Query 009742
Match_columns 527
No_of_seqs 282 out of 851
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihm_A POL MU, DNA polymerase 100.0 2.6E-83 8.8E-88 669.3 32.9 333 159-527 2-360 (360)
2 1jms_A Terminal deoxynucleotid 100.0 9.3E-83 3.2E-87 668.9 33.5 335 157-527 19-381 (381)
3 2bcq_A DNA polymerase lambda; 100.0 1.1E-82 3.8E-87 658.7 31.2 326 194-527 8-335 (335)
4 2fmp_A DNA polymerase beta; nu 100.0 1.6E-79 5.4E-84 635.4 32.6 315 197-527 10-335 (335)
5 3b0x_A DNA polymerase beta fam 100.0 6.3E-62 2.2E-66 537.4 26.0 295 197-526 1-315 (575)
6 2w9m_A Polymerase X; SAXS, DNA 100.0 5.2E-59 1.8E-63 514.2 24.5 282 196-526 7-305 (578)
7 1jaj_A DNA polymerase beta-lik 100.0 6.1E-42 2.1E-46 322.3 -1.0 166 323-526 6-174 (174)
8 2dun_A POL MU, DNA polymerase 99.9 2.1E-28 7.2E-33 217.7 8.9 88 12-99 4-108 (133)
9 2coe_A Deoxynucleotidyltransfe 99.9 3.6E-22 1.2E-26 176.4 9.7 91 10-100 12-117 (120)
10 2jw5_A DNA polymerase lambda; 99.7 3.4E-18 1.2E-22 148.4 3.7 88 13-100 6-106 (106)
11 1vq8_Y 50S ribosomal protein L 99.5 2.8E-17 9.5E-22 162.0 -9.2 179 284-482 15-232 (241)
12 1wf6_A Similar to S.pombe -RAD 99.4 2.2E-13 7.4E-18 122.5 8.9 84 13-98 35-127 (132)
13 2ebw_A DNA repair protein REV1 99.4 3.1E-13 1.1E-17 114.5 8.1 86 11-98 5-96 (97)
14 3pa6_A Microcephalin; BRCT dom 99.4 5E-13 1.7E-17 116.0 8.4 85 17-101 6-99 (107)
15 4id3_A DNA repair protein REV1 99.4 6.3E-13 2.2E-17 111.0 7.8 83 13-97 2-91 (92)
16 3l3e_A DNA topoisomerase 2-bin 99.3 3.7E-12 1.3E-16 110.0 7.7 85 14-100 11-105 (107)
17 2d8m_A DNA-repair protein XRCC 99.2 1E-11 3.4E-16 111.1 6.5 88 11-100 15-109 (129)
18 3pc6_A DNA repair protein XRCC 99.2 3.3E-11 1.1E-15 103.9 7.8 82 17-99 6-96 (104)
19 2cou_A ECT2 protein; BRCT doma 99.1 2E-11 7E-16 106.0 4.5 80 17-98 11-97 (109)
20 3ii6_X DNA ligase 4; XRCC4, NH 99.1 1.4E-10 4.7E-15 115.9 8.4 84 14-97 160-263 (263)
21 3l46_A Protein ECT2; alternati 99.1 6.8E-11 2.3E-15 103.3 5.3 81 17-99 20-107 (112)
22 2kp7_A Crossover junction endo 99.0 7.1E-10 2.4E-14 92.5 7.8 69 196-265 12-80 (87)
23 1t15_A Breast cancer type 1 su 98.9 4.6E-10 1.6E-14 107.5 5.2 74 25-98 6-92 (214)
24 2nte_A BARD-1, BRCA1-associate 98.9 7.5E-10 2.6E-14 106.4 6.0 73 26-98 5-87 (210)
25 1l0b_A BRCA1; TANDEM-BRCT, thr 98.9 1.4E-09 4.8E-14 105.5 6.2 80 17-98 3-95 (229)
26 2ep8_A Pescadillo homolog 1; A 98.8 3.6E-09 1.2E-13 90.6 5.9 80 13-96 7-100 (100)
27 3ii6_X DNA ligase 4; XRCC4, NH 98.8 6.6E-09 2.3E-13 103.7 6.7 86 13-99 5-97 (263)
28 3olc_X DNA topoisomerase 2-bin 98.7 2.7E-08 9.2E-13 101.0 7.6 83 16-100 197-287 (298)
29 3pc7_A DNA ligase 3; DNA repai 98.7 1.4E-08 4.9E-13 84.6 4.5 72 17-92 15-87 (88)
30 3al2_A DNA topoisomerase 2-bin 98.6 4.3E-08 1.5E-12 96.2 6.4 77 20-98 8-94 (235)
31 3ef0_A RNA polymerase II subun 98.6 5E-08 1.7E-12 101.9 6.4 81 17-97 281-371 (372)
32 3u3z_A Microcephalin; DNA repa 98.6 4.7E-08 1.6E-12 93.5 5.6 72 27-98 15-95 (199)
33 3sqd_A PAX-interacting protein 98.5 6.1E-08 2.1E-12 94.1 5.3 78 18-98 13-98 (219)
34 1z56_C DNA ligase IV; DNA repa 98.5 3.2E-08 1.1E-12 98.2 3.2 84 13-97 155-261 (264)
35 1kzy_C Tumor suppressor P53-bi 98.5 1E-07 3.5E-12 94.8 6.8 84 13-98 10-136 (259)
36 2etx_A Mediator of DNA damage 98.4 5.8E-08 2E-12 93.4 2.9 74 19-98 10-91 (209)
37 3ef1_A RNA polymerase II subun 98.4 1.6E-07 5.4E-12 99.8 5.6 81 17-97 351-441 (442)
38 3olc_X DNA topoisomerase 2-bin 98.2 1.8E-06 6.3E-11 87.5 7.8 79 15-95 102-187 (298)
39 2vxb_A DNA repair protein RHP9 98.2 1.1E-06 3.9E-11 86.3 5.4 82 18-99 2-118 (241)
40 1z56_C DNA ligase IV; DNA repa 98.1 1.5E-07 5.1E-12 93.4 -2.2 83 16-98 3-101 (264)
41 3l41_A BRCT-containing protein 98.1 9.2E-07 3.1E-11 85.9 1.6 71 22-98 9-87 (220)
42 3u3z_A Microcephalin; DNA repa 97.9 3.8E-06 1.3E-10 80.2 2.7 82 15-98 116-198 (199)
43 1l0b_A BRCA1; TANDEM-BRCT, thr 97.9 1.9E-05 6.6E-10 76.1 7.2 82 16-98 115-213 (229)
44 1t15_A Breast cancer type 1 su 97.9 2E-05 6.7E-10 75.0 7.1 83 15-98 112-211 (214)
45 2edu_A Kinesin-like protein KI 97.6 4.9E-05 1.7E-09 64.3 4.5 57 241-311 38-95 (98)
46 1kzy_C Tumor suppressor P53-bi 97.4 0.00018 6.2E-09 71.3 6.7 79 16-95 153-249 (259)
47 2k6g_A Replication factor C su 97.2 0.0012 4.2E-08 56.9 8.6 75 13-88 27-109 (109)
48 2nte_A BARD-1, BRCA1-associate 97.2 0.00033 1.1E-08 66.7 5.5 78 16-94 102-210 (210)
49 2duy_A Competence protein come 97.2 9.5E-05 3.2E-09 59.3 1.4 46 242-302 26-71 (75)
50 2vxb_A DNA repair protein RHP9 97.1 0.00032 1.1E-08 68.8 4.8 77 16-92 149-241 (241)
51 1l7b_A DNA ligase; BRCT, autos 97.0 0.00072 2.5E-08 56.6 5.2 70 15-86 4-80 (92)
52 2etx_A Mediator of DNA damage 97.0 0.00098 3.3E-08 63.6 6.7 81 17-100 114-204 (209)
53 2cok_A Poly [ADP-ribose] polym 97.0 0.0011 3.8E-08 57.6 6.2 77 16-94 8-104 (113)
54 3arc_U Photosystem II 12 kDa e 96.9 0.00091 3.1E-08 56.6 4.8 47 241-302 24-70 (97)
55 1s5l_U Photosystem II 12 kDa e 96.8 0.0012 4.3E-08 58.6 5.1 46 241-301 61-106 (134)
56 2ebu_A Replication factor C su 96.8 0.0038 1.3E-07 54.2 7.8 74 12-86 16-97 (112)
57 1x2i_A HEF helicase/nuclease; 96.5 0.005 1.7E-07 48.5 6.4 51 243-302 14-64 (75)
58 1ixr_A Holliday junction DNA h 96.3 0.0026 8.8E-08 60.3 4.1 52 244-302 73-125 (191)
59 1kft_A UVRC, excinuclease ABC 96.2 0.004 1.4E-07 50.0 4.2 51 243-302 24-74 (78)
60 2ztd_A Holliday junction ATP-d 96.1 0.0038 1.3E-07 60.1 4.1 52 244-302 89-141 (212)
61 1z00_A DNA excision repair pro 96.0 0.0082 2.8E-07 49.4 5.3 51 243-302 19-69 (89)
62 1cuk_A RUVA protein; DNA repai 96.0 0.0036 1.2E-07 59.9 3.4 52 244-302 74-126 (203)
63 2i5h_A Hypothetical protein AF 95.9 0.006 2.1E-07 57.8 4.6 57 220-294 115-172 (205)
64 2a1j_B DNA excision repair pro 95.8 0.0096 3.3E-07 49.2 5.0 51 243-302 32-82 (91)
65 2duy_A Competence protein come 95.8 0.0054 1.8E-07 48.9 3.2 46 282-333 25-71 (75)
66 3al2_A DNA topoisomerase 2-bin 95.8 0.011 3.9E-07 57.4 6.1 80 16-98 133-229 (235)
67 2owo_A DNA ligase; protein-DNA 95.8 0.018 6.3E-07 64.1 8.4 84 243-336 480-565 (671)
68 1dgs_A DNA ligase; AMP complex 95.7 0.012 4E-07 65.6 6.4 83 243-335 475-559 (667)
69 3arc_U Photosystem II 12 kDa e 95.6 0.0027 9.4E-08 53.6 0.9 46 282-333 24-70 (97)
70 3sqd_A PAX-interacting protein 95.6 0.026 8.8E-07 54.3 7.6 79 16-97 120-218 (219)
71 2l42_A DNA-binding protein RAP 95.5 0.0073 2.5E-07 50.7 3.1 84 15-100 8-97 (106)
72 2a1j_B DNA excision repair pro 95.2 0.014 4.7E-07 48.3 3.9 52 279-331 27-80 (91)
73 3bqs_A Uncharacterized protein 95.0 0.014 4.8E-07 48.8 3.3 31 285-315 5-35 (93)
74 1z00_A DNA excision repair pro 94.9 0.02 6.8E-07 47.0 3.9 47 280-327 15-63 (89)
75 3nyb_A Poly(A) RNA polymerase 94.9 0.25 8.7E-06 50.1 13.0 125 343-478 45-177 (323)
76 1s5l_U Photosystem II 12 kDa e 94.6 0.011 3.7E-07 52.6 1.6 39 282-326 61-100 (134)
77 2bgw_A XPF endonuclease; hydro 94.3 0.042 1.4E-06 52.5 5.1 50 244-302 163-212 (219)
78 1kft_A UVRC, excinuclease ABC 94.2 0.011 3.7E-07 47.5 0.7 48 283-331 23-72 (78)
79 1x2i_A HEF helicase/nuclease; 94.1 0.022 7.5E-07 44.7 2.4 48 282-330 12-61 (75)
80 3qbz_A DDK kinase regulatory s 94.0 0.044 1.5E-06 49.9 4.4 48 17-64 57-115 (160)
81 2w9m_A Polymerase X; SAXS, DNA 93.7 0.042 1.4E-06 60.4 4.3 53 241-300 95-147 (578)
82 3mab_A Uncharacterized protein 93.6 0.049 1.7E-06 45.5 3.6 31 285-315 5-35 (93)
83 4b21_A Probable DNA-3-methylad 93.6 0.1 3.5E-06 50.7 6.5 61 243-304 107-170 (232)
84 3oq0_A DBF4, protein DNA52; DD 93.2 0.13 4.3E-06 46.5 5.9 49 17-65 20-78 (151)
85 3fhg_A Mjogg, N-glycosylase/DN 93.2 0.64 2.2E-05 44.1 11.2 124 227-354 50-186 (207)
86 3s6i_A DNA-3-methyladenine gly 93.1 0.13 4.4E-06 49.8 6.3 54 250-303 102-158 (228)
87 1vq8_Y 50S ribosomal protein L 93.1 0.017 5.9E-07 56.5 0.0 54 242-303 14-67 (241)
88 1ylq_A Putative nucleotidyltra 92.9 0.25 8.7E-06 40.9 7.1 31 354-384 14-46 (96)
89 4glx_A DNA ligase; inhibitor, 92.8 0.12 4E-06 56.8 6.1 83 243-335 480-564 (586)
90 3b0x_A DNA polymerase beta fam 92.7 0.066 2.3E-06 58.7 4.1 55 241-301 91-145 (575)
91 2i5h_A Hypothetical protein AF 92.5 0.063 2.1E-06 50.9 3.0 77 255-331 102-185 (205)
92 2ztd_A Holliday junction ATP-d 92.3 0.034 1.2E-06 53.4 1.0 52 280-331 84-139 (212)
93 3oq4_A DBF4, protein DNA52; DD 92.2 0.25 8.7E-06 43.7 6.3 49 17-65 3-61 (134)
94 1u9l_A Transcription elongatio 91.9 0.093 3.2E-06 41.5 2.9 50 282-331 4-55 (70)
95 1z00_B DNA repair endonuclease 91.5 0.17 5.9E-06 41.3 4.2 34 280-314 14-47 (84)
96 1ixr_A Holliday junction DNA h 91.3 0.063 2.2E-06 50.7 1.5 51 281-331 69-123 (191)
97 1dgs_A DNA ligase; AMP complex 91.2 0.054 1.9E-06 60.3 1.2 49 288-336 445-496 (667)
98 4gfj_A Topoisomerase V; helix- 91.2 0.13 4.4E-06 53.6 3.8 49 283-332 467-525 (685)
99 2owo_A DNA ligase; protein-DNA 91.0 0.036 1.2E-06 61.7 -0.5 49 287-335 449-500 (671)
100 3t7k_A RTT107, regulator of TY 90.9 0.3 1E-05 47.8 5.9 77 22-98 21-119 (256)
101 2a1j_A DNA repair endonuclease 90.8 0.15 5.2E-06 39.2 3.0 30 284-314 4-33 (63)
102 2rff_A Putative nucleotidyltra 90.7 1.1 3.6E-05 38.3 8.6 41 343-384 19-61 (111)
103 1cuk_A RUVA protein; DNA repai 90.6 0.079 2.7E-06 50.5 1.5 52 280-331 69-124 (203)
104 1wcn_A Transcription elongatio 90.2 0.19 6.4E-06 39.7 3.2 29 286-314 9-37 (70)
105 4dez_A POL IV 1, DNA polymeras 89.8 0.16 5.6E-06 52.0 3.2 29 287-315 181-209 (356)
106 3huf_A DNA repair and telomere 89.7 0.3 1E-05 49.4 5.0 64 19-86 113-187 (325)
107 2a1j_A DNA repair endonuclease 89.2 0.33 1.1E-05 37.3 3.8 49 243-302 4-53 (63)
108 2yg9_A DNA-3-methyladenine gly 89.2 0.6 2E-05 44.9 6.5 53 250-303 110-165 (225)
109 3i0w_A 8-oxoguanine-DNA-glycos 88.4 0.97 3.3E-05 45.1 7.7 58 243-303 170-230 (290)
110 3c65_A Uvrabc system protein C 88.4 0.072 2.5E-06 51.6 -0.6 50 243-302 173-222 (226)
111 4e8f_A Poly(A) RNA polymerase 88.3 0.81 2.8E-05 47.9 7.3 59 344-402 69-128 (405)
112 1b22_A DNA repair protein RAD5 87.9 0.17 5.8E-06 43.8 1.5 45 282-327 24-70 (114)
113 3n0u_A Probable N-glycosylase/ 87.7 0.27 9.4E-06 47.3 3.0 93 253-353 100-197 (219)
114 1jx4_A DNA polymerase IV (fami 87.7 0.18 6.1E-06 51.7 1.7 29 286-314 180-208 (352)
115 1no5_A Hypothetical protein HI 87.3 2.2 7.4E-05 36.2 8.2 47 335-385 9-56 (114)
116 3osn_A DNA polymerase IOTA; ho 87.1 0.3 1E-05 51.4 3.1 29 286-314 236-264 (420)
117 1im4_A DBH; DNA polymerase PAL 86.9 0.22 7.4E-06 47.9 1.8 29 286-314 186-214 (221)
118 1q79_A Poly(A) polymerase alph 86.9 5.3 0.00018 43.1 12.8 52 355-406 92-144 (514)
119 3sgi_A DNA ligase; HET: DNA AM 86.5 0.13 4.5E-06 56.6 0.0 87 243-339 491-585 (615)
120 3gqc_A DNA repair protein REV1 86.5 0.32 1.1E-05 52.5 3.0 28 287-314 318-345 (504)
121 2jhn_A ALKA, 3-methyladenine D 86.0 0.77 2.6E-05 45.9 5.3 59 244-306 174-232 (295)
122 3bq0_A POL IV, DBH, DNA polyme 85.8 0.21 7.3E-06 51.1 1.1 29 286-314 181-209 (354)
123 2hhp_A Poly(A) polymerase; tem 85.8 7.8 0.00027 41.9 13.4 50 357-406 81-131 (530)
124 2va8_A SSO2462, SKI2-type heli 85.7 0.35 1.2E-05 53.8 2.9 37 277-315 651-687 (715)
125 3l41_A BRCT-containing protein 85.5 1.9 6.4E-05 41.3 7.6 81 16-97 111-213 (220)
126 2zj8_A DNA helicase, putative 85.2 0.23 7.9E-06 55.4 1.1 34 280-314 643-676 (720)
127 2edu_A Kinesin-like protein KI 85.2 0.43 1.5E-05 39.7 2.5 43 283-331 39-86 (98)
128 2aq4_A DNA repair protein REV1 84.8 0.46 1.6E-05 50.1 3.2 29 286-314 243-273 (434)
129 3c1y_A DNA integrity scanning 83.9 0.62 2.1E-05 48.3 3.5 51 280-331 311-363 (377)
130 2ikf_A RNA uridylyl transferas 83.8 6 0.00021 40.3 11.0 128 337-480 49-200 (353)
131 1z00_B DNA repair endonuclease 83.6 0.9 3.1E-05 37.0 3.7 50 243-303 18-68 (84)
132 2h56_A DNA-3-methyladenine gly 83.5 1.5 5.2E-05 42.2 6.0 59 243-303 96-157 (233)
133 3bzc_A TEX; helix-turn-helix, 83.3 1 3.5E-05 51.1 5.3 50 241-302 506-556 (785)
134 4f4y_A POL IV, DNA polymerase 82.9 0.26 8.8E-06 50.8 0.2 28 287-314 182-209 (362)
135 4glx_A DNA ligase; inhibitor, 82.7 0.21 7.3E-06 54.8 -0.5 49 287-335 449-500 (586)
136 4fh3_A Poly(A) RNA polymerase 82.7 2.2 7.4E-05 43.2 7.1 59 345-403 42-101 (349)
137 2bgw_A XPF endonuclease; hydro 82.6 0.65 2.2E-05 44.2 2.9 48 282-330 160-209 (219)
138 1wcn_A Transcription elongatio 81.4 1.7 5.8E-05 34.1 4.4 52 243-302 7-58 (70)
139 3im1_A Protein SNU246, PRE-mRN 80.8 3.2 0.00011 41.8 7.5 59 286-361 159-219 (328)
140 3vdp_A Recombination protein R 80.6 0.84 2.9E-05 43.5 2.8 20 281-300 23-42 (212)
141 3pzp_A DNA polymerase kappa; D 78.8 1.1 3.7E-05 48.4 3.4 28 287-314 341-368 (517)
142 3bqs_A Uncharacterized protein 78.8 1.4 4.9E-05 36.5 3.4 56 241-302 2-57 (93)
143 2nrt_A Uvrabc system protein C 78.8 1.3 4.4E-05 42.6 3.5 49 243-302 168-217 (220)
144 1vdd_A Recombination protein R 78.6 1.1 3.6E-05 43.2 2.8 22 280-301 8-29 (228)
145 3c65_A Uvrabc system protein C 78.2 0.43 1.5E-05 46.1 0.0 48 283-332 172-221 (226)
146 3fhf_A Mjogg, N-glycosylase/DN 78.1 1.9 6.6E-05 41.2 4.5 93 255-354 96-193 (214)
147 2p6r_A Afuhel308 helicase; pro 77.7 1.2 4.3E-05 49.3 3.5 41 274-315 623-663 (702)
148 1wot_A Putative minimal nucleo 77.6 4.2 0.00014 33.5 6.0 43 341-384 10-53 (98)
149 1exn_A 5'-exonuclease, 5'-nucl 76.7 1.2 4.2E-05 44.5 2.8 26 288-314 207-232 (290)
150 1t94_A Polymerase (DNA directe 76.5 1.4 4.9E-05 46.6 3.4 29 286-314 284-312 (459)
151 2nrt_A Uvrabc system protein C 76.4 1.7 5.7E-05 41.8 3.5 31 283-314 167-197 (220)
152 1kea_A Possible G-T mismatches 75.5 1.7 5.8E-05 41.5 3.4 23 281-303 112-134 (221)
153 4ecq_A DNA polymerase ETA; tra 75.3 0.94 3.2E-05 47.8 1.6 28 287-314 256-284 (435)
154 3q8k_A Flap endonuclease 1; he 75.3 1.4 4.8E-05 45.0 2.9 25 288-314 236-261 (341)
155 2q0z_X Protein Pro2281; SEC63, 75.2 4 0.00014 41.3 6.3 28 286-313 163-190 (339)
156 1kg2_A A/G-specific adenine gl 74.9 1.7 5.8E-05 41.6 3.2 21 282-302 107-127 (225)
157 2xhi_A N-glycosylase/DNA lyase 74.1 3.5 0.00012 42.4 5.6 53 250-303 215-272 (360)
158 3sgi_A DNA ligase; HET: DNA AM 70.2 0.91 3.1E-05 50.0 0.0 65 285-350 459-532 (615)
159 2abk_A Endonuclease III; DNA-r 69.6 2.6 8.9E-05 39.8 3.1 23 281-303 106-128 (211)
160 3psf_A Transcription elongatio 69.6 3.4 0.00011 48.2 4.5 47 243-301 717-765 (1030)
161 3qe9_Y Exonuclease 1; exonucle 68.8 2.7 9.3E-05 43.1 3.2 27 287-313 228-255 (352)
162 4f92_B U5 small nuclear ribonu 68.7 6.5 0.00022 48.5 7.1 29 286-314 1559-1587(1724)
163 1pu6_A 3-methyladenine DNA gly 67.7 2.4 8.3E-05 40.4 2.4 23 281-303 118-140 (218)
164 1rxw_A Flap structure-specific 67.2 2.7 9.3E-05 42.6 2.8 26 287-314 238-264 (336)
165 1a76_A Flap endonuclease-1 pro 66.6 3 0.0001 42.1 3.0 25 288-314 229-254 (326)
166 3n5n_X A/G-specific adenine DN 66.5 12 0.00039 37.3 7.2 21 283-303 127-148 (287)
167 1ci4_A Protein (barrier-TO-aut 66.3 4.7 0.00016 33.1 3.5 29 285-313 19-47 (89)
168 3mab_A Uncharacterized protein 66.2 2.6 8.9E-05 35.0 2.0 38 241-282 2-39 (93)
169 1orn_A Endonuclease III; DNA r 65.7 4.2 0.00014 38.9 3.7 21 282-302 111-131 (226)
170 1kg2_A A/G-specific adenine gl 64.9 8.7 0.0003 36.5 5.8 66 221-293 85-152 (225)
171 3psi_A Transcription elongatio 64.3 4.8 0.00017 47.7 4.5 47 243-301 714-762 (1219)
172 2b4v_A RNA editing complex pro 62.2 12 0.0004 39.9 6.7 59 344-402 45-109 (468)
173 3vdp_A Recombination protein R 61.7 3.9 0.00013 38.9 2.5 32 243-274 26-57 (212)
174 1pzn_A RAD51, DNA repair and r 61.7 4.7 0.00016 41.0 3.4 30 285-314 36-65 (349)
175 2bcq_A DNA polymerase lambda; 61.6 1.7 5.9E-05 44.3 0.1 50 283-332 56-113 (335)
176 1kea_A Possible G-T mismatches 61.5 7.9 0.00027 36.8 4.7 43 221-263 91-135 (221)
177 1ul1_X Flap endonuclease-1; pr 61.4 4.2 0.00014 42.0 2.9 31 283-314 225-261 (379)
178 2izo_A FEN1, flap structure-sp 60.6 2.9 0.0001 42.6 1.6 26 288-314 238-263 (346)
179 2fmp_A DNA polymerase beta; nu 60.4 3.1 0.00011 42.3 1.8 49 283-331 56-114 (335)
180 3ory_A Flap endonuclease 1; hy 60.2 2.7 9.1E-05 43.3 1.2 24 288-313 255-279 (363)
181 2ihm_A POL MU, DNA polymerase 59.8 2.6 8.9E-05 43.4 1.1 47 286-332 63-119 (360)
182 1z3e_B DNA-directed RNA polyme 59.6 10 0.00034 30.0 4.2 23 243-265 41-63 (73)
183 4e9f_A Methyl-CPG-binding doma 59.1 3.3 0.00011 37.8 1.5 24 241-264 102-125 (161)
184 1jx4_A DNA polymerase IV (fami 58.6 12 0.0004 38.0 5.7 53 245-307 180-234 (352)
185 3r8n_M 30S ribosomal protein S 58.5 5.5 0.00019 34.3 2.7 25 282-306 14-39 (114)
186 1kny_A Kntase, kanamycin nucle 57.9 11 0.00038 36.4 5.2 50 335-384 7-59 (253)
187 1mpg_A ALKA, 3-methyladenine D 57.4 10 0.00034 37.4 4.8 24 280-303 203-226 (282)
188 3n5n_X A/G-specific adenine DN 56.9 8.5 0.00029 38.3 4.2 66 221-293 104-172 (287)
189 3fsp_A A/G-specific adenine gl 56.5 9.4 0.00032 39.0 4.6 66 221-293 94-161 (369)
190 3psf_A Transcription elongatio 56.2 4.2 0.00014 47.4 2.1 33 282-314 715-753 (1030)
191 3bzc_A TEX; helix-turn-helix, 55.7 5.8 0.0002 45.0 3.1 31 283-313 507-542 (785)
192 1b43_A Protein (FEN-1); nuclea 54.8 5.4 0.00018 40.4 2.4 26 288-314 241-266 (340)
193 1orn_A Endonuclease III; DNA r 54.1 14 0.00047 35.3 5.0 43 221-263 89-133 (226)
194 3u5c_S 40S ribosomal protein S 53.2 7.4 0.00025 34.9 2.7 25 282-306 28-53 (146)
195 4gfj_A Topoisomerase V; helix- 53.0 9.9 0.00034 39.8 4.0 56 245-312 470-525 (685)
196 1r89_A TRNA nucleotidyltransfe 52.8 15 0.00052 38.7 5.5 30 358-387 40-71 (437)
197 4ebj_A Aminoglycoside nucleoti 52.4 16 0.00056 35.7 5.2 47 337-384 19-68 (272)
198 2abk_A Endonuclease III; DNA-r 52.2 12 0.00042 35.1 4.3 43 221-263 85-129 (211)
199 1gm5_A RECG; helicase, replica 52.0 4.4 0.00015 45.9 1.3 27 286-312 117-143 (780)
200 3mfi_A DNA polymerase ETA; DNA 51.8 4.6 0.00016 43.6 1.4 27 287-313 310-340 (520)
201 1b22_A DNA repair protein RAD5 51.4 5.7 0.0002 34.1 1.7 63 241-312 24-93 (114)
202 1vdd_A Recombination protein R 51.3 6.8 0.00023 37.6 2.3 32 243-274 12-43 (228)
203 3fhg_A Mjogg, N-glycosylase/DN 51.1 6.4 0.00022 37.0 2.1 22 241-262 115-136 (207)
204 4dez_A POL IV 1, DNA polymeras 50.8 20 0.00069 36.2 6.0 53 245-307 180-234 (356)
205 3k4g_A DNA-directed RNA polyme 50.3 17 0.0006 29.6 4.3 23 243-265 44-66 (86)
206 3jz0_A Lincosamide nucleotidyl 49.7 61 0.0021 32.0 9.1 102 339-461 24-127 (287)
207 3psi_A Transcription elongatio 49.3 6.2 0.00021 46.8 2.0 33 282-314 712-750 (1219)
208 3iz6_M 40S ribosomal protein S 49.1 8.9 0.00031 34.6 2.6 25 282-306 26-51 (152)
209 3j20_O 30S ribosomal protein S 48.8 9.2 0.00031 34.4 2.6 25 282-306 21-46 (148)
210 1jms_A Terminal deoxynucleotid 48.2 5.3 0.00018 41.4 1.1 46 286-331 82-137 (381)
211 2kng_A Protein LSR2; DNA-bindi 48.1 12 0.0004 28.0 2.7 22 465-486 15-36 (55)
212 2pbe_A AAD6, aminoglycoside 6- 47.9 47 0.0016 32.9 8.0 42 343-386 10-55 (294)
213 3osn_A DNA polymerase IOTA; ho 47.3 19 0.00066 37.5 5.3 53 245-307 236-290 (420)
214 4gns_A Chitin biosynthesis pro 47.0 17 0.00057 33.5 4.1 82 19-100 162-256 (290)
215 3gfk_B DNA-directed RNA polyme 46.7 19 0.00064 28.9 3.9 23 243-265 48-70 (79)
216 2xzm_M RPS18E; ribosome, trans 45.9 11 0.00037 34.2 2.6 47 282-349 28-75 (155)
217 2xhi_A N-glycosylase/DNA lyase 45.7 21 0.00072 36.5 5.2 49 214-262 212-272 (360)
218 3c1y_A DNA integrity scanning 45.3 6.8 0.00023 40.5 1.4 20 283-302 346-365 (377)
219 1pu6_A 3-methyladenine DNA gly 43.9 18 0.0006 34.3 4.0 43 221-263 93-141 (218)
220 3hj4_A Minor editosome-associa 43.4 29 0.001 35.9 5.8 36 350-385 38-74 (384)
221 2vqe_M 30S ribosomal protein S 43.4 7 0.00024 34.2 1.0 25 282-306 15-40 (126)
222 2h56_A DNA-3-methyladenine gly 43.4 13 0.00046 35.5 3.1 42 221-262 107-157 (233)
223 1z3e_B DNA-directed RNA polyme 43.3 6.6 0.00022 31.0 0.7 43 290-332 14-58 (73)
224 3gqc_A DNA repair protein REV1 43.1 28 0.00095 37.3 5.8 53 245-307 317-371 (504)
225 4b21_A Probable DNA-3-methylad 43.1 19 0.00064 34.5 4.1 42 221-262 118-169 (232)
226 3i0w_A 8-oxoguanine-DNA-glycos 43.0 25 0.00086 34.7 5.1 46 217-262 176-230 (290)
227 1px5_A 2'-5'-oligoadenylate sy 42.9 25 0.00087 35.4 5.2 26 359-384 56-83 (349)
228 2fcl_A Hypothetical protein TM 42.3 45 0.0015 30.2 6.3 43 356-405 32-78 (169)
229 1mpg_A ALKA, 3-methyladenine D 42.1 25 0.00085 34.5 4.9 48 216-263 172-227 (282)
230 2zc2_A DNAD-like replication p 41.9 14 0.00047 28.9 2.4 19 294-312 59-77 (78)
231 3bq0_A POL IV, DBH, DNA polyme 41.7 24 0.00083 35.6 4.9 53 245-307 181-235 (354)
232 2i1q_A DNA repair and recombin 41.6 12 0.0004 37.1 2.4 29 286-314 5-33 (322)
233 3ci0_K Pseudopilin GSPK; gener 40.7 7 0.00024 38.9 0.6 75 238-314 153-235 (298)
234 4e9f_A Methyl-CPG-binding doma 39.9 12 0.0004 34.0 1.9 19 283-301 103-121 (161)
235 4f4y_A POL IV, DNA polymerase 39.5 24 0.00082 35.9 4.5 53 245-307 181-235 (362)
236 3k4g_A DNA-directed RNA polyme 38.4 9.5 0.00033 31.1 1.0 41 291-331 18-60 (86)
237 3gfk_B DNA-directed RNA polyme 38.2 11 0.00036 30.4 1.2 43 290-332 21-65 (79)
238 2aq4_A DNA repair protein REV1 37.3 29 0.00098 36.2 4.7 56 245-308 243-301 (434)
239 2yg9_A DNA-3-methyladenine gly 35.3 34 0.0012 32.4 4.5 42 221-262 115-165 (225)
240 3s6i_A DNA-3-methyladenine gly 34.1 33 0.0011 32.7 4.2 42 221-262 107-158 (228)
241 3fsp_A A/G-specific adenine gl 33.3 18 0.00063 36.8 2.4 22 282-303 116-137 (369)
242 2csb_A Topoisomerase V, TOP61; 32.9 57 0.002 32.0 5.6 66 259-326 388-458 (519)
243 2ziu_A MUS81 protein; helix-ha 30.6 33 0.0011 33.9 3.7 59 243-303 237-303 (311)
244 1t94_A Polymerase (DNA directe 30.1 60 0.002 34.0 5.7 52 245-307 284-337 (459)
245 3pq1_A Poly(A) RNA polymerase; 30.0 57 0.0019 34.6 5.5 40 345-384 160-200 (464)
246 2kz3_A Putative uncharacterize 29.3 76 0.0026 25.5 4.9 52 289-350 9-60 (83)
247 3pkr_A FLIG, flagellar motor s 29.1 1.4E+02 0.0047 29.4 7.8 96 216-312 71-188 (279)
248 3fhf_A Mjogg, N-glycosylase/DN 28.6 31 0.001 32.7 2.9 21 242-262 123-144 (214)
249 2va8_A SSO2462, SKI2-type heli 28.3 2.7E+02 0.0091 30.3 10.9 49 243-302 657-705 (715)
250 3im1_A Protein SNU246, PRE-mRN 27.9 3.9E+02 0.013 26.2 11.2 52 243-302 157-208 (328)
251 3n0u_A Probable N-glycosylase/ 27.4 21 0.00072 33.9 1.5 21 242-262 128-149 (219)
252 2z43_A DNA repair and recombin 26.3 14 0.00048 36.7 0.0 47 286-332 14-62 (324)
253 3e1s_A Exodeoxyribonuclease V, 25.6 15 0.00051 39.9 0.0 45 288-332 15-61 (574)
254 2i5u_A DNAD domain protein; st 25.3 32 0.0011 27.3 2.0 19 294-312 64-82 (83)
255 1ci4_A Protein (barrier-TO-aut 25.1 32 0.0011 28.2 2.0 57 243-302 18-79 (89)
256 2kp7_A Crossover junction endo 24.6 42 0.0014 27.2 2.6 20 283-302 57-76 (87)
257 1coo_A RNA polymerase alpha su 24.3 52 0.0018 27.4 3.1 23 243-265 56-78 (98)
258 4ecq_A DNA polymerase ETA; tra 24.3 91 0.0031 32.4 5.8 54 245-307 255-310 (435)
259 3bbn_M Ribosomal protein S13; 23.2 8.2 0.00028 34.5 -2.1 21 285-305 63-84 (145)
260 3mfi_A DNA polymerase ETA; DNA 22.5 33 0.0011 36.8 2.1 19 245-263 309-327 (520)
261 3e1s_A Exodeoxyribonuclease V, 22.1 17 0.0006 39.4 -0.3 50 250-307 18-68 (574)
262 2i1q_A DNA repair and recombin 21.2 1.2E+02 0.0041 29.5 5.8 62 243-312 3-71 (322)
263 2jhn_A ALKA, 3-methyladenine D 21.0 38 0.0013 33.5 1.9 21 242-262 209-229 (295)
264 2zix_A Crossover junction endo 20.4 15 0.00053 36.4 -1.1 59 243-303 233-299 (307)
No 1
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=100.00 E-value=2.6e-83 Score=669.28 Aligned_cols=333 Identities=28% Similarity=0.513 Sum_probs=299.6
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCcc
Q 009742 159 PNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFK 238 (527)
Q Consensus 159 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~ 238 (527)
+++|+|||+ ||+ +++|++|+++|++||++|++.|+.+|++||++||++|+++|++
T Consensus 2 ~~~yaC~r~------~~~-------------------~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~ 56 (360)
T 2ihm_A 2 MPAYACQRP------SPL-------------------THHNTLLSEALETLAEAAGFEANEGRLLSFSRAASVLKSLPCP 56 (360)
T ss_dssp CCSSGGGSC------BCS-------------------SCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccccCCC------CCC-------------------CCCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCcc
Confidence 689999965 433 6789999999999999999999668999999999999999999
Q ss_pred ccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhc-cCc
Q 009742 239 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 317 (527)
Q Consensus 239 i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~-~~L 317 (527)
|++++++.+|||||+++|++|.||++||+++++|+|++++.+.++..|++|||||||||++||++||+||+||+.. ++|
T Consensus 57 i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~~~~~~L 136 (360)
T 2ihm_A 57 VASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRL 136 (360)
T ss_dssp CCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHTCCTTC
T ss_pred cCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhcccch
Confidence 9999999999999999999999999999999999999988888999999999999999999999999999999943 489
Q ss_pred chhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEecccccccCCccCCeeEEEecCCcchhhhhHHHHHH
Q 009742 318 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 397 (527)
Q Consensus 318 ~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRGke~~gDVDiLIt~~~~~~~~~~l~~lv~ 397 (527)
+..|++|++||+|+.++|||+||+++.++|.+.+..+.|++.|++||||||||++||||||||||+++..+.++|.+|++
T Consensus 137 ~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~~~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~ll~~v~~ 216 (360)
T 2ihm_A 137 TQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMS 216 (360)
T ss_dssp CHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHHTTCTTCEEEECHHHHTTCSEESEEEEEEECSSTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcCCCcEEEEccccccCCCccCCeEEEEecCChhhhhhHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999988999999999
Q ss_pred HHHHcCcccceeee-ccc---------cCCCCCCcceeeeeeeecCC--------------CccceeeeEEEecCchhHH
Q 009742 398 KLKEMKFLREDLIF-STH---------SEEGTDSGVDTYFGLCTYPG--------------RELRHRIDFKVYPRDIYAF 453 (527)
Q Consensus 398 ~L~~~g~l~~~l~~-s~~---------~~~~~~~~~~~~~g~~~~~~--------------~~~~~RVDl~v~p~~~f~~ 453 (527)
.|.+.|+|++.+.. ++. ... +...++++||+|++|+ .+.++||||++||+++||+
T Consensus 217 ~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~d~~~k~~~v~~lp~~~~~~~g~~~~~~~~~~~~rVDl~~vp~~~~g~ 295 (360)
T 2ihm_A 217 CLQSQGLVLYHQYHRSHLADSAHNLRQRSS-TMDVFERSFCILGLPQPQQAALAGALPPCPTWKAVRVDLVVTPSSQFPF 295 (360)
T ss_dssp HHHHTTCEEEEEEECCC----------------CCCCEEEEEEEEECC-------------CEEEEEEEEEECCTTSHHH
T ss_pred HHHhCCCeeeecchhhhhcccccccccccc-ccccccceeeEeecCccccccccccccccccCCceEEEEEEECHHHHHH
Confidence 99999999853321 111 001 1124568999999983 1246899999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHH-cCCccCCCCCcccccCCCCccccccccCCCCCCHHHHHHhcCCCCCCCCCcCC
Q 009742 454 GLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527 (527)
Q Consensus 454 aLl~~TGS~~fnr~LR~~A~~-kg~~L~~~GL~~~~~~~~g~~~~~~~~~~~~~tEedIF~~LGL~YipPe~Rn~ 527 (527)
||+|||||++|||+||++|++ |||+||+||||+... +..++++||+|||++|||||||||+||.
