Query 009745
Match_columns 527
No_of_seqs 279 out of 630
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 16:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2721 Uncharacterized conser 100.0 4.4E-92 9.5E-97 673.7 20.4 252 7-259 1-258 (260)
2 KOG2721 Uncharacterized conser 100.0 1.7E-91 3.6E-96 669.8 19.6 253 273-525 1-260 (260)
3 COG4021 Uncharacterized conser 100.0 4.1E-78 9E-83 577.1 20.2 246 2-253 1-248 (249)
4 COG4021 Uncharacterized conser 100.0 7.5E-77 1.6E-81 568.5 20.4 244 268-517 1-248 (249)
5 PF04446 Thg1: tRNAHis guanyly 100.0 3.4E-51 7.3E-56 374.1 11.9 131 5-135 1-135 (135)
6 PF04446 Thg1: tRNAHis guanyly 100.0 1.5E-50 3.3E-55 369.7 11.6 131 271-401 1-135 (135)
7 PF14413 Thg1C: Thg1 C termina 100.0 2.3E-44 5.1E-49 323.1 7.5 119 136-257 1-120 (120)
8 PF14413 Thg1C: Thg1 C termina 100.0 5E-44 1.1E-48 321.0 7.5 117 402-521 1-120 (120)
9 PF07357 DRAT: Dinitrogenase r 23.3 79 0.0017 32.8 3.3 70 388-457 113-190 (262)
10 KOG0464 Elongation factor G [T 19.3 76 0.0016 35.4 2.3 111 294-416 219-334 (753)
No 1
>KOG2721 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-92 Score=673.75 Aligned_cols=252 Identities=60% Similarity=1.044 Sum_probs=234.3
Q ss_pred chhhccccccccCCCCeEEEEEeCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEeccceeEEEeecCc
Q 009745 7 EYVKSFEVEDEIFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVAVLEEYPDIVFSYGYSDEYSFVFKRTS 86 (527)
Q Consensus 7 eyvk~fE~~~~l~p~~~ivVRlDGr~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf~~~~ 86 (527)
||||+||.+|.++|+||||||||||+|||||+.|+|+||||++++++||+||.+||++++||++|||+||||||||++++
T Consensus 1 eYVksFE~~d~~lp~~~iVvRIDGr~FhrFs~~h~FeKPNDe~aLnLMnscA~~Vl~ef~DIv~AyG~SDEYSFV~kk~t 80 (260)
T KOG2721|consen 1 EYVKSFEVEDEVLPPCWIVVRIDGRDFHRFSKVHEFEKPNDETALNLMNSCASAVLEEFPDIVFAYGYSDEYSFVFKKST 80 (260)
T ss_pred CchhhhhcccccccceEEEEEEcCcchhhhhhhhcccCCChHHHHHHHHHHHHHHHHhccceEEEeccCcceeeeeccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcceeeeecCCHHHHHHHHHHHhhHHHHhhhhhHHHHHHHH
Q 009745 87 KFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETCLWMLIK 166 (527)
Q Consensus 87 ~~f~rR~~KL~S~~aS~~Ss~f~~~~~~~fp~~~L~~pp~FD~Rvv~~Ps~~~v~dYl~WRQ~D~hrNnl~n~~fw~Lv~ 166 (527)
.+|+||.+||+|++||+|||+|++.|+++||+.+|.+||+||||||+||+.+.++|||+|||+|||+||||||||||||+
T Consensus 81 ~~fkRr~sKi~s~v~SfF~s~YV~~W~~ffp~~~L~y~PsFdgrvV~yps~q~LkdYLaWRq~DcHinNlYnT~fWmLv~ 160 (260)
T KOG2721|consen 81 ELFKRRASKILSLVASFFASVYVTKWKKFFPHLKLLYAPSFDGRVVSYPSVQVLKDYLAWRQVDCHINNLYNTCFWMLVK 160 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCCCcEEecccHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cCCCHHHHHHHhcCCChhHHHHHHHHhhCCCCCCCcccccCCeEEEEeeeec-cccc--cCCCC--ccceeeeeeeEee
Q 009745 167 -HGKSENEAQEILKGTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTEMED-IVKY--NENGA--PVKRLRRKARIVH 240 (527)
Q Consensus 167 -~g~s~~eA~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~~-~~~~--~~~g~--~~~~~r~k~~~~~ 240 (527)
+|+|+.||+++|+||.+++||||||++||||||++|++||+||++.|+++.. .-+. ...|. .++..|.+++ +.
