 347 ETVISKYKDIPNIGDSISKKIYNIISN---TYIDNISNTKEYKYITELMNVLYIGPKTAK 403
Query: 299 KLYEKGHRTLDDL-KNEDSLTHS-QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
L KG +T+ DL KN+D +S Q++ ++Y+D +K I R + +E ++ + +
Sbjct: 404 NLISKGIKTIKDLKKNKDKYLNSQQQIAIEYYDKLKP-INRSFISNLESSIKLSPNK--- 459
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
E IL GSY RGK + D+D++I+ D L + K KE LR I +
Sbjct: 460 EWYIL--GSYARGKLTSKDIDILIVDFDIDE---ILKEIYKYAKEEAVLRHGKIMYS--- 511
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
G TYF + Y E + +TG+ N LR LA SK
Sbjct: 512 -GIFKKDKTYFLIDIYKTTESEKYTSIQ------------YFTGSKEFNIALRSLALSKD 558
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
RL+ ++ ++ + +EK++FD LG ++ P +R++
Sbjct: 559 IRLNQHEMY----------DLQTQKKYNIKSEKDIFDILGVKYVPPSKRDI 599
>gi|408406101|ref|YP_006864085.1| DNA polymerase X family [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366697|gb|AFU60427.1| DNA polymerase X family [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 589
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 71/333 (21%)
Query: 221 RSFSYYKAIPVIEKLPFKIE---SADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEHF 274
R+ +YY+A I LP + S + +KGL P IGK++ I+E + TGK+ LE
Sbjct: 43 RARAYYRAADTIASLPEDVAVMYSRNGIKGLLEIPSIGKAIAAKIEEYIKTGKVHTLEKM 102
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG---------- 324
+ + + L+G + G+GP T + LY+K +KN L + R G
Sbjct: 103 KAEIPINIDELYG-LEGVGPKTIRALYDKLQ-----VKNLADLEKAAREGRLRTVPGFTE 156
Query: 325 ------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII---LCGGSYRRGKASCGD 375
LK + +T RH + ++ L+++ + +L + + GS RR K + GD
Sbjct: 157 RKEQDVLKKIEFFRTGRGRHIIGEVYPLIKQIEKSLLQVAGVKNAVAAGSVRRMKETIGD 216
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG---TDSGVDTYFGLCTY 432
+D ++ D + F +K M ++E +F + SG+D
Sbjct: 217 IDYLVAASDPEPVMDFFTK-------MPEVQE--VFGRGPAKAFVRLTSGIDA------- 260
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
D V P + + L +TG+ + LR +A SKG RL++ G+F
Sbjct: 261 ---------DLLVVPEESWGSALQYFTGSKEHSVELRKIALSKGLRLNEWGVFKGEKRVA 311
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G E+EV+ LG W+ P R
Sbjct: 312 GA------------AEEEVYQALGLQWMPPEMR 332
>gi|401416300|ref|XP_003872645.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488869|emb|CBZ24119.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 673
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 155/409 (37%), Gaps = 131/409 (32%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 229
PD + + +IF +L I ALGE +S SY + +
Sbjct: 141 PDYRERVVQIFEQLTQINSALGERFKSQSYGRTVERFKRGDKVFQLLPPNLLPLPEDDPK 200
Query: 230 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 267
VIE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 201 KKAVIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 259
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD------------DLKNE 314
L +L H E +R I +V G+GP TA ++K RT+ D+ N+
Sbjct: 260 LEELHHQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYDIRTVAQLRDYAIKAGELDMSNK 319
Query: 315 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 357
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 320 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 379
Query: 358 -VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----------------FLSKYVKKLK 400
+++C GSYRR S GD+DV+I H + G L ++ LK
Sbjct: 380 YELVVC-GSYRRQVESAGDIDVLITHKRSTTEGGGGSSSSSGRPLLPPSEVLGAFLAGLK 438
Query: 401 EMKFLREDLIFSTHSEEGTDSGVDTYFGLC-------------TYPGRELR--------- 438
K++ L G + GLC T G+ +
Sbjct: 439 ADKYIEATLA----------QGPTKFMGLCRLRAVGTESVTASTGKGKAAKANGNASTKF 488
Query: 439 --HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
R+D + D + ++ +TG+ N +R A K L++ GLF
Sbjct: 489 RARRLDVRYVDSDSFPAAMLYFTGSKNFNVIMRSEAIKKHCILNEYGLF 537
>gi|73669152|ref|YP_305167.1| bifunctional DNA polymerase X family protein/ histidinol
phosphatase [Methanosarcina barkeri str. Fusaro]
gi|72396314|gb|AAZ70587.1| DNA polymerase X family / putative histidinol phosphatase
[Methanosarcina barkeri str. Fusaro]
Length = 584
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 145/354 (40%), Gaps = 58/354 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 252
N+ I E+F + +I + + +Y KA +IE L IE +G +PGIG
Sbjct: 3 NREIAELFYEAADILEYQQVEWKPRAYRKAAQMIENLGEDIEKIYAREGKAGLTKIPGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 311
+S+ DHI E + T K+ K E ++ T L E+ G+G +KL + G RTL DL
Sbjct: 63 ESIADHISEYLETNKVEKFEKLKEKAPSGTAELM-EIRGLGAKKIKKLSDTLGVRTLSDL 121
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIILC--- 362
KN +RL G K ++ I ++E L KA +EV+ + C
Sbjct: 122 KNAIIAHRLKRLEGFGEKSEKNLARAIEQYEKSHARLALGKALPLADEVISALKAQCESR 181
Query: 363 -----------GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
GS RR K + GD+D++ ++ K E L+
Sbjct: 182 TSKIDLSKIIYTGSLRRLKETIGDIDILAEAEKEEALKVMDCFVSLPDVEQVILKGSTKS 241
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
S EGT ID +V P + Y L +TG+ N LR +
Sbjct: 242 SVILREGT--------------------AIDLRVVPPESYGAALQYFTGSKEHNIELRNV 281
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A GY+L + GL+ GKQ + +E E+++ LG ++ P R
Sbjct: 282 AIKNGYKLSEYGLY---LKESGKQ-------IAGSSEAEIYERLGLAYIPPELR 325
>gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23]
gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23]
Length = 575
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 160/357 (44%), Gaps = 73/357 (20%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 251
N+ + IF ++ + LG++ R +YY+A + L IE + KG LPGI
Sbjct: 3 NQELARIFEEIGLMGEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAK-KGKEALLELPGI 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 309
G + D I E + TG++ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLADKILEFLATGRVKK--HEELSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLE 119
Query: 310 DLKNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMER-LLQKAGEE 353
LK ++L L LK F K R P V + R LL++
Sbjct: 120 KLK--EALERGDLLRLKGFGAKKAERIKEGLLLAQAASKRRPLGAVLSLARNLLEQI--R 175
Query: 354 VLPEV--IILCGGSYRRGKASCGDLDVVI--MHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
LP V LC GS RR K + GDLD ++ + P+R GF++ + +KE
Sbjct: 176 ALPGVKKAELC-GSARRYKDTVGDLDYLVASLEPERVV-AGFVA--LPGVKE-------- 223
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+++ E T V GL ++D +V P + Y GL TG+ + RLR
Sbjct: 224 VYAKGRERAT---VFLKNGL----------QVDLRVVPEESYGAGLQYLTGSKEHSIRLR 270
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
LA+ G +L + G+F R + +TE+ V+ LG P++ P R
Sbjct: 271 ALAQGMGLKLSEYGVF------------RGEERIAGETEEGVYAALGLPFIPPPLRE 315
>gi|297190382|ref|ZP_06907780.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197720406|gb|EDY64314.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 575
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 56/329 (17%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
GE ++ +Y KA + P + D ++ +P +G+S+ D I E + TG++S +E
Sbjct: 24 GEAFKARAYEKAARAVGGFPTDVSKLDAKGLREIPNVGRSVADKIVEYLRTGRMSVVEEA 83
Query: 275 EKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRL-GLKYFDDIK 332
L + G+GP A LYE+ ++D L + H +RL LK F +
Sbjct: 84 RASVPAGVRELI-MIPGLGPRKAMVLYEELEVASVDQLLDA---IHKERLRDLKGFGERT 139
Query: 333 TRIPRHEVEQME-----RLLQKAGEEVLPEVI---------ILC--GGSYRRGKASCGDL 376
H + ++ R+L A +V +++ + C GS RR K + GD+
Sbjct: 140 ESNLLHGISVLQKAGEGRILVSAAMDVAEQLVAELSDIRGCVRCSYAGSLRRMKETIGDV 199
Query: 377 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE 436
D+++ R+S + ++ L + E + E+ T V T GL
Sbjct: 200 DILVAA--RRS-----APFMDALTALPHTAEVI---ARGEKKTS--VRTTTGL------- 240
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 496
++D +V P + GL +TG+ N R R +A +G +L + GLF A G
Sbjct: 241 ---QVDLRVLPPASWGAGLQYFTGSKAHNIRTRAIAVRQGLKLSEYGLFDAESGE----- 292
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHER 525
S+ TE+E++D LG PW+ P R
Sbjct: 293 -----SITSGTEEEIYDRLGLPWIPPTLR 316
>gi|134106753|ref|XP_777918.1| hypothetical protein CNBA3870 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260618|gb|EAL23271.1| hypothetical protein CNBA3870 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 264
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 34/256 (13%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 315
I ++VT + +LE D+K + + F + G G A+ E+G TL+DL +
Sbjct: 15 IYDLVTKKFVPRLEAL--DDKWKAMVKFNRIHGFGKIRARAFAEEGIETLNDLMIAEGGR 72
Query: 316 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
S++ +Q+L ++Y +++ IPR EVE+ + +++ A P++ GSYRRG+
Sbjct: 73 FSISEAQKLAIQYHEEMDVMIPRAEVEEFDGIIKDALRREDPKLNFAIMGSYRRGENLSS 132
Query: 375 DLDVVIMHPD------------RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
D+DVV+ H + +SK V L + IFS G
Sbjct: 133 DMDVVVWHESYVKKEKEKKRARKADPNSLMSKIVAALVSANIISPAKIFS--------QG 184
Query: 423 VDTYFGLCTYPGRELRHR-IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 481
L P HR ID ++ P + + L+ TG+ L + +R A +G+ L++
Sbjct: 185 ERKVLALTQLPKANSLHRQIDLRLCPIESLPYMLLGNTGDGKLMKIMRWRAIQRGWVLNE 244
Query: 482 TGLFPATYGSGGKQGV 497
Y G + GV
Sbjct: 245 -------YAMGERDGV 253
>gi|333987104|ref|YP_004519711.1| PHP domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333825248|gb|AEG17910.1| PHP domain protein [Methanobacterium sp. SWAN-1]
Length = 566
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 156/349 (44%), Gaps = 63/349 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 255
N+ + I ++ ++ G D R+ +Y +A +E L I+ +++ LPGIGK++
Sbjct: 3 NRKVATILNRIADLLEMDGVDFRTKAYRRAAHTVEFLSRDIQDVRNEGKLEELPGIGKNL 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 314
I+EI+ TG L E+ +K+ V +L + G+GP + + LY E G + L+DL+
Sbjct: 63 SKKIEEIIDTGSLEYYENLKKEFPVDFEALVA-IEGLGPKSIKLLYDELGIKNLEDLEK- 120
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC------------ 362
++R ++ + + +E ++ + G +L +++ L
Sbjct: 121 ----AAKRHRIRRLKGMGDKKEHQIIENLKFARKTTGRTLLGQILPLAEGIKKELEKSDV 176
Query: 363 -----GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM-KFLREDLIFSTHSE 416
GS RR + + GD+D++++ K + Y + E+ K + + L+ ST
Sbjct: 177 SDVEIAGSIRRMQETVGDIDILVVTDKPKQ----VMDYFTSMDEVGKIIVKGLLKSTIR- 231
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
+GV ++D +V+ D + L+ +TG+ N +R +A G
Sbjct: 232 --LKNGV----------------QVDIRVFNEDSFGSALLYFTGSKETNIDMRKIAIRNG 273
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+L++ G++ GK TE+EVF LG ++EP R
Sbjct: 274 LKLNEYGVYMDEKQIAGK------------TEEEVFRKLGMQYIEPELR 310
>gi|260837479|ref|XP_002613731.1| hypothetical protein BRAFLDRAFT_123875 [Branchiostoma floridae]
gi|229299120|gb|EEN69740.1| hypothetical protein BRAFLDRAFT_123875 [Branchiostoma floridae]
Length = 186
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 68/226 (30%)
Query: 308 LDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 366
L DL KN L H Q+LGLKYF+D + RIPR E+ +M+ PE+
Sbjct: 19 LTDLRKNPGKLNHHQQLGLKYFEDFEKRIPREEMLEMQ-----------PEL-------- 59
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
L + V L++ KF+ + + G +
Sbjct: 60 -------------------------LKQVVHHLEKSKFVVDTISL----------GDTKF 84
Query: 427 FGLCTYPG------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 480
G+C P R R RID ++ P D Y G++ +TG+DV N+++R A +G+ L+
Sbjct: 85 MGVCRLPAGKGSKERTFR-RIDIRLLPNDQYYCGVLYFTGSDVFNKKMRAHALEQGFTLN 143
Query: 481 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+ + P GS G G +L +E++VFD +G +L+P +R+
Sbjct: 144 EYTIRPL--GSTGVPG----EALPVSSEEDVFDIIGMKYLKPSQRS 183
>gi|219850796|ref|YP_002465228.1| PHP domain-containing protein [Methanosphaerula palustris E1-9c]
gi|219545055|gb|ACL15505.1| PHP domain protein [Methanosphaerula palustris E1-9c]
Length = 562
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 144/324 (44%), Gaps = 54/324 (16%)
Query: 217 GEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 273
GED R ++ +A IE L P + +QV +PGIG I+E+ + S L+
Sbjct: 23 GEDPFRVRAFQRAAMAIEGLGEPVCSMAPEQVLAVPGIGPHTAAQIRELCAGEESSLLQD 82
Query: 274 FEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHS----QRLGLKYF 328
++ I+L E+ +GP T +L+ E G T++DL+ +L H + G K
Sbjct: 83 LQQSIPASVIALL-ELDQVGPKTVHRLWHELGISTIEDLEKA-ALAHQVSTLKGFGAKKE 140
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-------CGGSYRRGKASCGDLDVVIM 381
+++ I RH R+ + A E VL EV L GSYRRG+A+ GD+D+V
Sbjct: 141 EELVKAIARHR-RSTGRMTRVAAEAVLREVTALLVEGTYTIAGSYRRGRATIGDIDIVST 199
Query: 382 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRI 441
+ + +S L +++I E+ T R + R+
Sbjct: 200 EAPAEVNSRLVS-----------LADEVI--DQGEKRTSI-------------RVMGQRV 233
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 501
D + D L+ TG+ N +LR +A S G+RL++ G+ T G+ RT
Sbjct: 234 DVRFCTPDQCGPMLLYLTGSKDFNIKLREIALSAGWRLNEYGVEERTTGA-------HRT 286
Query: 502 SLKFDTEKEVFDFLGFPWLEPHER 525
+ TE+E+F LG + P R
Sbjct: 287 AA---TEEEIFSMLGMDPVPPELR 307
>gi|402878108|ref|XP_003902745.1| PREDICTED: DNA polymerase beta-like [Papio anubis]
Length = 164
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 25/167 (14%)
Query: 369 GKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD 424
G S GD+DV++ HP S L + V++L++++F+ + L G
Sbjct: 13 GAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVRFITDTL----------SKGET 62
Query: 425 TYFGLCTYPGR----ELRHR-IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+ G+C P + E HR ID ++ P+D Y G++ +TG+D+ N+ +R A KG+ +
Sbjct: 63 KFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTI 122
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
++ + P G GV A L D+EK++FD++ + + EP +R+
Sbjct: 123 NEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 163
>gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter
mediatlanticus TB-2]
gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter
mediatlanticus TB-2]
Length = 567
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 150/346 (43%), Gaps = 54/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGK 253
NK I I K ++ GE+ + +Y A ++E ++ + LPGIGK
Sbjct: 4 NKEIASILSKTADLLEIKGENPFKVRAYRNAARIVENSSKDFNKLVKEGFDLTRLPGIGK 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLK 312
+ I+EIV TGK KLE +K+ + + + G+GP +++Y+ T LD+LK
Sbjct: 64 DLSLFIKEIVETGKFHKLEELQKEIPPGLVDMLS-IEGLGPKRIRQIYDAFKVTSLDELK 122
Query: 313 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 359
+L G+K R +VE++ ++K + I
Sbjct: 123 KYAESGELDKLPGFGPKLIEKILKGVKQIKKAGIRFLWADVEEIAEDIRKYLLKFRGVEI 182
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GSYRR K + GDLD++++ D + KY K++KE+ HS T
Sbjct: 183 VEIAGSYRRKKETVGDLDILVVAEDYPKVSEYFIKY-KRVKEV-----------HSAGLT 230
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
S V + +L ++D + ++ Y L +TG+ N +R LA KG ++
Sbjct: 231 RSTV--------FLDNDL--QVDLRAVSKESYGAALHYFTGSKAHNIEIRKLAIEKGLKV 280
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G++ GK +E+EV+ +G ++EP R
Sbjct: 281 NEYGVYRGDERIAGK------------SEEEVYKAVGLCFIEPELR 314
>gi|390466524|ref|XP_002751420.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 3 [Callithrix
jacchus]
Length = 302
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSRV 212
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRSSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 318 THSQRLG 324
T Q++G
Sbjct: 273 TQQQKVG 279
>gi|375145599|ref|YP_005008040.1| PHP domain-containing protein [Niastella koreensis GR20-10]
gi|361059645|gb|AEV98636.1| PHP domain protein [Niastella koreensis GR20-10]
Length = 596
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 60/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRR--SFSYYKAIPVIEKLPFKIE----SADQVKGLPGIG 252
N + IF ++ + YR LG R +Y A I L I D + L GIG
Sbjct: 14 NPELAAIFHQMASCYRYLGAKHRFRVMAYDSANRTINNLKNDISEYAGKNDGLHELKGIG 73
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+S+ + I E + TGK++ + +K + + L ++ G+GPAT + L+ + H +
Sbjct: 74 ESIGEKIIEYLHTGKINTFDQLKKKVPLGLLELM-DINGLGPATVKTLHRRLH-----IN 127
Query: 313 NEDSLTHSQRLG----LKYF-----DDIKTRIPRHEVEQMERLL---QKAGEEVLPEVII 360
N++ L + G LK F ++IK + + LL Q+ GE++L +V+
Sbjct: 128 NKEELIAAIEAGKLENLKGFASKKVENIKRGLKLFKQAHSRMLLWDAQRTGEDILQQVLQ 187
Query: 361 LCG-------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
L G GS RR K + GD+D+V D+K K ++++ + + L + +
Sbjct: 188 LPGIKKAALAGSLRRKKETIGDIDIVAT-ADKKDWKKIVTRFASLPQTDRVLAKGDTRAA 246
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
+G+ + ++D ++ Y L+ +TG+ N LR LA
Sbjct: 247 IVLKGSGT------------------QVDLRLVQAHEYGAALLYFTGSKEHNIALRALAR 288
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++GY+L++ G+F A L TE+E++ ++ P R
Sbjct: 289 AQGYKLNEYGVFDAV----------TDRKLPGTTEEEIYRLFDLQFIPPELR 330
>gi|355572672|ref|ZP_09043760.1| PHP domain protein [Methanolinea tarda NOBI-1]
gi|354824363|gb|EHF08615.1| PHP domain protein [Methanolinea tarda NOBI-1]
Length = 571
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 155/352 (44%), Gaps = 64/352 (18%)
Query: 194 NPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPG 250
NP N+ + E + I L E+ + +Y +A IE+L P S ++++ +PG
Sbjct: 9 NPEMSNREVAEKLSLMGEILEILDENPFKVRAYRRAAESIERLGVPVGNLSPEELEAVPG 68
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD 309
IG ++ ++EI+ TG +LE + + + G+GP T + L++K G +++D
Sbjct: 69 IGTAIAKKVREIIATGTFHELEEARSSVPASLVEMLA-LDGVGPKTIKTLWKKLGIQSID 127
Query: 310 DLKNEDSLTHSQR----LGLK----YFDDIKT-RIPRHEVEQMERLLQKAGEE----VLP 356
DL+ + H R G + + + I+ R PR +M RL E V
Sbjct: 128 DLERA-ARGHRIRAVRGFGPRKEEAFLEAIENYRQPR---ARMTRLFADQVIEGIRGVFA 183
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
E + GSYRR K++ GD+D+V + P S +++++
Sbjct: 184 EGTFVVAGSYRRKKSTIGDIDIVTVDSPPSVNS----------RIRQI------------ 221
Query: 415 SEEGTDSG-VDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
+EE D G T F R + RID + R+ L+ TG+ N RLR +A
Sbjct: 222 AEEVIDEGDKKTSF-------RFKKTRIDVRFIERNRCGAMLLYLTGSKAFNIRLREIAL 274
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+G +L++ G+ A G F E+E+F FLG ++ P R
Sbjct: 275 ERGLKLNEYGIEDAGRGK----------VHSFAREEEIFSFLGMDYIVPELR 316
>gi|381190731|ref|ZP_09898248.1| DNA-dependent DNA polymerase beta chain [Thermus sp. RL]
gi|380451440|gb|EIA39047.1| DNA-dependent DNA polymerase beta chain [Thermus sp. RL]
Length = 575
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 160/352 (45%), Gaps = 63/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 251
N+ + IF ++ + LG++ R +Y++A + L IE + KG LPGI
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAE-KGKEALLELPGI 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 309
G + + I E + TG+++K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLAEKILEFLKTGRIAK--HEELAQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLE 119
Query: 310 DLK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLP 356
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 120 KLKAALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LP 178
Query: 357 EV--IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V LC GS RR K + GDLD ++ S+ +++ E F+R + +
Sbjct: 179 GVERAELC-GSARRYKDTVGDLDFLVA-----------SREGERVVE-GFVRLPQVKEXY 225
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
++ + V GL ++D +V P + Y GL TG+ + RLR LA+
Sbjct: 226 AKGKERATVFLNNGL----------QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQE 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG +L + G+F R L +TE+ V+ LG P++ P R
Sbjct: 276 KGLKLSEYGVF------------RGEKRLAGETEEGVYAALGLPFIPPPLRE 315
>gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus
SA-01]
gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01]
Length = 575
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 162/353 (45%), Gaps = 65/353 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA-----DQVKGLPGIG 252
N+ + +F ++ + LG++ R +YY+A + L IE + + LPGIG
Sbjct: 3 NQELARLFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEVAKGGREALLALPGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLY-EKGHRTLDD 310
+ + I E + TG++ K H E E+V + + EV G+GP TA++LY E G +L+
Sbjct: 63 PDLAEKILEFLKTGEIKK--HRELAERVPKGVLAVMEVPGVGPKTARQLYDELGIDSLEK 120
Query: 311 LKNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMERLLQKAGEEVL 355
L+ ++L L LK F K R P V + R L A E L
Sbjct: 121 LR--EALDRGDLLRLKGFGQKKAERIREGLALVQVAGKRRPLGAVLSLARNLLAAIRE-L 177
Query: 356 PEV--IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
P V LC GS RR K + GDLD ++ + + V+ ++ ++E +++
Sbjct: 178 PGVERAELC-GSARRYKDTVGDLDYLVASERSE-------EVVRAFVKLPQVKE--VYAQ 227
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
E T V GL ++D +V P + + GL TG+ + RLR LA+
Sbjct: 228 GKERAT---VFLKNGL----------QVDLRVVPPESWGSGLQYLTGSKEHSIRLRSLAQ 274
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
KG +L + G+F GG++ L +TE+ V++ LG P++ P R
Sbjct: 275 EKGLKLSEYGVF-----RGGER-------LAGETEEGVYEALGLPFIPPALRE 315
>gi|302039123|ref|YP_003799445.1| putative DNA-directed DNA polymerase [Candidatus Nitrospira
defluvii]
gi|300607187|emb|CBK43520.1| putative DNA-directed DNA polymerase, family X, modulated with
phosphoesterase domain [Candidatus Nitrospira defluvii]
Length = 576
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 62/350 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGK 253
N + F ++ ++ G + R +Y A + LP ++ + + GLPGIG
Sbjct: 5 NAEVATAFEEMADLLEIEGANPFRVRAYRFAARTLRDLPAEVGEMVAKGEDLTGLPGIGD 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP---------------ATAQ 298
+ I+EI++TG + +E K T++ + G+GP + Q
Sbjct: 65 DLAGKIKEILSTGTAAAIEAQRKRVPA-TVTELLRIPGLGPKRVKTLTQELKIRSPSELQ 123
Query: 299 KLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 355
K ++G RTL K E + + L +K + E + L E++
Sbjct: 124 KAAQEGRVRTLAGFGEKTEQHILAALAARLAEAPRVKRAVAIPYAEALVAYL----EQLS 179
Query: 356 PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
++ GSYRRG + GDLD++ + P + Y +E++ D++ H
Sbjct: 180 GVGRVMAAGSYRRGLETIGDLDILAVAPAGRPVTDRFVAY----QEVR----DVL--AHG 229
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
E T + V GL ++D +V P++ Y L+ +TG+ N LR LA+ +
Sbjct: 230 E--TKASVRLQSGL----------QVDLRVVPQESYGAALLYFTGSKSHNVVLRQLAQQR 277
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G +L++ GLF R T + +TE+ V+ LG PW+ P R
Sbjct: 278 GLKLNEYGLF------------RGDTRVAGETEESVYAALGLPWIPPELR 315
>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
Length = 579
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 147/334 (44%), Gaps = 67/334 (20%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
G R+ SY KA + P + D+ ++ +PG+G S + I E + +G++ LE
Sbjct: 24 GNAFRARSYEKAARSVGGYPGDLAHLDEAGLRAIPGVGDSTAEKISEYLASGRMEALESL 83
Query: 275 EKD--EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLKYF 328
VR ++ ++ G+GP TA LY K G +++D+L+ + L LG K
Sbjct: 84 RAKIPPGVREVT---QIPGVGPKTAVLLYRKLGIKSVDELRKAADAGKLKGLPGLGEKTV 140
Query: 329 DDIKTRIPRHEVEQMER-----LLQKA---GEEVLPEVIILCG-------GSYRRGKASC 373
++I RH +EQ+ + LL A E+++ E+ + G GS RR + +
Sbjct: 141 ENI-----RHGIEQLSQASGRTLLSIALDLAEDLVAELGAVPGCKKCDYAGSLRRMRETV 195
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS--THSEEGTDSGVDTYFGLCT 431
GD+D++ D ++ + + + D+I S T + TD G+
Sbjct: 196 GDIDILATAKDSAP---LMAALLARPEV-----ADVIGSGTTKTSIRTDKGL-------- 239
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
++D +V + L+ +TG+ N +LR A +G +L + GLF G
Sbjct: 240 --------QVDLRVVQPAEWGAALVYFTGSRAHNIKLRGRAVKEGLKLSEYGLFDVESGK 291
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L TEKEV+ LG PW+ P R
Sbjct: 292 ----------KLASRTEKEVYAALGLPWIPPTLR 315
>gi|374851400|dbj|BAL54361.1| phosphotransferase domain-containing protein [uncultured
Chloroflexi bacterium]
Length = 575
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 53/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 254
N+ + +F +L ++ GE + +Y + +E LPF+ + Q ++ +PG+G++
Sbjct: 3 NRQLAAVFRRLADLLEIRGEVVYKVLAYRRVADSLEALPFEAQRYWQEGRLREIPGVGEA 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKD------EKVRTISL----FGEVW-GIGPATAQKLYEK 303
+++ + E++ TG+L LE E + E +R L G +W +G AT ++L E
Sbjct: 63 IEEKLDELLRTGRLGFLERLEAEVPPTLTEWLRVPGLGPKRVGTIWRALGIATLEELEEA 122
Query: 304 GHR-TLDDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEVI- 359
+ L L + T + L GL+ RIP + + ER+L++ +P V+
Sbjct: 123 ARQGRLRHLPGFGARTEANILAGLEALKRSHGRIPLGQALPLAERILEELRH--VPGVVR 180
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GS RR +++ GD+D++ SH L + F+R D + ++ T
Sbjct: 181 VEMAGSLRRMRSTVGDIDLLAA----ASHPEALME--------AFVRLDGVVRILAQGET 228
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
S V+ + GL R V+P + + TG+ N RLR A ++G+ L
Sbjct: 229 KSSVEFFDGL----------RAQLWVHPPERFGSAWQYATGSKDHNVRLRERALARGFSL 278
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ L + G + E+EV+ LG PW+ P R
Sbjct: 279 SEHALTRLSDG----------VEILCANEEEVYAALGLPWIPPELR 314
>gi|221505607|gb|EEE31252.1| DNA polymerase lambda, putative [Toxoplasma gondii VEG]
Length = 1095
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 57/201 (28%)
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH------ 414
+CG SYRRGKA CGD+D++++ D +G L V +L L + L+ +
Sbjct: 754 VCG-SYRRGKAECGDIDILLIRRD-DVPEGLLQHVVARLTSCGLLVDHLLLNAAANSHFD 811
Query: 415 ---------------------------SEEGTD----------SGVDTYFGLCTYP---- 433
SEE + SG + Y G+C +P
Sbjct: 812 TAGRSARAQGERSKEPSVASERRGRKLSEEDKEAASKMRSSRHSGAELYCGVCVWPPWPT 871
Query: 434 --------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
G L RID K+YP A+ L+ +TG NR +RL A+++ LDDTG +
Sbjct: 872 DGNAIRFVGPRLSRRIDIKIYPERSRAYALLYFTGAAQFNRSMRLWAKNRSLLLDDTGCY 931
Query: 486 PATYGSGGKQGVRARTSLKFD 506
P G+ Q +A ++ D
Sbjct: 932 PRGLGTEALQRRKASRKVQDD 952
>gi|156848274|ref|XP_001647019.1| hypothetical protein Kpol_1050p18 [Vanderwaltozyma polyspora DSM
70294]
gi|156117702|gb|EDO19161.1| hypothetical protein Kpol_1050p18 [Vanderwaltozyma polyspora DSM
70294]
Length = 596
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQD 257
N I KL Y+ G+ R+ SY AI I+K I S Q K +P IG S+
Sbjct: 215 NDRIVNPLAKLARKYKVEGDTFRARSYNLAILSIDKYTLPITSGIQAQKEIPNIGPSIAK 274
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL----YEKGHRTLDDLKN 313
IQ I+ TG L LE + E+ ++ F G+G TA++ + L+ N
Sbjct: 275 KIQRILDTGTLPGLE--QASEQFDSLQYFSTCHGVGSETAKRWNSLKLDSFKDVLEKFPN 332
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
E ++ G Y++D + +IPR + ++++ + P+ + GS+ RG C
Sbjct: 333 EFAVEWPILFGWSYYEDWQKKIPRSVCAKYLQIVEDELFLLDPDFKVELQGSFNRGLPEC 392
Query: 374 GDLDVVIMHP 383
GDLD++ P
Sbjct: 393 GDLDLLFYKP 402
>gi|383788361|ref|YP_005472930.1| putative DNA polymerase family X [Caldisericum exile AZM16c01]
gi|381363998|dbj|BAL80827.1| putative DNA polymerase family X [Caldisericum exile AZM16c01]
Length = 574
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 54/347 (15%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 254
NK + E F +L + GE+ + +Y +A VIE L IE D++ G+ G+GKS
Sbjct: 3 NKEVAEKFYELAEVAELAGENPFKVKAYLEAARVIENLTIPIEDLAKEDKLDGIKGVGKS 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK- 312
+ + I+E + TGK++KLE +K + L +V G+G + LYEK G + L+DL+
Sbjct: 63 IAEKIKEYLETGKITKLEELKKVVPEGLLEL-EKVKGLGAKRVKILYEKLGIKNLEDLEK 121
Query: 313 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI----------- 359
E + + G K I I ++ +R L + ++
Sbjct: 122 AAKEHKIRDLEGFGEKTEQKILEGIKSLRDKRTDRFLIGIALPIAESIVNLLSKNTPIEK 181
Query: 360 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
++C GS RR K + GD+D+++ + F+ Y ++ F++E L ++
Sbjct: 182 HMIC-GSLRRMKDTIGDIDILVTS----KNPSFVMDY---FVQIPFVKEVL-----AKGD 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
T S + T G+ ++D +V D + + +TG+ N RLR +A K +
Sbjct: 229 TKSSIITQEGI----------QVDLRVVENDSFGAAIQYFTGSKNHNVRLREIAIKKNLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ G+F + GV+ E +V++ L W+ P R
Sbjct: 279 LNEYGVFRLD-DNAIIAGVK---------ETDVYEALDLDWIPPEMR 315
>gi|410670506|ref|YP_006922877.1| PHP domain-containing protein [Methanolobus psychrophilus R15]
gi|409169634|gb|AFV23509.1| PHP domain-containing protein [Methanolobus psychrophilus R15]
Length = 586
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 76/365 (20%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 254
N I +I ++ + GED + +Y KA I+KL I+S Q + +PG+GK+
Sbjct: 3 NAEIADILSRMSRLLEFKGEDPFKIMAYEKAARSIKKLEMDIDSIHQEGHLSDVPGVGKA 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
++D I+E++TTG E + I + ++ GIGP TA+ LYE+ G ++ +L
Sbjct: 63 IEDKIKELLTTGTFEAYERILAEIPSGIIEIM-DISGIGPKTAKILYERLGIESIGELIK 121
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-------LPEVI------- 359
+ H R R+PR +Q ER+L+ A V P +
Sbjct: 122 A-AEEHRIR-----------RLPRMGPKQEERILKAARNRVQSSDFRRTPLAVATAIARQ 169
Query: 360 -------------ILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEMKFL 405
++ GS RR K + G++D+V + + K+ F+ +++K + +
Sbjct: 170 ITEELSASPYIDTVVPAGSLRRRKETVGNIDLVALSDEPEKAVDAFM--HLEKTAPVPEV 227
Query: 406 REDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW-TGNDVL 464
+ STH+ +SG+ R+D V R Y LI + TG+
Sbjct: 228 LDIYEGSTHAAIVHESGI----------------RVDLYVGSRG-YCGSLIQYLTGSKEH 270
Query: 465 NRRLRLLAESKGYRLDDTGLFPATYGSGGK----QGVRARTSLKFDTEKEVFDFLGFPWL 520
N L+ +A +KGY + +G S GK +G R + +F E E+++ LG +L
Sbjct: 271 NIHLQEVARAKGYTISKSGSI-----SKGKPVETEGPRNKAR-EFSNEAELYESLGLGYL 324
Query: 521 EPHER 525
+P R
Sbjct: 325 QPELR 329
>gi|221484420|gb|EEE22716.1| DNA polymerase lambda, putative [Toxoplasma gondii GT1]
Length = 1134
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 57/186 (30%)
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH------ 414
+CG SYRRGKA CGD+D++++ D +G L V +L L + L+ +
Sbjct: 753 VCG-SYRRGKAECGDIDILLIRRD-DVPEGLLQHVVARLTSCGLLVDHLLLNAAANSHFD 810
Query: 415 ---------------------------SEEGTD----------SGVDTYFGLCTYP---- 433
SEE + SG + Y G+C +P
Sbjct: 811 TAGRSARAQGERSKEPSVASERRGRKLSEEDKEAASKMRSSRHSGAELYCGVCVWPPWPT 870
Query: 434 --------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
G L RID K+YP A+ L+ +TG NR +RL A+++ LDDTG +
Sbjct: 871 DGNAIRFVGPRLSRRIDIKIYPERSRAYALLYFTGAAQFNRSMRLWAKNRSLLLDDTGCY 930
Query: 486 PATYGS 491
P G+
Sbjct: 931 PRGLGT 936
>gi|330506782|ref|YP_004383210.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
GP6]
gi|328927590|gb|AEB67392.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
GP6]
Length = 577
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 149/346 (43%), Gaps = 53/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 254
N+ I I ++ + E+R + +Y +A IE L IE +++G+PG+GK+
Sbjct: 7 NREIAGILYQMAELLELHAENRFKIIAYSRAARAIESLTEDIEQVCRDGRLEGIPGVGKA 66
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLKN 313
+ + I+E + TG++ + D L ++ G+GP T L+EK T LD+L+
Sbjct: 67 IAEKIKEYLRTGRIQSHQDLLADTPQGLAELL-QISGLGPKTVFMLHEKLDITNLDELEK 125
Query: 314 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------- 363
E + R+G+ +I I R+ ++ R+L E ++ E++ G
Sbjct: 126 AAREHRIRRLPRMGVVREKNILKSIERYR-KRSNRILYSTAESIVDEILTYLGGIEGLEH 184
Query: 364 ----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
GSYRR K + GD+D++ + ++ +VK M + E + + + +
Sbjct: 185 ATAAGSYRRRKETVGDIDILATAARPEE---IVAAFVK----MPLVEE--VLAKGPTKAS 235
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
DT ++D ++ Y L +TG+ N +R LA +GY L
Sbjct: 236 VIMNDTI-------------QVDLRIVEHRSYGTVLQYFTGSKEHNVSMRQLALDRGYSL 282
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ L G L FD E+EV+ LG ++ P R
Sbjct: 283 SEYSLTRLANGQ----------DLFFDQEEEVYQALGLQYIPPELR 318
>gi|47221680|emb|CAG10152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 407
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 202 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS------- 254
+ + F L Y + R ++ +A V++ LP + S + LP +G
Sbjct: 8 LQDAFEVLAECYEFNQMEGRCLAFRRAASVLKSLPRVLSSLEDTHHLPCLGDHAKAIIDL 67
Query: 255 ---------------MQDHIQ------EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 293
M +H + E++ G+ ++ DE+ +T+ LF V+G+G
Sbjct: 68 RHPPSTLMEDLLADFMPEHSEDFKVAPELLQHGRAFDVQKVLSDERYQTLKLFTSVFGVG 127
Query: 294 PATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 351
P TA+K Y G R + + + S L H Q+ G +++DI + + E + +++ +
Sbjct: 128 PKTAEKWYRTGLRAFEHILADRSIHLNHMQQNGFLHYEDISRAVSKAEARALTKVIDEVV 187
Query: 352 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
+ P+ I+ G +RRGK D+D++ + + L +K L+
Sbjct: 188 HAITPDAIVALTGGFRRGKEFGHDVDIIFTTLEVGKEENLLLDVIKSLE 236
>gi|194333788|ref|YP_002015648.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM 271]
gi|194311606|gb|ACF46001.1| PHP domain protein [Prosthecochloris aestuarii DSM 271]
Length = 574
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 148/350 (42%), Gaps = 60/350 (17%)
Query: 198 LNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPG 250
+N +I IF K+ ++ L + R +Y A I L + AD V LPG
Sbjct: 4 VNADIETIFRKVADLLDILNANPFRIRAYRNAAATIAGLSRDV--ADMVSRNEDLTRLPG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHR 306
IG+ + I EIV TG L L+ EK+ + S E+ G+GP + LY+ +
Sbjct: 62 IGRDLSKKILEIVETGHLRFLDTLEKNAHA-SFSELMEIPGLGPRKVKALYDALDIRNIE 120
Query: 307 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG---EEVLPEVIILC- 362
L++ + + G K +I I R + E+ R+ +A E L + C
Sbjct: 121 ELEEAAEQGRIALVAGFGKKSQQNILKEIVRRK-ERSRRITYQAAMFAAEPLLSYLRACD 179
Query: 363 -------GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
GS+RR + + GDLD+++ +G + V+ F R D + S
Sbjct: 180 DITQVAIAGSFRRCRETIGDLDLLV-----TCRRG--ADAVRH-----FTRYDGVADILS 227
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
T S V + GL ++D +V P+ + L+ +TG+ N LR LA +
Sbjct: 228 SGNTRSSVVLHSGL----------QVDLRVVPQVSWGAALLYFTGSWQHNIALRKLAIGR 277
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G +L++ GLF GK +EKEV+ L P++ P R
Sbjct: 278 GLKLNEYGLFREHERIAGK------------SEKEVYACLDIPFIAPELR 315
>gi|406936466|gb|EKD70180.1| hypothetical protein ACD_46C00611G0005 [uncultured bacterium]
Length = 572
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 147/349 (42%), Gaps = 60/349 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N I IF K+ N+ GE+ R +Y A VI + + IE D + LPGIGK
Sbjct: 5 NTEIAAIFSKVANLLDIKGENPFRIRAYRNAARVIYGQSKSIAKMIEDNDDLTLLPGIGK 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ I+ IV TG+L L EK ++ ++ G+GP Q +Y K +T DLK
Sbjct: 65 DLAGKIKTIVQTGQLPLLTQMEK-RLPPVLNELMQIEGLGPRRIQIIYRKLKVKTSADLK 123
Query: 313 NEDSLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVIIL--------- 361
Q++ + D I +I R V Q + ++ A + + II
Sbjct: 124 LAIEKGRLQKMK-GFGDKIAQKILRGIEHVSQYSKRIKLADAFPIVDSIIHYLKQEKNIS 182
Query: 362 ---CGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
C GS+RR K + GDLD++ +P++ F+ D + + S+
Sbjct: 183 KVECAGSFRRRKETVGDLDILATGKNPEKIIQ--------------HFVEFDEVENILSK 228
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T S V G+ ++D +V Y L+ +TG+ N +R +A K
Sbjct: 229 GSTRSTVRLRSGI----------QVDLRVVAAKSYGAALLYFTGSKEHNIAIRRIALEKK 278
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F T G+ TE E + +G P+++P R
Sbjct: 279 LKINEYGVFKKTKQIAGQ------------TETESYRQVGLPYIDPELR 315
>gi|339435|gb|AAA61136.1| terminal deoxynucleotidyltransferase, partial [Homo sapiens]
Length = 238
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 35/246 (14%)
Query: 306 RTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 363
RTL ++++ SL T Q+ G Y++D+ + + R E E + L+++A LP+ +
Sbjct: 2 RTLSKVRSDKSLKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMT 61
Query: 364 GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS 421
G +RRGK D+D +I P + L + V L E K L DL+ ST + S
Sbjct: 62 GGFRRGKKMGHDVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPS 121
Query: 422 -GVDT--YFGLCTYPGRELRH------------------RIDFKVYPRDIYAFGLIAWTG 460
VD +F C + R R+D + P + AF L+ WTG
Sbjct: 122 RKVDALDHFQKCFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTG 181
Query: 461 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 520
+ R + LD+ L+ T R LK ++E+E+F LG ++
Sbjct: 182 SRFERDLRRYATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYI 231
Query: 521 EPHERN 526
EP ERN
Sbjct: 232 EPWERN 237
>gi|390603160|gb|EIN12552.1| Nucleotidyltransferase [Punctularia strigosozonata HHB-11173 SS5]
Length = 388
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 122/289 (42%), Gaps = 32/289 (11%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI----QEI---VTTGKLSKLEHFEK 276
++ AI I L I S +Q K L GIG + I QE+ V+ +
Sbjct: 22 AFKLAIRTINALEDPITSGEQAKDLRGIGPRIAARIDQFLQELNRDVSHESHHSSSAAAE 81
Query: 277 DEKV---RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN----EDSLTHSQRLGLKYFD 329
E V R ++ GIGP+ A+ L G ++ L+ ++ LT SQR+ L +
Sbjct: 82 SEDVIADRAAKELQQITGIGPSKARTLVAAGCTSIAQLRASPELKNKLTRSQRIALDFHG 141
Query: 330 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 389
+K + R + EQ +L++ ++ GSYRRG A D+D++I+ PD +
Sbjct: 142 QLKKGVTRAQSEQALKLVRMCVPSSCEAHLV---GSYRRGAAQPSDIDILILDPDMPAPS 198
Query: 390 GFLSKYVK--KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG-----------RE 436
+ + + + L E + E G + V GL + G
Sbjct: 199 SPIPQRASAGRRRPTGVLAETIKALERDESG--AAVTISGGLTQWQGIVRLNNDQHARTP 256
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
R+D VYP++ A L+A TG+ R R A +G L+D GL+
Sbjct: 257 AYRRMDIWVYPKECAAAALLARTGDVEFVRDTRERASRRGLHLNDYGLW 305
>gi|443926823|gb|ELU45383.1| fingers domain of DNA polymerase lambda domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 473
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN--EDS 316
I+E + TG +++ E+ + +SL +V G+G A A++ Y G R+L+DL+
Sbjct: 207 IEEYLKTGNIAEARKAAASERFQVLSLLTQVHGVGAAKAREHYAAGRRSLEDLRKFYRAK 266
Query: 317 LTHSQRLG----LKYFDDIKTRIPRHEVEQMER-LLQKAGEEVLPEVIILCGGSYRRGKA 371
