Query 009746
Match_columns 527
No_of_seqs 309 out of 2513
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 16:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00164 bifunctional dihydrof 100.0 6E-137 1E-141 1108.2 48.4 508 10-527 1-514 (514)
2 KOG0673 Thymidylate synthase [ 100.0 6E-105 1E-109 757.1 22.5 287 241-527 7-293 (293)
3 TIGR03284 thym_sym thymidylate 100.0 1.8E-97 4E-102 746.2 24.1 275 245-527 1-296 (296)
4 PRK13821 thyA thymidylate synt 100.0 8.2E-96 2E-100 739.9 24.6 280 244-527 1-323 (323)
5 PRK01827 thyA thymidylate synt 100.0 1.5E-92 3.2E-97 706.0 23.9 264 244-527 1-264 (264)
6 COG0207 ThyA Thymidylate synth 100.0 3.9E-91 8.5E-96 684.8 25.3 264 244-527 3-268 (268)
7 PF00303 Thymidylat_synt: Thym 100.0 5.1E-82 1.1E-86 637.0 19.6 269 244-527 1-269 (269)
8 cd00351 TS_Pyrimidine_HMase Th 100.0 6.1E-66 1.3E-70 504.2 18.6 214 246-480 1-215 (215)
9 PRK00956 thyA thymidylate synt 100.0 9.1E-46 2E-50 359.9 18.3 200 241-484 8-207 (208)
10 TIGR03283 thy_syn_methano thym 100.0 8.4E-44 1.8E-48 343.6 17.1 192 241-478 6-198 (199)
11 KOG1324 Dihydrofolate reductas 100.0 5E-43 1.1E-47 323.9 15.4 180 21-200 1-180 (190)
12 PF00186 DHFR_1: Dihydrofolate 100.0 4.8E-41 1E-45 314.7 17.9 159 23-200 1-161 (161)
13 PRK10769 folA dihydrofolate re 100.0 3E-39 6.5E-44 302.0 17.8 156 24-201 2-159 (159)
14 COG0262 FolA Dihydrofolate red 100.0 4.1E-36 8.8E-41 283.4 19.0 164 23-200 1-166 (167)
15 cd00209 DHFR Dihydrofolate red 100.0 1.1E-30 2.4E-35 244.2 18.8 158 24-199 1-158 (158)
16 PRK00478 scpA segregation and 100.0 9.5E-31 2.1E-35 283.5 17.1 155 24-203 2-156 (505)
17 PF01872 RibD_C: RibD C-termin 99.6 2.2E-15 4.8E-20 145.5 13.3 152 22-183 1-192 (200)
18 PRK05625 5-amino-6-(5-phosphor 99.4 9.6E-12 2.1E-16 122.0 18.2 165 21-201 2-216 (217)
19 TIGR00227 ribD_Cterm riboflavi 99.4 9.1E-12 2E-16 121.8 16.5 139 21-170 2-185 (216)
20 TIGR00326 eubact_ribD riboflav 99.2 2.3E-10 5E-15 120.0 16.4 134 21-165 140-308 (344)
21 PRK14059 hypothetical protein; 99.0 2.1E-08 4.5E-13 100.9 19.7 168 20-201 29-250 (251)
22 TIGR01508 rib_reduct_arch 2,5- 98.9 1.5E-07 3.2E-12 92.2 18.6 137 23-170 2-180 (210)
23 PRK14719 bifunctional RNAse/5- 98.6 2.5E-06 5.3E-11 90.2 19.5 135 21-165 139-316 (360)
24 COG1985 RibD Pyrimidine reduct 98.5 1.1E-05 2.3E-10 79.8 18.0 141 21-171 3-186 (218)
25 PRK10786 ribD bifunctional dia 98.4 7.7E-06 1.7E-10 86.8 15.7 135 21-165 146-328 (367)
26 PLN02807 diaminohydroxyphospho 97.7 0.001 2.2E-08 71.1 15.2 132 20-165 174-346 (380)
27 PHA03370 virion protein US2; P 32.0 1.5E+02 0.0032 30.1 6.7 85 113-198 113-208 (269)
28 PRK00536 speE spermidine synth 27.6 35 0.00076 34.9 1.7 43 129-173 72-118 (262)
29 PF08353 DUF1727: Domain of un 23.5 1.2E+02 0.0027 26.9 4.2 85 24-137 22-108 (113)
No 1
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=6.2e-137 Score=1108.18 Aligned_cols=508 Identities=53% Similarity=0.929 Sum_probs=463.8
Q ss_pred cCCCccCCCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhcc------CCCCCCcEEEEccccccccCCCC
Q 009746 10 SNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT------SDAGKRNAVIMGRKTWESIPLEH 83 (527)
Q Consensus 10 ~~~~~~~~~~~mrki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~------~~p~~~~~vIMGRkTyeslp~~~ 83 (527)
|||+++ ++++++|+|++.+|+||.+|+|||++|+||+||+++|+++ ++|+++++|||||||||++|...
T Consensus 1 ~~~~~~-----~~~i~lIvA~~~n~~IG~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~~~ 75 (514)
T PTZ00164 1 SEDYSS-----LKDFSIVVAVTLKRGIGIGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPKKF 75 (514)
T ss_pred Cccccc-----CCCEEEEEEECCCCCeeCCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhhhc
Confidence 566666 6889999999999999999999999999999999999843 47888999999999999998555
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc
Q 009746 84 RPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI 163 (527)
Q Consensus 84 ~pl~~R~niVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~ 163 (527)
+|||+|.||||||+.... ...+++.+++|+++|++.+++.. +.++||||||++||++||++++||+++||+|+..+
T Consensus 76 rPLp~R~nIVLSr~~~~~-~~~~~v~v~~sl~eal~~lk~~~---~~~dI~VIGG~~Iy~~~L~~~lvDel~LTvI~~~g 151 (514)
T PTZ00164 76 RPLKNRINVVLSRTLTEE-EADPGVLVFGSLEDALRLLAEDL---SIEKIFIIGGASVYREALSANLLDKIYLTRVNSEY 151 (514)
T ss_pred cccCCCeEEEEcCCCCcc-cCCCCEEEeCCHHHHHHHHhccC---CCCcEEEEchHHHHHHHhcCCCCCEEEEEEEEecc
Confidence 899999999999987531 12356889999999999998641 34789999999999999999999999999997777
Q ss_pred ccCccCCCCCCCCceEeeeecCcccCCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChh
Q 009746 164 ECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHE 243 (527)
Q Consensus 164 ~gd~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (527)
+||+|||.++.+.|++++.+....++++.|+|++|+|+..++.+. ..+.....+.++.+.-+....|.++|+.++++|+
T Consensus 152 eGD~~FP~~~~~~~~l~~~s~~~~~~~v~y~f~~y~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T PTZ00164 152 ECDVFFPKIPESFFIVAIVSQTFSTNGTSYDFVIYEKKNDDEEDL-LGKIFGQMKMTGRKKSPKEQLYKACPSLKIREHE 230 (514)
T ss_pred ccCccCCCCCchhcEEEEEEEeccCCCceEEEEEEeccCcchhcc-ccccccccccccccccccccccccCccccccCCc
Confidence 999999999887899887555556788999999999986444333 2222233333443333333668899999999999
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009746 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||+++|++||++|+.+.||||+||+++||++|||||+++||++||||++||++++||||||+|+||+++|++.||+||
T Consensus 231 ~~~Yl~l~~~Il~~G~~~~~rtG~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~~~EllWfl~g~tn~~~l~~~~~~iW 310 (514)
T PTZ00164 231 EFQYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRESFPLLTTKKVFLRGIIEELLWFIRGETNGNLLLDKGVRIW 310 (514)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCceeeecCceEEEeCCCCCceeeechhhHHHHHHHHHHHHhCCccHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccc
Q 009746 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (527)
|+|++++|+++.+++++++|||||+||+|||+||+.|.+|+++|+++++|||++||++||+||+|||+|+++|||.++++
T Consensus 311 d~w~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~i~~~wn~~d~~~ 390 (514)
T PTZ00164 311 EGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKDMHDDYTGQGVDQLKNIIETIKNNPDDRRLILTAWNPSALDQ 390 (514)
T ss_pred CCCcccchhcccccccccCCCcccchhhhhhccccccccccccccCCcccHHHHHHHHHhcCCcchheEEEEECHhHhcc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009746 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
|+|||||+++||+|++|+|+|++||||||+++|+|||+++|++||+|||++||+++|+|+|+++|+|||+||++++++||
T Consensus 391 ~~l~PC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~ya~L~~~iA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 470 (514)
T PTZ00164 391 MALPPCHLLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDALKEQL 470 (514)
T ss_pred cCCCCCceEEEEEEeCCEEEEEEEEehhhhhhcchhhHHHHHHHHHHHHHHhCCEeeEEEEEeccceeehhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009746 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+|+|+++|+|+||+++++|+||+++||+|+||+|||+||+||||
T Consensus 471 ~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~~p~i~~~~av 514 (514)
T PTZ00164 471 ERVPYPFPTLKLKREVENIEDFTIEDIEVIGYVPHPKIKMEMAV 514 (514)
T ss_pred cCCCCCCCeEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999997
No 2
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-105 Score=757.08 Aligned_cols=287 Identities=78% Similarity=1.354 Sum_probs=285.1
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009746 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
++.|.|||++|++||++|..+.||||+||+|+||.||||+|++.||+|||||++|+.+++|||||++|+||++.|.++|+
T Consensus 7 ~~eE~~YL~lv~~Ii~~G~~r~DrtgtgTlSvFg~qmrf~Lr~tfPLLTTKrVfwrgV~EElLwfi~G~t~ak~l~~kgv 86 (293)
T KOG0673|consen 7 NHEEFQYLNLVKHIISNGARRMDRTGTGTLSVFGCQMRFSLRDTFPLLTTKRVFWRGVVEELLWFISGSTDAKVLEEKGV 86 (293)
T ss_pred chhHHHHHHHHHHHHhcCCccCCcCCCceeeeeeeeeeeehhccccchhhhhHHHHHHHHHHHHHHhCCCccchhhhcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccc
Q 009746 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~ 400 (527)
||||+|++|+|||++|+..+++||+||+||+||||||++|.+|+++|.++|+|||..||++||+||++||+|+++|||.|
T Consensus 87 ~IWd~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~d 166 (293)
T KOG0673|consen 87 HIWDGNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPLD 166 (293)
T ss_pred eeecCCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHH
