BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009747
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/529 (46%), Positives = 330/529 (62%), Gaps = 51/529 (9%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT------QITSDAGKRNAVIMGRKT 75
R++ +VVA GIG +PW +P D+KFF+++T + KRNAV+MGRKT
Sbjct: 21 RAFSLVVAVDERGGIGDGRSIPWNVPEDMKFFRDVTTKLRGKNVKPSPAKRNAVVMGRKT 80
Query: 76 WESIPLEHRPLPGRLNVVLTRSGSF-------------DIATVENVVICGSIGSALELLA 122
W+SIP + RPLPGRLNVVL+ + + ++ V + G + AL+LLA
Sbjct: 81 WDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALQLLA 140
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182
+ Y SIE V+ IGGG + +EAL P +H+ + R T I + +SS
Sbjct: 141 SPNYTPSIETVYCIGGGSVYAEALRPP---CVHLLQAIYR----TTIRASESSC------ 187
Query: 183 SFPIVENNIRYCLSTYVRVRSAAVES---LSQNNDIVLDSKTNSDKFEVKQFSFLPKMVF 239
S + RV + E+ + + + + T+++ E K + K++
Sbjct: 188 -------------SVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYY--FEKLIP 232
Query: 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTT-FPLLTTKKVFWRGV 298
EE YL LV II +GN+K DRTG GTLS FG QMR++LR PLLTTK+VFWRGV
Sbjct: 233 RNREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGV 292
Query: 299 VEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGA 358
EELLWF+ G T AK L +K +HIWD N SR +LDS GLT+ EE DLGPVYGFQWRHFGA
Sbjct: 293 CEELLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGA 352
Query: 359 RYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA 418
YT+ A+Y GQG DQ+ ++ +K NP+DRR++ +AWNPS L MALPPCH+ AQFY++
Sbjct: 353 AYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVS 412
Query: 419 NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 478
NGELSC +YQRS DMGLGVPFNIASYALLT +IA L PG+ +H +GDAHVY NHV P
Sbjct: 413 NGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEP 472
Query: 479 LEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
EQL+++P+ FP L E++ ++ + D ++I Y P+ I MKMAV
Sbjct: 473 CNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/529 (46%), Positives = 329/529 (62%), Gaps = 51/529 (9%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT------QITSDAGKRNAVIMGRKT 75
R++ +VVA GIG +PW +P D+KFF+++T + KRNAV+MGRKT
Sbjct: 21 RAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKT 80
Query: 76 WESIPLEHRPLPGRLNVVLTRSGSF-------------DIATVENVVICGSIGSALELLA 122
W+SIP + RPLPGRLNVVL+ + + ++ V + G + AL LLA
Sbjct: 81 WDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLA 140
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182
+ Y SIE V+ IGGG + +EAL P +H+ + R T I + +SS
Sbjct: 141 SPNYTPSIETVYCIGGGSVYAEALRPP---CVHLLQAIYR----TTIRASESSC------ 187
Query: 183 SFPIVENNIRYCLSTYVRVRSAAVES---LSQNNDIVLDSKTNSDKFEVKQFSFLPKMVF 239
S + RV + E+ + + + + T+++ E K + K++
Sbjct: 188 -------------SVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYY--FEKLIP 232
Query: 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTT-FPLLTTKKVFWRGV 298
EE YL LV II +GN+K DRTG GTLS FG QMR++LR PLLTTK+VFWRGV
Sbjct: 233 RNREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGV 292
Query: 299 VEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGA 358
EELLWF+ G T AK L +K +HIWD N SR +LDS GLT+ EE DLGPVYGFQWRHFGA
Sbjct: 293 CEELLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGA 352
Query: 359 RYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA 418
YT+ A+Y GQG DQ+ ++ +K NP+DRR++ +AWNPS L MALPPCH+ AQFY++
Sbjct: 353 AYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVS 412
Query: 419 NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 478
NGELSC +YQRS DMGLGVPFNIASYALLT +IA L PG+ +H +GDAHVY NHV P
Sbjct: 413 NGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEP 472
Query: 479 LEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
EQL+++P+ FP L E++ ++ + D ++I Y P+ I MKMAV
Sbjct: 473 CNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 318/520 (61%), Gaps = 25/520 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
VV A+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
L R+ VV++ S D A NVV+ ++ ++E L SIE +FV GG I +A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDA 122
Query: 146 LNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSA 204
L D I++T + IE DT+ P I + F P Y S NI Y + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIFEKQEKK 181
Query: 205 AVES-------LSQNNDIV--------LDSKTNSDKFEVKQFSFLPKMVF-EKHEEYLYL 248
+++ L +D V + N KF ++ P + F +H E+ YL
Sbjct: 182 TLQNCDPARGQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYL 241
Query: 249 RLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISG 308
L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKVF RG+ EEL+WFI G
Sbjct: 242 DLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVFIRGIFEELIWFIKG 301
Query: 309 STNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYS 368
TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y MH DY+
Sbjct: 302 DTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYT 361
Query: 369 GQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE-LSCQMY 427
G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +Q+Y+ N LSC +Y
Sbjct: 362 GVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLY 421
Query: 428 QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 487
QRS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L+EQL + P
Sbjct: 422 QRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTP 481
Query: 488 KPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 482 RPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 317/520 (60%), Gaps = 25/520 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
VV A+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
L R+ VV++ S D A NVV+ ++ ++E L SIE +FV GG I +A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDA 122
Query: 146 LNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSA 204
L D I++T + IE DT+ P I + F P Y S NI Y + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIFEKQEKK 181
Query: 205 AVES-------LSQNNDIV--------LDSKTNSDKFEVKQFSFLPKMVF-EKHEEYLYL 248
+++ L +D V + N KF ++ P + F +H E+ YL
Sbjct: 182 TLQNCDPARGQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYL 241
Query: 249 RLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISG 308
L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKVF R + EEL+WFI G
Sbjct: 242 DLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVFIRSIFEELIWFIKG 301
Query: 309 STNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYS 368
TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y MH DY+
Sbjct: 302 DTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYT 361
Query: 369 GQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE-LSCQMY 427
G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +Q+Y+ N LSC +Y
Sbjct: 362 GVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLY 421
Query: 428 QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 487
QRS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L+EQL + P
Sbjct: 422 QRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTP 481
Query: 488 KPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 482 RPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 317/520 (60%), Gaps = 25/520 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
VV A+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI RP
Sbjct: 7 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 64
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
L R+ VV++ S D A NVV+ ++ ++E L SIE +FV GG I +A
Sbjct: 65 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDA 120
Query: 146 LNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSA 204
L D I++T + IE DT+ P I + F P Y S NI Y + +
Sbjct: 121 LKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIFEKQEKK 179
Query: 205 AVES-------LSQNNDIV--------LDSKTNSDKFEVKQFSFLPKMVF-EKHEEYLYL 248
+++ L +D V + N KF ++ P + F +H E+ YL
Sbjct: 180 TLQNCDPARGQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYL 239
Query: 249 RLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISG 308
L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKV RG+ EEL+WFI G
Sbjct: 240 DLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRGIFEELIWFIKG 299
Query: 309 STNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYS 368
TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y MH DY+
Sbjct: 300 DTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYT 359
Query: 369 GQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE-LSCQMY 427
G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +Q+Y+ N LSC +Y
Sbjct: 360 GVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLY 419
Query: 428 QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 487
QRS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L+EQL + P
Sbjct: 420 QRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTP 479
Query: 488 KPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 480 RPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 519
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/520 (45%), Positives = 316/520 (60%), Gaps = 25/520 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
VV A+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
L R+ VV++ S D A NVV+ ++ ++E L SIE +FV GG I +A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDA 122
Query: 146 LNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSA 204
L D I++T + IE DT+ P I + F P Y S NI Y + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIFEKQEKK 181
Query: 205 AVES-------LSQNNDIV--------LDSKTNSDKFEVKQFSFLPKMVF-EKHEEYLYL 248
+++ L +D V + N KF ++ P + F +H E+ YL
Sbjct: 182 TLQNCDPARGQLKSIDDTVDLLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYL 241
Query: 249 RLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISG 308
L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKV R + EEL+WFI G
Sbjct: 242 DLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKG 301
Query: 309 STNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYS 368
TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y MH DY+
Sbjct: 302 DTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYT 361
Query: 369 GQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE-LSCQMY 427
G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +Q+Y+ N LSC +Y
Sbjct: 362 GVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLY 421
Query: 428 QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 487
QRS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L+EQL + P
Sbjct: 422 QRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTP 481
Query: 488 KPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 482 RPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/520 (45%), Positives = 316/520 (60%), Gaps = 25/520 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
VV A+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
L R+ VV++ S D A NVV+ ++ ++E L SIE +FV GG I +A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDA 122
Query: 146 LNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSA 204
L D I++T + IE DT+ P I + F P Y S NI Y + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIFEKQEKK 181
Query: 205 AVES-------LSQNNDIV--------LDSKTNSDKFEVKQFSFLPKMVF-EKHEEYLYL 248
+++ L +D V + N KF ++ P + F +H E+ YL
Sbjct: 182 TLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYL 241
Query: 249 RLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISG 308
L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKV R + EEL+WFI G
Sbjct: 242 DLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKG 301
Query: 309 STNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYS 368
TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y MH DY+
Sbjct: 302 DTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYT 361
Query: 369 GQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE-LSCQMY 427
G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +Q+Y+ N LSC +Y
Sbjct: 362 GVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLY 421
Query: 428 QRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 487
QRS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L+EQL + P
Sbjct: 422 QRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLSRTP 481
Query: 488 KPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 482 RPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/577 (40%), Positives = 318/577 (55%), Gaps = 93/577 (16%)
Query: 35 GIGKDGKLPWKLPS-DLKFFKEITQITSDAG------KR--------------------- 66
G+G G LPWK S D+K+F +T +++ KR
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 67 -NAVIMGRKTWESIPLEHRPLPGRLNVVLTRS---GSFDIATVENVVICGSIGSALELLA 122
N V+MGR TWESIP + +PL R+NV+L+R+ FD E+V I + + LL
Sbjct: 99 QNVVVMGRTTWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182
L+ K F+IGG + E L I+ T I + ECD F P I+ + +Q
Sbjct: 155 K----LNYYKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 183 SFPIVENNIRYCLSTYVRVRSA------AVESLSQNNDIVL---DSKT-----------N 222
S NN Y + + ++ +NND+ L D T N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTCHMKKLTEFYKN 270
Query: 223 SDKFEVK---------------------------------QFSFLPKMVFEKHEEYLYLR 249
DK+++ F + ++ H EY YL
Sbjct: 271 VDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLN 330
Query: 250 LVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGS 309
++ DI+ +GN + DRTG G LSKFG M+++L FPLLTTKK+F RG++EELLWFI G
Sbjct: 331 IIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGE 390
Query: 310 TNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSG 369
TN L K++ IW+ N +RE+LD+ L RE DLGP+YGFQWRHFGA YTNM+ +Y
Sbjct: 391 TNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYEN 450
Query: 370 QGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQR 429
+G DQL ++IN IKN+P RRI+L AWN DL MALPPCH+ QFY+ +G+LSC MYQR
Sbjct: 451 KGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQR 510
Query: 430 SADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKP 489
S D+GLGVPFNIASY++ T MIA VC+L P FIHV+G+AHVY NH+ L+ QL ++P P
Sbjct: 511 SCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYP 570
Query: 490 FPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 526
FP LK+NP+ K+I+ F DF + Y H+KI M MA
Sbjct: 571 FPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/577 (40%), Positives = 318/577 (55%), Gaps = 93/577 (16%)
Query: 35 GIGKDGKLPWKLPS-DLKFFKEITQITSDAG------KR--------------------- 66
G+G G LPWK S D+K+F+ +T +++ KR
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 67 -NAVIMGRKTWESIPLEHRPLPGRLNVVLTRS---GSFDIATVENVVICGSIGSALELLA 122
N V+MGR WESIP + +PL R+NV+L+R+ FD E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182
L+ K F++GG + E L I+ T I + ECD F P I+ + +Q
Sbjct: 155 K----LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 183 SFPIVENNIRYCLSTYVRVRSA------AVESLSQNNDIVL---DSKT-----------N 222
S NN Y + + ++ +NND+ L D T N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTCHMKKLTEFYKN 270
Query: 223 SDKFEVK---------------------------------QFSFLPKMVFEKHEEYLYLR 249
DK+++ F + ++ H EY YL
Sbjct: 271 VDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLN 330
Query: 250 LVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGS 309
++ DI+ +GN + DRTG G LSKFG M+++L FPLLTTKK+F RG++EELLWFI G
Sbjct: 331 IIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGE 390
Query: 310 TNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSG 369
TN L K++ IW+ N +RE+LD+ L RE DLGP+YGFQWRHFGA YTNM+ +Y
Sbjct: 391 TNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYEN 450
Query: 370 QGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQR 429
+G DQL ++IN IKN+P RRI+L AWN DL MALPPCH+ QFY+ +G+LSC MYQR
Sbjct: 451 KGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQR 510
Query: 430 SADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKP 489
S D+GLGVPFNIASY++ T MIA VC+L P FIHV+G+AHVY NH+ L+ QL ++P P
Sbjct: 511 SCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYP 570
Query: 490 FPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 526
FP LK+NP+ K+I+ F DF + Y H+KI M MA
Sbjct: 571 FPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/577 (40%), Positives = 318/577 (55%), Gaps = 93/577 (16%)
Query: 35 GIGKDGKLPWKLPS-DLKFFKEITQITSDAG------KR--------------------- 66
G+G G LPWK S D+K+F +T +++ KR
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 67 -NAVIMGRKTWESIPLEHRPLPGRLNVVLTRS---GSFDIATVENVVICGSIGSALELLA 122
N V+MGR +WESIP + +PL R+NV+L+R+ FD E+V I + + LL
Sbjct: 99 QNVVVMGRTSWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182
L+ K F+IGG + E L I+ T I + ECD F P I+ + +Q
Sbjct: 155 K----LNYYKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 183 SFPIVENNIRYCLSTYVRVRSA------AVESLSQNNDIVL---DSKT-----------N 222
S NN Y + + ++ +NND+ L D T N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTCHMKKLTEFYKN 270
Query: 223 SDKFEVK---------------------------------QFSFLPKMVFEKHEEYLYLR 249
DK+++ F + ++ H EY YL
Sbjct: 271 VDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLN 330
Query: 250 LVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGS 309
++ DI+ +GN + DRTG G LSKFG M+++L FPLLTTKK+F RG++EELLWFI G
Sbjct: 331 IIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGE 390
Query: 310 TNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSG 369
TN L K++ IW+ N +RE+LD+ L RE DLGP+YGFQWRHFGA YTNM+ +Y
Sbjct: 391 TNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYEN 450
Query: 370 QGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQR 429
+G DQL ++IN IKN+P RRI+L AWN DL MALPPCH+ QFY+ +G+LSC MYQR
Sbjct: 451 KGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQR 510
Query: 430 SADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKP 489
S D+GLGVPFNIASY++ T MIA VC+L P FIHV+G+AHVY NH+ L+ QL ++P P
Sbjct: 511 SCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYP 570
Query: 490 FPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 526
FP LK+NP+ K+I+ F DF + Y H+KI M MA
Sbjct: 571 FPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/513 (41%), Positives = 316/513 (61%), Gaps = 27/513 (5%)
Query: 26 VVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQ------ITSDAGKRNAVIMGRKTWES 78
+ VA + IG ++PW + D +F + T ++ + +N VI GRKT+ES
Sbjct: 13 IFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES 72
Query: 79 IPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGG 138
IP PL R+NV+L+R+ + V ++ + +A+ L A+ + K+F++GG
Sbjct: 73 IPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRAN---VPHNKIFILGG 125
Query: 139 GQILSEALNAPECDAIHITEIETRIECDTFIPSI----DSSVFQPWYSSFPIVENNIRYC 194
+ E L+ CD I++T + DT+ P I + + P +S+ + + Y
Sbjct: 126 SFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDTFEITAISPTFST-----DFVSYD 180
Query: 195 LSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVK-QFSFLPKMVFEKHEEYLYLRLVQD 253
Y R V + +++ T +D K ++ P + HEE+ YL ++ D
Sbjct: 181 FVIYERKDCKTVFPDPPFDQLLM---TGTDISVPKPKYVACPGVRIRNHEEFQYLDILAD 237
Query: 254 IISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAK 313
++S G LK +RTGT SKFG QMR++L +FPLLTTKKV R ++EELLWFI GSTN
Sbjct: 238 VLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGN 297
Query: 314 VLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFD 373
L K++ IW+ N R++LD G TDREE DLGP+YGFQWRHFGA Y +MHADY+G+G D
Sbjct: 298 DLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGID 357
Query: 374 QLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 433
QL ++IN+IK NPNDRR+++ +WN SDLK MALPPCH F QFY+++ +LSC M+QRS D+
Sbjct: 358 QLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLSCMMHQRSCDL 417
Query: 434 GLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPIL 493
GLGVPFNIASY++LT M+A VC L G+F+H + DAH+Y +HV + Q+ ++P PFP L
Sbjct: 418 GLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPHPFPRL 477
Query: 494 KINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 526
++NP+ ++I+ F +D + Y H I M M+
Sbjct: 478 RLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMS 510
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/513 (41%), Positives = 316/513 (61%), Gaps = 27/513 (5%)
Query: 26 VVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQ------ITSDAGKRNAVIMGRKTWES 78
+ VA + IG ++PW + D +F + T ++ + +N VI GRKT+ES
Sbjct: 17 IFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES 76
Query: 79 IPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGG 138
IP PL R+NV+L+R+ + V ++ + +A+ L A+ + K+F++GG
Sbjct: 77 IPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRAN---VPHNKIFILGG 129
Query: 139 GQILSEALNAPECDAIHITEIETRIECDTFIPSI----DSSVFQPWYSSFPIVENNIRYC 194
+ E L+ CD I++T + DT+ P I + + P +S+ + + Y
Sbjct: 130 SFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDTFEITAISPTFST-----DFVSYD 184
Query: 195 LSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVK-QFSFLPKMVFEKHEEYLYLRLVQD 253
Y R V + +++ T +D K ++ P + HEE+ YL ++ D
Sbjct: 185 FVIYERKDCKTVFPDPPFDQLLM---TGTDISVPKPKYVACPGVRIRNHEEFQYLDILAD 241
Query: 254 IISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAK 313
++S G LK +RTGT SKFG QMR++L +FPLLTTKKV R ++EELLWFI GSTN
Sbjct: 242 VLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGN 301
Query: 314 VLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFD 373
L K++ IW+ N R++LD G TDREE DLGP+YGFQWRHFGA Y +MHADY+G+G D
Sbjct: 302 DLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGID 361
Query: 374 QLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 433
QL ++IN+IK NPNDRR+++ +WN SDLK MALPPCH F QFY+++ +LSC M+QRS D+