+ LG L+ D++ T IPR EVE + + + L +CGG YRRGK
Sbjct: 267 VEAGTHLGIAAALELHDELNTTIPREEVEAIANGVFGELSAVQLGCEYTICGG-YRRGKP 325
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLK 400
D+D+V HP+ + + +K V +LK
Sbjct: 326 YSNDIDIVFTHPEVGTERHLCTKLVDRLK 354
>gi|307106980|gb|EFN55224.1| hypothetical protein CHLNCDRAFT_134478 [Chlorella variabilis]
Length = 666
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 156/398 (39%), Gaps = 93/398 (23%)
Query: 199 NKNITEIFGKLINIYRALGED--------------RRSFSYYKAIPVIEKLPFKIESADQ 244
N+ + + +L RAL +D R+ Y +A + +K++ +
Sbjct: 290 NEPVVKALSELSRYERALHDDYFTVQETGKQDQVNHRALRYSRAASAVRACAYKLQPNLR 349
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK-------DEKVR---------TISLFGE 288
LP +G I++I+ +G LE F + D K R T +LF
Sbjct: 350 GGQLPFVGDVTASQIKDILESGTCQALECFRRVADVAVTDSKGRRRRDSVGGATRALFHS 409
Query: 289 VWGIGPATAQKLYEKGHRTLDDLK------------NEDSLTHSQRLGLKYFDDI-KTRI 335
+ G+G A++ ++ G R +D++ LT QR L + D+ + I
Sbjct: 410 LPGVGVQAAKRWWDLGCRCFEDVELAAEPGGPLGQGGAFPLTRDQRFSLGHRGDLLEVAI 469
Query: 336 PRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS 393
P EV +M +Q+ E V + L GG R A+ D D + HP + +S
Sbjct: 470 P-GEVREMLVAVQQGLEAVSHPGWRVELVGGGRR--SAAAHDADFLATHPSQP-----VS 521
Query: 394 KYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAF 453
V++L++ L+ E G D +G+ ++R R+D + P D + F
Sbjct: 522 GVVRRLRDRLVAAGRLV---PPERGI-CWFDHIYGVFRTASGKVR-RMDVIIAPPDEFCF 576
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGL-------------------------FPAT 488
L+ W G+ R +R A+ +G L+ L +P
Sbjct: 577 ALVGWIGSRTYLRFMRAFAKDQGLYLNSHRLMQKQGNESFVVPDERSPLDKAGQERWPPG 636
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+G G + + E++VF+ L P+ EPHER+
Sbjct: 637 WGPG----------RRVECERDVFELLQVPYREPHERD 664
>gi|348029395|ref|YP_004872081.1| DNA polymerase X [Glaciecola nitratireducens FR1064]
gi|347946738|gb|AEP30088.1| DNA polymerase X [Glaciecola nitratireducens FR1064]
Length = 573
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 140/348 (40%), Gaps = 58/348 (16%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGK 253
N +I IF ++ +I G + R +Y KA + + + E + LP IG
Sbjct: 5 NNDIANIFEEIADILTLQGANFYRIRAYRKAAAQLRDMSVDVAEYVEKGQDLSQLPAIGT 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDL- 311
+ I EI+ G+ S LE + L + G+GP L + G T + L
Sbjct: 65 KLAQKIVEIIQQGRCSALETLREQSPFGLTELL-HIPGLGPKRVNALVHVLGVHTQEQLL 123
Query: 312 --KNEDSLTHSQRLGLKYFDDI----------KTRIPRHEVEQMERLLQKAGEEVLPEVI 359
+ ++ LG K +I KTR+ R +Q + +++
Sbjct: 124 QAAKDGRVSSVAGLGQKIQANIIHTIESNLKRKTRLSRAIAKQYAEPILAYLKQIQGVEH 183
Query: 360 ILCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ GSYRR K + GD+D+++ + D +H F+ D + S
Sbjct: 184 AVIAGSYRRCKETVGDIDILVTTGNEDSVTHA--------------FINYDQVRDVLSTG 229
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
T S V Y GL ++D +V P D Y L +TG+ N LRL A+++G
Sbjct: 230 PTRSSVILYSGL----------QVDLRVVPNDCYGAALYYFTGSRSHNIALRLRAKARGL 279
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G++ + + + +TE+ V + PW+ P R
Sbjct: 280 KINEYGVY------------KDKRHIAGETEESVLAAIDLPWIPPELR 315
>gi|390559470|ref|ZP_10243802.1| PHP domain protein [Nitrolancetus hollandicus Lb]
gi|390173984|emb|CCF83096.1| PHP domain protein [Nitrolancetus hollandicus Lb]
Length = 594
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 54/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 254
N + ++ + + GE R +Y +A I+ + ++S A +++ +PG+G S
Sbjct: 5 NHEVAQLLNGIAELLALKGETPFRIRAYTEAAQYIDTMTEDVDSLYQAGRLEDIPGVGAS 64
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
+ I E + TG S E + L EV GIGPA A L+ + G T+ L
Sbjct: 65 IATKIAEYLKTGHSSYYEQLRQQIPSSAAELL-EVPGIGPARAHLLFTRLGITTVRQLL- 122
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEV---EQMERLLQKAGEEVLPEVIILC-------- 362
+ + H R + + ++TRI R ++ +R+L A V EVI L
Sbjct: 123 QAAEAHQLRDLPGFGEQLETRIAREAARVTQRTQRMLLGAAVPVAEEVIQLLRDSSAVDA 182
Query: 363 ---GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
GS RR + + GD+D+++ S + + E F R ++ ++ T
Sbjct: 183 IDPAGSLRRMRETIGDIDILVA-----------SSRPETVVE-AFTRLPIVQEVLAKGIT 230
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+ T + ++D +V D Y L +TG+ N LR L KG++L
Sbjct: 231 RPSILTRANV----------QVDLRVIAPDEYGAALQYFTGSKAHNIALRSLVIEKGWKL 280
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ GLF +QG R + TE+E+++ LG W+ P R
Sbjct: 281 SEYGLF-------DQQGRR----IAGRTEQEIYEALGMDWMPPEIR 315
>gi|444319590|ref|XP_004180452.1| hypothetical protein TBLA_0D04370 [Tetrapisispora blattae CBS 6284]
gi|387513494|emb|CCH60933.1| hypothetical protein TBLA_0D04370 [Tetrapisispora blattae CBS 6284]
Length = 613
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIGKSMQD 257
N+ + + KL I+ G++ RS Y A + K P KI+SA + + +P IG S+
Sbjct: 225 NELLIKTLDKLSKIHTIRGDEFRSRGYKLAKISVSKYPHKIKSAKEAQEKIPHIGASIAK 284
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-LKNEDS 316
I+ ++ TGKL LE K E + F +GIGP TA+ +L++ LK
Sbjct: 285 KIETLLKTGKLPGLEIASKLESRK--EYFSSCYGIGPVTAENWDSLQINSLNEALKRFPK 342
Query: 317 LTH---SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+ S G KY++D +IPR E + +++++ + + + GS+RR +A C
Sbjct: 343 IFQHDWSILFGWKYYEDWNKKIPRSECVKHMQIIKEELKLLDDSIECEIQGSFRRNRALC 402
Query: 374 GDLDVV 379
GD+D++
Sbjct: 403 GDIDIL 408
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 432 YPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 491
YP R RIDF + + +TG+ NR +R +A SKG +L GL+
Sbjct: 531 YPCR----RIDFFICKWSEIGASKLHYTGSGEFNREVRKIAISKGMKLTQHGLY------ 580
Query: 492 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ L+ EK +FD L P++EP +R
Sbjct: 581 ------QNDILLESFNEKRIFDLLDIPFIEPPDR 608
>gi|237838031|ref|XP_002368313.1| hypothetical protein TGME49_088730 [Toxoplasma gondii ME49]
gi|211965977|gb|EEB01173.1| hypothetical protein TGME49_088730 [Toxoplasma gondii ME49]
Length = 1145
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 77/186 (41%), Gaps = 57/186 (30%)
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH------ 414
+CG SYRRGKA CGD+D++++ D +G L V +L L + L+ +
Sbjct: 754 VCG-SYRRGKAECGDIDILLIRRD-DVPEGLLQHVVARLTSCGLLVDHLLLNAAANSHFD 811
Query: 415 ---------------------------SEEGTD----------SGVDTYFGLCTYP---- 433
SEE + SG + Y G+C +P
Sbjct: 812 TAGRSARAQGERSKERSVASERRGRKLSEEDKEAASKMRSSRHSGAELYCGVCVWPPWPT 871
Query: 434 --------GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
G L RID K+YP A+ L+ +TG NR +RL A++ LDDTG +
Sbjct: 872 DGNATRFVGPRLSRRIDIKIYPERSRAYALLYFTGAAQFNRSMRLWAKNCCLLLDDTGCY 931
Query: 486 PATYGS 491
P G+
Sbjct: 932 PRGLGT 937
>gi|395850044|ref|XP_003797611.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Otolemur
garnettii]
Length = 454
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 23/224 (10%)
Query: 121 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEA-PNSPMSSESLTNTLSTASASP 179
+ E +H ++S E+ +Q T A SE P + + LT +L+ P
Sbjct: 61 ACSSEVTHIVMEQTSAEEAVCWQEHRA----TAAPSECTPATLLDISWLTESLAAGQPVP 116
Query: 180 DFSSHHI-------TDPSLLYNPPDLNKNITEIFGKLINIYRAL----------GEDRRS 222
S H + PS ++ P + T + I++ AL G + S
Sbjct: 117 MESRHRLEVAEPRKAPPSSIWMPAYACQRPTPLTHHNISLSEALETLAEAAGFEGREGHS 176
Query: 223 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282
++ +A V+ LP + + Q++GLP G+ +QE++ G ++E E+ +T
Sbjct: 177 LTFLRAASVLRALPRPVVALTQLRGLPHFGEHSFRVVQELLEHGVCEEVERVRHSERFQT 236
Query: 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGL 325
+ LF +++G+G TA + Y++G RTLDDL+ + LT Q+ L
Sbjct: 237 MKLFTQIFGVGVRTADRWYQEGLRTLDDLREQPQRLTQQQKAVL 280
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVR 498
R+D V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 376 RVDLVVAPISQFPFALLGWTGSKLFQRELRRFSRKEKGLCLNSHGLF----------NPE 425
Query: 499 ARTSLKFDTEKEVFDFLGFPWLEPHERN 526
T +E+++F LG +L P +RN
Sbjct: 426 QNTVFHVASEEDIFRHLGLEYLPPEQRN 453
>gi|366162711|ref|ZP_09462466.1| PHP domain-containing protein [Acetivibrio cellulolyticus CD2]
Length = 569
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 62/327 (18%)
Query: 221 RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
+S +YY A IE L +E+ D++K + GIG ++ I E+VTTGKL E+ +K
Sbjct: 26 KSKAYYDASRTIELLDEDLEALILNDRLKEIKGIGNALTQKITELVTTGKLEYYENLKKS 85
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
+ + ++ G GP +Y++ G T+ +LK + ++ + L F + +
Sbjct: 86 IPHGLVEML-KIPGFGPKKVAAVYKQLGITTIGELKY--ACEENRLIKLAGFGE---KTQ 139
Query: 337 RHEVEQMERLLQKAGEEVLP-----------------EVIILC-GGSYRRGKASCGDLDV 378
+ +E +E L + + + P +VI +C GGS RR K + D+D+
Sbjct: 140 KKILEGIENLNKYSNQFYYPFAKTLADMIIATLKESGQVIRVCEGGSLRRKKETVKDIDI 199
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
+ + ++ F L+ S S+ T S V G+
Sbjct: 200 LASSNNAEAVMAL------------FTNHPLVSSVTSKGETKSAVILKDGI--------- 238
Query: 439 HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 498
+D +V D Y + L +TG+ N LR +A+ +G ++++ GLF +
Sbjct: 239 -NVDLRVVSDDEYPYALHHFTGSKEHNTALRHIAKQQGIKINEYGLF------------K 285
Query: 499 ARTSLKFDTEKEVFDFLGFPWLEPHER 525
++K EK++F G ++EP R
Sbjct: 286 GNETIKCSDEKDIFKVFGMDYIEPELR 312
>gi|325111069|ref|YP_004272137.1| PHP domain-containing protein [Planctomyces brasiliensis DSM 5305]
gi|324971337|gb|ADY62115.1| PHP domain protein [Planctomyces brasiliensis DSM 5305]
Length = 584
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 49/351 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIG 252
N I ++F +L ++ G + R +Y A I+ LP +E + ++ L GIG
Sbjct: 3 NATIADMFDQLADLLELDGANGFRVRAYRNAARTIDALPDSLEEMIADESQKLTDLSGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 311
K + + I+ IV TG+L +LE ++ + + + G+GP L+ + H ++LD+L
Sbjct: 63 KDLAEKIRNIVETGELKQLEEYKAKIPADVMKML-RIPGLGPKKVAILFYELHLKSLDEL 121
Query: 312 KN--EDSLTHSQR-----------LGLKYFDDIKTRI----PRHEVEQMERLLQKAGEEV 354
K+ E+ + ++ GL++ + +R+ + VEQ+ L+ G
Sbjct: 122 KHAAENGVIAQKKGFGKKTEQLILEGLEHLEQSGSRMYLADAKPFVEQILSGLRGLGSVH 181
Query: 355 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
EV GS RR K + GDLD++ D FL + + K +
Sbjct: 182 QAEV----AGSVRRLKETIGDLDILATADDPAEAMDFLENHPQTDKVL----------AR 227
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
E T G +R +D +V P + + +TG+ N R LA+
Sbjct: 228 GETKQRVRFKPLVRCMTPDGNRMRLEMDLRVVPAASFGAAMQYFTGSKEHNIVTRRLAQQ 287
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ +L++ GLF G ++ V + TE+ ++ L PW+ P R
Sbjct: 288 RDLKLNEYGLFR----EGDEEAVAGK------TEEAIYKTLDLPWIPPELR 328
>gi|408533755|emb|CCK31929.1| PHP domain protein [Streptomyces davawensis JCM 4913]
Length = 591
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 156/354 (44%), Gaps = 70/354 (19%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSM 255
N + +F + ++ G D R+ Y KA I + + D +K +PG+GKS+
Sbjct: 23 NDEVAALFREYADLISITGGDAFRARVYEKAARAIGGHHTDVSTLDAKGLKEIPGVGKSI 82
Query: 256 QDHIQEIVTTGKLSKLEHFEK--DEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
D + E + +G ++ +E E VR ++ + +GP A LYE+ G ++D+L
Sbjct: 83 ADKVVEYLDSGSVAAVEELRARIPEGVRRLT---AIPSLGPRKALMLYEELGISSVDELA 139
Query: 313 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME--RLLQKAG------------EEVLPEV 358
+ H +RL D+K PR E + LL+ +G EEV+ +
Sbjct: 140 DA---IHEERL-----RDLKGFGPRTEENLLHGIDLLRSSGGRVHIDVAAELAEEVVAAL 191
Query: 359 IILCG-------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
+ G GS RRG+ + GD+DV++ R S +K E+ ++ E +I
Sbjct: 192 SEVSGVQRCAYAGSLRRGRETIGDIDVLVAA--RTS-----GPVMKAFTELPYVTE-VIG 243
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
S + + V T GL +D +V P+D + ++ +TG+ N ++R
Sbjct: 244 SGEKK----TSVRTDRGLS----------VDLRVVPKDSWGAAMLYFTGSKAHNIKVRER 289
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A + +L + GLF A G + TE++V+ LG PW+ P R
Sbjct: 290 AVHQKLKLSEYGLFDAESGK----------KIVSRTEEDVYARLGLPWIAPALR 333
>gi|312143800|ref|YP_003995246.1| PHP domain-containing protein [Halanaerobium hydrogeniformans]
gi|311904451|gb|ADQ14892.1| PHP domain protein [Halanaerobium hydrogeniformans]
Length = 575
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 152/352 (43%), Gaps = 63/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGE-DRRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 254
NK I +I + ++ GE D + +Y A IE L I S D++K + GIG
Sbjct: 6 NKEIAKILNEFADLLAIKGENDFKIRAYSNAARKIESLSDDISSLAAEDKLKEIKGIGSG 65
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 313
+ + + EI+ G + ++E K E + + G+GP TA + Y E G L L+N
Sbjct: 66 IAETLMEILENGIIEEMETI-KAELPHGVVEMTNIPGLGPKTAHRFYYELGIEDLISLEN 124
Query: 314 -----------------EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
E+ L H + KY D I I ++ ++ + E+V
Sbjct: 125 ALKEAKVRELKGFGKKSEEKLLHGLKNYEKYVDKI---ILSEALKTAGIIIAEIKEKVES 181
Query: 357 EV---IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
E I +CG S RRGK GDLD++I +K +E+ L L F+
Sbjct: 182 EYFSQIEVCGSS-RRGKEMTGDLDILIA--------------TEKPEELSPLLTQLDFAA 226
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
E +G DT + T G + DF++ D + L +TG+ N R+R LA+
Sbjct: 227 ---EIIGAG-DTKVSIRTRKGIQ----TDFRLVAEDEFPSALHYFTGSQAHNVRMRQLAK 278
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
K +L++ GL G K+ + ++E ++F+ LG ++ P R
Sbjct: 279 DKNLKLNEYGLIRE---DGSKE--------ELNSESDIFNILGLDYIIPELR 319
>gi|126179729|ref|YP_001047694.1| phosphotransferase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862523|gb|ABN57712.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
Length = 543
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 138/341 (40%), Gaps = 70/341 (20%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSM 255
N+++ E + + GEDR R +Y +A I++L F + D+ + +PGIG +
Sbjct: 10 NRDVAERLAFMARLLGIAGEDRYRIAAYERAARQIDRLSFPVAGLDEEELTRIPGIGDRI 69
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
I+EI TG +L+ + + + G V G+GP T LY++ G R+LDDL+
Sbjct: 70 AGQIREIAATGTFGELKDLQATIPGSVVEMLG-VAGLGPRTLHILYKRLGIRSLDDLERA 128
Query: 315 DSLTHSQRL----GLKYFDDIKTRIP--RHEVEQMER----LLQKAGEEVLPEVIILCGG 364
H R+ G K + IK I R +M R + LP+ G
Sbjct: 129 VK-GHRLRVLSGFGSKKEEAIKRGIAQFRQRSNRMTRPQAEAVLAYVAAALPDGRYTVAG 187
Query: 365 SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD 424
SYRRG ++ G L++V+ G S ++ D+GV+
Sbjct: 188 SYRRGSSTVGRLEIVV--------AGNGSAVADRIP------------------PDAGVN 221
Query: 425 TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
+ +D Y L+ TG+ L +A ++GYRL GL
Sbjct: 222 V------------------RSTGKDRYGTALLCATGSAGFLAGLGHVAAARGYRLTPDGL 263
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ G +F +E+EVF FLG + P R
Sbjct: 264 TDSANGR----------LQEFASEEEVFSFLGMETVPPELR 294
>gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1]
gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1]
Length = 575
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 148/350 (42%), Gaps = 63/350 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIE---SADQVKGLPGIGKS 254
NK + +IF K +I +G++ Y+ A +I L IE ++ LPGIG+
Sbjct: 3 NKELAQIFEKWADILEFMGDNPYHVRAYRNAARLINDLSEDIEVLAREGKLSQLPGIGQR 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
+Q I E + TGK+ + E K + TI ++ G+GP T + LYE+ G R+++DLK
Sbjct: 63 LQAKILEFLRTGKIEEFEKL-KQQVPDTIFTLLDIPGVGPKTVKLLYEELGIRSIEDLKR 121
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQME----------------RLLQKAGEEVLPE 357
++ + L L F + + +E +E R++ E E
Sbjct: 122 --AIERGELLKLPGFGPKRVEKIKKGIELLEKSGGRILLGVAVFIADRIVNHLKEHSAVE 179
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK--KLKEMKFLREDLIFSTHS 415
I +C GS RR K + GD+D++ K++ + +V +KE+ + +
Sbjct: 180 RISVC-GSTRRMKETVGDIDIL---ASGKNNLEIVEAFVNLPNVKEV-LWKGPKKATVIV 234
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
EEG ++D +V D Y L +TG+ N LR +
Sbjct: 235 EEG--------------------EQVDLRVIEPDSYGAALQYFTGSKAHNIHLRTICLKM 274
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GY+L++ GLF G+ TE+E++ LG P R
Sbjct: 275 GYKLNEYGLFKGDKRIAGR------------TEEEIYSALGMDTPPPEIR 312
>gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
gi|448288324|ref|ZP_21479524.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM
11551]
gi|445569843|gb|ELY24413.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
Length = 582
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 146/346 (42%), Gaps = 43/346 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 253
N + +F + ++ A + +Y +A I + P IE AD V + G+G
Sbjct: 4 NDEVASLFEEFADLLDAKDVSYKPNTYRRAAENIREYPHPIEELAADGADAVGEIQGVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E TG++ +LE + V +L V G+GP T KLY+ G TLD+L+
Sbjct: 64 AISAKIIEYFETGEIEELEALRAELPVEMATLTS-VEGVGPKTVGKLYDALGITTLDELE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIP-RHEVEQMERL--LQKAGEEVLPEV-------I 359
E+ + + G K +I+ IP E ++ ERL + ++VL +
Sbjct: 123 RAAEEEQIREVKGFGPKTEANIRENIPFAREAQKRERLGNARPLADDVLAYLREADTVQA 182
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
GS RR + + GD+DV++ S + + +T E G
Sbjct: 183 AEVAGSIRRWRDTIGDVDVLVAAESGDSVVEAFTDWPAA-------------NTVIEAGP 229
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
G+ R+D +V + + L +TG+ N LR +A KG ++
Sbjct: 230 SKASVRSSGI----------RVDLRVVVPEEFGAALQYFTGSKDHNVALRNIAIEKGLKM 279
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F + + RA + +TE +++ LG P++ P R
Sbjct: 280 NEYGVFDVSDVEDPETDQRAGEKIAGETEASMYEALGLPFIPPELR 325
>gi|154332627|ref|XP_001562130.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134059578|emb|CAM37160.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1438
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 151/402 (37%), Gaps = 117/402 (29%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 229
PD + + ++F +L I ALGE +S SY + +
Sbjct: 910 PDYRERVVQLFEQLAQINSALGERFKSQSYGRTVEHLKRGDKVFQLLPPNLLPLPEDDPE 969
Query: 230 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 267
+E L +K +SA Q + +PG+G +++ + EI+ TG
Sbjct: 970 KKAAVEAL-YKDDSAAQRRRAEEVERNRAKRSLVLSPDNLIPGLGTKLREKVIEILVTGG 1028
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD-------------DLKNE 314
L +L E +R I +V G+GP TA ++K + D+ N+
Sbjct: 1029 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKHDISTVAQLRDYAIKAGELDMNNK 1088
Query: 315 DS----------------LTHSQRLGLKYFDDIKTRIPR-----HEVEQMERLLQKAGEE 353
DS L +QRLGL Y++D+ RIP HE R+ + G++
Sbjct: 1089 DSGKPSNLVACSDKSKFHLNDAQRLGLVYYEDMCHRIPHDEGRLHEAFMKLRMRKYLGKD 1148
Query: 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----------------FLSKYVK 397
+++C GSYRR S GD+DV+I H + L ++
Sbjct: 1149 Y---ELVVC-GSYRRQVESAGDIDVLITHKRSAAEGSSGDSSSGGRPLLPPSEVLGTFLA 1204
Query: 398 KLKEMKFLREDL---------IFSTHSEEGTDSGVDTYFGLCTYPGRELR-----HRIDF 443
LK K++ L + + E T + T G R R+D
Sbjct: 1205 GLKADKYIEATLAQGPTKFMGLCRLRAVENTSAAATTGKGKAAKAKNTARPKFRARRLDV 1264
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ D + ++ +TG+ N +R A K L++ GLF
Sbjct: 1265 RYVDSDGFPAAMLYFTGSKNFNVIMRSEAIKKHCILNEYGLF 1306
>gi|149173335|ref|ZP_01851965.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
gi|148847517|gb|EDL61850.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
Length = 573
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 140/347 (40%), Gaps = 55/347 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA-----DQVKGLPGIG 252
N I F +L ++ G + R +Y A I LP I+ +++ LPGIG
Sbjct: 3 NSEIARQFEELADLLEIQGANPFRLRAYRNAARTISGLPDSIQDIVESDPRELQDLPGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
K + + I IV T L +LE ++ + + ++ GIGP L+ E ++LDDL
Sbjct: 63 KDLAEKIVTIVETSTLPQLEELKEQIPADVVRML-DIPGIGPKKVAFLFSELSIQSLDDL 121
Query: 312 K--NEDSLTHSQR-----------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 358
K E+ + Q+ GL++ + R+ E + + ++
Sbjct: 122 KAAAENGVIAEQKGFGKKTEQIILEGLEHLNQAGNRVRLAEAKAQSDAIIHDLSKLDSVQ 181
Query: 359 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
I GS RR K S GDLDV++ L+ + +L+ +
Sbjct: 182 QISEAGSCRRRKESVGDLDVLVTSSQPAEVMDALADH------------ELVNKVLARGD 229
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
T V GL +D +V P + Y L+ +TG+ N LR ++ +G +
Sbjct: 230 TKQRVRLNSGL----------ELDLRVVPEESYGAALLYFTGSKEHNIVLRRRSQDRGLK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ GLF GK TE+EV+ L PW+ P R
Sbjct: 280 LNEYGLFREDELISGK------------TEEEVYKALDLPWIPPEIR 314
>gi|21227996|ref|NP_633918.1| DNA polymerase beta [Methanosarcina mazei Go1]
gi|20906424|gb|AAM31590.1| DNA polymerase beta [Methanosarcina mazei Go1]
Length = 584
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 149/354 (42%), Gaps = 58/354 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 252
N+ + E+ + +I + + +Y +A IE IE + KG +PG+G
Sbjct: 3 NREVAELLYETADIMEFQQIEWKPRAYRRAAQNIENFGEDIEKVYEKKGKKGLTEIPGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 311
+S+ DHI E + TGK+ K E + T L E+ G+G +KL +K +T+ DL
Sbjct: 63 ESIADHIAEYLKTGKVEKFEGLKGKAPSGTAELM-EIRGLGAKKMKKLADKLEIKTMSDL 121
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------ 359
KN +RL G+K ++I I +E L KA EE++ +
Sbjct: 122 KNAVKSHRIRRLSGFGVKSEENIARAIENYEKSHSRIPLGKALPLAEEIISGLKEELKNG 181
Query: 360 --------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
I+ GS RR K + GD+D++ + + K + +V + + +
Sbjct: 182 TPGLDLSRIIYTGSLRRLKETIGDIDILAEAEEADAGK-IMDAFVSLPEAGQVV------ 234
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
S+ T S V G ID +V P + Y L +TG+ N LR +
Sbjct: 235 ---SKGRTRSSVILKEGFA----------IDLRVVPPESYGAALQYFTGSKEHNIGLRNI 281
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A +GY+L + GL+ G + +E+E++ LG ++ P R
Sbjct: 282 ALREGYKLSEYGLYSKNSGE----------RIAGKSEEEIYRKLGLEYIAPELR 325
>gi|449018861|dbj|BAM82263.1| similar to DNA polymerase lambda [Cyanidioschyzon merolae strain
10D]
Length = 715
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 267 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ-RLGL 325
L +L F + + ++LF VW A + Y G +TL+++ + LT + +LG+
Sbjct: 272 NLLELRTFRDESAAQALTLFHCVWHAKRIRAMQWYHAGCKTLEEVASRCRLTDKRFQLGI 331
Query: 326 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI----- 380
Y+DD + +P EV + + A E+ ++ ++ G+ RR CGD+D+++
Sbjct: 332 LYYDDFRLLVPYGEVAAITSIFASASTEIDADLSVIPVGALRRNYQECGDVDLIVTGEPE 391
Query: 381 -MHPDRKSHKGFLSKYVKKLKEMKFLREDLI 410
+HPD + + G L +K L+E F+ ++ +
Sbjct: 392 TLHPDGERY-GSLKALIKLLRERHFITDEAV 421
>gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
Length = 577
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 54/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE--SADQVKGLPGIGKSM 255
N+ I IF ++ +I G++ +Y +A IE L +E S D++ +PGIG+ +
Sbjct: 3 NQEIARIFSEMADILEIKGDNPFKIRAYRRAALNIEGLSRSVEDLSRDELLEIPGIGEEL 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK-- 312
I+E + TG + + + + +SL V G+GP TA++++E+ H ++DDL+
Sbjct: 63 AAKIEEYIGTGAIHAHDKLKGEIPSGLLSLLA-VPGLGPKTARQIFEQRHIASIDDLERA 121
Query: 313 -NEDSLTHSQRLGLKYFDDIKTRIPR----HEVEQMERLLQKA---GEEVLPEV---IIL 361
E L + K ++I I HE + R+L A EE+ I
Sbjct: 122 AREHKLAGIPGIQKKTEENILKGIATVQQGHERRPLGRVLPLALDLVEELRKRARFGAIE 181
Query: 362 CGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLS-KYVKKLKEMKFLREDLIFSTHSEEGT 419
GS RR K +C D+D+V P ++ K F++ V+++ R ++ S
Sbjct: 182 IAGSIRRRKETCKDIDIVATSPAPEEAMKAFITLPAVEQIIMHGPTRSSVVISD------ 235
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
GL ++D +V + + L TG+ N RLR +A +G ++
Sbjct: 236 --------GL----------QVDLRVVAEESFGAALAYLTGSKGHNVRLRDMAVKQGLKI 277
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F ++ AR L E++V+ LG P++ P R
Sbjct: 278 NEYGIF--------REKDEAR--LGGAKEEDVYRLLGLPFIPPEMR 313
>gi|169831315|ref|YP_001717297.1| phosphotransferase domain-containing protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169638159|gb|ACA59665.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 578
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 143/349 (40%), Gaps = 60/349 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPF---KIESADQVKGLPGIGKS 254
NK++ I + +I GE+ R +Y +A IE L ++ AD++ +PG+G+
Sbjct: 3 NKHVARILQNIGDILEIRGENPFRVRAYRRAAHSIEALGVDLAELRRADRLTDIPGVGRD 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK----GHRTLDD 310
+ I EI+ TG + + ++ + L V GIGP TA+ LYE+ G L+
Sbjct: 63 LAGKITEILDTGTCAYYDRLIREIPAGIVQLL-TVPGIGPRTARILYEELQISGLDELER 121
Query: 311 LKNEDSLTHSQRLGLKYFDDI----------KTRIPRHEVEQMERLLQ---KAGEEVLPE 357
L L + LG K + I + R+P V L +AG P
Sbjct: 122 LGRAGRLAELRGLGEKTQNKILSGLELVRRGRERLPLGRVYPFASALVETIRAGGA--PV 179
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
I GS RR + + D+D+V + G ++ + F E L EE
Sbjct: 180 ERISVAGSIRRFQDTVKDVDIV-------AASGKPEAVIRFFTRLGFWTEIL------EE 226
Query: 418 G-TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
G T + T GL R+D +V +Y L TG+ N R+R LA KG
Sbjct: 227 GSTRAAARTEEGL----------RVDLRVVDPAVYGAALCYLTGSKAHNIRMRQLAAQKG 276
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+L++ G+F R + E +VF L P++ P R
Sbjct: 277 LKLNEYGVF------------RDDRCIAGAEEDDVFAALELPFIPPELR 313
>gi|157864821|ref|XP_001681119.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania major
strain Friedlin]
gi|68124413|emb|CAJ02269.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania major
strain Friedlin]
Length = 673
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 152/412 (36%), Gaps = 136/412 (33%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 229
PD + + +IF +L I ALGE +S Y + +
Sbjct: 140 PDYRERVVQIFEQLTQINSALGERFKSQLYGRTVECFKRGDKVFQLLPPNLLPLPEEDPK 199
Query: 230 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 267
+IE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 200 KKAIIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 258
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD------------DLKNE 314
L +L E +R I +V G+GP TA ++K G T+ D+ N+
Sbjct: 259 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGISTVAQLRDYAIKAGELDMSNK 318
Query: 315 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 357
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 319 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 378
Query: 358 -VIILCGGSYRRGKASCGDLDVVIMHPDRKSH-------------------KGFLSKYVK 397
+++C GSYRR S GD+DV+I H R+S L ++
Sbjct: 379 YELVVC-GSYRRQVESAGDIDVLITH--RRSAAEGGGGSSSSSGGRPLLPPSKVLGAFLA 435
Query: 398 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC------------------------TYP 433
LK K++ L G + GLC P
Sbjct: 436 GLKADKYIEATLA----------QGPTKFMGLCRLRATVTESVSAATGKGKAAKANGKAP 485
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
+ R+D + D + ++ +TG+ N +R A K L++ GLF
Sbjct: 486 TKFRARRLDVRYVDSDSFPAAMLYFTGSKNFNVIMRSEAIKKHCVLNEYGLF 537
>gi|384439577|ref|YP_005654301.1| DNA polymerase beta family (X family) [Thermus sp. CCB_US3_UF1]
gi|359290710|gb|AEV16227.1| DNA polymerase beta family (X family) [Thermus sp. CCB_US3_UF1]
Length = 577
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 146/332 (43%), Gaps = 68/332 (20%)
Query: 221 RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 275
R +Y++A + L IE + + LPGIG + + I E + TG+L K H E
Sbjct: 26 RVRAYHQAARTLYDLDIPIEDLARGGKEALLALPGIGPDLAEKILEFLATGRLKK--HEE 83
Query: 276 KDEKV-RTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 333
+KV R + V G+GP TA++LY E G +L+ LK +L L LK F K
Sbjct: 84 LAQKVPRGVLAVMAVPGVGPKTARQLYHELGIDSLEGLKA--ALERGDLLRLKGFGPKKA 141
Query: 334 ---------------RIPRHEVEQMERLLQKAGEEV--LPEV--IILCGGSYRRGKASCG 374
R P V + R L EE+ LP V LC GS RR + + G
Sbjct: 142 ERIREGLALAQAASQRRPLGAVLSLARGLL---EEIRRLPGVEKAELC-GSARRYQDTVG 197
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
DLD ++ S +G + VK FLR + +++ + V GL
Sbjct: 198 DLDFLV-----ASLEG--ERVVK-----AFLRLPQVGEVYAKGEERATVFLKNGL----- 240
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
++D +V P + + GL TG+ + +LR LA+ +G +L + G+F
Sbjct: 241 -----QVDLRVVPPESWGAGLQYLTGSKGHSIKLRSLAQDRGLKLSEYGVF--------- 286
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
RA L +TE+ V+ LG P++ P R
Sbjct: 287 ---RAGVRLAGETEEGVYAALGLPYIPPPLRE 315
>gi|385799732|ref|YP_005836136.1| PHP domain-containing protein [Halanaerobium praevalens DSM 2228]
gi|309389096|gb|ADO76976.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
Length = 575
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 59/350 (16%)
Query: 199 NKNITEIFGKLINIYRALGE-DRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 254
NK I +I + ++ GE D + +Y A IE KI + +++K + GIG
Sbjct: 6 NKEIAKILSEFADLMAIKGENDFKIKAYTNAARQIESYQTKISELVATNELKEIKGIGSG 65
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-----------EK 303
+ + I E++ G +S++E + + I + + G+GP TA + Y EK
Sbjct: 66 IAETITELLENGSISEMEAIKAELPPGVIEMTN-IQGLGPKTAHRFYYELEIEDLERLEK 124
Query: 304 GHRT--LDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
+T + LK +E L + + KY D I Q+ + ++ + L
Sbjct: 125 ALQTGKIQKLKGFGKKSEAKLLKALKNHEKYVDKINLNKALKTANQIIKKIKHQVDSSLF 184
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFSTHS 415
I +CG S RR K GDLD++I ++ KLK + F E + T
Sbjct: 185 SQIEVCGSS-RRAKEMTGDLDILIATSQPEA-------IAAKLKNLDFTAEVIGAGKTKV 236
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
T++GV T F L + +P ++ F TG+ N R+R LA++
Sbjct: 237 SIRTEAGVQTDFRLVSQAE-----------FPSALHYF-----TGSKAHNVRMRQLAKNN 280
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+L + GLF G K+ + ++E ++F LG ++ P R
Sbjct: 281 NLKLSEYGLFKK---DGSKKLI--------ESEADIFSILGLDYIIPELR 319
>gi|169845525|ref|XP_001829482.1| hypothetical protein CC1G_00661 [Coprinopsis cinerea okayama7#130]
gi|116509547|gb|EAU92442.1| hypothetical protein CC1G_00661 [Coprinopsis cinerea okayama7#130]
Length = 444
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 150/375 (40%), Gaps = 80/375 (21%)
Query: 223 FSYYKAIPVIEKLPFKIESAD-QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE--- 278
++ AI VI +L I+S D QV + GIG +++ I L+ E+ + E
Sbjct: 61 LAFSNAINVISQLQQPIKSGDDQVLEMKGIGIGIKNRINTYFIQKSLASSENSVERENAL 120
Query: 279 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS----LTHSQRLGLKYFDDIKTR 334
K R I V GIG A+ L E G L L + L+ Q +GLKY + ++
Sbjct: 121 KKRAILDLQRVPGIGAVKAKALVEGGCTGLASLIASEEFHSLLSAQQIIGLKYMEHLEKP 180
Query: 335 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD---------- 384
R +VE + L KA E+I + G YRRG + ++++++HPD
Sbjct: 181 ASRDQVESVLNLC-KANLSSRYEIIPV--GEYRRGLSESSTIEMLVLHPDHVHVPLPNVP 237
Query: 385 ---------------------RKSHKGFLSK-----------YVKKLKEMKFLREDLIFS 412
R K L+K V L++ L E + +
Sbjct: 238 PPFSGDDFDDFLRSSDTPATKRPRKKASLTKKDRQNSRLHSEVVPVLQQRGVLLEKIAET 297
Query: 413 THSEEGT--DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
H+ G + G PG E R RI + P A L+ +TG++ L++ LR
Sbjct: 298 HHNWTGVVRIPSTGSASGPMVQPG-EYR-RITLHLVPAKSRAAALVYFTGDEGLHKHLRD 355
Query: 471 LAESKGYRLDDTGLF------------------PATYGSGGKQGVRARTSLKFDTEKEVF 512
A LD+ GL+ P G GG + +K ++E+++F
Sbjct: 356 QATPLAMYLDEFGLWKWKPQDVVELPISEALNNPDRLGDGGFWSL-----VKTESEEDIF 410
Query: 513 DFLGFPWLEPHERNL 527
+G P++EP RN
Sbjct: 411 THIGVPFVEPTMRNF 425
>gi|108803335|ref|YP_643272.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
gi|108764578|gb|ABG03460.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
Length = 574
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 145/348 (41%), Gaps = 53/348 (15%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----ADQVKGLPG 250
P N I EI ++ ++ GE+ R +Y +A +E P + + + LPG
Sbjct: 2 PVHNAEIAEILYEVADLLEIEGENPFRVRAYREAARTVENHPRSLAEMAGEGEDLTRLPG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD 309
IG+ + D I+EI TG L + E + L G V G+GP ++L+ + G +
Sbjct: 62 IGEDLADKIREIARTGTLRQAEELRERVPPGLRGLLG-VPGLGPRRVRELHRRLGVESAA 120
Query: 310 DLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERL-LQKAGEEVLPEVIILCG-- 363
+L+ +RL G K +I + R E Q RL + L E + CG
Sbjct: 121 ELERAAREGRVRRLPGFGAKTERNILEALGRKERPQRFRLSAAEPAARALEEHLEGCGAV 180
Query: 364 ------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
GS+RR K + GDLDVV S+ +++ E ED I S+
Sbjct: 181 REAVVAGSFRRRKETVGDLDVVAC-----------SQEGRRVIEHFVAFED-IERVVSKG 228
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
T S V GL D +V P + + L+ +TG + LR +A +
Sbjct: 229 STRSSVVLKNGL----------EADLRVVPEESFGTALLYFTGAQPHHVALRDMALKRRL 278
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+L++ GLF G+ TE+EV+ LG ++EP R
Sbjct: 279 KLNEYGLFRGEERVAGR------------TEEEVYAQLGLRYIEPELR 314
>gi|386839206|ref|YP_006244264.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099507|gb|AEY88391.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792498|gb|AGF62547.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 575
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 144/331 (43%), Gaps = 61/331 (18%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
G+ ++ +Y KA I P + + AD ++ +P +G+S+ + + E + TG ++ +E
Sbjct: 24 GDAFKARAYEKAARAIGGYPVDVSTLDADGLREIPNVGRSIAEKVAEYLRTGTMAVVE-- 81
Query: 275 EKDEKVRT-ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 333
E+ K+ + + +GP A +LYE H + + LK F +
Sbjct: 82 ERRAKIPAGVRELITIPTLGPKKALRLYEDLHISSVSELAAAIEADALAD-LKGFGEKTQ 140
Query: 334 RIPRHEVEQMERLLQKAG------------EEVLPEVIILCG-------GSYRRGKASCG 374
RH +E LLQ+AG EE+ E+ + G GS RR + + G
Sbjct: 141 ENIRHGIE----LLQRAGSRVPLALALDTAEEITAELSAVTGCERCAYAGSLRRMRETVG 196
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
DLDV++ R+S + ++ L E+ E + + + V T GL
Sbjct: 197 DLDVLV--SARRS-----APFMDALCELPVTAEVI-----ARGAKKTSVRTGKGL----- 239
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
++D +V P + + L +TG+ N R R +A G +L + G+F GSG
Sbjct: 240 -----QLDLRVVPPESWGAALQYFTGSKAHNIRTRTIAVHLGLKLSEYGVFDT--GSG-- 290
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
S+ TE+EV+ LG PW+ P R
Sbjct: 291 ------ESVASRTEEEVYARLGLPWIPPTLR 315
>gi|398356135|ref|YP_006529462.1| DNA polymerase/3'-5' exonuclease PolX [Sinorhizobium fredii USDA
257]
gi|399995354|ref|YP_006575592.1| K02347 DNA polymerase (family X) [Sinorhizobium fredii HH103]
gi|365182201|emb|CCE99051.1| K02347 DNA polymerase (family X) [Sinorhizobium fredii HH103]
gi|390131382|gb|AFL54762.1| DNA polymerase/3'-5' exonuclease PolX [Sinorhizobium fredii USDA
257]
Length = 611
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 139/357 (38%), Gaps = 56/357 (15%)
Query: 189 PSLLYNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----AD 243
P L+ N +I +F ++ ++ + R +Y +A IE LP +
Sbjct: 31 PDHLHTMTVHNADIAALFNRMADLLEIEAANPFRIRAYRRAASTIEDLPENVAQMMAEGR 90
Query: 244 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303
+ LPGIG+ + I E V TG L LE E ++ + G+GP L++
Sbjct: 91 SLSDLPGIGEDLAGKIAEFVETGHLKSLEEVEA-RTPSALAALTAIPGLGPKRVHVLHQS 149
Query: 304 -GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR----IPRHE----------VEQMERLLQ 348
G TL+ L + H R ++ I+T+ I +H E R L
Sbjct: 150 LGITTLEQLAKA-AREHRVRELPRFSAAIETKILDEIAKHRTAEKRFKISTAEDFARGLV 208
Query: 349 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
L L GS+RR K + GDLDV+ D + Y D
Sbjct: 209 DYLRSALGITQTLVAGSFRRRKETVGDLDVLATCADGPAAIEHFVAY------------D 256
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+ + S+ T S V G+ ++D +V + Y L +TG+ N +
Sbjct: 257 EVETVLSKGPTRSTVLLKAGI----------QVDLRVVAEESYGAALHYFTGSKAHNIAV 306
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
R + KG++L++ G+F GG+ TE+EVF P++EP R
Sbjct: 307 RKRIQDKGWKLNEYGIFDGEKRIGGR------------TEEEVFRAADLPYIEPELR 351
>gi|89899639|ref|YP_522110.1| PHP-like protein [Rhodoferax ferrireducens T118]
gi|89344376|gb|ABD68579.1| PHP-like [Rhodoferax ferrireducens T118]
Length = 580
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 151/356 (42%), Gaps = 68/356 (19%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA----DQVKGLPG 250
P N ++ +F ++ ++ G + R +Y A ++ +L + + +++ LPG
Sbjct: 2 PITNADVVAVFSEIADLLEIEGANPFRVRAYRNAARMLGELGRSVRTMVDRPEELDALPG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 309
IG + I E+VTTG + L+ K E I+ ++ G+GP + L+ E G TL
Sbjct: 62 IGPDLAGKIVEVVTTGSCALLQRLRK-ELPPVITELLKIPGLGPKRVRTLHRELGIETLA 120
Query: 310 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK------AGEEVLPEVII--- 360
L+ +++ ++ + R +E RLLQ+ A E + + ++
Sbjct: 121 QLRQA-----AEQGRVQSVHGFGAKSERQILEATGRLLQQERRYKWADMEPVAQALLADL 175
Query: 361 ---------LCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDL 409
+ GS RRG+ + GDLD+++ +P + S+ ++++ E R +
Sbjct: 176 HATPGVHRAVAAGSLRRGRETVGDLDLLVTAENPGTVMDRLTASEDIQRVLEQGVTRSSV 235
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+ + GL ++D + + + +TG+ N LR
Sbjct: 236 VLKS--------------GL----------QVDLRAVAPASFGAAWLYFTGSKAHNIALR 271
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
LA+ K +L++ GL+ R + + DTE V+ LG P++EP R
Sbjct: 272 KLAQDKDLKLNEYGLY------------RGKQRIAGDTETAVYKALGLPFIEPELR 315
>gi|294495750|ref|YP_003542243.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
gi|292666749|gb|ADE36598.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
Length = 570
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 59/351 (16%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 251
+N++I ++ ++ +I+ + + +Y KA I + I KG +PG+
Sbjct: 2 INRDIAKLLYEIADIFEYKEVEWKPRAYRKAARKIGDMREDISGLYSKKGREGLENIPGV 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDD 310
G + DHI E + G + + E K E R S ++ G+GP A+KL E +++ D
Sbjct: 62 GSRIADHIVEYIEAGSVREFEKIRK-ETPRGASNIIKIRGLGPKKAKKLMDELDIQSIPD 120
Query: 311 LK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-------- 359
LK N + + G K +++ I ++E + ER+L ++ E+I
Sbjct: 121 LKEAINNQEIRKLEGFGKKTEENLDKAISQYE-KSHERMLLPKATDLAEEIISYMEENTT 179
Query: 360 ---ILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLS-KYVKKLKEMKFLREDLIFSTH 414
I GS RR K + GD+D++++ D + F++ + V +++ R +I
Sbjct: 180 LKKIDYAGSLRRMKETIGDIDILVVASDPEEVMDAFVNFENVDEVESRGKTRSTIILQNG 239
