Query 009747
Match_columns 527
No_of_seqs 309 out of 2513
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrr_A Dihydrofolate reductase 100.0 6E-147 2E-151 1183.4 46.4 502 16-527 7-515 (515)
2 3hj3_A Chain A, crystal struct 100.0 1E-145 5E-150 1174.0 43.3 501 20-527 3-521 (521)
3 3irm_A Bifunctional dihydrofol 100.0 1E-143 5E-148 1158.6 43.3 472 17-527 16-521 (521)
4 3qg2_A Bifunctional dihydrofol 100.0 4E-144 1E-148 1170.5 39.1 502 21-527 25-608 (608)
5 3ed7_A Tsase, TS, thymidylate 100.0 3E-107 9E-112 815.4 23.8 288 240-527 8-295 (295)
6 1j3k_C Bifunctional dihydrofol 100.0 1E-105 4E-110 813.6 27.6 307 221-527 22-328 (328)
7 3kgb_A Thymidylate synthase 1/ 100.0 3E-105 1E-109 801.1 21.8 286 241-527 6-294 (294)
8 1f28_A Thymidylate synthase; b 100.0 1E-103 5E-108 793.2 24.8 288 240-527 2-297 (297)
9 2aaz_A TS, tsase, thymidylate 100.0 8E-103 3E-107 792.2 26.3 287 241-527 17-317 (317)
10 1hw4_A TS, thymidylate synthas 100.0 7E-103 2E-107 797.5 25.7 288 240-527 68-355 (355)
11 4dq1_A TS, tsase, thymidylate 100.0 2E-102 6E-107 786.6 22.7 278 241-527 6-321 (321)
12 3v8h_A TS, tsase, thymidylate 100.0 6E-101 2E-105 779.3 19.0 284 241-527 2-327 (327)
13 3uwl_A TS, tsase, thymidylate 100.0 5E-100 2E-104 775.7 24.2 276 244-527 2-315 (315)
14 3qj7_A TS, tsase, thymidylate 100.0 1.3E-99 4E-104 751.3 22.7 264 243-527 1-264 (264)
15 2g8o_A TS, tsase, thymidylate 100.0 1.6E-96 5E-101 733.2 23.9 264 244-527 1-264 (264)
16 1tis_A Thymidylate synthase; t 100.0 5.7E-97 2E-101 740.7 16.2 267 244-527 1-286 (286)
17 3ix6_A TS, tsase, thymidylate 100.0 6.9E-96 2E-100 754.4 21.0 267 241-527 94-360 (360)
18 1bkp_A Thymidylate synthase A; 100.0 6E-95 2E-99 725.2 24.6 266 242-527 2-278 (278)
19 1b5e_A Protein (deoxycytidylat 100.0 1.1E-70 3.6E-75 544.3 16.5 220 241-491 6-237 (246)
20 3rg9_A Bifunctional dihydrofol 100.0 3.8E-43 1.3E-47 346.8 15.0 184 18-201 23-239 (240)
21 3nzb_X Dihydrofolate reductase 100.0 3.6E-42 1.2E-46 333.5 15.1 181 19-201 2-205 (206)
22 3s9u_A Dihydrofolate reductase 100.0 3.7E-41 1.3E-45 315.7 19.4 158 23-201 5-164 (165)
23 3tq8_A Dihydrofolate reductase 100.0 6.1E-41 2.1E-45 317.4 20.0 160 23-203 2-163 (178)
24 3ia4_A Dihydrofolate reductase 100.0 3.6E-41 1.2E-45 314.8 17.6 158 23-201 2-161 (162)
25 3dau_A Dihydrofolate reductase 100.0 8.1E-41 2.8E-45 311.4 16.1 156 24-201 2-159 (159)
26 3ix9_A Dihydrofolate reductase 100.0 6.8E-40 2.3E-44 313.4 20.0 162 21-201 22-186 (190)
27 1kmv_A DHFR, dihydrofolate red 100.0 4.9E-40 1.7E-44 313.7 18.9 178 21-201 1-185 (186)
28 3dfr_A Dihydrofolate reductase 100.0 1E-39 3.6E-44 305.1 17.8 159 25-201 2-161 (162)
29 2bl9_A Dihydrofolate reductase 100.0 1.8E-39 6.3E-44 320.0 13.9 174 23-201 26-238 (238)
30 2w3w_A Dihydrofolate reductase 100.0 7.4E-38 2.5E-42 293.9 17.5 160 23-201 5-167 (167)
31 1zdr_A Dihydrofolate reductase 100.0 3E-37 1E-41 288.7 20.8 158 24-201 2-161 (164)
32 1j3k_A Bifunctional dihydrofol 100.0 1.5E-38 5.3E-43 319.6 11.8 179 22-205 26-233 (280)
33 2w9h_A DHFR, dihydrofolate red 100.0 3.8E-37 1.3E-41 286.7 17.3 155 23-201 2-158 (159)
34 1vdr_A DHFR, dihydrofolate red 100.0 8.6E-37 2.9E-41 284.8 18.1 156 23-201 2-158 (162)
35 1df7_A DHFR, dihydrofolate red 100.0 8.1E-37 2.8E-41 284.6 16.6 154 24-201 2-159 (159)
36 3cse_A Dihydrofolate reductase 100.0 1.1E-36 3.9E-41 299.0 12.2 177 22-201 4-217 (227)
37 1aoe_A DHFR, dihydrofolate red 100.0 3.7E-36 1.3E-40 288.3 14.6 172 22-201 4-192 (192)
38 1juv_A DHFR, dihydrofolate red 100.0 2.1E-31 7.1E-36 255.6 8.8 131 24-171 2-162 (193)
39 1cz3_A Dihydrofolate reductase 100.0 1.1E-28 3.7E-33 231.0 18.0 162 22-203 1-166 (168)
40 3jtw_A Dihydrofolate reductase 100.0 1E-28 3.6E-33 233.5 15.6 162 21-200 3-177 (178)
41 3ky8_A Putative riboflavin bio 99.9 4.3E-26 1.5E-30 219.3 16.6 165 20-201 18-195 (197)
42 2xw7_A Dihydrofolate reductase 99.9 4.4E-26 1.5E-30 214.9 10.7 163 20-201 2-174 (178)
43 2gd9_A Hypothetical protein YY 99.9 8.2E-25 2.8E-29 208.0 12.0 166 18-201 5-188 (189)
44 3kgy_A Bifunctional deaminase- 99.9 1.1E-22 3.8E-27 199.7 13.5 170 21-200 20-230 (231)
45 2b3z_A Riboflavin biosynthesis 99.7 2.2E-16 7.4E-21 165.5 14.5 167 20-201 156-371 (373)
46 2azn_A HTP reductase, putative 99.6 7E-15 2.4E-19 142.7 19.0 166 20-201 2-218 (219)
47 2g6v_A Riboflavin biosynthesis 99.5 1.3E-12 4.4E-17 138.2 17.8 153 20-183 172-381 (402)
48 2hxv_A Diaminohydroxyphosphori 99.4 4.1E-12 1.4E-16 132.5 20.1 165 20-201 158-357 (360)
49 2p4g_A Hypothetical protein; p 99.4 2.5E-11 8.5E-16 121.7 19.9 169 20-203 32-263 (270)
50 3r68_A Na(+)/H(+) exchange reg 22.1 76 0.0026 24.8 3.7 46 451-496 41-86 (95)
51 1g9o_A NHE-RF; PDZ domain, com 22.0 1.1E+02 0.0038 23.6 4.7 46 452-497 40-85 (91)
No 1
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=5.7e-147 Score=1183.45 Aligned_cols=502 Identities=42% Similarity=0.772 Sum_probs=468.3
Q ss_pred CCCCCCceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhhc------cCCCCCCcEEEEccccccccCCCCCCCCC
Q 009747 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPG 88 (527)
Q Consensus 16 ~~~~~mrki~livAvs~dG~IG~~g~lpW~-~p~D~~~F~~~T~~------~~~p~~~~~vIMGRkTyeslp~~~~pl~~ 88 (527)
...++||+|++|+|+|+||+||.+|+|||+ +|+|++||+++|++ +++|++.++||||||||||+|.+++|||+
T Consensus 7 ~~~~~MrkI~livA~SldG~IG~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~~~rPLp~ 86 (515)
T 3nrr_A 7 NSYEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLKN 86 (515)
T ss_dssp CTTTTCCCEEEEEEECTTSEEEBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGGGCSCTT
T ss_pred CCCCCCceEEEEEEECCCCcCCCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhhccCCCCC
Confidence 345679999999999999999999999999 99999999999986 34677789999999999999865689999
Q ss_pred CcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCcc
Q 009747 89 RLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTF 168 (527)
Q Consensus 89 R~niVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~f 168 (527)
|+||||||+... .+++.+++|+++|++.|+++. ++++||||||++||++||++++||+++||+||..++||+|
T Consensus 87 R~nIVlSrt~~~----~~~v~V~~sl~eal~~Lk~~~---~~~~I~VIGGg~Iy~~~L~~~liDel~LT~I~~~~~GDtf 159 (515)
T 3nrr_A 87 RINVILSRTVKE----VPGCLVYEDLSTAIRDLRANV---PHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDTY 159 (515)
T ss_dssp EEEEEECSSCCC----CTTEEEESSHHHHHHHHHHHS---CCSCEEECCCHHHHHHHHHTTCEEEEEEEEESSCCCCSEE
T ss_pred CeEEEECCCCCC----CCCEEEECCHHHHHHHHhhcc---CCCCEEEECCHHHHHHHhhCCCCCEEEEEEecCccCCCcc
Confidence 999999999742 357899999999999998641 3689999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEeeeecCcccCCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChhHHHHH
Q 009747 169 IPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHEEYLYL 248 (527)
Q Consensus 169 FP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl 248 (527)
||++ ...|++++.+...+++++.|+|++|+|+++.+.+..+.. ......+++++|+...+++||++.+++|.|+||+
T Consensus 160 FP~~-~~~w~~v~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl 236 (515)
T 3nrr_A 160 FPDI-PDTFEITAISPTFSTDFVSYDFVIYERKDCKTVFPDPPF--DQLLMTGTDISVPKPKYVACPGVRIRNHEEFQYL 236 (515)
T ss_dssp CCCC-CTTEEEEEECCCEECSSCEEEEEEEEECC------CCCH--HHHHTTCSCSSCCCCSCCSSTTCCEECSTHHHHH
T ss_pred CCCc-hhhCEEEEEecccccCCCceEEEEEEEcccccccccccc--cccccccccccccccccccccccccCCchHHHHH
Confidence 9999 788999987666678999999999999977764432211 1124568888888889999999999999999999
Q ss_pred HHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccccCccc
Q 009747 249 RLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNAS 328 (527)
Q Consensus 249 ~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd~~~~ 328 (527)
+||++||++|+.+.||||+||+|+||+||||||+++||+|||||++||++++|||||++|+||+++|+++||+|||+|++