Q 009746 401 LKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (527)
Q Consensus 401 ~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~ 480 (527)
+.+|++||||.++||+|.+|+|+|++||||.||.+|+||||++|++|++|||+.||++||+|+|++|+||||.+|+++++
T Consensus 167 l~~malpPCH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al~ 246 (293)
T KOG0673|consen 167 LGKMALPPCHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDALQ 246 (293)
T ss_pred cccccCCccceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009746 481 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 481 ~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+||.|+|++||+|.|++++++|+||+.+||+|+||+|||+|+|+|||
T Consensus 247 ~Ql~r~PrpFPkl~i~~~~k~id~F~~~df~l~~y~php~I~M~Mav 293 (293)
T KOG0673|consen 247 EQLQRPPRPFPKLKINPEVKDIDDFQAEDFELVGYDPHPKIKMKMAV 293 (293)
T ss_pred HHHhcCCCCCCceeecccccccccccccceeeeccCCCCCccccccC
Confidence 99999999999999999999999999999999999999999999997
No 3
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=100.00 E-value=1.8e-97 Score=746.24 Aligned_cols=275 Identities=54% Similarity=0.943 Sum_probs=265.9
Q ss_pred HHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccccc
Q 009746 245 YLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (527)
Q Consensus 245 ~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd 324 (527)
+|||++|++||++|+.+.||||+||+|+||++|||||+++||++||||++||++++|||||++|+||+++|+++||+|||
T Consensus 1 ~qYl~l~~~Il~~G~~~~drtG~gt~s~fg~~~r~dl~~~fPllTTKk~~~k~~i~ElLWfl~G~tn~~~L~~~~v~IWd 80 (296)
T TIGR03284 1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIWD 80 (296)
T ss_pred ChHHHHHHHHHHhCCcCCCCCCCcccccccceEEEeCCCCcceeeeechhHHHHHHHHHHHHhCCccHHHHHHcCCeecC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhcCC--------CC-------------CCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHh
Q 009746 325 GNASREYLDSVGL--------TD-------------REEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIK 383 (527)
Q Consensus 325 ~~~~~~~~~~~~~--------~~-------------~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk 383 (527)
+|+.++|+++.|+ ++ +++||+|++||+|||+|++. +|+++|||++||++||
T Consensus 81 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpvYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk 152 (296)
T TIGR03284 81 EWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATP--------DGETIDQIKNVIEMIK 152 (296)
T ss_pred CcccccccccccccccccccccccccccccccccccccCCCCccchhhhheeccCC--------CCCchHHHHHHHHHHh
Confidence 9999999998765 11 34799999999999999763 3678999999999999
Q ss_pred cCCCCcceEEEeeCccccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEE
Q 009746 384 NNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFI 463 (527)
Q Consensus 384 ~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~ 463 (527)
+||+|||+|+++|||.++++|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++||+|||++||+++|+|+
T Consensus 153 ~nP~sRR~iv~~wnp~dl~~m~lpPCh~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~~ 232 (296)
T TIGR03284 153 TNPDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEFV 232 (296)
T ss_pred cCCchhheEEEeeChhhhhccCCccceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009746 464 HVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 464 ~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
|+++|+|||+||++++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+||+||||
T Consensus 233 h~igdaHIY~nhi~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~ik~~~av 296 (296)
T TIGR03284 233 HTLGDAHLYSNHLEQAKLQLTREPRPLPKLKLNPEKKDIFDFEYEDIELEGYDPHPAIKAPVAV 296 (296)
T ss_pred EEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 4
>PRK13821 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=8.2e-96 Score=739.92 Aligned_cols=280 Identities=37% Similarity=0.670 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009746 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||++||++||++|..+.||||+||+|+||++|||||++|||+|||||++||++++|||||++|+||++.|+++|++||
T Consensus 1 m~qYldl~~~Il~~G~~~~dRTGtgt~sifg~~~rfdL~~gfPllTTKkv~~ks~i~ELLWfl~G~tn~~~L~~~~v~IW 80 (323)
T PRK13821 1 MKQYLDLVRTILDTGTWQENRTGIRTISIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRASRSAADFRALGCKVW 80 (323)
T ss_pred CHHHHHHHHHHHHhCCcCCCCCCCccccccCceEEEECCCCCceeEeecchHHHHHHHHHHHHhCCCcHHHHHHcCCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccch--hhhhhcCCCCCC-CCCCCCcccccccccccccccccCCCC--------------------C-------CCch
Q 009746 324 DGNASR--EYLDSVGLTDRE-EGDLGPVYGFQWRHFGARYTNMHADYS--------------------G-------QGFD 373 (527)
Q Consensus 324 d~~~~~--~~~~~~~~~~~~-~g~lG~~YG~~wR~~~~~~~~~~~~~~--------------------~-------~~~d 373 (527)
|+|+++ +|+++. +++ +||||++||+|||+|++ +..++.+|+ | +++|
T Consensus 81 d~~~~~~~~~~~~~---~~~~~gdLGpvYG~Qwr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iD 156 (323)
T PRK13821 81 DQNANENAQWLANP---YRQGVDDLGDVYGVQWRQWPG-YKVLDASADAQIADATSRGFRIVARFDEDGAPKVLLYKAID 156 (323)
T ss_pred CCcccccccccccc---ccccCCcccccceeeeeeccc-ccccccccccccccccccccccccccCCCCccccccccChh
Confidence 999875 687652 233 68999999999999987 333333332 3 4689
Q ss_pred HHHHHHHHHhcCCCCcceEEEeeCccccccCCCCCceeEEEEEE--eCCeEEEEEEeecccccccccccHHHHHHHHHHH
Q 009746 374 QLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM--ANGELSCQMYQRSADMGLGVPFNIASYALLTCMI 451 (527)
Q Consensus 374 Ql~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf~v--r~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~i 451 (527)
||++||++||+||+|||+|+++|||.++++|+|||||.++||+| ++|+|+|++||||+|+++|+|||+++||+|++||
T Consensus 157 Qi~~vI~~Lk~nP~sRR~I~~~Wnp~dl~~maLpPCh~~~QF~V~~~~g~L~~~lyQRS~D~~LG~PfNiasyalL~~mi 236 (323)
T PRK13821 157 QLRQCLDTIMNNPGSRRILFHGWNPAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLV 236 (323)
T ss_pred HHHHHHHHHhcCCCccceEEEEeChhHhccccCCcceEEEEEEEecCCCeEEEEEEeccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred HHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCC-----------CCCCcccCCeEEeCCCCCCC
Q 009746 452 AHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK-----------DIDSFVAEDFKLIGYDPHQK 520 (527)
Q Consensus 452 A~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~~~-----------~~~d~~~~df~l~~Y~~~~~ 520 (527)
|++||+++|+|+|+++|+|||+||++++++||+|+|+++|+|+|+++++ +|+||++|||+|+||+|||+
T Consensus 237 A~~~gl~~G~~ih~igdaHIY~nhi~~v~eqL~R~P~~~P~l~i~~~~~~~~~~~~~~~~~i~d~~~dDf~l~~Y~~hp~ 316 (323)
T PRK13821 237 GRLTGYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVISDRVPEYAKTGVYEPEWLEKIEPSDFSLVGYRHHEP 316 (323)
T ss_pred HHHhCCEeeeEEEEEEEEEEeHhHHHHHHHHhcCCCCCCCEEEECCCcccccccccccccchhcCCHhHeEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999999998754 67899999999999999999
Q ss_pred CCccccC
Q 009746 521 IEMKMAV 527 (527)
Q Consensus 521 i~~~~av 527 (527)
||+||||
T Consensus 317 Ik~~~av 323 (323)
T PRK13821 317 LTAPMAV 323 (323)
T ss_pred ccccccC
Confidence 9999997
No 5
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=100.00 E-value=1.5e-92 Score=706.04 Aligned_cols=264 Identities=57% Similarity=1.005 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009746 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||+++|++||++|+.+.||||++|+++||+++||||+++||++||||++||++++||+|||+|++|+++|+++|++||
T Consensus 1 m~~Yl~l~~~Il~~G~~~~drTg~~t~~i~g~~~r~dl~~~fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
T PRK01827 1 MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKGFPLLTTKKVHFKSIIHELLWFLRGDTNIAYLQENGVHIW 80 (264)
T ss_pred ChHHHHHHHHHHHhCCCCCCCCCCceEEeccceEEEECCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCCChh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccc
Q 009746 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (527)
|+|+ +++||+|++||+|||+|++. +++++|||++||++||+||+|||+|+++|||.++++
T Consensus 81 d~~~------------~~~g~lg~~YG~q~r~~~~~--------~g~~~DQl~~vI~~Lk~np~sRR~ii~~wnp~dl~~ 140 (264)
T PRK01827 81 DEWA------------DENGDLGPVYGKQWRSWPTP--------DGRHIDQISKVIEQLKTNPDSRRLIVSAWNPGELDK 140 (264)
T ss_pred hhcc------------ccCCccCCcchHHHhcCcCC--------CCchHHHHHHHHHHHhcCCCchhheeeeeCHhHhhc
Confidence 9995 46899999999999999752 367799999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009746 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
|+|+|||.++||+|++|+|+|++||||||+++|+|||+++|++||+|||+.||+++|+|+|+++|+|||++|++++++||