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
ID +V P Y L +TG+ N LR LA S
Sbjct: 240 G------------------------HIDLRVVPESSYGAALQYFTGSKDHNIELRNLALS 275
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KGY+L + GLF ++ L+ E ++ LG ++ P R
Sbjct: 276 KGYKLSEYGLFKED----------SKKKLEGKKEDRIYGKLGLSFIPPELR 316
>gi|20067715|emb|CAD29098.1| chimeric DNA-directed DNA polymerase xf5-2c [synthetic construct]
Length = 203
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 109/214 (50%), Gaps = 34/214 (15%)
Query: 325 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKASCGDLDVVIM 381
+ + +D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+
Sbjct: 11 VNHLEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKMLNDVDLLII 70
Query: 382 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----REL 437
P++K L + ++ +F+ + L G + G+C P E
Sbjct: 71 VPEKK----LLKHVLPNIRIKRFITDTL----------SKGETKFMGVCQLPSENDENEY 116
Query: 438 RH-RIDFKVYPRDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
H RID ++ P+D YA + + +TG ++ +R+ A KG+ +++ + P
Sbjct: 117 PHRRIDIRLIPKDQYAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL----- 169
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 170 GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 202
>gi|363748350|ref|XP_003644393.1| hypothetical protein Ecym_1342 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888025|gb|AET37576.1| hypothetical protein Ecym_1342 [Eremothecium cymbalariae
DBVPG#7215]
Length = 531
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
N I+E +L GE + +Y A + + + + + LP +G +
Sbjct: 154 NVIISEALQRLATKSNLQGEPFKRRAYMMASAALLECGHPVRTYEDALALPDVGSGIATK 213
Query: 259 IQEIVTTG-KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 317
I ++V G ++ LE + E+ + + F + +GP TA + +++ D+ L
Sbjct: 214 IAQLVANGGRIPGLE-LDLSEQEKILEYFVQCHEVGPTTASQWQALHYKSFKDV-----L 267
Query: 318 THSQRL--------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 369
TH+++ G+++F++ + R+PR EVE+ ++K + P ++I GSYRRG
Sbjct: 268 THTKQWNLHWSILYGMRFFEEWQLRMPRSEVEEHLEFIRKHAQ---PGLVIEAMGSYRRG 324
Query: 370 KASCGDLDVVI 380
+ CGD+D+++
Sbjct: 325 RKDCGDIDLLV 335
>gi|389740563|gb|EIM81754.1| Nucleotidyltransferase, partial [Stereum hirsutum FP-91666 SS1]
Length = 393
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
S+ AI VI+ L + ++S + + L GIG + I + GK K + + +K +
Sbjct: 7 SFQTAINVIKTLDYPLKSGKEAEKLRGIGPKISARIDAFIN-GKGPKTQA-KALKKTKAA 64
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTHSQRLGLKYFDDIKTRIPRHEV 340
SLF V G+G ATA KL G ++ D++ D LT +Q++GL Y D + + R +
Sbjct: 65 SLFQTVPGVGYATAMKLVNAGCTSIKDMRKPEYFDMLTPAQKVGLMYIDHLDMPVTREQS 124
Query: 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
E + ++ + + + I+ GSYRR + D+D+++ HP
Sbjct: 125 ESVADFIR---DHISSKFEIVHSGSYRRKALTSSDIDILLFHP 164
>gi|152992587|ref|YP_001358308.1| family X DNA polymerase IV [Sulfurovum sp. NBC37-1]
gi|151424448|dbj|BAF71951.1| DNA polymerase IV, family X [Sulfurovum sp. NBC37-1]
Length = 571
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 145/367 (39%), Gaps = 96/367 (26%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL----PFKIESADQVKGLPGIGK 253
N I IF ++ ++ GED R+ +Y A IE L +E+ + + +P IG+
Sbjct: 5 NAEIASIFTQIADLLEIRGEDPFRTRAYRNAARTIENLGKDLSKMVEAGEDISKIPTIGE 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
+ + I+EIV TG+L+KLE+ + + + ++ GIGP A+ LY
Sbjct: 65 RIANKIREIVQTGRLAKLEYLKHSFPPHLLDIL-KIEGIGPKRAKILY------------ 111
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-------------- 359
Q L + + ++ H++ Q++ +K +++L +
Sbjct: 112 -------QELNIGSLEALRKAAEAHKISQLKGFSEKMEQKILKGTMLAKKEGKRFLYSVA 164
Query: 360 -------------------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKK 398
+ GS+RR K + GDLD++ D + Y +K+
Sbjct: 165 EPHAQALEAYLKNFSGAEQVTVAGSFRRRKETVGDLDILATSKDPAKLIDYFVNYPGIKE 224
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
+ R +I ++ + +D + + Y L +
Sbjct: 225 VVSHGDTRSTVILNSDLQ------------------------VDLRCVKAESYGAALHYF 260
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ N +R++A G ++++ GLF K G R + TE E+++ +G
Sbjct: 261 TGSKSHNIAVRIMARDMGMKVNEYGLF--------KNGKRIAGA----TEAEMYEGVGLR 308
Query: 519 WLEPHER 525
++EP R
Sbjct: 309 YIEPELR 315
>gi|367010826|ref|XP_003679914.1| hypothetical protein TDEL_0B05740 [Torulaspora delbrueckii]
gi|359747572|emb|CCE90703.1| hypothetical protein TDEL_0B05740 [Torulaspora delbrueckii]
Length = 578
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 119/254 (46%), Gaps = 27/254 (10%)
Query: 152 TNALSEAPNSPMSSESLTNTLSTASASPD--------FSSHHITDPS--------LLYNP 195
N+++E P+ + +S + T + + AS D S ++ PS L +
Sbjct: 129 VNSINEVPSEEVQYKSQSETAAGSHASADKHMDTGENLPSEKLSSPSEVPTERLTRLIDE 188
Query: 196 PDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIG 252
+KN + + G+L Y G+ RS Y A +E+ PF+I S +Q + + +G
Sbjct: 189 DKTSKNELLIKALGRLAKRYDVKGDRYRSRGYKLAKIGVERYPFEILSGEQARREIASVG 248
Query: 253 KSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
S+ IQ I+ TG L L E F+ ++K ++ + + +G +A++ G T ++
Sbjct: 249 SSIARKIQIILDTGGLPGLDEAFDLEKK---LNYYTQCHDVGVYSAKRWNLLGLTTFSEV 305
Query: 312 KNEDSLTH----SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 367
+ + G Y++D RI R E E++ ++++ +++ PE + GSY
Sbjct: 306 SKKFPEIFLRDWTVLFGWSYYEDWLKRISRAECEEVLKVVKDNLKQIDPEFKVELQGSYV 365
Query: 368 RGKASCGDLDVVIM 381
RG CGD+D++
Sbjct: 366 RGALECGDIDLLFF 379
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 439 HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 498
R+DF + WTG NR +R+ A KG +L GL+ R
Sbjct: 493 RRVDFFCCRWSELGAARLQWTGPKEFNRWIRIQAAQKGMKLTQHGLY------------R 540
Query: 499 ARTSL--KFDTEKEVFDFLGFPWLEPHERN 526
T+L FD E+ +F+ LG ++ P ERN
Sbjct: 541 GETTLLESFDEER-IFELLGEEYVGPEERN 569
>gi|357397843|ref|YP_004909768.1| PHP C-terminal domain-containing protein, partial [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|386353882|ref|YP_006052128.1| PHP C-terminal domain-containing protein, partial [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337764252|emb|CCB72961.1| PHP C-terminal domain-containing protein [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365804390|gb|AEW92606.1| PHP C-terminal domain-containing protein [Streptomyces cattleya
NRRL 8057 = DSM 46488]
Length = 573
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 142/351 (40%), Gaps = 64/351 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESAD--QVKGLPGIGKSM 255
N+ I + + ++ G D ++ +Y KA + + D Q++ +PG+G S+
Sbjct: 5 NEEIAGLIQEYADLLSVTGGDAFKARAYEKAARALGGHHADVSRLDVRQLREIPGVGASI 64
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGI---GPATAQKLYEK-GHRTLDDL 311
+ + E TG + L+ + + R S E+ I GP A L+E G ++D L
Sbjct: 65 AEKVAEYFRTGHIPALD----ERRTRIPSGVRELIRIPTLGPKKAMALHEDLGIASVDQL 120
Query: 312 -----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 354
K E++L H G+ RIP + Q + A V
Sbjct: 121 SAALDAGRLHGLKGFGPKTEENLRH----GITLLRQAGGRIPLDQALQTAEDVVAALSAV 176
Query: 355 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
V GS RR + + GD+DV++ D + ++ E+ E +
Sbjct: 177 PGCVRCAYAGSLRRMRETIGDVDVLVAAEDS-------APFMTAFTELPCAAEVI----- 224
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+ GT S + T G+ ++D +V P + GL +TG+ N LR +A
Sbjct: 225 AHGGTKSSLRTAEGV----------QVDLRVLPPAAWGAGLQYFTGSKAHNIGLRTIAVR 274
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G +L + GLF A G + +TE+EV+ LG PW+ P R
Sbjct: 275 HGLKLSEYGLFDADSGE----------LVVSETEEEVYARLGLPWIPPPMR 315
>gi|443629593|ref|ZP_21113915.1| putative PHP domain protein [Streptomyces viridochromogenes Tue57]
gi|443336889|gb|ELS51209.1| putative PHP domain protein [Streptomyces viridochromogenes Tue57]
Length = 593
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 158/361 (43%), Gaps = 73/361 (20%)
Query: 192 LYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL--- 248
+ P D + + + LI+I G+ ++ Y KA I + + D VKGL
Sbjct: 1 MARPNDEVAALLQEYADLISITG--GDAFKARVYEKAARAIGGHHADVSTLD-VKGLKEI 57
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKD--EKVRTISLFGEVWGIGPATAQKLYEK-GH 305
P +GKS+ + + E ++G++S +E VR ++ + +GP A LYE+ G
Sbjct: 58 PNVGKSIAEKVVEYFSSGRVSAVEELRAKIPAGVRQLT---AIPTLGPKKALVLYEELGI 114
Query: 306 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME--RLLQKAGEEVLPEV----- 358
T ++L + H +RL D+K P+ E + LLQ +G+ VL +V
Sbjct: 115 STTEELADA---IHEERL-----RDLKGFGPKTEENILHGISLLQSSGDRVLIDVAMGLA 166
Query: 359 ---------IILC-----GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 404
+ C GS RR + + GD+D+++ RK+ ++ E+ +
Sbjct: 167 EDIVAEMTRVTGCERCSYAGSLRRLRETIGDIDILVAA--RKA-----EPLMRAFTELPY 219
Query: 405 LREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
+ E + H E+ T V T GL ++D +V P D + + +TG+
Sbjct: 220 VSEVI---AHGEKKTS--VRTSKGL----------QVDLRVVPPDSWGAAMQYFTGSKAH 264
Query: 465 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
N R R LA + +L + GLF A G + +TE++V+ LG PW+ P
Sbjct: 265 NIRTRELAVRQKLKLSEYGLFDAESGK----------KIVSETEEDVYARLGLPWIPPTL 314
Query: 525 R 525
R
Sbjct: 315 R 315
>gi|193222378|emb|CAL62495.2| Putative DNA polymerase X [Herminiimonas arsenicoxydans]
Length = 576
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 148/352 (42%), Gaps = 66/352 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK----GLPGIGK 253
N ++ IF ++ ++ G++ R +Y A + L F +++ + K LPGIG
Sbjct: 5 NTDVATIFNQIADLLEIKGDNPFRIRAYRNAARTLNTLAFSVQTMVKEKRNLTDLPGIGI 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 312
+ I EIVTTG + E + E +I + G+GP + LY E+ +TLD L
Sbjct: 65 DLAGKIVEIVTTGTCALREQLHR-ELPSSIHELLNLPGLGPKRVKALYQERNIQTLDQLY 123
Query: 313 NEDS-----------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE-----EVLP 356
+ + QR+ L+ +++ R+ ++ E + AG + P
Sbjct: 124 SSACNGQIRNVPGFGIRTEQRI-LEAIRAQQSKKKRYRLDLAETI---AGSLLKYFQASP 179
Query: 357 EV-IILCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
V I GS+RR + + GDLD++I HPD F++ + I
Sbjct: 180 HVRKIDIAGSFRRRQETVGDLDILISSSHPDSVIQH--------------FIKFEEIVQV 225
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
++ T + V G+ ++D +V + L TG+ N +R LA+
Sbjct: 226 LAQGKTRASVVLRQGM----------QVDLRVVANVSFGAALYYSTGSKAHNIAVRTLAQ 275
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+G ++++ G+F G +TE VF +G P++EP R
Sbjct: 276 KRGLKINEYGVFSGAQRIAG------------ETELTVFQSVGLPYIEPELR 315
>gi|152991030|ref|YP_001356752.1| family X DNA polymerase IV [Nitratiruptor sp. SB155-2]
gi|151422891|dbj|BAF70395.1| DNA polymerase IV, family X [Nitratiruptor sp. SB155-2]
Length = 571
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 57/347 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 253
N I +IF + ++ GE+ + +Y A +E + +E + LPGIG
Sbjct: 5 NSEIAKIFNEYADLLEIKGENPFKVRAYRNAARTVENIGKSLEELVNEGYDLTKLPGIGT 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ +I+EIV TGK SKLE K+E T+ + G+GP + LYEK H ++++DL+
Sbjct: 65 DLSLYIKEIVKTGKFSKLEQI-KEEIPPTLVEMLSIEGLGPKRIKTLYEKLHIQSMEDLR 123
Query: 313 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEV-EQMERLLQKAGEEVLPEV 358
++L G+K R E E ++ LL+ + L +
Sbjct: 124 RAAESGEIEKLPGFGPTLVQKILKGVKLAKKAGQRFKWSEAKEYVDDLLEYLHQIELTHL 183
Query: 359 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
+ GS+RR K + GDLD++ D S+ ++ F++ I S
Sbjct: 184 EV--AGSFRRKKETVGDLDILATAKD-------FSEVIR-----HFIKYPKIKEVVSAGS 229
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
T S V L ++D + + Y L +TG+ N +R +A G +
Sbjct: 230 TRSTVILNNDL----------QVDLRSVEDESYGSALHYFTGSKAHNIEVRKIAIELGLK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F GK TE+EV+ +G ++EP R
Sbjct: 280 VNEYGVFKGNERIAGK------------TEEEVYQAVGLCYIEPELR 314
>gi|119480717|ref|XP_001260387.1| terminal deoxynucleotidyl transferase, putative [Neosartorya
fischeri NRRL 181]
gi|119408541|gb|EAW18490.1| terminal deoxynucleotidyl transferase, putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 281
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDSKIAALFAEFKASEHGTLAAADALDTDPVLK 398
Query: 282 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 338
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRP 458
Query: 339 EVEQMERLLQKAGEEVLP 356
E E + + + V P
Sbjct: 459 ETEAIAATITQHANRVRP 476
>gi|336323485|ref|YP_004603452.1| PHP domain-containing protein [Flexistipes sinusarabici DSM 4947]
gi|336107066|gb|AEI14884.1| PHP domain protein [Flexistipes sinusarabici DSM 4947]
Length = 569
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 151/347 (43%), Gaps = 57/347 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGK 253
N +I EI + ED R +Y A + L F I +S +++ + G+GK
Sbjct: 3 NASIAEILEEYAKYLEINNEDFFRVRAYNSAARSVLGLDFNIAEILKSGEELPKIKGVGK 62
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 312
++Q HI+EIV +G +LE K + + + ++ G+G A K++ E G +L +L+
Sbjct: 63 NIQGHIEEIVNSGTFHELEEI-KSNTPQILIVMNKIPGVGAKKAFKIHKELGVNSLGELE 121
Query: 313 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-------- 361
E+ L G K + I I ++ RLL A EE ++
Sbjct: 122 YACIENRLAMLDGFGEKSQNKILKNIEYVKLSMQRRLLADA-EETAEKIHSFFESIDYVE 180
Query: 362 ---CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GSYRR + DLD+VI+ S + K+ + F E EG
Sbjct: 181 KYEIAGSYRRKLETVKDLDLVIVAQGE-------SNVLDKIAKEGFFDE-------IREG 226
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+ + L P +D + + +D + L +TG+ + RLR +A+SK ++
Sbjct: 227 GEKKISA--ALDGLP-------VDLRCFEKDDFYTALHHFTGSKAHHERLRGIAKSKNFK 277
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F G K+ LK +E+E+++ LG ++ P R
Sbjct: 278 INEYGIF-----QGDKK-------LKVSSEEEIYEILGLHYIPPELR 312
>gi|116754615|ref|YP_843733.1| phosphotransferase domain-containing protein [Methanosaeta
thermophila PT]
gi|116666066|gb|ABK15093.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
Length = 588
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 152/364 (41%), Gaps = 63/364 (17%)
Query: 188 DPSLLYNPPDLN----KNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA 242
+PSLLY+ N K I I ++ + GE+R + +Y +A IE L IE
Sbjct: 5 EPSLLYHLVRFNHVRNKEIAAILYEMGELLEIRGENRFKVIAYSRAARAIESLKEDIEDV 64
Query: 243 ---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
++ +PG+GK++ + I E +TTG + + L ++ G+GP T
Sbjct: 65 WRRGELDRIPGVGKAIAEKISEYLTTGHIKAYDDLVSSTPKGMKELL-QLQGVGPKTVAL 123
Query: 300 LYEK-GHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHE--------------VE 341
L+EK G T+D+L+ +RL G +I I RH VE
Sbjct: 124 LHEKLGVSTVDELEAAARQHRIRRLPGMGPTKEANILKAIERHRRRSTRIPLSVAVRIVE 183
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
+ R L+ G E L + + GSYRRGK + GD+D ++ R S ++ +V+
Sbjct: 184 HIMRHLE--GIEGLSNITV--AGSYRRGKETVGDID-ILATSSRPSES--IAAFVRMPMV 236
Query: 402 MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGN 461
L + ++ EGT ++D ++ Y L +TG+
Sbjct: 237 DDILGQGPTKASIIIEGTV-------------------QVDLRIVEPRSYGTLLQYFTGS 277
Query: 462 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
N +LR +A +GY L + L G L FD E++V+ LG ++
Sbjct: 278 KEHNVKLRGIALQRGYSLSEYSLKRLDTGE----------ELFFDREEDVYKALGMQYIP 327
Query: 522 PHER 525
P R
Sbjct: 328 PELR 331
>gi|448572783|ref|ZP_21640544.1| DNA polymerase X [Haloferax lucentense DSM 14919]
gi|445719555|gb|ELZ71234.1| DNA polymerase X [Haloferax lucentense DSM 14919]
Length = 582
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 139/347 (40%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQKIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAYLGDYDAVG 181
Query: 364 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D ++ +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 EQKASVRVNGM----------RVDLRVVEPSEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G RA T + DTE ++ L P + P R
Sbjct: 279 MNEYGMFDISDVDDPDDGPRAGTRVAGDTEASMYAALDLPLVPPELR 325
>gi|113913511|gb|ABI48899.1| POL4 [Saccharomyces pastorianus]
Length = 583
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-ADQVKGLPGIGKSMQD 257
N+ + E +L Y GE R+ Y A +E F I S A+ L IG S+
Sbjct: 189 NELVIEALKRLTKKYEIKGERFRARGYRLAKQSVENCDFDISSGAEAHTKLRNIGPSIAR 248
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK--LYEKGHRTLDDLKNED 315
IQ I+ TG L L E ++ F +G+GP A++ L + K+ D
Sbjct: 249 KIQVILDTGALPGLNDSMGLED--KLNYFKNCYGVGPEIAKRWNLLSYESFCIASKKDPD 306
Query: 316 SLTH--SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
S G Y+DD ++ R+E ++Q A E+ P+ ++ GSY RG + C
Sbjct: 307 DFISDWSVLFGWSYYDDWLHKMSRNECLAHLDVVQNALNEIDPDCLVELQGSYNRGYSKC 366
Query: 374 GDLDVVIMHP 383
GD+D++ P
Sbjct: 367 GDIDLLFFKP 376
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 397 KKLKEMKFLREDL-IFSTHSEEGTD-SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
KKL E+K + D F EE T +D Y L + R R+DF D G
Sbjct: 455 KKLGELKEVDTDEGTFLIEEEEETKLKPIDQYMSLNSKDENYCR-RLDFFCCKWDELGAG 513
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
I +TG+ NR +R+LA KG++L GLF R L+ E ++F+
Sbjct: 514 RIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RDSVLLESFNEYKIFEL 561
Query: 515 LGFPWLEPHERN 526
L ++EP +RN
Sbjct: 562 LDLKYVEPKDRN 573
>gi|448582195|ref|ZP_21645699.1| DNA polymerase X [Haloferax gibbonsii ATCC 33959]
gi|445731843|gb|ELZ83426.1| DNA polymerase X [Haloferax gibbonsii ATCC 33959]
Length = 583
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 137/347 (39%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAAEGEDAVQEIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG + +LE D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGSIEELEELRADLPVDMAGLTS-VEGVGPKTVGKLYEALGVADLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
+ + + G K +I I LL KA V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTEANILDGIEFAREATGRELLGKA-RPVADDLLSYLGDHDAVG 181
Query: 364 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D ++ +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 EQKASVRVNGM----------RVDLRVVAPAEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G RA T + DTE+ ++ L P + P R
Sbjct: 279 MNEYGMFDVSDVDDPDDGPRAGTRVAGDTEESMYAALDLPLVPPELR 325
>gi|448369652|ref|ZP_21556204.1| PHP domain-containing protein [Natrialba aegyptia DSM 13077]
gi|445650827|gb|ELZ03743.1| PHP domain-containing protein [Natrialba aegyptia DSM 13077]
Length = 593
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 153/357 (42%), Gaps = 54/357 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI----ESADQ--VKGLPGIG 252
N I F + ++ A + + +Y +A + P I E+ D+ ++ + G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENVRAHPSPIADYVEAGDRDAIEDIDGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG + +LE + + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIATKIVEYVETGSIDELEELQAELPI-DIADITRIEGVGPKTAGKLYHELGIETLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEV-----II 360
+ Q + G K +I+ I +LL +A ++VL E+ +
Sbjct: 123 EAAAEANEIQAVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVLAELEGIEEVE 182
Query: 361 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
C GS RR + + GD+DV++ D ++ + ++V+ +
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLVGTNDNEA---VIEQFVEW------------------DS 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
DS +++ G R R+D +V D + L +TG+ N LR A +G +
Sbjct: 222 VDSEIES--GPAKASVRVGEIRVDLRVVVPDEFGAALQYFTGSKDHNVSLRNYAIDRGLK 279
Query: 479 LDDTGLFPATYGSGGKQG----------VRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G G R L +TE+ +++ LG W+ P R
Sbjct: 280 VNEYGVFDVSEVDAGPDGDGSDSATDGSQRVGDRLAGETEEGMYEALGLDWMPPELR 336
>gi|292654904|ref|YP_003534801.1| DNA polymerase X [Haloferax volcanii DS2]
gi|448292878|ref|ZP_21483199.1| DNA polymerase X [Haloferax volcanii DS2]
gi|291371449|gb|ADE03676.1| DNA polymerase X [Haloferax volcanii DS2]
gi|445571853|gb|ELY26396.1| DNA polymerase X [Haloferax volcanii DS2]
Length = 582
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 139/347 (40%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQEIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTETNILDGIEFAREATGRELLGRA-RPVADDLLTYLGDYDAVG 181
Query: 364 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D ++ +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 EQKASVRVNGM----------RVDLRVVEPSEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G RA T + DTE ++ L P + P R
Sbjct: 279 MNEYGMFDTSDVDDPDDGPRAGTRVAGDTEASMYAALDLPLVPPELR 325
>gi|365761819|gb|EHN03448.1| Pol4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 545
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 19/218 (8%)
Query: 182 SSHHITDP-------SLLYNPPDLNKN---ITEIFGKLINIYRALGEDRRSFSYYKAIPV 231
+S + DP +LL N KN I E +L Y GE R+ SY A
Sbjct: 157 TSQPVKDPVYSNESTTLLVNNKSKYKNNELIVEALKRLTKKYEVKGEKFRARSYRLAKQS 216
Query: 232 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 290
IE F I S ++ L IG S+ IQ I+ TG L L E ++ F +
Sbjct: 217 IENCDFDISSGEEAHTKLRNIGPSIARKIQIILDTGVLPGLNDSIGLED--SLKYFKNCY 274
Query: 291 GIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE-VEQMER 345
GIGP A++ +E + E S G Y++D ++ R+E + +ER
Sbjct: 275 GIGPEIAKRWNLLNFESFCSAAKNDPEEFISDWSVLFGWSYYEDWLRKMSRNECLAHLER 334
Query: 346 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ GE + PE + GSY RG + CGD+D++ P
Sbjct: 335 VKSSLGE-IDPECQVELQGSYNRGYSKCGDIDLLFFKP 371
>gi|149919633|ref|ZP_01908112.1| PHP-like protein [Plesiocystis pacifica SIR-1]
gi|149819576|gb|EDM79004.1| PHP-like protein [Plesiocystis pacifica SIR-1]
Length = 743
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 151/349 (43%), Gaps = 49/349 (14%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKGLP---GI 251
P N I +F ++ ++ + G DR R ++ ++ +IE LP + LP G+
Sbjct: 2 PLENTEIAAMFVEMADLLQIKGGDRHRVGAFRRSARIIEGLPRPAAQMLERGELPKIRGV 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
GK I++++ L+ + + L ++ GIGP + ++ + G TLD
Sbjct: 62 GKGTIHRIKQMLRRHSCDDLDELRRSVPLGLRELL-KIKGIGPTMVRNIHNRLGVTTLDQ 120
Query: 311 LKNED-----------SLTHSQRL--GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 357
L++ L+H+Q++ G++ + + + + E++ R + A E LP
Sbjct: 121 LEHAAKAGAIETIPRMGLSHAQKILAGIEAYRKRRGKTALIDAERVGRRIVAALRE-LPA 179
Query: 358 V-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
V I GS RR KA+ GDLDV++ D L+++ + L E+ E ++
Sbjct: 180 VEGIALAGSVRRRKATIGDLDVLVATRDPAP---VLARF-QTLPEV----ESVLIGGRGT 231
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
EG C+ R + + D ++ P + GL +TG+ N LR A + G
Sbjct: 232 EGR----------CSVRLRN-QQQADLRLLPPASFGAGLHYFTGSKQHNIELRKRANAMG 280
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ D G+F G G E+ VF LG PW+ P R
Sbjct: 281 LKVSDKGVF-HREGEALIDGC--------ADEEAVFRHLGLPWIAPELR 320
>gi|198284782|ref|YP_002221103.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666221|ref|YP_002427466.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198249303|gb|ACH84896.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518434|gb|ACK79020.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 576
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 148/363 (40%), Gaps = 82/363 (22%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVI----EKLPFKIESADQVKGL 248
P LN +I F ++ ++ ED F +Y A ++ L +E+ + + L
Sbjct: 2 PVLNPDIARAFDEIADLLEI--EDANPFRVRAYRTAARLVLGLSSDLKTMVEAGEDLTEL 59
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 308
PGIG+ + I EIVTTG S LE EK L +V G+GP + L+ +
Sbjct: 60 PGIGEDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHEL---- 114
Query: 309 DDLKNEDSLTHSQRLG----------------LKYFDDIKTRIPRHEV-------EQMER 345
D++ D LT + R G L+ +PR + + R
Sbjct: 115 -DVETVDQLTRAAREGRIRSIPGFGEKTEARILEALQAQIAAVPRFPIAVAAPYAAALVR 173
Query: 346 LLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 404
LQ +P V ++ GS+RRG+ + GDLD++ + S +++ +
Sbjct: 174 YLQN-----VPGVRRVVVAGSFRRGRDTVGDLDIL-------ATATADSPVMERFTAYED 221
Query: 405 LREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHR--IDFKVYPRDIYAFGLIAWTGND 462
+ E +FS + T LR++ +D + Y L +TG+
Sbjct: 222 VAE--VFSQGTTRATVI---------------LRNKLQVDLRAVDESSYGAALHYFTGSK 264
Query: 463 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
N +R + + G ++++ GLF R + + DTE+ V+ +G P++EP
Sbjct: 265 SHNIAIRRMGQDMGLKVNEYGLF------------RGKERIAGDTEESVYAAVGLPYIEP 312
Query: 523 HER 525
R
Sbjct: 313 ELR 315
>gi|20067745|emb|CAD29113.1| chimeric DNA-directed DNA polymerase xf4-5n [synthetic construct]
Length = 191
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 361 LCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLR-EDLIFSTHS 415
+ GS+RRG S GD+DV++ HP+ S L + V++L++++F+R + L FS
Sbjct: 34 IVAGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFIRIKGLSFSVKV 93
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
+ + TY +L P+D Y G++ +TG+D+ N+ +R A K
Sbjct: 94 CGERKCVLFIEWEKKTY---QLDLFTALAEEPKDQYYCGVLYFTGSDIFNKNMRAHALEK 150
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
Y+L+ GLF + LK TEKE+ LGF + P +R
Sbjct: 151 NYKLNQYGLFKN----------QTLVPLKITTEKELIKELGFTYRIPKKR 190
>gi|20067737|emb|CAD29109.1| chimeric DNA-directed DNA polymerase xf4-7b [synthetic construct]
Length = 190
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 33/202 (16%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P++K
Sbjct: 16 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSLRREEKMLNDVDLLIIVPEKKLL 75
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDF 443
K L +F+ + L G + G+C P E H RID
Sbjct: 76 KHVLPN--------RFITDTL----------SKGETKFMGVCQLPSENDENEYPHRRIDI 117
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
++ P + + + +TG R+R + K Y+L+ GLF + L
Sbjct: 118 RLIPAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKN----------QTLVPL 167
Query: 504 KFDTEKEVFDFLGFPWLEPHER 525
K TEKE+ LGF + P +R
Sbjct: 168 KITTEKELIKELGFTYRIPKKR 189
>gi|380470941|emb|CCF47516.1| DNA polymerase mu [Colletotrichum higginsianum]
Length = 233
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 85/202 (42%), Gaps = 38/202 (18%)
Query: 357 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS- 415
E++I+ G YRRGK GD+DVVI H D + F++K V L++ + + L S H+
Sbjct: 34 ELVIV--GGYRRGKQGSGDVDVVISHRDESATLHFVNKLVVSLEKSRHITHTLTLSNHNS 91
Query: 416 -----------EEGTDSGVDTY-FGLCTYPGREL--------------RHRIDFKVYPRD 449
E SG DT L + E+ R+D + P
Sbjct: 92 ERGQRPVSWKGNESKGSGFDTLDKALVVWQELEIESHKRYPKETKEKPHRRVDIIISPWK 151
Query: 450 IYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGS-----GGKQGVRARTSL 503
++ W+G+ R L R + K ++ D +G+ GS GGK G +
Sbjct: 152 TVGCAVLGWSGDTTFQRDLRRYCKKQKSFKFDSSGIRSRVDGSWIDLEGGKLG---KAPD 208
Query: 504 KFDTEKEVFDFLGFPWLEPHER 525
EK VF+ LG W+ P +R
Sbjct: 209 MLTAEKRVFEGLGLEWVRPEDR 230
>gi|448597005|ref|ZP_21654143.1| DNA polymerase X [Haloferax alexandrinus JCM 10717]
gi|445740886|gb|ELZ92391.1| DNA polymerase X [Haloferax alexandrinus JCM 10717]
Length = 582
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 139/347 (40%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQEIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQAVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLTYLGDYDAVG 181
Query: 364 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D ++ +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 EQKASVRVNGM----------RVDLRVVEPSEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G RA T + DTE ++ L P + P R
Sbjct: 279 MNEYGMFDISDVDDPDDGPRAGTRVAGDTEASMYAALDLPLVPPELR 325
>gi|375096600|ref|ZP_09742865.1| DNA polymerase IV (family X) [Saccharomonospora marina XMU15]
gi|374657333|gb|EHR52166.1| DNA polymerase IV (family X) [Saccharomonospora marina XMU15]
Length = 578
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 142/320 (44%), Gaps = 59/320 (18%)
Query: 224 SYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 281
+Y KA +E P ++ + + ++ +P +G + I+E + TG + +L+
Sbjct: 31 AYEKAAQAVEGHPAELATLRSAELDEIPNVGSQLARKIREFLDTGSVGELDELRARVPTG 90
Query: 282 TISLFGEVWGIGPATAQKLYEK-GHRTLDDL-----------------KNEDSLTHSQRL 323
SL + G+GP A+++YE+ G + DDL ++ED+L + R
Sbjct: 91 LRSLL-TIPGLGPRRARQVYEELGITSPDDLLAALHEHRLRELRGWGARSEDNLAAAVRE 149
Query: 324 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 382
+ ++ + + ERLLQ+ LP+V + GS RR + S GD+D+++
Sbjct: 150 AQSAGERVRLGL---ALGVAERLLQRL--RPLPQVQRVEYAGSLRRMRDSIGDIDILVAS 204
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRID 442
D + ++ + E+ + E +I S T + V T GL ++D
Sbjct: 205 DDPE-------PIMRAVTELPVV-ERVI----SHGSTRTSVLTATGL----------QVD 242
Query: 443 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
+V + L+ +TG+ N +LR LA G +L + GLF V
Sbjct: 243 VRVVAPPSWGAALLYFTGSKAHNIQLRELALRAGLKLSEYGLFE----------VETDRR 292
Query: 503 LKFDTEKEVFDFLGFPWLEP 522
+ + E+EV+ LG PW+EP
Sbjct: 293 VAGEREEEVYARLGLPWIEP 312
>gi|441497932|ref|ZP_20980137.1| DNA polymerase X family [Fulvivirga imtechensis AK7]
gi|441438269|gb|ELR71608.1| DNA polymerase X family [Fulvivirga imtechensis AK7]
Length = 581
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 152/356 (42%), Gaps = 65/356 (18%)
Query: 197 DLNKNITEIFGKLINIYRALGEDR--RSFSYYKAIPVIEKLPFKIE---SADQVKGLPGI 251
D NK + I L ++YR LG + ++ +Y KA I+ LP I V+ +PG+
Sbjct: 3 DHNKQLAAILHDLGSMYRYLGGENLFKAIAYMKASQAIKGLPGDISVYLKDGTVRDIPGV 62
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH------ 305
G+S++ I+E +TG +++ E+ K + L ++ G GP + ++L++ H
Sbjct: 63 GESLEKDIREFTSTGTVTRFENLIKIVPHGLMELI-DISGFGPQSLKRLHQDLHIETKEE 121
Query: 306 --RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE---------EV 354
+ L+D + + + G K +++ + H+ + LL A E +
Sbjct: 122 VVKALEDGR----IGQLKGFGPKKVENMLRGLKLHKHVEERMLLCDALEVSEKLLTLLKA 177
Query: 355 LPEVI-ILCGGSYRRGKASCGDLDVV--IMHPDRKSHKGFL--SKYVKKLKEMKFLREDL 409
LPEV + GS RR K + GDLD++ + DRK SK +K+ R +
Sbjct: 178 LPEVKRVELAGSLRRKKETIGDLDILAAVNIKDRKKVIAVFTDSKLAQKVLAKGDTRVSI 237
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
I ++++ D ++ + L +TG+ N LR
Sbjct: 238 IMKENAKQA-----------------------DLRMVDESEWGAALQYFTGSKDHNIHLR 274
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A KGY++ + G+F + + TE+E++ LG ++ P R
Sbjct: 275 GIARDKGYKISEYGIF----------NIHNHKRIAGKTEEELYSQLGMQYIPPEMR 320
>gi|448377467|ref|ZP_21560163.1| PHP domain protein [Halovivax asiaticus JCM 14624]
gi|445655411|gb|ELZ08256.1| PHP domain protein [Halovivax asiaticus JCM 14624]
Length = 591
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 143/363 (39%), Gaps = 68/363 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 252
N + F + ++ A + + +Y +A I P I A D V + G+G
Sbjct: 4 NAELAARFEEFADLLEADDVEYKPRAYRRAAENILAHPVPIAEAVESGDEDAVDDIEGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG++ +LE + V IS V G+GP T LY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIEELEDLRAELPV-DISDLTRVEGVGPKTVGTLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRLG----------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 361
+ Q + L+ D +T RH V + L ++VL + +
Sbjct: 123 ETAAEAGEIQDVKGFGAKTEQNILENIDFARTVGQRHLVGEARPL----ADDVLGYLEGI 178
Query: 362 CG-------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
G GS RR + + GD+DV + E + +D +
Sbjct: 179 AGVERCEVAGSIRRWRETIGDVDV-----------------LAATDEPDAVVDDFLAWDS 221
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
++ +SG R R+D ++ D + L +TG+ N RLR A
Sbjct: 222 IDDEIESGP------AKASVRVGEVRVDLRLVVPDEFGSALQYFTGSKAHNVRLRNYAID 275
Query: 475 KGYRLDDTGLF------------PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
+G +L++ G F P G G + G R + +TE+ ++D LG PW+ P
Sbjct: 276 RGMKLNEYGAFDVSKLDADPDADPQHVGGGQRVGER----VAGETEESMYDALGLPWIPP 331
Query: 523 HER 525
R
Sbjct: 332 ELR 334
>gi|448362121|ref|ZP_21550733.1| PHP domain-containing protein [Natrialba asiatica DSM 12278]
gi|445648991|gb|ELZ01935.1| PHP domain-containing protein [Natrialba asiatica DSM 12278]
Length = 594
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 53/310 (17%)
Query: 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 301
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQTELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 302 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 355
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQAVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 356 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
E + C GS RR + + GD+DV++ D ++ + ++V+
Sbjct: 173 AFLEGIEEVERCEVAGSIRRWRETIGDVDVLVGTNDNEA---VIEQFVEWGS-------- 221
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
DS +++ G R R+D +V D + L +TGN N L
Sbjct: 222 ----------VDSEIES--GPAKASVRVGEIRVDLRVVVPDEFGAALQYFTGNKDHNVSL 269
Query: 469 RLLAESKGYRLDDTGLF-----------PATYGS--GGKQGVRARTSLKFDTEKEVFDFL 515
R A +G ++++ G+F A GS GG Q + R L +TE+ +++ L
Sbjct: 270 RNYAIDRGLKVNEYGVFDVSEVDAGPDGSAESGSATGGSQRIGDR--LAGETEEGMYEAL 327
Query: 516 GFPWLEPHER 525
G W+ P R
Sbjct: 328 GLSWMPPELR 337
>gi|397773040|ref|YP_006540586.1| PHP domain protein [Natrinema sp. J7-2]
gi|397682133|gb|AFO56510.1| PHP domain protein [Natrinema sp. J7-2]
Length = 583
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 149/348 (42%), Gaps = 44/348 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 252
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVENIDGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIDELEALRAELPI-DIAAITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 360
+ Q + G K +I + +LL +A ++VL +
Sbjct: 123 ETVAEAGEVQEIKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPAVD 182
Query: 361 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
C GS RR + + GD+DV+ D ++ + ++V + E
Sbjct: 183 RCEVAGSIRRWRETVGDVDVLAATADGEA---VVERFV------------------AWES 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
D +++ G R R+D +V + L +TG+ N LR A +G +
Sbjct: 222 VDDEIES--GPEKASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRGMK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L++ G F + + + R + +TE+ +++ LG PW+ P R
Sbjct: 280 LNEYGAFNVSDIADHEADQRIGDRVAGETEEGMYEALGLPWIPPELRT 327
>gi|448561173|ref|ZP_21634525.1| DNA polymerase X [Haloferax prahovense DSM 18310]
gi|445721405|gb|ELZ73073.1| DNA polymerase X [Haloferax prahovense DSM 18310]
Length = 582
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 137/347 (39%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAAEGEDAVQEIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG++ +LE D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELEELRADLPVDMAGLTS-VEGVGPKTVGKLYEALGVADLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG----- 364
+ + + G K +I I LL KA V +++ GG
Sbjct: 123 AAARDGKIQEVKGFGAKTEANILDGIEFAREATGRELLGKA-RPVADDLLAYLGGHDAVG 181
Query: 365 ------SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
S RR + + GD+DV+ D ++ +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 EQKASVRVNGM----------RVDLRVVDPAEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G RA + DTE+ ++ L P + P R
Sbjct: 279 MNEYGMFDISDVDDPDDGPRAGARVAGDTEESMYAALDLPLVPPEMR 325
>gi|383621730|ref|ZP_09948136.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
gi|448702579|ref|ZP_21700012.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
gi|445777140|gb|EMA28110.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
Length = 583
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 147/349 (42%), Gaps = 48/349 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES------ADQVKGLPGIG 252
N I F + ++ A + + +Y +A + P I D ++ + G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENVRSHPTPIADYVAEGDRDAIEDIDGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG + +LE + + I+ V G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGSIDELEELRAELPI-DIADITRVEGVGPKTAGKLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK--------AGEEVLP-----EV 358
E++ + + +K F + R +E ++ Q+ ++VL E
Sbjct: 123 --EEAAENGEIQEVKGFGPKTEQNIRDNLEFARQVGQRYLLGEGRPLADDVLAFLESLEE 180
Query: 359 IILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
+ C GS RR + + GD+DV+ S + + ++V
Sbjct: 181 VDRCEVAGSIRRWRETIGDVDVLAA---TDSPEAVVERFVDW------------------ 219
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
+ D +++ G R RID +V + + L +TG+ N LR A +G
Sbjct: 220 DSVDGEIES--GPAKASVRVGEIRIDLRVVAPEEFGSALQYFTGSKDHNVTLRNYAIDRG 277
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+L++ G F + ++G R + +TE+ +++ LG PW+ P R
Sbjct: 278 MKLNEYGAFDVSDLEDAEEGQRVGDRVAGETEEGMYEALGLPWIPPELR 326
>gi|401838825|gb|EJT42265.1| POL4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 579
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 19/218 (8%)
Query: 182 SSHHITDP-------SLLYNPPDLNKN---ITEIFGKLINIYRALGEDRRSFSYYKAIPV 231
+S + DP +LL N KN I E +L Y GE R+ SY A
Sbjct: 157 TSQPVKDPVYSNESTTLLVNNRSKYKNNELIVEALKRLTKKYEVKGEKFRARSYRLAKQS 216
Query: 232 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 290
IE F I S ++ L IG S+ IQ I+ TG L L E ++ F +
Sbjct: 217 IENCDFDISSGEEAHTKLRNIGPSIARKIQIILDTGVLPGLNDSIGLED--SLKYFKNCY 274
Query: 291 GIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE-VEQMER 345
GIGP A++ +E + E S G Y++D ++ R+E + +ER
Sbjct: 275 GIGPEIAKRWNLLNFESFCSAAKNDPEEFISDWSVLFGWSYYEDWLRKMSRNECLAHLER 334
Query: 346 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ GE + PE + GSY RG + CGD+D++ P
Sbjct: 335 VKSSLGE-IDPECQVELQGSYNRGYSKCGDIDLLFFKP 371
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 393 SKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYA 452
++ +++LKEM + E F EE +D Y L + G R R+DF D
Sbjct: 449 TRKLEELKEMD-IDEGTFFIEQEEETKLKPIDQYMSLNSRDGNYCR-RLDFFCCKWDELG 506
Query: 453 FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVF 512
G I +TG+ NR +R+LA KG +L GLF R L+ E+ +F
Sbjct: 507 AGRIHYTGSKEYNRWIRILAAQKGLKLTQHGLF------------RDNILLESFNERRIF 554