T Consensus 237 ~l~~~il~~G~~~~dRtg~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~g~~iWd~n~~ 316 (515)
T 3nrr_A 237 DILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAKNVRIWELNGR 316 (515)
T ss_dssp HHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTHHHHS
T ss_pred HHHHHHHHhCcCCCCCCCCCeEEeccceEEEecccCCcceeecccchhhhHHHHHHHHhCCccHHHHHHcCCeecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccccCCCCC
Q 009747 329 REYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPP 408 (527)
Q Consensus 329 ~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~l~P 408 (527)
++||++.|+.++++||||++||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||.++++|+|||
T Consensus 317 ~~wl~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp~~~~~malpP 396 (515)
T 3nrr_A 317 RDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPP 396 (515)
T ss_dssp HHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCC
T ss_pred hhhhhhcCCccccCCcCcchhhhheeeCCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecChhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCC
Q 009747 409 CHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPK 488 (527)
Q Consensus 409 C~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~ 488 (527)
||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+
T Consensus 397 Ch~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql~R~p~ 476 (515)
T 3nrr_A 397 CHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPH 476 (515)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCC
T ss_pred CceEEEEEEeCCEEEEEEEchhhhHHHhhhccHHHHHHHHHHHHHHhCCeeeEEEEEEEeEEEcHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 489 PFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 489 ~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 477 ~~P~l~i~~~~~~~~~~~~~df~l~~Y~~~p~ik~~~av 515 (515)
T 3nrr_A 477 PFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMSA 515 (515)
T ss_dssp CCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred CCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 999999999999999999999999999999999999998
No 2
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=1.4e-145 Score=1173.98 Aligned_cols=501 Identities=46% Similarity=0.831 Sum_probs=464.3
Q ss_pred CCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 009747 20 PKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~ 99 (527)
.||+|++|+|+|+||+||.+|+|||++|+|++||+++|++.++|++.++|||||||||+++ .||||+|+|||+||+..
T Consensus 3 ~MrkI~lIvA~SldG~IG~dg~LpW~lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsig--~~PLp~R~nIVlSrt~~ 80 (521)
T 3hj3_A 3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRPLKNRIIVVISSSLP 80 (521)
T ss_dssp CCCEEEEEEEETTTCEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGT--TCCCTTSEEEEECSSSC
T ss_pred CCceEEEEEEECCCCcEECCCCCCCCCHHHHHHHHHHHcCCCccccCCEEEEcccHHhhcC--cccCCCCeEEEEcCCCc
Confidence 4899999999999999999999999999999999999997778888999999999999994 58999999999999975
Q ss_pred CCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECc-ccccCccCCCCCCCCce
Q 009747 100 FDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIET-RIECDTFIPSIDSSVFQ 178 (527)
Q Consensus 100 ~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~-~~~gd~fFP~~~~~~f~ 178 (527)
.. ...+++++++|+++|++.+++++ +.++|||+||++||+++|++++||+++||+||+ .++||+|||+++.. |+
T Consensus 81 ~~-~~~~~~~V~~sl~eal~~lk~~~---g~~~I~VIGGa~ly~~~L~~~liDel~LT~Ipv~~~~GDtfFP~~d~~-w~ 155 (521)
T 3hj3_A 81 QD-EADPNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FL 155 (521)
T ss_dssp CC-CSCSSEEEESSTTTTTTSSSSCT---TEEEEEEEECHHHHHHHHHTTCCSEEEEEEECCCSSCCSEECCCCCTT-EE
T ss_pred cc-CCCCCEEEECCHHHHHHHHhhcc---CCCCEEEEeCHHHHHHHhcCCCCCEEEEEEEeccCcCcCccCCCCCCC-cE
Confidence 31 12356899999999999998752 237899999999999999999999999999999 78999999999988 99
Q ss_pred EeeeecCcccCCccEEEEEEEE-cccchhhccccCCcc--------------ccccCCCCCcccccccccCCcccc-cCh
Q 009747 179 PWYSSFPIVENNIRYCLSTYVR-VRSAAVESLSQNNDI--------------VLDSKTNSDKFEVKQFSFLPKMVF-EKH 242 (527)
Q Consensus 179 l~~~~~~~~e~~~~~~f~~Y~r-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (527)
+++.+....++++.|+|++|+| .++.+.+..+..+.. +..+.+++++|+.+.|+++|++++ ++|
T Consensus 156 lv~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (521)
T 3hj3_A 156 PVYMSQTFCTKNISYDFMIFEKQEKKTLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSIRFGREH 235 (521)
T ss_dssp EEEECCCEEETTEEECCEEEEECCC-----------CCHHHHHHHHHHHHHHGGGSHHHHTCCCCGGGSSSTTCSSCBCS
T ss_pred EEEeecccccCCCceEEEEEEecCcccccccccccccccccccccccccccccccccccccccccccccccccccccCCc
Confidence 9987766677999999999999 455554444433222 234456788899999999999998 899
Q ss_pred hHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccc
Q 009747 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (527)
Q Consensus 243 ~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (527)
+|+||++||++||++|+.+.||||+||+|+||+||||||++|||++||||++||++++|||||++|+||+++|+++||+|
T Consensus 236 ~~~~Yl~l~~~Il~~G~~~~dRtg~gt~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~G~tn~~~l~~~gv~i 315 (521)
T 3hj3_A 236 YEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYI 315 (521)
T ss_dssp THHHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSSCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCT
T ss_pred hHHHHHHHHHHHHHcCcCcCCCCCCceEEeccceEEEccccCcceeeeccccHHHHHHHHHHHHhCCccHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccc
Q 009747 323 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK 402 (527)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~ 402 (527)
||+|++++||++.|++++++||||++||+|||+||+.|.+|+++|+|+++|||++||++||+||+|||+|+++|||.+++
T Consensus 316 Wd~n~~~~~l~~~~~~~~~~g~lG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~ivs~wnp~d~~ 395 (521)
T 3hj3_A 316 WSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALS 395 (521)
T ss_dssp TSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCTTTGG
T ss_pred cCccchhhhhhhcccccccCCcccchhhhheeeCCCccccccccccccchhHHHHHHHHHhcCCCcceeEEEecChhHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEEeC-CeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHH
Q 009747 403 LMALPPCHMFAQFYMAN-GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481 (527)
Q Consensus 403 ~~~l~PC~~~~qf~vr~-g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~ 481 (527)
+|+|||||.++||+|++ |+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++++
T Consensus 396 ~malpPCh~~~qf~V~~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ 475 (521)
T 3hj3_A 396 QMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKE 475 (521)
T ss_dssp GSSSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred cCCCCCceEEEEEEECCCCcEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEehhHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 482 ~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 476 ql~R~p~~~P~l~i~~~~~~~~d~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3hj3_A 476 QLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521 (521)
T ss_dssp HTTSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred HhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 9999999999999999999999999999999999999999999998
No 3
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=1.4e-143 Score=1158.57 Aligned_cols=472 Identities=52% Similarity=0.925 Sum_probs=444.2
Q ss_pred CCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhc------cCCCCCCcEEEEccccccccCCCCCCCCCCc
Q 009747 17 QPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGRL 90 (527)
Q Consensus 17 ~~~~mrki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~------~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~ 90 (527)
.++.||+|++|||++.||+||.+|+|||++|+||+||+++|++ +++|++.++||||||||||+|.+++|||+|.
