BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009744
(527 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis
thaliana GN=ARID3 PE=2 SV=1
Length = 786
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/308 (76%), Positives = 268/308 (87%), Gaps = 4/308 (1%)
Query: 219 FLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGG 278
FLLD +G+ESGTEE+QS+FM+EL++FFR+R+M+FKPPKFYGEGLNCLKLWRAVTRLGG
Sbjct: 480 FLLDDASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGG 539
Query: 279 YEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQ 338
Y+KVT KLWRQVGESF+PPKTCTTVSWTFRGFYEKALL+YERHK S GEL +P+ + +
Sbjct: 540 YDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLELE 599
Query: 339 PMNIDNQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSR 398
PMNIDNQASGSGRARRDAA+RAMQGWHSQ + G+ E+SDP IKDKN + QK EKQ+ +
Sbjct: 600 PMNIDNQASGSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKREKQIGTT 659
Query: 399 -GLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVP 457
GL+KRK+ + E K A SKS LDV VVD+GPPADWVKINVQRT+DCFEVYALVP
Sbjct: 660 PGLLKRKRAA--EHGAKNA-IHVSKSMLDVTVVDVGPPADWVKINVQRTQDCFEVYALVP 716
Query: 458 GLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQL 517
GL+REEVRVQSDPAGRLVISGEPE+P NPWG TPFKKVVSLP RIDPH TSAVVTL+GQL
Sbjct: 717 GLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAVVTLNGQL 776
Query: 518 FVRVPFEQ 525
FVRVP EQ
Sbjct: 777 FVRVPLEQ 784
>sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis
thaliana GN=ARID5 PE=2 SV=1
Length = 434
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/305 (63%), Positives = 239/305 (78%), Gaps = 10/305 (3%)
Query: 226 EGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSC 285
E E+G ++Q +F++E+E F ++ +EFK PKFYG+ LNCLKLWRAV +LGGY+ VT+
Sbjct: 135 EVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTS 194
Query: 286 KLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNID-- 343
KLWRQVGESF PPKTCTTVSWTFR FYEKALL+YE+H GEL+LP ++ I+
Sbjct: 195 KLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNLPGSASLPSSGIEKE 254
Query: 344 ---NQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGL 400
+QASGSGR RRDAAARAMQGWHSQ +LGS E+++PI+K+K S K +K LK+ G+
Sbjct: 255 ASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPIVKEKGLNSTPK-QKNLKNIGV 313
Query: 401 IKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLL 460
K+K + M+L K S ++ V+D+GPPADWVKINV+ TKDCFE++ALVPGLL
Sbjct: 314 QKQKTTTGMDLVFSHESEKQSTAE----VIDVGPPADWVKINVRETKDCFEIFALVPGLL 369
Query: 461 REEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVR 520
REEVRVQSDPAGRLVI+G+PE DNPWG+TPFKKVV+ PARIDP TSAVV+LHG+LFVR
Sbjct: 370 REEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLHTSAVVSLHGRLFVR 429
Query: 521 VPFEQ 525
VPFEQ
Sbjct: 430 VPFEQ 434
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis
thaliana GN=ARID6 PE=2 SV=1
Length = 398
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/321 (58%), Positives = 244/321 (76%), Gaps = 11/321 (3%)
Query: 211 EKSNSAQLFLLDGNDEGS-ESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKL 269
E + + +LLD +G+ E+GT EQ +F+ E+E F+++ +EFKPPKFYG+ LN LKL
Sbjct: 83 ENAKKRKTWLLDSEAQGTDEAGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKL 142
Query: 270 WRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGEL 329
WRAV LGGYE VT+ KLWRQVGESF PPKTCTTVS+TFR FYEKALL+YE+ + GEL
Sbjct: 143 WRAVVNLGGYEVVTTNKLWRQVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGEL 202
Query: 330 SLPVASQSQPMNID-----NQASGSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKN 384
+LP ++ +++ +Q SGSGRARRD+AARAMQGWH+Q ++GS E++ P +KDK
Sbjct: 203 NLPGSTLILSSSVEKEPSSHQGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAVKDKG 262
Query: 385 HLSLQKCEKQLKSRGLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQ 444
+S K K+LKS GL K K+ + M+ V T + QL VVD+GP ADWVKINV+
Sbjct: 263 LISTPK-HKKLKSIGLQKHKQQTSMDHVV----TNEADKQLAAEVVDVGPVADWVKINVK 317
Query: 445 RTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDP 504