Query: 513 DFLGFPWLEPHERN 526
+ L ++EP +RN
Sbjct: 555 ELLNLKYVEPKDRN 568
>gi|319956700|ref|YP_004167963.1| php domain-containing protein [Nitratifractor salsuginis DSM 16511]
gi|319419104|gb|ADV46214.1| PHP domain protein [Nitratifractor salsuginis DSM 16511]
Length = 578
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 147/348 (42%), Gaps = 57/348 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFK----IESADQVKGLPGIGK 253
N I + F +L + G++ R +Y A IE + +E + LP IG+
Sbjct: 8 NSEIAQFFKELADYLEIKGDNPFRIRAYRNAARTIETSGYDFAKLVEEGYDLSQLPDIGE 67
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
+ I EIVTTGKLSKLE +K+ + L ++ G+GP + LYEK G +L++LK
Sbjct: 68 RIAKKIVEIVTTGKLSKLEEVKKEFPPHILDLL-KIEGLGPKKVKTLYEKLGIGSLEELK 126
Query: 313 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA------------GEEVLPE 357
E + G K + I + ++ E L +A G + + +
Sbjct: 127 KAAEEHKIRELPGFGEKTEEKILKGVVLYKKEGKRFLFAEAEPYASELYEYLKGFKAIHQ 186
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
+ I GS+RR K + GDLD+V D + Y K+KE+ S+
Sbjct: 187 LTI--AGSFRRRKETVGDLDIVSTSDDPLGAMDHFASY-GKIKEIV-----------SKG 232
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
T S + L ++DF+ Y L +TG+ N +R +A KG+
Sbjct: 233 DTRSTIILENNL----------QVDFRCVSDLSYGAALHYFTGSKAHNIAVRKMAVEKGW 282
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F + TE+E++ G ++EP R
Sbjct: 283 KVNEYGVFNEKM-----------ERIAGKTEEEIYRLFGMDYIEPELR 319
>gi|448399930|ref|ZP_21571148.1| PHP domain protein [Haloterrigena limicola JCM 13563]
gi|445668052|gb|ELZ20686.1| PHP domain protein [Haloterrigena limicola JCM 13563]
Length = 583
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 146/347 (42%), Gaps = 44/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 252
N + F + ++ A G + + +Y +A + P ++++ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENVRAYPSPIADRVDAGDREAVESIEGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG + +LE + + + + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGSIEELEELRAELPIDMADIT-RIEGVGPKTAGKLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 360
+ Q + G K +I + +LL +A ++VL + +
Sbjct: 123 EAAAEAGEVQEVKGFGPKTEQNILDNLEFARTVGQRQLLGEARPLADDVLAFLESIDAVE 182
Query: 361 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
C GS RR +A+ GD+D ++ RED+I + E
Sbjct: 183 RCEVAGSIRRWRATIGDVDALVATD---------------------AREDVIDQFVAWES 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
D +++ G R R+D +V + + L +TG+ N LR A +G +
Sbjct: 222 VDDEIES--GPEKASVRVGEIRVDLRVVVPEEFGSALQYFTGSKDHNVSLRNYAIDRGMK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ G F G R + +TE+ ++D LG PW+ P R
Sbjct: 280 LNEYGAFDVNEIDDPDSGQRVGERVAGETEESMYDALGLPWIPPELR 326
>gi|429198766|ref|ZP_19190565.1| PHP domain protein [Streptomyces ipomoeae 91-03]
gi|428665535|gb|EKX64759.1| PHP domain protein [Streptomyces ipomoeae 91-03]
Length = 587
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 150/354 (42%), Gaps = 70/354 (19%)
Query: 199 NKNITEIFGKLINIYRALG-EDRRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKS 254
N + +F + ++ G E ++ Y KA + + + D VKGL P +GKS
Sbjct: 5 NDEVAALFAEYADLISITGGEAYKARVYEKAARSVGGYHADVSTLD-VKGLQEIPNVGKS 63
Query: 255 MQDHIQEIVTTGKLSKLEHFEKD--EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 311
+ + I E TG +S +E VR ++ + +GP A LYE+ G ++++L
Sbjct: 64 IAEKIVEYFRTGSVSAVEEVRAKIPAGVRRLT---AIPTLGPKKACVLYEELGIASVEEL 120
Query: 312 KNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV------------ 358
+ H +RL LK F H +E LLQ +G+ VL +V
Sbjct: 121 ADA---IHEERLRDLKGFGPKTEENILHGIE----LLQSSGDRVLLDVAMDLAEDVVTEL 173
Query: 359 --IILC-----GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
+ C GS RR + + GD+DV++ + ++ E+ ++ E +
Sbjct: 174 SRVTGCRKCTYAGSLRRIRETIGDIDVLVAAEKP-------APLMRAFTELPYVSEVI-- 224
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
H E+ T + T GL +D +V P D + L +TG+ N R R L
Sbjct: 225 -AHGEKKT--SIRTTKGLA----------VDLRVVPPDSWGAALQYFTGSKAHNIRTREL 271
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A + +L + GLF A G + +TE++V+ LG PW+ P R
Sbjct: 272 ALHQKLKLSEYGLFDAESGK----------KIVSETEEDVYARLGLPWIPPALR 315
>gi|395645114|ref|ZP_10432974.1| PHP domain protein [Methanofollis liminatans DSM 4140]
gi|395441854|gb|EJG06611.1| PHP domain protein [Methanofollis liminatans DSM 4140]
Length = 561
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 141/340 (41%), Gaps = 51/340 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPGIGKSM 255
N+ + + G++ + GE+ + +Y +A I+ L P S + ++ +PG+G+++
Sbjct: 5 NREVARLLGEIGALLEIQGENPFKIRAYTRAAEQIDHLAEPISSLSTEDLEAIPGVGEAI 64
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDDL 311
IQ+I+ G ++LE I L ++ G+GP T +KL+ G L+
Sbjct: 65 AGKIQDILNAGTCAELERLRAATPPGLIRLL-DLNGVGPKTVRKLWTGLGVDGIEALEAA 123
Query: 312 KNEDSLTHSQRLGLKYFDDIKTRI--PRHEVEQMERLLQKAGEEVLPEVI---ILCGGSY 366
+ + G K DDI I R +M R + L I GS
Sbjct: 124 ARSRRIRALKGFGAKKEDDILKAIAEAREGAGRMNRAEAERLAAALTAAIPGDSWVAGSL 183
Query: 367 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTY 426
RRG+++ GD+D+V P R++ S ++++ + + S
Sbjct: 184 RRGRSTIGDIDIVTTAPPRET-----SLALRRIADAVIDEGERKIS-------------- 224
Query: 427 FGLCTYPGRELRHRIDFKVY-PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
T GR R D + P I A LI TG+ N RLR +A K RL++ GL
Sbjct: 225 ---VTVGGR----RADIRFADPGSIGAM-LIYLTGSKAFNIRLREIAGRKEMRLNEYGL- 275
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GSG Q F TE+ VF LG + P R
Sbjct: 276 -TDRGSGNLQ--------IFPTEEGVFSALGMSQVPPELR 306
>gi|154300650|ref|XP_001550740.1| hypothetical protein BC1G_10913 [Botryotinia fuckeliana B05.10]
Length = 461
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 120/270 (44%), Gaps = 21/270 (7%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
+Y +I I P+ + S +++ LPG + + + + + + TG ++ FE++ +++ +
Sbjct: 171 AYSTSIASIAAYPYPLHSPNELIRLPGCDQKIANLLHQFLNTGTTDEVFDFEQNPRMQVL 230
Query: 284 SLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEV 340
F +WG+ TA++ + ++ + LDD+ E + L Q++G+KY++++ T IPR E
Sbjct: 231 KTFYNIWGVADITAREFHDQREWKDLDDIVVEGWNDLKPVQKIGVKYYEELNTPIPRCET 290
Query: 341 EQMERLLQKAGEEVLP-----EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 395
E + ++ + P + + S + + +++ D GF S
Sbjct: 291 EAIGSIILSEARRIDPGFQMGWITHISAESMKNSERGQWAVELG-WKKDSARKTGFDS-- 347
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGL 455
L + + +D+ F EEG + R+D + P +
Sbjct: 348 ---LDKALVVWQDINFRIEEEEGEGKERKKRKNPNPH------RRVDIIITPWKTAGAAI 398
Query: 456 IAWTGNDVLNRRLRLLAESK-GYRLDDTGL 484
I W+G R LR ++K +R D +G+
Sbjct: 399 IGWSGGTTFQRDLRKYCKAKRNWRFDSSGI 428
>gi|334341003|ref|YP_004545983.1| PHP domain-containing protein [Desulfotomaculum ruminis DSM 2154]
gi|334092357|gb|AEG60697.1| PHP domain protein [Desulfotomaculum ruminis DSM 2154]
Length = 569
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 66/304 (21%)
Query: 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EK 303
V +PGIGK+++ I+EI+ TGKLSK + ++ + + ++ GIGP A+ L+ E
Sbjct: 53 VGKIPGIGKAIEAKIKEIIETGKLSKHQELLREIPPGVLEI-KKLPGIGPNRARILHREL 111
Query: 304 GHRTLDDL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 346
G LD+L K E + + + D + + R E++
Sbjct: 112 GVTGLDELAQAAKERRVRVLKGFSAKMEWEILNGIGMMRNRHDRVLLSVARELAEELTEF 171
Query: 347 LQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKL--KE 401
++ +LP V + GS RR K + GDLD+VI + ++ L+ + VK++ ++
Sbjct: 172 IK-----ILPGVRQVAVAGSTRRWKETVGDLDLVIAAEEAEALLNALATHPRVKEIIDRQ 226
Query: 402 MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGN 461
K LR V T++GL +DF+V P + + L TG+
Sbjct: 227 EKRLR----------------VYTWWGLA----------VDFQVVPPGEFLYCLHRSTGS 260
Query: 462 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
+RL+ +AE +G +L+ G+ GKQG + +TE+E++ LG ++
Sbjct: 261 KGHYQRLQEIAEEQGLQLNHHGM--------GKQG---EAPILLNTEEEIYSSLGMNYVA 309
Query: 522 PHER 525
P R
Sbjct: 310 PELR 313
>gi|448709366|ref|ZP_21701183.1| PHP domain protein [Halobiforma nitratireducens JCM 10879]
gi|445792296|gb|EMA42906.1| PHP domain protein [Halobiforma nitratireducens JCM 10879]
Length = 583
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 146/347 (42%), Gaps = 44/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES--AD----QVKGLPGIG 252
N I F + ++ A G + + +Y +A + P I AD ++G+ G+G
Sbjct: 4 NAEIAGRFEEFADLLEADGVEYKPRAYRRAAENVRSHPTPIADYVADGDREAIEGIEGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG + +LE + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGGIEELEELRAALPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIP-RHEVEQMERLLQ--KAGEEVLP-----EVII 360
+ Q + G K +I+ + EV Q L + ++VL E +
Sbjct: 123 EVAAEAGEIQEVTGFGPKTEQNIRDNLEFAREVGQRHLLGEGRPLADDVLAYLEDLETVE 182
Query: 361 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
C GS RR + + GD+DV+ S + + +V
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAA---TDSPEAVVEAFVDWGS------------------ 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
DS +++ G R R+D +V + + L +TG+ N RLR A +G +
Sbjct: 222 VDSEIES--GPAKASVRIGEIRVDLRVVAPEEFGSALQYFTGSKDHNVRLRNYAIDRGMK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ G F + ++G R + DTE+ +++ LG P + P R
Sbjct: 280 LNEYGAFDVSDLEDSQEGQRVGDRVAGDTEEGMYEALGLPAIPPELR 326
>gi|116619976|ref|YP_822132.1| phosphotransferase domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223138|gb|ABJ81847.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 581
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 144/351 (41%), Gaps = 60/351 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI-----ESADQVKGLPGIG 252
NK I + + ++ GED R SY +E P +I ++A +V +PGIG
Sbjct: 8 NKEIARVLWETADLMEIAGEDGFRIRSYRNGATAVEGYPERIVDILRDAARKVTDIPGIG 67
Query: 253 KSMQDHIQEIVTTGKLSK----LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RT 307
K + + EI G + L F T F ++ G+GP + ++E T
Sbjct: 68 KGLAQVLIEITERGSCERRDLLLAKFPP-----TALEFLKIQGLGPKSIALIFEHFRTST 122
Query: 308 LDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG--EEVLPEVI--- 359
+D+L+ E L R+G K + + I ++ LL A + L EV+
Sbjct: 123 IDELERLCQEQKLRDLPRMGAKLEEKVLRSIAQYRQRTGRYLLSYAEGMAQELAEVLGKT 182
Query: 360 -----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
+ GS RRG+ + GDLD+++ P + L +V + + L H
Sbjct: 183 PGVDRVTTAGSLRRGRETVGDLDLLVTGP---APTAALDVFVAYPRVEEVL-------GH 232
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
E + V GRE ++D + P + + + +TG+ N +R+ A
Sbjct: 233 GENKASAKV----------GRE-GLQVDVRTLPPESFGAAMQYFTGSKDHNVAIRMRAVK 281
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G +L++ GLF V + +TE+ ++ LG PW+ P R
Sbjct: 282 MGLKLNEYGLFR----------VEDEARVAGETEEGIYRALGLPWIPPELR 322
>gi|325294733|ref|YP_004281247.1| PHP domain-containing protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 574
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 68/301 (22%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 306
LPGIG+ +Q I E + TGK+ + E ++ SL ++ G+GP T + LYE G R
Sbjct: 56 LPGIGQKLQAKIIEFLKTGKIEEFEKLKQQVPDTIFSLL-DIPGVGPKTVKLLYETLGIR 114
Query: 307 TLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-- 361
+++DLK + L GLK + IK I LL+K G +L V +
Sbjct: 115 SVEDLKRAIEKGELLKLPGFGLKKVEKIKKGI---------ELLEKNGGRILLGVAVFIA 165
Query: 362 -----------------CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 404
GS RR K + GD+D++ + + + F++ + +KE+ +
Sbjct: 166 DRIINLLKEHSAVERISVAGSTRRMKETVGDIDILATGKNLEIIEAFVN--LPNIKEVLW 223
Query: 405 LREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVL 464
+GT E ++D +V + Y L +TG+
Sbjct: 224 ------------KGTKKATVIV---------EEGEQVDLRVTEPESYGAALQYFTGSKAH 262
Query: 465 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 524
N LR + +GY+L++ GLF GK TE+E++ LG P
Sbjct: 263 NIHLRTICLKQGYKLNEYGLFKEEEKIAGK------------TEEEIYKALGMETPPPEI 310
Query: 525 R 525
R
Sbjct: 311 R 311
>gi|20089612|ref|NP_615687.1| DNA-dependent DNA polymerase family X protein [Methanosarcina
acetivorans C2A]
gi|19914532|gb|AAM04167.1| DNA-directed DNA polymerase, family X [Methanosarcina acetivorans
C2A]
Length = 588
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 150/358 (41%), Gaps = 62/358 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 252
N+ I E+ + +I + + +Y +A IE L IE + KG +PGIG
Sbjct: 3 NREIAELLYETADIMEFQQIEWKPRAYRRAAQNIENLGEDIEKVYEKKGKKGLTEIPGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
+++ DHI E + TGK+ K E + T L E+ G+G ++L E +T+ DL
Sbjct: 63 EAIADHIAEYLETGKVKKFEDLKGKAPSGTTELM-EIRGLGAKKTKRLADELKVKTIPDL 121
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL---------- 355
K + +RL G ++I + +E L K EE++
Sbjct: 122 KAAVNAHRIRRLEGFGEISEENIARSLRNYEKSHSRMALGKVLPLAEEIISALKTTLKTE 181
Query: 356 -----PEV---IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 407
PE+ ++ GS RR K + GD+D++ + K + F+
Sbjct: 182 LGSKTPEIDFSKLIYTGSLRRLKETIGDIDILAEAEGEQVGKVMNA----------FVSL 231
Query: 408 DLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
+ S+ T S V GL +D +V P + Y L +TG+ N
Sbjct: 232 PAVGQVVSKGNTRSSVILKEGL----------EVDLRVVPPESYGAALQYFTGSKEHNIE 281
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
LR +A+ +GY+L + GL+ + GKQ + +E+EV+ LG ++ P R
Sbjct: 282 LRNIAQREGYKLSEYGLYEK---ASGKQ-------VAGKSEEEVYRKLGLEYIVPELR 329
>gi|452210459|ref|YP_007490573.1| DNA polymerase X family [Methanosarcina mazei Tuc01]
gi|452100361|gb|AGF97301.1| DNA polymerase X family [Methanosarcina mazei Tuc01]
Length = 584
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 148/354 (41%), Gaps = 58/354 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 252
N+ + E+ + +I + + +Y +A IE IE + KG + G+G
Sbjct: 3 NREVAELLYETADIMEFQQIEWKPRAYRRAAQNIENFGEDIEKVYEKKGKKGLTEISGVG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 311
+S+ DHI E + TGK+ K E + T L E+ G+G +KL +K +T+ DL
Sbjct: 63 ESIADHIAEYLKTGKVEKFEGLKGKAPSGTAELM-EIRGLGAKKMKKLADKLEIKTMLDL 121
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------ 359
KN +RL G+K ++I I +E L KA EE++ +
Sbjct: 122 KNAVKSHRIRRLSGFGVKSEENIARAIENYEKSHSRIPLGKALPLAEEIISGLKEELKNG 181
Query: 360 --------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
I+ GS RR K + GD+D++ + + K + +V + + +
Sbjct: 182 TPGLDLSRIIYTGSLRRLKETIGDIDILAEAEEADAGK-IMDAFVSLPEAGQVV------ 234
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
S+ T S V G ID +V P + Y L +TG+ N LR +
Sbjct: 235 ---SKGRTRSSVILKEGFA----------IDLRVVPPESYGAALQYFTGSKEHNIGLRNI 281
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A +GY+L + GL+ G + +E+E++ LG ++ P R
Sbjct: 282 ALREGYKLSEYGLYSKNSGE----------RIAGKSEEEIYRKLGLEYIAPELR 325
>gi|448337012|ref|ZP_21526097.1| PHP domain protein [Natrinema pallidum DSM 3751]
gi|445627007|gb|ELY80339.1| PHP domain protein [Natrinema pallidum DSM 3751]
Length = 583
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 44/348 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 252
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVETIDGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIDELEALRAELPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEVI 359
+ Q + G K +I + +LL +A ++VL PEV
Sbjct: 123 EAAAEAGEVQEVKGFGPKTERNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPEVD 182
Query: 360 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D ++ + ++V + +
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAATADGEA---VVERFV------------------AWDS 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
D +++ G R R+D +V + L +TG+ N LR A +G +
Sbjct: 222 VDDEIES--GPEKASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRGMK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L++ G F + + + R + +TE+ +++ LG PW+ P R
Sbjct: 280 LNEYGAFDVSAIADHEADQRIGDRVAGETEEGMYEALGLPWIPPELRT 327
>gi|292492014|ref|YP_003527453.1| PHP domain-containing protein [Nitrosococcus halophilus Nc4]
gi|291580609|gb|ADE15066.1| PHP domain protein [Nitrosococcus halophilus Nc4]
Length = 573
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 145/350 (41%), Gaps = 62/350 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N I EIF L ++ G + R +Y + + + ++ + LP IG
Sbjct: 5 NTEIAEIFNTLADLLEIEGANPFRVRAYRNGARTVGGFSQNIASLLKEGKDLTELPHIGS 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR-----TL 308
+ D I+ IV TG+L LE E+ RT ++ I P K HR +L
Sbjct: 65 DLADKIRTIVDTGRLPLLEEVEQ----RTPEALSKLMAI-PGLGAKRIAALHRELKVDSL 119
Query: 309 DDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP-----EVI- 359
+DLK + + L G K D IK I R + L +A V P E I
Sbjct: 120 EDLKRVIRMGKVRELEGFGKKTEDLIKAGIERIASSEKRFPLLQAESIVKPLLAYLETIA 179
Query: 360 ----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
I GSYRR K + GDLD+++ K + ++V + K L S
Sbjct: 180 GIKDIEVAGSYRRRKETVGDLDILVTC---KRGSPVMERFVTYEEIKKVL---------S 227
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
+ T + V G+ ++D +V P+ Y L +TG+ N +R + K
Sbjct: 228 QGETRATVLLRSGI----------QVDLRVVPQVSYGAALHYFTGSQAHNIAVRQIGVKK 277
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F G+Q V +TE+E+F+ +G P++EP R
Sbjct: 278 NLKINEYGVFK------GEQRVAG------ETEQEIFEQVGLPYIEPELR 315
>gi|448346157|ref|ZP_21535045.1| PHP domain protein [Natrinema altunense JCM 12890]
gi|445633167|gb|ELY86367.1| PHP domain protein [Natrinema altunense JCM 12890]
Length = 583
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 44/348 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 252
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVENIDGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG + +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGGIDELEALRAELPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEVI 359
+ Q + G K +I + +LL +A ++VL PEV
Sbjct: 123 EAAAEAGEVQEVTGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPEVD 182
Query: 360 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D ++ + ++V + +
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAATADGEA---VVERFV------------------AWDS 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
D +++ G R R+D +V + L +TG+ N LR A +G +
Sbjct: 222 VDDEIES--GPEKASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRGMK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
L++ G F + + + R + +TE+ +++ LG PW+ P R
Sbjct: 280 LNEYGAFDVSDIADHEADQRIGDRVAGETEEGMYEALGLPWIPPELRT 327
>gi|433639242|ref|YP_007285002.1| DNA polymerase IV (family X) [Halovivax ruber XH-70]
gi|433291046|gb|AGB16869.1| DNA polymerase IV (family X) [Halovivax ruber XH-70]
Length = 591
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 144/363 (39%), Gaps = 68/363 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 252
N + F + ++ A + + +Y +A I P I A D V + G+G
Sbjct: 4 NAELAARFEEFADLLEADDVEYKPRAYRRAAENILSHPVPIAEAVESGDEDAVDDIEGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG++ +LE + V I+ V G+GP T LY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIEELEDLRAELPV-DIADLTRVEGVGPKTVGTLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRLG----------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV--- 358
+ Q + L+ D +T RH V + L ++VL +
Sbjct: 123 EAAAEAGEIQDVKGFGAKTEQNILENIDFARTVGQRHLVGEARPL----ADDVLAYLEGI 178
Query: 359 --IILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
+ C GS RR + + GD+DV+ D + FL D I
Sbjct: 179 ADVERCEVAGSIRRWRETIGDVDVLAATDDPDAVVD------------DFLAWDSI---- 222
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
D +++ G R R+D ++ D + L +TG+ N RLR A
Sbjct: 223 -----DDEIES--GPAKASVRVGEVRVDLRLVVPDEFGSALQYFTGSKAHNVRLRNYAID 275
Query: 475 KGYRLDDTGLF------------PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
+G +L++ G F P G G + G R + +TE+ ++D LG PW+ P
Sbjct: 276 RGMKLNEYGAFDVSELESDPDADPQHVGGGQRVGER----VAGETEESMYDALGLPWIPP 331
Query: 523 HER 525
R
Sbjct: 332 ELR 334
>gi|339484269|ref|YP_004696055.1| PHP domain-containing protein [Nitrosomonas sp. Is79A3]
gi|338806414|gb|AEJ02656.1| PHP domain protein [Nitrosomonas sp. Is79A3]
Length = 577
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 147/354 (41%), Gaps = 62/354 (17%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPG 250
P N +I +F ++ ++ G + R +Y A V+ +++ +E + + LPG
Sbjct: 2 PKHNADIAAVFEEIADLLEIQGANPFRIRAYRNAARVVGEFSQEVSRLLEKGEDLTELPG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 309
IG + I+EIV +G S L+ E I+ ++ G+GP + LY + +TL+
Sbjct: 62 IGDDLAGKIKEIVGSGHCSLLDRLHT-ELPSAITELLKIPGLGPKRVKALYHDLDVQTLE 120
Query: 310 DL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 352
L K E+++ + + K I E +E+ L
Sbjct: 121 QLYRAARDGRIRALPGFGEKTENNILQAIEVHANQTRRFKLAIAAQYAEALEKFLV---- 176
Query: 353 EVLPEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
+P V+ + GSYRR + + GDLD++ + S+ V++ F D +
Sbjct: 177 -AIPGVLKVTVAGSYRRMRETVGDLDILATASTTAT-----SQVVQR-----FTNYDEVA 225
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
S T + V GL ++D +V + Y L +TG+ N +R +
Sbjct: 226 EILSAGPTRASVILKCGL----------QVDLRVVKEESYGAALHYFTGSKSHNIAIRRM 275
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A+ G ++++ G+F R +T + +TE V+ +G ++ P R
Sbjct: 276 AQKSGLKINEYGVF------------RDKTRIAGETEASVYAAVGLSYIPPELR 317
>gi|153004169|ref|YP_001378494.1| phosphotransferase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152027742|gb|ABS25510.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 589
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 140/321 (43%), Gaps = 48/321 (14%)
Query: 227 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 286
+A+ +E L ++ES ++ +PGIG+++ I E+ TG L+ L+ + L
Sbjct: 36 RAVEAVEDLAARVESG-RLTEVPGIGEALAKKIAELHRTGTLALLDRLRAKHPPGILELL 94
Query: 287 GEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYF-----DDIKTRIPRHEV 340
+V +GP L+ G T+ +L E + + G+K F + I + R
Sbjct: 95 -QVPDLGPRKIAALHAALGVGTVSEL--EAACRAGRVRGVKGFGAKTEERILDGLRRMRE 151
Query: 341 EQMER--LLQKA---GEEVL------PEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
ER LL A GE ++ P + + GS RRGK + DLDVV D
Sbjct: 152 RATERRVLLADALAVGEGIVAHLRGEPAALDVAVAGSTRRGKETVADLDVVAASRD---- 207
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPR 448
G LS ++ + L+ T + GT + V+ GL ++D +V P
Sbjct: 208 PGALS--------VRLVGHPLVARTLARGGTKTSVELASGL----------QVDLRVVPP 249
Query: 449 DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL--FPATYGSGGKQGVRARTSLKFD 506
+ + L +TG+ + +LR LA +G+ L + GL PA G + + + K
Sbjct: 250 EDFPTLLHHFTGSKAHHVKLRGLARERGFTLSEWGLHRLPAGVRDAGSEEIAPDPAAKVP 309
Query: 507 TEKE--VFDFLGFPWLEPHER 525
E E ++ LG P++ P R
Sbjct: 310 IESEAALYSALGLPFIPPELR 330
>gi|297172010|gb|ADI22994.1| DNA polymerase IV (family X) [uncultured Planctomycetales bacterium
HF0500_40D21]
gi|297183360|gb|ADI19495.1| DNA polymerase IV (family x) [uncultured Planctomycetales bacterium
HF0500_40D21]
Length = 583
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 54/300 (18%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 306
LPGIGK + + I IV TG+L++LE + +++ + G+GP L++ G
Sbjct: 58 LPGIGKDLAEKITSIVETGRLAQLEELREQVPAEVVAML-RIPGLGPKKVGVLFQDLGIE 116
Query: 307 TLDDLK---NEDSLTHSQRLGLKYFDDIKTRIP--RHE----------------VEQMER 345
+LD L+ +E + + G K I IP RH VE ++R
Sbjct: 117 SLDALEAAASEGVIAERKGFGAKTEQSILEGIPIARHGSTRTWLATARVAVDRIVEDLDR 176
Query: 346 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 405
L E + V + GS RR K + GDLDV+ + G S V L
Sbjct: 177 L------ESVTRVSL--AGSSRRLKETVGDLDVLATIAE-----GVESSEVMAALAEHEL 223
Query: 406 REDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN 465
E+++ +++ GL +D +V P + Y + +TG+ N
Sbjct: 224 VEEVLAQGETKQRVRLLEREAGGL----------EMDLRVVPEESYGAAMQYFTGSKEHN 273
Query: 466 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+R A+ +G ++++ G+FP + V R TE++V++ +G PW+ P R
Sbjct: 274 IVVRRRAQERGLKVNEYGVFPEN--DEDAKAVAGR------TEEDVYEAVGLPWIPPELR 325
>gi|156740035|ref|YP_001430164.1| phosphotransferase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156231363|gb|ABU56146.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
Length = 580
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 137/346 (39%), Gaps = 53/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKS 254
N +I E+F + ++ L EDR R +Y +A VI LP + + +++ +PG+GK+
Sbjct: 7 NHDIAEVFSAIADLMEILDEDRFRVQAYRRAGDVIRHLPAPLATYRARGELEQIPGVGKA 66
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK- 312
+ + I E++ TG+L + L V GIGP TA +LY E G +L +LK
Sbjct: 67 IAEKIGELLDTGELPYYNRLREKVPPGVRELL-RVPGIGPRTAGRLYRELGITSLAELKV 125
Query: 313 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA--GEEVLPEVIILC------ 362
L + G K D I I E ++ LL A E L +
Sbjct: 126 AAEAGRLAALKGFGAKTIDSILQGISAAERQERRMLLAHAIDSAEALINALRAAVPALSQ 185
Query: 363 ---GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
GS RRG+ + GDLD+ + V+ + +
Sbjct: 186 AAYAGSLRRGRPTVGDLDI-------LAAADDAPAVVRAFTMLPLVAR-----------V 227
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+S D + + G + D P ++ L +TG+ N R LA ++G
Sbjct: 228 ESAGDEKASILLHNGMQ----ADLIAVPPGMWGSALQHFTGSKAHNIHFRELALAQGLSF 283
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ G A T L TE+EV+ +G PW+ P R
Sbjct: 284 SEHGFRRADG-----------TLLTCATEEEVYAAIGLPWIPPELR 318
>gi|429192003|ref|YP_007177681.1| DNA polymerase IV [Natronobacterium gregoryi SP2]
gi|448324754|ref|ZP_21514166.1| PHP domain-containing protein [Natronobacterium gregoryi SP2]
gi|429136221|gb|AFZ73232.1| DNA polymerase IV (family X) [Natronobacterium gregoryi SP2]
gi|445617717|gb|ELY71310.1| PHP domain-containing protein [Natronobacterium gregoryi SP2]
Length = 583
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 142/347 (40%), Gaps = 44/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQ---VKGLPGIG 252
N I F + ++ A + + +Y +A + P I +AD ++G+ G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENVRSHPTPIADYVAADDREAIEGIEGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ I E V TG + +LE + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGAIEELEELRAALPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIP-RHEVEQMERLLQ--KAGEEVLP-----EVII 360
+ Q + G K +I+ + EV Q L + ++VL E +
Sbjct: 123 EAAAEAGEIQAVKGFGPKTEQNIRDNLEFAREVGQRHLLGEGRPLADDVLAYLEDLETVE 182
Query: 361 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
C GS RR + + GD+DV+ + + + +V +
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAA---TDAPEAVVEAFV--------------------DW 219
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G + G R R+D +V + + L +TG+ N RLR A +G +
Sbjct: 220 GSVGSEIESGPAKASVRIGEIRVDLRVVAPEEFGSALQYFTGSKDHNVRLRNYAIDQGMK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ G F + + G R + DTE +++ LG W+ P R
Sbjct: 280 LNEYGAFDVSDLEDAEDGQRVGDRVAGDTEAGMYEALGLSWMPPELR 326
>gi|307110951|gb|EFN59186.1| hypothetical protein CHLNCDRAFT_138090 [Chlorella variabilis]
Length = 433
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 228 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 287
A+ V+ +L + +ESA V+ L G+G + I+ TG ++ + + K++ + LF
Sbjct: 300 ALWVLGRLTYPLESACDVEQL-GLGPKTTAKLCSILRTGTCHQVLAAQLNSKLQELRLFM 358
Query: 288 EVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQME 344
V G+G TA+ + TL+D++ LT Q++GL++F D++ ++PR EV Q E
Sbjct: 359 SVMGVGEQTAKHWVAQNCYTLEDVRRRQQDLGLTQGQKVGLRHFGDMQHKVPRMEVAQAE 418
Query: 345 RLLQK 349
++Q+
Sbjct: 419 AIVQE 423
>gi|20067723|emb|CAD29102.1| chimeric DNA-directed DNA polymerase xf5-5c [synthetic construct]
Length = 202
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 28/209 (13%)
Query: 325 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASCGDLDVVIMH 382
L+ +D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+
Sbjct: 14 LRSREDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKMLNDVDLLIIV 73
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELR 438
P++K K L K +F+ + L G + G+C P E
Sbjct: 74 PEKKLLKHVLPNIRIK---GRFITDTL----------SKGETKFMGVCQLPSENDENEYP 120
Query: 439 H-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 497
H RID ++ P + + + +TG ++ +R+ A KG+ +++ + P G GV
Sbjct: 121 HRRIDIRLIPAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV 173
Query: 498 RARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A L D+E+++FD++ + + EP +R+
Sbjct: 174 -AGEPLPVDSEQDIFDYIQWRYREPKDRS 201
>gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
Length = 584
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 64/352 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 253
N ++ IF ++ + GE+ +Y +A VIE LP ++ + + +K LPGIG+
Sbjct: 7 NADMAGIFEQMADFLEIRGENPFKIRAYRRAAQVIEHLPREVATMLAEGEDLKALPGIGE 66
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 312
++ + E+V TG L E +D +S E+ GIGP TA +L E G ++D+L+
Sbjct: 67 AIASKMAELVRTGHLVAWETL-RDSLPEGLSTLLEIPGIGPKTAYRLATELGISSVDELE 125
Query: 313 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG--------EEVLPEVIIL 361
E + H RLG + +I H + M R Q+ EE+L + L
Sbjct: 126 QAILEGKVAHLFRLGDRTAQNIL-----HSIRSMRRKDQRIPLGQALPIVEEILSALRPL 180
Query: 362 CG-------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
G GS RR + + GD+D++ + ++ ++ + +RE L
Sbjct: 181 PGVRNLVPAGSLRRFRETLGDIDLMGTADNPEA-------VIRSFVSLPQVREVL----- 228
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
++ T + V GL + D ++ + + L +TG+ N LR +
Sbjct: 229 AQGPTKASVILSGGL----------QADLRMVEHEAFGSLLQYFTGSRQHNIALRTRMQK 278
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSL-KFDTEKEVFDFLGFPWLEPHER 525
KG +L + G+ A L KF TE+ ++ LG ++ P R
Sbjct: 279 KGLKLSEYGITDT-----------ATDRLEKFSTEEAFYERLGLQYIPPEIR 319
>gi|344201179|ref|YP_004785505.1| PHP domain-containing protein [Acidithiobacillus ferrivorans SS3]
gi|343776623|gb|AEM49179.1| PHP domain protein [Acidithiobacillus ferrivorans SS3]
Length = 576
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 139/356 (39%), Gaps = 68/356 (19%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLP----FKIESADQVKGL 248
P LN +I IF ++ ++ ED F +Y A +++ L +ES + + L
Sbjct: 2 PVLNPDIARIFDEIADLLEI--EDANPFRVRAYRNAARLVQGLSNDVKTMVESGEDLTEL 59
Query: 249 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY------- 301
PGIG + I EIVTTG S LE EK L +V G+GP + L+
Sbjct: 60 PGIGDDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHELDVET 118
Query: 302 ---------EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 350
EK R++ K E + + L I + R LQ
Sbjct: 119 VEQLARAAQEKRIRSIPGFGEKTEARIQKTLLAHLAAVPRFPIAIAAPYAAALVRYLQN- 177
Query: 351 GEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
+P V ++ GS+RRGK + GDLD++ + Y ED
Sbjct: 178 ----IPGVRRVVVAGSFRRGKDTVGDLDILATATADSPVMERFTAY-----------ED- 221
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+ S+ T + V L ++D + Y L +TG+ N +R
Sbjct: 222 VAEVLSQGTTRATVILRNKL----------QVDLRAVDESAYGAALHYFTGSKTHNIAIR 271
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ + G ++++ G+F R + + DTE+ V+ +G P++EP R
Sbjct: 272 RMGQDMGLKVNEYGIF------------RGKERIAGDTEESVYATVGLPYIEPELR 315
>gi|452944608|ref|YP_007500773.1| PHP domain protein [Hydrogenobaculum sp. HO]
gi|452883026|gb|AGG15730.1| PHP domain protein [Hydrogenobaculum sp. HO]
Length = 576
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 158/348 (45%), Gaps = 52/348 (14%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK------GLPGI 251
K+I ++F ++ LGE++ R +Y K ++ ++ I+S D++K + GI
Sbjct: 4 TKDIAKLFKEMALAAEFLGENKFRVLAYQKVADILFEIDKDIKSVDELKEYLSSNQIHGI 63
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRT 307
G+S + I+E + TG++ K + F + + + + GIGP T + LY+ K
Sbjct: 64 GESSLEKIEEYLKTGRIKKHDEFLQKVPKELLDIM-DAPGIGPKTLKTLYDVFGIKNKEE 122
Query: 308 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEV 358
L ++ + + G K ++IK I E + + +A +++L E+
Sbjct: 123 LLKALDDPRIKTIKGFGPKKIENIKRGIALFEQSKERMFITEAYSLAQDILNYMKGCKEI 182
Query: 359 I-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
I I GS RR K + GD+D+++ +K + +Y K K++ E+
Sbjct: 183 INISVAGSLRRMKETIGDIDILV--SAKKEDFPKIHEYFKAYKDI-------------EQ 227
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
SG +T + ++ +D +V + + GL +TG+ N R+R +A+ KGY
Sbjct: 228 VIGSG-ETKTSILLKNSKQ----VDLRVLKEEEWGSGLQYFTGSKEHNVRIRDIAKEKGY 282
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ + G+F + G L + E+++++ LG P R
Sbjct: 283 KISEYGIFEISSGK----------RLGGEKEEDIYNILGMVMPPPEIR 320
>gi|448736635|ref|ZP_21718730.1| DNA polymerase (family X) [Halococcus thailandensis JCM 13552]
gi|445805938|gb|EMA56125.1| DNA polymerase (family X) [Halococcus thailandensis JCM 13552]
Length = 575
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 147/346 (42%), Gaps = 44/346 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 255
N+ I + F ++ + + + +Y A IE L IE ++++ + GIG+S+
Sbjct: 3 NQEIAKTFYEIADFLEIKEVEYKPRAYRTAAENIESLSTDIEDIHDRNELEEIEGIGESI 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN- 313
+ + E + TG L+ E + D + I V G+GP TA+KLY E TL+DL++
Sbjct: 63 AEKVAEYLDTGYLAYYEDLKADLPI-DIEAITSVKGVGPKTAKKLYLELDVLTLEDLEHA 121
Query: 314 --EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA------------GEEVLPEVI 359
++ + G +I RI + Q LL +A + V
Sbjct: 122 AENGAIAELEGFGKASQQNILDRIEWAKRSQERMLLGRAFPIARSIETRLQNSDAFDRVD 181
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
I+ GS+RR + + GDLD+ + ++ +F D + + T
Sbjct: 182 IV--GSFRRRRPTVGDLDI------------LATASAPEVAMEEFCTHDNVKEVLARGNT 227
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
S V GL +ID ++ Y LI +TG+ N LR A G++L
Sbjct: 228 KSSVIVSGGL----------QIDLRIVDDSEYGAALIYFTGSKDHNITLRNRAIDHGWKL 277
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ GLF + + G R + +TE +++D L W++P R
Sbjct: 278 NEYGLFDVSDVDDVRGGQRVGKRIASETEPDIYDTLNTTWIQPELR 323
>gi|336476630|ref|YP_004615771.1| PHP domain-containing protein [Methanosalsum zhilinae DSM 4017]
gi|335930011|gb|AEH60552.1| PHP domain protein [Methanosalsum zhilinae DSM 4017]
Length = 573
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 59/322 (18%)
Query: 224 SYYKAIPVIEKLP------FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
+Y KA IE L ++ E + +K + GIG ++ HI E + TGK+ K E +K
Sbjct: 28 AYRKAARGIENLTEDISDIYEREGTEGLKSITGIGSNICTHIVEYLKTGKIEKFEKLKK- 86
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 337
+ + S E+ G+GP T +KL+++ L +K D++ I +
Sbjct: 87 QSMSGASELIEIEGLGPKTIRKLHDE-------------------LDIKSISDLRDAILK 127
Query: 338 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD------RKSHKGF 391
H+++++E + +K E+ L E I S+ R + +DV I + ++ +K
Sbjct: 128 HKIQELEGMGEKT-EQNLLEAIRNFEKSHERMQ-----IDVAIETAEDVISYLKEQNKPD 181
Query: 392 LSKYVKKLKEMKFLRED---LIFSTHSEEGTDSGVDTY-FGLCTYPGRE-----LRH--R 440
+ Y L+ MK D L + +SEE +S V+ GR L++
Sbjct: 182 IINYAGSLRRMKETIGDIDVLAVTDNSEELIESFVNMEDIERIVSKGRTRSTVVLKNGVS 241
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
+D +V + Y + +TG+ N LR +A KGY+L + GLF G + + R
Sbjct: 242 VDIRVIKNESYGSAMQYFTGSKQHNIELRNIALEKGYKLSEYGLFEKESG----KKIEGR 297
Query: 501 TSLKFDTEKEVFDFLGFPWLEP 522
+E+ ++ LG ++ P
Sbjct: 298 ------SEERIYGTLGLAFIPP 313
>gi|289549356|ref|YP_003474344.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
gi|289182973|gb|ADC90217.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
Length = 574
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 154/353 (43%), Gaps = 64/353 (18%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 254
NK I IF ++ +I LG++ R +Y + ++ +L +E ++ +PGIG S
Sbjct: 4 NKEIARIFERMADILEFLGDNPYRINTYRRVANILSELGTDVEELVKTGKIYHIPGIGPS 63
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 311
+ I E + TGK+SK E ++ + L +V GIGP T + Y+K G R+ DD
Sbjct: 64 SVEKILEYLRTGKISKYEELKEKVPEDLLELL-DVPGIGPKTLKLAYDKLGIRSKDDFVR 122
Query: 312 ------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPE 357
E L + R GL+ ++ K R+ E Q+ + LL E L
Sbjct: 123 AVRSGVLASLPGMGEKKLQNIMR-GLELYERAKERMSLIEAYQLGEDILLHMQKIEDLYT 181
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDR---KSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
I L GS RR K + GD+D+++ P K H F++ + +KE+
Sbjct: 182 NIELA-GSLRRRKETVGDIDLLVAAPKEVWSKIHNHFVT--FQGVKEI------------ 226
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
G +T + GR+ +D + + L +TG+ N R+R +A++
Sbjct: 227 ----LGKG-ETKSSILLENGRQ----VDMRTVEPHQWGSALQYFTGSKEHNVRVRDIAKA 277
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 525
+G +L + G+F RA T L TE+EV+ +G P R
Sbjct: 278 RGLKLSEYGVF------------RADTEEWLGGRTEEEVYSLVGMQTPPPEIR 318
>gi|374983694|ref|YP_004959189.1| PHP domain-containing protein [Streptomyces bingchenggensis BCW-1]
gi|297154346|gb|ADI04058.1| PHP domain protein [Streptomyces bingchenggensis BCW-1]
Length = 580
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 141/335 (42%), Gaps = 69/335 (20%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
G+ ++ +Y KA I P + D ++ +PG+GKS+ D + E + TG + ++
Sbjct: 24 GDAFKARAYEKAARAIGGHPRDVSELDAKGLREIPGVGKSIADKVVEYLRTGSVPAVDEV 83
Query: 275 EKD--EKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRLGLKYFDDI 331
VR ++ + +GP A LYE+ H ++D L + H +L D+
Sbjct: 84 RAAIPAGVRQLT---AIPALGPKKAMLLYEELHIASVDQLSDA---IHDHKL-----RDL 132
Query: 332 KTRIPRHEVEQME--RLLQKAGEEVLPEVII-----------------LC--GGSYRRGK 370
K P+ E + L+Q AG+ V V + C GS RR K
Sbjct: 133 KGFGPKTEENILHGISLMQAAGDRVPLNVAMSVADDIVAELSRVTGCEACEYAGSLRRMK 192
Query: 371 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
+ GD+D+++ + +++ + + E + E+ T + T GL
Sbjct: 193 ETVGDIDILVAADES-------IPFMEAFTRLPYTAEVI---ARGEKKT--SIRTTKGL- 239
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
++D +V P D + GL+ +TG+ N R+R +A G +L + GLF A G
Sbjct: 240 ---------QVDLRVLPLDSWGAGLLYFTGSKAHNIRVRAIAMRHGLKLSEYGLFDAKSG 290