Sbjct: 362 QLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLSCMMHQRSCDL 421
Query: 434 GLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPIL 493
GLGVPFNIASY++LT M+A VC L G+F+H + DAH+Y +HV + Q+ ++P PFP L
Sbjct: 422 GLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPHPFPRL 481
Query: 494 KINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 526
++NP+ ++I+ F +D + Y H I M M+
Sbjct: 482 RLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMS 514
>pdb|3IHI|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase
pdb|3IHI|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase
pdb|4E5O|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|E Chain E, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|F Chain F, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4EB4|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
Length = 307
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/287 (66%), Positives = 227/287 (79%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300
+H E YLR V+ I+ G K+DRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+E
Sbjct: 21 RHGELQYLRQVEHILRCGFKKEDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLE 80
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARY 360
ELLWFI GSTNAK L K + IWD N SR++LDS+G + R+EGDLGPVYGFQWRHFGA Y
Sbjct: 81 ELLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGAEY 140
Query: 361 TNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANG 420
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ NG
Sbjct: 141 KDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNG 200
Query: 421 ELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480
ELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDF+H +GDAH+Y NH+ PL+
Sbjct: 201 ELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLK 260
Query: 481 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP LKI + + ID F EDF++ GY+PH I+M+MAV
Sbjct: 261 IQLQREPRPFPKLKILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307
>pdb|3EAW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALXQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|1RTS|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|C Chain C, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|D Chain D, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
Length = 307
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/301 (63%), Positives = 233/301 (77%)
Query: 227 EVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFP 286
E++ + P+ +H E YLR V+ I+ G K+DRTGTGTLS FG Q RY+LR FP
Sbjct: 7 ELQSGAQQPRTEAPQHGELQYLRQVEHIMRCGFKKEDRTGTGTLSVFGMQARYSLRDEFP 66
Query: 287 LLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLG 346
LLTTK+VFW+GV+EELLWFI GSTNAK L K + IWD N SR++LDS+G + R+EGDLG
Sbjct: 67 LLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLG 126
Query: 347 PVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMAL 406
PVYGFQWRHFGA Y +M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMAL
Sbjct: 127 PVYGFQWRHFGADYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMAL 186
Query: 407 PPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVI 466
PPCH QFY+ NGELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDF+H +
Sbjct: 187 PPCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTL 246
Query: 467 GDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 526
GDAH+Y NH+ PL+ QLQ+ P+PFP L+I + + ID F EDF++ GY+PH I+M+MA
Sbjct: 247 GDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVETIDDFKVEDFQIEGYNPHPTIKMEMA 306
Query: 527 V 527
V
Sbjct: 307 V 307
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of
Chemotherapy With Noncompetitive Inhibitors
Length = 355
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 70 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 129
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 130 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 189
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 190 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPCHALXQFYVVNSE 249
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 250 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 309
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 310 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|B Chain B, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|C Chain C, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|D Chain D, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
Length = 288
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 3 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 62
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 63 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 122
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 123 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 182
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 183 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 242
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 243 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>pdb|2RD8|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|C Chain C, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|D Chain D, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|E Chain E, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|F Chain F, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|3H9K|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3OB7|A Chain A, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|B Chain B, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|C Chain C, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|D Chain D, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|E Chain E, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
Length = 313
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3GH2|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|B Chain B, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|C Chain C, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|D Chain D, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|A Chain A, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|B Chain B, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|C Chain C, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|D Chain D, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
Length = 313
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVEKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EF9|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GH0|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3GG5|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EDW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|4GYH|A Chain A, Structure Of Human Thymidylate Synthase At High Salt
Conditions
pdb|4H1I|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|B Chain B, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|C Chain C, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|D Chain D, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
Length = 318
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3ED7|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 295
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 10 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 69
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 70 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 129
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N E
Sbjct: 130 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 189
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 190 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 249
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 250 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295
>pdb|3N5G|A Chain A, Crystal Structure Of Histidine-Tagged Human Thymidylate
Synthase
Length = 325
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 40 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 99
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 100 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 159
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPP H QFY+ N E
Sbjct: 160 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALXQFYVVNSE 219
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 220 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 279
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 280 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|3N5E|A Chain A, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 40 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 99
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 100 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 159
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPP H QFY+ N E
Sbjct: 160 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSE 219
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 220 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 279
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 280 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests
Advantages Of Chemotherapy With Noncompetitive
Inhibitors
pdb|1YPV|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|2ONB|A Chain A, Human Thymidylate Synthase At Low Salt Conditions With
Pdpa Bound
Length = 313
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPP H QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALXQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EHI|X Chain X, Crystal Structure Of Human Thymidyalte Synthase M190k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL L ALPPCH QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLKALPPCHALXQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EBU|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPP H QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3N5E|B Chain B, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 40 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 99
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 100 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 159
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPP H QFY+ N E
Sbjct: 160 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPXHALCQFYVVNSE 219
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 220 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 279
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 280 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase
pdb|1HZW|B Chain B, Crystal Structure Of Human Thymidylate Synthase
pdb|1I00|A Chain A, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
pdb|1I00|B Chain B, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
Length = 290
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/284 (66%), Positives = 224/284 (78%)
Query: 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EELL
Sbjct: 7 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELL 66
Query: 304 WFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNM 363
WFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y +M
Sbjct: 67 WFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDM 126
Query: 364 HADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELS 423
+DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N ELS
Sbjct: 127 ESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELS 186
Query: 424 CQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483
CQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+ QL
Sbjct: 187 CQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQL 246
Query: 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
Q+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 247 QREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 290
>pdb|4E28|A Chain A, Structure Of Human Thymidylate Synthase In Inactive
Conformation With A Novel Non-Peptidic Inhibitor
Length = 325
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 40 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 99
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 100 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 159
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPP H QFY+ N E
Sbjct: 160 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSE 219
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 220 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 279
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 280 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|2RD8|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
Length = 313
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPP H QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPXHALCQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EGY|X Chain X, Crystal Structure Of Human Thymidyalte Synthase A191k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/286 (66%), Positives = 223/286 (77%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+EE
Sbjct: 28 HGELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYT 361
LLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 362 NMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE 421
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LM LPP H QFY+ N E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMKLPPXHALXQFYVVNSE 207
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481
LSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 268 QLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1CI7|B Chain B, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1F28|A Chain A, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|B Chain B, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|C Chain C, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|D Chain D, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
Length = 297
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 182/293 (62%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFG-CQMRYNLRT-TFPLLTTKKVFWRGVVE 300
EE YL LVQ II+ G + DRTGTGTLS F ++++LR TFPLLTTK+VF RGV+E
Sbjct: 5 EEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIE 64
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARY 360
ELLWFI G T++ L+EK+IHIWD N SREYLDS+GLT R+EGDLGP+YGFQWRHFGA Y
Sbjct: 65 ELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEY 124
Query: 361 TNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM--- 417
+ +Y GQG DQL ++I KI+ +P DRR++LSAWNP+DL+ MALPPCHMF QFY+
Sbjct: 125 IDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIP 184
Query: 418 ---ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRN 474
ELSCQ+YQRS DMGLGVPFNIASYALLTCMIAHVCDL PGDFIHV+GD H+Y++
Sbjct: 185 SNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKD 244
Query: 475 HVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
H+ L++QL + P+PFP L +N DI+ F +DF + Y P++ I+MKM++
Sbjct: 245 HIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3J|C Chain C, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|D Chain D, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3K|C Chain C, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|D Chain D, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|C Chain C, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|D Chain D, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DGA|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 328
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 166/296 (56%), Positives = 214/296 (72%)
Query: 231 FSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTT 290
F + ++ H EY YL ++ DI+ +GN + DRTG G LSKFG M+++L FPLLTT
Sbjct: 32 FQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTT 91
Query: 291 KKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYG 350
KK+F RG++EELLWFI G TN L K++ IW+ N +RE+LD+ L RE DLGP+YG
Sbjct: 92 KKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYG 151
Query: 351 FQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCH 410
FQWRHFGA YTNM+ +Y +G DQL ++IN IKN+P RRI+L AWN DL MALPPCH
Sbjct: 152 FQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCH 211
Query: 411 MFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 470
+ QFY+ +G+LSC MYQRS D+GLGVPFNIASY++ T MIA VC+L P FIHV+G+AH
Sbjct: 212 ILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAH 271
Query: 471 VYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 526
VY NH+ L+ QL ++P PFP LK+NP+ K+I+ F DF + Y H+KI M MA
Sbjct: 272 VYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 327
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 177/300 (59%), Positives = 217/300 (72%), Gaps = 14/300 (4%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLR-TTFPLLTTKKVFWRGVV 299
HEEY YL L++ II+ G ++ DRTGTGT++ F R++L T PLLTTK+VF RGV+
Sbjct: 18 HEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVI 77
Query: 300 EELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGAR 359
ELLWF+SG T+AK+L + + IWDGN S+E+L+ VGL R EGDLGPVYGFQWRHFGA
Sbjct: 78 AELLWFVSGCTDAKMLSSQGVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAE 137
Query: 360 YTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM-- 417
YT+ DY G+G DQL VI+ IKNNP DRRI+LSAWNP DL LMALPPCHMF QF++
Sbjct: 138 YTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSL 197
Query: 418 -------ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 470
+ +LSC MYQRS D+GLGVPFNIASYALLT MIA + D P +FI +GDAH
Sbjct: 198 PPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAH 257
Query: 471 VYRNHVRPLEEQLQKLPKPFPILKINPEKK---DIDSFVAEDFKLIGYDPHQKIEMKMAV 527
VYR+HV PL+ QL++ P+ FP LK K+ DID F EDF + GY P KI+MKM+
Sbjct: 258 VYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMSA 317
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM
ENCEPHALITOZOON Cuniculi At 2.2 A Resolution
Length = 294
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/290 (56%), Positives = 221/290 (76%), Gaps = 4/290 (1%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLR-TTFPLLTTKKVFWRGVV 299
+H E+ YL LV+ I+ +G + DRTGTGTLS FG MR++L TFPLLTT++VF+RGVV
Sbjct: 6 RHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVV 65
Query: 300 EELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGAR 359
EELL+F+ G T++KVL++K + IW+ N ++++L SVG+ DREEGDLGP+YGFQWRHFGAR
Sbjct: 66 EELLFFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHFGAR 124
Query: 360 YTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMAN 419
Y + Y G+G DQ+ I I+ NP RRIV+SAWNP+DL MALPPCH+ QF + +
Sbjct: 125 YETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGSMALPPCHVLFQFNVTD 184
Query: 420 GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479
G+LSC MYQRS DMGLGVPFNIASY+LLT ++AH+ L PG+F+H +GDAHVY +HV L
Sbjct: 185 GKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSL 244
Query: 480 EEQLQKLPKPFPILKINPE--KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+Q+Q+ P+ FP L ++P+ + + + F EDF+L+GYDPH I+M M+
Sbjct: 245 RQQIQRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMSA 294
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 290 bits (743), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/295 (49%), Positives = 190/295 (64%), Gaps = 25/295 (8%)
Query: 238 VFEKHEEYL-----YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKK 292
+ E H E + YL L+Q ++ G +DDRTGTGT S FG QMR++L FP+LTTKK
Sbjct: 86 IIEAHREQIGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKK 145
Query: 293 VFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQ 352
+ R ++ ELLWF+ G TN L+E + IWD E+ D E GDLGPVYG+Q
Sbjct: 146 LHLRSIIHELLWFLKGDTNIAYLKENGVTIWD-----EWAD-------ENGDLGPVYGYQ 193
Query: 353 WRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMF 412
WR + A G+ DQ+ +++ + NP RR+++SAWNP+ + MALPPCH
Sbjct: 194 WRSWPAP--------DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCL 245
Query: 413 AQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVY 472
QFY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V L PG+FIH +GDAH+Y
Sbjct: 246 FQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIY 305
Query: 473 RNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
NH QL + PK P++ INP+ KD+ +F EDF+L GY+ I+ +AV
Sbjct: 306 SNHFEQARLQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 360
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|C Chain C, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 281 bits (718), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 195/322 (60%), Gaps = 46/322 (14%)
Query: 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
E YL L + I+ +G+ K+DRTGTGT S FG QMR++L FPLLTTK+V + + ELL
Sbjct: 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELL 61
Query: 304 WFISGSTNAKVLQEKDIHIWDGNASREYLDSV-----GLTD---------------REE- 342
WF+ G TN + L E++ HIWD A Y+ S +TD +EE
Sbjct: 62 WFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEH 121
Query: 343 -----------------GDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNN 385
G+LG +YG QWRH+ + G DQL +VI IK N
Sbjct: 122 QKFCDAILNDAEFAEKYGELGNIYGAQWRHWETK--------DGSFIDQLANVIEMIKTN 173
Query: 386 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYA 445
P+ RR+++SAWNP D+ MALPPCH QFY+ G+LSCQ+YQRSAD+ LGVPFNIASYA
Sbjct: 174 PDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYA 233
Query: 446 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSF 505
LLT +IAH L G+F+H +GDAH+Y+NHV ++EQL + + FP L +NP+K + F
Sbjct: 234 LLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDF 293