+KD FE++ALVPGLLR+EVR+QSDPAG++VI+G+PE DNPWG+TPFKK+V L ARIDP
Sbjct: 318 ESKDSFEIFALVPGLLRKEVRIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDP 377
Query: 505 HLTSAVVTLHGQLFVRVPFEQ 525
TSAV+++HG+LF+RVPFEQ
Sbjct: 378 LHTSAVMSMHGRLFIRVPFEQ 398
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 234 EEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGE 293
++ S F + L F S +F P G+ L+ L+ VTR GGYEKV K WR+VG
Sbjct: 39 KDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGG 98
Query: 294 SFKPPKTCTTVSWTFRGFYEKALLDYERHK--TSGGELSLPVAS 335
F+ T T+ S+ R Y L YE+ T+ G L P+A+
Sbjct: 99 VFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIAT 142
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 238 SFMEELENFFRDRSMEFKP-PKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFK 296
+F++EL F R FK P G+ L+ L+ VT LGG+ KV+ W ++ E F
Sbjct: 18 AFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFN 77
Query: 297 PPKTCTTVSWTFRGFYEKALLDYER 321
P++C+ ++ + +Y + L YE+
Sbjct: 78 FPRSCSNAAFALKQYYLRYLEKYEK 102
>sp|Q9JKB5|ARI4B_RAT AT-rich interactive domain-containing protein 4B OS=Rattus
norvegicus GN=Arid4b PE=2 SV=1
Length = 1228
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 238 SFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFK 296
+F+++L F DR K P LN KL+R V +LGG++ + S +W+QV +
Sbjct: 311 NFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLG 370
Query: 297 PPKTCTTVSWTFRGFYEKALLDYERHKTSGG---ELSLPVASQSQP 339
P + + + Y+K L +E + S +++LP ++P
Sbjct: 371 IPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIDFQMALPEKVLNKP 416
>sp|Q4LE39|ARI4B_HUMAN AT-rich interactive domain-containing protein 4B OS=Homo sapiens
GN=ARID4B PE=1 SV=2
Length = 1312
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 238 SFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFK 296
+F+++L F DR K P LN KL+R V +LGG++ + S +W+QV +
Sbjct: 311 NFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLG 370
Query: 297 PPKTCTTVSWTFRGFYEKALLDYERHKTSGG---ELSLP 332
P + + + Y+K L +E + S +++LP
Sbjct: 371 IPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMALP 409
>sp|A2CG63|ARI4B_MOUSE AT-rich interactive domain-containing protein 4B OS=Mus musculus
GN=Arid4b PE=1 SV=1
Length = 1314
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 238 SFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFK 296
+F+++L F DR K P LN KL+R V +LGG++ + S +W+QV +
Sbjct: 311 NFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLG 370
Query: 297 PPKTCTTVSWTFRGFYEKALLDYERHKTSGG---ELSLPVASQSQP 339
P + + + Y+K L +E + S +++LP ++P
Sbjct: 371 IPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIDFQMALPEKVLNKP 416
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 233 EEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQV 291
+E++ F+++L +F + R + P + L+ L++ VT GG +V + K+WR++
Sbjct: 232 DEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREI 291
Query: 292 GESFKPPKTCTTVSWTFRGFYEKALLDYE---RHKTSGGELSLPVAS 335
+ P + T+ ++T R Y K L YE R +S GEL + S
Sbjct: 292 TKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDS 338
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 217 QLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTR 275
QL+ LD + + E F+++L +F + R + P + L+ L+R VT
Sbjct: 103 QLYELDADPKRKE---------FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTA 153
Query: 276 LGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYE---RHKTSGGEL 329
GG +V + K+WR+V P T T+ ++T R Y K L YE R +S GEL
Sbjct: 154 KGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGEL 210
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 216 AQLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVT 274
A+L+ LDG+ E E F+++L F + R + P + L+ L++ VT
Sbjct: 207 AKLYELDGDPERKE---------FLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVT 257
Query: 275 RLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHK 323
GG ++ + K+WR++ + P + T+ ++T R Y K L YE K
Sbjct: 258 EKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEK 306