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ +E++V+ LG W+ P R
Sbjct: 291 E----------RIASRSEEDVYARLGMDWIPPTLR 315
>gi|195953813|ref|YP_002122103.1| PHP domain-containing protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933425|gb|ACG58125.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 576
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 149/314 (47%), Gaps = 44/314 (14%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK------GLPGI 251
K+I ++F ++ LGE++ R +Y K ++ ++ I+S D++K + GI
Sbjct: 4 TKDIAKLFKEMALAAEFLGENKFRVLAYQKVADILFEIDKDIKSVDELKEYLTTNQIHGI 63
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYE----KGHR 306
G+S + I+E + TG++ K H+E +KV + + + GIGP T + LY+ K
Sbjct: 64 GESSLEKIEEYLKTGRIKK--HYEFLQKVPKELLDIMDAPGIGPKTLKTLYDVFGIKNKE 121
Query: 307 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP------E 357
L ++ + + G K ++IK I E + + +A +++L E
Sbjct: 122 ELLKALDDPRIKTIKGFGPKKIENIKRGIALFEQSKERMFITEAYSLAQDILSYMKGCKE 181
Query: 358 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
+I I GS RR K + GD+D+++ +K + +Y K K+M E
Sbjct: 182 IINISVAGSLRRMKETIGDIDILV--STKKEDFPKVHEYFKAYKDM-------------E 226
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
+ SG +T + ++ +D +V + + GL +TG+ N ++R +A+ KG
Sbjct: 227 QVIGSG-ETKTSILLKNSKQ----VDLRVLKEEEWGSGLQYFTGSKEHNIKIRDIAKEKG 281
Query: 477 YRLDDTGLFPATYG 490
Y++ + G+F + G
Sbjct: 282 YKISEYGIFEISSG 295
>gi|113913509|gb|ABI48898.1| POL4 [Saccharomyces cariocanus]
Length = 582
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 27/200 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIGKSMQD 257
N+ + +L Y GE R+ SY A +E F I S ++ L IG S+
Sbjct: 188 NELVIAALKRLTKKYEIKGEKFRARSYRLAKQSLENCDFNISSGEEAHIKLRNIGPSIAR 247
Query: 258 HIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 316
IQ I+ TG L L + ++K++ F +GIGP A++ +L N +S
Sbjct: 248 KIQVILDTGVLPGLNDSMGLEDKLK---YFKNCYGIGPEIAKRW---------NLLNFES 295
Query: 317 LTHSQR-------------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 363
+ + G Y+DD ++ R+E +Q A E+ PE +
Sbjct: 296 FCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECFAHLEKVQNALSEIDPECQVELQ 355
Query: 364 GSYRRGKASCGDLDVVIMHP 383
GSY RG + CGD+D++ P
Sbjct: 356 GSYNRGYSKCGDIDLLFFKP 375
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 396 VKKLKEMKFLRED---LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYA 452
+KKL+E+K + D L+ EE +D Y L + G R R+DF D
Sbjct: 453 LKKLEELKEMENDEGTLLIEEEEEETKLKPIDQYMSLNSKDGNYCR-RLDFFCCKWDELG 511
Query: 453 FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVF 512
G I +TG+ NR +R+LA KG++L GLF R T L+ E+++F
Sbjct: 512 AGRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNTLLESFNERKIF 559
Query: 513 DFLGFPWLEPHERN 526
+ L ++EP RN
Sbjct: 560 ELLNLKYVEPKHRN 573
>gi|302539938|ref|ZP_07292280.1| cell division topological specificity factor MinE [Streptomyces
hygroscopicus ATCC 53653]
gi|302457556|gb|EFL20649.1| cell division topological specificity factor MinE [Streptomyces
himastatinicus ATCC 53653]
Length = 581
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 140/333 (42%), Gaps = 65/333 (19%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEH 273
G+ R+ +Y KA I P + D VKGL P +GKS+ + + E + TG + +E
Sbjct: 24 GDAFRARAYEKAARSIGGHPTDVSGLD-VKGLREIPNVGKSIAEKVVEYLRTGHVPAVEQ 82
Query: 274 FEKD--EKVRTISLFGEVWGIGPATAQKLYEK--------------GHRTLDDLK----- 312
VR ++ + +GP A LYE+ HR L DLK
Sbjct: 83 ARSKIPAGVRELT---AIPALGPKKAMLLYEELDIASVEQLATAIEEHR-LRDLKGFGPK 138
Query: 313 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 372
+E+++ H G+ R+P + + + A V + GS RR + +
Sbjct: 139 SEENILH----GIGLLRAAGGRVPLDDAMDVADDIVAALSRVPGCERVAYAGSLRRMRET 194
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
GD+D+++ + + ++ + + E + H E+ T + T GL
Sbjct: 195 VGDVDILVAAAESAA-------FMDAFTALPYTAEII---AHGEKKTS--IRTTKGL--- 239
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
++D +V P D + GL+ +TG+ N R+R +A G +L + GLF SG
Sbjct: 240 -------QVDLRVLPLDSWGAGLLYFTGSKAHNIRVRAIAVRHGLKLSEYGLFETK--SG 290
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
K R +E++V+ LG W+ P R
Sbjct: 291 KKIASR--------SEEDVYARLGMDWIPPTMR 315
>gi|9964524|ref|NP_064992.1| putative DNA polymerase beta/AP endonuclease [Amsacta moorei
entomopoxvirus 'L']
gi|9944733|gb|AAG02916.1|AF250284_210 AMV210 [Amsacta moorei entomopoxvirus 'L']
Length = 612
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 153/350 (43%), Gaps = 62/350 (17%)
Query: 202 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI-------------ESADQV--- 245
I + K +IY L E + ++ A VI+ P I ES + +
Sbjct: 301 ILLVLNKFADIYNILNEIKYK-AFLNAAYVIQNTPVIIFKYKNVNNKFILNESKENIIQK 359
Query: 246 -KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 304
K L IG S+ D I E+++T K+ KL + E + + I + + IGP AQ L +
Sbjct: 360 YKNLKSIGTSISDIIYELLSTNKVEKLINLENNSSYKYIKILTSILFIGPKKAQSLLKLN 419
Query: 305 HRTLDDL-------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 357
+ ++DL N LT + ++Y D++ + R+ + +++ + + E E
Sbjct: 420 IKNINDLIEKKDNIINMGILTIHEIKIIEYIKDMEP-VSRNFINDLKQNINLSSE---CE 475
Query: 358 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 417
IL GSY RG D+D++I+ D K FL + K K M +R+
Sbjct: 476 WYIL--GSYARGLDYSKDIDILII--DFTIDK-FLEELKKIAKLMYIIRK---------- 520
Query: 418 GTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 477
G + + G+ + G++ I+ KV ++ Y ++ +TG+ N +R +A+S+
Sbjct: 521 ----GNNIFSGVFLWQGKKFILEIN-KVNNKEKYT-AIMHFTGSKKFNIFMRNIAKSENM 574
Query: 478 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
L+ L + L E+++FD+L ++ ++RN+
Sbjct: 575 ILNQYSL------------KKDNVELPITKEEDIFDYLKIKYIPNNKRNI 612
>gi|20067741|emb|CAD29111.1| chimeric DNA-directed DNA polymerase xf4-5m [synthetic construct]
Length = 197
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKASCGDLDVVIMHPDR 385
+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+ P++
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKMLNDVDLLIIVPEK 76
Query: 386 KSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH 439
K K L ++K + F R+ ++F E +D + L
Sbjct: 77 KLLKHVLPNI--RIKGLSFSVKVCGERKCVLFIEW--EKKTYQLDLFMALAE-------- 124
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG---YRLDDTGLFPATYGSGGKQG 496
P+D Y G++ +TG+D+ N+ +R A KG Y+L+ GLF
Sbjct: 125 -------PKDQYYCGVLYFTGSDIFNKNIRAHALEKGFTNYKLNQYGLFKN--------- 168
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ LK TEKE+ LGF + P +R
Sbjct: 169 -QTLVPLKITTEKELIKELGFTYRIPKKR 196
>gi|255514119|gb|EET90382.1| PHP domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 580
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 149/354 (42%), Gaps = 65/354 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFS------YYKAIPVIEKLP------FKIESADQVK 246
NK I +IF NI LG D S Y +A IE L + D +
Sbjct: 5 NKEIADIFN---NIAAMLGIDNSPSSKFEIRAYQRAALTIEGLQEDLGLIYGRGGIDALM 61
Query: 247 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH 305
LPGIGK + I+E + TG++ K E K + + L ++ G+G LY++ G
Sbjct: 62 ELPGIGKGLAQKIEEYLKTGRIRKYEEMRKKYPIDFVEL-SKIEGLGAKKIGVLYKRLGV 120
Query: 306 RTLDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEV-EQMERLLQKAG 351
+ ++ LK+ + L G+K + K R+ +V + E ++ K
Sbjct: 121 KDVETLKDALEKHKVRELAGFGAKSEEVLADGIKILESSKGRLLLGDVLPEAESIVSKLA 180
Query: 352 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411
L E +++ GS RR + + GD+D++ LSK +K+ + F D +
Sbjct: 181 GSGLAEGVVIA-GSIRRMRETVGDIDILA-----------LSKSPEKVMDF-FSGMDEVK 227
Query: 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL 471
S S+ T + V G D +V D + + +TG+ N +R +
Sbjct: 228 SIISKGPTKTTVWLKIGTSC----------DLRVIEPDSFGAAIQYFTGSKNHNIGVRTI 277
Query: 472 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A KGY+L++ GLF K G R +SL E+ ++ LG W+ P R
Sbjct: 278 AVKKGYKLNEYGLFE-------KSG-RLISSL---NEETIYAKLGMQWIPPEMR 320
>gi|392375791|ref|YP_003207624.1| phP C-terminal domain-containing protein, partial [Candidatus
Methylomirabilis oxyfera]
gi|258593484|emb|CBE69823.1| PHP C-terminal domain protein [Candidatus Methylomirabilis oxyfera]
Length = 577
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 150/353 (42%), Gaps = 67/353 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIESADQVKGLP---GIG 252
N +I ++F ++ ++ +D F +Y +A +E L +IE+ GL GIG
Sbjct: 3 NLDIAKLFHEIADLLEI--QDENIFKIRAYRRAAMNLESLTEEIEAVAARGGLAEIAGIG 60
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
K + IQ+ + TG++ LE + L + G+GP T + L+++ +D ++
Sbjct: 61 KDLAAKIQQAIETGRIEYLEELRTAIPRGVVELMA-IPGVGPKTTKLLFQQLQ--VDSVE 117
Query: 313 NEDSLT-HSQRLGL-----KYFDDI--KTRIPRHEVEQME--RLLQKAGE-----EVLPE 357
++L + LGL K D+I ++ + E+M R L A E E LPE
Sbjct: 118 RLETLALQGKLLGLPGIKQKTVDNILKGIQVVKTGRERMPLGRALPLALELVRILETLPE 177
Query: 358 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
V I GS RR + + DLD L+ K M +F++ +
Sbjct: 178 VTQISLAGSLRRMRETVKDLD-------------LLATSTKPATVMA------VFTSLPQ 218
Query: 417 EGTDSGVDTYFGLCTYPGRELRHR----IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
L +RHR +D +V D + L +TG+ N R+R LA
Sbjct: 219 VAE-------VLLQGETKATIRHRDGIQVDLRVVEPDCFGAALQYFTGSKAHNIRVRELA 271
Query: 473 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG ++ + G+F G T + TE+EV++ +G P++ P R
Sbjct: 272 VRKGLKVSEYGVFKEATG----------TRIAGATEEEVYETIGLPYIPPELR 314
>gi|390367710|ref|XP_783476.3| PREDICTED: DNA polymerase lambda-like [Strongylocentrotus
purpuratus]
Length = 101
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 427 FGLCTYPGRELRHR-IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 485
G+C PG +++HR ID V P Y L+ +TG+ NR +R LA+ KG L + L
Sbjct: 1 MGVCKLPGDDMKHRRIDIIVAPYSEYPCALVHFTGSGHFNRSMRALAKKKGMSLSEHALR 60
Query: 486 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
G++ + T L EK++FD LG + E HER+
Sbjct: 61 TGVV-RRGQEKIHEGTPLPVHCEKDIFDHLGLEYRESHERD 100
>gi|225873244|ref|YP_002754703.1| PHP domain-containing protein [Acidobacterium capsulatum ATCC
51196]
gi|225793638|gb|ACO33728.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
Length = 580
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 129/330 (39%), Gaps = 52/330 (15%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 272
G+ R SY +A +E + + A +++ +PGIGK M +I +I TG
Sbjct: 22 GDSFRIRSYRRAAEAVEATTVTLATIAGDAKKLQEIPGIGKGMAANIAQIEETGSFDLRR 81
Query: 273 HFEKDEKVRTISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNEDSLTHSQRLGLKYF 328
+ + L ++ G+GP T L+ TL+ L R G K
Sbjct: 82 ELLEKYNASILELL-KLPGMGPKTVALLFSALKVDSIETLEAALKAGKLNGLPRFGKKLI 140
Query: 329 DDIKTRIP---RHEVEQMERLLQKAGEEVLPEVIILCG-------GSYRRGKASCGDLDV 378
D+IK I +H + + Q+A +E+ + L G GS RRG+ + GDLD+
Sbjct: 141 DNIKKGIEEYRQHHGRFLVSVSQRAADEIAEYLRKLEGIETVTPAGSTRRGRETAGDLDL 200
Query: 379 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 438
++ P ED+ + G+D+
Sbjct: 201 LVTGP--------------------ACAEDVCAEAVEYTASYPGIDSMIARGQNKVSFKL 240
Query: 439 H---RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
H ++D ++ P + Y L +TG+ + N LR A +GY L + L GS
Sbjct: 241 HNGLQVDVRLLPEESYGAALQYFTGSKMHNVTLRQRALRRGYTLSEYALANVADGS---- 296
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
V AR TE+E++ L W+ P R
Sbjct: 297 VVAAR------TEEEIYAALDLDWIPPELR 320
>gi|448348385|ref|ZP_21537234.1| PHP domain-containing protein [Natrialba taiwanensis DSM 12281]
gi|445642752|gb|ELY95814.1| PHP domain-containing protein [Natrialba taiwanensis DSM 12281]
Length = 593
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 137/309 (44%), Gaps = 52/309 (16%)
Query: 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 301
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQAELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 302 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 355
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQEVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 356 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
+ + C GS RR + + GD+DV++ D ++ + ++V
Sbjct: 173 GFLEGIQEVERCEVAGSIRRWRETIGDVDVLVGTNDNEA---VIEQFVGW---------- 219
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+ DS +++ + E+ R+D +V D + L +TG+ N L
Sbjct: 220 --------DSVDSEIESGPAKASVLVGEI--RVDLRVVVPDEFGAALQYFTGSKDHNVSL 269
Query: 469 RLLAESKGYRLDDTGLF--------PATYGSG----GKQGVRARTSLKFDTEKEVFDFLG 516
R A +G ++++ G+F P GSG G Q + R L +TE+ +++ LG
Sbjct: 270 RNYAIDRGLKVNEYGVFDVSEIDAGPDGDGSGSATDGSQRIGDR--LAGETEEGMYEALG 327
Query: 517 FPWLEPHER 525
W+ P R
Sbjct: 328 LDWMPPELR 336
>gi|13879400|gb|AAH06681.1| Polb protein [Mus musculus]
Length = 111
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 198 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 256
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 257 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 293
+ I E + TGKL KLE +D+ +I+ V GIG
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIG 107
>gi|421470204|ref|ZP_15918604.1| PHP domain protein [Burkholderia multivorans ATCC BAA-247]
gi|400228302|gb|EJO58244.1| PHP domain protein [Burkholderia multivorans ATCC BAA-247]
Length = 587
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 134/349 (38%), Gaps = 59/349 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N +F ++ ++ G + R +Y A I +P + Q+ +P IG
Sbjct: 5 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPSMLADGGQLVRIPSIGP 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 65 DLASKLREIAQTGTCDLQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 123
Query: 313 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 357
E H + L L D+ R PR + LL++ LP
Sbjct: 124 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPAATGVLAPLLERL--RALPG 181
Query: 358 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
VI + GS RR + + GDLD+++ S F R D + ++
Sbjct: 182 VIEAVAAGSVRRRRETVGDLDILV------------SARDAAAVADAFTRGDAVERVLAK 229
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T S + GL ++D +V D + L+ +TG+ N LR +A++ G
Sbjct: 230 GKTRSSIVLACGL----------QVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAAG 279
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F R + TE V+D +G W+ P R
Sbjct: 280 LKINEYGVF------------RGEERIAGATEASVYDAIGLQWVPPELR 316
>gi|384249488|gb|EIE22969.1| Nucleotidyltransferase [Coccomyxa subellipsoidea C-169]
Length = 549
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 149/398 (37%), Gaps = 105/398 (26%)
Query: 219 DRRSFSYYKAIPVIEKLPFKIESA----DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
+ +S + +A + FKIE D LP +G + I EI TG +LE
Sbjct: 165 NHKSLGFARAASAVRACAFKIEPGTRPEDLKNQLPFVGGARAVQICEIAATGTTLELEQH 224
Query: 275 EKDEKVRTIS-------------------LFGEVWGIGPATAQKLYEKGHRTLDDLKNE- 314
+V + F ++ G+G ATA++ Y+ G RTLDD+
Sbjct: 225 RAGVQVYSSPDANGQRKMYEHAVGSVARRQFKKLPGVGSATAKRWYDLGLRTLDDVAEAA 284
Query: 315 -----------DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIIL 361
LT +Q + + D+ +V++M R + A V V+ +
Sbjct: 285 KPGGPLAIGGVAPLTVAQAFSVAHRGDLLETCTEDDVDEMRREVLDALTTVAGNGWVLQI 344
Query: 362 CGGSYRRGKASCGDLDVVIMHPDR---------------------KSHKGFLSKYVKKLK 400
GG+ RG AS D D V+ + + KS L++ +
Sbjct: 345 VGGAA-RGLAS-HDADFVVSNKETSTEGIGNLLYDELCARGRLFPKSEAMCLTQSSRMPT 402
Query: 401 EMKFLREDL-------IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAF 453
++ +RE++ F+ H+ D FG ++R R+D + P A
Sbjct: 403 HLQSMREEVSRKQTASFFTLHNLSADRH--DHIFGNYLTEAGKVR-RLDVIIAPPQERAA 459
Query: 454 GLIAWTGNDVLNRRLRLLAESKGYRL-------------------------DDTGLFPAT 488
++ WTG+ R LR A +G L D T +P
Sbjct: 460 CILGWTGSRQYLRFLRQYAADRGMHLNSHRIMRRVGNTAIVVPDEGPPLDRDGTPRWPPG 519
Query: 489 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+GSG RT +TE ++F+ LG P+ PHERN
Sbjct: 520 WGSG-------RT---VETEADIFELLGLPYRPPHERN 547
>gi|82702030|ref|YP_411596.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
gi|82410095|gb|ABB74204.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
Length = 598
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 148/351 (42%), Gaps = 58/351 (16%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFK----IESADQVKGLPG 250
P N +I +F ++ N+ G + R +Y A+ I L + +E+ + + LPG
Sbjct: 2 PSHNADIAAVFEEIANLLEIEGANPFRIRAYRNAVQAIGALSTEAYVLLENKEDLTELPG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 309
IG+ + I+EI+ TG + L+ + + L +V G+GP + LY + +T++
Sbjct: 62 IGRDLAGKIEEIIATGHCALLDRLQTELPPAVTELL-KVPGLGPKRVRHLYHDLDVQTVE 120
Query: 310 DL---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP---------- 356
L E + G K +I I H ++ L A + P
Sbjct: 121 QLYGAAREGRIRALSGFGEKTELNILQAIEAHTDQKGRFKLAVAAQYAEPLRAFLADVPG 180
Query: 357 --EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
E I+ GSYRR + + GDLD+V+ + G S +++ + + E L +
Sbjct: 181 VKEAIV--AGSYRRMRETVGDLDIVVT-----AASG--SPVMERFTGYEEVAEILAAGS- 230
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
T + V GL ++D +V + Y L +TG+ N +R +A+
Sbjct: 231 ----TRASVVLKCGL----------QVDLRVVADESYGAALHYFTGSKAHNVAVRYIAQK 276
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
KG ++++ G+F R + + +TE+ V+ G ++ P R
Sbjct: 277 KGLKVNEYGVF------------RGKNRIAGETEESVYRAAGLSFIPPELR 315
>gi|448358656|ref|ZP_21547333.1| DNA-directed DNA polymerase [Natrialba chahannaoensis JCM 10990]
gi|445645238|gb|ELY98244.1| DNA-directed DNA polymerase [Natrialba chahannaoensis JCM 10990]
Length = 583
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 153/353 (43%), Gaps = 56/353 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG--------LPG 250
N + F + ++ A + + +Y +A I P I DQV + G
Sbjct: 4 NAELAGRFEEFADLLEADDVEYKPRAYRRAAENIRAYPVPI--GDQVADGNEEILDEIDG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 309
+G ++ I E V TG++ +LE + + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISAKIVEYVETGEIEELEELKAELPI-DIADITRIEGVGPKTAGKLYRELGIETLD 120
Query: 310 DLKNEDSLTHSQRLGLKYF-----DDIKTRIP-RHEVEQMERLLQKAGEEVLPEVIIL-- 361
+L ED+ S+ G+K F ++I+ I EV Q R L G + +V+
Sbjct: 121 EL--EDAAEASEIQGVKGFGPKTEENIRDNIEFAREVGQ--RQLLGEGRPLADDVLAFLE 176
Query: 362 ---------CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 412
GS RR + + GD+DV++ + ++ + ++V
Sbjct: 177 SLEGVERCEVAGSIRRWRETIGDVDVLVATNENET---VIEQFVGW-------------- 219
Query: 413 THSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
DS +++ G R R+D +V D + L +TG+ N RLR A
Sbjct: 220 ----NSVDSEIES--GPAKASVRIGESRVDLRVVVPDEFGSALQYFTGSKDHNVRLRNYA 273
Query: 473 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+G ++++ G+F + G +G R + +TE +++ LG PW+ P R
Sbjct: 274 IDRGLKVNEYGVFDVSDLDEGDEGQRVGERIAGETEDGMYNALGLPWIPPELR 326
>gi|257053513|ref|YP_003131346.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
gi|256692276|gb|ACV12613.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
Length = 580
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 133/321 (41%), Gaps = 43/321 (13%)
Query: 224 SYYKAIPVIEKLPFKI-----ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 278
+Y +A + + P + + + V+ + +G+++ D + E V TG + +LE +
Sbjct: 29 AYRRAAENVAEYPGDVVDLAEDGVEAVQEIDRVGEAIADKLVEYVETGAIEELEDLRAEL 88
Query: 279 KVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTR 334
V +L V G+GP T LYE G +TLDDL+ Q + G K +I
Sbjct: 89 PVEMDALTS-VEGVGPKTVGTLYEALGIQTLDDLEAAAEAGEIQNVSGFGAKTEQNILDG 147
Query: 335 IPRHEVEQMERLLQKA---GEEV-----LPEVIILC--GGSYRRGKASCGDLDVVIMHPD 384
I +LL +A GE V E + C GGS RR K + GD+D ++ +
Sbjct: 148 IDFAREAHERQLLGEARPRGERVREYLRAVEAVQQCELGGSLRRWKPTIGDVDALVASTE 207
Query: 385 RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFK 444
+ + + +G D ++ G + R RID +
Sbjct: 208 GPAVVEAFTDW---------------------DGADRVIEAGEGKASL--RADGVRIDLR 244
Query: 445 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 504
V + L +TG+ N LR A + +L++ G+F + G RA +
Sbjct: 245 VVDPAEFGAALQYFTGSKDHNVDLRNRAIDRDLKLNEYGVFDISAVEGEVDDQRAGERVA 304
Query: 505 FDTEKEVFDFLGFPWLEPHER 525
++E EV++ L PW+ P R
Sbjct: 305 GESEAEVYEALDLPWIPPELR 325
>gi|220931411|ref|YP_002508319.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
gi|219992721|gb|ACL69324.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
Length = 573
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 160/345 (46%), Gaps = 53/345 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 254
NK ++ I +L + GE++ + +YY A + + I+ +++ +PG+G+
Sbjct: 6 NKEVSRILKELAKLMELKGENKFKVRAYYNASRQLINMSDNIQDLAREGKIRNIPGVGEG 65
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 313
+ I+EI+ G +LE + + + + ++ G+GP A +L+ E G L++LK+
Sbjct: 66 IARSIKEIMEKGYSPELEELKAELPGGLLEII-KIPGLGPKRAYQLFNELGVTNLEELKS 124
Query: 314 EDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGE--EVLPEVIILC------ 362
+ +++L G+K +++K +I ++E + LL++A + L I C
Sbjct: 125 ALNTGKARKLKGFGVKTEENLKNKIEKYESFKNTYLLKEALGILDELKRYIKKCPGVSRV 184
Query: 363 --GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD 420
G RR K L++++ +++S + +Y++KL F+ EE +
Sbjct: 185 KMTGEARRKKELVNSLEILVASKEKES----VLEYLRKLS----------FAKSIEEKEE 230
Query: 421 SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 480
+G L T+ E RI + P D++ F L TG+ +++ +A+ GY+L
Sbjct: 231 NGY-----LLTF---EDDIRIKVFIVPPDMFCFYLFYLTGSKDHVQKMETIADDAGYQLT 282
Query: 481 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
GL+ + + +K E+E++ LG ++ P R
Sbjct: 283 IKGLYKDS------------SKIKVKNEEEIYTTLGVSYIIPELR 315
>gi|354613311|ref|ZP_09031236.1| PHP domain protein [Saccharomonospora paurometabolica YIM 90007]
gi|353222353|gb|EHB86666.1| PHP domain protein [Saccharomonospora paurometabolica YIM 90007]
Length = 574
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 55/299 (18%)
Query: 242 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301
AD+++ +PG+G S+ + E + TG+++ LE + + E+ +GP A +++
Sbjct: 51 ADELRAVPGVGSSIAKKVDEYLRTGRVAALERL-RGRIPAGVRALTEIPTLGPRKAMQIH 109
Query: 302 -EKGHRTLDDL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 343
E G ++D+L + E++L R G+ + R+ +
Sbjct: 110 TELGVSSVDELERALDAERVRELKGFGPRTEENL----RRGIDVLRQSEGRVHLDVALSV 165
Query: 344 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 403
+ A EV+ V GS RR + + GD+DV+ D ++ +V E+
Sbjct: 166 AEEVTAALREVIGCVDCAWAGSLRRMRETVGDVDVLASAEDSAP---LMAAFV----ELP 218
Query: 404 FLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDV 463
+ E L T T + V T+ L ++D ++ P + L +TG+
Sbjct: 219 QVAEVLAHGT-----TKTSVRTHKNL----------QVDLRLVPPQAWGAALQYFTGSKA 263
Query: 464 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
N R R +A G++L + GLF A + V +R TE++V+ LG PW+ P
Sbjct: 264 HNIRTRGIAVRHGWKLSEYGLFDADT----DELVVSR------TEEDVYARLGLPWIPP 312
>gi|71411546|ref|XP_808017.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma cruzi strain CL
Brener]
gi|70872136|gb|EAN86166.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 332
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 63/235 (26%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-------LPFKI--------- 239
PD + + +IF +L I AL E ++ SY A+ +++ LP I
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 240 --ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 297
E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVNATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 298 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 316
Y+K G +++ +L+ +ED
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGGNCGNSGGAKKGSKKTSAGDEDPVL 277
Query: 317 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRR 368
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRR 331
>gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946]
Length = 576
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 148/352 (42%), Gaps = 65/352 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 252
N I+ +F ++ ++ LG++ R +Y +A V+ L IE + ++G+PGIG
Sbjct: 3 NAEISRLFQEMADMLEFLGDNPFRIRAYRQAARVLADLETPIEDLARQGPNTLEGIPGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
+ IQE + +GK++ E + + + + G+GP TAQ L+ + +D L
Sbjct: 63 PDLAAKIQEYLQSGKIAAHEELARKVPAGVLEVM-RIPGVGPKTAQLLWSR--LGVDSLA 119
Query: 313 NEDSLTHSQRL----------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-----LPE 357
+ S+R+ L+ +++ + + +L + E + LP+
Sbjct: 120 KLRAALESKRVLELPRFGEKKRLRLLENLALAQSATQRRPLGSVLWRVRELLAAIRGLPQ 179
Query: 358 V-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
V C GS RR K + GDLD ++ + + L+++ + +
Sbjct: 180 VEQAECCGSVRRYKETVGDLDFLVAT---RQGEQVLARFTQ------------LPGIADV 224
Query: 417 EGTDSGVDTYF---GLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
E T F GL ++D K+ P + + GL TG+ + RLR LA
Sbjct: 225 EAVGENRATVFLEDGL----------QVDLKIVPPESWGSGLQYLTGSKAHSIRLRKLAL 274
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+G +L++ G++ G+ E+ V+ LG P++ P R
Sbjct: 275 EQGLKLNEYGVWKGEKRIAGRD------------EESVYAALGLPFIPPPLR 314
>gi|238577033|ref|XP_002388251.1| hypothetical protein MPER_12749 [Moniliophthora perniciosa FA553]
gi|215449367|gb|EEB89181.1| hypothetical protein MPER_12749 [Moniliophthora perniciosa FA553]
Length = 332
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG--IGKSMQ 256
N+++ I GK + + + S+ +AI V+ L I A+ VK L G IG S+Q
Sbjct: 15 NRHVQPIKGKEVEEESPVRNPYKVRSFQRAINVVGGLDKPIGKAEDVKALKGLGIGSSIQ 74
Query: 257 DHIQEIV----TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312
I +++ T K+ E + K+ +V IGP A++L KG ++DDL
Sbjct: 75 KRIVDLLNGNYTPRKVDPEERKNEQRKLLIRLELEKVPYIGPTAAEQLVNKGCESIDDLL 134
Query: 313 NED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYR 367
+ L +QR+G+K++ ++ + R E E + L++ E +P +I+C GSYR
Sbjct: 135 RKKYFIELKPTQRIGVKFYQHLQQPVVREEAEAIAELVR----ETMPADGDVIIC-GSYR 189
Query: 368 RGKASCGDLDVVIMHP 383
R + ++I HP
Sbjct: 190 RNFPIASSVVLLIQHP 205
>gi|421477725|ref|ZP_15925525.1| PHP domain protein [Burkholderia multivorans CF2]
gi|400226001|gb|EJO56119.1| PHP domain protein [Burkholderia multivorans CF2]
Length = 633
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 135/349 (38%), Gaps = 59/349 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N +F ++ ++ G + R +Y A I +P + ++ +P IG
Sbjct: 50 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPSMLADGGELARIPSIGP 109
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 110 DLASKLREIAQTGTCELQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 168
Query: 313 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 357
E H + L L D+ R PR + + LL++ +P
Sbjct: 169 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPVATDVLAPLLERL--RAVPG 226
Query: 358 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
VI + GS RR + + GDLD+++ S F R D + ++
Sbjct: 227 VIEAVAAGSVRRRRETVGDLDILV------------SARDAAAVADAFTRGDAVERVLAK 274
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T S + GL ++D +V D + L+ +TG+ N LR +A++ G
Sbjct: 275 GKTRSSIVLACGL----------QVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAAG 324
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F R + TE V+D +G W+ P R
Sbjct: 325 LKINEYGVF------------RGEERIAGATEASVYDAIGLQWVPPELR 361
>gi|443694526|gb|ELT95637.1| hypothetical protein CAPTEDRAFT_213338 [Capitella teleta]
Length = 400
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 219 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 278
+ R+ ++ + + I L I+ +KGLP IGK ++ +Q+I+ TG H E+ E
Sbjct: 156 NSRALAFRRGMCTIASLENPIKRWSDIKGLPHIGKHIELVVQDILETG------HSEEAE 209
Query: 279 KVRTISLF---GEVWGIGPATAQKLYEKGHRTLDD-LKNEDSLTH-SQRL--GLKYFDDI 331
+++ F V+G+GP+TAQK + G R + D +++ D H +RL GL + D+
Sbjct: 210 CIQSSVWFKVVDGVFGVGPSTAQKWFNAGFRNICDVIQSSDVQNHRDERLLYGLAFHADL 269
Query: 332 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR--GKASCGDL 376
+ + E E L++K + PE + G + G +C ++
Sbjct: 270 NIPVCKSEAVFWEDLVKKELAAIDPEATVTLTGGFSSYGGIGTCTNI 316
>gi|20067743|emb|CAD29112.1| chimeric DNA-directed DNA polymerase xf4-3n [synthetic construct]
Length = 188
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 27/180 (15%)
Query: 353 EVLPEVIILCG---GSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFL 405
++L + I+ G GS+RRG S GD+DV++ HP+ S L + V++L++++ +
Sbjct: 28 KILSKNIVAVGSLRGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRRI 87
Query: 406 REDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN 465
+ L FS + + TY ++D P+D Y G++ +TG+D+ N
Sbjct: 88 K-GLSFSVKVCGERKCVLFIEWEKKTY-------QLDLFTAPKDQYYCGVLYFTGSDIFN 139
Query: 466 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ +R A + Y+L+ GLF + LK TEKE+ LGF + P +R
Sbjct: 140 KNMR--AHALNYKLNQYGLFKN----------QTLVPLKITTEKELIKELGFTYRIPKKR 187
>gi|406984248|gb|EKE05334.1| hypothetical protein ACD_19C00355G0014 [uncultured bacterium]
Length = 555
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 48/281 (17%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GH 305
+P IGKS+ +H+ EI TGK + E KD L + +G TA K+ + +
Sbjct: 58 IPSIGKSIAEHLNEIFRTGKSTHFEELMKDIPQEAFVLMA-LPKVGLKTAMKMMSELPKN 116
Query: 306 RTLDDLKNEDSL-THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 364
++ ++ L T +RL L Y +++ + + VE ++ ++ +VL G
Sbjct: 117 ELIEKIREAQKLMTKDKRLLLPYAENVASEV----VEWIKNGVEVEKIDVL--------G 164
Query: 365 SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVD 424
S RR A+ GD+D+ + + + ++V K+ K + + + S+
Sbjct: 165 SLRRKSATVGDIDIAVATNNPTE---VIERFVNYSKKQKIIEKGEVTSS----------- 210
Query: 425 TYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 484
PG ++D V D Y L +TG+ N LR + KGY + + G+
Sbjct: 211 -----ILLPGDV---QVDLLVMIPDAYGNALQHFTGSKNHNIALREYSLKKGYSMSEHGI 262
Query: 485 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+G G+R TEKE++ LG ++EP R
Sbjct: 263 --KNTKTGKTVGIR--------TEKELYKLLGLNYIEPELR 293
>gi|257389025|ref|YP_003178798.1| PHP domain-containing protein [Halomicrobium mukohataei DSM 12286]
gi|257171332|gb|ACV49091.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
Length = 577
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 142/346 (41%), Gaps = 45/346 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 253
N I F ++ A G D + +Y +A I + P +E D V + G+G
Sbjct: 4 NDEIARQFEAFADLLDAKGVDYKPRAYRRAAENIREYPQAVEGLAQEGEDAVGEIDGVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ + E V TG + +LE ++E ++ V G+GP TA LYE+ G TLDDL+
Sbjct: 64 AIASKVVEYVDTGHIEELEAL-REEYPLDMAAITSVEGVGPKTAGTLYEELGIETLDDLE 122
Query: 313 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEV-------I 359
+ Q + G K +I I +LL A GE V+ +
Sbjct: 123 SAAEAGDIQTVKGFGAKTEQNILDGIDFAREAHERQLLGDARPNGERVVEYLDTVDAIAS 182
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
+ GS RR +A+ GD+DV++ D + + + ++
Sbjct: 183 VELAGSLRRWRATIGDVDVLVGSDDAERVVAAFADW-----------------PEADSVI 225
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
++G DT L R RID +V + + L +TG+ N +R A + ++
Sbjct: 226 EAG-DTKASL-----RADGVRIDLRVVVPEEFGAALQYFTGSKAHNVAVRNRAIERDLKV 279
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F Q RA + +TE V++ L W+ P R
Sbjct: 280 NEYGIFDVAGVEDDDQ--RAGERIGGETEASVYEPLEMDWVPPELR 323
>gi|448419747|ref|ZP_21580591.1| DNA polymerase iv (family x) [Halosarcina pallida JCM 14848]
gi|445674661|gb|ELZ27198.1| DNA polymerase iv (family x) [Halosarcina pallida JCM 14848]
Length = 582
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 141/333 (42%), Gaps = 53/333 (15%)
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
N YR E+ R+ A PV E E + V + G+G+++ + E TG++++
Sbjct: 28 NTYRRAAENIRAH----ARPVEE---LAAEGQEAVGEIQGVGEAISSKVVEYFETGEIAE 80
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLK 326
LE + V +L V G+GP T LYE G TLD+L+ E + + G K
Sbjct: 81 LEELRAELPVDMAALTS-VEGVGPKTVASLYEALGITTLDELEAAAEEGRIREVKGFGPK 139
Query: 327 YFDDIKTRIP-RHEVEQMERL-------------LQKAGEEVLPEVIILCGGSYRRGKAS 372
++I+ +P ++ ERL L+ G +V GS RR + +
Sbjct: 140 TEENIRENVPFARRAQERERLGDARPLADDALAYLRADGAVERADV----AGSIRRWRDT 195
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
GD+DV++ + + +V D+I + S+ S G+
Sbjct: 196 IGDVDVLVAS---EEAAAVVDAFVDWPAA-----NDVIEAGESKASVRSN-----GI--- 239
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
R+D +V + + L +TGN NRR+R +A +G ++++ G+F + +
Sbjct: 240 -------RVDLRVVVPEEFGAALQYFTGNREHNRRVRNVAIERGLKMNEYGVFDVSDVAD 292
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G R + +TE ++ + P + P R
Sbjct: 293 PDAGQRVGERVAGETEDSMYAAVDLPPIPPELR 325
>gi|20067717|emb|CAD29099.1| chimeric DNA-directed DNA polymerase xf5-5e [synthetic construct]
Length = 193
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 32/208 (15%)
Query: 325 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 384
+ + +D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P+
Sbjct: 11 VNHLEDFEKRIPREEMLQMQDIVLNEVKKLDPEYI---AGSLRREEKMLNDVDLLIIVPE 67
Query: 385 RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH- 439
+K L K+V ++F+ + L G + G+C P E H
Sbjct: 68 KK-----LLKHVLPNIRIRFITDTL----------SKGETKFMGVCQLPSENDENEYPHR 112
Query: 440 RIDFKVYPR-DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 498
RID ++ P+ + + + +TG ++ +R+ A KG+ +++ + P G GV
Sbjct: 113 RIDIRLIPKAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV- 164
Query: 499 ARTSLKFDTEKEVFDFLGFPWLEPHERN 526
A L D+E+++FD++ + + EP +R+
Sbjct: 165 AGEPLPVDSEQDIFDYIQWRYREPKDRS 192
>gi|229918289|ref|YP_002886935.1| hypothetical protein EAT1b_2572 [Exiguobacterium sp. AT1b]
gi|229469718|gb|ACQ71490.1| PHP domain protein [Exiguobacterium sp. AT1b]
Length = 564
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 48/316 (15%)
Query: 224 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 283
++ KA +E ++E D + + GIGK ++E TG+ LE +++ +
Sbjct: 29 AFRKAATALENTDLELEDIDDLTSISGIGKGTAAVLEEYRDTGRSEVLEALQEEIPFGLM 88
Query: 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKN--EDSLTHS---------QRLGLKYFDDIK 332
L ++ G+G KL E G L+ L ED S ++L L +++
Sbjct: 89 KLL-KIQGLGGKKLAKLREIGVVDLESLIRVLEDGTAASLPGFGAKSVEKL-LAAAKNLE 146
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIIL---CGGSYRRGKASCGDLDVVIMHPDRKSHK 389
+R R M ++++ E + E ++L GGS+RR + +C DLD +I
Sbjct: 147 SRPERLAYAVMRPIVEEINEVLEKETLVLRHSVGGSFRRAEETCKDLDFII--------- 197
Query: 390 GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRD 449
+E LRE L+ E +G +T L RE +DF++
Sbjct: 198 --------ATEEPIELREKLLALPFINEVIAAG-ETKVSLVLE--REEMVSVDFRMVEPG 246
Query: 450 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 509
+A L +TG+ N R+R LA++KG + + YG G+ + +TE+
Sbjct: 247 AFAATLHHFTGSKDHNVRMRQLAKAKGESISE-------YGVETADGL-----WQPETEE 294
Query: 510 EVFDFLGFPWLEPHER 525
E+F+ G P++ P R
Sbjct: 295 ELFERYGLPFIPPELR 310
>gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
Length = 586
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 132/306 (43%), Gaps = 59/306 (19%)
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
S ++K + G+G S I+E++ TG + KLE + L + G+GP T +L
Sbjct: 58 SVRELKAIDGVGASTAAKIRELLDTGAIDKLEKLRAKYPPAFVEL-SRIPGLGPKTLMRL 116
Query: 301 Y-EKGHRTLDDL-----------------KNEDSLTHS-QRLGLKYFDDIKTRIPRHEVE 341
E ++DDL K+ED+L + +RLG+ D R P +
Sbjct: 117 RGELDVHSVDDLRKALEAKKLRTLSGFGAKSEDNLRRAIERLGMSGKD---RRTPIADAL 173
Query: 342 QMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 399
+ + + A E LPEV + C GS RR + + GD+D+V+ D S V +
Sbjct: 174 PIAQRI-TAALEALPEVERVSYC-GSLRRFRETIGDIDIVVAAGD--------SAPVME- 222
Query: 400 KEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWT 459
F+ +++ + T + V T GL +ID +V + ++ +T
Sbjct: 223 ---AFVALNVVAEVLARGDTKTSVLTREGL----------QIDLRVVAPAAFGAAILYFT 269
Query: 460 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 519
G+ N +LR A +G L++ GL + G L ++E+ +++ L PW
Sbjct: 270 GSRNHNIKLRQRALQRGATLNEYGLSDSDSGE----------VLASESEEAIYEALSLPW 319
Query: 520 LEPHER 525
+ P R
Sbjct: 320 IPPPMR 325
>gi|269987017|gb|EEZ93292.1| PHP domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 568
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 143/347 (41%), Gaps = 57/347 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP---FKIESADQVKGLPGIGKSM 255
NK++ E + +I G +Y A I L KI ++ L G+GKS+
Sbjct: 4 NKDLAEKLNNIADILELEGVKWEPRAYRTAALTISSLSEDINKIYKEGKLLSLEGVGKSI 63
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK-- 312
+ I+E + GK+SK E ++ + F ++ G+GP LY+ G R + DLK
Sbjct: 64 ANSIEEYLQNGKISKYEKLKEKYPI-DFETFRKIRGLGPKRVYALYKALGIRDIKDLKEA 122
Query: 313 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL-------------QKAGEEVLPEV 358
+++ + G K ++I+ + + +RLL + V V
Sbjct: 123 LENHKISNIEGFGEKSEEEIRKNLQSFMTVKNDRLLLGYVIDYTNLILKKLRNSNVFERV 182
Query: 359 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
I GS RR K + GD+D++ + + F SK D + +
Sbjct: 183 EI--AGSLRRRKETIGDVDILAISDKPEIGMDFFSKI------------DEVTGIVVKGP 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+ V+ G D ++ ++ + + +TGN N ++R +A SKG +
Sbjct: 229 KKTTVELSIGTTC----------DIRILSKESFGAAMQYFTGNKDHNVKIRKIAISKGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ GLF R ++++ E+E+++ LG ++ P R
Sbjct: 279 LNEYGLF------------RGKSAIAGKDEEEIYNKLGMEFIPPELR 313
>gi|307726755|ref|YP_003909968.1| PHP domain-containing protein [Burkholderia sp. CCGE1003]
gi|307587280|gb|ADN60677.1| PHP domain protein [Burkholderia sp. CCGE1003]
Length = 580
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 136/335 (40%), Gaps = 73/335 (21%)
Query: 211 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 270
N R++GE RS I + +K +PGIG + I EI +G
Sbjct: 34 NAARSVGEHGRSVQTM------------IGQGEDLKIIPGIGDDLAGKIAEIAGSGTCEL 81
Query: 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGL---- 325
LE K L ++ G+GP + L+E +TL+DL D R+ L
Sbjct: 82 LERLRKTLPAAITELL-QIPGLGPKRVRALHEALDIQTLEDL---DRAARQGRIRLLPGF 137
Query: 326 ------KYFDDIKTRIPRHE-------VEQMERLLQ--KAGEEVLPEVIILCGGSYRRGK 370