T Consensus 296 ALl~fTGS~~fnr~lR~~A~~~kG~~L~e~Gl~~~~~----------~~~i~~~~E~~If~~LGl~yipPe~Re~ 360 (360)
T 2ihm_A 296 ALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDPEQ----------KRVFHATSEEDVFRLLGLKYLPPEQRNA 360 (360)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHSCEECSSCEECSST----------TCCCCCSSHHHHHHHTTCCCCCGGGBCC
T ss_pred HHHHhhCCHHHHHHHHHHHHHhcCCCcCccccccCCC----------CccCCCCCHHHHHHHcCCCCCCccccCC
Confidence 999999999999999999985 999999999996431 3578999999999999999999999984
No 2
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=100.00 E-value=9.3e-83 Score=668.90 Aligned_cols=335 Identities=27% Similarity=0.458 Sum_probs=301.0
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Q 009742 157 EAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 236 (527)
Q Consensus 157 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~ 236 (527)
.++++|+|||+ ||+ +++|++|+++|++||++||+.|+.+|++||++||++|+++|
T Consensus 19 ~~~~~yaC~r~------~~~-------------------~~~N~~i~~~L~~ia~~~e~~g~~~rv~AYr~Aa~~l~~l~ 73 (381)
T 1jms_A 19 KKISQYACQRR------TTL-------------------NNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLP 73 (381)
T ss_dssp CCCCSCGGGSC------BCS-------------------CCTTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCS
T ss_pred ccccceeecCC------CCC-------------------CCCcHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHhCC
Confidence 45789999965 433 78999999999999999999996689999999999999999
Q ss_pred ccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhc--
Q 009742 237 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-- 314 (527)
Q Consensus 237 ~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~-- 314 (527)
++|+++.++.+|||||++||++|.||++||++++||++++++.+..+..|++|||||||||++||++||+||+||++.
T Consensus 74 ~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~~~g 153 (381)
T 1jms_A 74 FPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 153 (381)
T ss_dssp SCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHCSS
T ss_pred ccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHhCcc
Confidence 999999999999999999999999999999999999999988888999999999999999999999999999999952
Q ss_pred cCcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEecccccccCCccCCeeEEEecCCcchhhh--hH
Q 009742 315 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG--FL 392 (527)
Q Consensus 315 ~~L~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRGke~~gDVDiLIt~~~~~~~~~--~l 392 (527)
.+++..|++|++||+|+.++|||+||+++.++|.+.+..+.|++.|++||||||||++||||||||||+++..+.+ +|
T Consensus 154 ~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~~~ll 233 (381)
T 1jms_A 154 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLL 233 (381)
T ss_dssp CCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHHHCTTCEEEECHHHHTTCSCBSSEEEEEECTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcCCCcEEEEccccccCCCCcCCeEEEEeCCCccccchhhHH
Confidence 3799999999999999999999999999999999998889999999999999999999999999999999987777 99
Q ss_pred HHHHHHHHHcCcccceee-ecc--------ccCCCCCCcceeeeeeeecCCC--------------ccceeeeEEEecCc
Q 009742 393 SKYVKKLKEMKFLREDLI-FST--------HSEEGTDSGVDTYFGLCTYPGR--------------ELRHRIDFKVYPRD 449 (527)
Q Consensus 393 ~~lv~~L~~~g~l~~~l~-~s~--------~~~~~~~~~~~~~~g~~~~~~~--------------~~~~RVDl~v~p~~ 449 (527)
.+|++.|.+.|+|++.+. .+. +... ....++++||+|++|.. +.++||||++||++
T Consensus 234 ~~vv~~L~~~~~i~~~~~~~~~~~~~~lp~~~~~-~~~~~~k~~~i~~lp~~~~~~g~~~~~~~~~~~~~rVDl~~vp~~ 312 (381)
T 1jms_A 234 HKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVD-ALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYD 312 (381)
T ss_dssp HHHHHHHHHTTCEEEEEEECCCCCTTCCCCSSCC-SCCCCEEEEEEEEEEGGGCCSSCC---CCSSEEEEEEEEEECCGG
T ss_pred HHHHHHHHhCCCcccccccccccccccccccccc-ccccccceeeEeecCccccccccccccccCCCCceEEEEEEECHH
Confidence 999999999999975332 211 1111 12346789999988642 24689999999999
Q ss_pred hhHHHHHHhcccHHHHHHHHHHHHH-cCCccCCCCCcccccCCCCccccccccCCCCCCHHHHHHhcCCCCCCCCCcCC
Q 009742 450 IYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 527 (527)
Q Consensus 450 ~f~~aLl~~TGS~~fnr~LR~~A~~-kg~~L~~~GL~~~~~~~~g~~~~~~~~~~~~~tEedIF~~LGL~YipPe~Rn~ 527 (527)
+||+||+|||||++|||+||++|++ |||+||+||||+... +..+++.+|+|||++|||||||||+||.
T Consensus 313 ~~g~ALlyfTGS~~fnr~lR~~A~~~kG~kLne~GL~~~~~----------g~~i~~~sE~~If~~LGL~yipPe~Re~ 381 (381)
T 1jms_A 313 RRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDRTK----------RVFLEAESEEEIFAHLGLDYIEPWERNA 381 (381)
T ss_dssp GHHHHHHHHHCCHHHHHHHHHHHHHHHCEEECSSCEEETTT----------TEECCCSSHHHHHHHHTCCCCCGGGBCC
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCcchhhcccCCC----------CccCCCCCHHHHHHHcCCCCCChhhcCC
Confidence 9999999999999999999999986 999999999996431 3578999999999999999999999984
No 3
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=100.00 E-value=1.1e-82 Score=658.69 Aligned_cols=326 Identities=37% Similarity=0.672 Sum_probs=293.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHH
Q 009742 194 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 273 (527)
Q Consensus 194 ~~~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~ 273 (527)
+++|+|++|+++|++||++|++.|++||++||++||++|+++|++|++++++.+|||||+++|++|.||++||++.++|+
T Consensus 8 ~~~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~ 87 (335)
T 2bcq_A 8 KATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDH 87 (335)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGG
T ss_pred CCCCChHHHHHHHHHHHHHHHHcCccHhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhccCcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhh
Q 009742 274 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 353 (527)
Q Consensus 274 l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~~~~~ 353 (527)
|+.+. +++++|++|||||||||++||++||+||+||+++.+++..|++|++||+|+.++|||+||+++.+.|.+.+..
T Consensus 88 l~~~~--p~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~l~~ 165 (335)
T 2bcq_A 88 ISESV--PVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQA 165 (335)
T ss_dssp CCTTH--HHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHHHHT
T ss_pred Hhhhh--HHHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHh
Confidence 97654 4999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCCeEEEecccccccCCccCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeeeccccCCCCCCcceeeeeeeecC
Q 009742 354 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYP 433 (527)
Q Consensus 354 ~~p~~~v~~~GsyRRGke~~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g~l~~~l~~s~~~~~~~~~~~~~~~g~~~~~ 433 (527)
+.|++.+++||||||||++||||||||+|+++.++.++|.+|++.|.+.|+|++++..+.. . ....++|++|+++
T Consensus 166 ~~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~i~~~l~~~~~--~---g~~~k~~~v~~l~ 240 (335)
T 2bcq_A 166 FNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEE--N---GQQQKYLGVCRLP 240 (335)
T ss_dssp TCTTCEEEECHHHHTTCSEESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEECCTT--S---TTCCEEEEEECCS
T ss_pred cCCCcEEEEccccccCCCCCCCeEEEEecCCchhhhhHHHHHHHHHHhCCchHHHhhcccc--C---CCCceEEEEEEcc
Confidence 8999999999999999999999999999999998999999999999999999988753210 0 1146788999998
Q ss_pred CCc-cceeeeEEEecCchhHHHHHHhcccHHHHHHHHHHHHHcCCccCCCCCcccccCC-CCccccccccCCCCCCHHHH
Q 009742 434 GRE-LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS-GGKQGVRARTSLKFDTEKEV 511 (527)
Q Consensus 434 ~~~-~~~RVDl~v~p~~~f~~aLl~~TGS~~fnr~LR~~A~~kg~~L~~~GL~~~~~~~-~g~~~~~~~~~~~~~tEedI 511 (527)
+.. .++||||++||+++||+||+|||||++|||+||++|+++||+||+||||+.+.+. +|.+ ...+..+++.+|++|
T Consensus 241 ~~~~~~~rVDl~~vp~~~~g~ALl~fTGS~~fnr~lR~~A~~~G~kL~e~Gl~~~~~r~~~~~~-~~~~~~~~~~~E~~I 319 (335)
T 2bcq_A 241 GPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCK-VGPGRVLPTPTEKDV 319 (335)
T ss_dssp STTCCCEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTCEECSSCEEESCEECTTSCE-EECCEECCCSSHHHH
T ss_pred CCCCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcccccccccccccccccc-ccCCCcCCCCCHHHH
Confidence 642 4689999999999999999999999999999999999999999999999743221 1211 112457899999999
Q ss_pred HHhcCCCCCCCCCcCC
Q 009742 512 FDFLGFPWLEPHERNL 527 (527)
Q Consensus 512 F~~LGL~YipPe~Rn~ 527 (527)
|++|||||||||+||+
T Consensus 320 f~~LGl~yipPe~Rn~ 335 (335)
T 2bcq_A 320 FRLLGLPYREPAERDW 335 (335)
T ss_dssp HHHTTCCCCCGGGGCC
T ss_pred HHHcCCCCcCccccCc
Confidence 9999999999999996
No 4
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=100.00 E-value=1.6e-79 Score=635.39 Aligned_cols=315 Identities=36% Similarity=0.684 Sum_probs=291.3
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 009742 197 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 275 (527)
Q Consensus 197 ~~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 275 (527)
.+|++|+++|++||++|++.++| +|++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++++||+++
T Consensus 10 ~~N~~i~~~L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2fmp_A 10 TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIR 89 (335)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHH
Confidence 37999999999999999998888 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhh-ccCcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhc
Q 009742 276 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 354 (527)
Q Consensus 276 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~-~~~L~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~~~~~~ 354 (527)
+++.+..+..|++|||||||||++||++||+||+||++ +++|+..|++|++||+|+.++|||+||+++.+.|.+.+..+
T Consensus 90 ~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~~ 169 (335)
T 2fmp_A 90 QDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKV 169 (335)
T ss_dssp HCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHhc
Confidence 99878899999999999999999999999999999997 67899999999999999999999999999999999998888
Q ss_pred CCCeEEEecccccccCCccCCeeEEEecCCcchhh----hhHHHHHHHHHHcCcccceeeeccccCCCCCCcceeeeeee
Q 009742 355 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 430 (527)
Q Consensus 355 ~p~~~v~~~GsyRRGke~~gDVDiLIt~~~~~~~~----~~l~~lv~~L~~~g~l~~~l~~s~~~~~~~~~~~~~~~g~~ 430 (527)
.|++.+++||||||||++||||||||+|++..++. +++.+|++.|.+.|++++++..+ ..+++|+|
T Consensus 170 ~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g----------~~k~~~v~ 239 (335)
T 2fmp_A 170 DSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKG----------ETKFMGVC 239 (335)
T ss_dssp CTTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEEC----------SSEEEEEE
T ss_pred CCCcEEEeccccccccCccCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecC----------CceEEEEE
Confidence 99999999999999999999999999999876655 78999999999999999887542 13789999
Q ss_pred ecCCCc-----cceeeeEEEecCchhHHHHHHhcccHHHHHHHHHHHHHcCCccCCCCCcccccCCCCccccccccCCCC
Q 009742 431 TYPGRE-----LRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 505 (527)
Q Consensus 431 ~~~~~~-----~~~RVDl~v~p~~~f~~aLl~~TGS~~fnr~LR~~A~~kg~~L~~~GL~~~~~~~~g~~~~~~~~~~~~ 505 (527)
++++.. .++||||++||+++||+||+|||||++|||+||++|+++||+||+||||+... +|. .+..+++
T Consensus 240 ~l~~~~~~~~~~~~rVDl~~vp~~~~~~aLl~fTGS~~fnr~lR~~A~~kG~kl~e~Gl~~~~~--~~~----~g~~~~~ 313 (335)
T 2fmp_A 240 QLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGV--TGV----AGEPLPV 313 (335)
T ss_dssp CCCCCTTCCCCCCEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTEEECSSCEEECCT--TCC----CCCCCCC
T ss_pred EeCCcccccCCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCcccccccccccc--ccc----CCCccCC
Confidence 998632 36899999999999999999999999999999999999999999999997532 222 2357899
Q ss_pred CCHHHHHHhcCCCCCCCCCcCC
Q 009742 506 DTEKEVFDFLGFPWLEPHERNL 527 (527)
Q Consensus 506 ~tEedIF~~LGL~YipPe~Rn~ 527 (527)
.||+|||++|||||||||+||+
T Consensus 314 ~~E~~If~~LGl~yipPe~Re~ 335 (335)
T 2fmp_A 314 DSEKDIFDYIQWKYREPKDRSE 335 (335)
T ss_dssp CSHHHHHHHTTCCCCCGGGCCC
T ss_pred CCHHHHHHHcCCCCCCccccCC
Confidence 9999999999999999999995
No 5
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=100.00 E-value=6.3e-62 Score=537.37 Aligned_cols=295 Identities=29% Similarity=0.417 Sum_probs=261.8
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh-----hcCCCCCCHHHHHHHHHHHHhCCchh
Q 009742 197 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIGKSMQDHIQEIVTTGKLSK 270 (527)
Q Consensus 197 ~~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~-----l~~lpgIG~~ia~kI~Eil~tG~~~~ 270 (527)
|+|++|+++|++||++||++|+| ||++||+|||++|+++|++|+++.+ +..|||||++++.+|.|+++||.+..
T Consensus 1 ~~N~~i~~~l~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l 80 (575)
T 3b0x_A 1 MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK 80 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHH
Confidence 67999999999999999999999 8999999999999999999999976 99999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh-CCCCHHHHhhc---cCcchhhhc----------cccchhhhccCcC
Q 009742 271 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE---DSLTHSQRL----------GLKYFDDIKTRIP 336 (527)
Q Consensus 271 le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~---~~L~~~q~~----------Glk~yed~~~~i~ 336 (527)
++.+..+++. .+.+|++|+|||||||.+||.. |++|++||+++ +.|++++++ ||++|+++.++||
T Consensus 81 ~~~~~~~~~~-~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~ 159 (575)
T 3b0x_A 81 HEELSRKVPR-GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRP 159 (575)
T ss_dssp HHHHHHHSCH-HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HhhhhhhhHH-HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHhcccee
Confidence 9999988765 5677779999999999999997 99999999964 457665555 6999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEecccccccCCccCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeeeccccC
Q 009742 337 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416 (527)
Q Consensus 337 r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRGke~~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g~l~~~l~~s~~~~ 416 (527)
|+||+++.+.|.+.+..+.|.+.+++||||||||++||||||||+|+++.. +++.|.+.+++.+.+...
T Consensus 160 ~~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~~gDiD~li~~~~~~~-------v~~~l~~~~~~~~~~~~g---- 228 (575)
T 3b0x_A 160 LGAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGER-------AVEGFVRLPQVKEVYAKG---- 228 (575)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSEESSEEEEEECSSHHH-------HHHHHHTSTTEEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCccCCeEEEEeCCCHHH-------HHHHHHhCcchhhHhhcC----
Confidence 999999999998888877777899999999999999999999999998763 677888889888765321
Q ss_pred CCCCCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHhcccHHHHHHHHHHHHHcCCccCCCCCcccccCCCCccc
Q 009742 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 496 (527)
Q Consensus 417 ~~~~~~~~~~~g~~~~~~~~~~~RVDl~v~p~~~f~~aLl~~TGS~~fnr~LR~~A~~kg~~L~~~GL~~~~~~~~g~~~ 496 (527)
+ .++.. +++. ++||||++||+++||+||+|||||++|||+||++|+++||+||+||||+..
T Consensus 229 ---~---~k~~~--~~~~---~~rvDl~~~~~~~~~~al~~~TGs~~~n~~lR~~A~~~g~~l~~~gl~~~~-------- 289 (575)
T 3b0x_A 229 ---K---ERATV--FLKN---GLQVDLRVVPPESYGAGLQYLTGSAAHSIRLRALAQEKGLKLSEYGVFRGE-------- 289 (575)
T ss_dssp ---S---SEEEE--EETT---SCEEEEEEECGGGHHHHHHHHHCCHHHHHHHHHHHHHTTCEEETTEEEETT--------
T ss_pred ---C---CceEE--EccC---CcEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcchhhccCCC--------
Confidence 1 12222 2322 479999999999999999999999999999999999999999999999421
Q ss_pred cccccCCCCCCHHHHHHhcCCCCCCCCCcC
Q 009742 497 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 526 (527)
Q Consensus 497 ~~~~~~~~~~tEedIF~~LGL~YipPe~Rn 526 (527)
..++++||++||+.+||+||||++|+
T Consensus 290 ----~~~~~~~E~~if~~lgl~~i~p~~R~ 315 (575)
T 3b0x_A 290 ----KRIAGETEEEVYAALGLPWIPPPLRE 315 (575)
T ss_dssp ----EEEECSSHHHHHHHTTCCCCCGGGCS
T ss_pred ----cccCCCCHHHHHHHcCCCCCCHHHcC
Confidence 16889999999999999999999997
No 6
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=100.00 E-value=5.2e-59 Score=514.20 Aligned_cols=282 Identities=18% Similarity=0.274 Sum_probs=237.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh--hcCCCCCCHHHHHHHHHHHHhCCchhhH
Q 009742 196 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLE 272 (527)
Q Consensus 196 ~~~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~--l~~lpgIG~~ia~kI~Eil~tG~~~~le 272 (527)
.++|++|+++|++||+++++.|+| +|++||++||++|+++|.+|+++.+ +..|||||++++.+|.|++++|.+..++
T Consensus 7 ~~~N~~i~~~l~~~a~~~e~~g~~~~r~~ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~ 86 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFKSRAYRSAARSLEELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLE 86 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCSHHHHHHHHHHHHSCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHH
Confidence 457999999999999999999988 7999999999999999999999977 9999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhc---cCcch--------hhhc--cccchhhhccCcCHHH
Q 009742 273 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTH--------SQRL--GLKYFDDIKTRIPRHE 339 (527)
Q Consensus 273 ~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~---~~L~~--------~q~~--Glk~yed~~~~i~r~E 339 (527)
.+..+++. .+..|++|+|||||||++||+.||+|++||+++ ++|+. +|++ |+++|+++.++|||+|
T Consensus 87 ~~~~~~~~-~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e 165 (578)
T 2w9m_A 87 AAAGQLPP-GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRA 165 (578)
T ss_dssp HHHHHSCH-HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHH
T ss_pred HHhhhhHH-HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHH
Confidence 99988866 666677999999999999999999999999964 57877 6666 8999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEecccccccCCccCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeeeccccCCCC
Q 009742 340 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 419 (527)
Q Consensus 340 a~~i~~iv~~~~~~~~p~~~v~~~GsyRRGke~~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g~l~~~l~~s~~~~~~~ 419 (527)
|+++.+.|.+.+..+ + +++||||||||++||||||||++ ++.. | |.+.++++ . ..
T Consensus 166 ~~~~~~~i~~~l~~~-~---~~~~Gs~RR~~e~~gDiD~li~~-~~~~-------v---l~~~~~v~---~-----~g-- 220 (578)
T 2w9m_A 166 GLAVAEELAGALTDL-S---PAPAGDVRRGLETVRAAELTVTG-TPDD-------V---LARLPELT---V-----QG-- 220 (578)
T ss_dssp HHHHHHHHHHHTGGG-C---CEECHHHHHTCSEESSEEEEEES-CHHH-------H---HHHCTTCE---E-----C---
T ss_pred HHHHHHHHHHHHHhC-C---CEEecccccCCCccCCEEEEEec-ChHH-------H---HhcCccce---e-----cC--
Confidence 999999888887654 3 88999999999999999999999 7653 1 56677765 1 01
Q ss_pred CCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHhcccHHHH-HHHHHHHHHcCCccCCCCCcccccCCCCccccc
Q 009742 420 DSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLN-RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 498 (527)
Q Consensus 420 ~~~~~~~~g~~~~~~~~~~~RVDl~v~p~~~f~~aLl~~TGS~~fn-r~LR~~A~~kg~~L~~~GL~~~~~~~~g~~~~~ 498 (527)
+ .++++. ++ ++||||++||+++||+||+|||| .|| |+||++|++|||+||+||||+..
T Consensus 221 ~---~k~~~~--~~----~~~vDl~~~~~~~~~~al~~~TG--~~n~~~lr~~A~~~g~~l~~~gl~~~~---------- 279 (578)
T 2w9m_A 221 D---GVLSGD--YE----GVPVEIACAPAEARGALDLLRSG--EHFAGQVQAAAQARGFTLTAGGLSRGD---------- 279 (578)
T ss_dssp -----CEEEE--ET----TEEEEEEEECTTTHHHHHHHTSC--HHHHHHHHHHHHTTTCEEETTEEEETT----------
T ss_pred C---ceEEEE--EC----CEEEEEEEECHHHHHHHHHHHhh--hhHHHHHHHHHHHcCCCcChhhccCCC----------
Confidence 1 134443 32 37999999999999999999999 888 99999999999999999999421
Q ss_pred cccCCCCCCHHHHHHhcCCCCCCCCCcC
Q 009742 499 ARTSLKFDTEKEVFDFLGFPWLEPHERN 526 (527)
Q Consensus 499 ~~~~~~~~tEedIF~~LGL~YipPe~Rn 526 (527)
..++++||++||++|||||||||+||
T Consensus 280 --~~~~~~~E~~if~~lgl~~i~Pe~Re 305 (578)
T 2w9m_A 280 --EVLPTPTEAVVFHALDLPFRPAEYRE 305 (578)
T ss_dssp --EEECCCSHHHHHHHTTCCCCCGGGCS
T ss_pred --ccCCCCCHHHHHHHcCCCCCChhhcC
Confidence 16889999999999999999999998
No 7
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=100.00 E-value=6.1e-42 Score=322.29 Aligned_cols=166 Identities=23% Similarity=0.340 Sum_probs=138.9
Q ss_pred ccccchhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEecccccccCCccCCeeEEEecCCcchhhhhHHHHHHHHHH-
Q 009742 323 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE- 401 (527)
Q Consensus 323 ~Glk~yed~~~~i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRGke~~gDVDiLIt~~~~~~~~~~l~~lv~~L~~- 401 (527)
+|+++++++.+++.++.+.++ |+ .||+.+++||||||||++||||||||+|+++. .+++.|.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~---ik------~~g~~v~iaGS~RRgket~gDiDiLit~~~~~-------~v~~~L~~~ 69 (174)
T 1jaj_A 6 QGKKIVNHLRSRLAFEYNGQL---IK------ILSKNIVAVGSLRREEKMLNDVDLLIIVPEKK-------LLKHVLPNI 69 (174)
T ss_dssp HHHHHHHHHHHSEEEEETTEE---EE------ECTTTEEEEEHHHHTCSEECCEEEEEEESSHH-------HHHTSSSEE
T ss_pred hHHHHHHHHHhhhhHHhhccc---cc------CCCcEEEEeccccCCCCCCCCEEEEEecCCHH-------HHHHHHHhc
Confidence 689999999999998777543 11 58999999999999999999999999999854 46788888
Q ss_pred -cCccc-ceeeeccccCCCCCCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHhcccHHHHHHHHHHHHHcCCcc
Q 009742 402 -MKFLR-EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 479 (527)
Q Consensus 402 -~g~l~-~~l~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~RVDl~v~p~~~f~~aLl~~TGS~~fnr~LR~~A~~kg~~L 479 (527)
.++++ +.+..+ + .++++ ++++...++||||+++|+++|++||+|||||++||++||++|+++||+|
T Consensus 70 ~~~~v~~~~l~~g-------~---~k~~~--~l~~~~~~~rVDl~~vp~~~fg~ALl~fTGSk~hn~~lR~~A~~kG~~L 137 (174)
T 1jaj_A 70 RIKGLSFSVKVCG-------E---RKCVL--FIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKL 137 (174)
T ss_dssp EESSCEEEEEEET-------T---TEEEE--EEESSSCCEEEEEEEEETTCHHHHHHHHHSCHHHHHHHHHHHHHTTEEE
T ss_pred cCCceeHhHeecC-------C---CeEEE--EeCCCCCceEEEEEEeCHHHHHHHHHHhHCCHHHHHHHHHHHHHcCCCc
Confidence 89988 765322 1 13444 3443224689999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCccccccccCCCCCCHHHHHHhcCCCCCCCCCcC
Q 009742 480 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 526 (527)
Q Consensus 480 ~~~GL~~~~~~~~g~~~~~~~~~~~~~tEedIF~~LGL~YipPe~Rn 526 (527)
|+||||+.. .+..+++++|+|||++|||||||||+|.