T Consensus 161 ksG~t~~qaq~~Lkgt~s~ekneilf~efginyn~~p~~~rkGs~l~rk~v~~~~~k~~~~~~~k~~~~~~~~~k~l-p~ 239 (260)
T KOG2721|consen 161 KSGKTPSQAQEILKGTFSAEKNEILFSEFGINYNNEPEMFRKGSILIRKKVKGQEWKINTEIQGKKLFVTYTRTKPL-PL 239 (260)
T ss_pred HhCCChHHHHHHHHhhhhhhhhhHHHHHhCcccCCchHHHhcccEEEEecCCcceeeechhcccceeeeeeccCcce-eE
Confidence 9999999999999999999999999999999999999999999999998731 1111 11233 3344455544 69
Q ss_pred ccCcccccccccchhhHhh
Q 009745 241 SENIAGKSFWNGHSCLLKE 259 (527)
Q Consensus 241 ~~dii~d~fW~~~~~ll~~ 259 (527)
|+|||||+||.+||.+|..
T Consensus 240 ~~~~i~d~f~~~~p~~~~~ 258 (260)
T KOG2721|consen 240 HVDIIGDDFWKEHPEILDE 258 (260)
T ss_pred EEEEecCcccccCchhhcc
Confidence 9999999999999999865
No 2
>KOG2721 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-91 Score=669.76 Aligned_cols=253 Identities=59% Similarity=1.053 Sum_probs=238.9
Q ss_pred hhhhhccccCccCCCCeEEEEEeCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHhcCCeEEEEeecceeeEEeecCc
Q 009745 273 DYVRSFVFENKLIPSTWIVIRIDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVAVLEEFEDITFAYGVSDEYSFVLKNAS 352 (527)
Q Consensus 273 eyvk~fe~~~~l~p~~~ivvRiDGr~F~kft~~~~f~KP~D~r~~~~M~~~a~~l~~~~~~~~~aY~~SDEiSfvf~~~~ 352 (527)
||||+||.+|.++|.||||||||||+||+||+.|+|+||||++++++||+||.+||++|+||++|||+||||||||++.+
T Consensus 1 eYVksFE~~d~~lp~~~iVvRIDGr~FhrFs~~h~FeKPNDe~aLnLMnscA~~Vl~ef~DIv~AyG~SDEYSFV~kk~t 80 (260)
T KOG2721|consen 1 EYVKSFEVEDEVLPPCWIVVRIDGRDFHRFSKVHEFEKPNDETALNLMNSCASAVLEEFPDIVFAYGYSDEYSFVFKKST 80 (260)
T ss_pred CchhhhhcccccccceEEEEEEcCcchhhhhhhhcccCCChHHHHHHHHHHHHHHHHhccceEEEeccCcceeeeeccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccceeeeecCChhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 009745 353 MFYQRQASEIVSVIVSFFTSMYVVKWKEFFPQKKLNYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINNQYNTCFWMLVK 432 (527)
Q Consensus 353 ~~f~rR~~KL~S~~aS~~Ss~~~~~~~~~fp~~~L~~p~~FD~Rvv~~p~~~~v~dYl~WRQ~D~~rN~l~n~~fw~L~~ 432 (527)
.+|+||.+||+|.+||+|||.|++.|.++||+.+|.+||+||||||+||+.+.++|||+|||+|||+||+||||||||++
T Consensus 81 ~~fkRr~sKi~s~v~SfF~s~YV~~W~~ffp~~~L~y~PsFdgrvV~yps~q~LkdYLaWRq~DcHinNlYnT~fWmLv~ 160 (260)
T KOG2721|consen 81 ELFKRRASKILSLVASFFASVYVTKWKKFFPHLKLLYAPSFDGRVVSYPSVQVLKDYLAWRQVDCHINNLYNTCFWMLVK 160 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCCCcEEecccHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cCCChHHHhhhccCCchhHHHHHHHHHhCCCCCCcccccccceEEEEeeee-cccc-----ccCccccceeeeeEEeee
Q 009745 433 -SGKSKSEAQGCLKGTQAREKNELLIQKFGIDYSKLPLMFRQGSSIFRARTE-KSVA-----SENKSSVEKVWNKVLVSH 505 (527)
Q Consensus 433 -~g~s~~ea~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~-~~~~-----~~~~~~~~~~r~~v~~~~ 505 (527)
+|+|+.||+++|+||.+++||||||++||||||++|+++|+||++.|+++. +.-. .++.-.+++.|.++...|
T Consensus 161 ksG~t~~qaq~~Lkgt~s~ekneilf~efginyn~~p~~~rkGs~l~rk~v~~~~~k~~~~~~~k~~~~~~~~~k~lp~~ 240 (260)
