BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009745
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTB|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1) - Dgtp Complex
pdb|3OTB|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1) - Dgtp Complex
pdb|3OTC|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native Ii
pdb|3OTC|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native Ii
pdb|3OTD|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Nai Derivative
pdb|3OTD|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Nai Derivative
pdb|3OTE|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native I
pdb|3OTE|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native I
Length = 269
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 173/268 (64%), Gaps = 10/268 (3%)
Query: 267 VGKIKPDYVRSFVFENKLIPSTWIVIRIDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVA 326
+ K K +YVR F ++ + W+V+R+DG +FHRF+E H F KPND +AL LM CA
Sbjct: 1 MAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQT 60
Query: 327 VLEEFEDITFAYGVSDEYSFVLKNASMFYQRQASEIVSVIVSFFTSMYVVKWKEFFPQKK 386
V+EE EDI AYG SDEYSFV K + +++R+AS+ ++ + S F S YV W+++F +
Sbjct: 61 VMEELEDIVIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQP 120
Query: 387 LNYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINNQYNTCFWMLV-KSGKSKSEAQGCLK 445
L YPP FDGR V YPS+ ++DYL+WRQ DCHINN YNT FW L+ +SG + +AQG L+
Sbjct: 121 LLYPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQSGLTPVQAQGRLQ 180
Query: 446 GTQAREKNELLIQKFGIDYSKLPLMFRQGSSIFRARTEKSVASENKSSVEKVWNKVLVS- 504
GT A +KNE+L +F I+Y+ M+R+G+ + + ++ + E K E K+ V+
Sbjct: 181 GTLAADKNEILFSEFNINYNNELPMYRKGTVLIWQKVDEVMTKEIKLPTEMEGKKMAVTR 240
Query: 505 --------HCNIIEPSFWMAHPSILNEE 524
HC+II +FW HP IL+E+
Sbjct: 241 TRTKPVPLHCDIIGDAFWKEHPEILDED 268
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 162/268 (60%), Gaps = 10/268 (3%)
Query: 1 MANSKYEYVKSFEVEDEIFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVA 60
MA SK+EYV+ FE +D + +VVR+ GR+F RF+ H F KPND RAL LM CA
Sbjct: 1 MAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQT 60
Query: 61 VLEEYPDIVFSYGYSDEYSFVFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKE 120
V+EE DIV +YG SDEYSFVFKR + +++RRASK ++ + S F S YV W+++F +
Sbjct: 61 VMEELEDIVIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQP 120
Query: 121 FRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIKH-GKSENEAQEILK 179
YPP F RV+ S + L+ YL+WRQ DCH+NN Y T W LI+ G + +AQ L+
Sbjct: 121 LLYPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQSGLTPVQAQGRLQ 180
Query: 180 GTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTEMEDIV--------KYNENGAPVKR 231
GT +KNE+LF +F +NY M+R+G+ + ++++++ + V R
Sbjct: 181 GTLAADKNEILFSEFNINYNNELPMYRKGTVLIWQKVDEVMTKEIKLPTEMEGKKMAVTR 240
Query: 232 LRRKARIVHSENIAGKSFWNGHSCLLKE 259
R K +H + I G +FW H +L E
Sbjct: 241 TRTKPVPLHCD-IIGDAFWKEHPEILDE 267
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 39/92 (42%)
Query: 273 DYVRSFVFENKLIPSTWIVIRIDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVAVLEEFE 332
DY + + ++ + +DG + S H F +E N A V +
Sbjct: 27 DYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR 86
Query: 333 DITFAYGVSDEYSFVLKNASMFYQRQASEIVS 364
+I F G ++ + +K A+ FYQ++ I++
Sbjct: 87 EIVFTSGATESDNLAIKGAANFYQKKGKHIIT 118
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 39/92 (42%)
Query: 273 DYVRSFVFENKLIPSTWIVIRIDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVAVLEEFE 332
DY + + ++ + +DG + S H F +E N A V +
Sbjct: 8 DYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR 67
Query: 333 DITFAYGVSDEYSFVLKNASMFYQRQASEIVS 364
+I F G ++ + +K A+ FYQ++ I++
Sbjct: 68 EIVFTSGATESDNLAIKGAANFYQKKGKHIIT 99
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 117 PLKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIKHGKSENEA 174
P+K+FR P ++ S + W + +V+ +Y+ L +I HGK N+A
Sbjct: 373 PVKDFRPSPG----QLTSVSFPSWARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDA 426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,262,487
Number of Sequences: 62578
Number of extensions: 677201
Number of successful extensions: 1452
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 8
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)