T Consensus 138 ~e~Gl~~~~----------~g~~i~~~sE~~If~~LGL~yipPelR~ 174 (174)
T 1jaj_A 138 NQYGLFKNQ----------TLVPLKITTEKELIKELGFTYRIPKKRL 174 (174)
T ss_dssp ETTEEEETT----------EEECCCCSSHHHHHHHHTSCCCCGGGCC
T ss_pred CccccccCC----------CCcccCCCCHHHHHHHcCCCCcCccccC
Confidence 999999532 1247899999999999999999999994
No 8
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=99.95 E-value=2.1e-28 Score=217.67 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=78.5
Q ss_pred CCCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHH-----HH--Hh----------cc
Q 009742 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA-----LL--QQ----------SV 74 (527)
Q Consensus 12 ~~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~-----~l--~~----------~v 74 (527)
.+.++.+|+|++|||||.+||++|++||+++|++|||+|++.+|++|||||++|+++ || +. .|
T Consensus 4 ~~~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 4 GSSGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CCCSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEE
T ss_pred CCCCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEE
Confidence 357789999999999999999999999999999999999999999999999988654 66 32 39
Q ss_pred ccchHHHHHHhcCCCcCCccccccc
Q 009742 75 IRYQWLEDSLRLGEKVSEDLYRIKL 99 (527)
Q Consensus 75 v~~~Wl~ec~~~g~~v~~~~~~l~~ 99 (527)
|+++||+|||++|+|||+++|++..
T Consensus 84 LdisWltecm~~g~pV~~e~~~~l~ 108 (133)
T 2dun_A 84 LDISWLTESLGAGQPVPVECRHRLE 108 (133)
T ss_dssp EEHHHHHHHHHHTSCCCCCTTTSCC
T ss_pred eccHHHHHHHhcCCcCCcccceEee
Confidence 9999999999999999986665543
No 9
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=176.39 Aligned_cols=91 Identities=23% Similarity=0.323 Sum_probs=79.4
Q ss_pred CCCCCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHH-----HHH-----h----ccc
Q 009742 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA-----LLQ-----Q----SVI 75 (527)
Q Consensus 10 ~~~~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~-----~l~-----~----~vv 75 (527)
.+++++..+|+|++|||++.+||++|++||++++++|||+|++.++++|||||++|+++ |++ . .||
T Consensus 12 ~~~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv 91 (120)
T 2coe_A 12 MASSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELL 91 (120)
T ss_dssp SSSCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEE
T ss_pred CCCCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEe
Confidence 45788899999999999999999999999999999999999999999999999987543 444 1 299
Q ss_pred cchHHHHHHhcCCCcCCcc-cccccC
Q 009742 76 RYQWLEDSLRLGEKVSEDL-YRIKLD 100 (527)
Q Consensus 76 ~~~Wl~ec~~~g~~v~~~~-~~l~~~ 100 (527)
+++||+|||++|+|||+++ |.|.++
T Consensus 92 ~i~Wl~esmk~g~lv~ee~~~~l~~~ 117 (120)
T 2coe_A 92 DVSWLIECIGAGKPVEMTGKHQLSGP 117 (120)
T ss_dssp EHHHHHHHHHTTSCCCCSSSSBCCCS
T ss_pred ecHHHHHHHHcCCccCcccceEeccC
Confidence 9999999999999999855 555443
No 10
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-18 Score=148.41 Aligned_cols=88 Identities=20% Similarity=0.397 Sum_probs=77.8
Q ss_pred CCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeC-c--HH---HHHh-------ccccchH
Q 009742 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD-L--EA---LLQQ-------SVIRYQW 79 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~-~--~~---~l~~-------~vv~~~W 79 (527)
..+..+|+|+++||+|.+|+.+|++++.++++++||+|++.++++|||||+.+ . +. +|+. .||+++|
T Consensus 6 ~~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~W 85 (106)
T 2jw5_A 6 EEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAW 85 (106)
T ss_dssp CCGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHH
T ss_pred ccCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCch
Confidence 44678999999999999999999999999999999999999999999999974 2 23 2332 2999999
Q ss_pred HHHHHhcCCCcCCcccccccC
Q 009742 80 LEDSLRLGEKVSEDLYRIKLD 100 (527)
Q Consensus 80 l~ec~~~g~~v~~~~~~l~~~ 100 (527)
++|||++|++||+++|.+.+|
T Consensus 86 v~dci~~~~llde~~y~~~~~ 106 (106)
T 2jw5_A 86 LSLCLQERRLVDVAGFSIFIP 106 (106)
T ss_dssp HHHHHHTCSCCCGGGTBCSCC
T ss_pred HHHHHhcCcccCcccccccCC
Confidence 999999999999999998764
No 11
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=99.54 E-value=2.8e-17 Score=161.99 Aligned_cols=179 Identities=18% Similarity=0.142 Sum_probs=72.0
Q ss_pred HHHhhccCcCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhccC-------------cC-HHHHHHHHHHH
Q 009742 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTR-------------IP-RHEVEQMERLL 347 (527)
Q Consensus 284 ~lf~~I~GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~yed~~~~-------------i~-r~Ea~~i~~iv 347 (527)
..|.+|+||||++|+.|++.||.|+++|..+ ..|....++|.+..+.|... ++ ..++..+.+-|
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~~~~r~~~~~~~~~a~~~a~~i 94 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGGLEVESETEAEVEEEGGEEAPDEDV 94 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 3455999999999999999999999999754 36888899997777776543 33 44444432222
Q ss_pred HHHhhhcCCC-e-EEEecccccccC---------CccC-CeeEEE----ecCCcchhhhhHHHHHHHHHHcCcccceeee
Q 009742 348 QKAGEEVLPE-V-IILCGGSYRRGK---------ASCG-DLDVVI----MHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 411 (527)
Q Consensus 348 ~~~~~~~~p~-~-~v~~~GsyRRGk---------e~~g-DVDiLI----t~~~~~~~~~~l~~lv~~L~~~g~l~~~l~~ 411 (527)
..... -.|+ + .++++||+||.+ ++++ |+|+++ +...+.- .-.++...++..+.+....-.
T Consensus 95 ~~~l~-~~~~~~~~~~~ags~RR~~~~~~~~~~~efvr~d~d~~~~~~~~wrkP~g---~d~~vr~~f~g~~~~~~ig~~ 170 (241)
T 1vq8_Y 95 ETELQ-ARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRG---QLSKQRRGIKGKGDTVEAGFR 170 (241)
T ss_dssp -CCEE-ECSCTTCCCCCCHHHHHHHHHHHHHCCCCCCCTTGGGCTTSCSSCCCCCC---TTCTTTTTCTTSCCCCCGGGC
T ss_pred HHHHH-hCCCCcCceecChHHHHHHHHhcccCCCCeeccchhheeecccCcCCCCC---ccHHHHHHHhCCCCCCccccC
Confidence 22222 2455 3 688999999999 9999 999999 5444431 111122223222222211110
Q ss_pred ccccCCCCCCcceeeeeeeecCCCccceee-------eEEEecCchhHHHHHHhcccHHHHHHHHHHHHHcCCccCCC
Q 009742 412 STHSEEGTDSGVDTYFGLCTYPGRELRHRI-------DFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 482 (527)
Q Consensus 412 s~~~~~~~~~~~~~~~g~~~~~~~~~~~RV-------Dl~v~p~~~f~~aLl~~TGS~~fnr~LR~~A~~kg~~L~~~ 482 (527)
+ ..... ++ +|. +.++ ||.+++++.|+++|.|||||+.|+ .|+..|.++|+++.+-
T Consensus 171 s-----~~k~r-----~~--lp~---G~~~~~v~n~~dL~~l~~~~~~a~i~~~tGskkh~-~i~~~A~~~gikv~n~ 232 (241)
T 1vq8_Y 171 S-----PTAVR-----GK--HPS---GFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRE-RIEEEAEDAGIRVLNP 232 (241)
T ss_dssp C-----CTTTT-----TC--CTT---SCEEEEESSGGGGTTCCTTTEEEEECTTSCHHHHH-HHHHHHHHTTCCBSSC
T ss_pred C-----CCceE-----EE--CCC---CCEeeeccCHhHhhccCcHHHHHHHHHHhccHhHH-HHHHHHHHcCCcccCC
Confidence 0 00110 11 121 2366 999999999999999999999999 9999999999998553
No 12
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.44 E-value=2.2e-13 Score=122.46 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=71.8
Q ss_pred CCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHH----HHH-----hccccchHHHHH
Q 009742 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA----LLQ-----QSVIRYQWLEDS 83 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~----~l~-----~~vv~~~Wl~ec 83 (527)
..+..+|+|++|||. |....+++.|+++++.+||+|...+++.|||||+.+... +++ ..+|+++|+.+|
T Consensus 35 ~~~~~lF~g~~i~i~--G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~~~~~~~~iV~~~Wv~ds 112 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLC--GFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLEC 112 (132)
T ss_dssp CCCTTTTTTCEEEEE--SCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred cccccccCCEEEEEE--CCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHHhhCCCCeEechHHHHHH
Confidence 445689999999997 667788999999999999999999999999999976322 222 139999999999
Q ss_pred HhcCCCcCCcccccc
Q 009742 84 LRLGEKVSEDLYRIK 98 (527)
Q Consensus 84 ~~~g~~v~~~~~~l~ 98 (527)
+++|++||+++|.+.
T Consensus 113 i~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 113 FSKGYMLSEEPYIHS 127 (132)
T ss_dssp HHHSSCCCSGGGBCC
T ss_pred HHcCCcCCHhhccCC
Confidence 999999999999764
No 13
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.41 E-value=3.1e-13 Score=114.49 Aligned_cols=86 Identities=26% Similarity=0.461 Sum_probs=71.2
Q ss_pred CCCCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecC-CCccEEEEeCc-HHHHHh----ccccchHHHHHH
Q 009742 11 PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDL-EALLQQ----SVIRYQWLEDSL 84 (527)
Q Consensus 11 ~~~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s-~~VTHVV~~~~-~~~l~~----~vv~~~Wl~ec~ 84 (527)
...+...+|+|+++||. |.....++.|+++++++||++...++ ..|||||+.+. ..+++. .+|+++||.||+
T Consensus 5 ~~~~~~~lF~g~~~~is--g~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~~~~iV~p~Wl~dci 82 (97)
T 2ebw_A 5 SSGTSSTIFSGVAIYVN--GYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESI 82 (97)
T ss_dssp CCSCCCCTTTTCEEEEC--SSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTSSSCCBCTHHHHHHH
T ss_pred cCCCCCCCCCCeEEEEe--CCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhcCCCEeChHHHHHHH
Confidence 34566789999999984 55555679999999999999998776 68999999865 233333 399999999999
Q ss_pred hcCCCcCCcccccc
Q 009742 85 RLGEKVSEDLYRIK 98 (527)
Q Consensus 85 ~~g~~v~~~~~~l~ 98 (527)
++|+++|+++|.|.
T Consensus 83 ~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 83 KAGRLLSYIPYQLY 96 (97)
T ss_dssp HHTSCCCSGGGBSC
T ss_pred HcCCccCchHcEec
Confidence 99999999999874
No 14
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.40 E-value=5e-13 Score=116.00 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=71.1
Q ss_pred CCcCCeEEEE-eeCCCCh-hHHHHHHHHHHhcCCEEEeecCCCccEEEEeCc-HHHHHh------ccccchHHHHHHhcC
Q 009742 17 GIFAGMRVFL-VEKGVQN-RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EALLQQ------SVIRYQWLEDSLRLG 87 (527)
Q Consensus 17 ~~f~~~~i~i-v~~~~g~-~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~-~~~l~~------~vv~~~Wl~ec~~~g 87 (527)
.+|+|++||| +....|. .|.+.|.++++++|++|...++.+|||||+.+. ...++. .||++.||.+|+++|
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~~ 85 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTAG 85 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHhC
Confidence 4999999999 4445675 477899999999999999999999999998653 233331 399999999999999
Q ss_pred CCcCCcccccccCC
Q 009742 88 EKVSEDLYRIKLDP 101 (527)
Q Consensus 88 ~~v~~~~~~l~~~~ 101 (527)
+.|||++|.+..++
T Consensus 86 ~~vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 86 AHIDESLFPAANMN 99 (107)
T ss_dssp SCCCGGGSBCCCTT
T ss_pred ccCChhcccCCCCc
Confidence 99999999986543
No 15
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=6.3e-13 Score=110.98 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=66.5
Q ss_pred CCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecC--CCccEEEEeCcH-HHHHh----ccccchHHHHHHh
Q 009742 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS--KKVTHVLAMDLE-ALLQQ----SVIRYQWLEDSLR 85 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s--~~VTHVV~~~~~-~~l~~----~vv~~~Wl~ec~~ 85 (527)
.+...+|+|+++||. |.....+..|+++++++||++...++ ++|||||+.+.. .+++. .+|+++||.+|++
T Consensus 2 ~~~~~~f~g~~~~i~--g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~~~~~iV~~~Wi~dci~ 79 (92)
T 4id3_A 2 SQSSKIFKNCVIYIN--GYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEFANYKVVSPDWIVDSVK 79 (92)
T ss_dssp ----CTTTTCEEEEC--SCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHTTTSCEECTHHHHHHHH
T ss_pred CccccccCCEEEEEe--CCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHcCCCCEEcccHHHHHHH
Confidence 456789999999995 53334467899999999999999999 899999987642 23222 3999999999999
Q ss_pred cCCCcCCccccc
Q 009742 86 LGEKVSEDLYRI 97 (527)
Q Consensus 86 ~g~~v~~~~~~l 97 (527)
+|+++|+++|.|
T Consensus 80 ~~~~l~e~~Y~l 91 (92)
T 4id3_A 80 EARLLPWQNYSL 91 (92)
T ss_dssp HTSCCCGGGGBC
T ss_pred cCCcCChhhccc
Confidence 999999999987
No 16
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.30 E-value=3.7e-12 Score=110.04 Aligned_cols=85 Identities=14% Similarity=0.233 Sum_probs=68.6
Q ss_pred CCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCc----HHHHHh------ccccchHHHHH
Q 009742 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL----EALLQQ------SVIRYQWLEDS 83 (527)
Q Consensus 14 ~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~----~~~l~~------~vv~~~Wl~ec 83 (527)
.....|.|++|+|. |.-...+..|+++|.++||+|...++++|||||+... ..+++. .||+.+||.+|
T Consensus 11 ~~~~~l~g~~i~is--g~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 11 EAPKPLHKVVVCVS--KKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp ---CTTTTCEEEEC--GGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred cccCCCCCeEEEEe--CCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHH
Confidence 34578999999994 5544678999999999999999999999999999421 122221 39999999999
Q ss_pred HhcCCCcCCcccccccC
Q 009742 84 LRLGEKVSEDLYRIKLD 100 (527)
Q Consensus 84 ~~~g~~v~~~~~~l~~~ 100 (527)
+++|++||+++|.+...
T Consensus 89 ~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 89 AQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHTSCCCGGGCCTTCC
T ss_pred HHhCCCCchhhCCCCCC
Confidence 99999999999998654
No 17
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=111.12 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=72.2
Q ss_pred CCCCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH-HHHH------hccccchHHHHH
Q 009742 11 PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-ALLQ------QSVIRYQWLEDS 83 (527)
Q Consensus 11 ~~~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~-~~l~------~~vv~~~Wl~ec 83 (527)
...+....|.|++|+|. |.-...+..|+++|.++||+|...++++|||||+.+.. .+++ ..||+.+||.+|
T Consensus 15 ~~~~~~~~f~g~~i~it--G~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~ 92 (129)
T 2d8m_A 15 GPEELGKILQGVVVVLS--GFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDC 92 (129)
T ss_dssp CHHHHTTTSTTEEEEEE--SCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHH
T ss_pred cCCCccccCCCeEEEEe--CCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHH
Confidence 34445578999999994 55555678999999999999999999999999997632 2222 239999999999
Q ss_pred HhcCCCcCCcccccccC
Q 009742 84 LRLGEKVSEDLYRIKLD 100 (527)
Q Consensus 84 ~~~g~~v~~~~~~l~~~ 100 (527)
+++|++|++++|.|..+
T Consensus 93 ~~~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 93 HRMRRRLPSQRYLMAGP 109 (129)
T ss_dssp HHTTSCCCGGGGBCSSS
T ss_pred HHhCCcCChHhcccCCC
Confidence 99999999999999754
No 18
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.19 E-value=3.3e-11 Score=103.93 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCc-HH----HHHh----ccccchHHHHHHhcC
Q 009742 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EA----LLQQ----SVIRYQWLEDSLRLG 87 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~-~~----~l~~----~vv~~~Wl~ec~~~g 87 (527)
.+|.|+++||-.... ...+..|.+.+...||.|++.++++|||||+.+. .. +++. -+|.++|+.+|++.+
T Consensus 6 d~F~g~~f~l~~~~p-~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~ 84 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFP-GDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQ 84 (104)
T ss_dssp CTTTTCEEEEESCCS-TTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHT
T ss_pred hhhCCeEEEEcCCCc-HHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcC
Confidence 589999999964332 4567899999999999999999999999999863 22 2221 299999999999999
Q ss_pred CCcCCccccccc
Q 009742 88 EKVSEDLYRIKL 99 (527)
Q Consensus 88 ~~v~~~~~~l~~ 99 (527)
++||+++|.+..
T Consensus 85 klvp~~~y~~~~ 96 (104)
T 3pc6_A 85 KLLPHQLYGVVP 96 (104)
T ss_dssp SCCCGGGGBCCC
T ss_pred ccCCcccceecc
Confidence 999999999964
No 19
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.14 E-value=2e-11 Score=106.04 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=69.8
Q ss_pred CCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHH-HHHh------ccccchHHHHHHhcCCC
Q 009742 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA-LLQQ------SVIRYQWLEDSLRLGEK 89 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~-~l~~------~vv~~~Wl~ec~~~g~~ 89 (527)
..|.|++|++ .|+....+..|++++..+||.+...++++|||||+.+... +++. .||+.+||.+|++.|++
T Consensus 11 ~~F~g~~i~~--sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~~ 88 (109)
T 2cou_A 11 PPFQDCILSF--LGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDAR 88 (109)
T ss_dssp CTTTTCBEEE--ESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTSC
T ss_pred CcCCCeEEEe--cCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCCc
Confidence 5899999999 5788888899999999999999999999999999976432 2222 39999999999999999
Q ss_pred cCCcccccc
Q 009742 90 VSEDLYRIK 98 (527)
Q Consensus 90 v~~~~~~l~ 98 (527)
++|..|.+.
T Consensus 89 ldE~~Y~~~ 97 (109)
T 2cou_A 89 AGETMYLYE 97 (109)
T ss_dssp CCGGGTBCC
T ss_pred CChhccCCC
Confidence 999999885
No 20
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.09 E-value=1.4e-10 Score=115.86 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=70.0
Q ss_pred CCCCCcCCeEEEEee--------CCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCc-HH-----HHHh------c
Q 009742 14 DSNGIFAGMRVFLVE--------KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EA-----LLQQ------S 73 (527)
Q Consensus 14 ~~~~~f~~~~i~iv~--------~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~-~~-----~l~~------~ 73 (527)
.+..+|+|+++||.- ..+...|.++++.+++.+||+|.+.++++|||||+.+. ++ .++. .
T Consensus 160 ~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~ 239 (263)
T 3ii6_X 160 SPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFK 239 (263)
T ss_dssp CGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCE
T ss_pred CcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCE
Confidence 356899999999952 34566688999999999999999999999999998752 21 2332 2
Q ss_pred cccchHHHHHHhcCCCcCCccccc
Q 009742 74 VIRYQWLEDSLRLGEKVSEDLYRI 97 (527)
Q Consensus 74 vv~~~Wl~ec~~~g~~v~~~~~~l 97 (527)
+|+++|+.+|+++|++|||++|.|
T Consensus 240 iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 240 ILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EEETHHHHHHHHTTSCCCGGGTBC
T ss_pred EeChHHHHHHHHcCCcCCHhhCCC
Confidence 999999999999999999999975
No 21
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.09 E-value=6.8e-11 Score=103.31 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHH-HHHh------ccccchHHHHHHhcCCC
Q 009742 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA-LLQQ------SVIRYQWLEDSLRLGEK 89 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~-~l~~------~vv~~~Wl~ec~~~g~~ 89 (527)
..|.|++|++ .|.....++.|++++.++||.+...+.++|||+|+.+.+. +++. .||+++||.+|++.|..
T Consensus 20 p~F~g~~Ic~--sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ 97 (112)
T 3l46_A 20 PPFQDCILSF--LGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDAR 97 (112)
T ss_dssp CTTTTCEECE--ESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSC
T ss_pred CccCCeEEEE--eCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCc
Confidence 5899999999 5888888999999999999999999999999999987542 2331 29999999999999999
Q ss_pred cCCccccccc
Q 009742 90 VSEDLYRIKL 99 (527)
Q Consensus 90 v~~~~~~l~~ 99 (527)
++|..|.+..
T Consensus 98 ldE~~Y~~~~ 107 (112)
T 3l46_A 98 AGETMYLYEK 107 (112)
T ss_dssp CCGGGSBCCC
T ss_pred cChhhceecc
Confidence 9999999953
No 22
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=99.00 E-value=7.1e-10 Score=92.46 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=62.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHh
Q 009742 196 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 265 (527)
Q Consensus 196 ~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~t 265 (527)
+..|..|++-|+++++.++.. +..++.+|++|+.+|+++|.+|.+..|+..|+|||++|+++|.|+|+.
T Consensus 12 ~~~N~lf~~wL~e~~~~a~~r-~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 12 VCPNPLFVRWLTEWRDEAASR-GRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp CSCCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 346999999999999988844 456788999999999999999999999999999999999999999863
No 23
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.94 E-value=4.6e-10 Score=107.48 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=63.7
Q ss_pred EEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH-----H---HHH-----hccccchHHHHHHhcCCCcC
Q 009742 25 FLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-----A---LLQ-----QSVIRYQWLEDSLRLGEKVS 91 (527)
Q Consensus 25 ~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~-----~---~l~-----~~vv~~~Wl~ec~~~g~~v~ 91 (527)
+|+-.|++..+++.+.++++++||.+.+.+++.|||||+.+.+ + .+. .+||+++||.+|+++|+++|
T Consensus 6 ~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~~~~~ 85 (214)
T 1t15_A 6 SMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLN 85 (214)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTTSCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCCCcCC
Confidence 4455799999999999999999999999999999999997642 2 111 13999999999999999999
Q ss_pred Ccccccc
Q 009742 92 EDLYRIK 98 (527)
Q Consensus 92 ~~~~~l~ 98 (527)
+++|.+.
T Consensus 86 e~~y~~~ 92 (214)
T 1t15_A 86 EHDFEVR 92 (214)
T ss_dssp GGGGBCC
T ss_pred hHHeEee
Confidence 9999986
No 24
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.93 E-value=7.5e-10 Score=106.36 Aligned_cols=73 Identities=19% Similarity=0.356 Sum_probs=63.0
Q ss_pred EeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCc--HH---HHH-----hccccchHHHHHHhcCCCcCCccc
Q 009742 26 LVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL--EA---LLQ-----QSVIRYQWLEDSLRLGEKVSEDLY 95 (527)
Q Consensus 26 iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~--~~---~l~-----~~vv~~~Wl~ec~~~g~~v~~~~~ 95 (527)
|+-.|+...+++.|.++++++||.+++.++++|||||+.+. .+ .++ .+||+++||.+|+++|++||+++|
T Consensus 5 i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~e~~y 84 (210)
T 2nte_A 5 LIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKY 84 (210)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCCGGGT
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCChhhc
Confidence 34489999999999999999999999999999999999762 22 222 249999999999999999999999
Q ss_pred ccc
Q 009742 96 RIK 98 (527)
Q Consensus 96 ~l~ 98 (527)
.+.
T Consensus 85 ~~~ 87 (210)
T 2nte_A 85 EIP 87 (210)
T ss_dssp BCT
T ss_pred cCC
Confidence 995
No 25
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.88 E-value=1.4e-09 Score=105.47 Aligned_cols=80 Identities=13% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH-----H--HHH------hccccchHHHHH
Q 009742 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-----A--LLQ------QSVIRYQWLEDS 83 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~-----~--~l~------~~vv~~~Wl~ec 83 (527)
.-+++++|.+ .|+....+..|+++++++||.|.+.+++.|||||+.+.+ + ++. .+||+++||.+|
T Consensus 3 ~~~~~~~i~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~ 80 (229)
T 1l0b_A 3 RAERDISMVV--SGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKS 80 (229)
T ss_dssp CCCCCCEEEE--ESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHH
T ss_pred CCCCCeEEEE--cCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHH
Confidence 3467888888 699999999999999999999999999999999997641 2 111 249999999999
Q ss_pred HhcCCCcCCcccccc
Q 009742 84 LRLGEKVSEDLYRIK 98 (527)
Q Consensus 84 ~~~g~~v~~~~~~l~ 98 (527)
+++|++||+++|.+.
T Consensus 81 ~~~~~~~~e~~y~~~ 95 (229)
T 1l0b_A 81 IQERKLLSVHEFEVK 95 (229)
T ss_dssp HTTTSCCCSGGGBCC
T ss_pred HHCCCcCChHHeEec
Confidence 999999999999985
No 26
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.6e-09 Score=90.58 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEee-----------cCCCccEEEEeCcHH---HHHhccccch
Q 009742 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEK-----------LSKKVTHVLAMDLEA---LLQQSVIRYQ 78 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~-----------~s~~VTHVV~~~~~~---~l~~~vv~~~ 78 (527)
.....+|+|+++||.. ...++.|+.+|+.+||.|... .+..+||+|+....- .....+|.++
T Consensus 7 ~~~~~LF~g~~F~i~~----e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~~~~~r~~VqPq 82 (100)
T 2ep8_A 7 GKHKKLFEGLKFFLNR----EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQTSVIGRCYVQPQ 82 (100)
T ss_dssp SCSCCTTSSCEEECCS----SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSCCBTTBEEECTH
T ss_pred CchHHHcCCcEEEEec----CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhhhcCCCeEEcch
Confidence 4556899999999952 345789999999999999864 256899999864311 1112399999
Q ss_pred HHHHHHhcCCCcCCcccc
Q 009742 79 WLEDSLRLGEKVSEDLYR 96 (527)
Q Consensus 79 Wl~ec~~~g~~v~~~~~~ 96 (527)
|+.||+.+++++|+++|.
T Consensus 83 WV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 83 WVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp HHHHHHHHTSCCCTTTCC
T ss_pred HHHHHHhcCCcCChhhcC
Confidence 999999999999999984
No 27
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.77 E-value=6.6e-09 Score=103.66 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHHH----HHh--c-cccchHHHHHHh
Q 009742 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEAL----LQQ--S-VIRYQWLEDSLR 85 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~~----l~~--~-vv~~~Wl~ec~~ 85 (527)
.....+|+|+++||+. |.....++.|+++|.++||+|....++.+||||+...... .+. . ||+++|+.+|++
T Consensus 5 ~~~s~lF~G~~f~V~s-g~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~Dci~ 83 (263)
T 3ii6_X 5 SKISNIFEDVEFCVMS-GTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFK 83 (263)
T ss_dssp -CCCCTTTTCEEEECC-CC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCCHHHHHHHHSCSCCEECHHHHHHHHH
T ss_pred CcCcccCCCeEEEEEc-CCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCCHHHHHHHhcCCCCEeehHHHHHHHh
Confidence 3456899999999974 5555667899999999999999888888888888664332 221 2 999999999999
Q ss_pred cCCCcCCccccccc
Q 009742 86 LGEKVSEDLYRIKL 99 (527)
Q Consensus 86 ~g~~v~~~~~~l~~ 99 (527)
+|++||+++|.+..
T Consensus 84 ~~~llp~~p~~~~~ 97 (263)
T 3ii6_X 84 TKSFVPWQPRFMIH 97 (263)
T ss_dssp HTSCCCCCGGGEEE
T ss_pred cCCcCCCCHHHHhh
Confidence 99999999988763
No 28
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.66 E-value=2.7e-08 Score=101.03 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=70.3
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecC-CCccEEEEeCcH-HHHH---h---ccccchHHHHHHhcC
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLE-ALLQ---Q---SVIRYQWLEDSLRLG 87 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s-~~VTHVV~~~~~-~~l~---~---~vv~~~Wl~ec~~~g 87 (527)
...|.|++|++ +|.....++.+++++..+||.+...++ +++||||+.+.. .+++ . .||+.+||.+|++.|
T Consensus 197 ~~~f~g~~i~~--tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g 274 (298)
T 3olc_X 197 CPIFLGCIICV--TGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKG 274 (298)
T ss_dssp CCTTTTCEEEE--CSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHT
T ss_pred ccccCCeEEEE--eCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCC
Confidence 46899999999 577777789999999999999999999 799999987632 2222 1 399999999999999
Q ss_pred CCcCCcccccccC
Q 009742 88 EKVSEDLYRIKLD 100 (527)
Q Consensus 88 ~~v~~~~~~l~~~ 100 (527)
+++|+++|.+..+
T Consensus 275 ~~lde~~Y~l~~~ 287 (298)
T 3olc_X 275 FCQDESIYKTEPR 287 (298)
T ss_dssp SCCCGGGSBSCC-
T ss_pred CCCCchhcCCCCC
Confidence 9999999999643
No 29
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.66 E-value=1.4e-08 Score=84.60 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=57.5
Q ss_pred CCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCC-CccEEEEeCcHHHHHhccccchHHHHHHhcCCCcCC
Q 009742 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-KVTHVLAMDLEALLQQSVIRYQWLEDSLRLGEKVSE 92 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~-~VTHVV~~~~~~~l~~~vv~~~Wl~ec~~~g~~v~~ 92 (527)
.+|.|+++||-+ .. ++...|.+.++..||.|+..++. +|||||+.+.+ ....-+|+++|+-+|++.|++||.
T Consensus 15 diFsg~~~~l~~-~v--~~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~-~~~~~~V~p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 15 DIFTGVRLYLPP-ST--PDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK-NPAAQQVSPEWIWACIRKRRLVAP 87 (88)
T ss_dssp CCSTTCEECCCT-TS--TTHHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT-CTTSEEECHHHHHHHHHHTSCCSC
T ss_pred hhhcCeEEEccC-Cc--CchhhheeeeeecCCEEecccCCCcCeEEecCCCc-CCCCcEEchHHHHHHHhCCcccCC
Confidence 799999999953 23 44579999999999999887764 89999976531 111129999999999999999985
No 30
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.59 E-value=4.3e-08 Score=96.21 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEe--ecCCCccEEEEeCcHHHHH--------hccccchHHHHHHhcCCC
Q 009742 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE--KLSKKVTHVLAMDLEALLQ--------QSVIRYQWLEDSLRLGEK 89 (527)
Q Consensus 20 ~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~--~~s~~VTHVV~~~~~~~l~--------~~vv~~~Wl~ec~~~g~~ 89 (527)
++.++.+ .|+....+..+++.+++.||.|++ .++++|||||+....+.++ .+||+++||.+|+++|+.
T Consensus 8 ~~~~~~~--Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~ 85 (235)
T 3al2_A 8 KQYIFQL--SSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHF 85 (235)
T ss_dssp CCCEEEE--ESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSC
T ss_pred CCEEEEE--cCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCC
Confidence 3455555 588887778899999999999986 5789999999977543222 259999999999999999
Q ss_pred cCCcccccc
Q 009742 90 VSEDLYRIK 98 (527)
Q Consensus 90 v~~~~~~l~ 98 (527)
||+++|.+.