T KOG2721|consen 161 KSGKTPSQAQEILKGTFSAEKNEILFSEFGINYNNEPEMFRKGSILIRKKVKGQEWKINTEIQGKKLFVTYTRTKPLPLH 240 (260)
T ss_pred HhCCChHHHHHHHHhhhhhhhhhHHHHHhCcccCCchHHHhcccEEEEecCCcceeeechhcccceeeeeeccCcceeEE
Confidence 999999999999999999999999999999999999999999999999872 1111 122233667788888899
Q ss_pred ccCCCccccccCCCcCCCCC
Q 009745 506 CNIIEPSFWMAHPSILNEEP 525 (527)
Q Consensus 506 ~dii~d~fW~~~~~~l~~~~ 525 (527)
+|||+|.||.+||.+|.+++
T Consensus 241 ~~~i~d~f~~~~p~~~~~~~ 260 (260)
T KOG2721|consen 241 VDIIGDDFWKEHPEILDEDS 260 (260)
T ss_pred EEEecCcccccCchhhccCC
Confidence 99999999999999998653
No 3
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.1e-78 Score=577.14 Aligned_cols=246 Identities=35% Similarity=0.592 Sum_probs=224.3
Q ss_pred CCcccchhhccccccccCCCCeEEEEEeCCCcccccccCCCCCCChHHHHHHHHHHHHHHHH-hCCCeEEEEeccceeEE
Q 009745 2 ANSKYEYVKSFEVEDEIFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVAVLE-EYPDIVFSYGYSDEYSF 80 (527)
Q Consensus 2 a~s~~eyvk~fE~~~~l~p~~~ivVRlDGr~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~-~~~~~~~aY~~SDEiSf 80 (527)
|+|+++||+++|..++++|+++||+|||||+||+||+.|+|+||||+|+++||++||+.+|. .++||++|||+||||||
T Consensus 1 ~k~~~~~~~evya~~R~~P~t~iVlRiDGr~Fhk~tk~l~FeKPyD~~f~~lM~~tA~~lv~~~~~~i~LaYtfSDE~sf 80 (249)
T COG4021 1 AKSKFMYVREVYAHDRILPQTYIVLRIDGRGFHKFTKFLDFEKPYDERFLKLMNATAKNLVLKYGLDIILAYTFSDEISF 80 (249)
T ss_pred CCCcchhhhhhhhhhcCCCCceEEEEecChhhhHHHhhcCcCCcchHHHHHHHHHHHHHHHHHhCCCeEEEEecccceEE
Confidence 78999999999999999999999999999999999999999999999999999999997776 56899999999999999
Q ss_pred EeecCcchhhhhhhhHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcceeeeecCCHHHHHHHHHHHhhHHHHhhhhhHH
Q 009745 81 VFKRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFRYPPSFHSRVISCASIEVLQQYLAWRQNDCHVNNQYETC 160 (527)
Q Consensus 81 vf~~~~~~f~rR~~KL~S~~aS~~Ss~f~~~~~~~fp~~~L~~pp~FD~Rvv~~Ps~~~v~dYl~WRQ~D~hrNnl~n~~ 160 (527)
|+++++.+|+||++||+|++||+|||+|+..|.++||.+ .+|+||||+|+|| .++|+|||.|||.||||||||||+
T Consensus 81 l~~~st~pF~gRveKL~Sv~~Sf~tS~f~r~~~~~~p~~---~~~sFDsR~V~~~-~~~i~dYf~wRQ~eawrN~L~s~t 156 (249)
T COG4021 81 LLKSSTVPFNGRVEKLDSVFASFFTSAFTRLWAKFFPEK---HLPSFDSRCVAYP-LDTIPDYFHWRQVEAWRNNLYSTT 156 (249)
T ss_pred EeecCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCC---CCCcccceEEecc-hhHHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999866 7899999999998 778999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhcCCChhHHHHHHHHhhCCCCCCCcccccCCeEEEEeeeeccccccCCCCccceeeee-eeEe
Q 009745 161 LWMLIKHGKSENEAQEILKGTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTEMEDIVKYNENGAPVKRLRRK-ARIV 239 (527)
Q Consensus 161 fw~Lv~~g~s~~eA~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~~~~~~~~~g~~~~~~r~k-~~~~ 239 (527)
||+|+..|++++||+++|+||++.+||||||+|||||||.+|+|||||+++||..+ .+.+|...+...+.|.+ ++-.