T Consensus 16 ~~~~~~~islIvA~~~ng~IG~~g~LPW~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~k~rPLP~R~ 95 (521)
T 3irm_A 16 TRLALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGRL 95 (521)
T ss_dssp GSCSSCCEEEEEEEETTSEEESSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGGGCSCTTEE
T ss_pred cccCCceEEEEEEECCCCceecCCCcCCCChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCcccccCCCCCCe
Confidence 3677999999999999999999999999999999999999997 5678888999999999999997678999999
Q ss_pred EEEEcCCCCCC-----C--------CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCC---CcCEE
Q 009747 91 NVVLTRSGSFD-----I--------ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDAI 154 (527)
Q Consensus 91 niVlSrt~~~~-----~--------~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~---lvDel 154 (527)
||||||+.... . ...+++.+++|+++|++.+++.++..+.++||||||++||+++|+++ +||++
T Consensus 96 NIVLSR~~~~~~~~~~~p~~~~~~~~~~~~v~V~~SleeAL~~l~~~~~~~~~~~VfVIGGa~IY~~~L~~~~~~l~D~l 175 (521)
T 3irm_A 96 NVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAI 175 (521)
T ss_dssp EEEECSSCCHHHHHHTSSSHHHHHHHGGGEEEESSCHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHTSTTGGGGEEEE
T ss_pred EEEEecccccccccccccccccccccCCCCeEEECCHHHHHHHHhccccccCCCeEEEEcCHHHHHHHHhCCccccCCEE
Confidence 99999987431 0 01356889999999999998753333457899999999999999988 99999
Q ss_pred EEEEEC-cccccCccC--CCCCCCC-----ceEeeeecCc-ccCC--ccEEEEEEEEcccchhhccccCCccccccCCCC
Q 009747 155 HITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFPI-VENN--IRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNS 223 (527)
Q Consensus 155 ~lT~I~-~~~~gd~fF--P~~~~~~-----f~l~~~~~~~-~e~~--~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~ 223 (527)
+||+|+ ..++||+|| |.++.+. |++++.+... +++| +.|+|++|+|+
T Consensus 176 ~lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~F~~y~r~---------------------- 233 (521)
T 3irm_A 176 YRTTIRASESSCSVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYYFEKLIPR---------------------- 233 (521)
T ss_dssp EEEEECCSSCCCSEECCCCCTTSGGGTTCCEEEEEECCCEECSSSSCCEEEEEEEEEC----------------------
T ss_pred EEEEecCCCcccceecCCCCCChhhccccceEEEEeecccccCCCCeeeEEEEEEEEC----------------------
Confidence 999999 889999999 8998776 9998765443 3377 99999999984
Q ss_pred CcccccccccCCcccccChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCC-CCcccccccccccchHhHH
Q 009747 224 DKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEEL 302 (527)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~-~fP~lT~kk~~~k~~~~El 302 (527)
+|.|+||++||++||++|+.+.||||+||+|+||+||||||++ +||+|||||++||++++||
T Consensus 234 -----------------n~~~~~Yl~l~~~il~~G~~~~drtg~~t~s~fg~~~r~dl~~~~fPllTtkk~~~k~~i~El 296 (521)
T 3irm_A 234 -----------------NREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEEL 296 (521)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHH
T ss_pred -----------------ChhHHHHHHHHHHHHHhCcCCCCCCCCceEEecceeEEEeccCCCCcceeecccchhHHHHHH
Confidence 6899999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHhCCCChhHhhhcCcccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHH
Q 009747 303 LWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKI 382 (527)
Q Consensus 303 lW~l~G~~~~~~l~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~L 382 (527)
|||++|+||+++|+++||+|||+|++++||++.|+.++++||||++||+|||+||+.|.+|+++|+|+++|||++||++|
T Consensus 297 lWfl~g~tn~~~l~~~g~~iWd~~~~~~~l~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~l 376 (521)
T 3irm_A 297 LWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVETL 376 (521)
T ss_dssp HHHHTTCCBTHHHHTTTCCTTSTTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHhcCCeecCcccchhhhhhcCCccccCCcchhhhhhhhhcCCccccccccCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcceEEEeeCccccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeE
Q 009747 383 KNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDF 462 (527)
Q Consensus 383 k~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~ 462 (527)
|+||+|||+|+++|||+++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|
T Consensus 377 k~nP~sRR~i~s~wnp~d~~~malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~ 456 (521)
T 3irm_A 377 KTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGEL 456 (521)
T ss_dssp HHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hcCCCCceEEEEecChhHhhcCCCCCCceEEEEEEeCCEEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 463 IHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 463 ~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+|+++|+|||+||+|++++||+|+|+++|+|+||+++++|+||+.|||+|+||+|||+|||+|||
T Consensus 457 ~h~~gdaHIY~nh~~~~~~ql~R~p~~~P~l~i~~~~~~~~~~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3irm_A 457 VHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521 (521)
T ss_dssp EEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEESCCCSBGGGCCGGGEEEESCCCCCCCSCCCC-
T ss_pred EEEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 4
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=100.00 E-value=4e-144 Score=1170.48 Aligned_cols=502 Identities=44% Similarity=0.804 Sum_probs=459.5
Q ss_pred CceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhcc----------------------------CCCCCCcEEEE
Q 009747 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQIT----------------------------SDAGKRNAVIM 71 (527)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW-~~p~D~~~F~~~T~~~----------------------------~~p~~~~~vIM 71 (527)
..++++|+|++.+|+||.+|+||| ++|+||+||+++|+++ .+|+++++|||
T Consensus 25 ~~~i~lIvA~~~n~gIG~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~VIM 104 (608)
T 3qg2_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (608)
T ss_dssp CSCCCCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCEEEEE
T ss_pred CceEEEEEEeCCCCccccCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCccccccccCcCCEEEE
Confidence 567999999999999999999999 8999999999999832 14677899999
Q ss_pred ccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCc
Q 009747 72 GRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPEC 151 (527)
Q Consensus 72 GRkTyeslp~~~~pl~~R~niVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lv 151 (527)
|||||||+|.+++|||+|+||||||+.... ...+++.+++|+++|++.+++. +.++||||||++||+++|++++|
T Consensus 105 GRKTfESIp~~frPLPgR~NIVLSR~~~~~-~~~~gv~V~~sleeal~~lk~~----~~~~IfVIGGa~IY~~~L~~~la 179 (608)
T 3qg2_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLI 179 (608)
T ss_dssp EHHHHHHSCGGGCSCTTEEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCC
T ss_pred chHHHHhhccccCCCCCCeEEEECCCCccc-cCCCCEEEECCHHHHHHHHhcC----CCCeEEEECCHHHHHHHcccCCC
Confidence 999999999656899999999999996421 1235688999999999999875 25789999999999999999999
Q ss_pred CEEEEEEECcccccCccCCCCCCCCceEeeeecCcccCCccEEEEEEEEcccchhhccccCCcccccc------------
Q 009747 152 DAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDS------------ 219 (527)
Q Consensus 152 Del~lT~I~~~~~gd~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~------------ 219 (527)
|+++||+|+..++||+|||+++.+.|++++.+.+..++++.|+|++|+|+++.+.+..+.+++.+.+.
T Consensus 180 DeL~LT~I~~~~eGDtfFP~id~~~w~~~~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (608)
T 3qg2_A 180 KKIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTC 259 (608)
T ss_dssp SEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC----------------------------
T ss_pred CEEEEEEeCCccCCCccCCCCChHHcEEEEEeeeeccCCCceEEEEEEECCCcccccccccccccccccccccccccccc
Confidence 99999999999999999999999899999887777789999999999999887765544332221100
Q ss_pred --------------------------------------CC--C-CCcccccccccCCcccccChhHHHHHHHHHHHHHcC
Q 009747 220 --------------------------------------KT--N-SDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDG 258 (527)
Q Consensus 220 --------------------------------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G 258 (527)
.+ + +.+++...|+++|++++++|+|+|||+||++||++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qYldl~~~Il~~G 339 (608)
T 3qg2_A 260 HMKKLTEFYKNVDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNG 339 (608)
T ss_dssp -----------------------CCHHHHHHHHHTTTCCSSCTTHHHHCGGGGHHHHHCSEECSTHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccCHHHHHHHHHHHHHHcC
Confidence 11 2 345667889999999999999999999999999999
Q ss_pred ccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccccCccchhhhhhcCCC
Q 009747 259 NLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLT 338 (527)
Q Consensus 259 ~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd~~~~~~~~~~~~~~ 338 (527)
+.+.||||+||+|+||+||||||+++||+|||||++||++++||||||+|+||+++|+++||+|||+|++++|+++.|+.