T Consensus 86 l~E~~ye~~ 94 (235)
T 3al2_A 86 VQEEDYEWG 94 (235)
T ss_dssp CCSGGGBTT
T ss_pred CChhceeec
Confidence 999999996
No 31
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.57 E-value=5e-08 Score=101.94 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=66.0
Q ss_pred CCcCCeEEEEeeCC--CChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH-HH----HHh---ccccchHHHHHHhc
Q 009742 17 GIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-AL----LQQ---SVIRYQWLEDSLRL 86 (527)
Q Consensus 17 ~~f~~~~i~iv~~~--~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~-~~----l~~---~vv~~~Wl~ec~~~ 86 (527)
..|+|++|+|.... +.+..+..+.+++.++||+|...++++|||||+.+.. .+ .+. .||+.+||.+|++.
T Consensus 281 ~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~~ 360 (372)
T 3ef0_A 281 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQ 360 (372)
T ss_dssp TTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHHT
T ss_pred hhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHHh
Confidence 68999999995332 1233467899999999999999999999999987532 12 222 39999999999999
Q ss_pred CCCcCCccccc
Q 009742 87 GEKVSEDLYRI 97 (527)
Q Consensus 87 g~~v~~~~~~l 97 (527)
++.|||.+|.|
T Consensus 361 ~~~vdE~~Y~l 371 (372)
T 3ef0_A 361 WKRLPESDYLL 371 (372)
T ss_dssp TSCCCGGGGBC
T ss_pred CCcCChhhcee
Confidence 99999999987
No 32
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.56 E-value=4.7e-08 Score=93.51 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=60.5
Q ss_pred eeCCCChhHHHHHHHHHHhcCC-EEEeecCCCccEEEEeCcHH---HHH-----hccccchHHHHHHhcCCCcCCccccc
Q 009742 27 VEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKKVTHVLAMDLEA---LLQ-----QSVIRYQWLEDSLRLGEKVSEDLYRI 97 (527)
Q Consensus 27 v~~~~g~~r~~~l~~~~~~~G~-~v~~~~s~~VTHVV~~~~~~---~l~-----~~vv~~~Wl~ec~~~g~~v~~~~~~l 97 (527)
+=+|+....++.+.+++.++|| .+++.+++.|||||+.+..+ .+. .+||+++||.+|+++|+.+|+++|.+
T Consensus 15 ~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~y~~ 94 (199)
T 3u3z_A 15 VMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFEL 94 (199)
T ss_dssp EEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCSGGGBC
T ss_pred EEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCChhhccc
Confidence 3369999989999999999977 67789999999999966322 111 24999999999999999999999999
Q ss_pred c
Q 009742 98 K 98 (527)
Q Consensus 98 ~ 98 (527)
.
T Consensus 95 ~ 95 (199)
T 3u3z_A 95 S 95 (199)
T ss_dssp T
T ss_pred c
Confidence 5
No 33
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.52 E-value=6.1e-08 Score=94.12 Aligned_cols=78 Identities=24% Similarity=0.432 Sum_probs=66.0
Q ss_pred CcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHH---HHH-----hccccchHHHHHHhcCCC
Q 009742 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA---LLQ-----QSVIRYQWLEDSLRLGEK 89 (527)
Q Consensus 18 ~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~---~l~-----~~vv~~~Wl~ec~~~g~~ 89 (527)
.+.+++|.+ +|+....++.++++++++||.|.+.. .++||+|+.+..+ .+. .+||+++||.+|+++|+.
T Consensus 13 ~~~~~~i~~--SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~ 89 (219)
T 3sqd_A 13 PELTPFVLF--TGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKF 89 (219)
T ss_dssp GGGCCEEEE--CSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSC
T ss_pred CCCCeEEEE--eCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCC
Confidence 456778888 68998888899999999999999886 8999999976433 222 249999999999999999
Q ss_pred cCCcccccc
Q 009742 90 VSEDLYRIK 98 (527)
Q Consensus 90 v~~~~~~l~ 98 (527)
||+++|.+.
T Consensus 90 l~e~~y~l~ 98 (219)
T 3sqd_A 90 IDEQNYILR 98 (219)
T ss_dssp CCSGGGBCC
T ss_pred CChHhccCC
Confidence 999999995
No 34
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.51 E-value=3.2e-08 Score=98.21 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCc----HH---HHH-----h--------
Q 009742 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL----EA---LLQ-----Q-------- 72 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~----~~---~l~-----~-------- 72 (527)
..+..+|+|+++||... ....+.++|+..++.+||+|.+.++..+||||+... .. .++ .
T Consensus 155 ~~~~~lF~g~~~yl~~~-~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (264)
T 1z56_C 155 RFPLFLFSNRIAYVPRR-KISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIP 233 (264)
T ss_dssp CCCCC---------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCC
T ss_pred cCchhhhCCeEEEEecC-CCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccC
Confidence 35668999999999643 335577899999999999999999877888887432 11 222 1
Q ss_pred ---ccccchHHHHHHhcCCCcCCccccc
Q 009742 73 ---SVIRYQWLEDSLRLGEKVSEDLYRI 97 (527)
Q Consensus 73 ---~vv~~~Wl~ec~~~g~~v~~~~~~l 97 (527)
.+|.++|+.+|+++|++||+++|.+
T Consensus 234 ~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 234 KIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 4999999999999999999999965
No 35
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.51 E-value=1e-07 Score=94.83 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCCCCCcCCeEEEEeeCCCCh-----------------------------hHHHHHHHHHHhcCCEEEeecCCC------
Q 009742 13 LDSNGIFAGMRVFLVEKGVQN-----------------------------RRLQIWRQKLVQMGATVEEKLSKK------ 57 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~-----------------------------~r~~~l~~~~~~~G~~v~~~~s~~------ 57 (527)
.....+|.|+..+| ++..+ ..++.|+++|+++||.|.+.+++.
T Consensus 10 p~~~~iF~g~~F~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~ 87 (259)
T 1kzy_C 10 PLNKTLFLGYAFLL--TMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAY 87 (259)
T ss_dssp CSSTTTTTTEEEEE--CCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTC
T ss_pred CCCCcCcCCcEEEE--EcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCC
Confidence 34578999999988 44433 255799999999999999888754
Q ss_pred ccEEEEeCcHH--H-HH-----hccccchHHHHHHhcCCCcCCcccccc
Q 009742 58 VTHVLAMDLEA--L-LQ-----QSVIRYQWLEDSLRLGEKVSEDLYRIK 98 (527)
Q Consensus 58 VTHVV~~~~~~--~-l~-----~~vv~~~Wl~ec~~~g~~v~~~~~~l~ 98 (527)
+||+|+....+ + +. ..||+.+||.+|+++|+++|+++|.|.
T Consensus 88 ~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 88 QCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred CeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 79999966332 1 11 139999999999999999999999995
No 36
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.44 E-value=5.8e-08 Score=93.36 Aligned_cols=74 Identities=18% Similarity=0.384 Sum_probs=57.1
Q ss_pred cCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHHH---HH-----hccccchHHHHHHhcCCCc
Q 009742 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEAL---LQ-----QSVIRYQWLEDSLRLGEKV 90 (527)
Q Consensus 19 f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~~---l~-----~~vv~~~Wl~ec~~~g~~v 90 (527)
..+++|.+ .|+.... +++++.++||.+.+.+++ +||+|+.+..+. +. .+||+.+||.+|+++|+.|
T Consensus 10 ~~~~~v~~--sG~~~~~---~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~l 83 (209)
T 2etx_A 10 STAPKVLF--TGVVDAR---GERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFL 83 (209)
T ss_dssp --CCEEEE--CSSCCHH---HHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSCC
T ss_pred CCCcEEEE--eCCCcHH---HHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCCC
Confidence 45666666 5666532 489999999999999874 999999754321 11 2499999999999999999
Q ss_pred CCcccccc
Q 009742 91 SEDLYRIK 98 (527)
Q Consensus 91 ~~~~~~l~ 98 (527)
|+++|.+.
T Consensus 84 ~e~~y~~~ 91 (209)
T 2etx_A 84 PPDEYVVT 91 (209)
T ss_dssp CSGGGBCC
T ss_pred Chhhcccc
Confidence 99999884
No 37
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.42 E-value=1.6e-07 Score=99.78 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=65.0
Q ss_pred CCcCCeEEEEeeCCCC--hhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH-HH----HHh---ccccchHHHHHHhc
Q 009742 17 GIFAGMRVFLVEKGVQ--NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-AL----LQQ---SVIRYQWLEDSLRL 86 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g--~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~-~~----l~~---~vv~~~Wl~ec~~~ 86 (527)
..|.|++|+|.-.... ...+..+.++|.++||++...++++|||||+.+.. .+ .+. .||+.+||.+|++.
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~ 430 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQ 430 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHHH
T ss_pred cccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHHHc
Confidence 6899999999532211 12347789999999999999999999999997632 12 221 39999999999999
Q ss_pred CCCcCCccccc
Q 009742 87 GEKVSEDLYRI 97 (527)
Q Consensus 87 g~~v~~~~~~l 97 (527)
++.++|.+|.|
T Consensus 431 ~krldE~~YlL 441 (442)
T 3ef1_A 431 WKRLPESDYLL 441 (442)
T ss_dssp TSCCCGGGTBC
T ss_pred CCcCChhcccc
Confidence 99999999987
No 38
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.22 E-value=1.8e-06 Score=87.49 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=66.2
Q ss_pred CCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH-HHHH------hccccchHHHHHHhcC
Q 009742 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-ALLQ------QSVIRYQWLEDSLRLG 87 (527)
Q Consensus 15 ~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~-~~l~------~~vv~~~Wl~ec~~~g 87 (527)
+...|+|+++.+ .|+-...++.+.+++.++||++...++++|||||+.+.. .+++ ..||+++||.+|++.|
T Consensus 102 y~~~l~g~~~~~--tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~ 179 (298)
T 3olc_X 102 YNMVMSDVTISC--TSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKS 179 (298)
T ss_dssp CCCTTTTCEEEE--ESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cccccCCeEEEe--CCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcC
Confidence 367899999999 588877889999999999999999999999999997642 2222 1399999999999999
Q ss_pred CCcCCccc
Q 009742 88 EKVSEDLY 95 (527)
Q Consensus 88 ~~v~~~~~ 95 (527)
+.++..+|
T Consensus 180 ~~~~~~~~ 187 (298)
T 3olc_X 180 QEKKITRY 187 (298)
T ss_dssp HTTCCSSG
T ss_pred CcCCcccc
Confidence 98876544
No 39
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.19 E-value=1.1e-06 Score=86.33 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=62.4
Q ss_pred CcCCeEEEEeeCC-CChhHHHHHHHHHHhcCCEEEee-----c--CC-------------------CccEEEEeCcHH--
Q 009742 18 IFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEK-----L--SK-------------------KVTHVLAMDLEA-- 68 (527)
Q Consensus 18 ~f~~~~i~iv~~~-~g~~r~~~l~~~~~~~G~~v~~~-----~--s~-------------------~VTHVV~~~~~~-- 68 (527)
+|+|++++|.-.. ....+++.|+++|.++||+|.+. + .. +.||+|+....+
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 7999999996431 12346788999999999999875 1 11 359999875332
Q ss_pred -HHHh-----ccccchHHHHHHhcCCCcCCccccccc
Q 009742 69 -LLQQ-----SVIRYQWLEDSLRLGEKVSEDLYRIKL 99 (527)
Q Consensus 69 -~l~~-----~vv~~~Wl~ec~~~g~~v~~~~~~l~~ 99 (527)
.++. -+|+.+|+.+|+++|+++|+++|.|..
T Consensus 82 K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 82 KYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp HHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred HHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 2221 299999999999999999999999953
No 40
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.5e-07 Score=93.35 Aligned_cols=83 Identities=12% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCcCCeEEEEeeCCCC-----hhHHHHHHHHHHhcCCEEEeecCCC-----ccEEEEeCcHHHHH---h---ccccchH
Q 009742 16 NGIFAGMRVFLVEKGVQ-----NRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLEALLQ---Q---SVIRYQW 79 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g-----~~r~~~l~~~~~~~G~~v~~~~s~~-----VTHVV~~~~~~~l~---~---~vv~~~W 79 (527)
..+|+|+++||+.-... ...++.|+++++++||.+....... .||||+.......+ . -+|+++|
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k~~~~~~~~~~vV~p~W 82 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPNW 82 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGGGGGGTTTTCCCBCSST
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHHHHHHHhCCCCEEechH
Confidence 46999999999732221 1235889999999999887543322 47888865432222 1 3999999
Q ss_pred HHHHHhcCCCcCCcccccc
Q 009742 80 LEDSLRLGEKVSEDLYRIK 98 (527)
Q Consensus 80 l~ec~~~g~~v~~~~~~l~ 98 (527)
+.+|+++|+++|+++|.+.
T Consensus 83 v~dci~~~~llp~~~y~~~ 101 (264)
T 1z56_C 83 VLDCIAYKRLILIEPNYCF 101 (264)
T ss_dssp THHHHSSCSCCCCCSCBSC
T ss_pred HHHHhhcCCCCCCChHHhh
Confidence 9999999999999998876
No 41
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.05 E-value=9.2e-07 Score=85.94 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=55.1
Q ss_pred eEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHHH---HH-----hccccchHHHHHHhcCCCcCCc
Q 009742 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEAL---LQ-----QSVIRYQWLEDSLRLGEKVSED 93 (527)
Q Consensus 22 ~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~~---l~-----~~vv~~~Wl~ec~~~g~~v~~~ 93 (527)
++|.+ +|+.... .++.++++||.|++.++ ++||+|+....+. |. .+||+++||.+|+++|+.++++
T Consensus 9 ~~v~f--SG~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~ 82 (220)
T 3l41_A 9 VYITF--TGYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEE 82 (220)
T ss_dssp EEEEE--CSCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSG
T ss_pred EEEEE--eccCCCC---CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccC
Confidence 34444 4665542 28999999999999875 6999999764332 22 2499999999999999999999
Q ss_pred ccccc
Q 009742 94 LYRIK 98 (527)
Q Consensus 94 ~~~l~ 98 (527)
+|.+.
T Consensus 83 ~y~l~ 87 (220)
T 3l41_A 83 PYLLN 87 (220)
T ss_dssp GGBCC
T ss_pred ccccC
Confidence 99985
No 42
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=97.90 E-value=3.8e-06 Score=80.18 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcHHH-HHhccccchHHHHHHhcCCCcCCc
Q 009742 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEAL-LQQSVIRYQWLEDSLRLGEKVSED 93 (527)
Q Consensus 15 ~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~~~-l~~~vv~~~Wl~ec~~~g~~v~~~ 93 (527)
...+|.|+.+|++....... ++.|+++|+.+||+|...+. .+++||+....+. ...-+|+++|+.||+.+++++|++
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~~~~~~~~~~~V~p~Wi~DsI~~~~llp~~ 193 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPR-QASIVIGPYSGKKKATVKYLSEKWVLDSITQHKVCAPE 193 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGG-GCSEEESCCCSCCCTTCEEECHHHHHHHHHHTSCCCGG
T ss_pred cchhhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCC-CCEEEEeCCchhccCCCcEEChhHHHHHHHcCCcCChH
Confidence 34899999766665444444 48899999999999999884 4566664322211 111299999999999999999999
Q ss_pred ccccc
Q 009742 94 LYRIK 98 (527)
Q Consensus 94 ~~~l~ 98 (527)
+|.+.
T Consensus 194 ~Y~~~ 198 (199)
T 3u3z_A 194 NYLLS 198 (199)
T ss_dssp GGBCC
T ss_pred hccCC
Confidence 99873
No 43
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.87 E-value=1.9e-05 Score=76.11 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=60.8
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCC-----CccEEEEeCcH-----HHHH-------hccccch
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLE-----ALLQ-------QSVIRYQ 78 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~-----~VTHVV~~~~~-----~~l~-------~~vv~~~ 78 (527)
..+|.|+.+||....... .++.|+++++.+||.|...+.. .+||+|..+.+ ..++ ..+|+.+
T Consensus 115 ~~lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~ 193 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNM-PKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWD 193 (229)
T ss_dssp --CCTTCEEEECSCCSSS-CHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETH
T ss_pred hhhhcCceEEEEecCCCC-CHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehh
Confidence 379999999997544444 4678899999999999998865 36885543311 1111 1399999
Q ss_pred HHHHHHhcCCCcCCcccccc
Q 009742 79 WLEDSLRLGEKVSEDLYRIK 98 (527)
Q Consensus 79 Wl~ec~~~g~~v~~~~~~l~ 98 (527)
||.+|+..++++++++|.|.
T Consensus 194 WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 194 WVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHhcCCcCCccceEcc
Confidence 99999999999999999885
No 44
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.87 E-value=2e-05 Score=75.00 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=62.3
Q ss_pred CCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCC-----CccEEEEeCcHH-----HHHh-------ccccc
Q 009742 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEA-----LLQQ-------SVIRY 77 (527)
Q Consensus 15 ~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~-----~VTHVV~~~~~~-----~l~~-------~vv~~ 77 (527)
...+|.|+.+|+...... ..++.|+++++.+||.|+..+.. .++|||..+.+. .++. .+|+.
T Consensus 112 ~~~lF~g~~~~~~~~~~~-~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~ 190 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTN-MPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTR 190 (214)
T ss_dssp TSCTTTTCEEEECSCCSS-SCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEH
T ss_pred CCcccCCCEEEEEecCCC-CCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEec
Confidence 457999999999754433 34677899999999999998865 223465443221 1221 29999
Q ss_pred hHHHHHHhcCCCcCCcccccc
Q 009742 78 QWLEDSLRLGEKVSEDLYRIK 98 (527)
Q Consensus 78 ~Wl~ec~~~g~~v~~~~~~l~ 98 (527)
+||.+|+.+++++|+++|.+.
T Consensus 191 ~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 191 EWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHHTSCCCSGGGBCC
T ss_pred cHHHHhHhhcCcCCCcceeec
Confidence 999999999999999999874
No 45
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.58 E-value=4.9e-05 Score=64.30 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=46.3
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 311 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL 311 (527)
+.++|..|||||+.+|.+|.+..+ +|.+..+++ |.+|+|||++++++|++.|+ ++++
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~ed------------L~~v~Gig~k~~~~l~~~g~--ld~~ 95 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHGPFSQVED------------LERVEGITGKQMESFLKANI--LGLA 95 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGG------------GGGSTTCCHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHH------------HHhCCCCCHHHHHHHHHCcC--hhcc
Confidence 356789999999999999999976 477755544 46899999999999999885 4444
No 46
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.41 E-value=0.00018 Score=71.30 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=60.2
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecC---------CCccEEEEeCcH---HHHH------hccccc
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---------KKVTHVLAMDLE---ALLQ------QSVIRY 77 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s---------~~VTHVV~~~~~---~~l~------~~vv~~ 77 (527)
..+|.|++||++....+ .+.+++..+++..||.|...+. ..++|||..+.+ ..++ .-+|+.
T Consensus 153 ~~LF~G~~I~i~~~~~~-~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~ 231 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQ-NFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQ 231 (259)
T ss_dssp CCTTTTCEEEEEESCTT-TTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECH
T ss_pred CCCCCCeEEEEecCCCC-CHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecH
Confidence 57999999999876533 3568999999999999997763 256777765421 1221 129999
Q ss_pred hHHHHHHhcCCCcCCccc
Q 009742 78 QWLEDSLRLGEKVSEDLY 95 (527)
Q Consensus 78 ~Wl~ec~~~g~~v~~~~~ 95 (527)
+|+.+|+..|+++|.+.|
T Consensus 232 EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 232 EWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp HHHHHHHHHTSCCCTTSS
T ss_pred HHHHHHHHhCCcCCCCcC
Confidence 999999999999998654
No 47
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.20 E-value=0.0012 Score=56.93 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred CCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH--HHHHh---c---cccchHHHHHH
Q 009742 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--ALLQQ---S---VIRYQWLEDSL 84 (527)
Q Consensus 13 ~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~--~~l~~---~---vv~~~Wl~ec~ 84 (527)
...+..|.|.++.|--.--.- .|+.++++|.++||.|...+|++++|||+-++. .+++. + ||+-+||.+++
T Consensus 27 ~~~~~~l~G~~~v~TG~l~~~-~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll 105 (109)
T 2k6g_A 27 KGAENCLEGLIFVITGVLESI-ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLI 105 (109)
T ss_dssp CCCTTTTTTCEEEEESBCSSC-CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred CCCCCCCCCCEEEEeeeCCCC-CHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHH
Confidence 344567999999996443232 357889999999999999999999999986532 34443 2 99999999999
Q ss_pred hcCC
Q 009742 85 RLGE 88 (527)
Q Consensus 85 ~~g~ 88 (527)
..++
T Consensus 106 ~~~E 109 (109)
T 2k6g_A 106 RNLE 109 (109)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 8764
No 48
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.19 E-value=0.00033 Score=66.72 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=57.0
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecC-----------------------CCccEEEEeCcHH----
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-----------------------KKVTHVLAMDLEA---- 68 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s-----------------------~~VTHVV~~~~~~---- 68 (527)
...|.|+.+|+.... ....++.|+++++..||.|..... ..+||.|..+...
T Consensus 102 ~~lF~g~~~~l~~~~-~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~ 180 (210)
T 2nte_A 102 PKLFDGCYFYLWGTF-KHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHP 180 (210)
T ss_dssp CCTTTTCEEEECSCC-SSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCC
T ss_pred ccccCceEEEEeccC-CCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCH
Confidence 478999999997533 334568999999999999986221 3468887543211
Q ss_pred -HHH---hccccchHHHHHHhcCCCcCCcc
Q 009742 69 -LLQ---QSVIRYQWLEDSLRLGEKVSEDL 94 (527)
Q Consensus 69 -~l~---~~vv~~~Wl~ec~~~g~~v~~~~ 94 (527)
..+ ..+|+.+||.||+..++++|.++
T Consensus 181 ~~~~~~~v~~V~~~Wl~dcI~~~~llp~~~ 210 (210)
T 2nte_A 181 ERVRQGKVWKAPSSWFIDCVMSFELLPLDS 210 (210)
T ss_dssp SCSEETTEEEEEHHHHHHHHHHTSCCCSCC
T ss_pred HHHhccCcccccHHHHHHHHHhCeeccCCC
Confidence 111 13899999999999999999753
No 49
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.19 E-value=9.5e-05 Score=59.30 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=37.1
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 242 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 242 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
.++|..|||||++.|.+|.+.. +...++.|.+|+|+|++++++++.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r---------------~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR---------------PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC---------------CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHc---------------ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 4679999999999999998864 233444556999999999999864
No 50
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=97.12 E-value=0.00032 Score=68.77 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCCcCCeEEEEeeCCCChh-----------HHHHHHHHHHhcCCEE--EeecCCCccEEEEeCcHHH---HHhccccchH
Q 009742 16 NGIFAGMRVFLVEKGVQNR-----------RLQIWRQKLVQMGATV--EEKLSKKVTHVLAMDLEAL---LQQSVIRYQW 79 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~-----------r~~~l~~~~~~~G~~v--~~~~s~~VTHVV~~~~~~~---l~~~vv~~~W 79 (527)
..+|.|.+||++...-+.+ ..+.+..+++-+||.+ .+.+....+|+|..+.... .+.-+|+.+|
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~~~~~~~~~iV~~eW 228 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGNIVDETNCPVVDPEW 228 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSCCCSSCSSCEECHHH
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCccccccCCCCEecHHH
Confidence 4789999999986433322 2489999999999999 4445557899998654321 1123999999
Q ss_pred HHHHHhcCCCcCC
Q 009742 80 LEDSLRLGEKVSE 92 (527)
Q Consensus 80 l~ec~~~g~~v~~ 92 (527)
|.+|+..|+++++
T Consensus 229 v~~~i~~g~~l~~ 241 (241)
T 2vxb_A 229 IVECLISQSDIST 241 (241)
T ss_dssp HHHHHHHTSCTTC
T ss_pred HHHHHHhceecCC
Confidence 9999999999874
No 51
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.01 E-value=0.00072 Score=56.61 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH-HHHHh---c---cccchHHHHHHhc
Q 009742 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-ALLQQ---S---VIRYQWLEDSLRL 86 (527)
Q Consensus 15 ~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~-~~l~~---~---vv~~~Wl~ec~~~ 86 (527)
++..|.|.++.|--.--. .|+.++++|.++||.|...+|.++||||+-++. .+++. + ||+-+||.+++..
T Consensus 4 ~~~~l~G~~~v~TG~l~~--~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR--PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCCSSTTCEEECSTTTTS--CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC--CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 456699999999543223 568899999999999999999999999986642 33332 2 9999999999863
No 52
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=96.99 E-value=0.00098 Score=63.64 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=60.3
Q ss_pred CCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCC--ccEEEE-eCcHH-----HHHh--ccccchHHHHHHhc
Q 009742 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--VTHVLA-MDLEA-----LLQQ--SVIRYQWLEDSLRL 86 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~--VTHVV~-~~~~~-----~l~~--~vv~~~Wl~ec~~~ 86 (527)
..|.|.++|+.+. ... ....|+++++..||.|....... -+|||. .+.+. ..+. .+|+.+|+.+|+..
T Consensus 114 ~lF~g~~~~~~~~-~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~ 191 (209)
T 2etx_A 114 RLLEGYEIYVTPG-VQP-PPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLK 191 (209)
T ss_dssp CTTTTCEEEECTT-CSS-CHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHH
T ss_pred CCcCCcEEEEeCC-CCC-CHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHh
Confidence 7999999999753 223 35788999999999999887654 367775 32221 1221 39999999999999
Q ss_pred CCCcCCcccccccC
Q 009742 87 GEKVSEDLYRIKLD 100 (527)
Q Consensus 87 g~~v~~~~~~l~~~ 100 (527)
+++ +.+.|.|..+
T Consensus 192 q~l-d~e~y~l~~~ 204 (209)
T 2etx_A 192 QEA-KPEAFVLSPL 204 (209)
T ss_dssp TCC-CGGGGBCCTT
T ss_pred ccc-ChHHheecCC
Confidence 775 9999999643
No 53
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=96.97 E-value=0.0011 Score=57.59 Aligned_cols=77 Identities=9% Similarity=0.144 Sum_probs=56.6
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCc----HHHHHh---c---cccchHH-----
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL----EALLQQ---S---VIRYQWL----- 80 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~----~~~l~~---~---vv~~~Wl----- 80 (527)
...|.|.++.|--+ +.. .|.-++++|+++||.|...+++++||||+.+. ..+++. + ||+-+||
T Consensus 8 ~~~l~G~~~ViTG~-l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~ 85 (113)
T 2cok_A 8 DKPLSNMKILTLGK-LSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSA 85 (113)
T ss_dssp CCSSSSCEEEECSC-CSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHS
T ss_pred CCCcCCCEEEEEec-CCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHh
Confidence 34699999999654 344 46888999999999999999999999998732 123332 2 9999994
Q ss_pred -----HHHHhcCCCcCCcc
Q 009742 81 -----EDSLRLGEKVSEDL 94 (527)
Q Consensus 81 -----~ec~~~g~~v~~~~ 94 (527)
.+|++.....||+.
T Consensus 86 ~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 86 STKSLQELFLAHILSSWGA 104 (113)
T ss_dssp CCSCHHHHHHHTBCSSCCC
T ss_pred hchhHHHHHHHhcCCCCCC
Confidence 45555555555543
No 54
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=96.89 E-value=0.00091 Score=56.56 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=38.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
+.++|..|||||+.+|+.|.+ .|.+..+++| .+|+|+|+++..++-.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~---~GpF~s~edL------------~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVK---NAPYESVEDV------------LNIPGLTERQKQILRE 70 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHH---HCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHH---cCCCCCHHHH------------HhccCCCHHHHHHHHH
Confidence 458999999999999999988 5666655554 4899999999998854
No 55
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.79 E-value=0.0012 Score=58.58 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=37.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 301 (527)
+.++++.|||||++.|++|- ++|-+..+|+| .+|+|||+|+.+.+-
T Consensus 61 ~~~eL~~LpGiGp~~A~~II---~~GpF~svedL------------~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV---KNAPYESVEDV------------LNIPGLTERQKQILR 106 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH---HTCCCSSGGGG------------GGCTTCCHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH---HcCCCCCHHHH------------HhCCCCCHHHHHHHH
Confidence 35789999999999999998 57777766665 489999999887773
No 56
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.0038 Score=54.15 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=57.0
Q ss_pred CCCCCCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeCcH--HHHHh------ccccchHHHHH
Q 009742 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--ALLQQ------SVIRYQWLEDS 83 (527)
Q Consensus 12 ~~~~~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~~~--~~l~~------~vv~~~Wl~ec 83 (527)
+...+..|.|.++.|--.--.- .|+.++++|.++||.|...+|++++|||+-++. .+++. -|++-+||.+.
T Consensus 16 P~~~~~~l~G~~~v~TG~l~~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~l 94 (112)
T 2ebu_A 16 PKGAENCLEGLIFVITGVLESI-ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNL 94 (112)
T ss_dssp CCCCSSSSTTCEEEECSCCSSS-CHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCCCCCcCCCEEEEeeeCCCC-CHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHH
Confidence 3444567999999995433222 457889999999999999999999999986632 34443 29999999999
Q ss_pred Hhc
Q 009742 84 LRL 86 (527)
Q Consensus 84 ~~~ 86 (527)
+..
T Consensus 95 l~~ 97 (112)
T 2ebu_A 95 IRT 97 (112)
T ss_dssp HHH
T ss_pred Hhh
Confidence 975
No 57
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.51 E-value=0.005 Score=48.52 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=38.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
..|.+|||||+.++..|.+.. |++ +.+.+.. .+.|.+|+|||+++|..++.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~f--gs~---~~l~~a~----~~~L~~i~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHF--GSV---ERVFTAS----VAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSH---HHHHHCC----HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHc--CCH---HHHHhCC----HHHHhcCCCCCHHHHHHHHH
Confidence 458899999999999988754 554 4443322 34567999999999999975
No 58
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.28 E-value=0.0026 Score=60.29 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=38.0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 244 QVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 244 ~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
.|.++||||+++|..|-..... ..+ +.+. ....+.|++|||||+|||++++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~---~~l~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPP---RLLARALL----EGDARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCH---HHHHHHHH----TTCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhCCh---HHHHHHHH----hCCHHHHHhCCCCCHHHHHHHHH
Confidence 5778999999999998765433 222 2233 23456778999999999999975
No 59
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.19 E-value=0.004 Score=50.00 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=38.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
..|.+|||||+..+.+|.+.. |. ++.+.+. ..+.|.+|+|||+++|..+++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f--gs---l~~l~~a----~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM--GG---LQGLRNA----SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH--SC---HHHHHHC----CHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc--CC---HHHHHHC----CHHHHHHCCCCCHHHHHHHHH
Confidence 458899999999999988764 44 4444432 234567999999999999975
No 60
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.07 E-value=0.0038 Score=60.08 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=37.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhH-HHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 244 QVKGLPGIGKSMQDHIQEIVTTGKLSKLE-HFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 244 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le-~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
.|.+++|||+++|..|-+-+.. ..+. .+.+ .-.+.|++|||||+|||+++..
T Consensus 89 ~L~sv~GIGpk~A~~Ils~~~~---~~l~~aI~~----~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 89 TLLSVSGVGPRLAMAALAVHDA---PALRQVLAD----GNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHSCH---HHHHHHHHT----TCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhcCcCCcCHHHHHHHHHhCCH---HHHHHHHHh----CCHHHHhhCCCCCHHHHHHHHH
Confidence 4777999999999998765433 3332 1222 2245667999999999999974
No 61
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.00 E-value=0.0082 Score=49.37 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=38.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
..|.+|||||+..+.+|.+-. |+ ++.+.+.. .+.|.+|+|||+++|..++.