T Consensus 157 fW~L~~rgl~~~ea~erLrG~ks~e~heiLfsefGIN~~r~P~wqkkG~~~yRvp~--r~w~p~~~~es~~~r~~~~~~i 234 (249)
T COG4021 157 FWQLIIRGLTPQEAEERLRGTKSNEKHEILFSEFGINYNREPEWQKKGVGVYRVPV--RGWNPIRDEESLVTRKGEILHI 234 (249)
T ss_pred HHHHHHcCCChHHHHHHhcccccchHHHHHHHHhCCCcCCChHHHhcCceEEEccc--cccCCcchhHHHHHhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999873 34455444444344433 3345
Q ss_pred eccCcccccccccc
Q 009745 240 HSENIAGKSFWNGH 253 (527)
Q Consensus 240 ~~~dii~d~fW~~~ 253 (527)
.|+-.|++.||.-.
T Consensus 235 ~~~~~iDe~fe~~~ 248 (249)
T COG4021 235 NVIAQIDELFEGYM 248 (249)
T ss_pred ecceeccchhhhhc
Confidence 67778889998743
No 4
>COG4021 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.5e-77 Score=568.48 Aligned_cols=244 Identities=38% Similarity=0.661 Sum_probs=224.7
Q ss_pred ccCCchhhhhccccCccCCCCeEEEEEeCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHhc-CCeEEEEeecceeeE
Q 009745 268 GKIKPDYVRSFVFENKLIPSTWIVIRIDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVAVLEEF-EDITFAYGVSDEYSF 346 (527)
Q Consensus 268 ~~~kyeyvk~fe~~~~l~p~~~ivvRiDGr~F~kft~~~~f~KP~D~r~~~~M~~~a~~l~~~~-~~~~~aY~~SDEiSf 346 (527)
++|++.||++++.+++++|+++||+|||||+||+||+.|+|+||||+++++||++||+.+|.++ +||++|||+||||||
T Consensus 1 ~k~~~~~~~evya~~R~~P~t~iVlRiDGr~Fhk~tk~l~FeKPyD~~f~~lM~~tA~~lv~~~~~~i~LaYtfSDE~sf 80 (249)
T COG4021 1 AKSKFMYVREVYAHDRILPQTYIVLRIDGRGFHKFTKFLDFEKPYDERFLKLMNATAKNLVLKYGLDIILAYTFSDEISF 80 (249)
T ss_pred CCCcchhhhhhhhhhcCCCCceEEEEecChhhhHHHhhcCcCCcchHHHHHHHHHHHHHHHHHhCCCeEEEEecccceEE
Confidence 4799999999999999999999999999999999999999999999999999999999887776 999999999999999
Q ss_pred EeecCccchhhhhhhHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccceeeeecCChhHHHHHHHHHHHHHHHhhhhhHH
Q 009745 347 VLKNASMFYQRQASEIVSVIVSFFTSMYVVKWKEFFPQKKLNYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINNQYNTC 426 (527)
Q Consensus 347 vf~~~~~~f~rR~~KL~S~~aS~~Ss~~~~~~~~~fp~~~L~~p~~FD~Rvv~~p~~~~v~dYl~WRQ~D~~rN~l~n~~ 426 (527)
|+++++.||+||++||+|++||+|||+|+..|.++||.+ .+|+||||+|.|| .++|.|||.|||.||||||||||+
T Consensus 81 l~~~st~pF~gRveKL~Sv~~Sf~tS~f~r~~~~~~p~~---~~~sFDsR~V~~~-~~~i~dYf~wRQ~eawrN~L~s~t 156 (249)
T COG4021 81 LLKSSTVPFNGRVEKLDSVFASFFTSAFTRLWAKFFPEK---HLPSFDSRCVAYP-LDTIPDYFHWRQVEAWRNNLYSTT 156 (249)
T ss_pred EeecCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCC---CCCcccceEEecc-hhHHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999865 7899999999998 777999999999999999999999
Q ss_pred HHHHHHcCCChHHHhhhccCCchhHHHHHHHHHhCCCCCCcccccccceEEEEeeeeccccccCc---cccceeeeeEEe