Query: 506 VAEDFKLIGYDPHQKIEMKMAV 527
ED K+ GYDPH I+ +AV
Sbjct: 294 DMEDIKVEGYDPHPTIKAPIAV 315
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|D Chain D, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/322 (45%), Positives = 194/322 (60%), Gaps = 46/322 (14%)
Query: 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
E YL L + I+ +G+ K+DRTGTGT S FG QMR++L FPLLTTK+V + + ELL
Sbjct: 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELL 61
Query: 304 WFISGSTNAKVLQEKDIHIWDGNASREYLDSV-----GLTD---------------REE- 342
WF+ G TN + L E++ HIWD A Y+ S +TD +EE
Sbjct: 62 WFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEH 121
Query: 343 -----------------GDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNN 385
G+LG +YG QWRH+ + G DQL +VI IK N
Sbjct: 122 QKFCDAILNDAEFAEKYGELGNIYGAQWRHWETK--------DGSFIDQLANVIEMIKTN 173
Query: 386 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYA 445
P+ RR+++SAWNP D+ MALPP H QFY+ G+LSCQ+YQRSAD+ LGVPFNIASYA
Sbjct: 174 PDSRRLIVSAWNPEDVPSMALPPXHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYA 233
Query: 446 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSF 505
LLT +IAH L G+F+H +GDAH+Y+NHV ++EQL + + FP L +NP+K + F
Sbjct: 234 LLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDF 293
Query: 506 VAEDFKLIGYDPHQKIEMKMAV 527
ED K+ GYDPH I+ +AV
Sbjct: 294 DMEDIKVEGYDPHPTIKAPIAV 315
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1KCE|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1TLS|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1TLS|B Chain B, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1F4B|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
pdb|1F4C|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4C|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4E|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Tosyl-D-Proline
pdb|1F4F|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1F4F|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1JTQ|A Chain A, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTQ|B Chain B, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTU|A Chain A, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JTU|B Chain B, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JUT|A Chain A, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1JUT|B Chain B, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1KZI|A Chain A, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|1KZI|B Chain B, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|2A9W|A Chain A, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|B Chain B, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|C Chain C, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|D Chain D, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2FTQ|A Chain A, E. Coli Thymidylate Synthase At 1.8 A Resolution
pdb|1TSN|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|3B9H|A Chain A, E. Coli Thymidylate Synthase Complexed With
5-Nitro-2'-Deoxy Uridine
pdb|3BHL|A Chain A, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHL|B Chain B, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHR|A Chain A, E. Coli Ts Complexed With 5-No2dump And Tetrahydrofolate
At 1.9 A Resolution (Space Group 152)
pdb|4IW5|A Chain A, Thymidylate Synthase Ternary Complex With Dump And Cb3717
pdb|4IW5|B Chain B, Thymidylate Synthase Ternary Complex With Dump And Cb3717
Length = 264
Score = 275 bits (702), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TLC|B Chain B, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TSD|A Chain A, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1TSD|B Chain B, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1DDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1DDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1TDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1TDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1AN5|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AN5|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AXW|A Chain A, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1AXW|B Chain B, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BDU|A Chain A, E. Coli Thymidylate Synthase Complexed With Durd
pdb|1BID|A Chain A, E. Coli Thymidylate Synthase Complexed With Dump
pdb|1TJS|A Chain A, E. Coli Thymidylate Synthase
pdb|1TRG|A Chain A, E. Coli Thymidylate Synthase In Symmetric Complex With
Cb3717 And 2'- Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|A Chain A, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|B Chain B, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 265
Score = 274 bits (701), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 5 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 64
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 65 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 105
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 106 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 164
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 165 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 224
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 225 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 265
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2BBQ|B Chain B, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2KCE|A Chain A, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|2KCE|B Chain B, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|3TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|1AOB|A Chain A, E. Coli Thymidylate Synthase Complexed With Ddurd
Length = 264
Score = 274 bits (701), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
pdb|2TSC|B Chain B, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
Length = 264
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRAPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
pdb|1F4G|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
Length = 264
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMXAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
pdb|2VF0|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
Length = 264
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TT++ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTQRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1ZPR|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 264
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ +LLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHQLLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With Dump
pdb|3B5B|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
pdb|3B5B|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Length = 264
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TT++ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTQRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant
pdb|2FTO|X Chain X, Y94f Mutant Of Thymidylate Synthase Bound To
Thymidine-5'-Phosphate And 10-Propargyl-5,8-Dideazafolid
Acid
Length = 264
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPV+G QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVFGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q
Mutant
pdb|1FWM|A Chain A, Crystal Structure Of The Thymidylate Synthase R166q Mutant
pdb|1FWM|B Chain B, Crystal Structure Of The Thymidylate Synthase R166q Mutant
Length = 264
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQ+S D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQQSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2G8M|A Chain A, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8M|B Chain B, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8X|A Chain A, Escherichia Coli Y209w Apoprotein
pdb|2G8X|B Chain B, Escherichia Coli Y209w Apoprotein
pdb|4GEV|A Chain A, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
pdb|4GEV|B Chain B, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
Length = 264
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H++ NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLWSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1DNA|B Chain B, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1BJG|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
Length = 264
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 183/281 (65%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS ++ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCNVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AIQ|B Chain B, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AJM|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
Length = 264
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSERIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ1|B Chain B, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ2|A Chain A, E. Coli Thymidylate Synthase Mutant N177a
Length = 264
Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PF IASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFAIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With
5-nitro-dump
Length = 264
Score = 271 bits (694), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+ NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLMSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
pdb|1JG0|B Chain B, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
Length = 264
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 181/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+D TGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDATGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGAHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
pdb|1NCE|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
Length = 264
Score = 271 bits (693), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS + LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCCVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With
Dtmp And Mtf
pdb|1TYS|A Chain A, Water-Mediated Substrate(Slash)product Discrimination: The
Product Complex Of Thymidylate Synthase At 1.83
Angstroms
Length = 264
Score = 271 bits (692), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL P H F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPSHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EVG|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli With Unmodified Catalytic Cysteine
Length = 264
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQR+ D+ LG+PFNIASYALL M+A DL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRTCDVFLGLPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|B Chain B, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|C Chain C, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|D Chain D, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|E Chain E, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|F Chain F, Crystal Structure Of Ects W80g/dump/cb3717 Complex
Length = 264
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ I D E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIGD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EV5|A Chain A, Crystal Structure Analysis Of Ala167 Mutant Of Escherichia
Coli
Length = 264
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 182/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQR+ D+ LG+PFNIASYALL M+A DL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRAXDVFLGLPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Cb3717
pdb|1LCB|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dtmp And H2folate
pdb|1LCE|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Ch2thf
pdb|1NJE|A Chain A, Thymidylate Synthase With 2'-Deoxycytidine
5'-Monophosphate (Dcmp)
pdb|1THY|A Chain A, Refined Structures Of Substrate-Bound And Phosphate-Bound
Thymidylate Synthase From Lactobacillus Casei
pdb|1TSL|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|1TSM|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|2TDM|A Chain A, Structure Of Thymidylate Synthase
pdb|4TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|3BNZ|A Chain A, Crystal Structure Of Thymidylate Synthase Ternary Complex
With Dump And 8a Inhibitor
pdb|3BYX|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00 In Multiple
Binding Modes
pdb|3BZ0|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00
pdb|3C06|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 1
pdb|3C0A|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 2
pdb|3IJZ|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Pthalimidic Derivative 15c
pdb|3IK0|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 7c1
pdb|3IK1|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 20c
Length = 316
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
pdb|1F4D|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
Length = 264
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 181/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MA P H F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMACAPSHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Dump
pdb|1VZC|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Fdump
pdb|1VZD|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Fdump And Cb3717
pdb|1VZE|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Dump And Cb3717
Length = 316
Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + +LLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSQLLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKAPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant
pdb|1TSZ|A Chain A, Thymidylate Synthase R179k Mutant
Length = 316
Score = 268 bits (685), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
R++++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RKLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'-
Deoxyuridine 5'-Monophosphate (Dump)
Length = 316
Score = 268 bits (685), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + +LLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSDLLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKAPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With
Substrate, Dump
Length = 316
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH++ NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLFVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDB|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDC|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|2TDD|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
Length = 315
Score = 268 bits (684), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 190/318 (59%), Gaps = 46/318 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMA 526
D KL+ YDP+ I+ +A
Sbjct: 298 DIKLLNYDPYPAIKAPVA 315
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With
2'-Deoxycytidine 5'- Monophosphate (Dcmp)
pdb|1NJD|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxyuridine
5'- Monophosphate (Dump)
Length = 316
Score = 268 bits (684), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPF+IASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFDIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump
Complex
Length = 316
Score = 267 bits (683), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH++ NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLWVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVW|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 191/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPF+IASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFSIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant
Length = 316
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
R +++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RELIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant
Length = 316
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
R +++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RTLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant
Length = 316
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
R+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 TRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPF IASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFGIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant
pdb|1TSW|A Chain A, Thymidylate Synthase R179a Mutant
Length = 316
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
R +++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RALIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVU|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPF IASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFAIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump
Length = 316
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+ NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLMVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With
Substrate, Dump
Length = 316
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/322 (45%), Positives = 191/322 (59%), Gaps = 46/322 (14%)
Query: 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
E YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 304 WFISGSTNAKVLQEKDIHIWDGNASREYLDS----------------------------- 334
WF+ G TN + L + HIWD A +++ S
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 335 VGLTDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNN 385
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTH 174
Query: 386 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYA 445
P RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYA
Sbjct: 175 PYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYA 234
Query: 446 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSF 505
LLT ++AH C L G+FIH GDAH+ NH+ ++EQL + P+P P L++NP+K DI F
Sbjct: 235 LLTHLVAHECGLEVGEFIHTFGDAHLAVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDF 294
Query: 506 VAEDFKLIGYDPHQKIEMKMAV 527
+D KL+ YDP+ I+ +AV
Sbjct: 295 DMKDIKLLNYDPYPAIKAPVAV 316
>pdb|1EVF|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/281 (47%), Positives = 181/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL P H F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQR+ D+ LG+PFNIASYALL M+A DL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRTXDVFLGLPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant
Length = 316
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K D T TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDITHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPF IASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFIIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With
2'-deoxycytidine 5'- Monophosphate (dcmp)
pdb|1NJB|A Chain A, Thymidylate Synthase
pdb|1TVV|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 190/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPF IASYALLT
Sbjct: 178 RRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFCIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 134/281 (47%), Positives = 180/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL P H F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQR D+ LG+PFNIASYALL M+A DL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRCXDVFLGLPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant
Length = 316
Score = 264 bits (675), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 189/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
+++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 TTLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|1QQQ|A Chain A, Crystal Structure Analysis Of Ser254 Mutant Of Escherichia
Coli Thymidylate Synthase
Length = 264
Score = 264 bits (674), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 134/281 (47%), Positives = 180/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD E+ D E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL P H F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A DL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSXDVFLGLPFNIASYALLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYD H I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDSHPGIKAPVAI 264
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant
Length = 316
Score = 263 bits (673), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 189/319 (59%), Gaps = 46/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L + ++ +G+ K D T TGT S FG QMR++L FPLLTTKKV + + ELLWF+
Sbjct: 6 YLDLAKKVLDEGHFKPDITHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-----------------------------VGL 337
G TN + L + HIWD A +++ S
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 338 TDR---------EEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
DR + GDLG VYG QWR A +T+ G DQL DVI +IK +P
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWR---AWHTS-----KGDTIDQLGDVIEQIKTHPYS 177
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
R +++SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT
Sbjct: 178 RTLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLT 237
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
++AH C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D KL+ YDP+ I+ +AV
Sbjct: 298 DIKLLNYDPYPAIKAPVAV 316
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus.