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~f--gs---l~~l~~a~----~~eL~~i~GIG~~~a~~I~~ 69 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTTF--GS---LEQLIAAS----REDLALCPGLGPQKARRLFD 69 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHHT--CB---HHHHHHCC----HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CC---HHHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 457899999999998887653 44 34444322 34567999999999999976
No 62
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=95.96 E-value=0.0036 Score=59.85 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=37.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 244 QVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 244 ~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
.|.++||||+++|..|-..... ..+ +.+. ....+.|++|||||+|||++++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~---~~l~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSA---QQFVNAVE----REEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCH---HHHHHHHH----TTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCCh---HHHHHHHH----hCCHHHHhhCCCCCHHHHHHHHH
Confidence 4667999999999988765332 222 2333 23456778999999999999974
No 63
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=95.93 E-value=0.006 Score=57.77 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhcCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCH
Q 009742 220 RRSFSYYKAIPVIEKLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP 294 (527)
Q Consensus 220 ~r~~aY~rAa~~l~~l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp 294 (527)
.++..|-+.| .+|+ +.++|..|||||++.|..|-++-+.|.+..+|+|.+ +|.|||.
T Consensus 115 ~~fv~f~n~a-------~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~-----------RV~GIg~ 172 (205)
T 2i5h_A 115 KKYVDFFNKA-------DSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ-----------RVKGIQR 172 (205)
T ss_dssp HHHHHHHC---------CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH-----------HSTTCCC
T ss_pred hhhhhhcccc-------CCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH-----------hcCCCCc
Confidence 4565664333 3444 568999999999999999999998898888887753 5888443
No 64
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.82 E-value=0.0096 Score=49.25 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=38.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
..|.+|||||+..+.+|.+-. |.+ +.+.... .+.|.+|+|||+++|..+++
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~f--gs~---~~l~~as----~~eL~~i~GIG~~~a~~I~~ 82 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAAS----REDLALCPGLGPQKARRLFD 82 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--SSH---HHHHSCC----HHHHHTSSSCCSHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 457899999999999887654 443 4444322 34567999999999999976
No 65
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=95.80 E-value=0.0054 Score=48.87 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=35.6
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCCCHHHHhhccCcchhhhccccchhhhcc
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 333 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~~L~~~q~~Glk~yed~~~ 333 (527)
....|.+|+|||+++|+++++. ++.|++||.+ ..++|.+.++.+..
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~------v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDLLK------VKGIGPATLERLRP 71 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGG------STTCCHHHHHHHGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHh------CCCCCHHHHHHHHH
Confidence 4556779999999999999997 8899998874 45666666665543
No 66
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=95.77 E-value=0.011 Score=57.45 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=62.2
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecC----CCccEEEEeCcH-------HHHHh------ccccch
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS----KKVTHVLAMDLE-------ALLQQ------SVIRYQ 78 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s----~~VTHVV~~~~~-------~~l~~------~vv~~~ 78 (527)
...|.|..+||..+ .++...|+++++.-||+|....+ .+.||++..-+. ..++. -+|+.+
T Consensus 133 ~~lF~g~~v~l~~~---~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~e 209 (235)
T 3al2_A 133 EGAFSGWKVILHVD---QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTE 209 (235)
T ss_dssp SSTTTTCEEEEECC---HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETH
T ss_pred CCCCCCcEEEEecC---CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHH
Confidence 58999999999764 56778899999999999987653 357998753211 11221 199999
Q ss_pred HHHHHHhcCCCcCCcccccc
Q 009742 79 WLEDSLRLGEKVSEDLYRIK 98 (527)
Q Consensus 79 Wl~ec~~~g~~v~~~~~~l~ 98 (527)
||.+|+-..++.+.+.|.|.
T Consensus 210 wlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 210 YIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHHHCSSCCCHHHHBCG
T ss_pred HHHHHHhcCCCCChhheEcc
Confidence 99999999999999999884
No 67
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.75 E-value=0.018 Score=64.08 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=62.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 320 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~ 320 (527)
+++..|+|+|++.+++|.+-++.-+-..+ ...+--| .|+|||+++|+.|.+. +.|++.|.++. .|...
T Consensus 480 ~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l--------~R~L~al-gi~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~i 549 (671)
T 2owo_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAAY-FGTLEALEAASIEELQKV 549 (671)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHHH-HCSHHHHHTCCHHHHTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHhcCCh--------hheehhh-cccCccHHHHHHHHHH-cCCHHHHHhCCHHHHhhc
Confidence 67899999999999999876654222111 2334444 8999999999999886 67899998653 57888
Q ss_pred hhccccchhhhccCcC
Q 009742 321 QRLGLKYFDDIKTRIP 336 (527)
Q Consensus 321 q~~Glk~yed~~~~i~ 336 (527)
.++|.+..+.+..-+.
T Consensus 550 ~GIG~~~A~sI~~ff~ 565 (671)
T 2owo_A 550 PDVGIVVASHVHNFFA 565 (671)
T ss_dssp TTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8899877777765543
No 68
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.66 E-value=0.012 Score=65.58 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=61.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 320 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~ 320 (527)
++|..|+|+|++.+++|.+-++. .+...-...+--| .|+|||+++|+.|.+. +.|++.|.++. .|...
T Consensus 475 e~L~~l~g~G~Ksa~nLl~aIe~--------sk~~~l~R~L~al-GI~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~I 544 (667)
T 1dgs_A 475 EDLLGLERMGEKSAQNLLRQIEE--------SKHRGLERLLYAL-GLPGVGEVLARNLARR-FGTMDRLLEASLEELIEV 544 (667)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHH--------GGGCCHHHHHHHT-TCSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHTS
T ss_pred HHHhcccccchhhHHHHHHHHHH--------HhcCcHHHhhHhh-ccCCccHHHHHHHHHH-cCCHHHHHhCCHHHHHhc
Confidence 67899999999999998766553 2221112234444 8999999999999875 67899998653 47788
Q ss_pred hhccccchhhhccCc
Q 009742 321 QRLGLKYFDDIKTRI 335 (527)
Q Consensus 321 q~~Glk~yed~~~~i 335 (527)
.++|.+..+.+...+
T Consensus 545 ~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 545 EEVGELTARAILETL 559 (667)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHH
Confidence 889988877776544
No 69
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=95.64 E-value=0.0027 Score=53.62 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCCCHHHHhhccCcchhhhccccchhhhcc
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 333 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~~L~~~q~~Glk~yed~~~ 333 (527)
..+.|+.||||||++|+++.+. +++|++||.+ ..++|-+.++.+..
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~------V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQILRE 70 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG------CTTCCHHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh------ccCCCHHHHHHHHH
Confidence 4567789999999999999987 8999999985 45677666666544
No 70
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=95.56 E-value=0.026 Score=54.33 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=57.4
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCC-------------CccEEEEeCcHH-HHHh------ccc
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-------------KVTHVLAMDLEA-LLQQ------SVI 75 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~-------------~VTHVV~~~~~~-~l~~------~vv 75 (527)
...|.|+.+||.+.- ... ++.|++++...||+|...+.+ ....||+++.+. +++. -++
T Consensus 120 ~~LF~G~~f~it~~~-~~~-~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~~~~v~ 197 (219)
T 3sqd_A 120 SPLFKAKYFYITPGI-CPS-LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVH 197 (219)
T ss_dssp SCTTTTEEEEECTTC-SSC-HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHTTCCCE
T ss_pred ccccCCcEEEEeCCC-CCC-HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHCCCcEE
Confidence 479999999997643 333 578999999999999988643 124556654432 2221 299
Q ss_pred cchHHHHHHhcCCCcCCccccc
Q 009742 76 RYQWLEDSLRLGEKVSEDLYRI 97 (527)
Q Consensus 76 ~~~Wl~ec~~~g~~v~~~~~~l 97 (527)
+.+|+..|+=..++ +.+.|.|
T Consensus 198 s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 198 NAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp ETHHHHHHHHHTCC-CTTTSBC
T ss_pred eHHHHHHHHHheee-cchhccc
Confidence 99999999996555 8888876
No 71
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0073 Score=50.74 Aligned_cols=84 Identities=8% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCCcCCeEEEEeeCCCCh----hHHHHHHHHHHhcCCEEEeecCCCc--cEEEEeCcHHHHHhccccchHHHHHHhcCC
Q 009742 15 SNGIFAGMRVFLVEKGVQN----RRLQIWRQKLVQMGATVEEKLSKKV--THVLAMDLEALLQQSVIRYQWLEDSLRLGE 88 (527)
Q Consensus 15 ~~~~f~~~~i~iv~~~~g~----~r~~~l~~~~~~~G~~v~~~~s~~V--THVV~~~~~~~l~~~vv~~~Wl~ec~~~g~ 88 (527)
....|.|+..||... -+. .-.+.|+++|..+||.|...+.++. .+.|....... +.-.|.++.+.+|+..+.
T Consensus 8 ~~~vF~g~~Fyin~d-~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t-~LpTVtpTYI~aC~~~nT 85 (106)
T 2l42_A 8 SGPPLSNMKFYLNRD-ADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT-NLPTVTPTYIKACCQSNS 85 (106)
T ss_dssp SSCSSCCCCBEECCS-SSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC-SSSBCCTTHHHHHHHSTT
T ss_pred cCccccCcEEEEcCC-CccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC-CCccccHHHHHHHHhcCc
Confidence 346699999999642 111 1468999999999999999986544 23332221100 122899999999999999
Q ss_pred CcCCcccccccC
Q 009742 89 KVSEDLYRIKLD 100 (527)
Q Consensus 89 ~v~~~~~~l~~~ 100 (527)
++++++|.+...
T Consensus 86 LLnv~~YLvp~d 97 (106)
T 2l42_A 86 LLNMENYLVPYD 97 (106)
T ss_dssp SCGGGGCCBCSC
T ss_pred eecccccccCch
Confidence 999999999654
No 72
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.24 E-value=0.014 Score=48.32 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=37.2
Q ss_pred hhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009742 279 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 279 ~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed~ 331 (527)
....+..|+.|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.+
T Consensus 27 ~~~~~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I 80 (91)
T 2a1j_B 27 VSRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 80 (91)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 3445667779999999999999986 33788888543 4666666776554443
No 73
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=95.02 E-value=0.014 Score=48.84 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.1
Q ss_pred HHhhccCcCHHHHHHHHHhCCCCHHHHhhcc
Q 009742 285 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315 (527)
Q Consensus 285 lf~~I~GvGpktA~~ly~~GirTledL~~~~ 315 (527)
-|+.+|+|||++++.|++.||.|++||+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3678999999999999999999999999654
No 74
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=94.88 E-value=0.02 Score=47.04 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=34.3
Q ss_pred hHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccc
Q 009742 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKY 327 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~ 327 (527)
......|..|+|||+++|++|.+. +.|+++|..+. .|....++|.+.
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~ 63 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQK 63 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHH
Confidence 345667779999999999999986 44788888643 355566666543
No 75
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.25 Score=50.11 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhcCCCeEEEecccccccCC-ccCCeeEEEecCCcch-hhhhHHHHHHHHHHcCcccceeeeccccCCCCC
Q 009742 343 MERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKS-HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTD 420 (527)
Q Consensus 343 i~~iv~~~~~~~~p~~~v~~~GsyRRGke-~~gDVDiLIt~~~~~~-~~~~l~~lv~~L~~~g~l~~~l~~s~~~~~~~~ 420 (527)
+-+.+++++.+..|++.|.+.||+++|.- -.+|||++|..|.... ...+|..+.+.|++.+...+..... .
T Consensus 45 ~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~-------~ 117 (323)
T 3nyb_A 45 TISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVA-------K 117 (323)
T ss_dssp HHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEE-------S
T ss_pred HHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEe-------c
Confidence 33444555555679999999999999976 3689999998877532 2457778888888887654321110 0
Q ss_pred CcceeeeeeeecCCCccceeeeEEEecCchhHHH-HH-Hh----cccHHHHHHHHHHHHHcCCc
Q 009742 421 SGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFG-LI-AW----TGNDVLNRRLRLLAESKGYR 478 (527)
Q Consensus 421 ~~~~~~~g~~~~~~~~~~~RVDl~v~p~~~f~~a-Ll-~~----TGS~~fnr~LR~~A~~kg~~ 478 (527)
..+-. .++..+..++.|||-+....-.-.+ ++ .| ..=+...+-++.||+.+|+.
T Consensus 118 ArVPI----Ik~~~~~~gi~vDIs~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~ 177 (323)
T 3nyb_A 118 ARVPI----IKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLN 177 (323)
T ss_dssp SSCEE----EEEEETTTTEEEEEESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCS
T ss_pred cCCCE----EEEEEcCCCceEEEEecCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC
Confidence 11111 1111111235888877654332222 21 12 23344556678899887764
No 76
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.61 E-value=0.011 Score=52.59 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCCCHHHHhhccCcchhhhcccc
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLK 326 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~~L~~~q~~Glk 326 (527)
..+.|+++|||||++|+++.+. .+.|+|||.+ ..++|-+
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~------V~GIg~k 100 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTER 100 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGG------CTTCCHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHh------CCCCCHH
Confidence 4566779999999999999987 8999999986 3456644
No 77
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=94.26 E-value=0.042 Score=52.55 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=37.8
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 244 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 244 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
.|.+|||||+..|..|.+-. |+ ++.+.+.. .+.|.+|+|||+++|+++++
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~f--gs---~~~l~~a~----~e~L~~v~GiG~~~a~~i~~ 212 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERF--GS---LERFFTAS----KAEISKVEGIGEKRAEEIKK 212 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHH--SS---HHHHTTCC----HHHHHHSTTCCHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHc--CC---HHHHHhCC----HHHHhhCCCCCHHHHHHHHH
Confidence 47799999999999988754 33 44444322 23467999999999999986
No 78
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.20 E-value=0.011 Score=47.46 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=35.4
Q ss_pred HHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009742 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed~ 331 (527)
...|..|+||||++|++|++. +.|+++|..+. .|....++|.+..+.+
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I 72 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKI 72 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHH
Confidence 334669999999999999987 34799988653 4666677776655544
No 79
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.14 E-value=0.022 Score=44.73 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhh
Q 009742 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDD 330 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed 330 (527)
....|+.|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~ 61 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKE 61 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHH
Confidence 4455679999999999999985 56788887643 366666666554443
No 80
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=94.03 E-value=0.044 Score=49.88 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=37.9
Q ss_pred CCcC-CeEEEEeeCCCC---h-------hHHHHHHHHHHhcCCEEEeecCCCccEEEEe
Q 009742 17 GIFA-GMRVFLVEKGVQ---N-------RRLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (527)
Q Consensus 17 ~~f~-~~~i~iv~~~~g---~-------~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~ 64 (527)
-+|+ +.++||-...-. . .+...|++.+...|++|++.++.+|||||+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~ 115 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 115 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEES
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEec
Confidence 5788 899999654432 1 1335677889999999999999999999974
No 81
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=93.66 E-value=0.042 Score=60.36 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=41.7
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 300 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l 300 (527)
...+|.+|||||++.|.+|.+ . -+..+++|.+....+ .+++|+|||+|||+++
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~---~-G~~s~edL~~a~~~~---~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWL---A-GIDSLERLREAAESG---ELAGLKGFGAKSAATI 147 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH---T-TCCSHHHHHHHHHHT---TTTTSTTCCHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHH---c-CCCCHHHHHHHHhhC---ccccCCCCCHHHHHHH
Confidence 467899999999999999875 3 556677776532222 5679999999999999
No 82
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=93.59 E-value=0.049 Score=45.52 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.3
Q ss_pred HHhhccCcCHHHHHHHHHhCCCCHHHHhhcc
Q 009742 285 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315 (527)
Q Consensus 285 lf~~I~GvGpktA~~ly~~GirTledL~~~~ 315 (527)
-|+.+|.|||++++.|.+.||.|++||+..+
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3678999999999999999999999999755
No 83
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.57 E-value=0.1 Score=50.66 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=43.4
Q ss_pred hhhcCCCCCCHHHHHHHH---HHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhC
Q 009742 243 DQVKGLPGIGKSMQDHIQ---EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 304 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~---Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 304 (527)
++|..+ |++..=++-|. +.+..|.++.++.+..-....+++.|++|+||||+||..+--.+
T Consensus 107 e~Lr~~-Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 107 ETLHEC-GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp HHHHTT-TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHc-CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 445443 78865444444 44557888777777665566789999999999999999986543
No 84
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.13 Score=46.51 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=39.8
Q ss_pred CCcCCeEEEEeeCCCCh----------hHHHHHHHHHHhcCCEEEeecCCCccEEEEeC
Q 009742 17 GIFAGMRVFLVEKGVQN----------RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g~----------~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~ 65 (527)
.|=++.+|||-.++... .+++.|++.+...|+.|++-++.+|||||+.-
T Consensus 20 IM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR 78 (151)
T 3oq0_A 20 HMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 78 (151)
T ss_dssp -CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESS
T ss_pred HhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 34488999998776431 26688999999999999999999999999754
No 85
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=93.18 E-value=0.64 Score=44.08 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=72.8
Q ss_pred HHHHHHhcCCccccch--hhhcC-CC--CCC--HHHHHHHHHHHHh---CCchhhHHHHhhchhHHHHHHhhccCcCHHH
Q 009742 227 KAIPVIEKLPFKIESA--DQVKG-LP--GIG--KSMQDHIQEIVTT---GKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 296 (527)
Q Consensus 227 rAa~~l~~l~~~i~s~--~~l~~-lp--gIG--~~ia~kI~Eil~t---G~~~~le~l~~~~~~~~l~lf~~I~GvGpkt 296 (527)
+|..+..+||..+... +++.. |. |+| ..=|..|.++.+. +.-..++.+....+..+.+.|+++|||||+|
T Consensus 50 ~~~~~~~~L~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kT 129 (207)
T 3fhg_A 50 SAYQALNCLGQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQE 129 (207)
T ss_dssp HHHHHHHHHGGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHH
Confidence 3445555556555433 34332 23 433 3445556665541 1112366666666768899999999999999
Q ss_pred HHHHHHh-CCCCHHHHh-hcc-CcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhc
Q 009742 297 AQKLYEK-GHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 354 (527)
Q Consensus 297 A~~ly~~-GirTledL~-~~~-~L~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~~~~~~ 354 (527)
|..+-.. |.. +.- -+. -..-++++|+-. +++...++..+..+++..+...++.+
T Consensus 130 A~~il~~~~~~---~~~~vD~~v~Ri~~rlg~~~-~~~~k~~~~k~y~~~~~~l~~~~~~~ 186 (207)
T 3fhg_A 130 ASHFLRNVGYF---DLAIIDRHIIDFMRRIGAIG-ETNVKQLSKSLYISFENILKSIASNL 186 (207)
T ss_dssp HHHHHHHTTCC---SSCCCCHHHHHHHHHTTSSC-CCCCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC---CcceecHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHHHHHHHh
Confidence 9998764 662 222 111 133445566532 12567788888888877777665543
No 86
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=93.11 E-value=0.13 Score=49.77 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=40.4
Q ss_pred CCCHHHHHHHH---HHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh
Q 009742 250 GIGKSMQDHIQ---EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 250 gIG~~ia~kI~---Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
|++..=+.-|. +.+..|.++.++.+..-....+++.|++|+||||+||..+--.
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 77765344333 4445788877788776666778999999999999999998654
No 87
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=93.06 E-value=0.017 Score=56.55 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=0.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh
Q 009742 242 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 242 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
..+|..|||||++.+.+|.+. | +..++.|.+. ..+.|.+|+|||+++|+++++.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~---g-f~sve~L~~a----~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREA---G-FESVEDVRGA----DQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp --------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHc---C-CCCHHHHHhC----CHHHHHhccCCCHHHHHHHHHH
Confidence 357899999999999998775 2 3345555422 3445669999999999999763
No 88
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=92.92 E-value=0.25 Score=40.89 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=25.4
Q ss_pred cCCCeEEEecccccccCCccC--CeeEEEecCC
Q 009742 354 VLPEVIILCGGSYRRGKASCG--DLDVVIMHPD 384 (527)
Q Consensus 354 ~~p~~~v~~~GsyRRGke~~g--DVDiLIt~~~ 384 (527)
..+...+.+-||+-||..+-+ |||++|..++
T Consensus 14 ~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 14 DVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 355678999999999998765 9999997654
No 89
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=92.76 E-value=0.12 Score=56.80 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=62.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 320 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~ 320 (527)
++|.+|+|+|++.+++|.+-++.-+-. +-.+.|--| .|++||.++|+.|-+ .+.|++.|.++. .|...
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~--------~l~r~l~aL-GI~~vG~~~a~~La~-~f~sl~~l~~a~~e~l~~i 549 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKET--------TFARFLYAL-GIREVGEATAAGLAA-YFGTLEALEAASIEELQKV 549 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBC--------CHHHHHHHT-TCTTCCHHHHHHHHH-HHCSHHHHHHCCHHHHTTS
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCC--------CHHHHHHHc-CCCchhHHHHHHHHH-HcCCHHHHHccCHHHHhcC
Confidence 789999999999999987766543322 223455566 999999999999865 466999998653 58888
Q ss_pred hhccccchhhhccCc
Q 009742 321 QRLGLKYFDDIKTRI 335 (527)
Q Consensus 321 q~~Glk~yed~~~~i 335 (527)
.++|-...+.+..-+
T Consensus 550 ~giG~~~A~si~~ff 564 (586)
T 4glx_A 550 PDVGIVVASHVHNFF 564 (586)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 899987777766544
No 90
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=92.74 E-value=0.066 Score=58.69 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=38.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 301 (527)
...+|.+++|||+++|.+|..-+-.-++..|...-.+.. ++++||||+|||+++.
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~------l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD------LTRLKGFGPKRAERIR 145 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTG------GGGSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCC------cccCCCCCccHHHHHH
Confidence 357899999999999998865432234444433222222 5799999999999984
No 91
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=92.49 E-value=0.063 Score=50.85 Aligned_cols=77 Identities=13% Similarity=0.265 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCchhhHHHHhhch-hHHHHHHhhccCcCHHHHHHHHH--h--CCCCHHHHhhc-cCc-chhhhccccc
Q 009742 255 MQDHIQEIVTTGKLSKLEHFEKDEK-VRTISLFGEVWGIGPATAQKLYE--K--GHRTLDDLKNE-DSL-THSQRLGLKY 327 (527)
Q Consensus 255 ia~kI~Eil~tG~~~~le~l~~~~~-~~~l~lf~~I~GvGpktA~~ly~--~--GirTledL~~~-~~L-~~~q~~Glk~ 327 (527)
+-..|+++++...-..++-+-...| .-.+..|..+|||||++|+++.+ + .++|++||.+. .-+ ....-+|-+.
T Consensus 102 Lp~~v~~iV~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~ 181 (205)
T 2i5h_A 102 LPYVIEHIIKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRI 181 (205)
T ss_dssp HHHHHHHHHHTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHH
Confidence 3344666665544333332221122 12445567899999999999974 2 79999999752 111 1223356555
Q ss_pred hhhh
Q 009742 328 FDDI 331 (527)
Q Consensus 328 yed~ 331 (527)
++.+
T Consensus 182 le~l 185 (205)
T 2i5h_A 182 IYEI 185 (205)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5555
No 92
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=92.34 E-value=0.034 Score=53.37 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=40.4
Q ss_pred hHHHHHHhhccCcCHHHHHHHHHh-CCCCHHH-Hhhc--cCcchhhhccccchhhh
Q 009742 280 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 331 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly~~-GirTled-L~~~--~~L~~~q~~Glk~yed~ 331 (527)
...+++|.+|+|||||+|..+... |..+|.. +... ..|++.+++|-|..+.|
T Consensus 84 r~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rI 139 (212)
T 2ztd_A 84 RDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERM 139 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 457777789999999999999986 8888874 3332 35889999998876543
No 93
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.25 Score=43.73 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=39.2
Q ss_pred CCcCCeEEEEeeCCCC---h-------hHHHHHHHHHHhcCCEEEeecCCCccEEEEeC
Q 009742 17 GIFAGMRVFLVEKGVQ---N-------RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (527)
Q Consensus 17 ~~f~~~~i~iv~~~~g---~-------~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~ 65 (527)
.|=++.+|||-.+-.. + .|++.|++.+.+.|+.|++-++.+|||||+.-
T Consensus 3 ~m~r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR 61 (134)
T 3oq4_A 3 HMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 61 (134)
T ss_dssp CCCTTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESS
T ss_pred cccccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 4556788998655322 1 16799999999999999999999999999754
No 94
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=91.93 E-value=0.093 Score=41.51 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=38.7
Q ss_pred HHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009742 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed~ 331 (527)
..++|+++.||+...|++|.+.||.|+++|--.. .|....+|.-..-+++
T Consensus 4 ~~~~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l 55 (70)
T 1u9l_A 4 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 55 (70)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHH
Confidence 5678999999999999999999999999998542 3555555554444443
No 95
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=91.45 E-value=0.17 Score=41.35 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=28.2
Q ss_pred hHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
.....+|..|||||||+++.|.+ .+.|+++|.++
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~A 47 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 47 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHS
T ss_pred ccHHHHHHhCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 44566778999999999999986 67788888864
No 96
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=91.28 E-value=0.063 Score=50.69 Aligned_cols=51 Identities=29% Similarity=0.375 Sum_probs=36.8
Q ss_pred HHHHHHhhccCcCHHHHHHHHHh-CCCCHHH-Hhhcc--Ccchhhhccccchhhh
Q 009742 281 RTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNED--SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 281 ~~l~lf~~I~GvGpktA~~ly~~-GirTled-L~~~~--~L~~~q~~Glk~yed~ 331 (527)
..++.|.+|+|||||+|..+... |-.++.+ +.++. .|++.+++|-+..+.+
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 123 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERI 123 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 45667779999999999999986 7766654 33332 4778888887665543
No 97
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=91.23 E-value=0.054 Score=60.28 Aligned_cols=49 Identities=27% Similarity=0.372 Sum_probs=41.6
Q ss_pred hccCcCHHHHHHHHHh-CCCCHHHHhhcc--CcchhhhccccchhhhccCcC
Q 009742 288 EVWGIGPATAQKLYEK-GHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIP 336 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~-GirTledL~~~~--~L~~~q~~Glk~yed~~~~i~ 336 (527)
.|+|+|+|++.+||+. +++|+.||.... +|..+.+||-|..+.+...|.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe 496 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIE 496 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHHH
Confidence 8999999999999998 789999998643 577788999888888876553
No 98
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=91.17 E-value=0.13 Score=53.62 Aligned_cols=49 Identities=29% Similarity=0.472 Sum_probs=32.2
Q ss_pred HHHHhhccCcCHHHHHHHHHh-CC------CCHHHHhhccCcchhh---hccccchhhhc
Q 009742 283 ISLFGEVWGIGPATAQKLYEK-GH------RTLDDLKNEDSLTHSQ---RLGLKYFDDIK 332 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~~-Gi------rTledL~~~~~L~~~q---~~Glk~yed~~ 332 (527)
..++++|+||||.||++|.+. |= -|.+||+.+| +...| -.||+..+.+.
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedG-IGekqarrI~gl~~l~~~~ 525 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDG-LTDAQIRELKGLKTLESIV 525 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTT-CCHHHHHHHHTCHHHHHHS
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHcc-ccHHHHHHHhhHHHHHHHh
Confidence 568889999999999999987 52 4666775432 22222 13666655543
No 99
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=90.97 E-value=0.036 Score=61.73 Aligned_cols=49 Identities=29% Similarity=0.297 Sum_probs=40.6
Q ss_pred hhccCcCHHHHHHHHHh-CCCCHHHHhhc--cCcchhhhccccchhhhccCc
Q 009742 287 GEVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI 335 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~-GirTledL~~~--~~L~~~q~~Glk~yed~~~~i 335 (527)
+.|+|+|+|++.+||+. +|+|++||... .+|..+.+||-|..+.+...|
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aI 500 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHH
Confidence 39999999999999998 67999999853 357778889988877776544
No 100
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=90.93 E-value=0.3 Score=47.80 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=55.4
Q ss_pred eEEEEeeCCCC-hhHHHHHHHHHHhcCCEEEeecCC--CccEEEEeC---cHHHHHh-------ccccchHHHHHHhc--
Q 009742 22 MRVFLVEKGVQ-NRRLQIWRQKLVQMGATVEEKLSK--KVTHVLAMD---LEALLQQ-------SVIRYQWLEDSLRL-- 86 (527)
Q Consensus 22 ~~i~iv~~~~g-~~r~~~l~~~~~~~G~~v~~~~s~--~VTHVV~~~---~~~~l~~-------~vv~~~Wl~ec~~~-- 86 (527)
+.|..+-+|.- ...-..=++.+++.|..|.+..+. .++|++|-. ....|+. ++|+++|+++|++.
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih 100 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIH 100 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC
T ss_pred eeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhh
Confidence 55555657766 332233357889999999988864 799999855 4444553 28999999999999
Q ss_pred -CC------CcCCcccccc
Q 009742 87 -GE------KVSEDLYRIK 98 (527)
Q Consensus 87 -g~------~v~~~~~~l~ 98 (527)
|+ +++.++|.|.
T Consensus 101 ~~~~~~~~~~l~~~dY~L~ 119 (256)
T 3t7k_A 101 SKKDKLSQININLFDYEIN 119 (256)
T ss_dssp -------CCCCCSSTTBCT
T ss_pred cCCcccccccCChhhccCC
Confidence 88 7888999884
No 101
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=90.78 E-value=0.15 Score=39.23 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=24.9
Q ss_pred HHHhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 284 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 284 ~lf~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
..|.+||||||++++.|.+ .+.|+++|.++
T Consensus 4 s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~A 33 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 33 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HCSSHHHHHTC
T ss_pred hHHHcCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 4567999999999999996 56688888864
No 102
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=90.65 E-value=1.1 Score=38.31 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhcCCCe-EEEecccccccCC-ccCCeeEEEecCC
Q 009742 343 MERLLQKAGEEVLPEV-IILCGGSYRRGKA-SCGDLDVVIMHPD 384 (527)
Q Consensus 343 i~~iv~~~~~~~~p~~-~v~~~GsyRRGke-~~gDVDiLIt~~~ 384 (527)
+.+++..++.. .|++ .+.+-||+-||.. ..+||||+|..++
T Consensus 19 l~~~~~~l~~~-~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 19 AKEIVEEVASS-FPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHH-cCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 45666655543 4676 6889999999985 3589999996554
No 103
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=90.61 E-value=0.079 Score=50.50 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=37.6
Q ss_pred hHHHHHHhhccCcCHHHHHHHHHh-CCCCHHH-Hhhcc--Ccchhhhccccchhhh
Q 009742 280 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNED--SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly~~-GirTled-L~~~~--~L~~~q~~Glk~yed~ 331 (527)
...++.|.+|+|||||+|..+... |..+|-+ +.++. .|++.+++|-+..+.+
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 124 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERL 124 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 345667779999999999999986 7666654 44332 5788888887765544
No 104
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=90.22 E-value=0.19 Score=39.67 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=26.2
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+..++|||+.++.+|-+.||.|++||-..
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~ 37 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQ 37 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 34889999999999999999999999854
No 105
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=89.79 E-value=0.16 Score=51.98 Aligned_cols=29 Identities=41% Similarity=0.767 Sum_probs=26.4
Q ss_pred hhccCcCHHHHHHHHHhCCCCHHHHhhcc
Q 009742 287 GEVWGIGPATAQKLYEKGHRTLDDLKNED 315 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~GirTledL~~~~ 315 (527)
..|||||++++++|.+.||+|+.||.+..
T Consensus 181 ~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~ 209 (356)
T 4dez_A 181 DALWGVGPKTTKKLAAMGITTVADLAVTD 209 (356)
T ss_dssp GGSTTCCHHHHHHHHHTTCCSHHHHHTSC
T ss_pred HHHcCCchhHHHHHHHcCCCeecccccCC
Confidence 57999999999999999999999998643
No 106
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=89.74 E-value=0.3 Score=49.40 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=44.4
Q ss_pred cCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEeecCCCccEEEEeC--cHH----HHHh-----ccccchHHHHHHhc
Q 009742 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD--LEA----LLQQ-----SVIRYQWLEDSLRL 86 (527)
Q Consensus 19 f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~~~s~~VTHVV~~~--~~~----~l~~-----~vv~~~Wl~ec~~~ 86 (527)
+..+++.+ + .+.-++.|++.+.+.|+.+.+..++.+||||+.. ... .|.- .||+.+||.+..+.