Q 009745 427 FWMLVKSGKSKSEAQGCLKGTQAREKNELLIQKFGIDYSKLPLMFRQGSSIFRARTEKSVASENK---SSVEKVWNKVLV 503 (527)
Q Consensus 427 fw~L~~~g~s~~ea~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~~~~~~~~~---~~~~~~r~~v~~ 503 (527)
||+|+-.|++++||+++|+||++.+||||||++||||||.+|+|||||+.+||..+ .+-+|.. ..++|.+..+..
T Consensus 157 fW~L~~rgl~~~ea~erLrG~ks~e~heiLfsefGIN~~r~P~wqkkG~~~yRvp~--r~w~p~~~~es~~~r~~~~~~i 234 (249)
T COG4021 157 FWQLIIRGLTPQEAEERLRGTKSNEKHEILFSEFGINYNREPEWQKKGVGVYRVPV--RGWNPIRDEESLVTRKGEILHI 234 (249)
T ss_pred HHHHHHcCCChHHHHHHhcccccchHHHHHHHHhCCCcCCChHHHhcCceEEEccc--cccCCcchhHHHHHhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999973 2333432 224555666777
Q ss_pred eeccCCCccccccC
Q 009745 504 SHCNIIEPSFWMAH 517 (527)
Q Consensus 504 ~~~dii~d~fW~~~ 517 (527)
+|.-.|++.||.-.
T Consensus 235 ~~~~~iDe~fe~~~ 248 (249)
T COG4021 235 NVIAQIDELFEGYM 248 (249)
T ss_pred ecceeccchhhhhc
Confidence 78888989999754
No 5
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=3.4e-51 Score=374.07 Aligned_cols=131 Identities=50% Similarity=0.967 Sum_probs=108.7
Q ss_pred ccchhhccccccc--cCCCCeEEEEEeCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCeEEEEeccceeEEEe
Q 009745 5 KYEYVKSFEVEDE--IFSPNLLVVRIHGRDFQRFSHDHGFEKPNDERALNLMNTCAVAVLEEYPDIVFSYGYSDEYSFVF 82 (527)
Q Consensus 5 ~~eyvk~fE~~~~--l~p~~~ivVRlDGr~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf 82 (527)
||||||.||.++. |+|++|||||||||+|||||+.|+|+||||+|+|+||++||++||++++|+++||||||||||||
T Consensus 1 k~~~vk~~E~~~~~~l~p~~~ivvRiDG~~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf 80 (135)
T PF04446_consen 1 KYEYVKDFEQDDDLRLLPNTPIVVRIDGRGFHKFTKRHGFEKPNDERFLKAMNEAAKALMEEFPDIVLAYGQSDEISFVF 80 (135)
T ss_dssp -SGGGGGG----B----TTSEEEEEEEETTHHHHHHHTT--SS--HHHHHHHHHHHHHHHHHSSSEEEEEEETTEEEEEE
T ss_pred CccHHHhhccccccccCCCCeEEEEEeCcchhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEcCCeeEEEE
Confidence 7999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcchhhhhhhhHHHHHHHHHHHHHHHHHhhhCCCCCCCCC--CCcceeeeecC
Q 009745 83 KRTSKFYQRRASKILSLIVSFFTSVYVTKWKEFFPLKEFRYP--PSFHSRVISCA 135 (527)
Q Consensus 83 ~~~~~~f~rR~~KL~S~~aS~~Ss~f~~~~~~~fp~~~L~~p--p~FD~Rvv~~P 135 (527)
++.+++|+||++||+|++||+|||+|+++|.++||+++|.+| |+||||+|+||
T Consensus 81 ~~~~~~f~~R~~Kl~S~~aS~~ss~f~~~~~~~~~~~~l~~~~~~~FD~R~v~~P 135 (135)
T PF04446_consen 81 RKSTPLFNRRVEKLVSVVASLFSSSFSFYWSKFFPDTPLEYPHPPSFDARVVCYP 135 (135)
T ss_dssp -TT--TTTTBHHHHHHHHHHHHHHHHHHTHHHH-SSS---S-----EEEEEEEES