+ ++I+ R+ + + E LL+ +AG+ V + GS+RR +
Sbjct: 138 GEKTEQRIIENIEARLNKSRRFRLDVATQYAEPLLKYLQAGQGVDA---VFAAGSFRRLR 194
Query: 371 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430
+ GDLDV++ D + + Y +E+K + + T S V G+
Sbjct: 195 DTVGDLDVLVAARDSAAATRRFTHY----EEVK--------TVLASGDTRSSVVLACGM- 241
Query: 431 TYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 490
++D +V + L+ +TG+ N LR +A+++G ++++ G+F T
Sbjct: 242 ---------QVDLRVVAPESIGAALVYFTGSKAHNIALRRVAQTQGLKINEYGVFKGTQR 292
Query: 491 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G +TE V+ +G W+ P R
Sbjct: 293 IAG------------ETEDSVYRTIGLGWVPPELR 315
>gi|448300512|ref|ZP_21490511.1| DNA-directed DNA polymerase [Natronorubrum tibetense GA33]
gi|445585331|gb|ELY39626.1| DNA-directed DNA polymerase [Natronorubrum tibetense GA33]
Length = 583
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 153/347 (44%), Gaps = 44/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 252
N I F + ++ A + + +Y +A I+ P ++E+ D+ ++ + G+G
Sbjct: 4 NAEIAGRFEEFADLLAADDVEYKPRAYRRAAENIQAHPVPIGDRVEAGDEQILEEIDGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ + E V TG + +LE ++ + I+ + G+GP TA KLY E G +TLDDL
Sbjct: 64 DAIASKVVEYVETGSIEELEELREELPI-DIADITRIEGVGPKTAGKLYRELGVQTLDDL 122
Query: 312 KNE---DSLTHSQRLGLKYFDDIKTRIP-RHEVEQMERLLQ--KAGEEVLP-----EVII 360
+ + + G K ++I+ I EV Q L + ++VL E +
Sbjct: 123 EEAAEAGEIREIKGFGPKTEENIREGIEFAREVGQRHLLGEGRPLADDVLAFLESLEAVE 182
Query: 361 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
C GS RR + + GD+DV++ + ED+I S E
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLVGTE---------------------VGEDVIESFVDWES 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
DS +++ G R R+D +V + + L +TG+ N RLR A ++ +
Sbjct: 222 VDSEIES--GPEKASVRVGEIRVDLRVVVPEEFGSALQYFTGSKDHNVRLRNYAIARDMK 279
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L++ G F + + R + +TE +++ LG PW+ P R
Sbjct: 280 LNEYGAFDVSTVDDPESDQRVGERVAGETEAGMYEALGLPWIPPELR 326
>gi|448353174|ref|ZP_21541951.1| DNA-directed DNA polymerase [Natrialba hulunbeirensis JCM 10989]
gi|445640751|gb|ELY93837.1| DNA-directed DNA polymerase [Natrialba hulunbeirensis JCM 10989]
Length = 583
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 147/324 (45%), Gaps = 46/324 (14%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
RR+ +A PV + ++ D+ + + G+G ++ I E V TG++ +LE + +
Sbjct: 31 RRAAENIRAHPV--PIGDRVADGDEEILDEIDGVGDAISAKIVEYVETGEIEELEELKAE 88
Query: 278 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 333
+ I+ + G+GP TA KLY E G TLDDL++ Q + G K ++I+
Sbjct: 89 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQAVKGFGPKTEENIRD 147
Query: 334 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 383
I +LL +A ++VL +V+ C GS RR + + GD+DV++
Sbjct: 148 NIEFAREVGQRQLLGEARPLADDVLAFLESLDVVERCEVAGSIRRWRETIGDVDVLVATN 207
Query: 384 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYF--GLCTYPGRELRHRI 441
+ ++ + ++V G DS VD+ G R R+
Sbjct: 208 ENET---VIEQFV---------------------GWDS-VDSEIESGPAKASVRIGESRV 242
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 501
D +V D + L +TG+ N RLR A + ++++ G+F + G +G R
Sbjct: 243 DLRVVVPDEFGSALQYFTGSKDHNVRLRNYAIDRDLKVNEYGVFDVSDLEDGDEGQRVGE 302
Query: 502 SLKFDTEKEVFDFLGFPWLEPHER 525
+ +TE +++ LG PW+ P R
Sbjct: 303 RIAGETEGGMYNALGLPWIPPELR 326
>gi|20067721|emb|CAD29101.1| chimeric DNA-directed DNA polymerase xf5-2e [synthetic construct]
Length = 194
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 31/203 (15%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P++K
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSLRREEKMLNDVDLLIIVPEKK-- 74
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDF 443
L K+V L ++F+ + L G + G+C P E H RID
Sbjct: 75 ---LLKHV--LPNIRFITDTL----------SKGETKFMGVCQLPSENDENEYPHRRIDI 119
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
++ + + + +TG ++ +R+ A KG+ +++ + P G GV A L
Sbjct: 120 RLIAEE-KPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPL 170
Query: 504 KFDTEKEVFDFLGFPWLEPHERN 526
D+E+++FD++ + + EP +R+
Sbjct: 171 PVDSEQDIFDYIQWRYREPKDRS 193
>gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus]
Length = 320
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 139/313 (44%), Gaps = 63/313 (20%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 251
N+ + +F ++ + LG++ R +YY+A + L IE + KG LPGI
Sbjct: 3 NQELARVFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAK-KGKEALLELPGI 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
G + D I E + TG++ K E + R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLADKILEFLATGRVKKDEEL-SGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEK 120
Query: 311 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE------------------ 352
LK ++L L LK F K +++ L Q AG+
Sbjct: 121 LK--EALERGDLLRLKGFGAKKA----ERIKEGLLLAQAAGKRRPLGAVLFLARNLLEQN 174
Query: 353 EVLPEV--IILCGGSYRRGKASCGDLDVVI--MHPDRKSHKGFLSKYVKKLKEMKFLRED 408
LP V LC GS RR K + GDLD ++ + P+ K GF++ + +KE
Sbjct: 175 RALPGVKKAELC-GSARRYKDTVGDLDYLVASLEPE-KVVAGFVA--LPGVKE------- 223
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
+++ E T V GL ++D +V P + Y GL TG+ + RL
Sbjct: 224 -VYAKGRERAT---VFLKNGL----------QVDLRVVPEESYGAGLQYLTGSKEHSIRL 269
Query: 469 RLLAESKGYRLDD 481
R LA+ G +L +
Sbjct: 270 RALAQGMGLKLSE 282
>gi|448340713|ref|ZP_21529683.1| PHP domain protein [Natrinema gari JCM 14663]
gi|445629653|gb|ELY82929.1| PHP domain protein [Natrinema gari JCM 14663]
Length = 583
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 146/350 (41%), Gaps = 48/350 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 250
N + F + ++ A G + + +Y +A I P I AD+V + + G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPI--ADRVAEGDEAVLENIDG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 309
+G ++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISSKIVEYVETGEIDELEALRAELPI-DIAAITRIEGVGPKTAGKLYRELGIETLD 120
Query: 310 DLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EV 358
DL+ Q + G K +I + +LL +A ++VL
Sbjct: 121 DLETVAEAGEVQEIKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPA 180
Query: 359 IILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
+ C GS RR + + GD+DV+ D ++ + ++V +
Sbjct: 181 VDRCEVAGSIRRWRETVGDVDVLAATADGEA---VVERFV------------------AW 219
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
E D +++ G R R+D +V + L +TG+ N LR A +
Sbjct: 220 ESVDDEIES--GPEKASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRD 277
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+L++ G F + + + R + +TE+ +++ LG PW+ P R
Sbjct: 278 MKLNEYGAFDVSDIADHEADQRIGDRVAGETEEGMYEALGLPWIPPELRT 327
>gi|433591283|ref|YP_007280779.1| DNA polymerase IV (family X) [Natrinema pellirubrum DSM 15624]
gi|448333040|ref|ZP_21522258.1| PHP domain protein [Natrinema pellirubrum DSM 15624]
gi|433306063|gb|AGB31875.1| DNA polymerase IV (family X) [Natrinema pellirubrum DSM 15624]
gi|445624394|gb|ELY77778.1| PHP domain protein [Natrinema pellirubrum DSM 15624]
Length = 583
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 64/357 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 250
N I F + ++ A + + +Y +A + P I AD+V + + G
Sbjct: 4 NAEIAARFEEFADLLEADDVEYKPRAYRRAAENVRAHPSPI--ADRVADGDREVLENIDG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 309
+G ++ I E V TG++ +L + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISSKIVEYVETGEIEELAELRAELPI-DIADITRIEGVGPKTAGKLYRELGVETLD 120
Query: 310 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME-----------RLLQKA---GEEVL 355
DL++ Q D+K P+ E +E +LL +A ++VL
Sbjct: 121 DLEDAAEAGEIQ--------DVKGFGPKTEANILENLEFARTVGQRQLLGEARPLADDVL 172
Query: 356 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
E + C GS RR + + GD+DV+ D ++ + ++V
Sbjct: 173 AYLEGLEAVERCEVAGSIRRWRETIGDVDVLAATEDGEA---VVEQFV------------ 217
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
S E D +++ G R R+D +V + L +TG+ N L
Sbjct: 218 ------SWESVDDEIES--GPEKASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVAL 269
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
R A +G +L++ G F + + G R + +TE +++ LG W+ P R
Sbjct: 270 RNYAIDRGMKLNEYGAFDVSDVEDHEAGQRVGDRVAGETEAGMYEALGLAWIPPELR 326
>gi|448313810|ref|ZP_21503522.1| DNA-directed DNA polymerase [Natronolimnobius innermongolicus JCM
12255]
gi|445597120|gb|ELY51198.1| DNA-directed DNA polymerase [Natronolimnobius innermongolicus JCM
12255]
Length = 583
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 142/322 (44%), Gaps = 42/322 (13%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
RR+ +A PV + +IE D+ + + G+G ++ + E V TG + +LE +
Sbjct: 31 RRAAENIQAHPV--PIADRIEDGDEEILDEIDGVGDAISSKVVEYVETGSIEELEELRAE 88
Query: 278 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 333
+ I+ + G+GP TA KLY E G TLDDL+ + Q + G K ++I+
Sbjct: 89 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEAAAEASEIQAVKGFGPKTEENIRD 147
Query: 334 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 383
I +LL +A ++VL E + C GS RR +A+ GD+D ++
Sbjct: 148 GIEFAREVGQRQLLGEARPLADDVLAFLEGLEAVERCEVAGSIRRWRATIGDVDALV--- 204
Query: 384 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 443
+ G E++I S + D+ +++ + E+ R+D
Sbjct: 205 --ATDAG----------------EEVIESFVDWDSVDAEIESGPEKASIRVGEI--RVDL 244
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
+V + L +TG+ N LR A + +L++ G F + + G R +
Sbjct: 245 RVVVPGEFGSALQYFTGSKDHNVALRNYAIDREMKLNEYGAFDVSDLEDAETGQRVGDRV 304
Query: 504 KFDTEKEVFDFLGFPWLEPHER 525
+TE ++D LG PW+ P R
Sbjct: 305 AGETEAGMYDALGLPWIPPELR 326
>gi|349576753|dbj|GAA21923.1| K7_Pol4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 581
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 47/281 (16%)
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 176
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQEDK 173
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 237 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
F + S ++ L IG S+ IQ I+ TG L L E + F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCYGIGSE 283
Query: 296 TAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVEQ 342
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 284 IAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECFA 334
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 335 HLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGL 455
+++LKEMK L+ EE +D Y L G R R+DF D G
Sbjct: 456 LEELKEMKNDEGTLLIEEEEEETKLKPIDQYMSLNAKDGNYCR-RLDFFCCKWDELGAGR 514
Query: 456 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 515
I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+ L
Sbjct: 515 IHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFELL 562
Query: 516 GFPWLEPHERNL 527
+ EP RN+
Sbjct: 563 NLKYAEPEHRNI 574
>gi|323349577|gb|EGA83798.1| Pol4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 600
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 47/281 (16%)
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 176
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 237 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
F + S ++ L IG S+ IQ I+ TG L L E + F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCYGIGSE 283
Query: 296 TAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVEQ 342
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 284 IAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECFT 334
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 335 HLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTD-SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
+++LKEMK L+ EE T +D Y L G R R+DF D G
Sbjct: 456 LEELKEMKNDEGTLLIEEEEEEETKLKPIDQYMSLNAKDGNYCR-RLDFFCCKWDELGAG 514
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 515 RIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFEL 562
Query: 515 LGFPWLEPHERNL 527
L + EP RN+
Sbjct: 563 LNLKYAEPEHRNI 575
>gi|421614601|ref|ZP_16055654.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SH28]
gi|408494610|gb|EKJ99215.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SH28]
Length = 589
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 147/367 (40%), Gaps = 87/367 (23%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 249
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 308
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 309 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 338
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQACD 190
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
+EQME GSYRRG+ + GDLD++ + DR++ L+ +
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVASDREAAMDHLANFPGL 233
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
+ + R D S V F ++D ++ + + L +
Sbjct: 234 VSVIG--RGDTKMSIR--------VGKAF------------QVDMRLVDAEEFGAALQYF 271
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ N +R +A+ G ++++ G+F + + + TE++V+ +G P
Sbjct: 272 TGSQAHNIHVRRIAKDHGLKINEYGVFK----------LDDESRVAGATEEDVYQSIGLP 321
Query: 519 WLEPHER 525
W+ P R
Sbjct: 322 WIAPELR 328
>gi|392300802|gb|EIW11892.1| Pol4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 589
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 47/281 (16%)
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 176
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 237 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
F + S ++ L IG S+ IQ I+ TG L L E + F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCYGIGSE 283
Query: 296 TAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVEQ 342
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 284 IAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECFT 334
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 335 HLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTD-SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
+++LKEMK L+ EE T +D Y L G R R+DF D G
Sbjct: 456 LEELKEMKNDEGTLLIEEEEEEETKLKPIDQYMSLNAKDGNYCR-RLDFFCCKWDELGAG 514
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 515 RIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFEL 562
Query: 515 LGFPWLEPHERNL 527
L + EP RN+
Sbjct: 563 LNLKYAEPEHRNI 575
>gi|196231131|ref|ZP_03129991.1| PHP domain protein [Chthoniobacter flavus Ellin428]
gi|196224961|gb|EDY19471.1| PHP domain protein [Chthoniobacter flavus Ellin428]
Length = 584
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 135/319 (42%), Gaps = 47/319 (14%)
Query: 224 SYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
+Y A IE + A +++ + G+GK++ D + E++ TG L E+ + +
Sbjct: 32 AYTNAARAIETYSGDLAKAAGENRLAEISGVGKAIADKLTELIVTGHLMYYENLKAEFPP 91
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRT----LDDLKNEDSLTHSQRLGLKYFDDIKTRIP 336
+F ++ GIGP + L+EK + T L+ + + G K D+I I
Sbjct: 92 GIFEMF-DLQGIGPKKIKALWEKLNVTTIAELEKACKDGRVAALSGFGKKTSDNILAAIQ 150
Query: 337 -------RHEVEQMERLLQKAGEEV--LPEVIILC-GGSYRRGKASCGDLDVVIMHPDRK 386
R + ++ + ++ EE+ LP+V+ C GSYRR K GDLD ++
Sbjct: 151 SRAKHAGRFRLGEIAKDAERMLEELRGLPDVLQACVAGSYRRNKEVVGDLDFIVATNSPA 210
Query: 387 SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVY 446
F F++ +++ S + T S V G+ + D +V
Sbjct: 211 EVSEF------------FVKHEMVESVIANGATKSSVRLKSGI----------QADLRVI 248
Query: 447 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 506
+ F L +TG+ N +R A ++G+ L++ Y G + ++
Sbjct: 249 KNTEFPFALNYFTGSKEHNIIMRQRALARGWTLNE-------YRLGPLENSKSEPPPPIH 301
Query: 507 TEKEVFDFLGFPWLEPHER 525
E++++ LG ++EP R
Sbjct: 302 EERDLYRALGLDYVEPELR 320
>gi|151943833|gb|EDN62133.1| DNA polymerase IV [Saccharomyces cerevisiae YJM789]
gi|190406448|gb|EDV09715.1| DNA polymerase IV [Saccharomyces cerevisiae RM11-1a]
gi|207347327|gb|EDZ73534.1| YCR014Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|365766764|gb|EHN08257.1| Pol4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 582
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 47/281 (16%)
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 176
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 237 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 295
F + S ++ L IG S+ IQ I+ TG L L E + F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCYGIGSE 283
Query: 296 TAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVEQ 342
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 284 IAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECFT 334
Query: 343 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 335 HLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTD-SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
+++LKEMK L+ EE T +D Y L G R R+DF D G
Sbjct: 456 LEELKEMKNDEGTLLIEEEEEEETKLKPIDQYMSLNAKDGNYCR-RLDFFCCKWDELGAG 514
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 515 RIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFEL 562
Query: 515 LGFPWLEPHERNL 527
L + EP RN+
Sbjct: 563 LNLKYAEPEHRNI 575
>gi|345011461|ref|YP_004813815.1| PHP domain-containing protein [Streptomyces violaceusniger Tu 4113]
gi|344037810|gb|AEM83535.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
Length = 581
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 133/331 (40%), Gaps = 61/331 (18%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274
G+ R+ +Y KA I I D ++ +P +G+S D + E + TG + +E
Sbjct: 24 GDAYRARAYEKAARAIGGHAADISQFDAKALRDIPNVGRSTADKVVEYLRTGTMPAVEEA 83
Query: 275 EKD--EKVRTISLFGEVWGIGPATAQKLYEK-------------GHRTLDDLK-----NE 314
VR ++ + +GP A LYE+ L DLK +E
Sbjct: 84 RAAIPAGVRELT---AIPALGPKKAMILYEELEISSVDQLAQAIEEHQLRDLKGFGPKSE 140
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 374
+++ H G+ RIP E + + A +V GS RR K + G
Sbjct: 141 ENILH----GIALMRAAGDRIPLDEAMDVADDIVAALSKVRGCRRCAYAGSLRRMKETVG 196
Query: 375 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG 434
D+D+++ D +++ + E + H ++ T + T GL
Sbjct: 197 DVDILVAAEDS-------GPFMEAFTGLPLTAEVI---AHGQKKT--SIRTTKGL----- 239
Query: 435 RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 494
++D +V P D + GL+ +TG+ N R+R +A G +L + GLF G
Sbjct: 240 -----QVDLRVLPLDSWGAGLLYFTGSKAHNIRVRAIAVRHGLKLSEYGLFETKSGK--- 291
Query: 495 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
S+ +E++V+ LG W+ P R
Sbjct: 292 -------SIASRSEEDVYARLGMDWIPPTLR 315
>gi|448303190|ref|ZP_21493140.1| DNA-directed DNA polymerase [Natronorubrum sulfidifaciens JCM
14089]
gi|445594197|gb|ELY48364.1| DNA-directed DNA polymerase [Natronorubrum sulfidifaciens JCM
14089]
Length = 583
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 136/322 (42%), Gaps = 42/322 (13%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
RR+ +A PV P + ++ + G+G ++ I E V TG + +LE +
Sbjct: 31 RRAAENIRAHPVPIADPVASGNEAVLEEIDGVGDAISAKIVEYVETGTIEELEELRAELP 90
Query: 280 VRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 338
+ I+ + G+GP TA KLY E G +LDDL+ Q + K F + R
Sbjct: 91 I-DIADITRIEGVGPKTAGKLYRELGVESLDDLEAAAEAGDVQEI--KGFGPKTEQNIRD 147
Query: 339 EVEQMERLLQK--------AGEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 383
+E ++ Q+ ++VL E + C GS RR + + GD+DV+
Sbjct: 148 NLEFARQIGQRYLLGEGRPLADDVLAFLEGLEAVERCEVAGSIRRWRETIGDVDVLA--- 204
Query: 384 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 443
+ G ED++ + E D +++ G R R+D
Sbjct: 205 --ATDAG----------------EDVVEAFVDWESVDGEIES--GPEKASVRIGEIRVDL 244
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
+V + + L +TG+ N RLR A +G +L++ G F + G+R +
Sbjct: 245 RVVVPEEFGSALQYFTGSKDHNVRLRNYAIDRGMKLNEYGAFDVSEIDDPDAGLRVGDRV 304
Query: 504 KFDTEKEVFDFLGFPWLEPHER 525
DTE +++ LG PW+ P R
Sbjct: 305 AGDTEAGMYEALGLPWIPPELR 326
>gi|10383782|ref|NP_009940.2| Pol4p [Saccharomyces cerevisiae S288c]
gi|46397824|sp|P25615.4|DPO4_YEAST RecName: Full=DNA polymerase IV; Short=POL IV
gi|14588928|emb|CAA42331.2| DNA polymerase [Saccharomyces cerevisiae]
gi|256271878|gb|EEU06905.1| Pol4p [Saccharomyces cerevisiae JAY291]
gi|285810707|tpg|DAA07491.1| TPA: Pol4p [Saccharomyces cerevisiae S288c]
gi|290770666|emb|CAY78217.2| Pol4p [Saccharomyces cerevisiae EC1118]
Length = 582
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 49/282 (17%)
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 176
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 237 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGP 294
F + S ++ L IG S+ IQ I+ TG L L + ++K++ F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNCYGIGS 282
Query: 295 ATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVE 341
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 283 EIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECF 333
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 334 THLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 396 VKKLKEMKFLREDLIFSTHSEEGTD-SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG 454
+++LKEMK L+ EE T +D Y L G R R+DF D G
Sbjct: 456 LEELKEMKNDEGTLLIEEEEEEETKLKPIDQYMSLNAKDGNYCR-RLDFFCCKWDELGAG 514
Query: 455 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 514
I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 515 RIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFEL 562
Query: 515 LGFPWLEPHERNL 527
L + EP RN+
Sbjct: 563 LNLKYAEPEHRNI 575
>gi|354611985|ref|ZP_09029937.1| PHP domain protein [Halobacterium sp. DL1]
gi|353191563|gb|EHB57069.1| PHP domain protein [Halobacterium sp. DL1]
Length = 582
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 127/300 (42%), Gaps = 38/300 (12%)
Query: 240 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 299
E + V+ + G+G+++ I E V TG++++LE + V I V G+GP T
Sbjct: 50 EGVEAVQRIDGVGEAIAAKIVEYVETGEIAELEEEREKLPV-DIEELTAVEGVGPKTVGA 108
Query: 300 LYEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GE 352
LYE G ++LDDL+ + G +I + I Q LL A GE
Sbjct: 109 LYEALGIQSLDDLEAAAEAGEIREVSGFGETTEQNILSGIAFAREAQERELLGNARPVGE 168
Query: 353 EVLPEVI-------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 405
VL V GGS RR K + GD+DV+ D ++ + L E K +
Sbjct: 169 SVLEFVRSHDAVERADVGGSLRRWKPTIGDVDVLAASDDGEA-------VGRALTEWKRV 221
Query: 406 REDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN 465
+ + F +GV R+D +V Y L +TGN N
Sbjct: 222 GDTIDFGPTKTSVRMNGV----------------RVDLRVVEDAEYGAALQYFTGNKGHN 265
Query: 466 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
LR A + ++++ G+F + + G R L +TE++V++ +G PW+ P R
Sbjct: 266 LTLRNRAIGRDLKVNEYGVFDVSGVADEDAGQRVGELLASETEEDVYEAVGLPWMPPELR 325
>gi|448624081|ref|ZP_21670154.1| DNA polymerase X [Haloferax denitrificans ATCC 35960]
gi|445750048|gb|EMA01487.1| DNA polymerase X [Haloferax denitrificans ATCC 35960]
Length = 582
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 138/347 (39%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREYPKPVEELAAEGEDAVQEIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG++ +L ++ V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELAELREELPVDMAGLTS-VEGVGPKTVGKLYEALGVADLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
E + + G K +I I LL +A V +++ G
Sbjct: 123 AAAREGQIQEVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAYLGDHDAVG 181
Query: 364 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D + +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAAAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 EQKASVRVNGM----------RVDLRVVDPAEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + + G RA T + DTE+ ++ L P + P R
Sbjct: 279 MNEYGMFDISDMADPDDGPRAGTRVAGDTEESMYAALDLPLVPPEMR 325
>gi|417301507|ref|ZP_12088659.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica WH47]
gi|327542194|gb|EGF28686.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica WH47]
Length = 589
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 147/367 (40%), Gaps = 87/367 (23%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 249
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 308
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 309 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 338
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQVCD 190
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
+EQME GSYRRG+ + GDLD++ + DR++ L+ +
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVATDREAAMDHLANFPGL 233
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
+ + R D S V F ++D ++ + + L +
Sbjct: 234 VSIIG--RGDTKMSIR--------VGKAF------------QVDMRLVDAEEFGAALQYF 271
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ N +R +A+ G ++++ G+F + + + TE++V+ +G P
Sbjct: 272 TGSQAHNIHVRRIAKDHGLKINEYGVFK----------LDDESRVAGATEEDVYQSIGLP 321
Query: 519 WLEPHER 525
W+ P R
Sbjct: 322 WIAPELR 328
>gi|32471446|ref|NP_864439.1| DNA polymerase beta family protein [Rhodopirellula baltica SH 1]
gi|32443287|emb|CAD72118.1| DNA polymerase beta family [Rhodopirellula baltica SH 1]
Length = 589
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 147/367 (40%), Gaps = 87/367 (23%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 249
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 308
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 309 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 338
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQVCD 190
Query: 339 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 398
+EQME GSYRRG+ + GDLD++ + DR++ L+ +
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVASDREAAMDHLANF--- 230
Query: 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAW 458
L+ S D+ + G ++D ++ + + L +
Sbjct: 231 --------PGLVSVIGS---GDTKMSIRVGKA--------FQVDMRLVDAEEFGAALQYF 271
Query: 459 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 518
TG+ N +R +A+ G ++++ G+F + + + TE++V+ +G P
Sbjct: 272 TGSQAHNIHVRRIAKDHGLKINEYGVFK----------LDDESRVAGATEEDVYQSIGLP 321
Query: 519 WLEPHER 525
W+ P R
Sbjct: 322 WIAPELR 328
>gi|323356006|gb|EGA87813.1| Pol4p [Saccharomyces cerevisiae VL3]
Length = 547
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 49/282 (17%)
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 176
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 237 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGP 294
F + S ++ L IG S+ IQ I+ TG L L + ++K++ F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNCYGIGS 282
Query: 295 ATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVE 341
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 283 EIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECF 333
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 334 THLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|440713720|ref|ZP_20894317.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SWK14]
gi|436441436|gb|ELP34663.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SWK14]
Length = 577
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 146/364 (40%), Gaps = 87/364 (23%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLPGIG 252
N + +F +L + GE+ R +Y I L P ++D + LPGIG
Sbjct: 3 NSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLPGIG 62
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 311
K++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L+DL
Sbjct: 63 KTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESLEDL 121
Query: 312 -----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH-----EVE 341
K E ++ S+R+ DD+ I +H +E
Sbjct: 122 AAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQACDAIE 181
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 401
QME GSYRRG+ + GDLD++ + DR++ L+ + +
Sbjct: 182 QME-----------------WAGSYRRGRDTVGDLDLLAVASDREAAMDHLANFPGLVSI 224
Query: 402 MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGN 461
+ R D S V F ++D ++ + + L +TG+
Sbjct: 225 IG--RGDTKMSIR--------VGKAF------------QVDMRLVDAEEFGAALQYFTGS 262
Query: 462 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
N +R +A+ G ++++ G+F + + + TE++V+ +G PW+
Sbjct: 263 QAHNIHVRRIAKDHGLKINEYGVFK----------LDDESRVAGATEEDVYQSIGLPWIA 312
Query: 522 PHER 525
P R
Sbjct: 313 PELR 316
>gi|406956854|gb|EKD84891.1| hypothetical protein ACD_38C00146G0023 [uncultured bacterium]
Length = 583
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 133/325 (40%), Gaps = 60/325 (18%)
Query: 224 SYYKAIPVIEKLPFKIES---ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
+Y A IE L +I ++ +PGIG S++DH+ E+ TG++ E +K
Sbjct: 31 AYENAASAIENLTSEIHDLWEEGKLDQIPGIGASLKDHLNELFKTGQVQHWEIIKKGVAP 90
Query: 281 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 340
T F E+ G+GP TA+KL G L+DLK + S L K F +I ++ +
Sbjct: 91 ATFE-FLEIAGVGPKTAEKLAGLGVNNLEDLKKK---LKSGELVKKGFS---AKIAQNIL 143
Query: 341 EQMERLLQKAGEEVLPEVIILCG------------------GSYRRGKASCGDLDVVIMH 382
+++ QK +LP + GS RR A+ GDLD +
Sbjct: 144 GGLDQAGQKGNRMLLPYAAVQADRILNYLKKSPDILQAHPLGSLRRMVATVGDLDFAV-- 201
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGV--DTYFGLCTYPGRELRHR 440
++ K + + K + L + +T +SG+ D G G L+H
Sbjct: 202 -SSRNPKKVVEHFCKMPGIARILDQGEYKATVV---LNSGIQADLLVGKPQSYGALLQH- 256
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
+TG+ N +LR LA+ KG+ L + G+ K+ +
Sbjct: 257 -----------------FTGSKPHNIKLRTLAQRKGFSLSEYGV------RSDKRKATSD 293
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHER 525
++ +TE+E + LG P R
Sbjct: 294 KLIQTETEEEFYKLLGMQVPPPEIR 318
>gi|307107168|gb|EFN55412.1| hypothetical protein CHLNCDRAFT_52641 [Chlorella variabilis]
Length = 691
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 258
++ +T+ GK + + +S +Y A V+ +++ Q LP + S +
Sbjct: 150 SQFLTDALGKQVV-------NHKSLAYAHAAAVVRTCAYRLSPPLQPGRLPYLADSTAEE 202
Query: 259 IQEIVTTGKLSKLEHFEKDEKVR--------------TISLFGEVWGIGPATAQKLYEKG 304
+ EI+ TG KLE F +DE VR T F + G+G +TA+K + +G
Sbjct: 203 VSEILLTGTCDKLERFRRDEAVRDSKGVLRLDSAGAATRRRFARLVGVGASTARKWWGRG 262
Query: 305 HRTLDDLKNED-----------SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 348
T +D++ +LT +QR GL+Y D+ I ++ +M + ++
Sbjct: 263 LSTCEDVEAAAAGQAASWQPPLALTAAQRFGLRYRRDLLEGISAQDLAEMRQAVE 317
>gi|168699735|ref|ZP_02732012.1| DNA polymerase IV (family X) [Gemmata obscuriglobus UQM 2246]
Length = 581
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 47/323 (14%)
Query: 221 RSFSYYKAIPVIEKLPFKIES--AD-QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
R+ +Y+ A V+++LP ++ AD ++ + GIG+++ I +VTTGKL LE
Sbjct: 26 RTNAYHNAARVVQQLPGDLKQLVADGKLGAVRGIGEALSLKITTLVTTGKLPYLEDLRAS 85
Query: 278 EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKT 333
+ L + G+GP + L++ G +++ LK + + G K D I
Sbjct: 86 IPAGMVELL-RLPGLGPKKVKALHDLLGIDSIEKLKAACESGQVAKQKGFGAKTQDKILE 144
Query: 334 RIP-RHEVEQMERL-----LQKAGEEVL---PEVII--LCGGSYRRGKASCGDLDVVIMH 382
I R +V R+ L A E + P VI LCG S RR K + DLD+++
Sbjct: 145 GIRFRDQVGHRVRIDYALPLGTALLEQIRGFPGVIRSELCG-SLRRRKETVADLDILVSS 203
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRID 442
D + + ++VK + ++ L G + G ++ + D
Sbjct: 204 ADAQP---IMDRFVKLPEVLQVL------------GQGPTKSSVLAALHVHGTKVTMQAD 248
Query: 443 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 502
+V D + F L +TG+ N R+R A +G L++ L S
Sbjct: 249 LRVVEDDQFPFALHYFTGSKEHNIRMRQRAIDRGLTLNEYAL------------ANDSRS 296
Query: 503 LKFDTEKEVFDFLGFPWLEPHER 525
+ TE+++F LG P++EP R
Sbjct: 297 VPCKTEEDIFAALGLPYIEPELR 319
>gi|384485891|gb|EIE78071.1| hypothetical protein RO3G_02775 [Rhizopus delemar RA 99-880]
Length = 217
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 196 PDLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 254
P+ NK + + L+ R L GE+ R+ SY I ++ P + S + + + G+G
Sbjct: 80 PNYNKRLICLLS-LVEQSRELEGENIRAASYAHVISALKTYPRPLGSIKEAEKIIGVGVR 138
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314
++ IQ+ + TG + + E E+ RT LF +GP TA+ ++ G+RTL ++ +
Sbjct: 139 IRQKIQQFLETGTIEEAEGLRHSEEFRTRRLF----RVGPVTAKIWWDVGYRTLQEVFDN 194
Query: 315 DSLTHSQRLGLKYF 328
LT + RLG++ F
Sbjct: 195 AQLTSTVRLGIQLF 208
>gi|357419195|ref|YP_004932187.1| PHP domain-containing protein [Thermovirga lienii DSM 17291]
gi|355396661|gb|AER66090.1| PHP domain protein [Thermovirga lienii DSM 17291]
Length = 581
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 141/333 (42%), Gaps = 61/333 (18%)
Query: 210 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 269
+N YR E+ RS + V + F +E GIGK++ + I E+VT G+L
Sbjct: 31 VNAYRRAAENIRSLGRDLSSMVQDGSIFAVE---------GIGKAIGEKITELVTKGRL- 80
Query: 270 KLEHFEK--DEKVRTISLFGEVWGIGPATAQKLYEKGHRT----LDDLKNEDSLTHSQRL 323
E++EK E R++ E+ +GP + ++EK T L++ L
Sbjct: 81 --EYYEKLSQEVPRSLLEILEIPDMGPKRVKAVWEKLKVTTIEELEEAAKSGRLAELPGF 138
Query: 324 GLKYFDDIKTRIP-RHEVEQMERL----------LQKAGEEVLPEVIILCGGSYRRGKAS 372
G K I I R + R+ + K G LP + I GGS+RR K +
Sbjct: 139 GPKSVARILAGIEERKRALETHRIPLVSAWILAEMVKEGLLGLPGLRIEVGGSFRRKKET 198
Query: 373 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 432
GDLD ++ D ++ V++ + +++ L+ G+ + G +
Sbjct: 199 VGDLDFLVSSHDPEA-------AVERFCSLPMVQKVLL------RGSKKASVLFKG--SI 243
Query: 433 PGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 492
G D +V R + L +TG+ N ++R LA KG+ L + F A G
Sbjct: 244 QG-------DLRVIERSRWGTALQYFTGSKEHNVQMRELALKKGFSLSEYS-FKAV--DG 293
Query: 493 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G + + A E+EV+ FLG PW+ P R
Sbjct: 294 GDEILCAE-------EEEVYAFLGLPWILPELR 319
>gi|161520931|ref|YP_001584358.1| phosphotransferase domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189352887|ref|YP_001948514.1| family X DNA polymerase [Burkholderia multivorans ATCC 17616]
gi|160344981|gb|ABX18066.1| PHP domain protein [Burkholderia multivorans ATCC 17616]
gi|189336909|dbj|BAG45978.1| family X DNA polymerase [Burkholderia multivorans ATCC 17616]
Length = 588
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 133/349 (38%), Gaps = 59/349 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVI-----EKLPFKIESADQVKGLPGIGK 253
N +F ++ ++ G + Y+ + +P + ++ +P IG
Sbjct: 5 NAECAAVFAEIADMLEIQGANPFRVRAYRNVARTIADYGHDIPSMLADGGELVRIPSIGP 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 65 DLASKLREIAQTGTCELQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 123
Query: 313 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 357
E H + L L D+ R PR + + LL++ +P
Sbjct: 124 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPVATDVLAPLLERL--HAVPG 181
Query: 358 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
VI + GS RR + + GDLD+++ S F R D + ++
Sbjct: 182 VIEAVAAGSVRRRRETVGDLDILV------------SARDAAAVADAFTRGDAVERVLAK 229
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T S + GL ++D +V D + L+ +TG+ N LR +A++ G
Sbjct: 230 GKTRSSIVLACGL----------QVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAAG 279
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F R + TE V+D +G W+ P R
Sbjct: 280 LKINEYGVF------------RGEERIAGATEASVYDAIGLQWVPPELR 316
>gi|313680568|ref|YP_004058307.1| php domain protein [Oceanithermus profundus DSM 14977]
gi|313153283|gb|ADR37134.1| PHP domain protein [Oceanithermus profundus DSM 14977]
Length = 579
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 144/347 (41%), Gaps = 61/347 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIG 252
N I IF ++ ++ LG+ R +Y A + + IE + + LP IG
Sbjct: 7 NAEIARIFSEIADMLDFLGDSPFRVRAYRSAARYLMDMEEPIERVAEGGEKALDELPYIG 66
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
+ I E + TG++ K E +K + + V G+GP TA+ LY E G +L
Sbjct: 67 HDLAAKILEYLATGRVRKHEELKKQVPPGVLEVM-RVPGVGPKTAKLLYDELGVDSLAAF 125
Query: 312 KNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMERLLQKAGEEVLP 356
K ++L + L L F + K R P EV + R L + E+ LP
Sbjct: 126 K--EALESGRVLELPGFGEKKRARLLHNLELVEAAGRRRPLGEVLWVARALVERLEQ-LP 182
Query: 357 EV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
+V GS RR K + GDLD++ + + +V +F D + + +
Sbjct: 183 QVEHAALAGSARRYKETVGDLDLLAAS---RRGRAVTDAFV------RFPEVDEVLLSGA 233
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
T V GL ++D K+ D + GL +TG+ + LR +A +
Sbjct: 234 SRAT---VFLKTGL----------QVDLKIVEPDAWGSGLQYFTGSKDHSIHLRTMALDR 280
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 522
G ++++ G++ GK TE+EV+ LG PW+ P
Sbjct: 281 GLKINEYGVWKGARRIAGK------------TEEEVYSALGLPWIPP 315
>gi|414153032|ref|ZP_11409359.1| PHP C-terminal domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455414|emb|CCO07261.1| PHP C-terminal domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 569
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 149/350 (42%), Gaps = 62/350 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYY----KAIPVIEKLPFKIESADQVKGLPGIGKS 254
N I IF +L ++ GED Y KA+ +E+ ++ + ++ +PGIGK+
Sbjct: 3 NFEIAWIFSELADLLEIKGEDFFKVRAYRRAAKALARLEQPVQELYRSGKLSQVPGIGKA 62
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY------------- 301
+ I+EI+ TGKL+K + K+ +++ ++ GIG A+ L+
Sbjct: 63 IAAKIKEIIETGKLAKHQELLKEIPAGVLAV-RQLPGIGAGRARALFKELAITDLTELEQ 121
Query: 302 ---EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 356
E+ R+L K E + H + + I+ + R +++ ++ +LP
Sbjct: 122 AAKERKVRSLKGFSAKLESDILHGIEMMRNRQNSIRLSVARELAAELKEFIK-----LLP 176
Query: 357 EVIILC-GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 415
V + GS RR + + GDLD+V+ D + ++ Y ++KE+
Sbjct: 177 GVKAVSEAGSTRRWRDTVGDLDLVVAADDPATVLHAMAAY-PRVKEVV-----------R 224
Query: 416 EEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 475
+E V+T++GL +D +V Y L TG +L+ +A+ +
Sbjct: 225 QESQRMVVNTWWGLA----------VDLQVADPAAYITTLHRNTGCKAHYAKLQEIAQQQ 274