T Consensus 113 W~P~Vl~~-S---ske~~~~L~~~L~~LGik~v~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 113 WRSMCIQF-D---NPEMLSQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp ECCCCEEE-S---CHHHHHHHHHHHHTTTCCEESSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred EeeeEEEe-c---CHHHHHHHHHHHHHcCCEEEEccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence 55666666 1 3233455999999999999944488899999963 211 2222 29999999997543
No 107
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.23 E-value=0.33 Score=37.27 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=34.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHH-HHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~ 302 (527)
+.|.+|||||++-+..+-. .-|++. ++++- .++.|.+| +|+++ |+++|+
T Consensus 4 s~L~~IpGIG~kr~~~LL~--~Fgs~~---~i~~A----s~eeL~~v--ig~~~~A~~I~~ 53 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH--HVKNIA---ELAAL----SQDELTSI--LGNAANAKQLYD 53 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH--HCSSHH---HHHTC----CHHHHHHH--HSCHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHH--HcCCHH---HHHHC----CHHHHHHH--cCchHHHHHHHH
Confidence 4688999999998887654 344444 44432 24445566 78999 999997
No 108
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=89.19 E-value=0.6 Score=44.94 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh
Q 009742 250 GIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 250 gIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
|++..=++.|.+ .+..|.+. ++.+..-....+++.|++|+||||+||..+--.
T Consensus 110 G~~~~KA~~i~~lA~~~~~g~~~-l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 110 GLSWAKVRTVQAAAAAAVSGQID-FAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSSC-GGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCcC-HHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 666543444443 34457652 455554445567888889999999999988654
No 109
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=88.44 E-value=0.97 Score=45.12 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=37.9
Q ss_pred hhhcCCCCCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
++|..+ |+|-+ ++-|.+ .+..|.+ .++.+..-....+++.|+++|||||+||..+--.
T Consensus 170 e~L~~~-g~g~R-a~~I~~~A~~i~~g~~-~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 170 KDFEEC-TAGFR-AKYLKDTVDRIYNGEL-NLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp HHHHHT-TCGGG-HHHHHHHHHHHHTTSS-CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHc-CCchH-HHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 455553 67765 444443 3445654 3455554455668888899999999999988643
No 110
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=88.42 E-value=0.072 Score=51.58 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
..|.+|||||++.++++.+.. |++..+ .+ -..+.|.+| |||+++|+.+|+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F--GSl~~i---~~----As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF--GSVKKM---KE----ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHh--CCHHHH---Hh----CCHHHHHHc-CCCHHHHHHHHH
Confidence 468899999999999887753 444443 32 134567799 999999999986
No 111
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=88.32 E-value=0.81 Score=47.92 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHHHHHHhhhcCCCeEEEecccccccCCc-cCCeeEEEecCCcchhhhhHHHHHHHHHHc
Q 009742 344 ERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 402 (527)
Q Consensus 344 ~~iv~~~~~~~~p~~~v~~~GsyRRGke~-~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~ 402 (527)
...|+.++....|++.|.+.||++.|.-+ .+|||++|..+.......++.++.+.|++.
T Consensus 69 ~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~~ 128 (405)
T 4e8f_A 69 LDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAE 128 (405)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC---CTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 33444455556899999999999999877 789999998876433345677777777775
No 112
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=87.93 E-value=0.17 Score=43.79 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=34.1
Q ss_pred HHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccc
Q 009742 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKY 327 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~ 327 (527)
.+..|..+ ||||.++++|.+.||.|+++|.... .|...+++|-..
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~k 70 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAK 70 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHH
Confidence 34555455 9999999999999999999998543 466666666443
No 113
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=87.70 E-value=0.27 Score=47.26 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHh-CCchhhHHHHhhchhHHHHHHh-hccCcCHHHHHHHHHh-CCCCHHHHhh-c-cCcchhhhccccc
Q 009742 253 KSMQDHIQEIVTT-GKLSKLEHFEKDEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLDDLKN-E-DSLTHSQRLGLKY 327 (527)
Q Consensus 253 ~~ia~kI~Eil~t-G~~~~le~l~~~~~~~~l~lf~-~I~GvGpktA~~ly~~-GirTledL~~-~-~~L~~~q~~Glk~ 327 (527)
..=|..|.++.+. |. +.++.......+++.|+ ++||||||||..+... |.. +.-- + .-+.-+.++|+-
T Consensus 100 ~~KA~~I~~~a~~ig~---l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~---~~~~VDthv~Ri~~rlg~~- 172 (219)
T 3n0u_A 100 QKRAEFIVENRKLLGK---LKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVE---DLAILDKHVLRLMKRHGLI- 172 (219)
T ss_dssp HHHHHHHHHHGGGTTT---HHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTCC---SCCCCCHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHHHHH---HHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCC---CeeeecHHHHHHHHHcCCC-
Confidence 3444555555432 32 34444445567889999 9999999999988653 552 1111 1 112334555652
Q ss_pred hhhhccCcCHHHHHHHHHHHHHHhhh
Q 009742 328 FDDIKTRIPRHEVEQMERLLQKAGEE 353 (527)
Q Consensus 328 yed~~~~i~r~Ea~~i~~iv~~~~~~ 353 (527)
.......+.....++++.+.+.+.+
T Consensus 173 -~~~~k~~t~k~y~~ie~~~~~~a~~ 197 (219)
T 3n0u_A 173 -QEIPKGWSKKRYLYVEEILRKVAEA 197 (219)
T ss_dssp -SSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -CcCcCcCCHHHHHHHHHHHHHHHHH
Confidence 2234566777777777777766544
No 114
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=87.65 E-value=0.18 Score=51.65 Aligned_cols=29 Identities=38% Similarity=0.396 Sum_probs=26.3
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 180 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~ 208 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLGINKLVDTLSI 208 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTTCCBGGGGGSS
T ss_pred CCcccccCHHHHHHHHHcCCchHHHHHCC
Confidence 36899999999999988999999999864
No 115
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=87.32 E-value=2.2 Score=36.19 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHHHHHHhhhcCCCeEEEecccccccCC-ccCCeeEEEecCCc
Q 009742 335 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDR 385 (527)
Q Consensus 335 i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRGke-~~gDVDiLIt~~~~ 385 (527)
++..+.+.+.+++++ ..+...+.+-|||-||.. ..+||||+|..+++
T Consensus 9 l~~~~~~~i~~~l~~----~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 56 (114)
T 1no5_A 9 IKSEELAIVKTILQQ----LVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEP 56 (114)
T ss_dssp SCHHHHHHHHHHHHH----HCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSC
T ss_pred CCHHHHHHHHHHHHH----hCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCC
Confidence 445555666555554 234457889999999974 45899999976653
No 116
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=87.11 E-value=0.3 Score=51.40 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=26.4
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+..|||||++++++|-+.||+|+.||.+.
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~TigdLa~~ 264 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGINSVRDLQTF 264 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHS
T ss_pred HHHccCCCHHHHHHHHHhCCCcHHHHhhC
Confidence 46899999999999999999999999864
No 117
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=86.95 E-value=0.22 Score=47.86 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=23.4
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 186 v~~l~giG~~~~~~L~~~Gi~TigdL~~~ 214 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGIQKLRDILSK 214 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBTTC----
T ss_pred cccccCCCHHHHHHHHHcCCCcHHHHHCC
Confidence 36899999999999999999999999853
No 118
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=86.87 E-value=5.3 Score=43.06 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=39.2
Q ss_pred CCCeEEEecccccccCCc-cCCeeEEEecCCcchhhhhHHHHHHHHHHcCccc
Q 009742 355 LPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 406 (527)
Q Consensus 355 ~p~~~v~~~GsyRRGke~-~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g~l~ 406 (527)
.++++|.+.||||-|--. .+|||+++..|.......+|..+.+.|++...+.
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~v~ 144 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVK 144 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTTEE
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCccCc
Confidence 467899999999999753 5799999988765444567777778887755443
No 119
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=86.52 E-value=0.13 Score=56.61 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhhcCCCCC------CHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc-
Q 009742 243 DQVKGLPGI------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 315 (527)
Q Consensus 243 ~~l~~lpgI------G~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~- 315 (527)
++|..|+|+ |++.++++.+-++.-+-. +-...|--| .|+|||+++|+.|.+. +.|++.|.++.
T Consensus 491 ~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~--------~l~r~L~aL-GIp~VG~~~ak~La~~-Fgsle~L~~As~ 560 (615)
T 3sgi_A 491 RDLLRTDLFRTKAGELSANGKRLLVNLDKAKAA--------PLWRVLVAL-SIRHVGPTAARALATE-FGSLDAIAAAST 560 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccccccccCccchHHHHHHHHHHHhcCC--------CHHHHHHHc-CCCCCCHHHHHHHHHH-cCCHHHHHhCCH
Confidence 567777755 577777776655532222 223345556 8999999999999654 67999998653
Q ss_pred -CcchhhhccccchhhhccCcCHHH
Q 009742 316 -SLTHSQRLGLKYFDDIKTRIPRHE 339 (527)
Q Consensus 316 -~L~~~q~~Glk~yed~~~~i~r~E 339 (527)
.|....++|.+..+.+..-+.-.+
T Consensus 561 eeL~~I~GIG~~~A~sI~~ff~~~~ 585 (615)
T 3sgi_A 561 DQLAAVEGVGPTIAAAVTEWFAVDW 585 (615)
T ss_dssp -------------------------
T ss_pred HHHhhCCCCCHHHHHHHHHHHcCHH
Confidence 588888999888887776654433
No 120
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=86.51 E-value=0.32 Score=52.47 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=26.0
Q ss_pred hhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 287 GEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
..+||||++++++|.+.||+|+.||.+.
T Consensus 318 ~~l~GIG~~t~~kL~~lGI~TigDLa~~ 345 (504)
T 3gqc_A 318 TNLPGVGHSMESKLASLGIKTCGDLQYM 345 (504)
T ss_dssp GGSTTCCHHHHHHHHHTTCCBHHHHTTS
T ss_pred hHhhCcCHHHHHHHHHcCCCcHHHHHhc
Confidence 5889999999999999999999999864
No 121
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=85.97 E-value=0.77 Score=45.91 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=42.1
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCC
Q 009742 244 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 306 (527)
Q Consensus 244 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gir 306 (527)
+|..+ |++..=++-|.++.+.| .++.+..-....+++.|++|+||||+||..+--.++.
T Consensus 174 ~Lr~~-G~~~rKa~~i~~~A~~g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 174 GLREC-GLSRRKAELIVEIAKEE---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHT-TCCHHHHHHHHHHHTCS---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHCC---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 44443 77877788888888775 3444443334557888889999999999998765544
No 122
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=85.81 E-value=0.21 Score=51.09 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=26.2
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~ 209 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSK 209 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTCCBGGGGGGS
T ss_pred cccccCcCHHHHHHHHHcCCccHHHHhcC
Confidence 36899999999999988899999999864
No 123
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=85.78 E-value=7.8 Score=41.91 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=38.6
Q ss_pred CeEEEecccccccCC-ccCCeeEEEecCCcchhhhhHHHHHHHHHHcCccc
Q 009742 357 EVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 406 (527)
Q Consensus 357 ~~~v~~~GsyRRGke-~~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g~l~ 406 (527)
+++|.+.||||-|-- -.+|||+++..|.......+|..+.+.|++.+.+.
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~v~ 131 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKELD 131 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTTEE
T ss_pred CceEEEecccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCCCc
Confidence 789999999999975 35899999988865444567888888887765444
No 124
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=85.67 E-value=0.35 Score=53.76 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=30.9
Q ss_pred hchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc
Q 009742 277 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315 (527)
Q Consensus 277 ~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~ 315 (527)
-.+...+.|+ +|||||+.+|++||+.|++|++||. ..
T Consensus 651 gv~~e~~~L~-qlp~i~~~rar~L~~~g~~s~~~l~-~~ 687 (715)
T 2va8_A 651 GIKEELLELV-QISGVGRKRARLLYNNGIKELGDVV-MN 687 (715)
T ss_dssp TCCGGGHHHH-TSTTCCHHHHHHHHHTTCCSHHHHH-HC
T ss_pred CCChhhcchh-hCCCCCHHHHHHHHHcCCCCHHHHh-CC
Confidence 3444456676 9999999999999999999999998 53
No 125
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=85.51 E-value=1.9 Score=41.28 Aligned_cols=81 Identities=11% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCCcCCeEEEEeeCCCChhHHHHHHHHHHhcCCEEEe---e--c-----CCCccEEEEeCcHHH----HHh--------c
Q 009742 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE---K--L-----SKKVTHVLAMDLEAL----LQQ--------S 73 (527)
Q Consensus 16 ~~~f~~~~i~iv~~~~g~~r~~~l~~~~~~~G~~v~~---~--~-----s~~VTHVV~~~~~~~----l~~--------~ 73 (527)
...|.|+.+||.+.-....-.+.|+.+++..||+|.. + . +++-.+||+...+.. ++. .
T Consensus 111 ~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~ 190 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIF 190 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEE
T ss_pred chhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEE
Confidence 5899999999986542122358899999999999998 1 1 012257777755442 111 1
Q ss_pred cccchHHHHHHhcCCCcCCccccc
Q 009742 74 VIRYQWLEDSLRLGEKVSEDLYRI 97 (527)
Q Consensus 74 vv~~~Wl~ec~~~g~~v~~~~~~l 97 (527)
+++.+|+..++=..+ ++++++.+
T Consensus 191 i~~~e~ll~~il~q~-l~~~~~~~ 213 (220)
T 3l41_A 191 LQNYDWLIKTVLRQE-IDVNDRIA 213 (220)
T ss_dssp EEEHHHHHHHHHHTC-CCTTCCBC
T ss_pred EechhHHHHHHHHHH-cCcchHHH
Confidence 899999999987554 45444433
No 126
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=85.19 E-value=0.23 Score=55.40 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=29.0
Q ss_pred hHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
...+.|+ +|||||..+|+++|+.|++|+.||.+.
T Consensus 643 ~e~~~L~-qlp~v~~~rar~L~~~G~~s~~dl~~~ 676 (720)
T 2zj8_A 643 EELIPLM-QLPLVGRRRARALYNSGFRSIEDISQA 676 (720)
T ss_dssp GGGGGGT-TSTTCCHHHHHHHHTTTCCSHHHHHTC
T ss_pred ccchhhh-hCCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 3344455 999999999999999999999999864
No 127
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=85.16 E-value=0.43 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHHHhhccCcCHHHHHHHHHh-----CCCCHHHHhhccCcchhhhccccchhhh
Q 009742 283 ISLFGEVWGIGPATAQKLYEK-----GHRTLDDLKNEDSLTHSQRLGLKYFDDI 331 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~~-----GirTledL~~~~~L~~~q~~Glk~yed~ 331 (527)
...|..|+|||+++|+++.+. .+.+++||.+ ..++|.+.++.|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~------v~Gig~k~~~~l 86 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER------VEGITGKQMESF 86 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHh------CCCCCHHHHHHH
Confidence 345669999999999999852 4778888643 344555544443
No 128
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=84.81 E-value=0.46 Score=50.12 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=26.8
Q ss_pred HhhccCcCHHHHHHHHH--hCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYE--KGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~--~GirTledL~~~ 314 (527)
+..+||||++|+++|.+ .||+|+.||.+.
T Consensus 243 v~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 46899999999999999 899999999975
No 129
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=83.92 E-value=0.62 Score=48.26 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=26.8
Q ss_pred hHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhh
Q 009742 280 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed~ 331 (527)
+...+++.+||+|||+.|++|.+. |-||+.|.++. .|....++|-+....+
T Consensus 311 prGyRiLs~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~VeGIGe~rAr~I 363 (377)
T 3c1y_A 311 ARGYRLLKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKKVEGIGEKRARAI 363 (377)
T ss_dssp CCSHHHHHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTTSTTCCHHHHHHH
T ss_pred chHHHHHhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHhccCccHHHHHHH
Confidence 344556666666666666666653 23555555432 2444455554444443
No 130
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=83.80 E-value=6 Score=40.27 Aligned_cols=128 Identities=14% Similarity=0.112 Sum_probs=68.2
Q ss_pred HHHH-HHHHHHHHHHhhhcCCCeEEEeccccc-ccCC-ccCCeeEEEecCC----cc-----------hhhhhHHHHHHH
Q 009742 337 RHEV-EQMERLLQKAGEEVLPEVIILCGGSYR-RGKA-SCGDLDVVIMHPD----RK-----------SHKGFLSKYVKK 398 (527)
Q Consensus 337 r~Ea-~~i~~iv~~~~~~~~p~~~v~~~GsyR-RGke-~~gDVDiLIt~~~----~~-----------~~~~~l~~lv~~ 398 (527)
|.++ +.++++++. ..|+++|.+-|||+ -|-- -.+|||++|..|. +. ....+|.++-+.
T Consensus 49 r~~~~~~l~~~i~~----~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 124 (353)
T 2ikf_A 49 VDATYRLVLDCVAA----VDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARV 124 (353)
T ss_dssp HHHHHHHHHHHHHH----HCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHH
Confidence 4443 335555554 58999999999998 6653 4689999997542 10 013466666667
Q ss_pred HHHcCcccceeeeccccCCCCCCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHH------hcccHHHHHHHHHHH
Q 009742 399 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIA------WTGNDVLNRRLRLLA 472 (527)
Q Consensus 399 L~~~g~l~~~l~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~RVDl~v~p~~~f~~aLl~------~TGS~~fnr~LR~~A 472 (527)
|++.+...+..... +..+-... |.. + ..+.+||-+....-...+-+. +--=+...+-++.||
T Consensus 125 L~~~~~~~~v~~i~-------~ArVPIiK--~~~-~--~~i~~Dis~~n~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa 192 (353)
T 2ikf_A 125 IRQKHLSWNVEEVR-------RTRVPVVR--VKG-G--GAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWS 192 (353)
T ss_dssp HHHHCTTSEEEEEC-------SSSSCEEE--EEC-S--SSCEEEEEESCCHHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEec-------ccceeEEE--EEc-C--CCcEEEEEecCccHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 77766543221110 01111111 111 1 245788877654332222111 112234456678899
Q ss_pred HHcCCccC
Q 009742 473 ESKGYRLD 480 (527)
Q Consensus 473 ~~kg~~L~ 480 (527)
+.+|+.=+
T Consensus 193 ~~r~l~~~ 200 (353)
T 2ikf_A 193 KQTGLNAS 200 (353)
T ss_dssp HHTTCBTT
T ss_pred HHcCCCCC
Confidence 88775433
No 131
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=83.62 E-value=0.9 Score=37.04 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=34.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHH-HHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYEK 303 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~~ 303 (527)
..|..|||||++-+..+.. .-|++..+ ++- .++.|..| ||.+. |+++|+-
T Consensus 18 s~L~~IpGIG~kr~~~LL~--~FgSl~~i---~~A----S~eEL~~v--ig~~~~A~~I~~~ 68 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH--HVKNIAEL---AAL----SQDELTSI--LGNAANAKQLYDF 68 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH--HSSCHHHH---HHS----CHHHHHHH--HSCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH--HcCCHHHH---HHC----CHHHHHHH--hCchHHHHHHHHH
Confidence 4588999999998887754 44555444 332 24445566 78999 9999984
No 132
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=83.50 E-value=1.5 Score=42.25 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=36.4
Q ss_pred hhhcCCCCCCHHHHHHHHHH---HHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEI---VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Ei---l~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
++|..+ |++..=++.|.++ +..|.+ .++.+..-....+++.|++|+||||+||..+--.
T Consensus 96 e~Lr~~-G~~~~KA~~I~~~A~~i~~~~~-~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 96 EALRQA-GVSKRKIEYIRHVCEHVESGRL-DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSS-CHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 344333 6776544444443 344543 2344443334468888889999999999998654
No 133
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=83.25 E-value=1 Score=51.07 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=40.8
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
+.++|..|||||+..|+.|.++.+ .|.+...++|. +|+|+|+++..++-.
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~------------~V~giG~k~~ekl~~ 556 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELK------------KVSRLGEKTFEQAAG 556 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGG------------GSTTCCHHHHHHHGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHH------------hcCCCCHHHHHHhhh
Confidence 457899999999999999999874 57777666653 789999998888765
No 134
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=82.90 E-value=0.26 Score=50.81 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=25.8
Q ss_pred hhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 287 GEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
..+||||++++++|.+.||+|+.||.+.
T Consensus 182 ~~l~GiG~~~~~~L~~~GI~Ti~dL~~~ 209 (362)
T 4f4y_A 182 DEIPGIGSVLARRLNELGIQKLRDILSK 209 (362)
T ss_dssp TTSTTCCSTTHHHHHHTTCCBGGGGTTS
T ss_pred hhccCCCHHHHHHHHHcCCChHHHHhcC
Confidence 5789999999999999999999999864
No 135
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=82.72 E-value=0.21 Score=54.78 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=40.1
Q ss_pred hhccCcCHHHHHHHHHhC-CCCHHHHhh--ccCcchhhhccccchhhhccCc
Q 009742 287 GEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRLGLKYFDDIKTRI 335 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~G-irTledL~~--~~~L~~~q~~Glk~yed~~~~i 335 (527)
++|.|+|++++++|++.| |+++.||.. ...|..+.+||-+..+.+...|
T Consensus 449 mdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 479999999999999997 499999984 3457778888888877776554
No 136
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=82.72 E-value=2.2 Score=43.22 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHhhhcCCCeEEEecccccccCCc-cCCeeEEEecCCcchhhhhHHHHHHHHHHcC
Q 009742 345 RLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 403 (527)
Q Consensus 345 ~iv~~~~~~~~p~~~v~~~GsyRRGke~-~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g 403 (527)
+.|+.+.....|+++|.+-|||+-|--+ .+|||++|..|.......++..+...+...+
T Consensus 42 ~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~~~~~~~~~~ 101 (349)
T 4fh3_A 42 DTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEG 101 (349)
T ss_dssp HHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHHHHHHHHhhc
Confidence 3344445557899999999999999755 4699999988776555555555666555544
No 137
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=82.59 E-value=0.65 Score=44.15 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=34.2
Q ss_pred HHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhh
Q 009742 282 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDD 330 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed 330 (527)
...+++.|+|||+++|+.|.+. +.|+++|.++. .|....++|-+..+.
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v~GiG~~~a~~ 209 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEE 209 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhCCCCCHHHHHH
Confidence 3445679999999999999986 44588887543 366666666555443
No 138
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=81.37 E-value=1.7 Score=34.10 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=38.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
+++..|||||..++.+..| .| +.-+|.+.. ...+-|..|.|++..+|.++..
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e---~G-i~TvedlA~----~~~~eL~~i~gise~kA~~ii~ 58 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAA---RG-VCTLEDLAE----QGIDDLADIEGLTDEKAGALIM 58 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHT---TT-CCSHHHHHT----SCHHHHHTSSSCCHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHH---cC-CCcHHHHHc----CCHHHHHHccCCCHHHHHHHHH
Confidence 5789999999999887654 44 455666543 2345556899999999999974
No 139
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=80.81 E-value=3.2 Score=41.79 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=40.6
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhcc--CcchhhhccccchhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEE
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 361 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~~~~~~~p~~~v~ 361 (527)
|.++||||+..++++++.|++|++||.... .+.. +. .++-.++..+.+++.. .|.+.+.
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~-----------ll-~~~~~~~~~v~~~~~~-----~P~l~v~ 219 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMALEDEERDE-----------IL-TLTDSQLAQVAAFVNN-----YPNVELT 219 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHH-----------HC-CCCHHHHHHHHHHHHH-----CCCEEEE
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHh-----------Hh-CCCHHHHHHHHHHHHh-----CCCEEEE
Confidence 459999999999999999999999998532 1211 11 2444555666555554 7877543
No 140
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=80.64 E-value=0.84 Score=43.53 Aligned_cols=20 Identities=45% Similarity=0.699 Sum_probs=18.4
Q ss_pred HHHHHHhhccCcCHHHHHHH
Q 009742 281 RTISLFGEVWGIGPATAQKL 300 (527)
Q Consensus 281 ~~l~lf~~I~GvGpktA~~l 300 (527)
..++.|.++||||||+|+++
T Consensus 23 ~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHH
Confidence 47889999999999999998
No 141
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=78.83 E-value=1.1 Score=48.43 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=25.8
Q ss_pred hhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 287 GEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
..|||||++|+++|-..||+|+.||.+.
T Consensus 341 ~kl~GIG~~t~~~L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 341 RKVSGIGKVTEKMLKALGIITCTELYQQ 368 (517)
T ss_dssp GGSTTCCHHHHHHHHHTTCCBHHHHHHH
T ss_pred hhhccccHHHHHHHHHhCCCcHHHHHhh
Confidence 5799999999999999999999999863
No 142
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=78.79 E-value=1.4 Score=36.54 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=37.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
|+.+|..||+||+++++...++ -+.-+++|+..-+..+..-+... |..|-. ..||.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~-~~L~a 57 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRIWEN-DSSVCM-SELYA 57 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHHHHHHHHTT-CTTCCH-HHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHHHHH-CCCCCH-HHHHH
Confidence 5788999999999998876544 45667777765555555555444 555544 55554
No 143
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=78.77 E-value=1.3 Score=42.60 Aligned_cols=49 Identities=24% Similarity=0.498 Sum_probs=35.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCH-HHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP-ATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp-ktA~~ly~ 302 (527)
..|.+|||||++.++++..-. |++ +.+.+.. .+.|.+| ||+ ++|+.+|+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F--gSl---~~i~~As----~EeL~~V--IG~~~~A~~I~~ 217 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF--GSL---ENIRSAS----LEEIARV--IGSTEIARRVLD 217 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSH---HHHHTSC----HHHHHHH--HTCHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc--CCH---HHHHhCC----HHHHHHH--hChHHHHHHHHH
Confidence 358999999999999987743 444 4444322 3455677 999 99999986
No 144
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=78.55 E-value=1.1 Score=43.22 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.4
Q ss_pred hHHHHHHhhccCcCHHHHHHHH
Q 009742 280 VRTISLFGEVWGIGPATAQKLY 301 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly 301 (527)
...++.|.++||||||+|+++-
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHH
Confidence 3578899999999999999993
No 145
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=78.21 E-value=0.43 Score=46.11 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhhc
Q 009742 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 332 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed~~ 332 (527)
-..|..|+|||+++|++|.+. +.|++.|.++. .|... ++|-+..+.+.
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~V-GIG~~~A~~I~ 221 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRA-NIPRAVAEKIY 221 (226)
T ss_dssp ----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHc-CCCHHHHHHHH
Confidence 345679999999999999885 66788887653 46777 77776665554
No 146
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=78.13 E-value=1.9 Score=41.16 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCchhhHHHHh-hchhHHHHHHh-hccCcCHHHHHHHHHh-CCCCHH--HHhhccCcchhhhccccchh
Q 009742 255 MQDHIQEIVTTGKLSKLEHFEK-DEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLD--DLKNEDSLTHSQRLGLKYFD 329 (527)
Q Consensus 255 ia~kI~Eil~tG~~~~le~l~~-~~~~~~l~lf~-~I~GvGpktA~~ly~~-GirTle--dL~~~~~L~~~q~~Glk~ye 329 (527)
=|..|.++.+-| ..++.+.. .......+.|+ ++||||||||.-+-.. |...+. |.- -..-++++|+-.
T Consensus 96 KA~~I~~~a~~~--~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDth---v~Ri~~RlG~~~-- 168 (214)
T 3fhf_A 96 RAEYIVLARRFK--NIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRH---ILRELYENNYID-- 168 (214)
T ss_dssp HHHHHHHHGGGC--CHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHH---HHHHHHHTTSSS--
T ss_pred HHHHHHHHHHhh--HHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCcccCcHH---HHHHHHHcCCCC--
Confidence 355555555422 12344433 14456888888 9999999999987543 553221 111 122344556532
Q ss_pred hhccCcCHHHHHHHHHHHHHHhhhc
Q 009742 330 DIKTRIPRHEVEQMERLLQKAGEEV 354 (527)
Q Consensus 330 d~~~~i~r~Ea~~i~~iv~~~~~~~ 354 (527)
.....+|.....+++..+...++.+
T Consensus 169 ~~~k~lt~~~y~e~~~~l~~~g~~~ 193 (214)
T 3fhf_A 169 EIPKTLSRRKYLEIENILRDIGEEV 193 (214)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1235677777777777776665543
No 147
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=77.68 E-value=1.2 Score=49.29 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=33.1
Q ss_pred HHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHhhcc
Q 009742 274 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 315 (527)
Q Consensus 274 l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~~~~ 315 (527)
+....+...+.|+ +|||||..+|+++|+.|++|+.||.+..
T Consensus 623 i~~gv~~~~~~L~-qlp~v~~~~ar~l~~~g~~s~~~l~~~~ 663 (702)
T 2p6r_A 623 IKHGVKEELLELV-RIRHIGRVRARKLYNAGIRNAEDIVRHR 663 (702)
T ss_dssp HHHTCCGGGHHHH-TSTTCCHHHHHHHHTTTCCSHHHHHHTH
T ss_pred HHcCCCcchHhhh-cCCCCCHHHHHHHHHcCCCCHHHHHhhh
Confidence 3344455566776 9999999999999999999999998643
No 148
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=77.64 E-value=4.2 Score=33.46 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhcCCCeEEEecccccccCCc-cCCeeEEEecCC
Q 009742 341 EQMERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 384 (527)
Q Consensus 341 ~~i~~iv~~~~~~~~p~~~v~~~GsyRRGke~-~gDVDiLIt~~~ 384 (527)
+.+.+.+..++... +-..+.+-|||-||..+ .+||||+|..++
T Consensus 10 ~~l~~~i~~l~~~~-~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 10 RARREAVLSLCARH-GAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHHHHHHHH-TCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 34566666665443 32368889999999864 589999996544
No 149
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=76.71 E-value=1.2 Score=44.50 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.9
Q ss_pred hccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 288 EVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
.|+|||||||.+|.++ +.|||.|.+.
T Consensus 207 GVpGIG~KTA~kLL~~-~gsle~i~~~ 232 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE-FGNVLDIIDQ 232 (290)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCcCCHhHHHHHHHH-cCCHHHHHHH
Confidence 4899999999999986 3489999854
No 150
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=76.45 E-value=1.4 Score=46.63 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=26.0
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+..|||||++++++|-..||+|+.||.+.
T Consensus 284 v~~l~GiG~~~~~~L~~lGI~T~gdL~~~ 312 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALGIITCTELYQQ 312 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTTCCBHHHHHHT
T ss_pred HHhcCCcCHHHHHHHHHcCCCcHHHHHhh
Confidence 36899999999999988899999999863
No 151
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=76.38 E-value=1.7 Score=41.80 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.1
Q ss_pred HHHHhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 283 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
-..|..|+|||+++|+.|.+. +.|++.|.++
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~A 197 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGSLENIRSA 197 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTS
T ss_pred cccccCCCCcCHHHHHHHHHH-cCCHHHHHhC
Confidence 345679999999999999986 3389988865
No 152
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=75.52 E-value=1.7 Score=41.51 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.6
Q ss_pred HHHHHHhhccCcCHHHHHHHHHh
Q 009742 281 RTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 281 ~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
..++.|+++|||||+||..+--.
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 34666779999999999998754
No 153
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=75.29 E-value=0.94 Score=47.77 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=24.2
Q ss_pred hhccCcCHHHHHH-HHHhCCCCHHHHhhc
Q 009742 287 GEVWGIGPATAQK-LYEKGHRTLDDLKNE 314 (527)
Q Consensus 287 ~~I~GvGpktA~~-ly~~GirTledL~~~ 314 (527)
..|||||++++++ |...||+|+.||.+.
