Query 009745
Match_columns 527
No_of_seqs 279 out of 630
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 12:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009745.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009745hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a7ia1 g.39.1.3 (A:8-35) Cyst 18.2 13 0.00092 23.2 0.1 11 26-36 16-26 (28)
2 d1owfa_ a.55.1.1 (A:) Integrat 12.1 87 0.0064 23.8 3.8 64 166-236 14-77 (96)
3 d1w25a3 d.58.29.2 (A:294-455) 11.0 1E+02 0.0075 24.2 4.0 59 286-351 27-86 (162)
4 d1p71a_ a.55.1.1 (A:) HU prote 10.8 99 0.0072 23.3 3.7 59 166-231 13-71 (94)
5 d1cuka1 a.5.1.1 (A:156-203) DN 10.7 82 0.0059 21.6 2.7 27 154-180 2-28 (48)
6 d1owfb_ a.55.1.1 (B:) Integrat 10.4 1E+02 0.0074 23.4 3.6 59 167-232 15-73 (94)
7 d2nu7b1 c.23.4.1 (B:239-388) S 10.3 59 0.0043 27.5 2.2 28 267-300 90-117 (150)
8 d1b8ta1 g.39.1.3 (A:1-35) Cyst 10.1 31 0.0023 22.4 0.2 11 26-36 23-33 (35)
9 d1eucb1 c.23.4.1 (B:246-393) S 8.6 53 0.0039 27.8 1.2 30 265-300 88-117 (148)
10 d1mula_ a.55.1.1 (A:) HU prote 8.6 1.2E+02 0.0084 22.8 3.2 60 166-232 13-72 (90)
No 1
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=18.18 E-value=13 Score=23.16 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=9.1
Q ss_pred EEEeCCCcccc
Q 009745 26 VRIHGRDFQRF 36 (527)
Q Consensus 26 VRlDGr~F~kf 36 (527)
|.-|||+|||-
T Consensus 16 vqc~grsfhk~ 26 (28)
T d1a7ia1 16 VQCDGRSFHRC 26 (28)
T ss_dssp EEETTEEEESS
T ss_pred eeecCceeccc
Confidence 67899999983
No 2
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=12.14 E-value=87 Score=23.78 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=43.3
Q ss_pred HcCCCHHHHHHHhcCCChhHHHHHHHHhhCCCCCCCcccccCCeEEEEeeeeccccccCCCCccceeeeee
Q 009745 166 KHGKSENEAQEILKGTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTEMEDIVKYNENGAPVKRLRRKA 236 (527)
Q Consensus 166 ~~g~s~~eA~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~~~~~~~~~g~~~~~~r~k~ 236 (527)
+.|+|.++|...+......=.++ |-+ | +.=.+..-|+.-.+.+-...+.+|.+|+++..-.++.
T Consensus 14 ~~~lsk~~~~~~~~~~~~~i~~~-L~~--g----~~V~l~gfGtF~~~~~~~r~~rNP~Tge~i~ip~~~~ 77 (96)
T d1owfa_ 14 KLGLSKRDAKELVELFFEEIRRA-LEN--G----EQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRV 77 (96)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHH-HHT--T----CCEEETTTEEEEEEEECCEEEECSSSCCEEEECCEEE
T ss_pred HhCCCHHHHHHHHHHHHHHHHHH-Hhc--C----CEEEecCEEEEEEEeccccceeCCCCCCEEEecCcce
Confidence 45899999999886655553333 322 2 3344556788888888788889999999876444443
No 3
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=11.02 E-value=1e+02 Score=24.22 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=38.7
Q ss_pred CCCeEEEEEeCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHhc-CCeEEEEeecceeeEEeecC
Q 009745 286 PSTWIVIRIDGCHFHRFSEVHEFDKPNDEQALNLMNSCAVAVLEEF-EDITFAYGVSDEYSFVLKNA 351 (527)
Q Consensus 286 p~~~ivvRiDGr~F~kft~~~~f~KP~D~r~~~~M~~~a~~l~~~~-~~~~~aY~~SDEiSfvf~~~ 351 (527)
|-.-++++||+ |..+.+.+|.+ ..-.+|...|..+.... ++-.++--.+||+-++++..