T Consensus 141 ~~l~PC~~~~qf~V~~g~L~~~~~qRS~D~~lG~p~Ni~~y~~L~~~vA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 220 (264)
T PRK01827 141 MALPPCHALFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQL 220 (264)
T ss_pred ccCCceEEEEEEEEeCCEEEEEEEEehhhhhccccchHHHHHHHHHHHHHHcCCeeEEEEEEEeeEEEEhhHhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009746 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+|+|+++|+|+||+++++|+||++|||+|+||+|||+||+||||
T Consensus 221 ~r~p~~~P~l~i~~~~~~~~~~~~~Df~l~~Y~~~p~ik~~~av 264 (264)
T PRK01827 221 SREPRPLPKLVINPDIKSIFDFEFEDFELEGYDPHPAIKAPVAV 264 (264)
T ss_pred cCCCCCCCEEEECCCCCCcccCCHhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999997
No 6
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.9e-91 Score=684.79 Aligned_cols=264 Identities=55% Similarity=1.015 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCC-CCcccccccccccchHhHHHHHHhCCCChhHhhhcCccc
Q 009746 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~-~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (527)
|+||++++++|+++|..+.||||++|+|+||++||||+++ +||++|||+++||++++||+||++|.+|++.|+++|++|
T Consensus 3 ~~~yl~l~~~ile~G~~~~drt~~~t~sv~g~q~~~Dl~~~~fpllttk~v~~ks~i~Ellwf~~g~tn~~~l~~~gv~i 82 (268)
T COG0207 3 MKQYLDLIEHILENGTSRSDRTGTGTLSVFGYQMRFDLSKSEFPLLTTKKVHLKSIIHELLWFLRGDTNIAYLKENGVKI 82 (268)
T ss_pred hhHHHHHHHHHHHcCcccccccccceEEEeccEEEEecccCCCceeEeeeeehhhhhHhhhhhhcCCchHHHHHhcCccc
Confidence 8999999999999997788999999999999999999999 699999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcCCCCCCC-CCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccc
Q 009746 323 WDGNASREYLDSVGLTDREE-GDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDL 401 (527)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~-g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~ 401 (527)
||+|+ .++ ||+|++||+|||+|... +|+++|||.+||++||+||+|||+|+++|||.++
T Consensus 83 Wdew~------------~e~~Gdlg~vYg~q~r~~~~~--------~g~~iDQi~~vIe~Lk~np~sRR~ivs~WnP~e~ 142 (268)
T COG0207 83 WDEWA------------DENYGDLGPVYGYQWRKWLRP--------DGEKIDQIDKVIEQLKENPDSRRAIVSAWNPGEL 142 (268)
T ss_pred ccccc------------ccccCcccceeeEeeeeccCc--------CCCccHHHHHHHHHHhcCCcccceEEEecCcccc
Confidence 99998 455 99999999999999853 4788999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHH
Q 009746 402 KLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481 (527)
Q Consensus 402 ~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~ 481 (527)
.+|+|||||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|||||+||+|++++
T Consensus 143 ~~m~l~PC~~l~qF~V~~gkL~~~lyqRS~Di~lg~pfNi~syalL~~mvA~~~Gle~G~f~h~~~daHIY~nh~e~~~~ 222 (268)
T COG0207 143 DEMALPPCHILFQFYVRDGKLSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKE 222 (268)
T ss_pred ccccCCCcEEEEEEEEECCEEEEEEEEecccccccccHHHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEEhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009746 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 482 ~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
||+|+|+++|+|+||++.++++||++|||+|+||+|||+||+||||
T Consensus 223 ql~R~p~~~pkl~in~~~~~~f~~~~~Df~l~~Y~~~~~ik~~~av 268 (268)
T COG0207 223 QLKREPRPLPKLVINPKDKDLFDFTFEDFELVGYDPHPAIKAPVAV 268 (268)
T ss_pred HhccCCCCCCeEEecCCccccccccccceEEECCCCCccccccccC
Confidence 9999999999999999778889999999999999999999999997
No 7
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=100.00 E-value=5.1e-82 Score=637.00 Aligned_cols=269 Identities=56% Similarity=0.989 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009746 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|++|+++|++|+++|+.+.+|||++|+++||++++||++++||++|+|+++|+++++|++||++|++|+++|+++|++||
T Consensus 1 ~~~Y~~l~~~Il~~G~~~~~rtg~~t~~~~~~~~~~d~~~~~p~lt~k~~~~~~~~~EllW~l~Gs~d~~~l~~~~~~iw 80 (269)
T PF00303_consen 1 EKQYLDLLKKILENGEFREDRTGVGTKELFGVQLRIDPRKRFPLLTTKKVNWKSAIAELLWYLSGSNDVDFLREYGPKIW 80 (269)
T ss_dssp HHHHHHHHHHHHHHTEEEESTTSSEEEEEEEEEEEEECGGS-SSSSSST-HHHHHHHHHHHHHTT-SBHHHHHTTT-HTT
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCcEEEECcceEEEcCCCCCccccccccccchhHHHHHHHHHcCccHHHHHhhccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccc
Q 009746 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (527)
+.|+.++| ++|++|++||+|||+|++.+ +| +.++|||++||++||++|+|||+++++|||.++++
T Consensus 81 d~~~~~~~---------~~g~~g~~YG~~~r~~~~~~-----~~-~~~~dQl~~vi~~Lk~~p~sRR~vi~~w~p~~~~~ 145 (269)
T PF00303_consen 81 DFWADKDY---------EEGDLGPAYGPRWRHWGAPY-----DY-GFGFDQLEWVIEKLKNNPDSRRAVISIWNPSDDDE 145 (269)
T ss_dssp HGGHSHHH---------HTTB-SSSHHHHHHHBTSTE-----TT-TSSBEHHHHHHHHHHHSTTSSTEEEEC--TTTGGG
T ss_pred cccccccc---------ccCcccCCCCceeeeccccc-----cC-CccHHHHHHHHHHHhcCCCchhheeeeCCHhHhcC
Confidence 99986543 36999999999999998753 34 68899999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009746 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
++++|||..+||+||+|+|+|+++|||||+++|+|+|+++|++||++||++||+++|+|+|+++|+|||++|+++|++||
T Consensus 146 ~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~~~l 225 (269)
T PF00303_consen 146 MADPPCHQSIQFYVRDGKLNLTVYQRSNDAFLGLPFNIFQYALLQEMIARELGLKPGTYTHFIGSAHIYENHIDAAKEQL 225 (269)
T ss_dssp SSS--SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCceeeeEEEEECCEEEEEEEeecchhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEcccEeeHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009746 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+|+|+++|+|++++++++|+||+++||+|+||+|||+|||||||
T Consensus 226 ~~~~~~~p~l~~~~~~~~~~~~~~~d~~l~~Y~~~~~i~~~~av 269 (269)
T PF00303_consen 226 KREPYPFPKLEINPEKKSIDDFKPEDFKLEGYQPHPKIKFEMAV 269 (269)
T ss_dssp TS---S--EEEESSTHSSGGGH-GGGEEEES---SS--SSSSTE
T ss_pred hcCCCCCCEEEeCCCCCChhhCchhhEEEeCCCCCCCCCccccC
Confidence 99999999999999999999999999999999999999999997
No 8
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=100.00 E-value=6.1e-66 Score=504.20 Aligned_cols=214 Identities=62% Similarity=1.083 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHcCccc-cCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccccc
Q 009746 246 LYLRLVQDIISDGNLK-DDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (527)
Q Consensus 246 ~Yl~l~~~Il~~G~~~-~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd 324 (527)
+|++++++||++|..+ .+|||++|+++||++++||++++||++|+||++|+++++|++||++|++|+++|++++++||+
T Consensus 1 ~y~~~~~~il~~g~~~~~~Rtg~~t~~~~g~~~~~~~~~~~p~~t~k~~~~~~~i~Ellw~l~G~~~~~~l~~~~~~iw~ 80 (215)
T cd00351 1 QYLDLWRKILEEGYRKTDDRTGTGTRSLFGAQLRFDLSEGFPLLTTKKVPWKSAIEELLWFLRGDTNAERLKEYGVSIWD 80 (215)
T ss_pred CHHHHHHHHHHhCCeecCCCCCCceEEEeeeEEEEECccCccccccCCCCchhhhhhhhhhhcCCccHHHHHHhCccccc
Confidence 5999999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccccC
Q 009746 325 GNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLM 404 (527)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~ 404 (527)
+|+ .++|++|++||.|||+|++. ++++|||++||++||++|+|||+++++|||.++.++
T Consensus 81 ~~~------------~~~g~~g~~YG~r~r~~~~~---------~~~~dQi~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~ 139 (215)
T cd00351 81 EWA------------SKEGDLGYTYGFQWRHWGAP---------GQGVDQIEKVIEKLKNNPDSRRAIISAWNPADLDLM 139 (215)
T ss_pred ccc------------ccCCCCCCChhhheeecCCC---------CCChHHHHHHHHHHhcCCCchheEEEecChhhcccc
Confidence 997 34689999999999999752 567999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHH
Q 009746 405 ALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (527)
Q Consensus 405 ~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~ 480 (527)
++||||..+||+|++|+|+|+++|||||+++|+|+|+++|++||+|||++||+++|+|+|+++|+|||++|+++|+
T Consensus 140 ~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~~~N~~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~ 215 (215)
T cd00351 140 ALPPCHTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASYALLTEMIARVTGLEPGEFIHTIGDAHIYENHLEQVK 215 (215)
T ss_pred CCCCceEEEEEEEeCCEEEEEEEehhhhhhhhhhhhHHHHHHHHHHHHHhcCCEeEEEEEEEEEEEEehhhHhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
No 9
>PRK00956 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=9.1e-46 Score=359.88 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=173.0
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009746 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
....+.|.+++++|+++|..+.+..|..++++.+..+..+. |..- +++- .