T Consensus 256 ~~l~GiG~~~~~~lL~~lGI~TigdLa~~ 284 (435)
T 4ecq_A 256 RKIRSLGGKLGASVIEILGIEYMGELTQF 284 (435)
T ss_dssp GGSTTCSSHHHHHHHHHHTCCBGGGGGGS
T ss_pred HHhcCCCHHHHHHHHHHcCCCcHHHHhhC
Confidence 5899999999887 567799999999864
No 154
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=75.28 E-value=1.4 Score=45.00 Aligned_cols=25 Identities=28% Similarity=0.613 Sum_probs=22.0
Q ss_pred hccCcCHHHHHHHHHh-CCCCHHHHhhc
Q 009742 288 EVWGIGPATAQKLYEK-GHRTLDDLKNE 314 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~-GirTledL~~~ 314 (527)
+|||||||||.+|.++ | ||+.+.+.
T Consensus 236 gipGiG~KtA~kll~~~g--sle~i~~~ 261 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK--SIEEIVRR 261 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC--SHHHHHHH
T ss_pred CCCCccHHHHHHHHHHcC--CHHHHHHH
Confidence 6999999999999987 6 89998854
No 155
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=75.24 E-value=4 Score=41.33 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=25.9
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhh
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKN 313 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~ 313 (527)
|.++||||+..++++++.|++|++||..
T Consensus 163 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 190 (339)
T 2q0z_X 163 LKQLPHFTSEHIKRCTDKGVESVFDIME 190 (339)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eecCCCCCHHHHHHHHhcCCCCHHHHHh
Confidence 4589999999999999999999999985
No 156
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=74.88 E-value=1.7 Score=41.60 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=17.8
Q ss_pred HHHHHhhccCcCHHHHHHHHH
Q 009742 282 TISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~ 302 (527)
.++.|++++||||+||..+--
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~ 127 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILS 127 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHH
Confidence 566777999999999998864
No 157
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=74.10 E-value=3.5 Score=42.35 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHH---HhCC--chhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh
Q 009742 250 GIGKSMQDHIQEIV---TTGK--LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 250 gIG~~ia~kI~Eil---~tG~--~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
|+|.+ ++.|.++. ..|. --.++.+..-....+++.|++|+||||+||..+--.
T Consensus 215 Gl~~R-A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 215 GLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp TCTTH-HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 55654 44444443 3332 123566654444568899999999999999998654
No 158
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=70.18 E-value=0.91 Score=50.01 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHhhccCcCHHHHHHHHHhC-CCCHHHHhh--ccCcchhhhc------cccchhhhccCcCHHHHHHHHHHHHHH
Q 009742 285 LFGEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRL------GLKYFDDIKTRIPRHEVEQMERLLQKA 350 (527)
Q Consensus 285 lf~~I~GvGpktA~~ly~~G-irTledL~~--~~~L~~~q~~------Glk~yed~~~~i~r~Ea~~i~~iv~~~ 350 (527)
.| +|.|+|++++++|++.| |+++.||.. ...|..+.++ |-|..+.+...|-.+--..+..++-.+
T Consensus 459 am-dI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aL 532 (615)
T 3sgi_A 459 GL-DIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 532 (615)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cc-CccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 44 89999999999999997 799999874 3345555555 467777777766555444455555444
No 159
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=69.64 E-value=2.6 Score=39.83 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.6
Q ss_pred HHHHHHhhccCcCHHHHHHHHHh
Q 009742 281 RTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 281 ~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
.+++.|++++||||+||..+--.
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 35667779999999999998643
No 160
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=69.62 E-value=3.4 Score=48.23 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 301 (527)
..|.-|+|||+..|..|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 765 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 765 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHH------------HTTSSCHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH------------hcCCccHHHHHhcc
Confidence 468899999999999999998 4 68877665543 68999999877664
No 161
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=68.81 E-value=2.7 Score=43.09 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.7
Q ss_pred hhccCcCHHHHHHHHHh-CCCCHHHHhh
Q 009742 287 GEVWGIGPATAQKLYEK-GHRTLDDLKN 313 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~-GirTledL~~ 313 (527)
-.|+|||||||.+|.++ |-.||+.+.+
T Consensus 228 pgv~GiG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred CCCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence 47999999999999998 6678998875
No 162
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=68.68 E-value=6.5 Score=48.45 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.7
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
|.+|||||+.+|+++|+.||+|+.||.+.
T Consensus 1559 L~qip~i~~~~ar~l~~~gi~t~~dl~~~ 1587 (1724)
T 4f92_B 1559 LKQLPHFTSEHIKRCTDKGVESVFDIMEM 1587 (1724)
T ss_dssp GGGSTTCCHHHHHHHHHHTCCSHHHHHSS
T ss_pred EecCCCCCHHHHHHHHHCCCCCHHHHHhC
Confidence 45899999999999999999999999864
No 163
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=67.67 E-value=2.4 Score=40.36 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=19.2
Q ss_pred HHHHHHhhccCcCHHHHHHHHHh
Q 009742 281 RTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 281 ~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
.+++.|+++|||||+||..+--.
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCY 140 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHH
Confidence 35677779999999999998764
No 164
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=67.23 E-value=2.7 Score=42.59 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.3
Q ss_pred hhccCcCHHHHHHHHHh-CCCCHHHHhhc
Q 009742 287 GEVWGIGPATAQKLYEK-GHRTLDDLKNE 314 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~-GirTledL~~~ 314 (527)
-.|+|||||||.+|.++ | |++.+.+.
T Consensus 238 pGv~GiG~KtA~kLl~~~g--sle~i~~~ 264 (336)
T 1rxw_A 238 EGVKGVGVKKALNYIKTYG--DIFRALKA 264 (336)
T ss_dssp CCCTTCCHHHHHHHHHHHS--SHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHcC--CHHHHHHh
Confidence 36999999999999987 5 79998854
No 165
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=66.55 E-value=3 Score=42.07 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=22.5
Q ss_pred hccCcCHHHHHHHHHhCCCCHHHHh-hc
Q 009742 288 EVWGIGPATAQKLYEKGHRTLDDLK-NE 314 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~GirTledL~-~~ 314 (527)
.|||||||||.+|.++ .|++.+. +.
T Consensus 229 GvpGiG~ktA~kli~~--gsle~i~~~~ 254 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS--GVAKDVLKKE 254 (326)
T ss_dssp TTTTCCHHHHHHHHHH--TCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc--CCHHHHHHHH
Confidence 7999999999999998 8999987 53
No 166
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=66.48 E-value=12 Score=37.34 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.5
Q ss_pred HHHHhh-ccCcCHHHHHHHHHh
Q 009742 283 ISLFGE-VWGIGPATAQKLYEK 303 (527)
Q Consensus 283 l~lf~~-I~GvGpktA~~ly~~ 303 (527)
++.|++ ++|||++||..+--.
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 455556 999999999988643
No 167
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=66.27 E-value=4.7 Score=33.12 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.3
Q ss_pred HHhhccCcCHHHHHHHHHhCCCCHHHHhh
Q 009742 285 LFGEVWGIGPATAQKLYEKGHRTLDDLKN 313 (527)
Q Consensus 285 lf~~I~GvGpktA~~ly~~GirTledL~~ 313 (527)
-.+.||||||..+++|-++||..--.|..
T Consensus 19 ~V~evpGIG~~~~~~L~~~Gf~kAy~lLG 47 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERGFDKAYVVLG 47 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred CcccCCCcCHHHHHHHHHcCccHHHHHHH
Confidence 34789999999999999999999777763
No 168
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=66.23 E-value=2.6 Score=34.99 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=26.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 282 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~ 282 (527)
|+.+|..||+||+.+.+...++ -+.-+++|+.--+..+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~Ga~~a 39 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEA 39 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHCHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHH
Confidence 5788999999999988865544 4556666665444443
No 169
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=65.72 E-value=4.2 Score=38.91 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHHHHhhccCcCHHHHHHHHH
Q 009742 282 TISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~ 302 (527)
.++.|+++|||||+||..+--
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~ 131 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVS 131 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHHHH
Confidence 567778999999999998864
No 170
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=64.86 E-value=8.7 Score=36.55 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcC
Q 009742 221 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 293 (527)
Q Consensus 221 r~~aY~rAa~~l~-~l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 293 (527)
|+..-..+|..|. .+...+. ..++|..|||||+.+|+.|.-+.- |.-. +- ....+.+.+.++.|+.
T Consensus 85 kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~-~~~~----~~--vD~~v~Rv~~rl~~~~ 152 (225)
T 1kg2_A 85 RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSL-GKHF----PI--LDGNVKRVLARCYAVS 152 (225)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHH-CCSC----CC--CCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHhC-CCCc----ce--eCHHHHHHHHHHcCCC
Confidence 6666666666654 3333333 468899999999999999976643 3321 11 2344666666666654
No 171
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=64.33 E-value=4.8 Score=47.72 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 301 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 301 (527)
..|.-|+|||+..|..|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 714 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 762 (1219)
T 3psi_A 714 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 762 (1219)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH------------HTTCSCHHHHHHHG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh------------hCCCccHHHHHhcc
Confidence 457889999999999999998 4 68877665543 68899998866654
No 172
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=62.23 E-value=12 Score=39.90 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=39.2
Q ss_pred HHHHHHHhhhcCCCeEEEecccc-cccCC-ccCCeeEEEecCCcch--hhh--hHHHHHHHHHHc
Q 009742 344 ERLLQKAGEEVLPEVIILCGGSY-RRGKA-SCGDLDVVIMHPDRKS--HKG--FLSKYVKKLKEM 402 (527)
Q Consensus 344 ~~iv~~~~~~~~p~~~v~~~Gsy-RRGke-~~gDVDiLIt~~~~~~--~~~--~l~~lv~~L~~~ 402 (527)
.+-++.+++.+.|++.|.+.||| +-|.- -++|||+++..++... ... .+.++.+.|+..
T Consensus 45 ~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 109 (468)
T 2b4v_A 45 QQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRY 109 (468)
T ss_dssp HHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHh
Confidence 33345555557899999999999 66774 5899999998764321 111 123456667766
No 173
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=61.71 E-value=3.9 Score=38.94 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=23.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 274 (527)
+++..|||||++.|.++.=.|-.-.-..++.|
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~L 57 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFIINMPLDEVRSL 57 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67899999999999999876654443444443
No 174
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.67 E-value=4.7 Score=40.96 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=26.7
Q ss_pred HHhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 285 LFGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 285 lf~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
.+..++||||.++++|-+.||.|++++...
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~ 65 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVA 65 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTC
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 356789999999999999999999999854
No 175
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=61.56 E-value=1.7 Score=44.28 Aligned_cols=50 Identities=22% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHhhccCcCHHHHHHHHHh----CCCCHHHHhhcc---C-cchhhhccccchhhhc
Q 009742 283 ISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNED---S-LTHSQRLGLKYFDDIK 332 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~~----GirTledL~~~~---~-L~~~q~~Glk~yed~~ 332 (527)
+..+++|||||+++|+++.+- -+..+++|+..- . |+...++|.+....|-
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 334679999999999999763 467788875332 1 3466677776666553
No 176
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=61.51 E-value=7.9 Score=36.78 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIV 263 (527)
Q Consensus 221 r~~aY~rAa~~l~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil 263 (527)
|+..-..+|..+.. +...+ ...++|..|||||+.+|+.|.-+.
T Consensus 91 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 91 RAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHh
Confidence 55555666655543 23333 346889999999999999987553
No 177
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=61.39 E-value=4.2 Score=42.03 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.6
Q ss_pred HHHHhh------ccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 283 ISLFGE------VWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 283 l~lf~~------I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+.+|+. |||||||||.+|.++ +.|++.+.+.
T Consensus 225 ~~~L~G~D~~d~IpGIG~KtA~kLl~~-~gsle~i~~~ 261 (379)
T 1ul1_X 225 LCILLGSDYCESIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (379)
T ss_dssp HHHHHHCSSSCCCTTCCHHHHHHHHHH-SSSHHHHHTT
T ss_pred HHHHhCCCcCCCCCCcCHHHHHHHHHH-cCCHHHHHHH
Confidence 445556 999999999999987 2489998854
No 178
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=60.56 E-value=2.9 Score=42.56 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=17.2
Q ss_pred hccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 288 EVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
.|+|||||||.+|.++- .|++.+.+.
T Consensus 238 Gv~GIG~KtA~kLi~~~-gsle~i~~~ 263 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY-GKIEKAMEY 263 (346)
T ss_dssp CSTTCCHHHHHHHHHHS-SCC------
T ss_pred CCCCcCHHHHHHHHHHc-CCHHHHHHH
Confidence 79999999999999872 367777643
No 179
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=60.42 E-value=3.1 Score=42.29 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHHHhhccCcCHHHHHHHHHh----CCCCHHHHhhcc------Ccchhhhccccchhhh
Q 009742 283 ISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~~----GirTledL~~~~------~L~~~q~~Glk~yed~ 331 (527)
+..+++|||||+++|+++.+- -+..+++|+++. .|....++|.+....|
T Consensus 56 ~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l 114 (335)
T 2fmp_A 56 GAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKF 114 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHH
Confidence 334679999999999999763 457778887542 2566677776665554
No 180
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=60.17 E-value=2.7 Score=43.34 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.9
Q ss_pred hccCcCHHHHHHHHHh-CCCCHHHHhh
Q 009742 288 EVWGIGPATAQKLYEK-GHRTLDDLKN 313 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~-GirTledL~~ 313 (527)
.|+|||||||.+|.++ | ||+.+.+
T Consensus 255 GVpGIG~KtA~kLl~~~g--sle~il~ 279 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG--GIEKIPK 279 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT--SSTTSCG
T ss_pred CCCCcCHHHHHHHHHHcC--CHHHHHH
Confidence 7889999999999986 5 6666654
No 181
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=59.81 E-value=2.6 Score=43.36 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=34.7
Q ss_pred HhhccCcCHHHHHHHHHh----CCCCHHHHhhcc------Ccchhhhccccchhhhc
Q 009742 286 FGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDIK 332 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~----GirTledL~~~~------~L~~~q~~Glk~yed~~ 332 (527)
+++|||||+++|+++.+- -+..+++|+++. .|....++|.+....|-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHH
Confidence 679999999999999762 567888887532 36667777776666553
No 182
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=59.60 E-value=10 Score=29.97 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTT 265 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~t 265 (527)
+++..++|+|++..+.|.+.|+.
T Consensus 41 ~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 41 EDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999863
No 183
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=59.08 E-value=3.3 Score=37.77 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.2
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVT 264 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~ 264 (527)
+.++|.+|||||+.+|+.|.=|.-
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~~ 125 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFCV 125 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHTS
T ss_pred ChhhhhcCCCchHHHHHHHHHHHC
Confidence 468899999999999999876543
No 184
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=58.64 E-value=12 Score=37.96 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=37.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|||||+.+++++..+ -+.-+.+|.+-.+....+.| |+.+..++|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKL----GINKLVDTLSIEFDKLKGMI------GEAKAKYLISLARDEYN 234 (352)
T ss_dssp GGGSTTCCHHHHHHHHTT----TCCBGGGGGSSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred CCcccccCHHHHHHHHHc----CCchHHHHHCCCHHHHHHhc------ChhHHHHHHHHhCCCCC
Confidence 677899999888876543 45666677665555556666 77778888874 8864
No 185
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=58.51 E-value=5.5 Score=34.26 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=20.7
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCC
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHR 306 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-Gir 306 (527)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid 39 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIA 39 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCC
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcC
Confidence 4556789999999999999876 764
No 186
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=57.93 E-value=11 Score=36.35 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=33.1
Q ss_pred cCHHHHHH-HHHHHHHHhhhcCCCe-EEEecccccccCCc-cCCeeEEEecCC
Q 009742 335 IPRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 384 (527)
Q Consensus 335 i~r~Ea~~-i~~iv~~~~~~~~p~~-~v~~~GsyRRGke~-~gDVDiLIt~~~ 384 (527)
|.+.++.. +.+++..+....-..+ .+.+-|||-||..+ -.||||+|...+
T Consensus 7 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 7 MTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 55666544 4555555543322235 68899999999875 489999996544
No 187
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=57.42 E-value=10 Score=37.40 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.0
Q ss_pred hHHHHHHhhccCcCHHHHHHHHHh
Q 009742 280 VRTISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 280 ~~~l~lf~~I~GvGpktA~~ly~~ 303 (527)
..+++.|++|+||||+||..+--.
T Consensus 203 ~~~~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 203 EQAMKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHH
Confidence 457888889999999999988643
No 188
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=56.95 E-value=8.5 Score=38.30 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcC-CCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcC
Q 009742 221 RSFSYYKAIPVIE-KLPFKI-ESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 293 (527)
Q Consensus 221 r~~aY~rAa~~l~-~l~~~i-~s~~~l~~-lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 293 (527)
|+..-.++|..|. .+...+ .+.++|.. |||||..+|+.|.-+. -|.-. +- ....+.+++.++.+++
T Consensus 104 KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a-~g~p~----~~--VDt~V~Rv~~Rlg~i~ 172 (287)
T 3n5n_X 104 RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIA-FGQAT----GV--VDGNVARVLCRVRAIG 172 (287)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHH-SCCCC----CC--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHh-cCCCC----cc--ccHHHHHHHHHhCCCC
Confidence 5655666666554 333333 24688988 9999999999997544 33311 11 2334666666666555
No 189
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=56.49 E-value=9.4 Score=39.01 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcC
Q 009742 221 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 293 (527)
Q Consensus 221 r~~aY~rAa~~l~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 293 (527)
|++.-.++|..|.. +...+ ...++|..|||||+.+|+.|.-+.- |.-. +- ....+.+.+.++.++.
T Consensus 94 ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~-~~~~----~~--vD~~v~Rv~~rl~~~~ 161 (369)
T 3fsp_A 94 RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAY-GVPE----PA--VDGNVMRVLSRLFLVT 161 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHH-CCCC----CC--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHC-CCCc----cc--ccHHHHHHHHHHcCcc
Confidence 66666666666543 22222 3568999999999999999987753 3311 11 1234666676666654
No 190
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=56.17 E-value=4.2 Score=47.40 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=27.1
Q ss_pred HHHHHhhccCcCHHHHHHHH--H-h---CCCCHHHHhhc
Q 009742 282 TISLFGEVWGIGPATAQKLY--E-K---GHRTLDDLKNE 314 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly--~-~---GirTledL~~~ 314 (527)
...+|..|+||||++|+.+. . . .+.|.+||.+-
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v 753 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH 753 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHT
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhc
Confidence 56788899999999999994 3 2 67999999863
No 191
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=55.75 E-value=5.8 Score=44.96 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.1
Q ss_pred HHHHhhccCcCHHHHHHHHH---h--CCCCHHHHhh
Q 009742 283 ISLFGEVWGIGPATAQKLYE---K--GHRTLDDLKN 313 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~---~--GirTledL~~ 313 (527)
..+|..|+||||++|+.+.+ . +|+|.+||.+
T Consensus 507 ~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~ 542 (785)
T 3bzc_A 507 AALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK 542 (785)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHh
Confidence 46788999999999999853 2 7899999985
No 192
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=54.81 E-value=5.4 Score=40.42 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.5
Q ss_pred hccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 288 EVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
.|||||||||.+|.++. .|++.+.+.
T Consensus 241 gv~GiG~ktA~kli~~~-gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHS-KDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHTC-SSGGGGTGG
T ss_pred CCCCccHHHHHHHHHHc-CCHHHHHcC
Confidence 79999999999999972 478877653
No 193
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=54.11 E-value=14 Score=35.27 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIE-KLPFKI-ESADQVKGLPGIGKSMQDHIQEIV 263 (527)
Q Consensus 221 r~~aY~rAa~~l~-~l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil 263 (527)
|+..-..+|..|. .+...+ ...++|..|||||+.+|+.|.-+.
T Consensus 89 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 89 KARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 5555556665554 343344 346889999999999999988654
No 194
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=53.22 E-value=7.4 Score=34.94 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.1
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCC
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHR 306 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-Gir 306 (527)
+.--||.|+|||+++|..+.+. ||.
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid 53 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVD 53 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCC
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCC
Confidence 3345689999999999999875 764
No 195
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=53.02 E-value=9.9 Score=39.81 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=36.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHhCCCCHHHHh
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 312 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirTledL~ 312 (527)
+..|||||+..|+.+-|- -|+++.+-. - ....| ..-|||.|.|+++ .|++||+...
T Consensus 470 LtAIaGIGp~tAeRLLEk--FGSVe~Vm~---A----teDEL-RedGIGekqarrI--~gl~~l~~~~ 525 (685)
T 4gfj_A 470 LISIRGIDRERAERLLKK--YGGYSKVRE---A----GVEEL-REDGLTDAQIREL--KGLKTLESIV 525 (685)
T ss_dssp HHTSTTCCHHHHHHHHHH--HTSHHHHHH---S----CHHHH-HHTTCCHHHHHHH--HTCHHHHHHS
T ss_pred eeccCCCCHHHHHHHHHH--hcCHHHHHh---C----CHHHH-HHccccHHHHHHH--hhHHHHHHHh
Confidence 567888888888776553 355554433 1 12233 4599999999988 4777776544
No 196
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=52.78 E-value=15 Score=38.68 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=24.8
Q ss_pred eEEEecccccccCCcc--CCeeEEEecCCcch
Q 009742 358 VIILCGGSYRRGKASC--GDLDVVIMHPDRKS 387 (527)
Q Consensus 358 ~~v~~~GsyRRGke~~--gDVDiLIt~~~~~~ 387 (527)
+.+.++|||+||--.- +||||.|.-|...+
T Consensus 40 ~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~ 71 (437)
T 1r89_A 40 VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS 71 (437)
T ss_dssp CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC
T ss_pred CeEEEeccccCCCcCCCCCCceEEEEcCCCCC
Confidence 6888999999999887 58999998776544
No 197
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=52.43 E-value=16 Score=35.72 Aligned_cols=47 Identities=30% Similarity=0.506 Sum_probs=32.4
Q ss_pred HHHHH-HHHHHHHHHhhhcCCCe-EEEecccccccCCc-cCCeeEEEecCC
Q 009742 337 RHEVE-QMERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 384 (527)
Q Consensus 337 r~Ea~-~i~~iv~~~~~~~~p~~-~v~~~GsyRRGke~-~gDVDiLIt~~~ 384 (527)
++++. ++.++++.+... .+++ .+.+-|||-||... -+||||+|...+
T Consensus 19 ~q~Vq~eL~~ive~L~~~-~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 19 FQGVQHTIARWVDRLREE-YADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHHh-cCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 44443 356666665543 4455 68899999999865 589999997544
No 198
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=52.22 E-value=12 Score=35.05 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIE-KLPFKI-ESADQVKGLPGIGKSMQDHIQEIV 263 (527)
Q Consensus 221 r~~aY~rAa~~l~-~l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil 263 (527)
|+..-..+|..+. .+...+ ...++|..|||||+.+|+.|.=+.
T Consensus 85 KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 85 KAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 5666666666654 333333 346889999999999999987654
No 199
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=52.03 E-value=4.4 Score=45.93 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.6
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHh
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLK 312 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~ 312 (527)
++.++|||||+|+.|-+.||.|+.||.
T Consensus 117 ~~~l~gvg~~~~~~l~~lgi~~~~dll 143 (780)
T 1gm5_A 117 IQYAKGVGPNRKKKLKKLGIETLRDLL 143 (780)
T ss_dssp SSSSSSCCHHHHHHHHTTTCCSSGGGT
T ss_pred chhcCCCCHHHHHHHHHCCCCcHHHHH
Confidence 357899999999999888999999997
No 200
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=51.83 E-value=4.6 Score=43.59 Aligned_cols=27 Identities=11% Similarity=0.452 Sum_probs=23.1
Q ss_pred hhccCcCHHHHHHHHHh-CC---CCHHHHhh
Q 009742 287 GEVWGIGPATAQKLYEK-GH---RTLDDLKN 313 (527)
Q Consensus 287 ~~I~GvGpktA~~ly~~-Gi---rTledL~~ 313 (527)
..|||||++++++|.+. || +|+.+|..
T Consensus 310 ~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~ 340 (520)
T 3mfi_A 310 TSFWTLGGVLGKELIDVLDLPHENSIKHIRE 340 (520)
T ss_dssp GGSTTCSSHHHHHHHHHTTCCSSSHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHhcCCCcccchhhhhh
Confidence 47999999999999999 99 88766553
No 201
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=51.43 E-value=5.7 Score=34.11 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=35.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh-------CCCCHHHHh
Q 009742 241 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLK 312 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-------GirTledL~ 312 (527)
.+++|.++ |||+..++|+.+ .|. .-++.+..- .-+-|..|+|||+.+|.+|.+. |+.|-.|+.
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~e---AG~-~Tve~va~a----~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~ 93 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEE---AGF-HTVEAVAYA----PKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFH 93 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHT---TCC-SSGGGBTSS----BHHHHHTTTTCSTTHHHHHHHHHHHHSCCC--------
T ss_pred cHHHHHhc-CCCHHHHHHHHH---cCc-CcHHHHHhC----CHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHH
Confidence 45555555 999988887654 444 334444322 2344569999999999999741 566666655
No 202
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=51.32 E-value=6.8 Score=37.65 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=24.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 274 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 274 (527)
+++..|||||++.|.++.-.|-.-.-..++.|
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~L 43 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHLFEQPREDIERL 43 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 77999999999999999877755444444444
No 203
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=51.07 E-value=6.4 Score=37.04 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHH
Q 009742 241 SADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 241 s~~~l~~lpgIG~~ia~kI~Ei 262 (527)
..++|.+|||||+.+|+.|--+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 4578999999999999998643
No 204
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=50.79 E-value=20 Score=36.19 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=39.1
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|||||+.+++++..+ -+..+.+|.+-.+....+.| |+++...+|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAM----GITTVADLAVTDPSVLTTAF------GPSTGLWLLLLAKGGGD 234 (356)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCSHHHHHTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCchhHHHHHHHc----CCCeecccccCCHHHHHHHh------CChHHHHHHHHHcCCCc
Confidence 578999999999987654 35566677665555566667 78888888874 8753
No 205
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=50.32 E-value=17 Score=29.56 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=21.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTT 265 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~t 265 (527)
+++..++|+|++..+.|.+.|+.
T Consensus 44 ~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 44 VELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHT
T ss_pred HHHhhccccCcccHHHHHHHHHH
Confidence 68999999999999999999864
No 206
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=49.69 E-value=61 Score=32.02 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhhcCCCeE-EEecccccccCCc-cCCeeEEEecCCcchhhhhHHHHHHHHHHcCcccceeeeccccC
Q 009742 339 EVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 416 (527)
Q Consensus 339 Ea~~i~~iv~~~~~~~~p~~~-v~~~GsyRRGke~-~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g~l~~~l~~s~~~~ 416 (527)
+-+-+..|++.+.. .+.+. |.+.||+-||... =.|+||+|...+... ..+. . -..|..-|-+.-...
T Consensus 24 ~~e~l~~I~~~~~~--d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~-~~f~-~-~~Wl~~fG~~~~~f~------ 92 (287)
T 3jz0_A 24 QKELIANVKNLTES--DERITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT-SNFD-S-SNWLFDVAPYLMLYK------ 92 (287)
T ss_dssp HHHHHHHHHHHHHH--CTTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT-TTCC-H-HHHHHHHCCEEEEEE------
T ss_pred HHHHHHHHHHHHhc--CCCEEEEEEECCccCCCCCCccceeEEEEEcCcch-hhhh-h-HHHHHHhhhhheEee------
Confidence 33444555544432 67885 6789999988543 379999997655221 1111 1 134444453321111
Q ss_pred CCCCCcceeeeeeeecCCCccceeeeEEEecCchhHHHHHHhccc
Q 009742 417 EGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGN 461 (527)
Q Consensus 417 ~~~~~~~~~~~g~~~~~~~~~~~RVDl~v~p~~~f~~aLl~~TGS 461 (527)
.. .+ .. ++-+.. .+||||.++|.++. ..+..|-|+
T Consensus 93 -~~-~~--~~--l~lF~D---g~riDl~l~~~~~l-~~~~~~~~~ 127 (287)
T 3jz0_A 93 -NE-YG--TE--VVIFDN---LIRGEFHFLSEKDM-NIIPSFKDS 127 (287)
T ss_dssp -CT-TS--CE--EEEETT---SCEEEEEEEEGGGG-GGGGGGGGG
T ss_pred -cc-cc--eE--EEEecC---CcEEEEEEeeHHHH-HHHhccccc
Confidence 00 01 00 233332 35999999999976 334445554
No 207
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=49.29 E-value=6.2 Score=46.84 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=26.9
Q ss_pred HHHHHhhccCcCHHHHHHHH--H-h---CCCCHHHHhhc
Q 009742 282 TISLFGEVWGIGPATAQKLY--E-K---GHRTLDDLKNE 314 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly--~-~---GirTledL~~~ 314 (527)
...+|..|+||||++|+.+. . . .+.|.+||.+-
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v 750 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH 750 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhC
Confidence 56788899999999999994 3 2 67999999863
No 208
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.11 E-value=8.9 Score=34.62 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=20.7
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCC
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHR 306 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-Gir 306 (527)
+.--||.|+|||+++|..+.+. ||.
T Consensus 26 v~~ALt~I~GIG~~~A~~I~~~~gid 51 (152)
T 3iz6_M 26 IMFALTSIKGVGRRFSNIVCKKADID 51 (152)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCC
T ss_pred eHhhhhhccCcCHHHHHHHHHHcCCC
Confidence 5556789999999999999875 764
No 209
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.81 E-value=9.2 Score=34.40 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=20.5
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCC
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHR 306 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-Gir 306 (527)
+.--||.|+|||+++|..+.+. ||.
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~~gid 46 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRVAGLD 46 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTCC
T ss_pred ehhhhhhccCcCHHHHHHHHHHhCCC
Confidence 4555689999999999999875 764
No 210
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=48.24 E-value=5.3 Score=41.38 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=33.4
Q ss_pred HhhccCcCHHHHHHHHHh----CCCCHHHHhhcc------Ccchhhhccccchhhh
Q 009742 286 FGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDI 331 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~----GirTledL~~~~------~L~~~q~~Glk~yed~ 331 (527)
+++|||||+++|+++.+- -+..+++|+++. .|....++|.+....|
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 679999999999999862 457888888632 3566677776655544
No 211
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=48.06 E-value=12 Score=27.98 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCccCCCCCcc
Q 009742 465 NRRLRLLAESKGYRLDDTGLFP 486 (527)
Q Consensus 465 nr~LR~~A~~kg~~L~~~GL~~ 486 (527)
++.+|.||++.||..++.|-..
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp 36 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIP 36 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCC
T ss_pred hHHHHHHHHHcCCcCCCCCCCC
Confidence 7899999999999999998664
No 212
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=47.89 E-value=47 Score=32.86 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhcCCCeE-EEecccccccC---CccCCeeEEEecCCcc
Q 009742 343 MERLLQKAGEEVLPEVI-ILCGGSYRRGK---ASCGDLDVVIMHPDRK 386 (527)
Q Consensus 343 i~~iv~~~~~~~~p~~~-v~~~GsyRRGk---e~~gDVDiLIt~~~~~ 386 (527)
+..|+.-+. ..+.+. |.+.||+-++. -.=.|+||++...+..
T Consensus 10 ~~~i~~~a~--~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~~ 55 (294)
T 2pbe_A 10 MDIFLDFAL--NDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVE 55 (294)
T ss_dssp HHHHHHHHH--HCTTEEEEEEC------------CCCEEEEEEESCHH
T ss_pred HHHHHHHHc--CCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcCch
Confidence 344444333 367785 67899976644 6678999999877653
No 213
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=47.35 E-value=19 Score=37.52 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=37.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|||||+++++++..+ | +.-+.+|.+-.+....+.| |.+.+..||+. |+..