pdb|4DQ1|B Chain B, Thymidylate Synthase From Staphylococcus Aureus
Length = 321
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 188/319 (58%), Gaps = 47/319 (14%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
Y L ++++ GN ++DRT TGT+SKFG Q+R++L FPLLTTKKV ++ V ELLWFI
Sbjct: 12 YHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFI 71
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDS-------------VGLTD-------------- 339
G TN + L + + +IW+ A Y+ S L+D
Sbjct: 72 KGDTNIQYLLKYNNNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQF 131
Query: 340 -----------REEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPND 388
++ GDLG VYG QWR + D G FDQL VI +IK+NP+
Sbjct: 132 KQRILEDDTFAKQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPDS 183
Query: 389 RRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLT 448
RR ++SAWNP+++ MALPPCH QFY+ +G+LSCQ+YQRSAD+ LGVPFNIASYALLT
Sbjct: 184 RRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLT 243
Query: 449 CMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAE 508
+IA C L G+F+H GDAH+Y NH+ ++ QL + P LKIN +K D E
Sbjct: 244 HLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSIFD-INYE 302
Query: 509 DFKLIGYDPHQKIEMKMAV 527
D +++ Y+ H I+ +AV
Sbjct: 303 DLEIVDYESHPAIKAPIAV 321
>pdb|3QJ7|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
Length = 264
Score = 254 bits (650), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 177/281 (62%), Gaps = 21/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
Y L++ ++ G K DRTGTGT S FG QMRY+L FPLLTTKKV ++ V ELLWF+
Sbjct: 5 YEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFL 64
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G +N L E + IWD AS + G+LGP+YG QWR + A
Sbjct: 65 RGDSNIGWLHEHGVTIWDEWAS------------DTGELGPIYGVQWRSWPAP------- 105
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
SG+ DQ+ ++ ++ +P+ RRI++SAWN +++ MALPPCH F QFY+A+G LSCQ+
Sbjct: 106 -SGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQL 164
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRSAD+ LGVPFNIASYALLT M+A L+ G+FI GD H+Y NHV + QL +
Sbjct: 165 YQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSRE 224
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P+P L + ++ I + ED + YDPH I+ +AV
Sbjct: 225 PRPYPKLLLA-DRDSIFEYTYEDIVVKNYDPHPAIKAPVAV 264
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage
Length = 286
Score = 241 bits (615), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 177/300 (59%), Gaps = 36/300 (12%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
Y L++DI +G DDRTGTGT++ FG ++R++L FP +TTKK+ W+ + EL+WF+
Sbjct: 4 YQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFL 63
Query: 307 SGSTNA---KVLQEKDI----HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGAR 359
SGSTN +++Q + +WD N + D G+LGP+YG QWR FG
Sbjct: 64 SGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKD----LGYHSGELGPIYGKQWRDFG-- 117
Query: 360 YTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMAN 419
G DQ+++VI++IK PNDRR ++SAWNP++LK MALPPCHMF QF + N
Sbjct: 118 -----------GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRN 166
Query: 420 GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479
G L Q YQRS D+ LG+PFNIASYA L ++A +C+L PGD I G+ H+Y NHV
Sbjct: 167 GYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQC 226
Query: 480 EEQLQK------------LPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+E L++ LP F L + K + +DF L Y H I+ KMAV
Sbjct: 227 KEILRREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>pdb|4F2V|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
pdb|4F2V|B Chain B, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
Length = 272
Score = 238 bits (608), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/281 (44%), Positives = 169/281 (60%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L Q ++ +G K+DRTGTGTLS FG Q R+NL+ FPL+TTK+ R ++ LLWF+
Sbjct: 4 YLELXQKVLDEGTQKNDRTGTGTLSIFGHQXRFNLQDGFPLVTTKRCHLRSIIHLLLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ I D E+ D E GDLGPV+G QWR +
Sbjct: 64 QGDTNIAYLHENNVTILD-----EWAD-------ENGDLGPVHGKQWRAWPTP------- 104
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L A P H F QFY+A+G+LSCQ+
Sbjct: 105 -DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKXANAPSHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
Y RS D+ L +PF IAS ALL A CDL GDF+ GD H+Y NH QL +
Sbjct: 164 YARSEDVFLSLPFAIASGALLVHXXAQQCDLEVGDFVXTGGDTHLYSNHXDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 157/292 (53%), Gaps = 31/292 (10%)
Query: 247 YLRLVQDIISDG--------NLKDDRTGT--GTLSKFGCQMRYNLRTTFPLLTTKKVFWR 296
Y +++DII++G K D GT TLS QMR++ + P+LTTKKV W+
Sbjct: 8 YNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAWK 66
Query: 297 GVVEELLWFIS-GSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRH 355
++ELLW S + L +HIWD +E+G +G YGFQ
Sbjct: 67 TAIKELLWIWQLKSNDVNDLNMMGVHIWDQ------------WKQEDGTIGHAYGFQ--- 111
Query: 356 FGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQF 415
G + ++ +G+ DQ+ +++++KNNP+ RR + WNP +L MAL PC Q+
Sbjct: 112 LGKKNRSL----NGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQW 167
Query: 416 YMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNH 475
Y+ +G+L ++ RS DM LG PFN+ Y +L MIA V G++I IGD HVY H
Sbjct: 168 YVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRH 227
Query: 476 VRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+ L+ Q+++ P L INPE KD F +DFKLI Y K+ ++AV
Sbjct: 228 IDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 279
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 157/292 (53%), Gaps = 31/292 (10%)
Query: 247 YLRLVQDIISDG--------NLKDDRTGT--GTLSKFGCQMRYNLRTTFPLLTTKKVFWR 296
Y +++DII++G K D GT TLS QMR++ + P+LTTKKV W+
Sbjct: 7 YNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAWK 65
Query: 297 GVVEELLWFIS-GSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRH 355
++ELLW S + L +HIWD +E+G +G YGFQ
Sbjct: 66 TAIKELLWIWQLKSNDVNDLNMMGVHIWDQ------------WKQEDGTIGHAYGFQ--- 110
Query: 356 FGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQF 415
G + ++ +G+ DQ+ +++++KNNP+ RR + WNP +L MAL PC Q+
Sbjct: 111 LGKKNRSL----NGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQW 166
Query: 416 YMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNH 475
Y+ +G+L ++ RS DM LG PFN+ Y +L MIA V G++I IGD HVY H
Sbjct: 167 YVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRH 226
Query: 476 VRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+ L+ Q+++ P L INPE KD F +DFKLI Y K+ ++AV
Sbjct: 227 IDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 160/320 (50%), Gaps = 39/320 (12%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL LV+ I+ G + +RTG T+ G +R++L+ FP +TTKK+ ++ + EL+ F+
Sbjct: 8 YLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFL 67
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHF-GARYTNMHA 365
+ +A + +WD NA+ R DLG VYG QWR + G + + HA
Sbjct: 68 RATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYKVLDAHA 127
Query: 366 DY-----SGQGF--------------------DQLLDVINKIKNNPNDRRIVLSAWNPSD 400
D + +GF DQL D ++ I +P+ RRI+ WNP+
Sbjct: 128 DAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFHGWNPAV 187
Query: 401 LKLMALPPCHMFAQFY--MANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLA 458
L +ALP CH+ QF + E+S +Y RS D+GLG PFN+A A L ++ + +
Sbjct: 188 LDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLTGYS 247
Query: 459 PGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKD-----------IDSFVA 507
P F + IGDAH+Y N + L++QL++ P P L++ D ++
Sbjct: 248 PRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLERVEP 307
Query: 508 EDFKLIGYDPHQKIEMKMAV 527
DF L+GY H+ + MAV
Sbjct: 308 SDFTLVGYRHHEPLSAPMAV 327
>pdb|1CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|2CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|3CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|4CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|1E26|A Chain A, Design, Synthesis And X-Ray Crystal Structure Of A Potent
Dual Inhibitor Of Thymidylate Synthase And Dihydrofolate
Reductase As An Antitumor Agent.