T Consensus 8 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~----P~~~--~i~~------------------------~ 57 (208)
T PRK00956 8 KSVASAWERLVPKIMNEGEEITDERGSKTKEIMNTIIEITN----PKLK--SIPE------------------------K 57 (208)
T ss_pred CCHHHHHHHHHHHHHhCCcEeeCCCCceEEEEeceEEEEcC----CccC--CCCC------------------------C
Confidence 56789999999999999999998889889999999988852 2221 1111 1
Q ss_pred ccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccc
Q 009746 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~ 400 (527)
.-|+.|+.++|.+.+ + ..+.+.+|++||.|||+|++ ..|||++||++|+++|+|||+++++|||.+
T Consensus 58 ~~~~~~~~~~y~~~~-~-~g~~~~~~~~YG~r~r~~~~------------~~dQi~~vI~~L~~~p~sRR~i~~~w~p~~ 123 (208)
T PRK00956 58 YPLGEEALEEYTKQL-L-SGSAQGFVYTYGERLREYPG------------EVDQIDYIIEKLKENKNSRRATAVTWNPYI 123 (208)
T ss_pred CCcchHHHHHHHHhc-c-CCccCccCCCHHHHHhcCCC------------hhHHHHHHHHHHhcCCCchheEEEEeCchh
Confidence 235555556666543 2 12345599999999999963 259999999999999999999999999999
Q ss_pred cccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHH
Q 009746 401 LKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (527)
Q Consensus 401 ~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~ 480 (527)
+.+++++|||..+||.|++|+|+|+++|||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|+++|+
T Consensus 124 d~~~~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~v~ 203 (208)
T PRK00956 124 DTKVDEVPCLQLVDFLIRDGKLYLTVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVSAHIYERDWDYLE 203 (208)
T ss_pred hhhcCCCCCeEEEEEEEeCCEEEEEEEEhhhhhhcccchHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 009746 481 EQLQ 484 (527)
Q Consensus 481 ~~l~ 484 (527)
++|+
T Consensus 204 ~~l~ 207 (208)
T PRK00956 204 KIFK 207 (208)
T ss_pred HHhc
Confidence 9986
No 10
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=100.00 E-value=8.4e-44 Score=343.58 Aligned_cols=192 Identities=22% Similarity=0.346 Sum_probs=161.5
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEe-CCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009746 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYN-LRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~d-l~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
....+.|.+++++|+++|..++++.|..++++.|..+.+. ++.+ +++-. ..| + .+.|.
T Consensus 6 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-------~~~~~-----~~~---~---~~~l~--- 64 (199)
T TIGR03283 6 RSIAQAWRELVTKIMVEGEVVEDERGSLTKEVRNLIIHIENPGPE-------KIPEG-----YPL---D---EEKLE--- 64 (199)
T ss_pred CCHHHHHHHHHHHHHhCCeEeeCCCCceEEEEeceEEEEcCCccc-------CcCcc-----Ccc---c---HHHHH---
Confidence 4678999999999999999999988999999999998885 3333 11111 111 1 11222
Q ss_pred cccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 009746 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (527)
+|.+.+ +. .++..++.+||.|||.|. ++|||++||++||++|+|||+++++|||.
T Consensus 65 ----------~Y~~~l-l~-~~~~~~~y~YG~r~r~~~-------------g~dQl~~vI~~Lk~~p~sRR~i~~~w~p~ 119 (199)
T TIGR03283 65 ----------EYEKQL-LD-PERQGFVYTYGNRLRRYF-------------GIDQIDYIIERLNQSPNSRRAIAITWDPP 119 (199)
T ss_pred ----------HHHHHH-cC-CCcCCCCcCHHHHHHcCC-------------ChhHHHHHHHHHhcCCCccceeEEEECcc
Confidence 222222 11 233448999999999984 48999999999999999999999999999
Q ss_pred ccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhh
Q 009746 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 478 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~ 478 (527)
++.+++++|||..+||.|++|+|+|+++|||||+++|+|+|+++|++||++||++||+++|+|+|+++|+|||++|++.
T Consensus 120 ~d~~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIYe~d~~~ 198 (199)
T TIGR03283 120 QDIKVDEVPCLQLVQFLIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVEPGTLTTHAISAHIYERDFDE 198 (199)
T ss_pred hhcccCCCCCcEEEEEEEeCCEEEEEEEEhhhhhhchhhhHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEecccccc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999985
No 11
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5e-43 Score=323.86 Aligned_cols=180 Identities=56% Similarity=0.944 Sum_probs=156.9
Q ss_pred CceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009746 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~ 100 (527)
|+.+.++||++.+++||++|+|||++|.||+||+++|+++++|+|.|+||||||||||+|.+++||++|.||||||+...
T Consensus 1 ~~~~~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~ 80 (190)
T KOG1324|consen 1 MRLLNLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKE 80 (190)
T ss_pred CceeEEEEEEccccCcccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcccCCCCCceEEEEecccCc
Confidence 57899999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred CCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEe
Q 009746 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180 (527)
Q Consensus 101 ~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~ 180 (527)
+....++++++.+++.|+..|.+.++..+.+.||||||+++|+++|++++||++++|+|...++||+|||.+|.+.++.+
T Consensus 81 ~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~ 160 (190)
T KOG1324|consen 81 DFAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKW 160 (190)
T ss_pred CcCCccCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEEEEecccCCcccccccCChHHhchh
Confidence 43345679999999999999998887778899999999999999999999999999999999999999999988766654
Q ss_pred eeecCcccCCccEEEEEEEE
Q 009746 181 YSSFPIVENNIRYCLSTYVR 200 (527)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r 200 (527)
.......+++.++.+..+-|
T Consensus 161 ~~~~pv~~~~~~~~~e~~lk 180 (190)
T KOG1324|consen 161 DKLFPVSENGLRVQEETFLK 180 (190)
T ss_pred hhcCcccccccchhhhcCcc
Confidence 33222234444444444443
No 12
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=100.00 E-value=4.8e-41 Score=314.75 Aligned_cols=159 Identities=48% Similarity=0.804 Sum_probs=143.9
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009746 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~ 102 (527)
+|++|+|++.||+||.+|+|||++|+||+||+++|+ +++||||||||||+| .+|||+|.||||||+...
T Consensus 1 mi~lI~A~~~n~~IG~~~~lPW~~p~Dl~~Fk~~T~-------~~~vIMGrkT~eslp--~~pLp~R~niVlSr~~~~-- 69 (161)
T PF00186_consen 1 MISLIVAVDKNGGIGKDGKLPWHLPEDLKFFKKLTT-------GNPVIMGRKTFESLP--FRPLPGRINIVLSRNPDY-- 69 (161)
T ss_dssp -EEEEEEEETTSEEEBTTBSSSSSHHHHHHHHHHHT-------TCEEEEEHHHHHHST--GSSBTTSEEEEESSSTTS--
T ss_pred CEEEEEEECCCCcccCCCccccccHHHHHHHHHccC-------CccEEEeeCchhcCC--ccCCCCCeEEEEEcCccc--
Confidence 489999999999999999999999999999999998 899999999999998 369999999999999864
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeee
Q 009746 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|+++|++.++.. .++||||||++||+++| ++||++|||+|+..++||+|||.++.+.|++++.
T Consensus 70 -~~~~~~~~~s~~~al~~~~~~-----~~~i~ViGG~~iy~~~l--~~~d~l~lT~I~~~~~~D~~fP~~d~~~~~~~~~ 141 (161)
T PF00186_consen 70 -EPEGVEVVSSLEEALELAKDK-----DEEIFVIGGAEIYEQFL--PYADRLYLTRIDGDFEGDTFFPEIDESEFKLVSE 141 (161)
T ss_dssp -CTTTSEEESSHHHHHHHHTTS-----ESEEEEEE-HHHHHHHH--HGESEEEEEEESSESTTSEECSSCCTTTEEEEEE
T ss_pred -ccCCceeeCCHHHHHHHhhcc-----CCcEEEECCHHHHHHHH--HhCCeEEEEEEcCccccceECCCCChHHCEEEEE
Confidence 335788999999999966543 47999999999999999 7999999999999999999999999899999987
Q ss_pred ecCc--ccCCccEEEEEEEE
Q 009746 183 SFPI--VENNIRYCLSTYVR 200 (527)
Q Consensus 183 ~~~~--~e~~~~~~f~~Y~r 200 (527)
+... +++++.|+|++|+|
T Consensus 142 ~~~~~~~~~~~~~~f~~y~R 161 (161)
T PF00186_consen 142 EEHPKDEENGIKYTFVTYER 161 (161)
T ss_dssp EEEEHBEETTSEEEEEEEEE
T ss_pred EecccCCCCCCCEEEEEEEC
Confidence 6544 67999999999997
No 13
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=3e-39 Score=302.02 Aligned_cols=156 Identities=35% Similarity=0.662 Sum_probs=139.6
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009746 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~ 103 (527)
|++|+|++.||+||++|+|||++|+||+||+++|+ +++|||||||||+++ +|||+|+|||+||+..