T ss_pred CCCChhhcchhhhHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCccEEeCc
Confidence 999989999999999999999999999999999999988766 99999999998
No 6
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=1.5e-50 Score=369.74 Aligned_cols=131 Identities=50% Similarity=0.951 Sum_probs=108.6
Q ss_pred CchhhhhccccCc--cCCCCeEEEEEeCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHhcCCeEEEEeecceeeEEe
Q 009745 271 KPDYVRSFVFENK--LIPSTWIVIRIDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVAVLEEFEDITFAYGVSDEYSFVL 348 (527)
Q Consensus 271 kyeyvk~fe~~~~--l~p~~~ivvRiDGr~F~kft~~~~f~KP~D~r~~~~M~~~a~~l~~~~~~~~~aY~~SDEiSfvf 348 (527)
||||||+||..+. |+|++|||||||||+|||||+.|+|+||||+|+|+||++||++||++++++++||||||||||||
T Consensus 1 k~~~vk~~E~~~~~~l~p~~~ivvRiDG~~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~SDEiSfvf 80 (135)
T PF04446_consen 1 KYEYVKDFEQDDDLRLLPNTPIVVRIDGRGFHKFTKRHGFEKPNDERFLKAMNEAAKALMEEFPDIVLAYGQSDEISFVF 80 (135)
T ss_dssp -SGGGGGG----B----TTSEEEEEEEETTHHHHHHHTT--SS--HHHHHHHHHHHHHHHHHSSSEEEEEEETTEEEEEE
T ss_pred CccHHHhhccccccccCCCCeEEEEEeCcchhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEcCCeeEEEE
Confidence 7999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccchhhhhhhHHHHHHHHHHHHHHHHHhhhCCCCCCCCC--CccceeeeecC
Q 009745 349 KNASMFYQRQASEIVSVIVSFFTSMYVVKWKEFFPQKKLNYP--PSFDGRAVCYP 401 (527)
Q Consensus 349 ~~~~~~f~rR~~KL~S~~aS~~Ss~~~~~~~~~fp~~~L~~p--~~FD~Rvv~~p 401 (527)
++.+.+|+||++||+|++||+|||.|+++|.++||+++|.+| |+||||||+||
T Consensus 81 ~~~~~~f~~R~~Kl~S~~aS~~ss~f~~~~~~~~~~~~l~~~~~~~FD~R~v~~P 135 (135)
T PF04446_consen 81 RKSTPLFNRRVEKLVSVVASLFSSSFSFYWSKFFPDTPLEYPHPPSFDARVVCYP 135 (135)
T ss_dssp -TT--TTTTBHHHHHHHHHHHHHHHHHHTHHHH-SSS---S-----EEEEEEEES
T ss_pred CCCChhhcchhhhHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCccEEeCc
Confidence 999999999999999999999999999999999999988755 99999999998
No 7
>PF14413 Thg1C: Thg1 C terminal domain; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=2.3e-44 Score=323.14 Aligned_cols=119 Identities=46% Similarity=0.857 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhhHHHHhhhhhHHHHHHHHcCCCHHHHHHHhcCCChhHHHHHHHHhhCCCCCCCcccccCCeEEEEee
Q 009745 136 SIEVLQQYLAWRQNDCHVNNQYETCLWMLIKHGKSENEAQEILKGTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTE 215 (527)
Q Consensus 136 s~~~v~dYl~WRQ~D~hrNnl~n~~fw~Lv~~g~s~~eA~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~ 215 (527)
+.++|+|||+|||+|||||||||||||+||++|+|++||+++|+||.++|||||||++||||||++|+||||||+|+|+.