T Consensus 340 ~~~~dRTGtgT~s~fg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~IWd~n~~~~~~~~~~~~ 419 (608)
T 3qg2_A 340 NKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLF 419 (608)
T ss_dssp EEECCSSSCCEEEEEEEEEEEETTTCCCCCCSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTGGGGSHHHHHHTTCT
T ss_pred CccCCCCCCceEEecceeEEEccccCCceeecccccHHHHHHHHHHHHhCCccHHHHHHcCCCccCccchhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccccCCCCCceeEEEEEEe
Q 009747 339 DREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA 418 (527)
Q Consensus 339 ~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf~vr 418 (527)
++++||||++||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||.++++|+|||||.++||+|+
T Consensus 420 ~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~ 499 (608)
T 3qg2_A 420 HREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVF 499 (608)
T ss_dssp TSCTTBCCSCHHHHHHHBTSCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEEE
T ss_pred cccCCCCchhhhHhhhcCCCccccchhcccccchHHHHHHHHHHhhCCCccceEEEecChhHhccCCCCCceEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCC
Q 009747 419 NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPE 498 (527)
Q Consensus 419 ~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~ 498 (527)
+|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+||++
T Consensus 500 ~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~i~~~ 579 (608)
T 3qg2_A 500 DGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPD 579 (608)
T ss_dssp TTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTT
T ss_pred CCeEEEEEEeehhhhhhhhhccHHHHHHHHHHHHHHhCCeeeEEEEEeeeeEEeHhHHHHHHHHhcCCCCCCCEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 499 KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 499 ~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+++|+||++|||+|+||+|||+|||||||
T Consensus 580 ~~~i~df~~~Df~l~~Y~~hp~Ik~~~av 608 (608)
T 3qg2_A 580 IKNIEDFTISDFTIQNYVHHEKISMDMAA 608 (608)
T ss_dssp CCSGGGCCGGGEEEESCCCCCCCCSSCCC
T ss_pred CCChhcCCHhHEEEeCCcCCCccCcCccC
Confidence 99999999999999999999999999998
No 5
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=100.00 E-value=2.8e-107 Score=815.37 Aligned_cols=288 Identities=66% Similarity=1.170 Sum_probs=276.3
Q ss_pred cChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009747 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
.+|.|+||++||++||++|+.+.||||+||+|+||++|||||++|||++||||++||++++|||||++|+||+++|+++|
T Consensus 8 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~g 87 (295)
T 3ed7_A 8 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 87 (295)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC--
T ss_pred CCChHHHHHHHHHHHHHcCcCCCCCCCCceEEEcCceEEEecccCcceeecccccHHHHHHHHHHHHhCCccHHHHHHcC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 009747 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (527)
|+|||+|++++|+++.|+..+++||+|++||+|||+||+.|.+|+++|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 88 v~IWd~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~ 167 (295)
T 3ed7_A 88 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 167 (295)
T ss_dssp ---CCSCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccccchhhhhhhcccCCccCCCcCccchhhhhhccCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCHh
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhH
Q 009747 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~ 479 (527)
++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 168 dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~~ 247 (295)
T 3ed7_A 168 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 247 (295)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhhcCCCCCceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 480 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 480 ~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
++||+|+|+++|+|+||+++++|+||+.|||+|+||+|||+|||||||
T Consensus 248 ~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~aV 295 (295)
T 3ed7_A 248 KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295 (295)
T ss_dssp HHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCC----
T ss_pred HHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCccccC
Confidence 999999999999999999999999999999999999999999999998
No 6
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=100.00 E-value=1.3e-105 Score=813.58 Aligned_cols=307 Identities=54% Similarity=1.030 Sum_probs=300.4
Q ss_pred CCCCcccccccccCCcccccChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHh
Q 009747 221 TNSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300 (527)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~ 300 (527)
+.++.++...++++|+++..+++|+||++||++||++|+.+.||||+||+|+||++|||||++|||++||||++||++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~e~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~gFPllTtKkv~~ks~i~ 101 (328)
T 1j3k_C 22 KNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIE 101 (328)
T ss_dssp TSCSCCCGGGGHHHHHCSEECSTHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHH
T ss_pred hccCcccccceeechhhcccCcHHHHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEccccCCcccccccccchhcHH
Confidence 44445677888999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHhhhcCcccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHH
Q 009747 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVIN 380 (527)
Q Consensus 301 EllW~l~G~~~~~~l~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~ 380 (527)
|||||++|+||+++|+++||+|||+||+++|++++|++++++||||++||+|||+||+.|.+++.+|+|+++|||++||+
T Consensus 102 ELLWfl~G~tni~~L~e~gv~IWd~wa~~~~ld~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~ 181 (328)
T 1j3k_C 102 ELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIIN 181 (328)
T ss_dssp HHHHHHTTCCBHHHHHTTTCCTTSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHcCCcccCccchhhhhhccccccccCCcccccCchHhhcCCcccccccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcceEEEeeCccccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcce
Q 009747 381 KIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPG 460 (527)
Q Consensus 381 ~Lk~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G 460 (527)
+||+||+|||+|+++|||+++++|+|||||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|
T Consensus 182 ~Lk~nP~SRR~IvsaWnp~dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LG~PfNiasyalL~~miAq~~Gle~G 261 (328)
T 1j3k_C 182 LIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPA 261 (328)
T ss_dssp HHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCCCceEEEEccCHHHhcCCCCCCceeEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 461 DFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 461 ~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+|+|+++|+|||+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 262 efih~igdaHIY~nhie~v~~qL~R~P~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~vAV 328 (328)
T 1j3k_C 262 QFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 328 (328)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC
T ss_pred EEEEEEeeeEeeHHHHHHHHHHhcCCCCCCCeeEeCCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=100.00 E-value=3.3e-105 Score=801.05 Aligned_cols=286 Identities=57% Similarity=1.091 Sum_probs=249.5
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCC-CCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009747 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~-~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
+|.|+||++||++||++|+.+.||||+||+|+||++|||||++ +||++||||++||++++|||||++|+||+++|+++|
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~g 85 (294)
T 3kgb_A 6 RHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKG 85 (294)
T ss_dssp -CTHHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHTTT
T ss_pred CchHHHHHHHHHHHHHhCcCcCCCCCCceEEeccceEEEecccCccceeeeccccHHHHHHHHHHHHhCCccHHHHHhcC
Confidence 6899999999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred cccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 009747 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (527)
|+|||+|++++|+++.|+ ++++||+|++||+|||+||++|.+|+++|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 86 v~IWd~~~~~~~~~~~~~-~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~ 164 (294)
T 3kgb_A 86 VRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPT 164 (294)
T ss_dssp CC----------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCCTT
T ss_pred CCccccchhhhhhhcccc-cccCCCCccccchhhhcCCCccccccccccccchhHHHHHHHHHhcCCCccceEEEecChh
Confidence 999999999999999998 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhH
Q 009747 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~ 479 (527)
++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 165 dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e~~ 244 (294)
T 3kgb_A 165 DLGSMALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSL 244 (294)
T ss_dssp CHHHHHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhcCCCCCCCCceEEEEEECCEEEEEEEehhhhhhHHhhccHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCC--CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 480 EEQLQKLPKPFPILKINPE--KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 480 ~~~l~r~p~~~p~l~~~~~--~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+||||||.