T Consensus 2 i~~I~A~~~~~~IG~~~~lPW~~~~D~~~Fk~~T~-------~~~vIMGRkTyes~~---~plp~r~~iVlSr~~~---- 67 (159)
T PRK10769 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIVISSQPG---- 67 (159)
T ss_pred EEEEEEECCCCcEecCCCcCcCCHHHHHHHHHHhC-------CCeEEEeHHHHHhhh---hhcCCCcEEEECCCCC----
Confidence 78999999999999999999999999999999998 899999999999997 6999999999999863
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeeee
Q 009746 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~~ 183 (527)
..+++.++++++++++.++. .++|||+||+++|+++| ++||+++||+||..++||+|||.++.+.|++++++
T Consensus 68 ~~~~v~~~~~l~~~l~~~~~------~~~I~viGG~~iy~~~l--~~~Del~lT~i~~~~~gD~~fP~~~~~~~~~~~~~ 139 (159)
T PRK10769 68 TDDRVTWVKSVDEALAAAGD------VPEIMVIGGGRVYEQFL--PKAQRLYLTHIDAEVEGDTHFPDYEPDEWESVFSE 139 (159)
T ss_pred CCCCEEEECCHHHHHHHhcC------CCCEEEECcHHHHHHHH--HHCCEEEEEEECccccCCEECCCCChHHCEEEEEE
Confidence 24578888899999996653 36899999999999999 66999999999999999999999988889998655
Q ss_pred cC--cccCCccEEEEEEEEc
Q 009746 184 FP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (527)
.. +++|++.|.|.+|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T PRK10769 140 FHDADEQNSHSYCFEILERR 159 (159)
T ss_pred eccccCCCCccEEEEEEEeC
Confidence 43 3578889999999983
No 14
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-36 Score=283.37 Aligned_cols=164 Identities=40% Similarity=0.590 Sum_probs=145.0
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009746 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~ 102 (527)
+|++|+|+|+||+||.+|+|||++|+|++||+++|. ++.|||||||||+++...+||++|.|||+||+...
T Consensus 1 ~i~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~-------~~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~-- 71 (167)
T COG0262 1 MIILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTL-------GKPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDL-- 71 (167)
T ss_pred CEEEEEEEcCCCeeecCCCCCCCChhHHHHHHHhhC-------CCCEEEccchhhhccccCCCCCCCeEEEEecCccc--
Confidence 489999999999999999999999999999999998 67799999999999965569999999999999533
Q ss_pred CCCCC-EEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc-ccCccCCCCCCCCceEe
Q 009746 103 ATVEN-VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDSSVFQPW 180 (527)
Q Consensus 103 ~~~~~-~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~-~gd~fFP~~~~~~f~l~ 180 (527)
..++ +.+++|+++|+..++.. .+++|||+||+++|++||+++++|+++||++|+.+ +||+|||..+...|+++
T Consensus 72 -~~e~~~~v~~s~~~al~~~~~~----~~~~i~IiGG~~l~~~~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~ 146 (167)
T COG0262 72 -KTEGGVEVVDSIEEALLLLLKE----EGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELV 146 (167)
T ss_pred -ccCCCEEEeCCHHHHHHHHhhc----CCCeEEEEcCHHHHHHHhccccccEEEEEEeeeeccCCCccCCCCCccceEEe
Confidence 4556 99999999999999875 26899999999999999988899999999999999 99999999777889998
Q ss_pred eeecCcccCCccEEEEEEEE
Q 009746 181 YSSFPIVENNIRYCLSTYVR 200 (527)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r 200 (527)
..+.....+.+.+.|..|+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~ 166 (167)
T COG0262 147 SSEDADEKGGYFYTFESYER 166 (167)
T ss_pred eeeecccCCceeEEEEEeec
Confidence 77533456667778877775
No 15
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.97 E-value=1.1e-30 Score=244.20 Aligned_cols=158 Identities=45% Similarity=0.720 Sum_probs=135.7
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009746 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~ 103 (527)
|++++|+|+||+||.++++||++++|+++|++.+. ++++||||+|||+++. +|+|+|.++|+||++.. .
T Consensus 1 i~~~~a~sldG~i~~~~~~~W~~~~d~~~f~~~~~-------~~~ivmGR~Tye~~~~--~~~~~~~~~V~S~~~~~--~ 69 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTT-------GNPVIMGRKTFESIPR--RPLPGRTNIVLSRQLDY--Q 69 (158)
T ss_pred CEEEEEECCCCceeCCCCcCcCCHHHHHHHHHHHC-------CCeEEEChhhHhhCCC--cCCCCCCEEEEccCCCc--C
Confidence 57999999999999977799999999999999886 7999999999999984 68999999999999854 2
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeeee
Q 009746 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~~ 183 (527)
.++++.++.+++++++.++ . .+++|||+||+++|++||++ +||++|+++|..++|+++||..+...|++++.+
T Consensus 70 ~~~~~~~~~~~~~~v~~lk-~----~~~~I~v~GG~~l~~~~l~~--iDe~~l~v~pv~~~G~~~f~~~~~~~l~l~~~~ 142 (158)
T cd00209 70 DAEGVEVVHSLEEALELAE-N----TVEEIFVIGGAEIYKQALPY--ADRLYLTRIHAEFEGDTFFPEIDESEWELVSEE 142 (158)
T ss_pred CCCCeEEECCHHHHHHHHh-c----CCCeEEEECcHHHHHHHHhh--CCEEEEEEECCcccCCEECCCCCchhcEEEEEE
Confidence 3567888889999999998 3 25799999999999999966 999999999999999999998765679998733
Q ss_pred cCcccCCccEEEEEEE
Q 009746 184 FPIVENNIRYCLSTYV 199 (527)
Q Consensus 184 ~~~~e~~~~~~f~~Y~ 199 (527)
....+++.+|.|.+|.
T Consensus 143 ~~~~~~~~~~~~~~~~ 158 (158)
T cd00209 143 EVFEEDGYSYTFETYE 158 (158)
T ss_pred eecccCCccEEEEEEC
Confidence 3334455788988873
No 16
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=99.97 E-value=9.5e-31 Score=283.47 Aligned_cols=155 Identities=17% Similarity=0.438 Sum_probs=132.3
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009746 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~ 103 (527)
|++|||++.+|+||++|.|||++|+||+||+++|+ +++||||||||||++ .|||+|+|||+||+......
T Consensus 2 i~lI~A~~~n~~IG~~~~LPW~~peDl~~Fk~~T~-------~~tVVMGRkTyEsi~---~~Lp~R~niVlSr~~~~~~~ 71 (505)
T PRK00478 2 IKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTT-------NHTIVMGYNTFQAMN---KILANQANIVISKKHQRELK 71 (505)
T ss_pred EEEEEEECCCCcccCCCCCCCCCHHHHHHHHHHhC-------CCeEEEehHHHHhhh---hcCCCCeEEEECCCCccccC
Confidence 88999999999999999999999999999999998 899999999999998 58999999999998743111
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeeee
Q 009746 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~~ 183 (527)
..+++.+++|++++++... +++||||||++||++|+ ++||+++||+||+.++||+|| .++...|+++...
T Consensus 72 ~~~~v~v~~sl~~~L~~~~-------~~dI~IIGG~~Ly~~~l--~~vDel~lT~Ip~~~g~d~~f-~~~~~~~~Lv~~~ 141 (505)
T PRK00478 72 NNNELFVFNDLKKLLIDFS-------NVDLFIIGGKKTIEQFI--KYADQLIISKLNADYKCDLFV-NLNYDDFSLVQTK 141 (505)
T ss_pred CCCCeEEECCHHHHHHhCC-------CCCEEEEChHHHHHHHH--HhCCEEEEEEeccccCCCCCC-CCChhhheeeeeE
Confidence 2357888999999976431 35899999999999999 679999999999999999998 4556689887654
Q ss_pred cCcccCCccEEEEEEEEccc
Q 009746 184 FPIVENNIRYCLSTYVRVRS 203 (527)
Q Consensus 184 ~~~~e~~~~~~f~~Y~r~~~ 203 (527)
. ..+|.+++|.|+.+
T Consensus 142 ~-----~~~~v~~~Y~rk~~ 156 (505)
T PRK00478 142 E-----YDQFVVEYWEKKPN 156 (505)
T ss_pred E-----cCcEEEEEEEecCC
Confidence 2 22489999999844
No 17
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.63 E-value=2.2e-15 Score=145.47 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=111.8
Q ss_pred ceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccccCC----CCCCC---------
Q 009746 22 RSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL----EHRPL--------- 86 (527)
Q Consensus 22 rki~livAvs~dG~IG~-~g~lpW~~-p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~----~~~pl--------- 86 (527)
|++++.+|+|+||+|+. +++..|.. +++..++.++... .+++||||+|++.... ...+.
