RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009744
(527 letters)
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 106 bits (265), Expect = 5e-28
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 229 ESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKL 287
E + ++ F+++L +F + R + P L+ +L+ V GG V + KL
Sbjct: 16 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 75
Query: 288 WRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQ 338
W+++ + P + T+ ++T R Y K L YE K + LS P Q+
Sbjct: 76 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKN---LSTPAELQAA 123
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 105 bits (263), Expect = 6e-28
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 234 EEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVG 292
++ +F+ L + ++R + P + +N +++A +LGGYE +T+ + W+ +
Sbjct: 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIY 61
Query: 293 ESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLP 332
+ T+ + R YE+ +L YER + LP
Sbjct: 62 DELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLP 101
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 98.8 bits (246), Expect = 2e-25
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 229 ESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKL 287
E G E E+ +++ F +++M P + L+ +L+ +V +GG +V K
Sbjct: 14 ELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKK 73
Query: 288 WRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPV 333
WR++ + T ++ + + + Y + L +E G + +
Sbjct: 74 WRELATNLNVG-TSSSAASSLKKQYIQCLYAFECKIERGEDPPPDI 118
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 102
Score = 86.4 bits (214), Expect = 3e-21
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 233 EEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQV 291
++ FM+ L + R+M P+ +N L+ V + GG ++VT + W V
Sbjct: 2 NKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMV 61
Query: 292 GESFKPPKTCTTVSWTFRGFYEKALLDYERHKTS 325
+ + Y + LL YERH S
Sbjct: 62 AQRLQISDYQQL-----ESIYFRILLPYERHMIS 90
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 37.3 bits (86), Expect = 8e-04
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 438 WVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVIS---------GEPEHPDNPWG 488
++ I++ +V A +PG+ +E++ + + + + E
Sbjct: 10 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE 69
Query: 489 VTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522
+ + LPA + SA +G L V +P
Sbjct: 70 EEEIYRTIKLPATVKEENASAKFE-NGVLSVILP 102
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 37.4 bits (86), Expect = 0.001
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVT--------- 490
+++ + T + A +PG+ +EEV+V+ + LV+SGE
Sbjct: 44 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSG 103
Query: 491 PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522
F + L A + +G L V VP
Sbjct: 104 KFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVP 134
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 30.8 bits (68), Expect = 0.39
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 355 DAAARA--MQGWHSQHVLGSDEISDPIIK--DKNHLSLQKCEKQLKSRGLIKRKKPSYM 409
D AR + G+ + + G+DE + + + + ++ R
Sbjct: 30 DFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIA 88
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 27.0 bits (60), Expect = 1.3
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 12/46 (26%)
Query: 380 IKDKNHLS---LQKCEKQLKSRGLIKRKKPSYMELAVKAARTKTSK 422
++ K++L + K K L+S+ LIK AVK+ K
Sbjct: 35 VRYKSNLPLTEINKILKNLESKKLIK---------AVKSVAASKKK 71
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 28.3 bits (62), Expect = 2.4
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 355 DAAAR--AMQGWHSQHVLGSDEISDPIIK 381
D R M+G + D PI+
Sbjct: 29 DVWVRYQRMRGHEVNFICADDAHGTPIML 57
>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase
RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Length = 176
Score = 27.4 bits (60), Expect = 3.0
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 375 ISDPII--KDKNHLSLQKCEK 393
I + II KD SL+K E
Sbjct: 154 IKEVIISDKDLQCPSLEKAEV 174
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 90
Score = 25.4 bits (56), Expect = 6.8
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 384 NHLSLQKCEKQLKSRGLIKRKKPSYM 409
++ + K L +I+++ YM
Sbjct: 31 SYALTGRYIKMLMDLEIIRQEGKQYM 56
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 183
Score = 26.2 bits (57), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 373 DEISDPII--KDKNHLSLQKCEKQL 395
+ + D II KD+N L++ L
Sbjct: 159 EMVDDLIISEKDRNWKPLRENPVYL 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.126 0.357
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,796,924
Number of extensions: 81061
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 14
Length of query: 527
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 438
Effective length of database: 1,185,626
Effective search space: 519304188
Effective search space used: 519304188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.1 bits)