Query: 476 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G L+ GLF +A L E+++++ L ++ P R
Sbjct: 275 GLHLNHRGLFN-----------QAGQHLPIQHEQDIYETLQMTYIPPELR 313
>gi|170701355|ref|ZP_02892317.1| PHP domain protein [Burkholderia ambifaria IOP40-10]
gi|170133740|gb|EDT02106.1| PHP domain protein [Burkholderia ambifaria IOP40-10]
Length = 592
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 142/356 (39%), Gaps = 67/356 (18%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPG 250
P N +F ++ ++ G + R +Y A I +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPAMIANGSDLGQIPS 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 309
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 310 DLKNEDSLTHSQRLG-------LKYFDDIKTRIPRH-------EVEQ-----MERLLQKA 350
L+ E H + L + D I R+ R + Q +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALAGFGAKTEAQLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 351 G-EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
G EV+P GS+RR + + GDLD+++ D + +V + L
Sbjct: 181 GVGEVVP------AGSFRRCRETVGDLDILVSARDPAA---VADAFVSCGDVARVL---- 227
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
H + T S V GL ++D +V D + L+ +TG+ N LR
Sbjct: 228 ---AHGK--TRSSVMLGNGL----------QVDLRVVDADAFGAALVYFTGSKAHNIALR 272
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A++ G ++++ G+F R + TE V++ +G W+ P R
Sbjct: 273 RIAQAGGLKINEYGVF------------RGDERIAGATEASVYEAIGLHWVPPELR 316
>gi|294055403|ref|YP_003549061.1| PHP domain-containing protein [Coraliomargarita akajimensis DSM
45221]
gi|293614736|gb|ADE54891.1| PHP domain protein [Coraliomargarita akajimensis DSM 45221]
Length = 577
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 51/304 (16%)
Query: 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300
++ ++ + GIG ++ D I + TG+L+ + I + E+ G+G +KL
Sbjct: 49 ASGELASVKGIGSALVDKIATLHETGELAYYTDLRESIAPGLIEML-EIPGVGGKKVKKL 107
Query: 301 YEK-GHRTLDDLKNEDSLTHSQRLGLKYF---------DDIKTRIP---RH---EVEQME 344
++ G T++ LK+ + Q LK F I+ R RH E ++
Sbjct: 108 HDALGVETIEALKH--ACEAGQVAALKGFGAKSEAKILTGIENRAAYAKRHLWWEAAEVA 165
Query: 345 RLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKE 401
L+ K G LPEV + GS RR + + GDLD ++ ++ + +K VK++
Sbjct: 166 GLIVK-GLRQLPEVERVEAAGSLRRLRETVGDLDFIVASSAPEAVMEWFTKQGGVKEVTA 224
Query: 402 MKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGN 461
+ + F E G + D +V P + +AF L +TG+
Sbjct: 225 NGLTKSSVRF----ENGLQA--------------------DLRVVPAEQFAFALHHFTGS 260
Query: 462 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 521
N +R A S+GY L + GL T GG + A TS+ TE E+F+FLG P +
Sbjct: 261 KEHNVAMRQRALSRGYSLSEWGL-SETSDKGGAESA-ADTSIT--TEAELFEFLGLPEIP 316
Query: 522 PHER 525
P R
Sbjct: 317 PELR 320
>gi|134095542|ref|YP_001100617.1| DNA polymerase [Herminiimonas arsenicoxydans]
Length = 528
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 61/298 (20%)
Query: 248 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHR 306
LPGIG + I EIVTTG + E + E +I + G+GP + LY E+ +
Sbjct: 11 LPGIGIDLAGKIVEIVTTGTCALREQLHR-ELPSSIHELLNLPGLGPKRVKALYQERNIQ 69
Query: 307 TLDDLKNEDS-----------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE--- 352
TLD L + + QR+ L+ +++ R+ ++ E + AG
Sbjct: 70 TLDQLYSSACNGQIRNVPGFGIRTEQRI-LEAIRAQQSKKKRYRLDLAETI---AGSLLK 125
Query: 353 --EVLPEV-IILCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLRE 407
+ P V I GS+RR + + GDLD++I HPD F++
Sbjct: 126 YFQASPHVRKIDIAGSFRRRQETVGDLDILISSSHPDSVIQH--------------FIKF 171
Query: 408 DLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
+ I ++ T + V G+ ++D +V + L TG+ N
Sbjct: 172 EEIVQVLAQGKTRASVVLRQGM----------QVDLRVVANVSFGAALYYSTGSKAHNIA 221
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+R LA+ +G ++++ G+F G +TE VF +G P++EP R
Sbjct: 222 VRTLAQKRGLKINEYGVFSGAQRIAG------------ETELTVFQSVGLPYIEPELR 267
>gi|221196590|ref|ZP_03569637.1| DNA polymerase IV [Burkholderia multivorans CGD2M]
gi|221203259|ref|ZP_03576278.1| DNA polymerase IV [Burkholderia multivorans CGD2]
gi|221177193|gb|EEE09621.1| DNA polymerase IV [Burkholderia multivorans CGD2]
gi|221183144|gb|EEE15544.1| DNA polymerase IV [Burkholderia multivorans CGD2M]
Length = 588
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 135/349 (38%), Gaps = 59/349 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N +F ++ ++ G + R +Y A I +P + ++ +P IG
Sbjct: 5 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPSMLADGGELVRIPSIGP 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 65 DLASKLREIAQTGTCELQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 123
Query: 313 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 357
E H + L L D+ R PR + + LL++ +P
Sbjct: 124 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPVATDVLAPLLERL--RAVPG 181
Query: 358 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
VI + GS RR + + GDLD+++ S F R D + ++
Sbjct: 182 VIEAVAAGSVRRRRETVGDLDILV------------SARDAAAVADAFTRGDAVERVLAK 229
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T S + GL ++D +V + + L+ +TG+ N LR +A++ G
Sbjct: 230 GKTRSSIVLACGL----------QVDLRVVDAEAFGAALVYFTGSKAHNIALRRIAQAAG 279
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F R + TE V+D +G W+ P R
Sbjct: 280 LKINEYGVF------------RGEERIAGATEASVYDAIGLQWVPPELR 316
>gi|145517945|ref|XP_001444850.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412283|emb|CAK77453.1| unnamed protein product [Paramecium tetraurelia]
Length = 137
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGR 435
+D++I D K+ FL + +L E K L L +E+ +TY G+ +
Sbjct: 1 MDILITRCDGKNADDFLLNLITRL-EGKLLTHHLTMPKRTEQD----CETYMGIGRVSNQ 55
Query: 436 ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 495
+ RID K+YP++ Y ++ +TG+D NR +RL A+ GY L G+ K+
Sbjct: 56 AVHRRIDLKLYPKEQYGCAVLYFTGSDHYNRSMRLWAQKNGYTLQ---------GAHNKK 106
Query: 496 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
+ + + E +V+ LG + P ER++
Sbjct: 107 LWKGEV-IPCEEEMDVYKILGLKYKPPKERSV 137
>gi|15606601|ref|NP_213981.1| DNA polymerase beta family protein [Aquifex aeolicus VF5]
gi|2983818|gb|AAC07374.1| DNA polymerase beta family [Aquifex aeolicus VF5]
Length = 581
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 148/346 (42%), Gaps = 50/346 (14%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKS 254
N+ + +IF ++ +I LGE+ R +Y + +I +L +E A + L PGIG+S
Sbjct: 5 NQELAKIFERMADILEFLGENPYRIRTYRRVANLISELQEDVEKAFYTRKLHHMPGIGES 64
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 313
I+E + TG + K E + + L + G+GP T + YE+ G RT ++
Sbjct: 65 TLLKIEEFLKTGTIKKYEELRRMVPEDLLELL-DAPGVGPKTLKIAYEQLGIRTKEEFIE 123
Query: 314 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-I 359
++ G++ ++ K RI E M + + K E + +
Sbjct: 124 ALKKGKFNKIRGFGPVKALKILRGIELWEKSKERISLIEAYPMAQEVLKYMERIKDKYEN 183
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
I GS RR K + GD+D+++ +++ K + K ++ L + T S
Sbjct: 184 ISIAGSLRRMKETIGDIDILV-SAKKENWKAIHEHFTKYPGLLEVLAKG---ETKSSIIL 239
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
D+G ++D + + L +TG+ N R+R +A+ KG ++
Sbjct: 240 DTG----------------RQVDLRTVEPISWGAALQYFTGSKQHNIRIRDIAKEKGLKV 283
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F V + +TE+ V++ LG W+ P R
Sbjct: 284 NEYGVFK----------VDTEERIAGETEEGVYEVLGMQWIPPELR 319
>gi|323338571|gb|EGA79790.1| Pol4p [Saccharomyces cerevisiae Vin13]
Length = 509
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 49/282 (17%)
Query: 119 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 176
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 177 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 237 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGP 294
F + S ++ L IG S+ IQ I+ TG L L + ++K++ F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAXKIQVILDTGVLPGLNDSVGLEDKLK---YFKNCYGIGS 282
Query: 295 ATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVE 341
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 283 EIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECF 333
Query: 342 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 383
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 334 THLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|149183060|ref|ZP_01861513.1| hypothetical protein BSG1_17740 [Bacillus sp. SG-1]
gi|148849241|gb|EDL63438.1| hypothetical protein BSG1_17740 [Bacillus sp. SG-1]
Length = 573
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 147/343 (42%), Gaps = 50/343 (14%)
Query: 200 KNITEIFGKLINIYRAL-GEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQD 257
KNI ++ + I IY L GE+ S + KA +E + D + GIGK
Sbjct: 6 KNIIKLL-ETIAIYMELKGENTFKVSAFRKAANALETDDRSLNEIDSFTAINGIGKGTAA 64
Query: 258 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLKN--- 313
I+E +T GK S LE +++ + L ++ G+G KLY++ + T ++DLK+
Sbjct: 65 VIEEYITDGKSSVLEELQQEVPDGLVPLL-KLPGLGGKKIAKLYQELNVTNIEDLKDVCE 123
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL-------LQKAGEEVLPEVIILC---- 362
++ G K + I I Q ERL + + EE L ++ +
Sbjct: 124 AGKVSSLSGFGKKTEEKILAAIESAG-SQPERLPIAYMLPVAEKIEEALSKMKGIKEYSR 182
Query: 363 GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSG 422
GS RR + + DLD +I D ++ K + + L ++K S D+
Sbjct: 183 AGSLRRMRETVKDLDFIIAVEDVQAVK----EQIMNLPDIK----------ESSAAGDTK 228
Query: 423 VDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482
+ F E +DF++ + YA L +TG+ N R+R +A+ +G ++ +
Sbjct: 229 ISLIFRY------EWEVSVDFRLVKPEEYATALHHFTGSKDHNVRMRQIAKERGEKISEY 282
Query: 483 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G+ A G F +E+E FD G PW+ P R
Sbjct: 283 GVENAETGEMA----------TFRSEEEFFDHFGLPWIPPELR 315
>gi|431930766|ref|YP_007243812.1| DNA polymerase IV [Thioflavicoccus mobilis 8321]
gi|431829069|gb|AGA90182.1| DNA polymerase IV (family X) [Thioflavicoccus mobilis 8321]
Length = 578
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 141/346 (40%), Gaps = 54/346 (15%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N+ I IF ++ ++ G D R +Y +A +I E L ++ + + LP IG+
Sbjct: 5 NREIAAIFEEIADLLEIEGADAFRVRAYREAARLIPGLAEGLAERVANGADLTELPSIGE 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I IV TG+L +LE + L ++ G+GP + L E G +L DL+
Sbjct: 65 AIAKKIAVIVETGRLPQLEEVRRRVPPSLRELL-QLGGLGPKRVKALREALGVASLADLR 123
Query: 313 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
L G K ++ R+ R + L +A E V P V L G
Sbjct: 124 QAVEAGKVHELPGFGEKTEAQLRERLARWQGPSSRTPLIEAEELVRPLVEHLRGGPGILD 183
Query: 364 ----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
GS+RR + + GDLD+++ D + +F+ D + S T
Sbjct: 184 LAVAGSFRRRRETVGDLDILVACDDGAA------------VAERFVGYDAVAEVLSHGET 231
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+ V G+ ++D +V P + L +TG+ N +R +G ++
Sbjct: 232 RASVRLRSGI----------QVDLRVVPPVSWGAALHYFTGSQSHNVAVRRRGVERGLKI 281
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ G++ R ++ TE+ V+ +G P++ P R
Sbjct: 282 SEYGVY------------RGEEAIAGRTEESVYTAVGLPFIVPELR 315
>gi|403356153|gb|EJY77667.1| DNA polymerase IV (family X) [Oxytricha trifallax]
Length = 678
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 93/446 (20%), Positives = 169/446 (37%), Gaps = 94/446 (21%)
Query: 140 EHFQAESKGDVETNALSEAPNSPMS--------------SESLTNTLSTASASP------ 179
EH + + + D E N S MS ES+T +LST+ P
Sbjct: 254 EHLELKDQKDKENNNQSNQEQKLMSLGMSTEGGTPLKQTRESITQSLSTSKKRPRPDVDE 313
Query: 180 ----------DFSSHHITDPSLLYNPPDLNKN--------------ITEIFGKLINIYRA 215
D T+ Y+P D I ++ KLI+ +
Sbjct: 314 KIDKLGFGRIDKLFFPATNAPSFYDPMDAKSKQFGQQKRLPLNDVIINQLQLKLIHSQKE 373
Query: 216 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK-------L 268
+++++ + KA+ + L + ++ +P K + + ++++ +G L
Sbjct: 374 RDQEQKAQEFQKALDYFQNLKSPVMDMLDLEDIPQFNKEIMNLLKDLTFSGGDYIEDKLL 433
Query: 269 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 328
EHF ++L E G QKL + SQ+ L+ +
Sbjct: 434 DYEEHF--------MALLEETGGDREKMLQKL-----------------SVSQKQLLQNY 468
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEV-------IILCGGSYRRGKASCGDLDVVIM 381
D + I R+E +Q+ ++++ E++ I LCG +Y RG +D+++
Sbjct: 469 KDFEILISRNEAQQVLEIIKQTCLELIDTQEQKENLKIELCG-AYSRGVEKFDLIDILVQ 527
Query: 382 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH-- 439
P ++ FL L E F + +L + +G G + + H
Sbjct: 528 LPQIQNTDMFLMN----LNEKMFDKGNLAMRLDKFRVSATGAQG--GQLAFKIDDQSHAM 581
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 499
R+D YP D + + + +T N +R+ AE KGY L D + G K +
Sbjct: 582 RVDIHCYPEDEFPYAHLYFTSPYDFNLWIRMKAEQKGYALSDCEMLQILDFEGEKLLMPM 641
Query: 500 RTSLKFDTEKEVFDFLGFPWLEPHER 525
+ +K EK++F+ L +LEP +R
Sbjct: 642 KIKVK--EEKDIFETLDLQYLEPEKR 665
>gi|291279404|ref|YP_003496239.1| DNA polymerase family X [Deferribacter desulfuricans SSM1]
gi|290754106|dbj|BAI80483.1| DNA polymerase, family X [Deferribacter desulfuricans SSM1]
Length = 568
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 56/347 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR--RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIG 252
N++I IF + + Y L D + +Y KA +I L F I ++ ++ + G+G
Sbjct: 3 NEHIASIFDEYAD-YLELNNDDPFKVVAYRKAARIIRGLDFDIVEYIQNGGNLEKIKGVG 61
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL------------ 300
K++ I EIV TG L LE K+E + + ++ G+GP A +L
Sbjct: 62 KAIAKKIIEIVNTGSLDSLEKL-KEETPKILIEMTKIPGLGPKKAYRLHRELNINSIGEL 120
Query: 301 -YEKGHRTLDDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 358
Y + LK T L GL+Y+ K + EVE + ++ ++
Sbjct: 121 EYACKENRIKLLKGFGGKTQDMILKGLEYYKKHKGKKLFFEVELIANDFKQTVSKIDGVC 180
Query: 359 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
+ GS RR K D+D++++ + + ++ +R+ F+ E
Sbjct: 181 DVEFAGSLRRKKEIVKDIDLILL--------------IDNVTTLENIRK--YFAESGIEV 224
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
+ G F C + R + +D ++ + + L +TG+ N LR+ A+ KG++
Sbjct: 225 IEFG--DKFIRCLF--RNI--NVDLRIANAENFVTMLHHFTGSKEHNEVLRMKAKEKGFK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F R + +EKE+++ L P++ P R
Sbjct: 279 INEYGIF------------RGAEKINIKSEKEIYELLDLPYIIPELR 313
>gi|288818571|ref|YP_003432919.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus
TK-6]
gi|384129325|ref|YP_005511938.1| PHP domain-containing protein [Hydrogenobacter thermophilus TK-6]
gi|288787971|dbj|BAI69718.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus
TK-6]
gi|308752162|gb|ADO45645.1| PHP domain protein [Hydrogenobacter thermophilus TK-6]
Length = 580
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 151/351 (43%), Gaps = 60/351 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIP-VIEKLPFKIE---SADQVKGLPGIGKS 254
NK I EIF ++ +I LG++ S Y+ + ++ +L +E + ++ +PGIG S
Sbjct: 4 NKEIAEIFERMADILEFLGDNPYRISTYRRVANILSELNVDVEDLVKSGKIHHIPGIGAS 63
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 311
+ I E + TGK+SK E + + L V IGP T + YE+ G RT DD
Sbjct: 64 SVEKILEYLRTGKISKYEELKGKVPEDLLELMN-VPSIGPKTLKLAYERLGIRTKDDFIR 122
Query: 312 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP------EVI-- 359
L G K +I I E + L +A G+E L ++I
Sbjct: 123 AVRSGMLATLPGFGEKKLQNIMRGIELWEKSKERMTLIEAFEIGQEYLSYMKRLGDIIER 182
Query: 360 ILCGGSYRRGKASCGDLDVVI--MHPD-RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
I GS RR K + GD+D+++ MH + K H+ F+S ++K D++
Sbjct: 183 IELAGSLRRRKETVGDIDMLVSAMHENWSKIHEHFVS-----FPDVK----DVLLKG--- 230
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
+T + R+ +D + + L +TG+ N R+R +A+ KG
Sbjct: 231 -------ETKSSVVLKNARQ----VDLRTVEPHQWGAALQYFTGSKEHNIRVRDIAKMKG 279
Query: 477 YRLDDTGLFPATYGS--GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ + G+F A GGK +E+EV+ +G P R
Sbjct: 280 LKVSEYGVFRADTDQWIGGK------------SEEEVYALIGMQTPPPEIR 318
>gi|358393213|gb|EHK42614.1| hypothetical protein TRIATDRAFT_35082, partial [Trichoderma
atroviride IMI 206040]
Length = 110
Score = 61.6 bits (148), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 375
SL +Q++G+KY+ D + RIPR E E + ++ + P ++ SYR+GK GD
Sbjct: 2 SLQRAQQIGVKYYVDFQLRIPRAETEAIANVIFTHARRINPGFQMVIVSSYRQGKLESGD 61
Query: 376 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
++V+I HPD + + + L++ F++ L
Sbjct: 62 VNVIISHPDEAQTLNVVKRLIYILEKSSFIKHTL 95
>gi|448589970|ref|ZP_21650029.1| DNA polymerase IV [Haloferax elongans ATCC BAA-1513]
gi|445735085|gb|ELZ86638.1| DNA polymerase IV [Haloferax elongans ATCC BAA-1513]
Length = 582
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 137/342 (40%), Gaps = 35/342 (10%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 253
N I + + + A G + + SY +A I + P IE D V+ + +G
Sbjct: 4 NDEIATLLEEFADRLDATGVEYKPSSYRRAAENIREHPKPIEDLAAEGEDAVQTIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 313
++ I E TG + +L+ +DE ++ V G+GP T LYE
Sbjct: 64 AISSKIVEYFETGHIEELDDL-RDELPVDMAGLTSVEGVGPKTVGTLYEA---------- 112
Query: 314 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR--GKA 371
LG+ D+++ E+++++ K + +L + + R GKA
Sbjct: 113 ---------LGITDLDELEAAARDGEIQEVKGFGAKTEQNILDGIDFARKSTGRELLGKA 163
Query: 372 -SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYF-GL 429
D + + + + + +++ +E + L+ S H + DS VD G
Sbjct: 164 RPVADDLLAYLSENNAVERAEPAGSMRRWRETVGDIDILVASDHPQSVIDSFVDFELTGD 223
Query: 430 CTYPG------RELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
G R R+D +V D Y L +TG+ N LR +A +G ++++ G
Sbjct: 224 IIEAGEQKASIRVNAMRVDLRVVDPDEYGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYG 283
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+F + S G R + DTE+ ++ L P + P R
Sbjct: 284 MFDISAVSDADDGPRVGERVGGDTEESMYAALDVPLVPPEMR 325
>gi|448579986|ref|ZP_21644815.1| DNA polymerase IV [Haloferax larsenii JCM 13917]
gi|445722659|gb|ELZ74316.1| DNA polymerase IV [Haloferax larsenii JCM 13917]
Length = 582
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 137/346 (39%), Gaps = 43/346 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 253
N I + + ++ A G + + SY +A + + P IE D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLDAKGVEYKPSSYRRAAENVREHPNPIEDLADEGEDAVQTIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E TG + +L+ +DE ++ V G+GP T LYE G LD+L+
Sbjct: 64 AISSKIVEYFETGHIEELDAL-RDELPVDMAGLTSVEGVGPKTVGTLYEALGVTDLDELE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------- 359
+ + + G K +I I LL KA +++L +
Sbjct: 123 AAARDGEIQEVKGFGAKTEQNILDGIDFARESTGRELLGKARPVADDLLASLSENDAVER 182
Query: 360 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
GS RR + + GD+D+++ D +S + +V D + + E
Sbjct: 183 AEPAGSMRRWRETVGDIDILVASDDPQS---VIDSFV-----------DFELAGDTIEAG 228
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
+ R+D +V Y L +TG+ N LR +A +G ++
Sbjct: 229 EQKASIRVNAM---------RVDLRVVDPHEYGAALQYFTGSKDHNVHLRNIAIDRGLKM 279
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F T S G R + DTE+ ++ L P + P R
Sbjct: 280 NEYGMFDITAVSDTDDGPRVGERVAGDTEESMYAALDLPLVPPEMR 325
>gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
Length = 586
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 145/322 (45%), Gaps = 42/322 (13%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
RR+ +A PV + ++ D+ + + G+G ++ I E V TG++ +LE + +
Sbjct: 34 RRAAENIRAHPV--PIGDRVADGDEEILDEIDGVGDAISAKIVEYVETGEIEELEELKAE 91
Query: 278 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 333
+ I+ + G+GP TA KLY E G TLDDL++ Q + G K ++I+
Sbjct: 92 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQEVKGFGPKTEENIRD 150
Query: 334 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 383
I +LL +A ++VL + + C GS RR + + GD+DV++
Sbjct: 151 NIEFAREVGQRQLLGEARPLADDVLAFLESLDAVERCEVAGSIRRWRETIGDVDVLVATN 210
Query: 384 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 443
+ ++ + ++V DS +++ G R R+D
Sbjct: 211 ENET---VVEEFVGW------------------NSVDSEIES--GPAKASVRIGESRVDL 247
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
+V + L +TG+ N RLR A +G ++++ G+F + G +G R +
Sbjct: 248 RVVVPSEFGSALQYFTGSKDHNVRLRNYAIDRGLKVNEYGVFDVSDLDEGDEGQRVGERI 307
Query: 504 KFDTEKEVFDFLGFPWLEPHER 525
+TE +++ LG PW+ P R
Sbjct: 308 AGETEDGMYNALGLPWIPPELR 329
>gi|448284480|ref|ZP_21475740.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
gi|445570815|gb|ELY25374.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
Length = 583
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 145/322 (45%), Gaps = 42/322 (13%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 277
RR+ +A PV + ++ D+ + + G+G ++ I E V TG++ +LE + +
Sbjct: 31 RRAAENIRAHPV--PIGDRVADGDEEILDEIDGVGDAISAKIVEYVETGEIEELEELKAE 88
Query: 278 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 333
+ I+ + G+GP TA KLY E G TLDDL++ Q + G K ++I+
Sbjct: 89 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQEVKGFGPKTEENIRD 147
Query: 334 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 383
I +LL +A ++VL + + C GS RR + + GD+DV++
Sbjct: 148 NIEFAREVGQRQLLGEARPLADDVLAFLESLDAVERCEVAGSIRRWRETIGDVDVLVATN 207
Query: 384 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 443
+ ++ + ++V DS +++ G R R+D
Sbjct: 208 ENET---VVEEFVGW------------------NSVDSEIES--GPAKASVRIGESRVDL 244
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
+V + L +TG+ N RLR A +G ++++ G+F + G +G R +
Sbjct: 245 RVVVPSEFGSALQYFTGSKDHNVRLRNYAIDRGLKVNEYGVFDVSDLDEGDEGQRVGERI 304
Query: 504 KFDTEKEVFDFLGFPWLEPHER 525
+TE +++ LG PW+ P R
Sbjct: 305 AGETEDGMYNALGLPWIPPELR 326
>gi|432957964|ref|XP_004085949.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like, partial
[Oryzias latipes]
Length = 166
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 369 GKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEEGTDSG 422
GK S D+D +I HP+ +G + K V L+ F+ R + S S
Sbjct: 1 GKPSGHDVDFLITHPEEGREEGLMPKVVSWLEAEGFILYQKTTRNSYLESKDGPGRPPSN 60
Query: 423 VDTY---------FGLCTYPGRELRH-RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA 472
+D + G P R R R+D V P +AF L+ WTG+ + R LR A
Sbjct: 61 MDRFERCLSIFKLPGAAETPQRAWRAVRVDLVVSPISQFAFALLGWTGSKLFERELRRWA 120
Query: 473 -ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
+G L L+ KQG R + +E+E+F LG ++ P ERN
Sbjct: 121 GHERGMSLSSHALY------DNKQGAYLRAA----SEEEIFAHLGLEFVPPSERN 165
>gi|390959340|ref|YP_006423097.1| DNA polymerase IV [Terriglobus roseus DSM 18391]
gi|390414258|gb|AFL89762.1| DNA polymerase IV (family X) [Terriglobus roseus DSM 18391]
Length = 584
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 127/325 (39%), Gaps = 46/325 (14%)
Query: 221 RSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
R SY +A +E+ L ++ Q+ + GIGK M +I ++ TG + +
Sbjct: 21 RVRSYRRAAEAVEQQTTPLASLVDDPKQLLAIAGIGKGMAANIVDLERTGSMPLRDELLT 80
Query: 277 DEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 332
+ + L + +GP T L+ + L+ E L R G K D +
Sbjct: 81 KYRPSMLDLL-RLPSMGPKTVALLFSALQIENMDQLETAAKEGHLAKLPRFGQKQVDKLL 139
Query: 333 TRIPRHEVEQMERLLQKAGEEV---------LPEV-IILCGGSYRRGKASCGDLDVVIMH 382
I H + AGE P + I GS RRG+ + GDLD+++
Sbjct: 140 KGIEDHRRNSGRFRIDNAGETADKIAAMLREFPGIETITPAGSLRRGRETVGDLDLLVTG 199
Query: 383 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRH--R 440
P +S V+ + + + D++ + + + + LR+ +
Sbjct: 200 P--ACEADVVSAAVEYVATLPLI--DVLLAKGQNKVSFT---------------LRNGLQ 240
Query: 441 IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 500
+D ++ PR Y L +TG+ + N LR A +GY L + L G V A
Sbjct: 241 VDVRLLPRASYGAALQYFTGSKMHNVSLRQKALKRGYTLSEYALARLNPEEGESSIVAAA 300
Query: 501 TSLKFDTEKEVFDFLGFPWLEPHER 525
TE+E++ LG W+ P R
Sbjct: 301 ------TEEEIYAALGMQWIAPELR 319
>gi|298674967|ref|YP_003726717.1| PHP domain-containing protein [Methanohalobium evestigatum Z-7303]
gi|298287955|gb|ADI73921.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
Length = 573
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 123/298 (41%), Gaps = 49/298 (16%)
Query: 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302
D++ +PG+GKS ++ I +I+ TG S+ E ++ V L + G+GP Q LY+
Sbjct: 51 DRLDSIPGVGKSFKNKIVDILNTGTFSEYEKIRQEIPVNIEELMA-IPGMGPRITQFLYK 109
Query: 303 K-GHRTLDDLKNEDSLTHSQR----LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--- 354
+ G RT+DDLK E + TH R +G + I I R+E +R+L + +V
Sbjct: 110 RLGIRTIDDLK-EAARTHRIRRLPNMGAIKEERILNAIKRYEKRGADRILLETARQVADD 168
Query: 355 -------LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 407
+P + GS RR K + ++++++ + + +K ++
Sbjct: 169 IKSILETIPYTKVSVVGSVRRQKETVNNINLIVT-------TDYPKDVINCFTRIKGVQT 221
Query: 408 DLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR 467
L + D + + G +D ++ D + I TG+ N
Sbjct: 222 IL-----------NKADKWVSIIYNGGIP----VDLQIVDDDYFGPTQIHLTGSKKHNIH 266
Query: 468 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L+ +A S L GL G+ L TE +++ +G ++ P R
Sbjct: 267 LQQIASSMNLHLSKFGLINLEDGN----------KLTSKTENDIYQKMGLDYIPPELR 314
>gi|406899026|gb|EKD42415.1| hypothetical protein ACD_73C00166G0001, partial [uncultured
bacterium]
Length = 507
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 136/319 (42%), Gaps = 52/319 (16%)
Query: 224 SYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
+Y KA V+E+ IE ++ L GIG+++ + I ++V TGKL E + +
Sbjct: 29 AYEKAARVLEQESRDIEELVERGELSALAGIGETLNEKITQLVKTGKLKFYEDLKAEIPE 88
Query: 281 RTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIP 336
I L E+ GIGP A+ L Y+ G +++ +L+ E+ L + G K D+I I
Sbjct: 89 GLIQL-NELPGIGPKKARHLFYDLGLQSIGELEYACQENRLLKLKSFGEKTQDNILKAIK 147
Query: 337 RHEVEQMERL----LQKAGEEV------LPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 386
++ L L +A E V +P + I GS RR K + GD+D+V+
Sbjct: 148 FYKKSHKRFLIPVALAQAQEFVDYLKAKIPHLKIEIAGSLRRKKETIGDIDLVV--ATEN 205
Query: 387 SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVY 446
HK + +V + + L T S SG+ ++D +
Sbjct: 206 PHK-VMDAFVGYEQSAEILAHG---DTKSALRLKSGI----------------QVDIRCV 245
Query: 447 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 506
Y F L TG+ N LR A++ G +L++ GLF + +
Sbjct: 246 SAVEYPFALHHLTGSKEHNVALRQQAQALGLKLNEYGLF------------KDEKLIPCK 293
Query: 507 TEKEVFDFLGFPWLEPHER 525
E+E++ LG ++ P R
Sbjct: 294 IEEEIYHVLGLSYVPPELR 312
>gi|448604353|ref|ZP_21657605.1| DNA polymerase X [Haloferax sulfurifontis ATCC BAA-897]
gi|445744513|gb|ELZ95989.1| DNA polymerase X [Haloferax sulfurifontis ATCC BAA-897]
Length = 582
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 138/347 (39%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAEEGEDAVQEIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG++ +L ++ V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELAELREELPVDMAGLTS-VEGVGPKTVGKLYEALGVADLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
E + + G K +I I LL +A V +++ G
Sbjct: 123 AAAREGKIQEVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAHLGDHDAVG 181
Query: 364 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D + +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAAAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 DQKASVRVNGM----------RVDLRVVDPAEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G RA T + DTE+ ++ L P + P R
Sbjct: 279 MNEYGMFDISDVEDPDDGPRAGTRVAGDTEESMYAALDLPLVPPEMR 325
>gi|406909441|gb|EKD49692.1| hypothetical protein ACD_63C00070G0010 [uncultured bacterium]
Length = 580
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 58/351 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIESADQVKG------LPGI 251
N + ++IF ++ I G + S Y+ A IE + +E + KG L GI
Sbjct: 3 NSDFSKIFSEISRILELRGTNNFKVSAYRNAGREIEHMAEDLEDIYKEKGVNGLVNLTGI 62
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL-FGEVWGIGPATAQKLY-EKGHRTLD 309
G+S+ + I+E++ TGK E+ +K K+ + L V GIG TA+KLY E R+L
Sbjct: 63 GESIAEKIEELIKTGKCKYYENLKK--KIPKVELEMLNVPGIGAKTARKLYKELNLRSLS 120
Query: 310 DLKNEDSLTHSQRL-GLKYFDD---IKTRIPRHEVEQMERLLQKAGEEVLPEVI------ 359
DL+ + + L G + + +++ E +++ R L E + +V+
Sbjct: 121 DLEEKAKAGKVRELEGFRARTEENILQSLKSLRERKKITRYLLTFAEPIAQDVLKYLKKC 180
Query: 360 -----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
GS RR K + GD+D+++ + + KY K K +
Sbjct: 181 KDVKKCDVVGSLRRMKETVGDIDLIVGSSNPEKVIEHFVKYPNKKKVIL----------- 229
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+G G + + +ID +V P Y L +TG+ N LR A+
Sbjct: 230 --KGDTKGAILHKEIV---------QIDLEVLPMKNYGSLLQHFTGSKEHNVHLRTWAKK 278
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+GY + + G+ +ART F E++ + + G + P R
Sbjct: 279 EGYSISEYGVIKG----------KARTHKLFSDEQDFYKYFGMQNIPPELR 319
>gi|383766497|ref|YP_005445478.1| putative DNA polymerase/3'-5' exonuclease [Phycisphaera mikurensis
NBRC 102666]
gi|381386765|dbj|BAM03581.1| putative DNA polymerase/3'-5' exonuclease [Phycisphaera mikurensis
NBRC 102666]
Length = 597
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 136/356 (38%), Gaps = 52/356 (14%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES--ADQVKGLPGIG 252
P N ++T +F + + LG + + ++ KA V+E L S ++ LPG+G
Sbjct: 2 PSTNASLTAVFEDMARLTEVLGGNGFKVNAFVKAARVVEALERDAASFSRSELVALPGVG 61
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 311
D I E V +G ++ E ++ ++L G + GIGP +A + + + ++DDL
Sbjct: 62 TGTADRILEFVESGAVADHEDLKERVPAGVVALMG-ISGIGPKSAARFWHEAEVESIDDL 120
Query: 312 K---NEDSLTHSQRLGLKYFDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEVI-- 359
K ++ L + G K D I + RH L E V
Sbjct: 121 KAAIDDGRLAALKGFGQKKIDGIAKSLAFAERFGDRHRRGVAAALAGAVAEAVAGVEGVR 180
Query: 360 -ILCGGSYRRGKASCGDLDVVIM---------HPDRKSHKGFLSKYVKKLKEMKFLREDL 409
+ GS RRG + GD+DV+ P G + ++++ + E L
Sbjct: 181 RVEAAGSLRRGAETIGDVDVLAAVPGPGPSAEDPTPAPDPGVTAAVFDAVEKLDGVEEVL 240
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+ D+ + FG + D + P + L +TG+ N LR
Sbjct: 241 VRG-------DTKLSVRFGAGL--------QADVRAVPAACFGAALAYFTGSKEHNVALR 285
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
A +G L + L T GG A TE E+ LG ++ P R
Sbjct: 286 ERAGKRGMSLSEYAL---TDKRGGAVVASA-------TEAEIHGALGLAFVPPELR 331
>gi|172063147|ref|YP_001810798.1| phosphotransferase domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|171995664|gb|ACB66582.1| PHP domain protein [Burkholderia ambifaria MC40-6]
Length = 592
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 138/356 (38%), Gaps = 67/356 (18%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEK----LPFKIESADQVKGLPG 250
P N +F ++ ++ G + R +Y A I + +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIAEYGRDIPAMIANGSDLSQIPS 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 309
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 310 DLKNEDSLTHSQRL---GLK----YFDDIKTRIPRHEVE------------QMERLLQKA 350
L+ E H + L G K D I R+ R +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALPGFGAKTEAHLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 351 G-EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
G E +P GS+RR + + GDLD+++ S F+
Sbjct: 181 GVGEAVP------AGSFRRCRETVGDLDILV------------SAQDAAAVADAFVSCGD 222
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+ + T S V GL ++D +V D + L+ +TG+ N LR
Sbjct: 223 VVRVLANGKTRSSVMFGNGL----------QVDLRVVDADAFGAALVYFTGSKAHNIALR 272
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A++ G ++++ G+F R + TE V++ +G W+ P R
Sbjct: 273 RIAQAGGLKINEYGVF------------RGDERIAGATEASVYEAIGLRWVPPELR 316
>gi|221215212|ref|ZP_03588178.1| DNA polymerase IV [Burkholderia multivorans CGD1]
gi|221164896|gb|EED97376.1| DNA polymerase IV [Burkholderia multivorans CGD1]
Length = 588
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 134/349 (38%), Gaps = 59/349 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N +F ++ ++ G + R +Y A I +P + ++ +P IG
Sbjct: 5 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPSMLADGGELVRIPSIGP 64
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 65 DLASKLREIAQTGTCELQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 123
Query: 313 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 357
E H + L L D+ R PR + + LL++ +P
Sbjct: 124 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPVATDVLAPLLERL--RAVPG 181
Query: 358 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
VI + GS RR + + GDLD+++ S F R D + ++
Sbjct: 182 VIEAVAAGSVRRRRETVGDLDILV------------SARDAAAVADAFTRGDAVERVLAK 229
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T S + GL ++D +V + + L+ +TG+ N LR A++ G
Sbjct: 230 GKTRSSIVLACGL----------QVDLRVVDAEAFGAALVYFTGSKAHNIALRRTAQAAG 279
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F R + TE V+D +G W+ P R
Sbjct: 280 LKINEYGVF------------RGEERIAGATEASVYDAIGLQWVPPELR 316
>gi|386393892|ref|ZP_10078673.1| DNA polymerase IV (family X) [Desulfovibrio sp. U5L]
gi|385734770|gb|EIG54968.1| DNA polymerase IV (family X) [Desulfovibrio sp. U5L]
Length = 574
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 142/355 (40%), Gaps = 70/355 (19%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 251
N +I IF ++ ++ G + R +Y A + L + AD V +PG+
Sbjct: 5 NSDIARIFDEVADLLEIEGANPFRVRAYRNAAQTVASLGEAV--ADMVAAGRDLTEIPGV 62
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD 310
G+ + ++ IV TGKL L RT+ V G+GP L++ G L+
Sbjct: 63 GQDLAGKMEVIVGTGKLPLLAEL-AGRTPRTLEGLLAVPGLGPKRVAALHKALGITDLEG 121
Query: 311 LKNEDSLTHSQRL---GLKYFDDIKTRIPRHE---------VEQME--------RLLQKA 350
L+ + Q L G K +I T + R + Q E L + A
Sbjct: 122 LRQAAAAGRLQALPGFGAKAEANILTALDRKSKSGDTGRFTLAQAEPQAEALRAHLARSA 181
Query: 351 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI 410
G E ++ GSYRR + + GDLD+++ G V K F R +
Sbjct: 182 GVER-----VVVAGSYRRRRETVGDLDLLV--------TGAADSPVLK----DFTRFPDV 224
Query: 411 FSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
++ T + V GL ++D ++ PR+ Y L +TG+ N +R
Sbjct: 225 RQVTAKGPTRAAVILRTGL----------QVDARLVPRESYGAALHYFTGSKAHNLAVRN 274
Query: 471 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L KG ++++ G+F G+ TE+E++ +G ++EP R
Sbjct: 275 LGIDKGLKVNEYGVFRGGDRVAGR------------TEEEIYALMGLGYVEPELR 317
>gi|365158084|ref|ZP_09354325.1| histidinol phosphate phosphatase HisJ family protein [Bacillus
smithii 7_3_47FAA]
gi|363621913|gb|EHL73095.1| histidinol phosphate phosphatase HisJ family protein [Bacillus
smithii 7_3_47FAA]
Length = 571
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 132/332 (39%), Gaps = 47/332 (14%)
Query: 210 INIYRAL-GEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 267
I IY L GE+ S + KA +EK + +PGIGK+ I+E + TG
Sbjct: 15 IAIYMELKGENSFKVSAFRKAAAALEKDERGLNEIKDFTSIPGIGKATSSVIEEFIETGT 74
Query: 268 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL--- 323
S LE +++ I L ++ G+G KLY E G ++LK Q L
Sbjct: 75 SSVLEQLQQEVPKGLIPLL-QIPGLGGKKISKLYQELGITNAEELKAACEKGEVQNLPGF 133
Query: 324 ----------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 373
+K D R+P + ++ ++K + + GS RR +
Sbjct: 134 GKKTEEKILAAIKQVGDRPERLPIWHMLELCEHIEKNLANIDGILQFARAGSIRRLREMV 193
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
DLD +I D + K L + ++E + + ++ +G+
Sbjct: 194 KDLDFIIAAADPQ-------KVADALIHLPGIKE---VTAAGKTKVSVVLEDSYGVS--- 240
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
+DF++ + +A L +TG+ N R+R LA+ +G R+ + G+ G
Sbjct: 241 -------VDFRIVEPEQFATALHHFTGSKDHNVRMRQLAKQRGERISEYGIENKETGE-- 291
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+ F TE++ + G PW+ P R
Sbjct: 292 --------IVTFSTEEDFYRHFGLPWIPPEIR 315
>gi|20067719|emb|CAD29100.1| chimeric DNA-directed DNA polymerase xf5-3a [synthetic construct]
Length = 191
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 33/203 (16%)
Query: 329 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 388
+D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P++K
Sbjct: 16 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYI---AGSLRREEKMLNDVDLLIIVPEKK-- 70
Query: 389 KGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPG----RELRH-RIDF 443
L K+V ++F+ + L G + G+C P E H RID
Sbjct: 71 ---LLKHVLPNIRIRFITDTL----------SKGETKFMGVCQLPSENDENEYPHRRIDI 117
Query: 444 KVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 503
++ YA + +TG ++ +R+ A KG+ +++ + P G GV A L
Sbjct: 118 RLAEEKPYA--IFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPL 167
Query: 504 KFDTEKEVFDFLGFPWLEPHERN 526
D+E+++FD++ + + EP +R+
Sbjct: 168 PVDSEQDIFDYIQWRYREPKDRS 190
>gi|115358392|ref|YP_775530.1| phosphotransferase domain-containing protein [Burkholderia
ambifaria AMMD]
gi|115283680|gb|ABI89196.1| PHP C-terminal domain protein [Burkholderia ambifaria AMMD]
Length = 592
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 138/356 (38%), Gaps = 67/356 (18%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEK----LPFKIESADQVKGLPG 250
P N +F ++ ++ G + R +Y A I + +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIAEYGRDIPAMIANGSDLGQIPS 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 309
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 310 DLKNEDSLTHSQRL---GLK----YFDDIKTRIPRHEVE------------QMERLLQKA 350
L+ E H + L G K D I R+ R +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALPGFGAKTEAHLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 351 G-EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
G E +P GS+RR + + GDLD+++ S F+
Sbjct: 181 GVGEAVP------AGSFRRCRETVGDLDILV------------SAQDAAAVADAFVSCGD 222
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+ + T S V GL ++D +V D + L+ +TG+ N LR
Sbjct: 223 VARVLANGKTRSSVMLGNGL----------QVDLRVVDADAFGAALVYFTGSKAHNIALR 272
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A++ G ++++ G+F R + TE V++ +G W+ P R
Sbjct: 273 RIAQAGGLKINEYGVF------------RGDERIAGATEASVYEAIGLHWVPPELR 316
>gi|309782694|ref|ZP_07677415.1| cell division topological specificity factor MinE [Ralstonia sp.