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~------~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~ 74 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSE------ADAILVGRNTVRADNPSLTVRWPGDPPPRERGRA 74 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHH------CSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCH
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhh------CCEEEeccchhhhcCccccccCccccchhhhhhc
Confidence 58999999999999976 88899974 4566777766642 7899999999986532 11111
Q ss_pred CCCcEEEEcCCCCCCCC----C-CCC-EEEECC---------------HHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHH
Q 009746 87 PGRLNVVLTRSGSFDIA----T-VEN-VVICGS---------------IGSALELLAASPYCLSIEKVFVIGGGQILSEA 145 (527)
Q Consensus 87 ~~R~niVlSrt~~~~~~----~-~~~-~~v~~s---------------l~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~ 145 (527)
+..+.||+|++...... . ... .++++. +.++++.|++. +.++|+|.||+++..+|
T Consensus 75 ~~p~~vV~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~----g~~~i~v~GG~~l~~~~ 150 (200)
T PF01872_consen 75 KQPPKVVVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLRVRVDLEEALRRLKER----GGKDILVEGGGSLNGSF 150 (200)
T ss_dssp SSSEEEEEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT----TTSEEEEEEHHHHHHHH
T ss_pred cCCeEEEEecccccccccccccCCCceEEEeecccccccccceEEecCHHHHHHHHHhc----CCCEEEEechHHHHHHH
Confidence 45679999999863110 0 112 233333 99999999987 47999999999999999
Q ss_pred hcCCCcCEEEEEEECccc-c-cCccCCCCCCC--CceEeeee
Q 009746 146 LNAPECDAIHITEIETRI-E-CDTFIPSIDSS--VFQPWYSS 183 (527)
Q Consensus 146 L~~~lvDel~lT~I~~~~-~-gd~fFP~~~~~--~f~l~~~~ 183 (527)
|++++|||++|++.|..+ . |.++|+..... +|++++.+
T Consensus 151 l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~~~l~l~~~~ 192 (200)
T PF01872_consen 151 LRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRSLRLELVSVR 192 (200)
T ss_dssp HHTT--SEEEEEEESEE-SSTSEESSTSSTSSSEEEEEEEEE
T ss_pred HhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcccceEEEEEE
Confidence 999999999999999888 4 68899987653 57776554
No 18
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=99.41 E-value=9.6e-12 Score=122.03 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=108.4
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccCC-----C---C-------
Q 009746 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL-----E---H------- 83 (527)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~-----~---~------- 83 (527)
.+.+.+.+|+|+||.|+. +|.- |. -+++..++.++-.. .++||||++|++.--. + +
T Consensus 2 rP~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~------~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~ 74 (217)
T PRK05625 2 RPYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAE------VDAVMVGIGTVLADDPSLTVHRYAAGKPENPIR 74 (217)
T ss_pred CCEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHH------CCEEEEccceEEccCCcceeeeccCCCCCCCEE
Confidence 367889999999999976 6666 97 45666666666532 7899999999996210 0 0
Q ss_pred -------------CCCC-CCcEEEEcCCCCCCCC----CCCCE-EE-----ECCHHHHHHHHhcCCCCCCCCcEEEEeCH
Q 009746 84 -------------RPLP-GRLNVVLTRSGSFDIA----TVENV-VI-----CGSIGSALELLAASPYCLSIEKVFVIGGG 139 (527)
Q Consensus 84 -------------~pl~-~R~niVlSrt~~~~~~----~~~~~-~v-----~~sl~eai~~l~~~~~~~~~~~I~ViGGa 139 (527)
+.+. ..+.+|+|+....... ...++ ++ ..++.++++.|++. +.++|||.||+
T Consensus 75 vVld~~~~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 150 (217)
T PRK05625 75 VVVDSSARTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER----GIKRLMVEGGG 150 (217)
T ss_pred EEECCCCCCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEecCH
Confidence 0111 1234444432210000 01122 22 13788999999876 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECcccc---cCccCCCCC------CCCceEeeeecCcccCCccEEEEEEEEc
Q 009746 140 QILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 140 ~Iy~~~L~~~lvDel~lT~I~~~~~---gd~fFP~~~------~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
++..+||+++++||+++++.|..+. |.++|+... ...|++.+... .++++ +..|.++
T Consensus 151 ~l~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~---~l~y~~~ 216 (217)
T PRK05625 151 TLIWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLELAKVCR--CDEGV---VLTYKVK 216 (217)
T ss_pred HHHHHHHHCCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEEeEEEE--ECCEE---EEEEEEc
Confidence 9999999999999999999998874 677887531 12566654432 34433 4777664
No 19
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=99.39 E-value=9.1e-12 Score=121.78 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=96.8
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCCCCC---------
Q 009746 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRP--------- 85 (527)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyes----lp~~~~p--------- 85 (527)
.+.+.+.+|+|+||.|+. +|...|. -+++..++.++-.. .++|||||+||+. +..+ ||
T Consensus 2 rP~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~l~~r-~~~~~~~~~P~ 74 (216)
T TIGR00227 2 RPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQ------SDAILVGSGTVLADDPRLTVR-WVELDELRNPV 74 (216)
T ss_pred CCEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhH------cCEEEECcCeEeccCCcceee-ccCcccCCCCe
Confidence 357899999999999986 7888896 46666666655542 7899999999996 2110 11
Q ss_pred ----------------CC-CCcEEEEcCCCCCCCC----CCCCEE-E---EC--CHHHHHHHHhcCCCCCCCCcEEEEeC
Q 009746 86 ----------------LP-GRLNVVLTRSGSFDIA----TVENVV-I---CG--SIGSALELLAASPYCLSIEKVFVIGG 138 (527)
Q Consensus 86 ----------------l~-~R~niVlSrt~~~~~~----~~~~~~-v---~~--sl~eai~~l~~~~~~~~~~~I~ViGG 138 (527)
+. ..+.+|+|++...... ...++. + .. ++.++++.|++. +.++|+|.||
T Consensus 75 ~vv~~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~----g~~~llveGG 150 (216)
T TIGR00227 75 RVVLDSQLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEE----GINSVMVEGG 150 (216)
T ss_pred EEEECCCCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHc----CCCEEEEeeC
Confidence 01 1234555543211000 011222 2 23 799999999876 4789999999
Q ss_pred HHHHHHHhcCCCcCEEEEEEECcccc---cCccCC
Q 009746 139 GQILSEALNAPECDAIHITEIETRIE---CDTFIP 170 (527)
Q Consensus 139 a~Iy~~~L~~~lvDel~lT~I~~~~~---gd~fFP 170 (527)
+++..+|++++++||+++++.|..+. |.++|.
T Consensus 151 ~~L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~ 185 (216)
T TIGR00227 151 GTLNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVD 185 (216)
T ss_pred HHHHHHHHHCCCCCEEEEEECchhhCCCCCcCccC
Confidence 99999999999999999999998875 555553
No 20
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.22 E-value=2.3e-10 Score=120.01 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=93.2
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCCCCCC-C------
Q 009746 21 KRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRPL-P------ 87 (527)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~~-p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyes----lp~~~~pl-~------ 87 (527)
-+-+.+.+|+|+||+|+. +|...|.- +++..++.++... .+++||||+||+. +.. .||- +
T Consensus 140 rP~v~~~~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~------~DailvG~~T~~~d~p~l~~-r~~~~~~~P~~v 212 (344)
T TIGR00326 140 LPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ------SDAILVGGGTVKADNPALTA-RLDEATEQPLRV 212 (344)
T ss_pred CCEEEEEEeeCCCCCccccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhHhHhCCcccc-cCCCCCCCCeEE
Confidence 467999999999999976 88889974 4555666555432 7899999999994 211 1221 0
Q ss_pred -----------------CCcEEEEcCCCCC-CCCCCCCEEEE----CCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHH
Q 009746 88 -----------------GRLNVVLTRSGSF-DIATVENVVIC----GSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145 (527)
Q Consensus 88 -----------------~R~niVlSrt~~~-~~~~~~~~~v~----~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~ 145 (527)
..+.+|+|++... ......++.+. .|+.++++.|++. +.++|+|.||+.+..+|
T Consensus 213 V~d~~~~~~~~~~~~~~~~~~~V~s~~~~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~----g~~~ilveGG~~L~~~l 288 (344)
T TIGR00326 213 VLDTQLRIPEFAKLIPQIAPTWIFTTARDKKKRLEAFEVNIFPLEKVTIREVMTQLGKR----GINSVLVEGGPNLLGSF 288 (344)
T ss_pred EEcCCCCCCCcchhhcCCCCEEEEECChhhhhHHhhCCeEEecCCCCCHHHHHHHHHhC----CCCEEEEeeHHHHHHHH
Confidence 2234555543210 00001122221 2789999999875 47899999999999999
Q ss_pred hcCCCcCEEEEEEECccccc
Q 009746 146 LNAPECDAIHITEIETRIEC 165 (527)
Q Consensus 146 L~~~lvDel~lT~I~~~~~g 165 (527)
+++++|||+++++.|..+.+
T Consensus 289 l~~gLVDEl~l~i~P~ilG~ 308 (344)
T TIGR00326 289 LDEGLVDELIIYIAPKLLGG 308 (344)
T ss_pred HHCCCCeEEEEEEccEEecC
Confidence 99999999999999987753
No 21
>PRK14059 hypothetical protein; Provisional
Probab=99.03 E-value=2.1e-08 Score=100.95 Aligned_cols=168 Identities=18% Similarity=0.210 Sum_probs=114.0
Q ss_pred CCceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCC---C----------C
Q 009746 20 PKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH---R----------P 85 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG~~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~---~----------p 85 (527)
..+-+.+.+|+|+||.|+.+|.--|. -+++.+++.++-.. .++|+.|.+|-..=-... . -
T Consensus 29 ~rP~V~lk~A~SlDGkia~~g~s~~It~~~~r~~~h~lRa~------~DAIlVG~~Tv~~DnP~L~r~~~~~~~~R~~~g 102 (251)
T PRK14059 29 DRPWLRANFVTSLDGAATVDGRSGGLGGPADRRVFGLLRAL------ADVVVVGAGTVRAENYGGVRLSAAARQQRQARG 102 (251)
T ss_pred CCCeEEEEEEEcCcccccCCCCCcCcCCHHHHHHHHHHHHH------CCEEEEchhhhhhcCccccccCHHHHHHHHhcC
Confidence 35789999999999999977776786 57777777766652 789999999986321100 0 0
Q ss_pred C-CCCcEEEEcCCCCCCCC------C-----------------------CCCEE-EE-----CCHHHHHHHHhcCCCCCC
Q 009746 86 L-PGRLNVVLTRSGSFDIA------T-----------------------VENVV-IC-----GSIGSALELLAASPYCLS 129 (527)
Q Consensus 86 l-~~R~niVlSrt~~~~~~------~-----------------------~~~~~-v~-----~sl~eai~~l~~~~~~~~ 129 (527)
. +.-+.||++++...+.. . ..++. +. -++.++++.|++. +
T Consensus 103 ~~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~----g 178 (251)
T PRK14059 103 QAEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR----G 178 (251)
T ss_pred CCCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhC----C
Confidence 0 12234666665432100 0 00111 11 2678889999875 5
Q ss_pred CCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccc-c-CccCCCC--CCCCceEeeeecCcccCCccEEEEEEEEc
Q 009746 130 IEKVFVIGGGQILSEALNAPECDAIHITEIETRIE-C-DTFIPSI--DSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 130 ~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~-g-d~fFP~~--~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
.+.|+|.||+++..+|++++++||+++++.|..+. | -++|+.. ....|++.+... .++ +..+..|.+.