T Consensus 1 ~~~~v~dYl~WRQ~D~hrN~l~~~~fw~Lv~~g~s~~ea~~~L~G~~~~~knElLf~~fGINyn~~P~~~RrGs~i~r~~ 80 (120)
T PF14413_consen 1 SDEEVRDYLSWRQADCHRNNLYNTCFWALVKSGFSPKEAHKRLKGTKSSDKNELLFSRFGINYNNLPAWFRRGSCIYREY 80 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHTT--HHHHHHHHHHCC---GGGS-HHHHH-EEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHHHHhCCChhhCcHHHcCCeEEEEec
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred eeccccccCCCCccceeeee-eeEeeccCcccccccccchhhH
Q 009745 216 MEDIVKYNENGAPVKRLRRK-ARIVHSENIAGKSFWNGHSCLL 257 (527)
Q Consensus 216 ~~~~~~~~~~g~~~~~~r~k-~~~~~~~dii~d~fW~~~~~ll 257 (527)
++.++.+++.+++.|+| .+++.|+|||+|+||++||+||
T Consensus 81 ---~~~~~~~~~~~~~~r~r~~~~~~~~d~i~~~Fw~~~~~~l 120 (120)
T PF14413_consen 81 ---EGYNPKTGEKVTVKRRRDWIIPLHSDIIGDEFWEEHPYLL 120 (120)
T ss_dssp -------SS--SEEEEEEECEEEEEE---SSSHHHHHH-TCCC
T ss_pred ---CCCCccccCcCcceeecccceecccCcccHHHHHhChhcC
Confidence 55666677777777765 3668999999999999999997
No 8
>PF14413 Thg1C: Thg1 C terminal domain; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=100.00 E-value=5e-44 Score=320.98 Aligned_cols=117 Identities=49% Similarity=0.893 Sum_probs=90.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCChHHHhhhccCCchhHHHHHHHHHhCCCCCCcccccccceEEEEee
Q 009745 402 SSDIIRDYLAWRQVDCHINNQYNTCFWMLVKSGKSKSEAQGCLKGTQAREKNELLIQKFGIDYSKLPLMFRQGSSIFRAR 481 (527)
Q Consensus 402 ~~~~v~dYl~WRQ~D~~rN~l~n~~fw~L~~~g~s~~ea~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~ 481 (527)
+.++|+|||+|||+|||||||||||||+||++|+|++||++.|+|+.++|||||||++||||||++|+||||||+|+|+.
T Consensus 1 ~~~~v~dYl~WRQ~D~hrN~l~~~~fw~Lv~~g~s~~ea~~~L~G~~~~~knElLf~~fGINyn~~P~~~RrGs~i~r~~ 80 (120)
T PF14413_consen 1 SDEEVRDYLSWRQADCHRNNLYNTCFWALVKSGFSPKEAHKRLKGTKSSDKNELLFSRFGINYNNLPAWFRRGSCIYREY 80 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHTT--HHHHHHHHHHCC---GGGS-HHHHH-EEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHHHHhCCChhhCcHHHcCCeEEEEec
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred eeccccccCc---cccceeeeeEEeeeccCCCccccccCCCcC
Q 009745 482 TEKSVASENK---SSVEKVWNKVLVSHCNIIEPSFWMAHPSIL 521 (527)
Q Consensus 482 ~~~~~~~~~~---~~~~~~r~~v~~~~~dii~d~fW~~~~~~l 521 (527)
++.+|.+ ..++|.|..+.+.|+|||+|+||++||+||
T Consensus 81 ---~~~~~~~~~~~~~~r~r~~~~~~~~d~i~~~Fw~~~~~~l 120 (120)
T PF14413_consen 81 ---EGYNPKTGEKVTVKRRRDWIIPLHSDIIGDEFWEEHPYLL 120 (120)
T ss_dssp -------SS--SEEEEEEECEEEEEE---SSSHHHHHH-TCCC
T ss_pred ---CCCCccccCcCcceeecccceecccCcccHHHHHhChhcC
Confidence 4444443 335566677999999999999999999997
No 9
>PF07357 DRAT: Dinitrogenase reductase ADP-ribosyltransferase (DRAT); InterPro: IPR009953 This family consists of several bacterial dinitrogenase reductase ADP-ribosyltransferase (DRAT) proteins. Members of this family seem to be specific to Rhodospirillum, Rhodobacter and Azospirillum species. Dinitrogenase reductase ADP-ribosyl transferase (DRAT) carries out the transfer of the ADP-ribose from NAD to the Arg-101 residue of one subunit of the dinitrogenase reductase homodimer, resulting in inactivation of that enzyme. Dinitrogenase reductase-activating glycohydrolase (DRAG) removes the ADP-ribose group attached to dinitrogenase reductase, thus restoring nitrogenase activity. The DRAT-DRAG system negatively regulates nitrogenase activity in response to exogenous NH4+ or energy limitation in the form of a shift to darkness or to anaerobic conditions [].