5_7_47FAA]
gi|308918472|gb|EFP64148.1| cell division topological specificity factor MinE [Ralstonia sp.
5_7_47FAA]
Length = 580
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 137/349 (39%), Gaps = 60/349 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIES----ADQVKGLPGI 251
N+ I IF ++ N+ E+ F +Y A ++E L +++ + LPG+
Sbjct: 10 NQAIAAIFNEIANLLEI--EEANPFRVRAYRNAARMVEGLTEGVDAMLARGADLTALPGV 67
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
G + ++EIV TG + L + + L +E G +LD+L
Sbjct: 68 GVDLAAKMREIVETGSCAMLTRVRTEVPAYVLQLLQLPGLGPRRARALQHELGITSLDEL 127
Query: 312 KNEDSLTHSQRL-GL------KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG- 363
+ + L G + + + R+ R + + K + L ++ G
Sbjct: 128 ARAAAAHRIRELHGFGARSEQRLLEALNARLTRDRRYGLA--IAKPCADALTHYLLASGL 185
Query: 364 -------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
GSYRRG+ + GDLD++I R L Y + + + S
Sbjct: 186 VDQLVVAGSYRRGRDTVGDLDLLITGRKRAQIVEHLVHY------------NEVATRISA 233
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T + V G+ ++D +V D + L+ +TG+ N LR LA+++G
Sbjct: 234 GPTRASVVLKNGM----------QVDLRVVRPDAFGAALVYFTGSKPHNIALRKLAQAQG 283
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F R + + TE V+ +G PW+ P R
Sbjct: 284 LKINEYGVF------------RGKERIAGQTEASVYRAVGLPWICPELR 320
>gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
Length = 593
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 146/355 (41%), Gaps = 67/355 (18%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGI 251
P LN ++ +IF ++ ++ E+ R +Y A I F+ + Q LPGI
Sbjct: 2 PILNSDVAKIFEEIADLLEINDENPFRIRAYRSAARTIRNFKFQFHTLIGQGQFPKLPGI 61
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDD 310
G+ +++ ++EI+ TG+ LE ++ L + G+GP Q+L + G ++
Sbjct: 62 GQDLEEKVREIIATGRCLLLEALRRNFPPHFNDLLA-IPGLGPKRVQRLNHALGISSIKQ 120
Query: 311 LKNEDSLTHSQR----LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC---- 362
L+ E ++ R G K I + I V + Q V+P+ L
Sbjct: 121 LR-EAAIAGKVRDIPGFGPKTEQSILSAIAVQAVHSGGFIRQT----VMPQATALASYLS 175
Query: 363 ----------GGSYRRGKASCGDLDVVIMHPDR-KSHKGFLSKYVKKLKEMKF-LREDLI 410
GS RR K GD+D++ D + + FLS K+ M+ +R +I
Sbjct: 176 ESTHIDRIAIAGSCRRLKDVVGDIDLLATGSDSGELMERFLSYGDVKVVLMRGPIRGSVI 235
Query: 411 FSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRL 470
SG+ ++D + P + Y L +TG+ N LR
Sbjct: 236 LG--------SGI----------------QVDLRFVPPESYGAALHYFTGSKPHNIALRQ 271
Query: 471 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A ++ +L++ GLF K G R + DTE V+ LG P++ P R
Sbjct: 272 IALAQKMKLNEYGLF--------KDGKR----IAGDTEISVYQALGLPFIPPELR 314
>gi|397779792|ref|YP_006544265.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
gi|396938294|emb|CCJ35549.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
Length = 577
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 136/342 (39%), Gaps = 46/342 (13%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 255
N + + ++ ++ G + +Y +A IE LP I ++ +PG+GK +
Sbjct: 9 NIEVAAVLYEVADLLEIKGVRFKPHAYRRAAQAIETLPEDIADVAREGRLGEIPGVGKGI 68
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 314
+ E+V TG L LE ++E + + GIGP A L E G RT+DDL+
Sbjct: 69 AGKVMEVVETGSLGYLESL-REELPEGVQELTRIEGIGPKKALVLSRELGIRTIDDLEAA 127
Query: 315 DSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 371
+ + L G K +I I QM R+ AG+ L I+ R +
Sbjct: 128 ATAGRIRDLPGFGEKTEQNILAGI------QMSRM---AGKRHLLGYILPTARVIERRLS 178
Query: 372 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----GTDSGVDTY 426
S G + V L+ +++ KE + L ST EE T GV
Sbjct: 179 SLGSVGQV-----------SLAGSIRRRKETIGDLDLLATSTRPEEVMEVFATLPGVSRV 227
Query: 427 FGLCTYPGR---ELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 483
T E ++D +V Y L +TG+ N LR LA ++ +RL++ G
Sbjct: 228 LARGTTKTSVVLETGLQVDLRVVEEKHYGAALQYFTGSKEHNIALRKLAIARNWRLNEYG 287
Query: 484 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
L G + + E V+ LG W+EP R
Sbjct: 288 LVDLADGR----------MIAGEDEAGVYRALGLSWIEPELR 319
>gi|404397391|ref|ZP_10989182.1| hypothetical protein HMPREF0989_02834 [Ralstonia sp. 5_2_56FAA]
gi|348614002|gb|EGY63565.1| hypothetical protein HMPREF0989_02834 [Ralstonia sp. 5_2_56FAA]
Length = 582
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 137/349 (39%), Gaps = 60/349 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIES----ADQVKGLPGI 251
N+ I IF ++ N+ E+ F +Y A ++E L +++ + LPG+
Sbjct: 12 NQAIAAIFNEIANLLEI--EEANPFRVRAYRNAARMVEGLTEGVDAMLARGADLTALPGV 69
Query: 252 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311
G + ++EIV TG + L + + L +E G +LD+L
Sbjct: 70 GVDLAAKMREIVETGSCAMLTRVRTEVPAYVLQLLQLPGLGPRRARALQHELGITSLDEL 129
Query: 312 KNEDSLTHSQRL-GL------KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG- 363
+ + L G + + + R+ R + + K + L ++ G
Sbjct: 130 ARAAAAHRIRELHGFGARSEQRLLEALNARLTRDRRYGLA--IAKPCADALTHYLLASGL 187
Query: 364 -------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416
GSYRRG+ + GDLD++I R L Y + + + S
Sbjct: 188 VDQLVVAGSYRRGRDTVGDLDLLITGRKRAQIVEHLVHY------------NEVATRISA 235
Query: 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 476
T + V G+ ++D +V D + L+ +TG+ N LR LA+++G
Sbjct: 236 GPTRASVVLKNGM----------QVDLRVVRPDAFGAALVYFTGSKPHNIALRKLAQAQG 285
Query: 477 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++++ G+F R + + TE V+ +G PW+ P R
Sbjct: 286 LKINEYGVF------------RGKERIAGQTEASVYRAVGLPWICPELR 322
>gi|323456852|gb|EGB12718.1| hypothetical protein AURANDRAFT_18595 [Aureococcus anophagefferens]
Length = 155
Score = 60.1 bits (144), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 440 RIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA-----TYGSGGK 494
RID KVY YA L+ +TG+D NR +R A++KG+ L D GL P S GK
Sbjct: 13 RIDVKVYAPQHYACALLYFTGSDHFNRSMRCFAKAKGFTLCDRGLRPTVRRGKATDSRGK 72
Query: 495 ---QGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527
V ++F+ E++VF FL P+ P ER L
Sbjct: 73 YVDNKVAVGRPVEFEREEDVFAFLELPYKTPPERAL 108
>gi|271967572|ref|YP_003341768.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
gi|270510747|gb|ACZ89025.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
Length = 560
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 135/318 (42%), Gaps = 52/318 (16%)
Query: 217 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 276
G+ R SY KA I P I +A V+ +PG+G+++ ++E + G +L+ +
Sbjct: 24 GDAFRVRSYQKAAKAIAGFPEDI-AATAVRSVPGVGEAIAKKVEEYLERGSFRQLDDL-R 81
Query: 277 DEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 335
+ + + +GP A L+ E G + + L +++ + GLK F
Sbjct: 82 GKVPGGVRRLTRIASLGPKKAVFLFQELGIDSPEALA--EAIGQGRLKGLKGFGPKTEEN 139
Query: 336 PRHEVEQMERLLQKAGEEV---LPEVIILC--------GGSYRRGKASCGDLDVVIMHPD 384
+EQ+ER + V L E II GS RR K + GD+D++ + P
Sbjct: 140 LLRGIEQLERTSARVHTGVAMDLAERIIASLSAERIAYAGSLRRMKDTIGDIDILAVGP- 198
Query: 385 RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFK 444
+ + K ++ E +I S + + + T G+ ++D +
Sbjct: 199 --------ASLMDDFKSRPYVAE-VIASGEKK----TSIRTTEGI----------QVDLR 235
Query: 445 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 504
V P + + + +TG+ N LR + KG++L + GLF G R +
Sbjct: 236 VVPAESWGAAMQYFTGSKEHNVHLREITVKKGWKLSEYGLF---------DGDRV---IA 283
Query: 505 FDTEKEVFDFLGFPWLEP 522
+ E++++ LG PW+ P
Sbjct: 284 AEREEDIYQALGMPWIPP 301
>gi|167584773|ref|ZP_02377161.1| DNA polymerase IV (family X) [Burkholderia ubonensis Bu]
Length = 602
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 136/351 (38%), Gaps = 63/351 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 253
N +F ++ ++ G + R +Y A I +P + D + +P IG
Sbjct: 19 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPTMVAHGDDLGRIPSIGA 78
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 312
+ ++EI TG + + L +V G+G + L+E H TL++LK
Sbjct: 79 DLASKLREIAATGTCELQQTLRHALPAAIVELL-DVPGLGAKRVKALHEGLHVDTLEELK 137
Query: 313 NEDSLTHSQRL---GLK----YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ 359
+ L G K + I TR+ + +R L E+ L ++
Sbjct: 138 AAAKTGRVRELPGFGAKSEAHLLEAIDTRLDHAQ----QRFLLPFAEQCLTPLLERLRAV 193
Query: 360 -----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 414
+ GS+RR + + GDLD+++ D + Y + + +
Sbjct: 194 PGVGDTVPAGSFRRRRETVGDLDILVTASDPAAVTDAFVGYAEVERVL------------ 241
Query: 415 SEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAES 474
+ T S V + G+ ++D +V D + L+ +TG+ N LR +A++
Sbjct: 242 ASGATRSSVVLHSGI----------QVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQA 291
Query: 475 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G ++++ G+F R + TE V++ +G W+ P R
Sbjct: 292 GGLKINEYGVF------------RDDERIAGATEASVYESIGLRWVPPELR 330
>gi|222054249|ref|YP_002536611.1| PHP domain-containing protein [Geobacter daltonii FRC-32]
gi|221563538|gb|ACM19510.1| PHP domain protein [Geobacter daltonii FRC-32]
Length = 579
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 146/358 (40%), Gaps = 77/358 (21%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE--SADQVKGLPGIGKSM 255
N I IF ++ +I G D +Y +A +E L I+ S ++ +PGIGK
Sbjct: 3 NHEIARIFSEIADIQEFRGYDIFKIRAYRRAALNLEGLSQAIDNLSHKELLKIPGIGKDF 62
Query: 256 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 314
I+E + TGK+ E +++ + + L + G+GPA A+ LY+K G + +DDL+
Sbjct: 63 AAKIEEYLATGKIEAHEKLKEEVPLGMLELL-VIPGLGPAKAKLLYDKLGVKGMDDLERA 121
Query: 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ-----KAGEEVLPEVIIL-------- 361
+ RL IP+ + + E +L+ K G E P +L
Sbjct: 122 AA---EHRLA--------GAIPKIQSKTEENILKGIEMVKRGRERFPLGRVLPLADSLVD 170
Query: 362 ------C------GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
C GS RR K + D+D+V D + + + + + L L
Sbjct: 171 SLRKQGCVERIELAGSIRRWKETVKDIDIVATASDPAA---LMIAFTTLPQVTRLL---L 224
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
T S G+ ++D +V R + L TG+ N RLR
Sbjct: 225 KGPTRSSVLVTDGI----------------QVDLRVVERGSFGAALAYLTGSKNHNVRLR 268
Query: 470 LLAESKGYRLDDTGLFPATYGS--GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A +G ++++ G+F S GG + E++V+ +G P++ P R
Sbjct: 269 DMAVRQGLKINEYGIFRTEDDSRIGGAE------------EEDVYRVVGLPFIPPELR 314
>gi|303280479|ref|XP_003059532.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459368|gb|EEH56664.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 701
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 103/247 (41%), Gaps = 58/247 (23%)
Query: 292 IGPATAQKLYEKGHRTLDDLKN--EDS-------LTHSQRLGLKYFDDIKTRIPRHEVEQ 342
IG TA+ L G RTL++L+ ED L QR +++ D++ + +P + E+
Sbjct: 383 IGRNTARGLLRCGVRTLEELRRRLEDGDQAVSSQLDGRQRYAIRHADELTSPVPIEDFEE 442
Query: 343 MERLLQKAG----------EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS---HK 389
M + KA ++ EVI + GG RR +AS D D ++ HP ++ +
Sbjct: 443 MRSAVLKAAKNSRRMGSKEDDDAWEVIAVGGG--RRNEAS-HDADFLLTHPKLRTPWEMR 499
Query: 390 GFLSKYVKKL----------KEMKF---LREDLIFSTHSE-------------EGTDSGV 423
G L K ++ + KE F + D + E EG G
Sbjct: 500 GLLDKILEGMPEVLGEHGDDKEAAFAFRMVTDGVMGNFWEKVSNAKRDLGKQHEGKSRGN 559
Query: 424 DTYFG-----LCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
Y+ T GR RID + P D F LI WTG+ NR +R A S+G
Sbjct: 560 ADYYDKIYGVFRTAAGRH--RRIDIVLVPHDQLPFALIGWTGSKQYNRFIRHHANSRGLY 617
Query: 479 LDDTGLF 485
+ GLF
Sbjct: 618 FNSHGLF 624
>gi|302391193|ref|YP_003827013.1| PHP domain-containing protein [Acetohalobium arabaticum DSM 5501]
gi|302203270|gb|ADL11948.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
Length = 571
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 60/324 (18%)
Query: 224 SYYKAIPVIEKLPFKIE---SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 280
SYY I+ L I+ + ++++ + GIG+S+ I EI+ TG SK + +++ +
Sbjct: 29 SYYNVSKRIKNLETNIKKLVANNRLQDIEGIGESLAVTIDEILQTGTCSKYKELKEEIPI 88
Query: 281 RTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLG-------LKYFDDIK 332
+ + ++ G+GP + Y E G LD+LK ++L LK D I
Sbjct: 89 GLLEIL-DLPGVGPKKVKLFYDELGITDLDELKKAAKKQKLRKLSGIGAKTELKILDAIM 147
Query: 333 TRIPRHEVEQMERLLQKAGEEVLPEVIILCG-----------GSYRRGKASCGDLDVVIM 381
R++ +++ L A E E++ +C G RR K DLD++++
Sbjct: 148 KAKNRND--KIDLGLATALAE---ELLDICAKLKSVTKVEVVGGLRRKKELISDLDLLVV 202
Query: 382 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRI 441
+ K +++ + +D+ T TD ++ L + PG + I
Sbjct: 203 TDNSK--------------QVREVMKDVPLVTEVLTETDKSLE----LASKPGVPIE--I 242
Query: 442 DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 501
F V D + L+A TGN L LA KGY L++TG++ +
Sbjct: 243 FFIV--EDEFYSALVAATGNQEHYEALSELAAQKGYCLNNTGVYQ----------LDTNE 290
Query: 502 SLKFDTEKEVFDFLGFPWLEPHER 525
+++ D+EKE++ L P++ P R
Sbjct: 291 TVEIDSEKEIYQLLDLPYIIPELR 314
>gi|373952080|ref|ZP_09612040.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
gi|373888680|gb|EHQ24577.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
Length = 565
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 232 IEKLPFKIESA--DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 289
++KLPF I S D+++ + GIGKS+ I E++TTG + +L+ + + G +
Sbjct: 37 VDKLPFAIASKPLDELEKIDGIGKSLAAKIAELLTTGTMIELDELLAATPPGVVEMMG-I 95
Query: 290 WGIGPATAQKLYEKGH-RTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIP--------- 336
GIGP ++ + T+ +L NE+ L ++ GLK ++I+ I
Sbjct: 96 KGIGPKKIAVIWHDLNIETVGELFYACNENRLIEAKGFGLKTQEEIRKAIEFRMASNGKF 155
Query: 337 -RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 394
+VE + LQ+ +++LP+ ++ G YRR +L +VI D + G L +
Sbjct: 156 LYSQVEPLVAGLQEQLQKILPDAAMMVCGQYRRRCEIVTELCLVIGSGDPQEDIGVLQQ 214
>gi|448385519|ref|ZP_21564025.1| PHP domain protein [Haloterrigena thermotolerans DSM 11522]
gi|445657014|gb|ELZ09846.1| PHP domain protein [Haloterrigena thermotolerans DSM 11522]
Length = 583
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 145/358 (40%), Gaps = 64/358 (17%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 250
N I F + ++ A + + +Y +A + P I AD+V + + G
Sbjct: 4 NAEIAARFEEFADLLEADDVEYKPRAYRRAAENVRAHPSPI--ADRVAAGDREVLENIDG 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 309
+G ++ I E V TG + +L + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISAKIVEYVETGGIEELAELRAELPI-DIADITRIEGVGPKTAGKLYRELGVETLD 120
Query: 310 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME-----------RLLQKA---GEEVL 355
DL++ Q D+K P+ E +E +LL +A ++VL
Sbjct: 121 DLEDAAEAGEIQ--------DVKGFGPKTEANILENLEFARTVGQRQLLGEARPLADDVL 172
Query: 356 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 408
E + C GS RR + + GD+DV+ D ++ + ++V
Sbjct: 173 AYLEGLEAVERCEVAGSIRRWRETIGDVDVLAATEDGEA---VVEQFV------------ 217
Query: 409 LIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRL 468
S E D +++ G R R+D +V + L +TG+ N L
Sbjct: 218 ------SWESVDDEIES--GPEKASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVAL 269
Query: 469 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526
R A +G +L++ G F + + R + +TE +++ LG W+ P R
Sbjct: 270 RNYAIDRGMKLNEYGAFDVSGVEDHEADQRIGDRIAGETEAGMYEALGLDWIPPELRT 327
>gi|448330908|ref|ZP_21520184.1| PHP domain protein [Natrinema versiforme JCM 10478]
gi|445610744|gb|ELY64513.1| PHP domain protein [Natrinema versiforme JCM 10478]
Length = 598
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 149/363 (41%), Gaps = 59/363 (16%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 252
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPAPIADRIEAGDREAVENIDGVG 63
Query: 253 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 311
++ + E V TG + +LE + + I+ + G+GP TA KLY E G +TLDDL
Sbjct: 64 DAISSKVIEYVETGTIEELEDLRSELPI-DIADITRIEGVGPKTAGKLYRELGVQTLDDL 122
Query: 312 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 360
+ Q + G K +I + +LL +A ++VL + +
Sbjct: 123 EAAAEAGEVQEVKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESIDAVE 182
Query: 361 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
C GS RR + + GD+DV+ + G ED++ + +
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLA-----ATDAG----------------EDVVEAFVGWDS 221
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
D +++ G R R+D +V + + L +TG+ N LR A + +
Sbjct: 222 VDDEIES--GPEKASVRVGESRVDLRVVVPEEFGAALQYFTGSKDHNVALRNYAIDREMK 279
Query: 479 LDDTGLF----PATYGSGGK-----------QGVRARTSLKFDTEKEVFDFLGFPWLEPH 523
L++ G F A S + G R + +TE +++ LG PW+ P
Sbjct: 280 LNEYGAFDVSSEALRASSSRTESDDDIEDPESGQRVGERVAGETEDGMYEALGLPWIPPE 339
Query: 524 ERN 526
R
Sbjct: 340 LRT 342
>gi|435851850|ref|YP_007313436.1| DNA polymerase IV (family X) [Methanomethylovorans hollandica DSM
15978]
gi|433662480|gb|AGB49906.1| DNA polymerase IV (family X) [Methanomethylovorans hollandica DSM
15978]
Length = 574
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 68/329 (20%)
Query: 224 SYYKAIPVIEKLPFKIE---SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD--E 278
+Y KA IE+L + D + +PG+G++++ I+E++ TG E E
Sbjct: 29 AYQKAARHIEELEEDLNVLCKKDDLAHIPGVGEAIEAKIKEMLETGTFMAYEELRHTIPE 88
Query: 279 KVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTR 334
K+ I+ V GIGP TA LY K G + L L E + +G+K +++
Sbjct: 89 KIEEIT---AVQGIGPRTAYLLYTKLGVKDLKGLLRAAEEHRIRRIPGMGVKMEENVLIA 145
Query: 335 IPRH----------------EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 378
R E++ R L E++ EV I GS RR K + GD+D+
Sbjct: 146 AKRQFAEGNTGRFPLGLALPIAEEISRKLVDG--ELIREVQI--AGSIRRWKETVGDIDL 201
Query: 379 VIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRE 436
+ P+R L V+++ E + +I+ H +
Sbjct: 202 IACSNEPERAIEAFTLMDNVQEILEKGTTKGSVIYKEHIQ-------------------- 241
Query: 437 LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 496
+D ++ D + L +TG+ N +LR +A +KG L + GL +
Sbjct: 242 ----VDMRIVKDDSFGSLLQHFTGSKDHNVKLRNIALAKGLHLSEYGL----------KN 287
Query: 497 VRARTSLKFDTEKEVFDFLGFPWLEPHER 525
V + F E++ ++ LG ++ P R
Sbjct: 288 VETGEQMPFSAEEQQYEMLGLQFIPPELR 316
>gi|448543292|ref|ZP_21624861.1| DNA polymerase X [Haloferax sp. ATCC BAA-646]
gi|448550178|ref|ZP_21628701.1| DNA polymerase X [Haloferax sp. ATCC BAA-645]
gi|448559550|ref|ZP_21633624.1| DNA polymerase X [Haloferax sp. ATCC BAA-644]
gi|445706836|gb|ELZ58709.1| DNA polymerase X [Haloferax sp. ATCC BAA-646]
gi|445710940|gb|ELZ62735.1| DNA polymerase X [Haloferax sp. ATCC BAA-644]
gi|445711953|gb|ELZ63739.1| DNA polymerase X [Haloferax sp. ATCC BAA-645]
Length = 582
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 45/347 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 253
N I + + ++ A + SY +A + + P +E V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAAEGEGAVQEIDRVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 312
++ I E V TG++ +LE ++ V + L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELEELREELPVDMVGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 313 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 363
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIREVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAYLGDDDAVG 181
Query: 364 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEG 418
GS RR + + GD+DV+ D + +FL DL+ T E G
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAAAVID------------RFLAWDLVGDT-IEAG 228
Query: 419 TDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 478
G+ R+D +V Y L +TG+ N LR +A +G +
Sbjct: 229 EQKASVRVNGM----------RVDLRVVDPAEYGAALQYFTGSKDHNVHLRNIAIDRGLK 278
Query: 479 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+++ G+F + G RA T + DTE+ ++ L P + P R
Sbjct: 279 MNEYGMFDISDIEDPDDGPRAGTRVAGDTEESMYAALDLPLVPPELR 325
>gi|171319413|ref|ZP_02908520.1| PHP domain protein [Burkholderia ambifaria MEX-5]
gi|171095377|gb|EDT40354.1| PHP domain protein [Burkholderia ambifaria MEX-5]
Length = 592
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 139/356 (39%), Gaps = 67/356 (18%)
Query: 196 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPG 250
P N +F ++ ++ G + R +Y A I +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPAMIANGGDLGQIPS 61
Query: 251 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 309
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 310 DLKNEDSLTHSQRL---GLK----YFDDIKTRIPRHEVE------------QMERLLQKA 350
L+ E H + L G K D I R+ R +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALPGFGAKTEAHLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 351 G-EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 409
G E +P GS+RR + + GDLD+++ D + +V + L
Sbjct: 181 GVGEAVP------AGSFRRCRETVGDLDILVSARDPAA---VADAFVGCGDVARVL---- 227
Query: 410 IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLR 469
+ T S V GL ++D +V D + L+ +TG+ N LR
Sbjct: 228 -----ANGKTRSSVMLGNGL----------QVDLRVVDADAFGAALVYFTGSKAHNIALR 272
Query: 470 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+A++ G ++++ G+F R + TE V++ +G W+ P R
Sbjct: 273 RIAQAGGLKINEYGVF------------RGDERIAGATEASVYEAIGLHWVPPELR 316
>gi|367467812|ref|ZP_09467728.1| DNA-dependent DNA polymerase family X [Patulibacter sp. I11]
gi|365817122|gb|EHN12104.1| DNA-dependent DNA polymerase family X [Patulibacter sp. I11]
Length = 576
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 139/352 (39%), Gaps = 62/352 (17%)
Query: 199 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 254
N I E+ +L ++Y G R +Y A I P + + + V LPG+GK+
Sbjct: 9 NAAIAELLDELGDLYELEGAVVHRVLAYRNAAKAIRDAPRSVAAMTREGRVTELPGVGKT 68
Query: 255 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE------------ 302
+++ + +V TG++ LE + + + + G+GP A+KL++
Sbjct: 69 LEEKLTALVETGEIPALEKL-RSRVPAGLVVITRLPGLGPKRARKLHDALGVDGPQALRA 127
Query: 303 --KGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-- 358
+ HR + DL + + + L P+ E+ + R L GE ++ E+
Sbjct: 128 AIEQHR-VRDLAGFGAKSEERLLAALDAAGDAVDGPKREI--LSRAL-AVGEALVAELRA 183
Query: 359 -----IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 413
+ GS RR S DLD++ D ++ F DLI
Sbjct: 184 HPSSDRVELAGSARRWADSVKDLDIIATADDPQALID------------AFAASDLI--- 228
Query: 414 HSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAE 473
E + SGV + + ID +V D + L +TG+ N +R A
Sbjct: 229 --AEISRSGVAGAHAIA-----QSGIAIDLRVVAPDQFGNLLQHFTGSKAHNVAIREAAV 281
Query: 474 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
+G + + G+ G S +F TE+EV+ LG PW+ P R
Sbjct: 282 RRGLHVSEYGILDDETGQ----------SERFATEEEVYARLGLPWIPPELR 323
>gi|322369245|ref|ZP_08043810.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
gi|320550977|gb|EFW92626.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
Length = 579
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 142/346 (41%), Gaps = 43/346 (12%)
Query: 199 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 253
N + +F + ++ A + +Y +A I P IE D V +P +G
Sbjct: 4 NAEVAALFEEYADLVEAQDVQYKPQAYRRAADNIRDYPEDIEELAAEGPDAVGQIPQVGD 63
Query: 254 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 312
S+ + E TG++ +LE + V L V G+GP T LY E G +TLDDL+
Sbjct: 64 SIASKVIEYFETGEIEELEEERANLPVEMAELT-RVEGVGPKTVGDLYHELGVQTLDDLE 122
Query: 313 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP--EVIILCG- 363
+ Q + G K +I I + LL A GE+VL + I G
Sbjct: 123 DAARKGKIQEIKGYGPKSEQNILDGIEFARTVRGRELLGDARPVGEQVLAFFDEIPTVGR 182
Query: 364 ----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419
GS RR + + GD+DV+ ++++ + + + + + E GT
Sbjct: 183 HELAGSLRRWRETIGDIDVLAESEEKEAVIDAFTDWGRATEVI-------------EAGT 229
Query: 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479
D R RID +V + + L +TG+ N LR A +GY++
Sbjct: 230 DKAA----------VRVSDMRIDLRVVVPEEFGSALQYFTGSKNHNITLRNYAIEQGYKV 279
Query: 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
++ G+F + G R + +TE ++D LG P + P R
Sbjct: 280 NEYGVFDVSDVENPDAGQRVGERVAGETEASMYDALGLPLIPPEMR 325
>gi|448309428|ref|ZP_21499289.1| DNA-directed DNA polymerase [Natronorubrum bangense JCM 10635]
gi|445590733|gb|ELY44946.1| DNA-directed DNA polymerase [Natronorubrum bangense JCM 10635]
Length = 583
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 135/332 (40%), Gaps = 62/332 (18%)
Query: 220 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 279
RR+ +A PV P + D ++ + G+G ++ I E V TG + +LE +
Sbjct: 31 RRAAENIRAHPVPISDPVASGNEDVLEEIDGVGDAISAKIVEYVETGTIEELEELRAELP 90
Query: 280 VRTISLFGEVWGIGPATAQKLYEK------------------------GHRTLDDLKNED 315
+ I+ + G+GP TA KLY + G +T +++ D
Sbjct: 91 I-DIADITRIEGVGPKTAGKLYRELGVESLDALEAAAEAGDVQEIKGFGPKTEQNIR--D 147
Query: 316 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC--GGSYRRGKASC 373
+L ++++G +Y + + +E L E + C GS RR + +
Sbjct: 148 NLEFARQIGQRYLLGEGRPLADDVLAFLEGL----------EAVERCEVAGSIRRWRETI 197
Query: 374 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433
GD+DV+ + G ED++ + E D +++ G
Sbjct: 198 GDVDVLA-----ATDAG----------------EDVVEAFVDWESVDGEIES--GPEKAS 234
Query: 434 GRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 493
R R+D +V + + L +TG+ N RLR A +G +L++ G F +
Sbjct: 235 VRVGEIRVDLRVVVPEEFGSALQYFTGSKDHNVRLRNYAIDRGMKLNEYGAFDVSEIDAP 294
Query: 494 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 525
G+R + DTE +++ LG PW+ P R
Sbjct: 295 DAGLRVGDRVAGDTEAGMYEALGLPWIPPELR 326
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,513,458,246
Number of Sequences: 23463169
Number of extensions: 365862147
Number of successful extensions: 1120653
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 813
Number of HSP's that attempted gapping in prelim test: 1115930
Number of HSP's gapped (non-prelim): 2514
length of query: 527
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 380
effective length of database: 8,910,109,524
effective search space: 3385841619120
effective search space used: 3385841619120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)