T Consensus 245 ~~qL~R~p~~~P~l~i~~~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~a~ 294 (294)
T 3kgb_A 245 RQQIQRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMSA 294 (294)
T ss_dssp HHHTTSCCCCCCEEEECCSSCCCSGGGCCGGGEEEESCCCC---------
T ss_pred HHHhcCCCCCCCEEEECCcCCCCchhcCCHhHEEEeCCcCCCcCCCCCCC
Confidence 9999999999999999999 99999999999999999999999999983
No 8
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=100.00 E-value=1.4e-103 Score=793.16 Aligned_cols=288 Identities=63% Similarity=1.158 Sum_probs=284.2
Q ss_pred cChhHHHHHHHHHHHHHcCccccCCCCceeeeeccc-eeEEeCCCC-CcccccccccccchHhHHHHHHhCCCChhHhhh
Q 009747 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE 317 (527)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~-~~~~dl~~~-fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~ 317 (527)
+++.|+||++||++||++|+.+.||||+||+|+||+ +|||||++| ||++||||++||++++||||||+|+||+++|++
T Consensus 2 ~~~~e~qYldl~~~Il~~G~~~~dRTG~gT~s~fg~pq~rfdl~~g~fPllTtKkv~~ks~i~ELLWfl~G~tn~~~L~~ 81 (297)
T 1f28_A 2 VNAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLRE 81 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHT
T ss_pred CCchHHHHHHHHHHHHHcCCCcCCCCCCceEeeeccceEEEecCCCcccccccCCccccccHHHHHHHHhCCCcHHHHHH
Confidence 468899999999999999999999999999999999 999999999 999999999999999999999999999999999
Q ss_pred cCcccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeC
Q 009747 318 KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWN 397 (527)
Q Consensus 318 ~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~ 397 (527)
+||+|||+|++++|+++.|++++++||+|++||+|||+|++.|.+++.+|+|+++|||++||++||+||+|||+|+++||
T Consensus 82 ~gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wn 161 (297)
T 1f28_A 82 KNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWN 161 (297)
T ss_dssp TTCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCC
T ss_pred cCCCcCCccccHHHHhhcccccccCCcccccchhhhhcCCccccCcccccCCCCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCceeEEEEEEe------CCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccc
Q 009747 398 PSDLKLMALPPCHMFAQFYMA------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHV 471 (527)
Q Consensus 398 p~~~~~~~l~PC~~~~qf~vr------~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HI 471 (527)
|+++++|+|||||.++||+|+ +|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+||
T Consensus 162 p~dl~~malpPCh~~~QF~V~~~~~~~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHI 241 (297)
T 1f28_A 162 PADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHI 241 (297)
T ss_dssp TTTGGGSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEE
T ss_pred hhHhhcCCCCCceeEEEEEEeccCCCCCCcEEEEEEhhhhhHHhhhhhhHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEe
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 472 YRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 472 Y~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
|+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 242 Y~nh~e~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~av 297 (297)
T 1f28_A 242 YKDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297 (297)
T ss_dssp EHHHHHHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred eHhHHHHHHHHHhcCCCCCCEeeeCCCCCchhhCChhHEEEeCCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 9
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=100.00 E-value=7.7e-103 Score=792.16 Aligned_cols=287 Identities=61% Similarity=1.091 Sum_probs=283.7
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccc-eeEEeCCCC-CcccccccccccchHhHHHHHHhCCCChhHhhhc
Q 009747 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEK 318 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~-~~~~dl~~~-fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~ 318 (527)
+++|+||++||++||++|+.+.||||+||+|+||+ +|||||+++ ||++||||++||++++||||||+|+||+++|+++
T Consensus 17 ~~~e~qYldl~~~Il~~G~~~~dRTGtgT~sifg~~q~rfdL~~g~fPllTtKkv~~ks~i~ELLWfl~G~tni~~L~~~ 96 (317)
T 2aaz_A 17 DHEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQ 96 (317)
T ss_dssp TCTHHHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHTT
T ss_pred CcHHHHHHHHHHHHHHcCCCccCCCCCceEeecCceeEEEecCCCcceecccCccchHhhHHHHHHHHhCCCcHHHHHhc
Confidence 57899999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred CcccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCc
Q 009747 319 DIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNP 398 (527)
Q Consensus 319 ~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p 398 (527)
||+|||+|++++|++++|++++++||+|++||+|||+|++.|.+++.+|+|+++|||++||++||+||+|||+|+++|||
T Consensus 97 gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~dy~G~~iDQi~~vI~~Lk~nP~SRR~IvsaWnp 176 (317)
T 2aaz_A 97 GVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNP 176 (317)
T ss_dssp TCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCcccCcchhhhhhhccCcccccCCCcCcccchHhhcCCccccCcccccccccHHHHHHHHHHHhcCCCCceEEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceeEEEEEEe---------CCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcc
Q 009747 399 SDLKLMALPPCHMFAQFYMA---------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDA 469 (527)
Q Consensus 399 ~~~~~~~l~PC~~~~qf~vr---------~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~ 469 (527)
+++++|+|||||.++||+|+ +|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+
T Consensus 177 ~dl~~maLpPCh~~~QF~V~~~~~~~~~~~gkL~~~lyQRS~D~~LGvPfNiasyalL~~miA~~~gl~~G~f~h~~gda 256 (317)
T 2aaz_A 177 KDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDA 256 (317)
T ss_dssp TTGGGSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hHhhcCCCCCcceEEEEEEecccccCCCCCCeEEEEEEeehhhhhhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEeeee
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHhhcCCCCCCeEEeCCC---CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 470 HVYRNHVRPLEEQLQKLPKPFPILKINPE---KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 470 HIY~~h~~~~~~~l~r~p~~~p~l~~~~~---~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
|||+||+|++++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+|||||||
T Consensus 257 HIY~nH~e~v~~qL~R~p~~~P~l~i~~~~~~~~~i~d~~~eDf~l~~Y~~hp~Ik~~vaV 317 (317)
T 2aaz_A 257 HVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMSA 317 (317)
T ss_dssp EEEGGGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGGEEEECCCCCCCCCCCCCC
T ss_pred EeeHhHHHHHHHHHhcCCCCCCeEEECCccCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 99999999999999999999999999999 99999999999999999999999999998
No 10
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=100.00 E-value=6.9e-103 Score=797.53 Aligned_cols=288 Identities=66% Similarity=1.170 Sum_probs=260.2
Q ss_pred cChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009747 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
++++|+||+++|++||++|+.+.||||+||+|+||++|||||+++||++||||++||++++||||||+|+||+++|+++|
T Consensus 68 ~~~~e~qYldll~~IL~~G~~~~dRTGtgT~sifG~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~Gstni~~L~e~g 147 (355)
T 1hw4_A 68 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 147 (355)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCCCCceecccceeEEEeCCcCCcccccccccccccHHHHHHHHhCCCcHHHHHHcC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 009747 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (527)
|+|||+|++++|++++|++++++||+|++||+|||+||+.|.+++.+|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 148 v~IWd~w~~~~~l~~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~VI~~Lk~nP~SRR~IvsaWNp~ 227 (355)
T 1hw4_A 148 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 227 (355)
T ss_dssp C----------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccCCcchHHHhhccCcccccCCcccCccchhhhcCcccccCCccccCCCChHHHHHHHHHHhcCCCCceEEEEccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhH
Q 009747 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~ 479 (527)
++++|+|||||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 228 dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LGvPfNIasyalLt~miAq~~Gle~GefvhtigdaHIY~nHie~v 307 (355)
T 1hw4_A 228 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 307 (355)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred hhhcCCCCCceeEEEEEEeCCEEEEEEEehhhhhhhhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEEEeEeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 480 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 480 ~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 308 keqL~ReP~~~P~L~in~~~~~i~df~~eDf~l~~Y~~hp~Ik~~vAV 355 (355)
T 1hw4_A 308 KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355 (355)
T ss_dssp HHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred HHHHhcCCCCCCeeEeCCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 999999999999999999999999999999999999999999999998
No 11
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-102 Score=786.60 Aligned_cols=278 Identities=49% Similarity=0.853 Sum_probs=268.0
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009747 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
++.|+||++||++||++|+.+.||||+||+|+||+||||||++|||+|||||++||++++|||||++|+||+++|+++||