T Consensus 179 ~~~vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~~~~~~l~L~~~~~--~~~--g~v~l~Y~~~ 250 (251)
T PRK14059 179 LRRILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGPGQAPTRMRLAHVLT--DDD--GYLFLRYVRA 250 (251)
T ss_pred CCEEEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCCCCCCcCeEEEEEEE--cCC--CEEEEEEEeC
Confidence 78999999999999999999999999999998884 4 4677653 234677765432 234 4588999874
No 22
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=98.87 E-value=1.5e-07 Score=92.25 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=93.6
Q ss_pred eEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCCCCC-CCCCcEEEEc
Q 009746 23 SYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRP-LPGRLNVVLT 95 (527)
Q Consensus 23 ki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyes----lp~~~~p-l~~R~niVlS 95 (527)
-+.+-+|+|+||.|+. +|+ -|. -+++.+++.++-.. .++|+.|.+|-.. +..+... -.....||++
T Consensus 2 ~V~lk~A~SlDGkia~~~g~-~~it~~~~r~~~h~lRa~------~DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld 74 (210)
T TIGR01508 2 YVIVNVAMSLDGKLATINRD-SRISCEEDLIRVHEIRAE------VDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVD 74 (210)
T ss_pred EEEEEEeecCcccccCCCCC-cCcCCHHHHHHHHHHHHH------CCEEEECcCeEEecCCcccccCcccCCCCEEEEEC
Confidence 4778999999999986 666 563 46777777776653 7899999999863 2211000 0122457777
Q ss_pred CCCCCCCC----------------C----------CCCE--EEEC----CHHHHHHHHhcCCCCCCCCcEEEEeCHHHHH
Q 009746 96 RSGSFDIA----------------T----------VENV--VICG----SIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (527)
Q Consensus 96 rt~~~~~~----------------~----------~~~~--~v~~----sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~ 143 (527)
++...+.. . ..++ +.+. ++.++++.|++. +.++|+|-||+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~~ 150 (210)
T TIGR01508 75 SKLRVPLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDK----GVRRLMVEGGGTLIW 150 (210)
T ss_pred CCCCCCCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEeeCHHHHH
Confidence 65532100 0 0111 1111 677888888765 578999999999999
Q ss_pred HHhcCCCcCEEEEEEECcccc---cCccCC
Q 009746 144 EALNAPECDAIHITEIETRIE---CDTFIP 170 (527)
Q Consensus 144 ~~L~~~lvDel~lT~I~~~~~---gd~fFP 170 (527)
+|++++++||+++++.|..+. +..+|.
T Consensus 151 ~fl~~~LvDel~l~i~P~ilG~~~~~~~~~ 180 (210)
T TIGR01508 151 SLFKENLVDEISVYIAPKIFGGRDAPTYVD 180 (210)
T ss_pred HHHHCCCCcEEEEEEcCEEEcCCCCcCccC
Confidence 999999999999999998875 344554
No 23
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.62 E-value=2.5e-06 Score=90.17 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=91.0
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccc----cCCCCC---CCCCCcEE
Q 009746 21 KRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHR---PLPGRLNV 92 (527)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyes----lp~~~~---pl~~R~ni 92 (527)
++-+.+-+|+|+||.||. +|.-...-+++.++..++-.. .++|++|..|-.. |-.+.. +-++-..|
T Consensus 139 rP~V~lK~A~SLDGkIA~~~G~s~IT~~~ar~~vh~lRa~------~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~P~RV 212 (360)
T PRK14719 139 LPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKD------VDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRI 212 (360)
T ss_pred CCeEEEEEEEcCcCcccCCCCCCCcCCHHHHHHHHHHHHH------CCEEEECcchHhhcCCCCccccccccCCCCCEEE
Confidence 577999999999999987 555333356777777766653 7899999999842 111000 10122345
Q ss_pred EEcCCCCCCCC-----------------------------CCCCEE-EE-----CCHHHHHHHHhcCCCCCCCCcEEEEe
Q 009746 93 VLTRSGSFDIA-----------------------------TVENVV-IC-----GSIGSALELLAASPYCLSIEKVFVIG 137 (527)
Q Consensus 93 VlSrt~~~~~~-----------------------------~~~~~~-v~-----~sl~eai~~l~~~~~~~~~~~I~ViG 137 (527)
|++++...+.. ...++. +. -++.++++.|.+. +...|||-|
T Consensus 213 VlD~~l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~----gi~svlVEG 288 (360)
T PRK14719 213 VVDSNLKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKM----GINKILLEG 288 (360)
T ss_pred EEeCCCCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhC----CCCEEEEEe
Confidence 55554321000 000111 11 1677888888765 578999999
Q ss_pred CHHHHHHHhcCCCcCEEEEEEECccccc
Q 009746 138 GGQILSEALNAPECDAIHITEIETRIEC 165 (527)
Q Consensus 138 Ga~Iy~~~L~~~lvDel~lT~I~~~~~g 165 (527)
|+++..+|++++++||+++++.|..+.|
T Consensus 289 G~~l~~sfl~~~LvDel~l~iaP~ilGg 316 (360)
T PRK14719 289 GGTLNWGMFKENLINEVRVYIAPKVFGG 316 (360)
T ss_pred CHHHHHHHHHCCCceEEEEEEccEEECC
Confidence 9999999999999999999999988854
No 24
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=98.46 E-value=1.1e-05 Score=79.76 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=96.4
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEcccccccc-C---CCCCCC---CCCcE
Q 009746 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI-P---LEHRPL---PGRLN 91 (527)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyesl-p---~~~~pl---~~R~n 91 (527)
.+.+.+-+|+|+||.||. +|+--|. -+++.+...++-.. .++|+.|..|-..= | .+.-.. .+-..
T Consensus 3 rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~------~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~r 76 (218)
T COG1985 3 RPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAE------SDAILVGSGTVLADNPSLTVRLPEGGEERNPVR 76 (218)
T ss_pred CCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHH------cCEEEECccEEEeeCCccccccCCCCccCCCEE
Confidence 347899999999999997 6666697 56666555555542 68999999998742 1 010011 23346
Q ss_pred EEEcCCCCCCCC----C-C---CCE--------------------EEEC----CHHHHHHHHhcCCCCCCCCcEEEEeCH
Q 009746 92 VVLTRSGSFDIA----T-V---ENV--------------------VICG----SIGSALELLAASPYCLSIEKVFVIGGG 139 (527)
Q Consensus 92 iVlSrt~~~~~~----~-~---~~~--------------------~v~~----sl~eai~~l~~~~~~~~~~~I~ViGGa 139 (527)
||++++...+.. . . +.. ++++ |+..+++.|.+. +...|+|=||+
T Consensus 77 VIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~----~i~~vlvEGG~ 152 (218)
T COG1985 77 VILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAER----GINSVLVEGGA 152 (218)
T ss_pred EEECCCCcCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhC----CCcEEEEccCH
Confidence 666665432100 0 0 111 2222 578888888876 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECccccc--CccCCC
Q 009746 140 QILSEALNAPECDAIHITEIETRIEC--DTFIPS 171 (527)
Q Consensus 140 ~Iy~~~L~~~lvDel~lT~I~~~~~g--d~fFP~ 171 (527)
.+..+||++++|||+.+++.|..+.| -+++..