T Consensus 27 ~~~l~~i~id~--~~~in~~~G~~-----~~d~ll~~~a~~l~~~~~~~d~~~R~~~~~F~il~~~~ 86 (162)
T d1w25a3 27 PVSALLIDIDF--FKKINDTFGHD-----IGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDT 86 (162)
T ss_dssp CCEEEEEEETT--HHHHHHHSCHH-----HHHHHHHHHHHHHHHTSCTTSEEEECSSSEEEEEETTC
T ss_pred CEEEEEecccc--chhcccccccc-----ccchhhhhhhhhhhhccCCcceeeecCCCeEEEEeecc
Confidence 44567788876 77777655543 22345555566665555 44467777889999988775
No 4
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=10.83 E-value=99 Score=23.35 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=40.4
Q ss_pred HcCCCHHHHHHHhcCCChhHHHHHHHHhhCCCCCCCcccccCCeEEEEeeeeccccccCCCCccce
Q 009745 166 KHGKSENEAQEILKGTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTEMEDIVKYNENGAPVKR 231 (527)
Q Consensus 166 ~~g~s~~eA~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~~~~~~~~~g~~~~~ 231 (527)
+.|+|.++|+..+......=..+ |-+ ++.=....-|+.-.+.+-...+.+|.+|+++..
T Consensus 13 ~~~ls~~~~~~~v~~~~~~i~~~-L~~------~~~V~l~~fG~F~~~~~~~R~grNP~Tge~i~i 71 (94)
T d1p71a_ 13 KASVTKKQADAVLTAALETIIEA-VSS------GDKVTLVGFGSFESRERKAREGRNPKTNEKMEI 71 (94)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHH-HHT------TCCEEETTTEEEEEEEECCEEEECTTTCCEEEE
T ss_pred hhCcCHHHHHHHHHHHHHHHHHH-Hhc------CCEEEEeceEEEEEEecccceeECCCCCCEEEe
Confidence 46899999999875544443332 221 234445667888888887888899999998754
No 5
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.73 E-value=82 Score=21.58 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHcCCCHHHHHHHhcC
Q 009745 154 NNQYETCLWMLIKHGKSENEAQEILKG 180 (527)
Q Consensus 154 Nnl~n~~fw~Lv~~g~s~~eA~~~L~G 180 (527)
|+..+-+.-+|+.-|+++.||.+.+..
T Consensus 2 n~~~~eAi~AL~~LGY~~~ea~~av~~ 28 (48)
T d1cuka1 2 DDAEQEAVARLVALGYKPQEASRMVSK 28 (48)
T ss_dssp CHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455666899999999999998753
No 6
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=10.41 E-value=1e+02 Score=23.41 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=41.8
Q ss_pred cCCCHHHHHHHhcCCChhHHHHHHHHhhCCCCCCCcccccCCeEEEEeeeeccccccCCCCcccee
Q 009745 167 HGKSENEAQEILKGTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTEMEDIVKYNENGAPVKRL 232 (527)
Q Consensus 167 ~g~s~~eA~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~~~~~~~~~g~~~~~~ 232 (527)
.|+|.++|++.+......=.+.|. + ++.=....-|+.-.+.+-...+.+|.+|+.+..-
T Consensus 15 ~~ls~~~~~~~v~~~~~~i~~~L~-~------~~~V~l~gfG~F~~~~~~~R~grNP~Tge~i~ip 73 (94)
T d1owfb_ 15 SHIPAKTVEDAVKEMLEHMASTLA-Q------GERIAIRGFGSFSLHYRAPRTGRNPKTGDKVELE 73 (94)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH-T------TCCEEETTTEEEEEEEECCEEEECTTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-c------CCeEEecceeEEEEeecccccccCCCCCCEEEec
Confidence 368999999988666555444432 2 2334456788998888888899999999976543
No 7
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.28 E-value=59 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=18.8
Q ss_pred hccCCchhhhhccccCccCCCCeEEEEEeCCCcc
Q 009745 267 VGKIKPDYVRSFVFENKLIPSTWIVIRIDGCHFH 300 (527)
Q Consensus 267 ~~~~kyeyvk~fe~~~~l~p~~~ivvRiDGr~F~ 300 (527)
+|+.=-+++++ ..++-|||||+.|-+..