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 216 AQLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVT 274
A+L+ LDG+ E E F+++L F + R + P + L+ L++ VT
Sbjct: 205 AKLYELDGDPERKE---------FLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVT 255
Query: 275 RLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHK 323
GG ++ + K+WR++ + P + T+ ++T R Y K L YE K
Sbjct: 256 EKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEK 304
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 239 FMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPP 298
FM LE +F P G L+ KL+ VT GG K+ + + W++V +F P
Sbjct: 35 FMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFP 94
Query: 299 KTCTTVSWTFRGFYEKALLDYER 321
T T S+ R +Y L +YE+
Sbjct: 95 PTATNASYVLRKYYFSLLNNYEQ 117
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 217 QLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTR 275
QL+ LD + + E F+++L +F + R + P + L+ L+R VT
Sbjct: 106 QLYELDADPKRKE---------FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTA 156
Query: 276 LGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYE---RHKTSGGEL 329
GG +V + K+WR+V P T T+ ++T R Y K L YE R +S GEL
Sbjct: 157 KGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGEL 213
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 255 KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEK 314
+ P + L+ +L+R V + GG ++ + KLWR++ + P + T+ ++T R Y+K
Sbjct: 204 RIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQK 263
Query: 315 ALLDYERHK 323
L DYE K
Sbjct: 264 YLYDYECEK 272
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 217 QLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTR 275
QL+ LDG+ + E F+++L +F + R + P + L+ L+ VT
Sbjct: 202 QLYELDGDPKRKE---------FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTE 252
Query: 276 LGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHK 323
GG +V + KLWR++ + P + T+ ++T R Y K L YE K
Sbjct: 253 KGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 300
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 217 QLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTR 275
QL+ LDG+ + E F+++L +F + R + P + L+ L+ VT
Sbjct: 231 QLYELDGDPKRKE---------FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTE 281
Query: 276 LGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHK 323
GG +V + KLWR++ + P + T+ ++T R Y K L YE K
Sbjct: 282 KGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 329
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 217 QLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTR 275
QL+ LDG+ + E F+++L +F + R + P + L+ L+ VT
Sbjct: 205 QLYELDGDPKRKE---------FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTE 255
Query: 276 LGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHK 323
GG +V + KLWR++ + P + T+ ++T R Y K L YE K
Sbjct: 256 KGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 303
>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein 4A OS=Homo sapiens
GN=ARID4A PE=1 SV=3
Length = 1257
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 236 QSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGES 294
+ +F+++L F DR KPP + LN KL+R V GG + + S +W+Q+
Sbjct: 312 RDNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMD 371
Query: 295 FKPPKTCTTVSWTFRGFYEKALLDYERH 322
P + S+ + Y K L +E +
Sbjct: 372 LGIPILNSAASYNVKTAYRKYLYGFEEY 399
>sp|E7F888|ARI5B_DANRE AT-rich interactive domain-containing protein 5B OS=Danio rerio
GN=arid5b PE=3 SV=1
Length = 1044
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 225 DEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYG-EGLNCLKLWRAVTRLGGYEKVT 283
D G E T+E+ +F+ L + ++R + + G + +N +++A +LGGYE +T
Sbjct: 206 DGGDECRTDEQ--AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYEVIT 263
Query: 284 SCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYER 321
+ + W+ V + T+ + R YE+ +L YER
Sbjct: 264 ARRQWKNVYDELGGNPGSTSAATCTRRHYERLILPYER 301