T Consensus 153 ~L~~s~l~~glVDel~l~iaP~i~G~~~~~~~~~ 186 (218)
T COG1985 153 TLNGSFLEAGLVDELLLYIAPKILGGSARTLVGG 186 (218)
T ss_pred HHHHHHHHcCCCcEEEEEEechhhcCCCCccccC
Confidence 99999999999999999999988854 556654
No 25
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.38 E-value=7.7e-06 Score=86.79 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=95.7
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCC---CC-C--------
Q 009746 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH---RP-L-------- 86 (527)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~---~p-l-------- 86 (527)
-+-+.+-+|+|+||.|+. +|+--|. -++|..++.++-.. .++|++|..|-..=.... .+ +
T Consensus 146 rP~V~~k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa~------~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~ 219 (367)
T PRK10786 146 FPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ------SHAILTSSATVLADDPALTVRWSELDAQTQALY 219 (367)
T ss_pred cceEEEEEeecCCCCccCCCCcccccCCHHHHHHHHHHHhH------CCEEEECcChHhhcCCCcccccccccccccccc
Confidence 456899999999999986 7777786 67888777776653 789999999986321100 00 0
Q ss_pred -----CCCcEEEEcCCCCCCCC------C---------------CCCE---EEE-----CCHHHHHHHHhcCCCCCCCCc
Q 009746 87 -----PGRLNVVLTRSGSFDIA------T---------------VENV---VIC-----GSIGSALELLAASPYCLSIEK 132 (527)
Q Consensus 87 -----~~R~niVlSrt~~~~~~------~---------------~~~~---~v~-----~sl~eai~~l~~~~~~~~~~~ 132 (527)
+.-..||++++...+.. . ..++ .+. -++.++++.|.+. +.+.
T Consensus 220 ~~~~~~~P~rvV~d~~g~l~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~----Gi~~ 295 (367)
T PRK10786 220 PQENLRQPVRIVIDSQNRVTPEHRIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHLDLVVLMMQLGKQ----QINS 295 (367)
T ss_pred ccccCCCCcEEEEcCCCCCCchhhhhcCCCCEEEEEcCchhhhhhcCceEEEEeCCCCCcCHHHHHHHHHhC----CCCE
Confidence 11235888887532100 0 0011 111 1677888888765 5789
Q ss_pred EEEEeCHHHHHHHhcCCCcCEEEEEEECccccc
Q 009746 133 VFVIGGGQILSEALNAPECDAIHITEIETRIEC 165 (527)
Q Consensus 133 I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~g 165 (527)
|||-||+.+..+|++++++||+++++.|..+.+
T Consensus 296 l~veGG~~l~~~~l~~~lvDe~~~~~aP~~~G~ 328 (367)
T PRK10786 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGS 328 (367)
T ss_pred EEEeeCHHHHHHHHHCCCccEEEEEEcceeccC
Confidence 999999999999999999999999999987743
No 26
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=97.66 E-value=0.001 Score=71.06 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=86.1
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCC--C-C-CCCCcEEEE
Q 009746 20 PKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH--R-P-LPGRLNVVL 94 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~--~-p-l~~R~niVl 94 (527)
..+-+.+-+|+|+||.|+. .|.--|.-..+.+..+.. .++|+.| +|--.=.+.. + | ..+-..||+
T Consensus 174 ~rP~V~lK~A~SlDGkia~~~g~s~~~s~~~vh~lRa~---------~DAIlVG-~Tv~~DnP~Lt~R~~~~~~PiRVVl 243 (380)
T PLN02807 174 GKPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQLLQE---------YDAVILS-SALADADPLPLSQEAGAKQPLRIII 243 (380)
T ss_pred ccccEEEEEEEcCCCCeeCCCCCChhhhhHHHHHHHhh---------CCEEEEc-CEeeccCCCCccCCCCCCCCEEEEE
Confidence 3567899999999999986 454444333333333322 6899999 8864211100 1 1 122345777
Q ss_pred cCCCCCCCC-------CCCCEEEE---------------------C--CHHHHHHHHhcCCCCCCCCcEEEEe------C
Q 009746 95 TRSGSFDIA-------TVENVVIC---------------------G--SIGSALELLAASPYCLSIEKVFVIG------G 138 (527)
Q Consensus 95 Srt~~~~~~-------~~~~~~v~---------------------~--sl~eai~~l~~~~~~~~~~~I~ViG------G 138 (527)
+++...+.. ....++++ . ++.++++.|.+. +...|+|=| |
T Consensus 244 d~~l~~p~~~~i~~~~~~~~~iv~t~~~~~~~~~l~~~gv~vv~~~~~dl~~iL~~L~~~----Gi~svLVEGG~~~~~G 319 (380)
T PLN02807 244 ARSESSPLQIPSLREESAAKVLVLADKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQR----GLCSVLLDLRGNVGGL 319 (380)
T ss_pred cCCCCCCCcceecccCCCCCEEEEECCchhhHHHHHhCCeEEEECCCCCHHHHHHHHHHC----CCCEEEEecCCCCCCH
Confidence 776532100 00011111 1 678888888765 589999999 8
Q ss_pred HHHHHHHhcCCCcCEEEEEEECccccc
Q 009746 139 GQILSEALNAPECDAIHITEIETRIEC 165 (527)
Q Consensus 139 a~Iy~~~L~~~lvDel~lT~I~~~~~g 165 (527)
+++..+||+++++||+++++.|..+.+
T Consensus 320 ~~L~~sfl~~~LvDei~~yiAP~ilG~ 346 (380)
T PLN02807 320 ESLLKDALEDKLLQKVVVEVLPFWSGS 346 (380)
T ss_pred HHHHHHHHHCCCccEEEEEEcCceecC
Confidence 999999999999999999999998854
No 27
>PHA03370 virion protein US2; Provisional
Probab=32.05 E-value=1.5e+02 Score=30.06 Aligned_cols=85 Identities=9% Similarity=0.123 Sum_probs=50.6
Q ss_pred CHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhc-CCCcCEEEEEEECcccccCc------cCCCCCCCCceE----ee
Q 009746 113 SIGSALELLAASPYCLSIEKVFVIGGGQILSEALN-APECDAIHITEIETRIECDT------FIPSIDSSVFQP----WY 181 (527)
Q Consensus 113 sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~-~~lvDel~lT~I~~~~~gd~------fFP~~~~~~f~l----~~ 181 (527)
|+..-...|.+.-.....-+.||+|-|.|++.+++ .+.=-++....++....|-+ +-|.+. ..|+. .+
T Consensus 113 sv~sGy~~LnSg~~gn~pyhLWVlGAADLC~p~~e~ip~pkRli~~kv~~tW~G~~W~lPd~~~~~~t-s~W~P~~~~~~ 191 (269)
T PHA03370 113 DVLSGYLMLESEVSGNHSYSLWIVGAADICRPAIEQIPLPKRLLAIKVPGTWSGMPWAIPDGIQTLLT-STWEPKFDTTE 191 (269)
T ss_pred hHHHHHHHhccccccCcceeeEEechHHHHHHHHHhCCCCceEEEEEcCccccCCcccCCCCCCccee-ccCCCCCCchh
Confidence 45555566765432233456999999999999994 35556888888888776644 223221 22332 22
Q ss_pred eecCcccCCccEEEEEE
Q 009746 182 SSFPIVENNIRYCLSTY 198 (527)
Q Consensus 182 ~~~~~~e~~~~~~f~~Y 198 (527)
...+...+|..+.|.+-
T Consensus 192 ~k~~~~~~~~~c~y~~i 208 (269)
T PHA03370 192 DKAHFEDSGMKCVYKII 208 (269)
T ss_pred hhhhhhcCCceEEeeec
Confidence 22344566776655554
No 28
>PRK00536 speE spermidine synthase; Provisional
Probab=27.64 E-value=35 Score=34.88 Aligned_cols=43 Identities=12% Similarity=0.381 Sum_probs=33.0
Q ss_pred CCCcEEEEeCHH--HHHHHhcCCCcCEEEEEEECccc--ccCccCCCCC
Q 009746 129 SIEKVFVIGGGQ--ILSEALNAPECDAIHITEIETRI--ECDTFIPSID 173 (527)
Q Consensus 129 ~~~~I~ViGGa~--Iy~~~L~~~lvDel~lT~I~~~~--~gd~fFP~~~ 173 (527)
..++|.|+||+. +.+++|+++ +++.+-.|...+ -|-.|||.+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHH
Confidence 358999999975 999999987 477777666543 4788899754
No 29
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=23.48 E-value=1.2e+02 Score=26.90 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=53.0
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009746 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~ 103 (527)
..+++++. ..-+.+-++.|.-.-|++.+.+... ..+++.|.|.++.-- |.++ + ..
T Consensus 22 ~~~~~~lN--d~~aDG~DvSWiWDvdFE~L~~~~i-------~~viv~G~Ra~Dmal--------RLky--A------Gv 76 (113)
T PF08353_consen 22 KSVLIALN--DNYADGRDVSWIWDVDFEKLADPNI-------KQVIVSGTRAEDMAL--------RLKY--A------GV 76 (113)
T ss_pred ceEEEEec--CCCCCCccceEEeecCHHHHhcCCC-------CEEEEEeeeHHHHHh--------Heee--c------Cc
Confidence 44555554 3335556688987778777765443 568999999888642 2111 0 01
Q ss_pred CCCCEEEECCHHHHHHH--HhcCCCCCCCCcEEEEe
Q 009746 104 TVENVVICGSIGSALEL--LAASPYCLSIEKVFVIG 137 (527)
Q Consensus 104 ~~~~~~v~~sl~eai~~--l~~~~~~~~~~~I~ViG 137 (527)
+.+.+.+..++++|++. +... +.+.++|+.
T Consensus 77 ~~~~i~v~~d~~~a~~~~~~~~~----~~~~~yil~ 108 (113)
T PF08353_consen 77 DEEKIIVEEDLEEALDAFLIKSD----PTDKVYILA 108 (113)
T ss_pred chHHeEecCCHHHHHHHHHHhcC----CCCcEEEEE
Confidence 22346677899999998 4443 357798874
Done!