pdb|1LY3|A Chain A, Analysis Of Quinazoline And Pyridopyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1LY4|A Chain A, Analysis Of Quinazoline And Pyrido[2,3d]pyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1KLK|A Chain A, Crystal Structure Of Pneumocystis Carinii Dihydrofolate
Reductase Ternary Complex With Pt653 And Nadph
pdb|1S3Y|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|2FZH|A Chain A, New Insights Into Dihydrofolate Reductase Interactions:
Analysis Of Pneumocystis Carinii And Mouse Dhfr
Complexes With Nadph And Two Highly Potent Trimethoprim
Derivatives
pdb|2FZI|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
And Two Highly Potent Trimethoprim Derivatives
pdb|1DAJ|A Chain A, Comparison Of Ternary Complexes Of Pneumocystis Carinii
And Wild Type Human Dihydrofolate Reductase With
Coenzyme Nadph And A Novel Classical Antitumor
Furo[2,3d]pyrimidine Antifolate
pdb|1DYR|A Chain A, The Structure Of Pneumocystis Carinii Dihydrofolate
Reductase To 1.9 Angstroms Resolution
pdb|3NZ6|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZ9|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZA|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZB|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Potent
5-(Omega-Carboxyl(Alkyloxy) Pyrido[2,-D]pyrimidine
Derivatives
pdb|3NZC|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyridine
Derivativea
pdb|3TD8|A Chain A, Structural Analysis Of Pneumocystis Carinii Dihydrofolate
Reductase Complex With Nadph And
2,4-Diamino-5-Methyl-6-[2'-(4-Carboxy-1-
Pentynyl)-5'-Methoxybenzyl]pyrido[2,3-D]pyrimidine
Length = 206
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Query: 19 NPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI--TSDAGKR-NAVIMGRKT 75
N ++S ++VA T GIG+ LPWKL ++ +FK +T T D+ + N V+MGRKT
Sbjct: 2 NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKT 61
Query: 76 WESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELL---AASPYCLSIEK 132
WESIPL+ RPL GR+NVV+TR+ S D+ + S+ ALELL S + I +
Sbjct: 62 WESIPLQFRPLKGRINVVITRNESLDLGN--GIHSAKSLDHALELLYRTYGSESSVQINR 119
Query: 133 VFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIP 170
+FVIGG Q+ A++ P+ D I T I I CD F P
Sbjct: 120 IFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFP 157
>pdb|1VJ3|A Chain A, Structural Studies On Bio-Active Compounds. Crystal
Structure And Molecular Modeling Studies On The
Pneumocystis Carinii Dihydrofolate Reductase Cofactor
Complex With Tab, A Highly Selective Antifolate
Length = 205
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Query: 19 NPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI--TSDAGKR-NAVIMGRKT 75
N ++S ++VA T GIG+ LPWKL ++ +FK +T T D+ + N V+MGRKT
Sbjct: 1 NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKT 60
Query: 76 WESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELL---AASPYCLSIEK 132
WESIPL+ RPL GR+NVV+TR+ S D+ + S+ ALELL S + I +
Sbjct: 61 WESIPLQFRPLKGRINVVITRNESLDLGN--GIHSAKSLDHALELLYRTYGSESSVQINR 118
Query: 133 VFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIP 170
+FVIGG Q+ A++ P+ D I T I I CD F P
Sbjct: 119 IFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFP 156
>pdb|1AI9|A Chain A, Candida Albicans Dihydrofolate Reductase
pdb|1AI9|B Chain B, Candida Albicans Dihydrofolate Reductase
pdb|1AOE|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And
1,3-Diamino-7-(1-Ethyepropye)-7h-Pyrralo-[3,2-
F]quinazoline (Gw345)
pdb|1AOE|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And
1,3-Diamino-7-(1-Ethyepropye)-7h-Pyrralo-[3,2-
F]quinazoline (Gw345)
pdb|1IA1|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(Phenylsulfanyl)-2,4-Quinazolinediamine
(Gw997)
pdb|1IA1|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(Phenylsulfanyl)-2,4-Quinazolinediamine
(Gw997)
pdb|1IA2|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-[(4-Methylphenyl)sulfanyl]-2,4-
Quinazolinediamine (Gw578)
pdb|1IA2|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-[(4-Methylphenyl)sulfanyl]-2,4-
Quinazolinediamine (Gw578)
pdb|1IA3|A Chain A, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5- [(4-Tert-Butylphenyl)sulfanyl]-2,4-Quinazolinediamine
(Gw995)
pdb|1IA3|B Chain B, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5- [(4-Tert-Butylphenyl)sulfanyl]-2,4-Quinazolinediamine
(Gw995)
pdb|1IA4|A Chain A, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5-
{[4-(4-Morpholinyl)phenyl]sulfanyl}-2,
4-Quinazolinediamin (Gw2021)
pdb|1IA4|B Chain B, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5-
{[4-(4-Morpholinyl)phenyl]sulfanyl}-2,
4-Quinazolinediamin (Gw2021)
pdb|1M78|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-Chloryl-2,4,6-Quinazolinetriamine (Gw1225)
pdb|1M78|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-Chloryl-2,4,6-Quinazolinetriamine (Gw1225)
pdb|1M79|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(4-Methoxyphenoxy)-2,4-Quinazolinediamine
(Gw1466)
pdb|1M79|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(4-Methoxyphenoxy)-2,4-Quinazolinediamine
(Gw1466)
pdb|1M7A|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 7-[2-Methoxy-1-(Methoxymethyl)ethyl]-7h-
Pyrrolo[3,2-F] Quinazoline-1,3-Diamine (Gw557)
pdb|1M7A|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 7-[2-Methoxy-1-(Methoxymethyl)ethyl]-7h-
Pyrrolo[3,2-F] Quinazoline-1,3-Diamine (Gw557)
pdb|3QLR|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLR|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLS|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLS|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLW|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Ethylpyrimidine-2,
4-Diamine (Ucp120b)
pdb|3QLW|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Ethylpyrimidine-2,
4-Diamine (Ucp120b)
Length = 192
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 12/154 (7%)
Query: 21 KRSYQVVVAATRD-MGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI 79
K + ++VAA + +GIG GK+PW+L ++++FK++T T+ RNAVIMGRKTWESI
Sbjct: 3 KPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESI 62
Query: 80 PLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGG 139
P + RPLP RLN++L+RS +I +N++ SI S+L L++ +E+VF+IGG
Sbjct: 63 PQKFRPLPDRLNIILSRSYENEIID-DNIIHASSIESSLNLVS------DVERVFIIGGA 115
Query: 140 QILSEALNAPECDAIHITEIE----TRIECDTFI 169
+I +E +N + ITEIE IE DTF+
Sbjct: 116 EIYNELINNSLVSHLLITEIEHPSPESIEMDTFL 149
>pdb|3RO9|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-1-
Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3RO9|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-1-
Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3ROA|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Morpholin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1004)
pdb|3ROA|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Morpholin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1004)
Length = 225
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 9/151 (5%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
+V A +MGIG G LPW+L ++K+F+E+T +T+D K+N VIMGRKTWESIP + RP
Sbjct: 7 IVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRP 66
Query: 86 LPGRLNVVLTRSGSFDIATVENVVI-CGSIGSALELLAASPYCLS-IEKVFVIGGGQILS 143
LP R+NVV++RS ++ VE+ + S+ + L L +S + IE++++IGGG+I
Sbjct: 67 LPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYR 126
Query: 144 EALNAPECDAIHITEI----ETRI-ECDTFI 169
++++ D IT+I ET I + DTF+
Sbjct: 127 QSMDL--ADHWLITKIMPLPETTIPQMDTFL 155
>pdb|3CSE|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3CSE|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3EEJ|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-Phenylphenyl)prop-1-
Ynyl]-6-Methylpyrimidine(Ucp111d) And Nadph
pdb|3EEJ|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-Phenylphenyl)prop-1-
Ynyl]-6-Methylpyrimidine(Ucp111d) And Nadph
pdb|3EEK|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(4-
Methylphenyl)phenyl)
Prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d4m) And Nadph
pdb|3EEK|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(4-
Methylphenyl)phenyl)
Prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d4m) And Nadph
pdb|3EEL|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(3,5-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp11153tm) And
Nadph
pdb|3EEL|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(3,5-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp11153tm) And
Nadph
pdb|3EEM|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(2,6-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d26m) And
Nadph
pdb|3EEM|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(2,6-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d26m) And
Nadph
pdb|3QLX|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLX|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLY|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLY|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLZ|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Propylpyrimidine-2,
4- Diamine (Ucp130b)
pdb|3QLZ|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Propylpyrimidine-2,
4- Diamine (Ucp130b)
Length = 227
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 9/151 (5%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
+V A +MGIG G LPW+L ++K+F+E+T +T+D K+N VIMGRKTWESIP + RP
Sbjct: 9 IVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRP 68
Query: 86 LPGRLNVVLTRSGSFDIATVENVVI-CGSIGSALELLAASPYCLS-IEKVFVIGGGQILS 143
LP R+NVV++RS ++ VE+ + S+ + L L +S + IE++++IGGG+I
Sbjct: 69 LPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYR 128
Query: 144 EALNAPECDAIHITEI----ETRI-ECDTFI 169
++++ D IT+I ET I + DTF+
Sbjct: 129 QSMDL--ADHWLITKIMPLPETTIPQMDTFL 157
>pdb|2FZJ|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
And Two Highly Potent Trimethoprim Derivatives
pdb|3D80|A Chain A, Structural Analysis Of A Holo Enzyme Complex Of Mouse
Dihydrofolate Reductase With Nadph And A Ternary Complex
Wtih The Potent And Selective Inhibitor
2,4-Diamino-6-(2'-Hydroxydibenz[b,F]azepin-5-Yl)
Methylpteridine
pdb|3D84|X Chain X, Structural Analysis Of A Holo Enzyme Complex Of Mouse
Dihydrofolate Reductase With Nadph And A Ternary Complex
With The Potent And Selective Inhibitor
2.4-Diamino-6-(-2'-Hydroxydibenz[b,F]azepin-5-
Yl)methylpteridine
pdb|3K47|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
Of 2,4- Diaminofuro[2,3-D]pyrimidines As Ternary
Complexes With Nadph And Mouse Dihydrofolate Reductase
Length = 186
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 10/184 (5%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP 80
R +VA +++MGIGK+G LPW L ++ K+F+ +T +S GK+N VIMGRKTW SIP
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 81 LEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQ 140
++RPL R+N+VL+R + S+ AL L+ ++ V+++GG
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAH--FLAKSLDDALRLIEQPELASKVDMVWIVGGSS 119
Query: 141 ILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYC 194
+ EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 120 VYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYK-LLPEYPGVLSEVQEEKGIKYK 178
Query: 195 LSTY 198
Y
Sbjct: 179 FEVY 182
>pdb|3K45|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
Of 2,4- Diaminofuro[2,3d]pyrimidines As Ternary
Complexes With Nadph And Mouse Dihydrofolate Reductase
Length = 186
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 10/184 (5%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP 80
R +VA +++MGIGK+G LPW L ++ K+F+ +T +S GK+N VIMGRKTW SIP
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 81 LEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQ 140
++RPL R+N+VL+R + S+ AL L+ ++ V+++GG
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAH--FLAKSLDDALRLIEQPDLASKVDMVWIVGGSS 119
Query: 141 ILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYC 194
+ EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 120 VYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYK-LLPEYPGVLSEVQEEKGIKYK 178
Query: 195 LSTY 198
Y
Sbjct: 179 FEVY 182
>pdb|1DR1|A Chain A, 2.2 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Nadp+ And
Biopterin
pdb|1DR2|A Chain A, 2.3 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Thionadp+ And
Biopterin
pdb|1DR3|A Chain A, 2.3 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Thionadp+ And
Biopterin
pdb|1DR4|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR5|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR6|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR7|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|8DFR|A Chain A, Refined Crystal Structures Of Chicken Liver Dihydrofolate
Reductase. 3 Angstroms Apo-Enzyme And 1.7 Angstroms
Nadph Holo-Enzyme Complex
Length = 189
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP 80
RS +VA ++MGIGKDG LPW L ++ K+F+ +T + GK+NAVIMG+KTW SIP
Sbjct: 2 RSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIP 61
Query: 81 LEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQ 140
++RPL R+N+VL+R A + S+ AL LL + ++ V+++GG
Sbjct: 62 EKNRPLKDRINIVLSR--ELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTA 119
Query: 141 ILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYC 194
+ A+ P + +T I E DTF P ID F+ + +P V E+ I+Y
Sbjct: 120 VYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFK-LLTEYPGVPADIQEEDGIQYK 178
Query: 195 LSTYVR 200
Y +
Sbjct: 179 FEVYQK 184
>pdb|3F8Y|A Chain A, Correlations Of Human Dihydrofolate Reductase With
Structural Data For Human Active Site Mutant Enzyme
Complexes
pdb|3GI2|A Chain A, Human Dihydrofolate Reductase Q35k Mutant Inhibitor
Complex
Length = 187
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++FK +T +S GK+N VIMG+KTW SIP
Sbjct: 4 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPE 63
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 64 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 121
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 122 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 180
Query: 196 STY 198
Y
Sbjct: 181 EVY 183
>pdb|3L3R|A Chain A, Structural, Computational And Kinetic Data For Antifolate
Interactions Against Pneumocystis Jirovecii,
Pneumocystis Carinii And Human Dihydrofolate Reductase
And Their Active Site Mutants
Length = 186
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++FK +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|3RG9|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
pdb|3RG9|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
Length = 240
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 22/163 (13%)
Query: 20 PKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT------QITSDAGKRNAVIMGR 73
P R + VVVA+ GIG G +PW++P D+++F+ +T + KRNAV+MGR
Sbjct: 25 PLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGR 84
Query: 74 KTWESIPLEHRPLPGRLNVVLTRSGSFDI-------------ATVENVVICGSIGSALEL 120
KTW+S+P + RPL RLNVVL+RS + + A + V + G + AL +
Sbjct: 85 KTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRM 144
Query: 121 LAASPYCLSIEKVFVIGGGQILSEALNAPECD---AIHITEIE 160
L + + SIE VF IGGG I +AL AP + AIH T +
Sbjct: 145 LVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVR 187
>pdb|3QFX|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
pdb|3QFX|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
Length = 241
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 22/163 (13%)
Query: 20 PKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT------QITSDAGKRNAVIMGR 73
P R + VVVA+ GIG G +PW++P D+++F+ +T + KRNAV+MGR
Sbjct: 25 PLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGR 84
Query: 74 KTWESIPLEHRPLPGRLNVVLTRSGSFDI-------------ATVENVVICGSIGSALEL 120
KTW+S+P + RPL RLNVVL+RS + + A + V + G + AL +
Sbjct: 85 KTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRM 144
Query: 121 LAASPYCLSIEKVFVIGGGQILSEALNAPECD---AIHITEIE 160
L + + SIE VF IGGG I +AL AP + AIH T +
Sbjct: 145 LVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVR 187
>pdb|3GHV|A Chain A, Human Dihydrofolate Reductase Q35kN64F DOUBLE MUTANT
INHIBITOR Complex
pdb|3S3V|A Chain A, Human Dihydrofolate Reductase Q35kN64F DOUBLE MUTANT
BINARY COMPLEX With Trimethoprim
Length = 186
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++FK +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
+ RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KFRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|1MVS|A Chain A, Analysis Of Two Polymorphic Forms Of A Pyrido[2,3-
D]pyrimidine N9-C10 Reverse-Bridge Antifolate Binary
Complex With Human Dihydrofolate Reductase
pdb|1MVT|A Chain A, Analysis Of Two Polymorphic Forms Of A Pyrido[2,3-
D]pyrimidine N9-C10 Reverse-Bridge Antifolate Binary
Complex With Human Dihydrofolate Reductase
pdb|3FS6|A Chain A, Correlations Of Inhibitor Kinetics For Pneumocystis
Jirovecii And Human Dihydrofolate Reductase With
Structural Data For Human Active Site Mutant Enzyme
Complexes
pdb|3GYF|A Chain A, Human Dhfr With Z-Isomer In Orthorhombic Lattice
pdb|2W3A|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|2W3A|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|2W3B|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And A
Lipophilic Antifolate Selective For Mycobacterium Avium
Dhfr, 6-((2,5-Diethoxyphenyl)aminomethyl)-2,4-Diamino-5-
Methylpyrido(2,3-D)pyrimidine (Sri-8686)
pdb|2W3B|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And A
Lipophilic Antifolate Selective For Mycobacterium Avium
Dhfr, 6-((2,5-Diethoxyphenyl)aminomethyl)-2,4-Diamino-5-
Methylpyrido(2,3-D)pyrimidine (Sri-8686)
pdb|2W3M|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
Folate
pdb|2W3M|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
Folate
Length = 187
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 4 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 63
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 64 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 121
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 122 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 180
Query: 196 STY 198
Y
Sbjct: 181 EVY 183
>pdb|1DHF|A Chain A, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|1DHF|B Chain B, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|2DHF|A Chain A, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|2DHF|B Chain B, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|1KMS|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And 6-
([5-Quinolylamino]methyl)-2,4-Diamino-5-Methylpyrido[2,
3- D]pyrimidine (Sri-9439), A Lipophilic Antifolate
pdb|1KMV|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
(Z)-
6-(2-[2,5-Dimethoxyphenyl]ethen-1-Yl)-2,4-Diamino-5-
Methylpyrido[2,3-D]pyrimidine (Sri-9662), A Lipophilic
Antifolate
pdb|1PD8|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-n-methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1PD9|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-N-Methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1PDB|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-N-Methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1S3U|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1S3V|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1S3W|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifoaltes In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1U72|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-Type And Leu22arg Variant
Mouse And Human Dihydrfolate Reductase Ternary Crystal
Complexes With Methotrexate And Nadph
pdb|1YHO|A Chain A, Solution Structure Of Human Dihydrofolate Reductase
Complexed With Trimethoprim And Nadph, 25 Structures
pdb|2C2S|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
2,4-
Diamino-5-(1-O-Carboranylmethyl)-6-Methylpyrimidine, A
Novel Boron Containing, Nonclassical Antifolate
pdb|2C2S|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
2,4-
Diamino-5-(1-O-Carboranylmethyl)-6-Methylpyrimidine, A
Novel Boron Containing, Nonclassical Antifolate