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTgtgT~s~fg~q~rfdL~~gfPllTTKkv~~k~ii~ELLWfl~G~tNi~~L~~~gv 85 (321)
T 4dq1_A 6 NSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNN 85 (321)
T ss_dssp CHHHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHcCcCCCCCCCCCeEEEeeeeEEecCCCCCceeeeecccHHHHHHHHHHHHhCCCcHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhhhcCCCC--------------------------------------CCCCCCCCccccccccccccccc
Q 009747 321 HIWDGNASREYLDSVGLTD--------------------------------------REEGDLGPVYGFQWRHFGARYTN 362 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~--------------------------------------~~~g~lG~~YG~~wR~~~~~~~~ 362 (527)
+|||+||+++|+++.|+.. +++||||++||+|||+|++
T Consensus 86 ~IWd~wa~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~f~~~il~d~~f~~~~GdLGpvYG~QwR~~~~---- 161 (321)
T 4dq1_A 86 NIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVD---- 161 (321)
T ss_dssp CTTHHHHHHHHTTSTTCCSSCCTTCSHHHHHCTTHHHHHHHHHHHHHHHHHHCHHHHHHHSBCCCCHHHHHHCEEC----
T ss_pred cccCccchhhhhccccccCccccccccccccchhHHHHHHHHHHHhhhhhcccccccccCCcCccchhhHheeCcC----
Confidence 9999999999999988753 5689999999999999985
Q ss_pred ccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHH
Q 009747 363 MHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIA 442 (527)
Q Consensus 363 ~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~ 442 (527)
|+|+++|||++||++||+||+|||+|+++|||+++++|+|||||.++||+|++|+|+|++||||+|+++|+||||+
T Consensus 162 ----~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNia 237 (321)
T 4dq1_A 162 ----KDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIA 237 (321)
T ss_dssp ----TTCCEECHHHHHHHHHHHCTTCSCCEEECCCGGGTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHH
T ss_pred ----CCCCchhHHHHHHHHHhcCCCCceeEEEecChHHhccCCCCCCceEEEEEEECCEEEEEEEchhhhHHHHhhccHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCC
Q 009747 443 SYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIE 522 (527)
Q Consensus 443 ~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~ 522 (527)
+|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+||++ ++|+||++|||+|+||+|||+||
T Consensus 238 syalL~~miAq~~Gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~in~~-~~i~df~~eDf~l~~Y~~hp~Ik 316 (321)
T 4dq1_A 238 SYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD-KSIFDINYEDLEIVDYESHPAIK 316 (321)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCCEEEECCC-SCGGGCCGGGEEEESCCCCCCCC
T ss_pred HHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCCEEEECCC-CCcccCCHhHEEEeCCcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccC
Q 009747 523 MKMAV 527 (527)
Q Consensus 523 ~~~av 527 (527)
+||||
T Consensus 317 ~~vAV 321 (321)
T 4dq1_A 317 APIAV 321 (321)
T ss_dssp C----
T ss_pred ccccC
Confidence 99998
No 12
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=5.8e-101 Score=779.28 Aligned_cols=284 Identities=36% Similarity=0.655 Sum_probs=260.2
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009747 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
++.|+||++||++||++|+.+.||||+||+|+||++|||||++|||++||||++||++++|||||++|+||+++|+++||
T Consensus 2 ~~~m~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~G~tn~~~L~e~gv 81 (327)
T 3v8h_A 2 PGSMKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGC 81 (327)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC--CCCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHTTCCBHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHcCCccCCCCCCceEEecCceEEEecccCCcccccccccHHHHHHHHHHHHhCCccHHHHHHcCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc--chhhhhhcCCCCCCCCCCCCcccccccccccccccccCC-------------------CCCC--------C
Q 009747 321 HIWDGNA--SREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD-------------------YSGQ--------G 371 (527)
Q Consensus 321 ~iWd~~~--~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~-------------------~~~~--------~ 371 (527)
+|||+|| +++||++. . .+++||||++||+|||+|++ |.+|+++ ++|+ +
T Consensus 82 ~IWd~wa~~~~~~ld~~-~-~~e~GdLGpvYG~QWR~~~a-y~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~~~ 158 (327)
T 3v8h_A 82 KVWDANANENAQWLANP-Y-RRGADDLGDVYGVQWRRWPG-YKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKA 158 (327)
T ss_dssp CTTHHHHHTCHHHHTCT-T-CCSTTBCCSCTHHHHHHEEE-EEEEETTCHHHHHHHHHTTCEEEEEEEETTEEEEEEEEE
T ss_pred cccccchhhhhhhhccc-c-cccCCCCCcchhhHhhhccc-cccccccchhhhhhhhcccceeccccCCCcccccccccc
Confidence 9999999 88999872 2 26799999999999999998 6666653 4577 8
Q ss_pred chHHHHHHHHHhcCCCCcceEEEeeCccccccCCCCCceeEEEE--EEeCCeEEEEEEeecccccccccccHHHHHHHHH
Q 009747 372 FDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQF--YMANGELSCQMYQRSADMGLGVPFNIASYALLTC 449 (527)
Q Consensus 372 ~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf--~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~ 449 (527)
+|||++||++||+||+|||+|+++|||+++++|+|||||.++|| +|++|+|+|++||||||+++|+||||++|++|++
T Consensus 159 iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~malpPCh~~~qF~~~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~ 238 (327)
T 3v8h_A 159 IDQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLT 238 (327)
T ss_dssp ECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTTTEEEEEEEEEEEETTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCccceEEEecChhHhccCCCCCCceEEEEeeeecCCeEEEEEEeehhhhHhHhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCc-----------ccCCeEEeCCCCC
Q 009747 450 MIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSF-----------VAEDFKLIGYDPH 518 (527)
Q Consensus 450 ~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~-----------~~~df~l~~Y~~~ 518 (527)
|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+||+++++|+|| ++|||+|+||+||
T Consensus 239 miA~~~gl~~G~~~h~~gdaHIY~nHie~~~eqL~R~p~~~P~l~i~~~~~~i~d~~~y~~~w~~~~~~~Df~l~~Y~~h 318 (327)
T 3v8h_A 239 LVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLERVEPSDFTLVGYRHH 318 (327)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCEEEECTTSCCHHHHCCCCTTHHHHCCGGGEEEESCCCC
T ss_pred HHHHHhCCeeeEEEEEEeeeEeehhHHHHHHHHhCCCCCCCCEEEECCCCCCHHHhhcccccccccCCccceEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred CCCCccccC
Q 009747 519 QKIEMKMAV 527 (527)
Q Consensus 519 ~~i~~~~av 527 (527)
|+|||||||
T Consensus 319 p~Ik~~~AV 327 (327)
T 3v8h_A 319 EPLSAPMAV 327 (327)
T ss_dssp ---------
T ss_pred CcCCCCccC
Confidence 999999998
No 13
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=100.00 E-value=4.5e-100 Score=775.70 Aligned_cols=276 Identities=52% Similarity=0.919 Sum_probs=264.9
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009747 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+|||+||++||++|+.+.||||+||+|+||++|||||++|||+|||||++||++++||||||+|+||++.|+++||+||
T Consensus 2 e~qYldLl~~IL~~G~~k~dRTGtgT~SvFG~q~rfdL~~gFPlLTTKkv~~Ksii~ELLWFl~G~Tn~~~L~e~gv~IW 81 (315)
T 3uwl_A 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELLWFLKGDTNIRYLLERNNHIW 81 (315)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTT
T ss_pred hHHHHHHHHHHHHcCCCcCCCCCCceEEEeeeeEEEeccCCCceeeeccchHHHHHHHHHHHHcCCccHHHHHHcCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhhhcCCCCC--------------------------------------CCCCCCCcccccccccccccccccC
Q 009747 324 DGNASREYLDSVGLTDR--------------------------------------EEGDLGPVYGFQWRHFGARYTNMHA 365 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~--------------------------------------~~g~lG~~YG~~wR~~~~~~~~~~~ 365 (527)
|+||+++|+++.++... +.||+||+||+|||+|++
T Consensus 82 d~wa~~~~l~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~f~~~i~~d~~~~~~~GdlGpvYG~QwR~~~~------- 154 (315)
T 3uwl_A 82 DEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWET------- 154 (315)
T ss_dssp CHHHHHHHHHSSSCCC---------------------CHHHHHHHHHHHCHHHHHHHSBCCSSHHHHHHCEEC-------
T ss_pred cccchhhhhhcccccCcccccccceeeccchhhhhhhhHHHHhhhhhccccccccccCcccccCccccccccC-------
Confidence 99999999988765310 128999999999999975
Q ss_pred CCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHH
Q 009747 366 DYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYA 445 (527)
Q Consensus 366 ~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~ 445 (527)
++++++|||++||++||+||+|||+|+++|||.++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|+
T Consensus 155 -~~g~~iDQi~~vi~~Lk~nP~sRR~i~s~Wnp~~~~~~~lpPCh~~~qf~v~~~~L~~~lyqRS~D~~lG~pfNiasya 233 (315)
T 3uwl_A 155 -KDGSFIDQLANVIEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYA 233 (315)
T ss_dssp -TTSCEECHHHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHH
T ss_pred -CCCCcchHHHHHHHHhccCCCCCeEEEEecCHHHHhcCCccccceEEEEEECCCeEEEEEEeehhhhhhcccHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccc
Q 009747 446 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKM 525 (527)
Q Consensus 446 ~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~ 525 (527)
+|++|||++||++||+|+|+++|+|||+||+|+|++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||
T Consensus 234 lL~~miA~~~gl~~G~~~h~~gd~HIY~nh~e~~~~ql~R~p~~~P~L~in~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~ 313 (315)
T 3uwl_A 234 LLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEGYDPHPTIKAPI 313 (315)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCCGGGCCGGGEEEESCCCCCCCCCCC