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 239 FMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPP 298
F E+L F S K P G L+ +L+ VT GG E+V + W++V +F P
Sbjct: 46 FWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFP 105
Query: 299 KTCTTVSWTFRGFYEKALLDYE 320
T T+ S+ R +Y K L E
Sbjct: 106 TTITSASFVLRKYYLKFLFQLE 127
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 217 QLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTR 275
QL+ LD + + E F+++L +F + R + P + L+ L+ VT
Sbjct: 236 QLYELDADPKRKE---------FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTE 286
Query: 276 LGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYE 320
GG +V + KLWR++ + P + T+ ++T R Y K L YE
Sbjct: 287 KGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 331
>sp|Q3U108|ARI5A_MOUSE AT-rich interactive domain-containing protein 5A OS=Mus musculus
GN=Arid5a PE=1 SV=1
Length = 590
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 239 FMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKP 297
F+ L F ++R + P + +N K+++AV +LG YE VT +LW+ V +
Sbjct: 56 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 115
Query: 298 PKTCTTVSWTFRGFYEKALLDYERH 322
T+ + R YE+ +L Y RH
Sbjct: 116 SPGSTSAATCTRRHYERLVLPYVRH 140
>sp|Q3SWY1|ARI5A_BOVIN AT-rich interactive domain-containing protein 5A OS=Bos taurus
GN=ARID5A PE=2 SV=1
Length = 592
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 238 SFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFK 296
+F+ L F ++R + P + +N K+++AV +LG YE VT +LW+ V +
Sbjct: 57 AFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELG 116
Query: 297 PPKTCTTVSWTFRGFYEKALLDYERH 322
T+ + R YE+ +L Y RH
Sbjct: 117 GSPGSTSAATCTRRHYERLVLPYVRH 142
>sp|Q03989|ARI5A_HUMAN AT-rich interactive domain-containing protein 5A OS=Homo sapiens
GN=ARID5A PE=1 SV=2
Length = 594
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 239 FMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKP 297
F+ L F ++R + P + +N K+++AV +LG YE VT +LW+ V +
Sbjct: 61 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 120
Query: 298 PKTCTTVSWTFRGFYEKALLDYERH 322
T+ + R YE+ +L Y RH
Sbjct: 121 SPGSTSAATCTRRHYERLVLPYVRH 145
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 239 FMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKP 297
F+++L +F + R + P + L+ +L+R V GG +V + K+WR++ +
Sbjct: 255 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNL 314
Query: 298 PKTCTTVSWTFRGFYEKALLDYE 320
P + T+ ++T R Y K L +E
Sbjct: 315 PSSITSAAFTLRTQYMKYLYPFE 337
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 227 GSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYG-EGLNCLKLWRAVTRLGGYEKVTSC 285
G E +E+ +F+ L + ++R + + G + +N +++A +LGGYE +T+
Sbjct: 318 GEECRADEQ--AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITAR 375
Query: 286 KLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYER 321
+ W+ + + T+ + R YE+ +L YER
Sbjct: 376 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 411
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 227 GSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYG-EGLNCLKLWRAVTRLGGYEKVTSC 285
G E +E+ +F+ L + ++R + + G + +N +++A +LGGYE +T+
Sbjct: 317 GEECRADEQ--AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITAR 374
Query: 286 KLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYER 321
+ W+ + + T+ + R YE+ +L YER
Sbjct: 375 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 410
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 227 GSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYG-EGLNCLKLWRAVTRLGGYEKVTSC 285
G E +E+ +F+ L + ++R + + G + +N +++A +LGGYE +T+
Sbjct: 315 GEECRADEQ--AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITAR 372
Query: 286 KLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYER 321
+ W+ + + T+ + R YE+ +L YER
Sbjct: 373 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 408
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 227 GSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYG-EGLNCLKLWRAVTRLGGYEKVTSC 285