T Consensus 236 v~~l~GIG~~t~~~L~~l---G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 290 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEAL---G-INSVRDLQTFSPKILEKEL------GISVAQRIQKLSFGEDN 290 (420)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCSHHHHHHSCHHHHHHHH------HHHHHHHHHHHHTTCCC
T ss_pred HHHccCCCHHHHHHHHHh---C-CCcHHHHhhCCHHHHHHHh------CchHHHHHHHHhcCCCc
Confidence 678999999999998764 3 4556666654444455556 67788999974 8864
No 214
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=46.95 E-value=17 Score=33.54 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=54.4
Q ss_pred cCCeEEEEeeCCCChh-HHHHHHHHHHhcCCEEEee-cCCCccEEEEeC------cHHHHHh----c-cccchHHHHHHh
Q 009742 19 FAGMRVFLVEKGVQNR-RLQIWRQKLVQMGATVEEK-LSKKVTHVLAMD------LEALLQQ----S-VIRYQWLEDSLR 85 (527)
Q Consensus 19 f~~~~i~iv~~~~g~~-r~~~l~~~~~~~G~~v~~~-~s~~VTHVV~~~------~~~~l~~----~-vv~~~Wl~ec~~ 85 (527)
++|+++.+-|-..=+. .--...|-+-..|++-... +.-+.||.|+.| ++..+|. . +|+++|+-.|--
T Consensus 162 msgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvracev 241 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEV 241 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHHH
T ss_pred ccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHhh
Confidence 5677777643221111 1223455566678775533 345899999865 2334442 2 999999999999
Q ss_pred cCCCcCCcccccccC
Q 009742 86 LGEKVSEDLYRIKLD 100 (527)
Q Consensus 86 ~g~~v~~~~~~l~~~ 100 (527)
+++.|-..+|-|.-+
T Consensus 242 ekrivgvrgfyldad 256 (290)
T 4gns_A 242 EKRIVGVRGFYLDAD 256 (290)
T ss_dssp TTSCCCSGGGBTTSC
T ss_pred hheeeeeeeEEEccc
Confidence 999999999988644
No 215
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=46.65 E-value=19 Score=28.89 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTT 265 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~t 265 (527)
+++..++|+|++..+.|.+.|+.
T Consensus 48 ~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 48 EDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHhHHHHHHHHHHH
Confidence 68999999999999999998853
No 216
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=45.88 E-value=11 Score=34.21 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.1
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCCCHHHHhhccCcchhhhccccchhhhccCcCHHHHHHHHHHHHH
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 349 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-GirTledL~~~~~L~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~ 349 (527)
+.--|+.|+|||..+|..+.+. ||..- .++ .-++-+|++.|..+|..
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid~~------------~r~---------~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKIDPN------------ARA---------GLLTEDQCNKITDLIAD 75 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCSS------------SCS---------SCSCHHHHHHHHHHHHS
T ss_pred EEEeeecccccCHHHHHHHHHHcCCCcc------------ccc---------ccCCHHHHHHHHHHHhC
Confidence 4556789999999999999875 76420 011 22445677778777765
No 217
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=45.66 E-value=21 Score=36.52 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHcCCChhHHHHHHHHHHHhc-CCcc--------c---cchhhhcCCCCCCHHHHHHHHHH
Q 009742 214 RALGEDRRSFSYYKAIPVIEK-LPFK--------I---ESADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 214 e~~g~~~r~~aY~rAa~~l~~-l~~~--------i---~s~~~l~~lpgIG~~ia~kI~Ei 262 (527)
.-.|-..|+..-..+|..+.. .... + +..++|..|||||+.+|+.|.=+
T Consensus 212 r~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 212 RKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 334544576666666666543 1111 1 23478999999999999998754
No 218
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=45.33 E-value=6.8 Score=40.51 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=11.9
Q ss_pred HHHHhhccCcCHHHHHHHHH
Q 009742 283 ISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~ 302 (527)
.+.|..|.|||+++|+.+++
T Consensus 346 ~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 346 VEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHhccCccHHHHHHHHH
Confidence 33445666666666666654
No 219
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=43.85 E-value=18 Score=34.29 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhc-CCc----cc-cchhhhcCCCCCCHHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIEK-LPF----KI-ESADQVKGLPGIGKSMQDHIQEIV 263 (527)
Q Consensus 221 r~~aY~rAa~~l~~-l~~----~i-~s~~~l~~lpgIG~~ia~kI~Eil 263 (527)
|+..-..+|..|.. ... ++ ...++|..|||||+.+|+.|.-+.
T Consensus 93 KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 93 KAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 55555556655532 211 11 245789999999999999997654
No 220
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=43.42 E-value=29 Score=35.89 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.0
Q ss_pred HhhhcCCCeEEEecccccccCCc-cCCeeEEEecCCc
Q 009742 350 AGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDR 385 (527)
Q Consensus 350 ~~~~~~p~~~v~~~GsyRRGke~-~gDVDiLIt~~~~ 385 (527)
+.....|++.|.+-||+.-|.-+ .+|||+.|..++.
T Consensus 38 ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~ 74 (384)
T 3hj4_A 38 IGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNF 74 (384)
T ss_dssp HHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTC
T ss_pred HHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCC
Confidence 33346899999999999999765 5799999987653
No 221
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=43.39 E-value=7 Score=34.22 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=20.2
Q ss_pred HHHHHhhccCcCHHHHHHHHHh-CCC
Q 009742 282 TISLFGEVWGIGPATAQKLYEK-GHR 306 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~-Gir 306 (527)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~ 40 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGIN 40 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCC
T ss_pred eeeehhccccccHHHHHHHHHHcCCC
Confidence 4445689999999999999765 664
No 222
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=43.37 E-value=13 Score=35.52 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcC--Ccc-c------cchhhhcCCCCCCHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIEKL--PFK-I------ESADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 221 r~~aY~rAa~~l~~l--~~~-i------~s~~~l~~lpgIG~~ia~kI~Ei 262 (527)
|+..-..+|..+..= ... + +..++|..|||||+.+|+.|.=+
T Consensus 107 KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 107 KIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 455555666565431 211 2 23467999999999999998754
No 223
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=43.30 E-value=6.6 Score=31.04 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=31.6
Q ss_pred cCcCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhc
Q 009742 290 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 332 (527)
Q Consensus 290 ~GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~yed~~ 332 (527)
-++.++...-|-+.||.|+.||.+. ..|-+..+||-+..+++.
T Consensus 14 L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 14 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHH
T ss_pred hCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHH
Confidence 3667777777888899999999853 347777788877655544
No 224
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=43.09 E-value=28 Score=37.33 Aligned_cols=53 Identities=28% Similarity=0.502 Sum_probs=39.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|||||+.+++++..+ -+.-+.+|.+-.+..+.+.| |+++...||+. |+..
T Consensus 317 V~~l~GIG~~t~~kL~~l----GI~TigDLa~~~~~~L~~~f------G~~~g~~L~~~a~GiD~ 371 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASL----GIKTCGDLQYMTMAKLQKEF------GPKTGQMLYRFCRGLDD 371 (504)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCBHHHHTTSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred hhHhhCcCHHHHHHHHHc----CCCcHHHHHhccHHHHHHhh------ChhHHHHHHHHhcCCCc
Confidence 678999999999988765 35666777665555555666 78889999973 8853
No 225
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=43.08 E-value=19 Score=34.54 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhc--CC--ccc------cchhhhcCCCCCCHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIEK--LP--FKI------ESADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 221 r~~aY~rAa~~l~~--l~--~~i------~s~~~l~~lpgIG~~ia~kI~Ei 262 (527)
|+..-..+|..+.. +| ..+ +..++|..|||||+.+|+.|.=+
T Consensus 118 Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 118 KSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 35555566666654 22 011 23468999999999999998744
No 226
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=43.01 E-value=25 Score=34.72 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 009742 217 GEDRRSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 217 g~~~r~~aY~rAa~~l~~l~~~i~---------s~~~l~~lpgIG~~ia~kI~Ei 262 (527)
|-.+|+..-..+|..+..-...+. ..++|..|||||+.+|+.|.=+
T Consensus 176 g~g~Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 176 TAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp TCGGGHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 444577777777777764322211 2367999999999999999844
No 227
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=42.93 E-value=25 Score=35.42 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=14.5
Q ss_pred EEEecccccccCCccC--CeeEEEecCC
Q 009742 359 IILCGGSYRRGKASCG--DLDVVIMHPD 384 (527)
Q Consensus 359 ~v~~~GsyRRGke~~g--DVDiLIt~~~ 384 (527)
.+..+|||.||-..-| |||++|--+.
T Consensus 56 ~v~~~GSyargT~lrg~sDiDlvV~l~~ 83 (349)
T 1px5_A 56 KVVKGGSSGKGTTLRGRSDADLVVFLTK 83 (349)
T ss_dssp EEEEEEEC--------CEEEEEEEEEES
T ss_pred EEEEecCcCCCcccCCCCceeEEEEECC
Confidence 5778999999998865 9999995543
No 228
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=42.31 E-value=45 Score=30.24 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=27.4
Q ss_pred CCeEEEecccc----cccCCccCCeeEEEecCCcchhhhhHHHHHHHHHHcCcc
Q 009742 356 PEVIILCGGSY----RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 405 (527)
Q Consensus 356 p~~~v~~~Gsy----RRGke~~gDVDiLIt~~~~~~~~~~l~~lv~~L~~~g~l 405 (527)
-++...++||| +=.-...+||||+|.. +. ..++.+.|...|.-
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~---~d----a~~~~~~L~~~g~~ 78 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTDE---EG----AYEIERIFSEFVSX 78 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEECH---HH----HHHHHHHTGGGEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEecc---cC----HHHHHHHHHHHhhc
Confidence 46677888984 4456689999999932 21 22345556665543
No 229
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=42.13 E-value=25 Score=34.48 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=33.5
Q ss_pred cCC-ChhHHHHHHHHHHHhc--CCccc-cc----hhhhcCCCCCCHHHHHHHHHHH
Q 009742 216 LGE-DRRSFSYYKAIPVIEK--LPFKI-ES----ADQVKGLPGIGKSMQDHIQEIV 263 (527)
Q Consensus 216 ~g~-~~r~~aY~rAa~~l~~--l~~~i-~s----~~~l~~lpgIG~~ia~kI~Eil 263 (527)
.|- +.|+..-.++|..+.. ++... .+ .++|..|||||+.+|+.|.=+.
T Consensus 172 ~G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 172 LGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRG 227 (282)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHh
Confidence 454 3577777788877764 43322 22 4789999999999999987543
No 230
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=41.90 E-value=14 Score=28.93 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCCHHHHh
Q 009742 294 PATAQKLYEKGHRTLDDLK 312 (527)
Q Consensus 294 pktA~~ly~~GirTledL~ 312 (527)
-+.+..|.+.||+|++|++
T Consensus 59 ~~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 59 QAILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 4568899999999999985
No 231
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=41.71 E-value=24 Score=35.57 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=37.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|||||+.+++++..+ -+..+.+|.+-.+....+.| |+.+...+|+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNEL----GIQKLRDILSKNYNELEKIT------GKAKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCHHHHHHHTTT----TCCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred cccccCcCHHHHHHHHHc----CCccHHHHhcCCHHHHHHHH------CHHHHHHHHHHhCCCCC
Confidence 678899999888876543 35666677665555566666 77778888874 8864
No 232
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=41.61 E-value=12 Score=37.05 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.9
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 314 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~ 314 (527)
+..++||++.++++|-+.||.|++||...
T Consensus 5 ~~~l~gi~~~~~~kL~~~gi~t~~~~~~~ 33 (322)
T 2i1q_A 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATA 33 (322)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTC
T ss_pred HhhcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 34788999999999999999999999854
No 233
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=40.70 E-value=7 Score=38.95 Aligned_cols=75 Identities=9% Similarity=0.282 Sum_probs=43.6
Q ss_pred cccchhhhcCCCCCCHHHHHHHHHHHHhCCc--hhhHHHHhhchhHHHHHHhhc--cCcCHHHHHHHHHh----CCCCHH
Q 009742 238 KIESADQVKGLPGIGKSMQDHIQEIVTTGKL--SKLEHFEKDEKVRTISLFGEV--WGIGPATAQKLYEK----GHRTLD 309 (527)
Q Consensus 238 ~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~--~~le~l~~~~~~~~l~lf~~I--~GvGpktA~~ly~~----GirTle 309 (527)
++.+.+||..++|+.+.+-.++..++.---. ..+ .+-.-.+.. ..+|..+ +|||+..|+++.+. |+.+++
T Consensus 153 ~~~~~~EL~~v~G~~~~~~~~l~p~vtv~p~~~~~i-NiNTa~~~~-a~vL~al~~~~i~~~~A~~ii~~R~~~gf~~v~ 230 (298)
T 3ci0_K 153 PLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQI-NINTLDVTQ-SVILEALFDPWLSPVQARALLQQRPAKGWEDVD 230 (298)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHTTTEECCSCSSCCE-ETTTCCGGG-THHHHHHTC-------CCHHHHTCCTTCCSCHH
T ss_pred CCCCHHHHHhccCCCHHHHHhhcCeEEEecCCCcce-eccccChhh-HHHHHHhcCCCCCHHHHHHHHHhcccCCCCCHH
Confidence 5788899999999999999998887754210 111 110000001 2233345 89999999999862 899999
Q ss_pred HHhhc
Q 009742 310 DLKNE 314 (527)
Q Consensus 310 dL~~~ 314 (527)
|+.+.
T Consensus 231 ~~~~~ 235 (298)
T 3ci0_K 231 QFLAQ 235 (298)
T ss_dssp HHHTS
T ss_pred HHHhh
Confidence 99853
No 234
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=39.86 E-value=12 Score=33.99 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.4
Q ss_pred HHHHhhccCcCHHHHHHHH
Q 009742 283 ISLFGEVWGIGPATAQKLY 301 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly 301 (527)
.+.+.++||||+.||..+-
T Consensus 103 ~~~L~~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 103 WKYPIELHGIGKYGNDSYR 121 (161)
T ss_dssp CSSGGGSTTCCHHHHHHHH
T ss_pred hhhhhcCCCchHHHHHHHH
Confidence 3456699999999999863
No 235
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=39.48 E-value=24 Score=35.90 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=38.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|||||+.+++++..+ -+.-+.+|.+-.+....+.| |++...+||+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNEL----GIQKLRDILSKNYNELEKIT------GKAKALYLLKLAQDEYN 235 (362)
T ss_dssp STTSTTCCSTTHHHHHHT----TCCBGGGGTTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred hhhccCCCHHHHHHHHHc----CCChHHHHhcCCHHHHHHHh------ChHHHHHHHHHhcCCCC
Confidence 678999999999987764 35556666655555556666 88889999973 8864
No 236
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=38.44 E-value=9.5 Score=31.14 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.7
Q ss_pred CcCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhh
Q 009742 291 GIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDI 331 (527)
Q Consensus 291 GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~yed~ 331 (527)
++.++...-|-+.||.|+.||.+. ..|-+...||-+..+++
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI 60 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEI 60 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHH
Confidence 667888888888899999999853 34677777777665544
No 237
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=38.17 E-value=11 Score=30.36 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=32.2
Q ss_pred cCcCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhccccchhhhc
Q 009742 290 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 332 (527)
Q Consensus 290 ~GvGpktA~~ly~~GirTledL~~~--~~L~~~q~~Glk~yed~~ 332 (527)
-++.++...-|-+.||.|+.||.+. ..|.++.+||-+..+++.
T Consensus 21 L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 21 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHH
Confidence 3667777888888899999999853 347777888877665544
No 238
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=37.25 E-value=29 Score=36.22 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=37.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhh-chhHHHHHHhhccCcCHHHHHHHHHh--CCCCH
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEK--GHRTL 308 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~-~~~~~l~lf~~I~GvGpktA~~ly~~--GirTl 308 (527)
+..|||||+.+++++..-+ .-+.-+.+|.+- .+....+.| |++...++|+. |+..-
T Consensus 243 v~~l~GiG~~~~~~L~~~~--~GI~ti~dL~~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~~ 301 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTF--DSPHSLNDLRKRYTLDALKASV------GSKLGMKIHLALQGQDDE 301 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHT--TCCCSHHHHHHHCCHHHHHHHH------CSSHHHHHHHHTTTCCCH
T ss_pred cccccCcCHHHHHHHHHhc--CCceEHHHHHhcCCHHHHHHHh------CHHHHHHHHHHhcCCCcc
Confidence 6788999999998887721 124455566554 444455555 66778888875 99763
No 239
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=35.26 E-value=34 Score=32.41 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 221 r~~aY~rAa~~l~~l~~~i~---------s~~~l~~lpgIG~~ia~kI~Ei 262 (527)
|+..-..+|..+..=...+. ..++|..|||||..+|+.|.=+
T Consensus 115 KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 115 KVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555666666654111111 1367999999999999988744
No 240
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=34.06 E-value=33 Score=32.66 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhc--CCc--cccc------hhhhcCCCCCCHHHHHHHHHH
Q 009742 221 RSFSYYKAIPVIEK--LPF--KIES------ADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 221 r~~aY~rAa~~l~~--l~~--~i~s------~~~l~~lpgIG~~ia~kI~Ei 262 (527)
|+..-..+|..+.+ +|. .+.. .++|..|||||+.+|+.|.=+
T Consensus 107 Ka~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 107 KIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 45555666666653 221 1111 467999999999999988743
No 241
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=33.26 E-value=18 Score=36.79 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.1
Q ss_pred HHHHHhhccCcCHHHHHHHHHh
Q 009742 282 TISLFGEVWGIGPATAQKLYEK 303 (527)
Q Consensus 282 ~l~lf~~I~GvGpktA~~ly~~ 303 (527)
.++.|++++|||++||..+--.
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 5667779999999999988643
No 242
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=32.94 E-value=57 Score=32.01 Aligned_cols=66 Identities=23% Similarity=0.444 Sum_probs=35.9
Q ss_pred HHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh-CC-CCHHHHhhcc---Ccchhhhcccc
Q 009742 259 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH-RTLDDLKNED---SLTHSQRLGLK 326 (527)
Q Consensus 259 I~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-Gi-rTledL~~~~---~L~~~q~~Glk 326 (527)
|+-+.+.|++++ |..++....+ +..+++-.|||.|||.+|.+. |- .-+.+|-++- +|+...+.|-+
T Consensus 388 iermyeegrlse-eayraaveiq-laeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvger 458 (519)
T 2csb_A 388 IERMYEEGRLSE-EAYRAAVEIQ-LAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGER 458 (519)
T ss_dssp HHHHHHHTSSCH-HHHHHHHHHH-HHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHH
T ss_pred HHHHHHcccccH-HHHHHHHHHH-HHHHhhhcccchhHHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHHH
Confidence 444445565553 1223322222 344679999999999999876 53 3333333322 34555555533
No 243
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=30.63 E-value=33 Score=33.92 Aligned_cols=59 Identities=22% Similarity=0.402 Sum_probs=38.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHH-HHhh-chhHHHHHHhhcc-C-----cCHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH-FEKD-EKVRTISLFGEVW-G-----IGPATAQKLYEK 303 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~-l~~~-~~~~~l~lf~~I~-G-----vGpktA~~ly~~ 303 (527)
..|..||||+...|..|.+- -++...|-. ++.- .+....+||.++. | |||..++++|+.
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~--ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~ 303 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH--YSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQL 303 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH--CSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH--CCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHH
Confidence 67999999999999888754 344554432 3221 1222333565663 4 999999999974
No 244
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=30.13 E-value=60 Score=34.02 Aligned_cols=52 Identities=13% Similarity=0.281 Sum_probs=34.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|||||+.+++++..+ -+..+.+|... +....+.| |++++..||+. |+..
T Consensus 284 v~~l~GiG~~~~~~L~~l----GI~T~gdL~~~-~~~L~~~f------G~~~~~~l~~~a~G~d~ 337 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKAL----GIITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 337 (459)
T ss_dssp GGGCTTSCHHHHHHHHHT----TCCBHHHHHHT-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred HHhcCCcCHHHHHHHHHc----CCCcHHHHHhh-HHHHHHHh------ChHhHHHHHHHHcCCCC
Confidence 678999999988877553 34455555543 33344444 78888889874 8854
No 245
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=30.00 E-value=57 Score=34.56 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHhhhcCCCeEEEecccccccCCc-cCCeeEEEecCC
Q 009742 345 RLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 384 (527)
Q Consensus 345 ~iv~~~~~~~~p~~~v~~~GsyRRGke~-~gDVDiLIt~~~ 384 (527)
..|+++.....|+++|.+-||+.=|--. .+|||++|..++
T Consensus 160 ~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~ 200 (464)
T 3pq1_A 160 SLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDE 200 (464)
T ss_dssp HHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCC
Confidence 3445555557899999999999987654 689999986543
No 246
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=29.26 E-value=76 Score=25.46 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=37.0
Q ss_pred ccCcCHHHHHHHHHhCCCCHHHHhhccCcchhhhccccchhhhccCcCHHHHHHHHHHHHHH
Q 009742 289 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 350 (527)
Q Consensus 289 I~GvGpktA~~ly~~GirTledL~~~~~L~~~q~~Glk~yed~~~~i~r~Ea~~i~~iv~~~ 350 (527)
+||+-+..++.|-+.||+|.+|+.....+.-++..|+- ...+.++...+.+.
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls----------~~~v~~l~r~l~~~ 60 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS----------YKALVALRRVLLAQ 60 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCC----------HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCC----------HHHHHHHHHHHHHH
Confidence 48999999999999999999999976644444444543 45666665554443
No 247
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=29.05 E-value=1.4e+02 Score=29.38 Aligned_cols=96 Identities=10% Similarity=0.198 Sum_probs=63.8
Q ss_pred cCCChhHHH-------HHHHHHHHhcCCccccc--hhhhcCCCCCCHHHHHHHHHHHHh------------CCchhhHHH
Q 009742 216 LGEDRRSFS-------YYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTT------------GKLSKLEHF 274 (527)
Q Consensus 216 ~g~~~r~~a-------Y~rAa~~l~~l~~~i~s--~~~l~~lpgIG~~ia~kI~Eil~t------------G~~~~le~l 274 (527)
.++.+...| -..||.+|..||..+.. +..+..+..+-+.+.+.|.+.|+. |-...+-++
T Consensus 71 ~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~I 150 (279)
T 3pkr_A 71 INEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEI 150 (279)
T ss_dssp TTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHH
T ss_pred HhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHH
Confidence 355554444 35899999999998665 367788888999999999988864 123445555
Q ss_pred HhhchhHHH-HHHhhccCcCHHHHHHHHHhCCCCHHHHh
Q 009742 275 EKDEKVRTI-SLFGEVWGIGPATAQKLYEKGHRTLDDLK 312 (527)
Q Consensus 275 ~~~~~~~~l-~lf~~I~GvGpktA~~ly~~GirTledL~ 312 (527)
.|......- .+|.++--.-|..|.++ +.-+=+++||.
T Consensus 151 LN~~d~~~e~~iL~~L~~~dpelAe~I-r~~MF~FeDl~ 188 (279)
T 3pkr_A 151 FNRLGQKSAKTTLARIESVDNKLAGAI-KEMMFTFEDIV 188 (279)
T ss_dssp HHTSCHHHHHHHHHHHHTTCHHHHHHH-HTTSCCGGGGG
T ss_pred HHcCChHHHHHHHHHHHhhCHHHHHHH-HHhccCHHHHh
Confidence 555444433 35666666677777777 33455666665
No 248
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=28.62 E-value=31 Score=32.71 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 009742 242 ADQVK-GLPGIGKSMQDHIQEI 262 (527)
Q Consensus 242 ~~~l~-~lpgIG~~ia~kI~Ei 262 (527)
.++|. +|||||..+|+.|--+
T Consensus 123 re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 123 REFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 46788 9999999999998654
No 249
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=28.32 E-value=2.7e+02 Score=30.31 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=36.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
-.|.+|||||...|.++. +.| +..++++. -.+....+++ |++.++++++
T Consensus 657 ~~L~qlp~i~~~rar~L~---~~g-~~s~~~l~-~~~~~l~~~l------~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY---NNG-IKELGDVV-MNPDKVKNLL------GQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH---HTT-CCSHHHHH-HCHHHHHHHH------CHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH---HcC-CCCHHHHh-CCHHHHHHHh------ChhHHHHHHH
Confidence 468899999999999864 555 47777887 5666677776 3666666665
No 250
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=27.89 E-value=3.9e+02 Score=26.17 Aligned_cols=52 Identities=4% Similarity=0.126 Sum_probs=32.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
..|.+|||||..+++++. +. .+..+++|..-.+...-++ -|+++..++.+++
T Consensus 157 ~pL~Qlp~i~~~~~~~l~---~~-~i~s~~~l~~~~~~e~~~l----l~~~~~~~~~v~~ 208 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK---EI-NVETVYDIMALEDEERDEI----LTLTDSQLAQVAA 208 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH---HT-TCCSHHHHHHSCHHHHHHH----CCCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH---hC-CCCCHHHHhcCCHHHHHhH----hCCCHHHHHHHHH
Confidence 358899999999988865 33 3445666654344333333 2677766666543
No 251
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=27.39 E-value=21 Score=33.94 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 009742 242 ADQVK-GLPGIGKSMQDHIQEI 262 (527)
Q Consensus 242 ~~~l~-~lpgIG~~ia~kI~Ei 262 (527)
.++|. .|||||..+|+.|--+
T Consensus 128 r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 128 REFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 46788 9999999999988644
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.30 E-value=14 Score=36.72 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred HhhccCcCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhccccchhhhc
Q 009742 286 FGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 332 (527)
Q Consensus 286 f~~I~GvGpktA~~ly~~GirTledL~~~~--~L~~~q~~Glk~yed~~ 332 (527)
+..++||++.++++|-+.||.|++++.... .|....++.....+.+.
T Consensus 14 ~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~ 62 (324)
T 2z43_A 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKII 62 (324)
T ss_dssp -------------------------------------------------
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHH
Confidence 346789999999999999999999998543 35555555444333333
No 253
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=25.59 E-value=15 Score=39.95 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=7.9
Q ss_pred hccCcCHHHHHHHHHh-CCCCHHHHhhcc-Ccchhhhccccchhhhc
Q 009742 288 EVWGIGPATAQKLYEK-GHRTLDDLKNED-SLTHSQRLGLKYFDDIK 332 (527)
Q Consensus 288 ~I~GvGpktA~~ly~~-GirTledL~~~~-~L~~~q~~Glk~yed~~ 332 (527)
+=+||+++.|.++|+. |-.+++-|+++. +|....++|++..+.|.
T Consensus 15 ~~~g~~~~~a~~i~~~yg~~~~~~i~~nPy~l~~i~gigf~~aD~ia 61 (574)
T 3e1s_A 15 QGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLW 61 (574)
T ss_dssp -----------------------------CGGGTSSSCCHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCcCCCCHHHHHHHH
Confidence 4555555555555554 555555555432 44334455555444444
No 254
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=25.34 E-value=32 Score=27.35 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCCCHHHHh
Q 009742 294 PATAQKLYEKGHRTLDDLK 312 (527)
Q Consensus 294 pktA~~ly~~GirTledL~ 312 (527)
-+....|++.|++|++|++
T Consensus 64 ~~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 64 NAILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 3557889999999999985
No 255
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=25.07 E-value=32 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=33.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH-----HhhchhHHHHHHhhccCcCHHHHHHHHH
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF-----EKDEKVRTISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l-----~~~~~~~~l~lf~~I~GvGpktA~~ly~ 302 (527)
.++..+||||+..+.+..| .|--.-+.-| .........+-|..+-|+-.|-|..-|+
T Consensus 18 K~V~evpGIG~~~~~~L~~---~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~ 79 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE---RGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFG 79 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH---TTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH---cCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4689999999999998887 4433222111 1111222334444555777777666554
No 256
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=24.60 E-value=42 Score=27.22 Aligned_cols=20 Identities=15% Similarity=-0.084 Sum_probs=16.2
Q ss_pred HHHHhhccCcCHHHHHHHHH
Q 009742 283 ISLFGEVWGIGPATAQKLYE 302 (527)
Q Consensus 283 l~lf~~I~GvGpktA~~ly~ 302 (527)
-.....++|||++++++|-+
T Consensus 57 ~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 57 GKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp HHHHHTCTTTCHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHHHHH
Confidence 44456999999999999864
No 257
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=24.35 E-value=52 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTT 265 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~t 265 (527)
+++.+++++|++....|.+.|+.
T Consensus 56 ~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 56 VELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999964
No 258
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=24.27 E-value=91 Score=32.42 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=34.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh--CCCC
Q 009742 245 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 307 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--GirT 307 (527)
+..|+|||.++..++-+-+ | +..+.+|.+-.+....+.| |++++..||+. |+..
T Consensus 255 v~~l~GiG~~~~~~lL~~l--G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 310 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEIL--G-IEYMGELTQFTESQLQSHF------GEKNGSWLYAMCRGIEH 310 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHH--T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred HHHhcCCCHHHHHHHHHHc--C-CCcHHHHhhCCHHHHHHHh------CccHHHHHHHHhhCCCC
Confidence 6788999998877643322 2 3344455543444455555 68899999874 8863
No 259
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.21 E-value=8.2 Score=34.55 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.7
Q ss_pred HHhhccCcCHHHHHHHHHh-CC
Q 009742 285 LFGEVWGIGPATAQKLYEK-GH 305 (527)
Q Consensus 285 lf~~I~GvGpktA~~ly~~-Gi 305 (527)
-|+.|+|||+.+|..+.+. ||
T Consensus 63 aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 63 SLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp GGGGSTTCCSSTTTGGGTTTTC
T ss_pred eeeeecCccHHHHHHHHHHcCC
Confidence 4589999999999999876 88
No 260
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=22.54 E-value=33 Score=36.80 Aligned_cols=19 Identities=5% Similarity=0.317 Sum_probs=16.6
Q ss_pred hcCCCCCCHHHHHHHHHHH
Q 009742 245 VKGLPGIGKSMQDHIQEIV 263 (527)
Q Consensus 245 l~~lpgIG~~ia~kI~Eil 263 (527)
+..|+|||+++++++..++
T Consensus 309 V~~l~GIG~~t~~~L~~ll 327 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVL 327 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHhc
Confidence 5678999999999999884
No 261
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=22.13 E-value=17 Score=39.39 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh-CCCC
Q 009742 250 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 307 (527)
Q Consensus 250 gIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-GirT 307 (527)
||+.+++.+|....-... ++.+++ .||.. ..|+|||.+||..+-.. ||..
T Consensus 18 g~~~~~a~~i~~~yg~~~---~~~i~~-nPy~l----~~i~gigf~~aD~ia~~~g~~~ 68 (574)
T 3e1s_A 18 GLTINQAQRAVKHFGADA---LDRLEK-DLFTL----TEVEGIGFLTADKLWQARGGAL 68 (574)
T ss_dssp ------------------------------CGG----GTSSSCCHHHHHTTC-------
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHh-CCccc----CCcCCCCHHHHHHHHHHcCCCC
Confidence 889999999988775533 344444 46754 48999999999999876 8853
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=21.18 E-value=1.2e+02 Score=29.52 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=42.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhhccCcCHHHHHHHHHh-------CCCCHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLK 312 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-------GirTledL~ 312 (527)
.++..||||++.++.+..+- | +.-++.+....+ +.|..+.|+..++|.+|.+. |+.|-.++.
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~---g-i~t~~~~~~~~~----~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~ 71 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEA---G-YIDFMKIATATV----GELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLL 71 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHH---T-CCSHHHHHTCCH----HHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHH
T ss_pred ccHhhcCCCCHHHHHHHHHc---C-CCcHHHHHhCCH----HHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHH
Confidence 46888999999999987763 4 455666654332 23458999999999888742 566666664
No 263
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=20.96 E-value=38 Score=33.46 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.2
Q ss_pred hhhhcCCCCCCHHHHHHHHHH
Q 009742 242 ADQVKGLPGIGKSMQDHIQEI 262 (527)
Q Consensus 242 ~~~l~~lpgIG~~ia~kI~Ei 262 (527)
.++|..|||||+.+|+.|.-+
T Consensus 209 ~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 209 YEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 467999999999999998755
No 264
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=20.38 E-value=15 Score=36.44 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=36.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhh-chhHHHHHHhhc-cC-----cCHHHHHHHHHh
Q 009742 243 DQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKD-EKVRTISLFGEV-WG-----IGPATAQKLYEK 303 (527)
Q Consensus 243 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~-~~~~~l~lf~~I-~G-----vGpktA~~ly~~ 303 (527)
.+|..|||||...|..|.+.. .+...| +.++.. .+.....+|.++ .| |||..++++|+.
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~y--pTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~ 299 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDRY--STPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQL 299 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSSS--CSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHc--CCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHH
Confidence 679999999999888877632 233322 223220 111122344455 23 999999999985
Done!