T Consensus 90 vA~GIv~A~k~------~~~~iPiVVRl~Gtn~e 117 (150)
T d2nu7b1 90 IADGIIGAVAE------VGVNVPVVVRLEGNNAE 117 (150)
T ss_dssp HHHHHHHHHHH------HTCCSCEEEEEESTTHH
T ss_pred HHHHHHHHHHh------cCCCCcEEEEecCCCHH
Confidence 33333455665 34678999999998774
No 8
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.14 E-value=31 Score=22.36 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=9.1
Q ss_pred EEEeCCCcccc
Q 009745 26 VRIHGRDFQRF 36 (527)
Q Consensus 26 VRlDGr~F~kf 36 (527)
|.-||++|||-
T Consensus 23 vqc~g~sfhk~ 33 (35)
T d1b8ta1 23 VQCEGSSFHKS 33 (35)
T ss_dssp EEETTEEECTT
T ss_pred eeecCcccccc
Confidence 66799999983
No 9
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.63 E-value=53 Score=27.76 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=20.4
Q ss_pred hhhccCCchhhhhccccCccCCCCeEEEEEeCCCcc
Q 009745 265 EDVGKIKPDYVRSFVFENKLIPSTWIVIRIDGCHFH 300 (527)
Q Consensus 265 e~~~~~kyeyvk~fe~~~~l~p~~~ivvRiDGr~F~ 300 (527)
+.||..=-+++++ +.+.-|||||+.|.+..
T Consensus 88 D~vA~GIv~A~~e------~~~~iPiVVRL~Gtn~e 117 (148)
T d1eucb1 88 AIIANGITKACRE------LELKVPLVVRLEGTNVH 117 (148)
T ss_dssp HHHHHHHHHHHHH------HTCCSCEEEEEESTTHH
T ss_pred HHHHHHHHHHHHh------cCCCccEEEEeccCChH
Confidence 3444334456665 45778999999998765
No 10
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=8.63 E-value=1.2e+02 Score=22.83 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=29.8
Q ss_pred HcCCCHHHHHHHhcCCChhHHHHHHHHhhCCCCCCCcccccCCeEEEEeeeeccccccCCCCcccee
Q 009745 166 KHGKSENEAQEILKGTQKQEKNELLFQQFGVNYKKLPEMFRQGSCVFKTEMEDIVKYNENGAPVKRL 232 (527)
Q Consensus 166 ~~g~s~~eA~~~L~G~~~~dknElLf~~~GINyn~~P~~~rkGs~i~r~~~~~~~~~~~~g~~~~~~ 232 (527)
+.|+|.++|.+.+......=..+ |-+ | +.=.+..-|+.-.+..-+..+.+|.+|+.+..-
T Consensus 13 ~~~ltk~~~~~~v~~~~~~i~~~-L~~--~----~~v~l~gfG~F~~~~~~~R~grNP~Tge~i~ip 72 (90)
T d1mula_ 13 KAELSKTQAKAALESTLAAITES-LKE--G----DAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIA 72 (90)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHH-HHT--T----CCEEETTTEEEEEEEECC--------------C
T ss_pred hhCcCHHHHHHHHHHHHHHHHHH-HHh--C----CCcEecCceEEEEEecCceeeECCCCCCEEEec
Confidence 57899999999886554443322 322 2 333556778888888888888999999877533
Done!