G E +E+ +F+ L + ++R + + G + +N +++A +LGGYE +T+
Sbjct: 314 GEECRADEQ--AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITAR 371
Query: 286 KLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYER 321
+ W+ + + T+ + R YE+ +L YER
Sbjct: 372 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 407
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 235 EQSSFMEELENFFRDRSMEFKPPKFYG-EGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGE 293
++ +F+ L + ++R + + G + +N +++A +LGGYE +T+ + W+ + +
Sbjct: 321 DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYD 380
Query: 294 SFKPPKTCTTVSWTFRGFYEKALLDYER 321
T+ + R YE+ +L YER
Sbjct: 381 ELGGNPGSTSAATCTRRHYERLILPYER 408
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 239 FMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPP 298
F E L +F +FK P G+ L+ +L+ VT GG EKV + ++V ++F
Sbjct: 40 FWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRCKEVIDAFNFK 99
Query: 299 KTCTTVSWTFRGFYEKALLDYE 320
T T ++ R Y K L ++E
Sbjct: 100 TTITNSAFVLRKSYLKMLFEFE 121
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 239 FMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKP 297
F+++L +F + R + P L+ +L+ V GG V + KLW+++ +
Sbjct: 299 FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHL 358
Query: 298 PKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQASGSGRARRDAA 357
P + T+ ++T R Y K L YE K + LS P Q+ ID G+ R R ++
Sbjct: 359 PSSITSAAFTLRTQYMKYLYPYECEKKN---LSTPAELQAA---ID----GNRREGRRSS 408
Query: 358 ARAMQGWHSQ 367
+ H+Q
Sbjct: 409 YGQYEAMHNQ 418
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 229 ESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKL 287
E T+ ++ F+++L ++ + R + P + L+ +L+ V GG +V + K
Sbjct: 198 ELSTDSKRKEFLDDLFSYMQKRGTPVNRIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQ 257
Query: 288 WRQVGESFKPPKTCTTVSWTFRGFYEKALLDYE 320
WR++ + P + T+ ++T R Y K L YE
Sbjct: 258 WREITKGLNLPASITSAAFTLRTQYMKYLYPYE 290
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 206 TLPMNEKSNS-AQLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEFKP-PKFYGEG 263
T+ +KS+S +L+ +D N ++ ++++L F +R P +
Sbjct: 981 TITTTKKSDSLCKLYEMDDN---------PDRRGWLDKLRAFMEERRTPITACPTISKQP 1031
Query: 264 LNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHK 323
L+ +L+ V GG+ +VT K W+ + ++ ++T R Y K LL +E H
Sbjct: 1032 LDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLG-IGASSSAAYTLRKHYTKNLLTFECHF 1090
Query: 324 TSGGELSLPVASQ 336
G LP+ Q
Sbjct: 1091 DRGDIDPLPIIQQ 1103
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 238 SFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKP 297
+F++++ F+ + K P + L+ L R V GG E+ T + W +V +
Sbjct: 231 NFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQY 290
Query: 298 PKTCTTVSWTFRGFYEKALLDYERHKTSGGEL 329
P + +V T + YE+ L +E + TSG L
Sbjct: 291 PSS-KSVGATLKAHYERILHPFEVY-TSGKVL 320
>sp|Q61T02|KDM5_CAEBR Lysine-specific demethylase rbr-2 OS=Caenorhabditis briggsae
GN=rbr-2 PE=3 SV=2
Length = 1482
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 234 EEQSSFMEELENFFRDRSMEFK-PPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVG 292
+E+ +F+E L NF R ++F+ P G ++ +L R V GG E+V + WR V
Sbjct: 127 KEKHTFIERLVNFNRYSGLQFEFPVDRDGNVVDLYRLHRIVQNFGGCEEVNDEERWRDVA 186
Query: 293 ESFKPPKTCT 302
+ P + T
Sbjct: 187 REYLPKEQMT 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,228,516
Number of Sequences: 539616
Number of extensions: 8459656
Number of successful extensions: 24677
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 567
Number of HSP's that attempted gapping in prelim test: 23267
Number of HSP's gapped (non-prelim): 1574
length of query: 527
length of database: 191,569,459
effective HSP length: 122
effective length of query: 405
effective length of database: 125,736,307
effective search space: 50923204335
effective search space used: 50923204335
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)