T ss_pred HHHHHHHHHhCCccceEEEEeeeeEeeHhHHHHHHHHhCCCCCCCCeEEECCCCCccccCCHHHEEEeCCCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009747 526 AV 527 (527)
Q Consensus 526 av 527 (527)
||
T Consensus 314 AV 315 (315)
T 3uwl_A 314 AV 315 (315)
T ss_dssp --
T ss_pred cC
Confidence 98
No 14
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=100.00 E-value=1.3e-99 Score=751.33 Aligned_cols=264 Identities=49% Similarity=0.883 Sum_probs=256.0
Q ss_pred hHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccc
Q 009747 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (527)
Q Consensus 243 ~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (527)
.|+||+++|++||++|+.++||||+||+|+||++|||||++|||++||||++||++++|||||++|+||+++|+++|++|
T Consensus 1 ~m~~Yl~l~~~Il~~G~~~~dRTg~gT~s~fg~~~rfdL~~~fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~gv~i 80 (264)
T 3qj7_A 1 SMTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTI 80 (264)
T ss_dssp -CCHHHHHHHHHHHHCEEECCTTSCCEEEEESCEEEEEGGGCCCCCTTTTCCHHHHHHHHHHHHHTCCBSHHHHTTTCCT
T ss_pred ChHHHHHHHHHHHHcCcCCCCCCCCceEEEecceEEEecCCCCceeecccccHHHHHHHHHHHHcCCCcHHHHHHhCCCc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccc
Q 009747 323 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK 402 (527)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~ 402 (527)
||+|+ +++||+|++||+|||+|++ |+|+++|||++||++||+||+|||+|+++|||++++
T Consensus 81 Wd~wa------------~e~GdlG~vYG~qwr~~~~--------~~g~~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~ 140 (264)
T 3qj7_A 81 WDEWA------------SDTGELGPIYGVQWRSWPA--------PSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIE 140 (264)
T ss_dssp TGGGC------------CTTSBCCSCHHHHHHHEEC--------TTSCEECHHHHHHHHHHHCTTCSCCEEECCCGGGGG
T ss_pred chhhc------------ccCCCCccccchhheecCC--------CCcccHHHHHHHHHHHhcCCCCceEEEEccChhHhc
Confidence 99997 6789999999999999985 568899999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHH
Q 009747 403 LMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQ 482 (527)
Q Consensus 403 ~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~ 482 (527)
+|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++|
T Consensus 141 ~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~q 220 (264)
T 3qj7_A 141 RMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQ 220 (264)
T ss_dssp GSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred cCCCCCceEEEEEEEeCCEEEEEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 483 LQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 483 l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
|+|+|+++|+|+| +++++|+||+.|||+|+||+|||+|||||||
T Consensus 221 L~R~p~~~P~l~i-~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 264 (264)
T 3qj7_A 221 LSREPRPYPKLLL-ADRDSIFEYTYEDIVVKNYDPHPAIKAPVAV 264 (264)
T ss_dssp HTSCCCCCCEEEE-ECCSSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred hcCCCCCCCEEEe-CCCCChhcCCHhHEEEECCcCCCccCccccC
Confidence 9999999999999 9999999999999999999999999999997
No 15
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=100.00 E-value=1.6e-96 Score=733.16 Aligned_cols=264 Identities=52% Similarity=0.941 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009747 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||+++|++||++|+.++||||+||+|+||++|||||+++||++||||++||++++|||||++|+||+++|+++|++||
T Consensus 1 ~~~Yl~l~~~Il~~G~~~~drtG~~T~s~fg~~~r~dl~~~fPllTtkk~~~ks~i~ELlWfl~G~tn~~~l~~~gv~iW 80 (264)
T 2g8o_A 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW 80 (264)
T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHcCcCccCCCCCeEEEEeeeEEEeecCCCCceeeccccchhhhHHHHHHHHcCCCcHHHHHHcCCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccc
Q 009747 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (527)
|+|+ +++|++|++||+|||+|+.. +|+++|||++||++||+||+|||+|+++|||+++++
T Consensus 81 d~~~------------~~~G~lG~vYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk~nP~sRR~i~s~wnp~dl~~ 140 (264)
T 2g8o_A 81 DEWA------------DENGDLGPVYGKQWRAWPTP--------DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDK 140 (264)
T ss_dssp GGGC------------CTTSBCCSCHHHHHHHEEET--------TTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGG
T ss_pred hhcc------------CCCCCcccchhHHHhhccCC--------CCCchHHHHHHHHHHhcCCCCceEEEEecChhHhhc
Confidence 9997 46899999999999999852 367899999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009747 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||
T Consensus 141 m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~v~~qL 220 (264)
T 2g8o_A 141 MALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQL 220 (264)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCcceEEEEEEECCEEEEEEEhhhhHHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 221 ~r~p~~~P~l~i~~~~~~~~d~~~~df~l~~Y~~hp~ik~~~av 264 (264)
T 2g8o_A 221 SREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264 (264)
T ss_dssp TSCCCCCCEEEECCCCSSTTCCCGGGEEEESCCCCCCCCCCCCC
T ss_pred ccCCCCCCeeecCCCCCchhcCChhHEEEeCCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999998
No 16
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=100.00 E-value=5.7e-97 Score=740.74 Aligned_cols=267 Identities=48% Similarity=0.848 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhh------
Q 009747 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE------ 317 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~------ 317 (527)
|+||++||++||++|+.+.||||+||+|+||++|||||++|||++||||++||++++|||||++|+||+++|++
T Consensus 1 ~~qYl~l~~~Il~~G~~~~dRTG~gT~sifg~q~r~dl~~gfPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~~~~~~ 80 (286)
T 1tis_A 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL 80 (286)
T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHhhhcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCcccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEee
Q 009747 318 -KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAW 396 (527)
Q Consensus 318 -~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w 396 (527)
+||+|||+|++++|+++ .+++|++|++||+|||+|+ ++|||++||++||+||+|||+|+++|
T Consensus 81 ~~gv~iWd~~~~~~~l~~----~~~~GdlG~vYG~qwR~~~-------------~~DQi~~vI~~Lk~nP~SRR~ivs~W 143 (286)
T 1tis_A 81 IQGKTVWDENYENQAKDL----GYHSGELGPIYGKQWRDFG-------------GVDQIIEVIDRIKKLPNDRRQIVSAW 143 (286)
T ss_dssp SSSCCTTHHHHTTTTGGG----TCCTTBCCSCHHHHHHCBT-------------TBCHHHHHHHHHHHSTTCSCCBCCCC
T ss_pred ccCCcccccccccchhhh----cccCCcchhhhHHHHhcCC-------------cchHHHHHHHHHhcCCCCccEEEEec
Confidence 99999999999999987 3678999999999999996 48999999999999999999999999
Q ss_pred CccccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccch
Q 009747 397 NPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHV 476 (527)
Q Consensus 397 ~p~~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~ 476 (527)
||+++++|+|||||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+
T Consensus 144 np~dl~~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~ 223 (286)
T 1tis_A 144 NPAELKYMALPPCHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHV 223 (286)
T ss_dssp CGGGGGGCSSCCSEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCC
T ss_pred ChhHhhcCCCCCceEEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEeeeEeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcCCCCCCeEEeCCC------------CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 477 RPLEEQLQKLPKPFPILKINPE------------KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 477 ~~~~~~l~r~p~~~p~l~~~~~------------~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
|++++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+|||||||
T Consensus 224 e~v~~qL~R~p~~~P~l~i~~~~~~~~~~~~~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 286 (286)
T 1tis_A 224 EQCKEILRREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 (286)
T ss_dssp TTTGGGSSCCCCSCCCCEECCCCGGGGGSCHHHHHHHHHTCCGGGEECSSCCCCCCCCCCCCC
T ss_pred HHHHHHHcCCCCCCCeEEECCcccccccccccccCCchhcCCceeEEEeCCCCCCcCCcCccC
Confidence 9999999999999999999999 89999999999999999999999999998
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=100.00 E-value=6.9e-96 Score=754.35 Aligned_cols=267 Identities=53% Similarity=0.949 Sum_probs=239.9
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009747 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
.-.|+||++||++||++|+.+.||||+||+|+||++|||||++|||++||||++||++++|||||++|+||+++|+++||
T Consensus 94 ~g~~~~Yl~l~~~Il~~G~~~~dRTG~~T~s~fg~~~rfdl~~gfPllTtkk~~~k~~i~EllWfl~G~tn~~~L~~~gv 173 (360)
T 3ix6_A 94 IGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGV 173 (360)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhCcCCCCCCCccEEEeccceeEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccc
Q 009747 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~ 400 (527)
+|||+|+ +++||+|++||+|||+|++. +|+++|||++||++||+||+|||+|+++|||++
T Consensus 174 ~iWd~wa------------~~~g~lG~vYG~qwR~~~~~--------~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~d 233 (360)
T 3ix6_A 174 TIWDEWA------------DENGDLGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPAL 233 (360)