Probab=23.26 E-value=79 Score=32.85 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCCCccceeeeecCChhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHcCCChHHHhhhccCCchhHHHHHHH
Q 009745 388 NYPPSFDGRAVCYPSSDIIRDYLAWRQVDCHINN--------QYNTCFWMLVKSGKSKSEAQGCLKGTQAREKNELLI 457 (527)
Q Consensus 388 ~~p~~FD~Rvv~~p~~~~v~dYl~WRQ~D~~rN~--------l~n~~fw~L~~~g~s~~ea~~~L~G~~~~dknElLf 457 (527)
+-.|+|..-.+.-...+.-..|+.=|..-.++|| ||.||+|.|++--...+.--..-+|+..-+-|+++-
T Consensus 113 GL~PtfHk~~i~~~~s~a~~~Y~~ekm~~~~~tNaI~~QLDLLYeycQ~~l~rf~~P~~~hltLyRGvn~~~eh~v~~ 190 (262)
T PF07357_consen 113 GLLPTFHKEPIRRFHSEAWARYVEEKMSGRFHTNAIESQLDLLYEYCQWELARFRFPGRRHLTLYRGVNDFDEHEVLE 190 (262)
T ss_pred CcCcccccCcCCCCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHhccCCCCceEEEecCCCchhhhhhhh
Confidence 5579999999887777779999999986555554 688999999972221111123457888888888874
No 10
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=19.28 E-value=76 Score=35.41 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=63.2
Q ss_pred EeCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHhc--CCeEEEEeecceeeEEeecCccchhhhhhhHHHHHH--HH
Q 009745 294 IDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVAVLEEF--EDITFAYGVSDEYSFVLKNASMFYQRQASEIVSVIV--SF 369 (527)
Q Consensus 294 iDGr~F~kft~~~~f~KP~D~r~~~~M~~~a~~l~~~~--~~~~~aY~~SDEiSfvf~~~~~~f~rR~~KL~S~~a--S~ 369 (527)
=||+.|.+=- -++| ||+..++...++-.+|++.. .+..||=-+=||++==|.+.. ++||-|.+- .+
T Consensus 219 ndgkd~e~~p---lle~-ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~------a~elksai~~lt~ 288 (753)
T KOG0464|consen 219 NDGKDFENKP---LLEK-NDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKID------AEELKSAIHELTC 288 (753)
T ss_pred CccccccCCc---cccc-CCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccC------HHHHHHHHHHHhh
Confidence 3777776511 1222 99999999999999999876 445555556666654444431 344444331 11
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCccceeeeecCChhH-HHHHHHHHHHH
Q 009745 370 FTSMYVVKWKEFFPQKKLNYPPSFDGRAVCYPSSDI-IRDYLAWRQVD 416 (527)
Q Consensus 370 ~Ss~~~~~~~~~fp~~~L~~p~~FD~Rvv~~p~~~~-v~dYl~WRQ~D 416 (527)
++......-.....++. --|-.|+=..-+||+|+ -.++|.|-..|
T Consensus 289 aq~a~~i~cgsaiknkg--iqplldavtmylpspeernyeflqwykdd 334 (753)
T KOG0464|consen 289 AQKAAPILCGSAIKNKG--IQPLLDAVTMYLPSPEERNYEFLQWYKDD 334 (753)
T ss_pred hhhhcceehhhhhcccC--ccchhhhhhhccCChhhcchHHHhhhhhh
Confidence 11111111111111233 34778999899999853 35668887655
Done!