pdb|2C2T|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
2,4- Diamino-5-((7,8-Dicarbaundecaboran-7-Yl)methyl)-6-
Methylpyrimidine, A Novel Boron Containing, Nonclassical
Antifolate
pdb|2C2T|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
2,4- Diamino-5-((7,8-Dicarbaundecaboran-7-Yl)methyl)-6-
Methylpyrimidine, A Novel Boron Containing, Nonclassical
Antifolate
pdb|1DRF|A Chain A, Crystal Structure Of Human Dihydrofolate Reductase
Complexed With Folate
pdb|1HFR|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
pdb|1OHJ|A Chain A, Human Dihydrofolate Reductase, Monoclinic (P21) Crystal
Form
pdb|1OHK|A Chain A, Human Dihydrofolate Reductase, Orthorhombic (P21 21 21)
Crystal Form
pdb|3GHW|A Chain A, Human Dihydrofolate Reductase Inhibitor Complex
pdb|3NXR|A Chain A, Perferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXT|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-And
Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2m,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXV|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXX|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro-2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXY|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alernate Binding Modes Observed Fro The E- And
Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NZD|A Chain A, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five
5-(Omega-Carboxy(Alkyloxy(Pyrido[2,3- D]pyrimidine
Derivatives
pdb|3NTZ|A Chain A, Design, Synthesis, Biological Evaluation And X-Ray Crystal
Structures Of Novel Classical
6,5,6-Tricyclicbenzo[4,5]thieno[2,3-D]pyrimidines As
Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors
pdb|3NU0|A Chain A, Design, Synthesis, Biological Evaluation And X-ray Crystal
Structure Of Novel Classical
6,5,6-tricyclicbenzo[4,5]thieno[2,3-d]pyrimidines As
Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors
pdb|3S7A|A Chain A, Human Dihydrofolate Reductase Binary Complex With Pt684
pdb|4DDR|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
P218
Length = 186
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|1U70|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-Type And Leu22arg Variant
Mouse And Human Dihydrofolate Reductase
Length = 186
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP 80
R +VA +++MGIGK+G PW L ++ K+F+ +T +S GK+N VIMGRKTW SIP
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDRPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 81 LEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQ 140
++RPL R+N+VL+R + S+ AL L+ ++ V+++GG
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAH--FLAKSLDDALRLIEQPELASKVDMVWIVGGSS 119
Query: 141 ILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYC 194
+ EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 120 VYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYK-LLPEYPGVLSEVQEEKGIKYK 178
Query: 195 LSTY 198
Y
Sbjct: 179 FEVY 182
>pdb|3NXO|A Chain A, Perferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
Length = 186
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
+RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 RNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|3EIG|A Chain A, Crystal Structure Of A Methotrexate-Resistant Mutant Of
Human Dihydrofolate Reductase
Length = 186
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNERRYFERMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|1HFQ|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
Length = 186
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNESRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|3F8Z|A Chain A, Human Dihydrofolate Reductase Structural Data With Active
Site Mutant Enzyme Complexes
Length = 187
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F +T +S GK+N VIMG+KTW SIP
Sbjct: 4 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPE 63
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
+ RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 64 KSRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 121
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 122 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 180
Query: 196 STY 198
Y
Sbjct: 181 EVY 183
>pdb|1DLR|A Chain A, Methotrexate-Resistant Variants Of Human Dihydrofolate
Reductase With Substitution Of Leucine 22: Kinetics,
Crystallography And Potential As Selectable Markers
Length = 186
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G PW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDFPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|3F91|A Chain A, Structural Data For Human Active Site Mutant Enzyme
Complexes
Length = 187
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F +T +S GK+N VIMG+KTW SIP
Sbjct: 4 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPE 63
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
+ RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 64 KFRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 121
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 122 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 180
Query: 196 STY 198
Y
Sbjct: 181 EVY 183
>pdb|1BOZ|A Chain A, Structure-Based Design And Synthesis Of Lipophilic 2,4-
Diamino-6-Substituted Quinazolines And Their Evaluation
As Inhibitors Of Dihydrofolate Reductase And Potential
Antitumor Agents
pdb|1HFP|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
Length = 186
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEGRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|3GHC|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of
Classical And Nonclassical
2-Amino-4-Oxo-5-Substituted-6-Thieno[2,3- D]pyrimidines
As Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors And As Potential Antitumor Agenst
Length = 186
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
+ RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KSRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|3OAF|A Chain A, Structural And Kinetic Data For Antifolate Interactions
Against Pneumocystis Jirovecii, Pneumocystis Carinii And
Human Dihydrofolate Reductase And Thier Active Site
Mutants
pdb|3N0H|A Chain A, Hdhfr Double Mutant Q35sN64F TRIMETHOPRIM BINARY COMPLEX
Length = 186
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G LPW L ++ ++F +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
+ RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KFRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|1DLS|A Chain A, Methotrexate-Resistant Variants Of Human Dihydrofolate
Reductase With Substitution Of Leucine 22: Kinetics,
Crystallography And Potential As Selectable Markers
Length = 186
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G PW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDYPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|1U71|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-type And Leu22arg Variant
Mouse And Human Dihydrofolate Reductase Ternary Crystal
Complexes With Methotrexate And Nadph
Length = 186
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL 81
S +VA +++MGIGK+G PW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 3 SLNCIVAVSQNMGIGKNGDRPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE 62
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG +
Sbjct: 63 KNRPLKGRINLVLSRELKEPPQGAH--FLSRSLDDALKLTEQPELANKVDMVWIVGGSSV 120
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV------ENNIRYCL 195
EA+N P + +T I E DTF P ID ++ +P V E I+Y
Sbjct: 121 YKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK-LLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STY 198
Y
Sbjct: 180 EVY 182
>pdb|3JW3|A Chain A, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW3|B Chain B, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
Length = 168
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 21/149 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPL 61
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+IGG QI L
Sbjct: 62 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIIGGAQIYD--L 110
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSS 175
P D ++IT+I E DTF P +D +
Sbjct: 111 FLPYVDKLYITKIHHAFEGDTFFPEMDMT 139
>pdb|3JW5|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW5|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JWC|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWC|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWF|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWF|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWK|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWK|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 21/149 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPL 61
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+ GG QI L
Sbjct: 62 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIFD--L 110
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSS 175
P D ++IT+I E DTF P +D +
Sbjct: 111 FLPYVDKLYITKIHHAFEGDTFFPEMDMT 139
>pdb|3FL8|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL9|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|4ELB|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
Length = 166
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 21/149 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+ GG QI L
Sbjct: 56 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIYD--L 104
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSS 175
P D ++IT+I E DTF P +D +
Sbjct: 105 FLPYVDKLYITKIHHAFEGDTFFPEMDMT 133
>pdb|3E0B|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3E0B|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 166
Score = 91.7 bits (226), Expect = 9e-19, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 10 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAI---GRPL 59
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+ GG QI L
Sbjct: 60 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIYD--L 108
Query: 147 NAPECDAIHITEIETRIECDTFIPSID 173
P D ++IT+I E DTF P +D
Sbjct: 109 FLPYVDKLYITKIHHAFEGDTFFPEMD 135
>pdb|3S9U|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3S9U|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3SA1|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA1|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA2|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SA2|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SAI|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
pdb|3SAI|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
Length = 165
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 9 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAI---GRPL 58
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+ GG QI L
Sbjct: 59 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIYD--L 107
Query: 147 NAPECDAIHITEIETRIECDTFIPSID 173
P D ++IT+I E DTF P +D
Sbjct: 108 FLPYVDKLYITKIHHAFEGDTFFPEMD 134
>pdb|2KGK|A Chain A, Solution Structure Of Bacillus Anthracis Dihydrofolate
Reductase
Length = 172
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAI---GRPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+ GG QI L
Sbjct: 56 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIYD--L 104
Query: 147 NAPECDAIHITEIETRIECDTFIPSID 173
P D ++IT+I E DTF P +D
Sbjct: 105 FLPYVDKLYITKIHHAFEGDTFFPEMD 131
>pdb|3JVX|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JVX|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JWM|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWM|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAI---GRPL 61
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+ GG QI L
Sbjct: 62 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIYD--L 110
Query: 147 NAPECDAIHITEIETRIECDTFIPSID 173
P D ++IT+I E DTF P +D
Sbjct: 111 FLPYVDKLYITKIHHAFEGDTFFPEMD 137
>pdb|2QK8|A Chain A, Crystal Structure Of The Anthrax Drug Target, Bacillus
Anthracis Dihydrofolate Reductase
pdb|3DAT|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Bacillus Anthracis Dihydrofolate Reductase
Length = 162
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD LPW+LPS+L++ K+ T + +IMGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAI---GRPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR N+++TR+ + VE + S+ EL C + E++F+ GG QI L
Sbjct: 56 PGRRNIIVTRNEGYH---VEGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIYD--L 104
Query: 147 NAPECDAIHITEIETRIECDTFIPSID 173
P D ++IT+I E DTF P +D
Sbjct: 105 FLPYVDKLYITKIHHAFEGDTFFPEMD 131
>pdb|1DF7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Methotrexate
pdb|1DG5|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Trimethoprim
pdb|1DG7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And 4-Bromo Wr99210
pdb|1DG8|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph
Length = 159
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 26/168 (15%)
Query: 36 IGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLT 95
IG+ G +PW+LP D F+EIT + ++MGR+TW+S+P + RPLPGR NVVL+
Sbjct: 14 IGRGGDIPWRLPEDQAHFREITM-------GHTIVMGRRTWDSLPAKVRPLPGRRNVVLS 66
Query: 96 RSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIH 155
R F + E + GS+ AL SP + +VIGGGQ+ + AL P
Sbjct: 67 RQADFMASGAE---VVGSLEEAL----TSP------ETWVIGGGQVYALAL--PYATRCE 111
Query: 156 ITEIET---RIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVR 200
+TE++ R D P +D + ++ + + +RY L +Y R
Sbjct: 112 VTEVDIGLPREAGDALAPVLDET-WRGETGEWRFSRSGLRYRLYSYHR 158
>pdb|2W3V|A Chain A, Mycobacterium Avium Dihydrofolate Reductase Complexed With
Nadph And Trimethoprim
pdb|2W3W|A Chain A, Mycobacterium Avium Dihydrofolate Reductase Complexed With
Nadph And A Lipophilic Antifolate Selective For M. Avium
Dhfr, 6-((2,5-diethoxyphenyl)aminomethyl)-2,4-diamino-5-
Methylpyrido(2,3-d)pyrimidine (sri-8686)
Length = 167
Score = 89.0 bits (219), Expect = 6e-18, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 36 IGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLT 95
IG+ G +PW +P DL FKE+T + VIMGR+TWES+P + RPLPGR NVV++
Sbjct: 18 IGRGGDIPWSVPEDLTRFKEVTM-------GHTVIMGRRTWESLPAKVRPLPGRRNVVVS 70
Query: 96 RSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIH 155
R F E + GS+ +AL + P +VIGG QI AL P
Sbjct: 71 RRPDF---VAEGARVAGSLEAALAYAGSDP------APWVIGGAQIYLLAL--PHATRCE 119
Query: 156 ITEIE 160
+TEIE
Sbjct: 120 VTEIE 124
>pdb|1J3J|A Chain A, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|B Chain B, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
Length = 280
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 40/176 (22%)
Query: 35 GIGKDGKLPWKLPS-DLKFFKEITQITSDAG------KR--------------------- 66
G+G G LPWK S D+K+F+ +T +++ KR
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 67 -NAVIMGRKTWESIPLEHRPLPGRLNVVLTRS---GSFDIATVENVVICGSIGSALELLA 122
N V+MGR WESIP + +PL R+NV+L+R+ FD E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
L+ K F+IGG + E L I+ T I + ECD F P I+ + +Q
Sbjct: 155 K----LNYYKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQ 206
>pdb|2CIG|A Chain A, Dihydrofolate Reductase From Mycobacterium Tuberculosis
Inhibited By The Acyclic 4r Isomer Of Inh-Nadp A
Derivative Of The Prodrug Isoniazid
Length = 159
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 26/168 (15%)
Query: 36 IGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLT 95
IG+ G +PW+LP D F+EIT + ++MGR+ W+S+P + RPLPGR NVVL+
Sbjct: 14 IGRGGDIPWRLPEDQAHFREITM-------GHTIVMGRRVWDSLPAKVRPLPGRRNVVLS 66
Query: 96 RSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIH 155
R F + E + GS+ AL SP + +VIGGGQ+ + AL P
Sbjct: 67 RQADFMASGAE---VVGSLEEAL----TSP------ETWVIGGGQVYALAL--PYATRCE 111
Query: 156 ITEIET---RIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVR 200
+TE++ R D P +D + ++ + + +RY L +Y R
Sbjct: 112 VTEVDIGLPREAGDALAPVLDET-WRGETGEWRFSRSGLRYRLYSYHR 158
>pdb|1J3K|A Chain A, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|B Chain B, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
Length = 280
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 40/176 (22%)
Query: 35 GIGKDGKLPWKLPS-DLKFFKEITQITSDAG------KR--------------------- 66
G+G G LPWK S D+K+F+ +T +++ KR
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 67 -NAVIMGRKTWESIPLEHRPLPGRLNVVLTRS---GSFDIATVENVVICGSIGSALELLA 122
N V+MGR WESIP + +PL R+NV+L+R+ FD E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
L+ K F++GG + E L I+ T I + ECD F P I+ + +Q
Sbjct: 155 K----LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQ 206
>pdb|1J3I|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|3DGA|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 280
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 40/176 (22%)
Query: 35 GIGKDGKLPWKLPS-DLKFFKEITQITSDAG------KR--------------------- 66
G+G G LPWK S D+K+F +T +++ KR
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 67 -NAVIMGRKTWESIPLEHRPLPGRLNVVLTRS---GSFDIATVENVVICGSIGSALELLA 122
N V+MGR +WESIP + +PL R+NV+L+R+ FD E+V I + + LL
Sbjct: 99 QNVVVMGRTSWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
L+ K F+IGG + E L I+ T I + ECD F P I+ + +Q
Sbjct: 155 K----LNYYKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQ 206
>pdb|1ZDR|A Chain A, Dhfr From Bacillus Stearothermophilus
pdb|1ZDR|B Chain B, Dhfr From Bacillus Stearothermophilus
Length = 164
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 20/146 (13%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+VA + IGKD +LPW LP+DL +FK +T +A++MGRKT+E+I RPL
Sbjct: 5 IVAMDENRVIGKDNRLPWHLPADLAYFKRVTM-------GHAIVMGRKTFEAI---GRPL 54
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR NVV+T + SF E ++ S+ + +A+ ++VF+IGG ++ +
Sbjct: 55 PGRDNVVVTGNRSF---RPEGCLVLHSLEEVKQWIAS-----RADEVFIIGGAELFRATM 106
Query: 147 NAPECDAIHITEIETRIECDTFIPSI 172
P D +++T+I DTF P I
Sbjct: 107 --PIVDRLYVTKIFASFPGDTFYPPI 130
>pdb|1DDS|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDS|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDR|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|1DDR|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|3DAU|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Escherichia Coli Dihydrofolate Reductase
pdb|3K74|A Chain A, Disruption Of Protein Dynamics By An Allosteric Effector
Antibody
Length = 159
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+DL +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVTW--------VKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>pdb|2INQ|B Chain B, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
Length = 159
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+DL +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVT--------WVKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>pdb|4DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|4DFR|B Chain B, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|1TDR|A Chain A, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
pdb|1TDR|B Chain B, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
Length = 159
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+DL +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVT--------WVKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFKILER 158
>pdb|3DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|3DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|1DYH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYH|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1RB2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB2|B Chain B, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RB3|B Chain B, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RD7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RD7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1JOL|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1JOL|B Chain B, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|2ANO|A Chain A, Crystal Structure Of E.Coli Dihydrofolate Reductase In
Complex With Nadph And The Inhibitor Ms-Sh08-17
pdb|2ANQ|A Chain A, Crystal Structure Of E.Coli Dhfr In Complex With Nadph And
The Inhibitor Compound 10a.
pdb|2INQ|A Chain A, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
pdb|1DRE|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1DRH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1JOM|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1RA1|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Reduced Form)
pdb|1RA2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RA3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RA8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2-
Monophosphoadenosine 5'-diphosphoribose
pdb|1RA9|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Oxidized Form)
pdb|1RC4|A Chain A, Dihydrofolate Reductase Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Oxidized Form)
pdb|1RF7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Dihydrofolate
pdb|1RG7|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate
pdb|1RH3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Reduced
Form)
pdb|1RX1|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (reduced
Form)
pdb|1RX2|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With With
Folate And Nicotinamide Adenine Dinucleotide Phosphate
(Oxidized Form)
pdb|1RX3|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Methotrexate And Nicotinamide Adenine Dinucleotide
Phosphate (Reduced Form)
pdb|1RX4|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And 2'-monophosphoadenosine 5'-
Diphosphoribose
pdb|1RX5|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate
pdb|1RX6|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Reduced Form)
pdb|1RX7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With Folate
pdb|1RX8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2'-
Monophosphoadenosine 5'-Diphosphoribose
pdb|1RX9|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|5DFR|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|6DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|7DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|3KFY|A Chain A, Dynamic Switching And Partial Occupancies Of A Small
Molecule Inhibitor Complex Of Dhfr
pdb|3OCH|A Chain A, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3OCH|B Chain B, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3QL3|A Chain A, Re-Refined Coordinates For Pdb Entry 1rx2
pdb|3QYL|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3QYO|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3R33|A Chain A, Evidence For Dynamic Motion In Proteins As A Mechanism For
Ligand Dissociation
Length = 159
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+DL +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVT--------WVKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>pdb|3IA4|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|C Chain C, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|D Chain D, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA5|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr)
pdb|3IA5|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr)
Length = 162
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 33/159 (20%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A + IG D K+PW LP++L+ FK T GK ++MGR T+ESI RP
Sbjct: 5 MIAALANNRVIGLDNKMPWHLPAELQLFKRAT-----LGK--PIVMGRNTFESI---GRP 54
Query: 86 LPGRLNVVLTRSGSFD------IATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGG 139
LPGRLN+VL+R + +AT+E+ V+ +E++ +IGG
Sbjct: 55 LPGRLNIVLSRQTDYQPEGVTVVATLEDAVVAAG---------------DVEELMIIGGA 99
Query: 140 QILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
I ++ L A D +++T IE E DT+ P + +Q
Sbjct: 100 TIYNQCLAA--ADRLYLTHIELTTEGDTWFPDYEQYNWQ 136
>pdb|2ZZA|A Chain A, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
pdb|2ZZA|B Chain B, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
Length = 162
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 33/159 (20%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A + IG D K+PW LP++L+ FK T GK ++MGR T+ESI RP
Sbjct: 5 MIAALANNRVIGLDNKMPWHLPAELQLFKRAT-----LGK--PIVMGRNTFESI---GRP 54
Query: 86 LPGRLNVVLTRSGSFD------IATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGG 139
LPGRLN+VL+R + +AT+E+ V+ +E++ +IGG
Sbjct: 55 LPGRLNIVLSRQTDYQPEGVTVVATLEDAVVAAG---------------DVEELMIIGGA 99
Query: 140 QILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
I ++ L A D +++T IE E DT+ P + +Q
Sbjct: 100 TIYNQCLAA--ADRLYLTHIELTTEGDTWFPDYEQYNWQ 136
>pdb|3Q1H|A Chain A, Crystal Structure Of Dihydrofolate Reductase From Yersinia
Pestis
Length = 163
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+DL +FK T VIMGRKT+ESI RP
Sbjct: 8 LIAALAADRVIGMENAMPWHLPADLAWFKRNTL-------NKPVIMGRKTFESI---GRP 57
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LPGRLN+V++ D E V SI AL + + E+V V+GGG++ +
Sbjct: 58 LPGRLNIVISSQPGTD----ERVTWAASIEEAL------AFAGNAEEVMVMGGGRVYKQF 107
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVE--NNIRYCLSTYVR 200
L+ + +++T I+ + DT P + ++ +S F + N+ YC R
Sbjct: 108 LD--RANRMYLTHIDAEVGGDTHFPDYEPDEWESVFSEFHDADEANSHSYCFEILER 162
>pdb|1DRA|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRA|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP++L +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPAELAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVT--------WVKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>pdb|2D0K|A Chain A, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
pdb|2D0K|B Chain B, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
Length = 159
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + LPW LP+DL +FK T VI GR TWESI RP
Sbjct: 4 LIAALAVDRVIGNENALPWNLPADLAWFKRNTL-------NKPVIYGRHTWESI---GRP 53
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LPGR N++L+ D + V S+ A+ P ++FVIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTD----DRVTWVKSVDEAIAAAGDVP------EIFVIGGGRVYEQF 103
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF 184
L P+ +++T I+ +E DT P + ++ +S F
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEF 140
>pdb|1DHI|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHI|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+ L +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPASLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVTW--------VKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>pdb|2DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|2DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
Length = 159
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +P+ LP+DL +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPFNLPADLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVT--------WVKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>pdb|1DRB|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRB|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+ L +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPACLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVT--------WVKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>pdb|1DHJ|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHJ|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+ L +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPASLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVTW--------VKSVDEAIAA---CGDVPEIMVIGGGRVYEQ 102
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ S F +N+ YC R
Sbjct: 103 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVSSEFHDADAQNSHSYCFEILER 158
>pdb|3LG4|A Chain A, Staphylococcus Aureus V31y, F92i Mutant Dihydrofolate
Reductase Complexed With Nadph And
5-[(3s)-3-(5-Methoxy-2',6'-Dimethylbiphenyl-
3-Yl)but-1-Yn-1-Yl]-6-Methylpyrimidine-2,4-Diamine
pdb|3LG4|B Chain B, Staphylococcus Aureus V31y, F92i Mutant Dihydrofolate
Reductase Complexed With Nadph And
5-[(3s)-3-(5-Methoxy-2',6'-Dimethylbiphenyl-
3-Yl)but-1-Yn-1-Yl]-6-Methylpyrimidine-2,4-Diamine
Length = 168
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK +K+++ + ++MGRKT+ESI
Sbjct: 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHYKKLST-------GHTLVMGRKTFESIG-- 52
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+IGG +
Sbjct: 53 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIIGGQTLF 99
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 100 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 132
>pdb|3QL0|A Chain A, Crystal Structure Of N23ppS148A MUTANT OF E. COLI
DIHYDROFOLATE Reductase
Length = 160
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 26 VVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHR 84
++ A D IG + +PW LP+DL +FK T VIMGR TWESI R
Sbjct: 4 LIAALAVDRVIGMENAMPWPPLPADLAWFKRNTL-------NKPVIMGRHTWESI---GR 53
Query: 85 PLPGRLNVVL-TRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILS 143
PLPGR N++L ++ G+ D T + S E +AA C + ++ VIGGG++
Sbjct: 54 PLPGRKNIILSSQPGTDDRVT--------WVKSVDEAIAA---CGDVPEIMVIGGGRVYE 102
Query: 144 EALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF--PIVENNIRYCLSTYVR 200
+ L P+ +++T I+ +E DT P + ++ +S F +N YC R
Sbjct: 103 QFL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNAHSYCFEILER 159
>pdb|2W9S|A Chain A, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|B Chain B, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|C Chain C, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|D Chain D, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|E Chain E, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|F Chain F, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9T|A Chain A, Staphylococcus Aureus S1:dhfr
pdb|2W9T|B Chain B, Staphylococcus Aureus S1:dhfr
Length = 161
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 27/155 (17%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++VA + IG +LPW LP+DLK K++T N ++M RKT+ESI +P
Sbjct: 5 IIVAHDKQRVIGYQNQLPWHLPNDLKHIKQLT-------TGNTLVMARKTFESIG---KP 54
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LP R NVVLT SF E V + S+ EL VF+ GGQ L EA
Sbjct: 55 LPNRRNVVLTNQASFH---HEGVDVINSLDEIKELSG---------HVFIF-GGQTLYEA 101
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
+ + D ++IT I+ + + DTF P F+ W
Sbjct: 102 M-IDQVDDMYITVIDGKFQGDTFFPPY---TFEDW 132
>pdb|2BLA|A Chain A, Sp21 Double Mutant P. Vivax Dihydrofolate Reductase In
Complex With Pyrimethamine
pdb|2BLC|A Chain A, Sp21 Double Mutant P. Vivax Dihydrofolate Reductase In
Complex With Des-Chloropyrimethamine
Length = 238
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 80/183 (43%), Gaps = 44/183 (24%)
Query: 35 GIGKDGKLPWKLPS-DLKFFKEITQITSDAG------KR--------------------- 66
G+G G LPWK S D+K+F+ +T ++ KR
Sbjct: 38 GLGNKGTLPWKCNSVDMKYFRSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDN 97
Query: 67 -----------NAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIG 115
N V+MGR WESIP +++PLP R+NVVL+++ + + E V I SI
Sbjct: 98 THGGDNADKLQNVVVMGRSNWESIPKQYKPLPNRINVVLSKTLTKEDVK-EKVFIIDSID 156
Query: 116 SALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSS 175
L LL K F+IGG Q+ E L+ I+ T I CD F P D S
Sbjct: 157 DLLLLLKKL----KYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDES 212
Query: 176 VFQ 178
F+
Sbjct: 213 EFR 215
>pdb|3TQ8|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Trimethoprim
pdb|3TQ9|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Methotrexate
pdb|3TQA|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Nadph
pdb|3TQB|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Folate
Length = 178
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 21/146 (14%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A ++ IG++ +LPW LP+DL FK IT GK ++MGR+T++SI +P
Sbjct: 5 LIAAMDKNRLIGRNNELPWHLPADLAHFKSIT-----LGK--PIVMGRRTFDSI---GKP 54
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LP R N+V+T+ + +E I S+ AL L P +V +IGG +I EA
Sbjct: 55 LPHRRNIVITQQKNL---IIEGCDIFYSLDDALSALTKEP------EVIIIGGARIFKEA 105
Query: 146 LNAPECDAIHITEIETRIECDTFIPS 171
L P+ D + +T I E D + P
Sbjct: 106 L--PKADKMILTIINHSFEGDVYFPE 129
>pdb|2BL9|A Chain A, X-Ray Crystal Structure Of Plasmodium Vivax Dihydrofolate
Reductase In Complex With Pyrimethamine And Its
Derivative
pdb|2BLB|A Chain A, X-Ray Crystal Structure Of Plasmodium Vivax Dihydrofolate
Reductase In Complex With Pyrimethamine And Its
Derivative
Length = 238
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 92/217 (42%), Gaps = 53/217 (24%)
Query: 1 MAADSKTSLSNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPS-DLKFFKEITQI 59
+ A K + ++ +P R+++ G+G G LPWK S D+K+F +T
Sbjct: 13 ICACCKVAPTSAGTKNEPFSPRTFR---------GLGNKGTLPWKCNSVDMKYFSSVTTY 63
Query: 60 TSDAG------KR--------------------------------NAVIMGRKTWESIPL 81
++ KR N V+MGR +WESIP
Sbjct: 64 VDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNADKLQNVVVMGRSSWESIPK 123
Query: 82 EHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQI 141
+++PLP R+NVVL+++ + + E V I SI L LL K F+IGG Q+
Sbjct: 124 QYKPLPNRINVVLSKTLTKEDVK-EKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQV 178
Query: 142 LSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
E L+ I+ T I CD F P D S F+
Sbjct: 179 YRECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFR 215
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 21/184 (11%)
Query: 26 VVVAATRDMG-IGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHR 84
V + A + G IGKD +LPW LP++L+ FKE T +A++MGR T++ + R
Sbjct: 26 VAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTL-------NHAILMGRVTFDG--MGRR 76
Query: 85 PLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LP R ++LTR+ ++ V + S L+ +A L +++GG QI
Sbjct: 77 LLPKRETLILTRNPE---EKIDGVATFHDVQSVLDWYSAQEKNL-----YIVGGKQIFQA 128
Query: 145 ALNAPECDAIHITEIETRIECDTFIPS-IDSSVFQPWYSSFPIVENNIRYCLSTYVRVRS 203
P D + +T I R+E DT+ P+ D S+F+ S F + Y + R R
Sbjct: 129 F--EPYLDEVIVTHIHARVEGDTYFPAEFDLSLFETVSSKFYTKDEKNPYDFTIQYRKRK 186
Query: 204 AAVE 207
+E
Sbjct: 187 EVLE 190
>pdb|2W9G|A Chain A, Wild-Type Staphylococcus Aureus Dhfr In Complex With Nadph
And Trimethoprim
pdb|2W9H|A Chain A, Wild-Type Staphylococcus Aureus Dhfr In Complex With
Trimethoprim
Length = 159
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 52
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 53 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 99
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 100 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 132
>pdb|3SQY|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRQ|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRR|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRS|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRU|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRW|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
Length = 167
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 52
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 53 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 99
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 100 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 132
>pdb|3SGY|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-[(3s)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3SGY|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-[(3s)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3SH2|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-(3-(4-Methoxybiphenyl-3-Yl)prop-1-
Ynyl)pyrimidine-2,4- Diamine (Ucp120j)
pdb|3SH2|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-(3-(4-Methoxybiphenyl-3-Yl)prop-1-
Ynyl)pyrimidine-2,4- Diamine (Ucp120j)
Length = 167
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 131
>pdb|3SR5|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
Length = 166
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 131
>pdb|3FYV|X Chain X, Staph. Aureus Dhfr Complexed With Nadph And Ar-102
pdb|3FYW|X Chain X, Staph. Aureus Dhfr Complexed With Nadph And Ar-101
pdb|3FRD|X Chain X, S. Aureus Dhfr Complexed With Nadph And Folate
pdb|3FRE|X Chain X, S. Aureus Dhfr Complexed With Nadph And Tmp
pdb|3FRF|X Chain X, S. Aureus Dhfr Complexed With Nadph And Iclaprim
Length = 158
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFPPY---TFEDW 131
>pdb|3F0B|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-Phenylphenyl)
But-1-Ynyl]-6-Methylpyrimidine
pdb|3FQ0|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-
1-Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3FQC|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3,4,5-Trimethoxyphenyl)
Pent-1-Ynyl]-6-Methylpyrimidine (Ucp115a)
pdb|3FQC|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3,4,5-Trimethoxyphenyl)
Pent-1-Ynyl]-6-Methylpyrimidine (Ucp115a)
pdb|3FQZ|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-4-Phenylphenyl)
But-1-Ynyl]-6-Methylpyrimidine
pdb|3F0Q|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(2,
6-Dimethylphenyl)phenyl)but-1-Ynyl]- 6-Methylpyrimidine
pdb|3F0S|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-5-(3,5-
Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
Length = 157
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 131
>pdb|4FGG|A Chain A, S. Aureus Dihydrofolate Reductase Co-crystallized With
Propyl-dap Isobutenyl-dihydrophthalazine Inhibitor
pdb|4FGH|A Chain A, S. Aureus Dihydrofolate Reductase Co-crystallized With
Ethyl-dap Isobutenyl-dihydrophthalazine Inhibitor
Length = 163
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 52
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 53 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 99
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 100 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 132
>pdb|3M08|A Chain A, Wild Type Dihydrofolate Reductase From Staphylococcus
Aureus With Inhibitor Rab1
Length = 161
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLF 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFPPY---TFEDW 131
>pdb|3FY8|X Chain X, Crystal Structure Of Staph. Aureus Dhfr Complexed With
Nadph And Ar-101
pdb|3FY9|X Chain X, Staph. Aureus Dhfr F98y Complexed With Ar-102
pdb|3FRA|X Chain X, Staphylococcus Aureus F98y Dhfr Complexed With Iclaprim
pdb|3FRB|X Chain X, S. Aureus F98y Dhfr Complexed With Tmp
Length = 158
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLY 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFPPY---TFEDW 131
>pdb|3F0U|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-5-
Phenylphenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3FQF|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3,4,5-
Trimethoxyphenyl)pent-1-Ynyl]-6-Methylpyrimidine
(Ucp115a)
pdb|3FQO|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(2,5-
Dimethoxyphenyl)prop-1-Ynyl]-6-Ethylpyrimidine (Ucp120b)
pdb|3FQV|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-4-
Phenylphenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3F0V|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(2,
6-Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3F0X|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(3,
5-Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
Length = 157
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLY 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFP---PYTFEDW 131
>pdb|3M09|A Chain A, F98y Tmp-Resistant Dihydrofolate Reductase From
Staphylococcus Aureus With Inhibitor Rab1
Length = 161
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLY 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFPPY---TFEDW 131
>pdb|3I8A|X Chain X, Staphylococcus Aureus H30n, F98y Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-(3-(2,5-
Dimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 157
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE 82
+ ++VA IG + +LPW LP+DLK K+++ + ++MGRKT+ESI
Sbjct: 1 TLSILVAHDLQRVIGFENQLPWHLPNDLKNVKKLST-------GHTLVMGRKTFESIG-- 51
Query: 83 HRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142
+PLP R NVVLT SF+ VE V + SI +L VF+ GG +
Sbjct: 52 -KPLPNRRNVVLTSDTSFN---VEGVDVIHSIEDIYQLPG---------HVFIFGGQTLY 98
Query: 143 SEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180
E ++ + D ++IT IE + DTF P F+ W
Sbjct: 99 EEMID--KVDDMYITVIEGKFRGDTFFPPY---TFEDW 131
>pdb|1LUD|A Chain A, Solution Structure Of Dihydrofolate Reductase Complexed
With Trimethoprim And Nadph, 24 Structures
pdb|2HM9|A Chain A, Solution Structure Of Dihydrofolate Reductase Complexed
With Trimethoprim, 33 Structures
pdb|2HQP|A Chain A, Solution Structure Of L.Casei Dihydrofolate Reductase
Complexed With Nadph, 32 Structures
pdb|1AO8|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate, Nmr,
21 Structures
pdb|1BZF|A Chain A, Nmr Solution Structure And Dynamics Of The Complex Of
Lactobacillus Casei Dihydrofolate Reductase With The New
Lipophilic Antifolate Drug Trimetrexate, 22 Structures
pdb|1DIS|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complex With
Brodimoprim-4,6-Dicarboxylate
pdb|1DIU|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complex With
Brodimoprim-4,6-Dicarboxylate
pdb|2L28|A Chain A, Solution Structure Of Lactobacillus Casei Dihydrofolate
Reductase Apo- Form, 25 Conformers
pdb|2LF1|A Chain A, Solution Structure Of L. Casei Dihydrofolate Reductase
Complexed With Nadph, 30 Structures
Length = 162
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 29 AATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPG 88
A RD IGKDG LPW LP DL +F+ T GK +++GR+T+ES P RPLP
Sbjct: 6 AQDRDGLIGKDGHLPWHLPDDLHYFRAQT-----VGK--IMVVGRRTYESFP--KRPLPE 56
Query: 89 RLNVVLTRSGSF 100
R NVVLT +
Sbjct: 57 RTNVVLTHQEDY 68
>pdb|1VDR|A Chain A, Dihydrofolate Reductase
pdb|1VDR|B Chain B, Dihydrofolate Reductase
Length = 162
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 21/154 (13%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V A + IG+DG+LPW +P+D K ++ ++I D V++GR T+ES+
Sbjct: 6 VAALAENRVIGRDGELPWPSIPADKKQYR--SRIADD-----PVVLGRTTFESM---RDD 55
Query: 86 LPGRLNVVLTRSG-SFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPG +V++RS SF + T S+ A+++ A+ L E +VIGG I
Sbjct: 56 LPGSAQIVMSRSERSFSVDTAHRA---ASVEEAVDIAAS----LDAETAYVIGGAAIY-- 106
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
AL P D + ++ + E DT+ P D++ ++
Sbjct: 107 ALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWE 140
>pdb|2JYB|A Chain A, Binary Hvdhfr1:folate Complex
pdb|2ITH|A Chain A, Nmr Structure Of Haloferax Volcanii Dhfr
Length = 162
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 21/154 (13%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V A + IG+DG+LPW +P+D K ++ +++ D V++GR T+ES+
Sbjct: 6 VAALAENRVIGRDGELPWPSIPADKKQYR--SRVADD-----PVVLGRTTFESM---RDD 55
Query: 86 LPGRLNVVLTRSG-SFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSE 144
LPG +V++RS SF + T S+ A+++ A+ L E +VIGG I
Sbjct: 56 LPGSAQIVMSRSERSFSVDTAHRA---ASVEEAVDIAAS----LDAETAYVIGGAAIY-- 106
Query: 145 ALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178
AL P D + ++ + E DT+ P D++ ++
Sbjct: 107 ALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWE 140
>pdb|3DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
Length = 162
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 29 AATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPG 88
A R+ IGKDG LPW LP DL +F+ T GK +++GR+T+ES P RPLP
Sbjct: 6 AQNRNGLIGKDGHLPWHLPDDLHYFRAQT-----VGK--IMVVGRRTYESFP--KRPLPE 56
Query: 89 RLNVVLTRSGSF 100
R NVVLT +
Sbjct: 57 RTNVVLTHQEDY 68
>pdb|1CZ3|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
Length = 168
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 44 WKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103
W D K F+ +IT++ G V+MGR T+E I RPLP RLNVVLTR
Sbjct: 22 WSSFEDRKNFR---KITTEIGN---VVMGRITFEEI---GRPLPERLNVVLTRRPK---- 68
Query: 104 TVEN---VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHIT 157
T N V GS ++ L Y E+V VIGG + +E L D + +T
Sbjct: 69 TSNNPSLVFFNGSPADVVKFLEGKGY----ERVAVIGGKTVFTEFLREKLVDELFVT 121
>pdb|1JUV|A Chain A, Crystal Structure Analysis Of Dihydrofolate Reductase From
Bacteriophage T4
Length = 193
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 32/160 (20%)
Query: 33 DMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLN 91
++ G LPW ++ DL+ FK T+ T +IMG KT++S+P LPGR +
Sbjct: 19 ELAFGLGDGLPWGRVKKDLQNFKARTEGT-------IMIMGAKTFQSLP---TLLPGRSH 68
Query: 92 VV---------LTRSGSFDIA----TVENVVICGSIGSALELLAASPYCLSIE---KVFV 135
+V +T+ G D+A T E + S G +P+ ++ KV V
Sbjct: 69 IVVCDLARDYPVTKDG--DLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSV 126
Query: 136 IGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSS 175
IGG +L AL P D + ++ I R ++ + +D+S
Sbjct: 127 IGGPALLYAAL--PYADEVVVSRIVKRHRVNSTV-QLDAS 163
>pdb|3CAW|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From
Bdellovibrio Bacteriovorus Liganded With Mg
pdb|3CAW|B Chain B, Crystal Structure Of O-Succinylbenzoate Synthase From
Bdellovibrio Bacteriovorus Liganded With Mg
Length = 330
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 450 MIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP------KPFPILKINPEKKDID 503
+I +V D P DF H G+A L+ Q K+P PF ++ I P K D+D
Sbjct: 179 LIEYVEDPFPFDF-HAWGEARKLAKIA--LDNQYDKVPWGKIASAPFDVIVIKPAKTDVD 235
Query: 504 SFVAEDFKLIGYDPHQKIEMKMAV 527
VA+ QK +K+AV
Sbjct: 236 KAVAQ---------CQKWNLKLAV 250
>pdb|1BIK|A Chain A, X-Ray Structure Of Bikunin From The Human
Inter-Alpha-Inhibitor Complex
Length = 147
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 408 PCHMFAQFYMANG-ELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDL 457
PC Y NG ++C+ +Q MG G F L TC C+L
Sbjct: 34 PCMGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTCRTVAACNL 84
>pdb|1EKR|A Chain A, Moac Protein From E. Coli
Length = 161
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 72 GRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVV-ICGSIGSALELLAASP----- 125
++TW+ IPL H + ++ V L + +E + + G G +E L A+
Sbjct: 66 AKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALT 125
Query: 126 ---YCLSIEKVFVIGGGQILSEA 145
C +++K VIG ++L+++
Sbjct: 126 IYDMCKAVQKDMVIGPVRLLAKS 148
>pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From E. Coli
Length = 161
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 72 GRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVV-ICGSIGSALELLAAS------ 124
++TW+ IPL H + ++ V L + +E + + G G +E L A+
Sbjct: 66 AKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALT 125
Query: 125 --PYCLSIEKVFVIGGGQILSEA 145
C +++K VIG ++L+++
Sbjct: 126 IYAMCKAVQKDMVIGPVRLLAKS 148
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 229 KQFSFLPKMVFEKHEEYLYLRLVQDIISD 257
K F P +VF H +L+L + DI++D
Sbjct: 442 KSIRFRPTLVFRDHHAHLFLNIFSDILAD 470
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,045,269
Number of Sequences: 62578
Number of extensions: 698651
Number of successful extensions: 2004
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 229
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)