T ss_dssp CTTGGGC------------CTTSBCSSCHHHHHHHEECT--------TSCEECHHHHHHHHHHHCTTCSCCEEECCCHHH
T ss_pred Cccchhc------------ccCCCCccchhhhheeecCC--------CCCchHHHHHHHHHHhcCCCcceeEEEecChHH
Confidence 9999997 67899999999999999863 477899999999999999999999999999999
Q ss_pred cccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHH
Q 009747 401 LKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (527)
Q Consensus 401 ~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~ 480 (527)
+++|+|||||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|+++
T Consensus 234 l~~mal~PCh~~~qF~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~ 313 (360)
T 3ix6_A 234 VDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQAR 313 (360)
T ss_dssp HTTCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHH
T ss_pred hccCCCCCCcEEEEEEEeCCEEEEEEEehhhhHHHhhhhHHHHHHHHHHHHHHHhCCcceEEEEEEeeeEEeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 481 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 481 ~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
+||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 314 ~qL~R~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 360 (360)
T 3ix6_A 314 LQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 360 (360)
T ss_dssp HHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEEC-------------
T ss_pred HHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCcCCccccC
Confidence 99999999999999999999999999999999999999999999997
No 18
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00 E-value=6e-95 Score=725.18 Aligned_cols=266 Identities=39% Similarity=0.681 Sum_probs=257.8
Q ss_pred hhHHHHHHHHHHHHHcCccccC----------CCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHH-HHhCCC
Q 009747 242 HEEYLYLRLVQDIISDGNLKDD----------RTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLW-FISGST 310 (527)
Q Consensus 242 ~~~~~Yl~l~~~Il~~G~~~~d----------Rtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW-~l~G~~ 310 (527)
.+|+||+++|++||++|+.++| |||+||+|+||++|||| +++||++||||++||++++|||| |++|+|
T Consensus 2 ~~~~~Yl~l~~~Il~~G~~~~d~~~r~~~~~drTg~~T~s~fg~~~r~d-~~~fPllTtkk~~~k~~i~EllWifl~G~t 80 (278)
T 1bkp_A 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAWKTAIKELLWIWQLKSN 80 (278)
T ss_dssp CHHHHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEEC-SSSCCCCSSSCCCHHHHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHHHHHcCccCCCcccccccccCCCCCceEEecceEEEEc-cccccccccccccHHhhHHHHHHHHHcCCC
Confidence 4699999999999999998876 89999999999999999 99999999999999999999999 999999
Q ss_pred ChhHhhhcCcccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcc
Q 009747 311 NAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRR 390 (527)
Q Consensus 311 ~~~~l~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR 390 (527)
|+++|+++|++|||+|+ +++||+|++||+|||+|+.. ++|+++|||++||++||+||+|||
T Consensus 81 n~~~L~~~gv~iWd~w~------------~~~gdlG~vYG~qwr~~~~~-------~~g~~iDQi~~vI~~Lk~nP~SRR 141 (278)
T 1bkp_A 81 DVNDLNMMGVHIWDQWK------------QEDGTIGHAYGFQLGKKNRS-------LNGEKVDQVDYLLHQLKNNPSSRR 141 (278)
T ss_dssp BHHHHHTTTCCTTGGGC------------CTTSBCBSCTHHHHHCCCEE-------ETTEEECHHHHHHHHHHHSTTCSC
T ss_pred cHHHHHHhCCCcccccc------------ccCCcccccccHhhhhccCC-------CCCcchHHHHHHHHHHhcCCCCCc
Confidence 99999999999999997 57899999999999999632 346679999999999999999999
Q ss_pred eEEEeeCccccccCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHHHHHHHHHHHHHhcCCcceeEEEEECccc
Q 009747 391 IVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 470 (527)
Q Consensus 391 ~i~~~w~p~~~~~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~H 470 (527)
+|+++|||+++++|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|
T Consensus 142 ~ivs~wnp~dl~~m~lpPC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaH 221 (278)
T 1bkp_A 142 HITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCH 221 (278)
T ss_dssp CEEESCCTTTGGGBSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEE
T ss_pred EEEEecChhhhhccCCCCeeEEEEEEEECCEEEEEEEhhhhHHHhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009747 471 VYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 471 IY~~h~~~~~~~l~r~p~~~p~l~~~~~~~~~~d~~~~df~l~~Y~~~~~i~~~~av 527 (527)
||+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 222 IY~nh~e~v~~qL~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 278 (278)
T 1bkp_A 222 VYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278 (278)
T ss_dssp EEGGGHHHHHHHHHSCCCCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred EcHHHHHHHHHHhcCCCCCCCEEEECCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 999999999999999999999999999999999999999999999999999999998
No 19
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=100.00 E-value=1.1e-70 Score=544.28 Aligned_cols=220 Identities=21% Similarity=0.291 Sum_probs=209.6
Q ss_pred ChhHHHHHHHHHHHHHcCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009747 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
.+.+++|++++++|+++|. +.||||++|+|+||+++|||. |++ +||++||++++|||||++|+||+++|+++++
T Consensus 6 ~t~~~~y~~l~~~Il~~G~-~~drtg~~t~s~~g~~~r~~~----P~~-~kk~~~k~~i~EllWfl~G~tn~~~l~~~~~ 79 (246)
T 1b5e_A 6 MTVEEIRLHLGLALKEKDF-VVDKTGVKTIEIIGASFVADE----PFI-FGALNDEYIQRELEWYKSKSLFVKDIPGETP 79 (246)
T ss_dssp BCHHHHHHHHHHHHHTTCC-EECTTSCEEEEEEEEEEECCS----SCS-SSCCCHHHHHHHHHHHHHTCSBGGGSSSSCC
T ss_pred CCHHHHHHHHHHHHHHcCC-CcCCCCCceEEECcEEEEEcC----ccc-cccccHHHHHHHHHHHhhCCCcHHHHHhhcc
Confidence 5789999999999999995 999999999999999999983 999 8999999999999999999999999999999
Q ss_pred ccccCccchhhhhhcCCCCCCCCCCCCcccccccccccccccccCCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccc
Q 009747 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~ 400 (527)
+|||+|+ +++|++|++|| ||+|+. +++|||++||++||+||+|||+|+++|||.+
T Consensus 80 ~iwd~~~------------~~~g~lg~~YG--wR~~~~-----------~~~DQi~~vI~~Lk~nP~SRR~i~s~wnp~~ 134 (246)
T 1b5e_A 80 KIWQQVA------------SSKGEINSNYG--WAIWSE-----------DNYAQYDMCLAELGQNPDSRRGIMIYTRPSM 134 (246)
T ss_dssp HHHHHHS------------CTTSBCSCCHH--HHHHCG-----------GGTCHHHHHHHHHHHCTTCSCCEEECCCTTH
T ss_pred hhhhhhc------------ccCCCCCCCCC--eeECCC-----------CCchHHHHHHHHHhcCCCCCeEEEEecCchh
Confidence 9999996 56899999999 999973 3689999999999999999999999999998
Q ss_pred cc-----cCCCCCceeEEEEEEeCCeEEEEEEeecccccccccccHH-----HHHHHHHHHHHh--cCCcceeEEEEECc
Q 009747 401 LK-----LMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIA-----SYALLTCMIAHV--CDLAPGDFIHVIGD 468 (527)
Q Consensus 401 ~~-----~~~l~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~-----~~~~L~~~iA~~--~g~~~G~~~~~~~~ 468 (527)
+. +|+|||||.++||+|++|+|+|++||||||+++|+|||++ +|++|++|||++ ||+++|+|+|+++|
T Consensus 135 ~~d~~~~~m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~gd 214 (246)
T 1b5e_A 135 QFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGS 214 (246)
T ss_dssp HHHTTGGGCCCCCCEEEEEEEEETTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEE
T ss_pred hcccccccccCCceeEEEEEEEECCEEEEEEEhhhhhhhhhccchHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEEEe
Confidence 64 7999999999999999999999999999999999999999 999999999999 99999999999999
Q ss_pred ccccccchhhHHHHhhcCCCCCC
Q 009747 469 AHVYRNHVRPLEEQLQKLPKPFP 491 (527)
Q Consensus 469 ~HIY~~h~~~~~~~l~r~p~~~p 491 (527)
+|||+||+|++++||+|+|.+.+
T Consensus 215 aHIY~nh~e~~~~~L~r~~~~~~ 237 (246)
T 1b5e_A 215 LHVYSRHFYLVDHWWKTGETHIS 237 (246)
T ss_dssp EEEEGGGHHHHHHHHHHCCSCCC
T ss_pred EEEcHHHHHHHHHHHhhCCcccc
Confidence 99999999999999999998654
No 20
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=100.00 E-value=3.8e-43 Score=346.85 Aligned_cols=184 Identities=37% Similarity=0.641 Sum_probs=157.6
Q ss_pred CCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhc------cCCCCCCcEEEEccccccccCCCCCCCCCCcE
Q 009747 18 PNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGRLN 91 (527)
Q Consensus 18 ~~~mrki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~------~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~n 91 (527)
.+.||+|++|+|+|.||+||.+|+|||++|+||+||+++|++ +++|++.++||||||||||+|.+++|||+|.|
T Consensus 23 ~~~mr~i~lIvA~s~ng~IG~~g~LPW~lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~~rPLp~R~n 102 (240)
T 3rg9_A 23 RPPLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLN 102 (240)
T ss_dssp CCCCCCEEEEEEEETTCEEESSSSCSCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGGGSSCTTSEE
T ss_pred CCCCCeEEEEEEECCCCcEECCCCcCCCCHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhhccCCCCCeE
Confidence 677999999999999999999999999999999999999997 45678889999999999999976689999999
Q ss_pred EEEcCCCCCCC-----C--------CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCC---CcCEEE
Q 009747 92 VVLTRSGSFDI-----A--------TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDAIH 155 (527)
Q Consensus 92 iVlSrt~~~~~-----~--------~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~---lvDel~ 155 (527)
|||||+..... + ..+++.+++|+++|++.+++.+...+.++||||||++||+++|+++ +||+++
T Consensus 103 IVlSr~~~~~~~~~~~~~~~~~~~~~~~~v~v~~sl~eal~~l~~~~~~~~~~~I~VIGGa~IY~~~L~~~~~~l~D~l~ 182 (240)
T 3rg9_A 103 VVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIH 182 (240)
T ss_dssp EEECSSCCHHHHHTTCSSHHHHHHHGGGEEEESSCHHHHHHHTTSHHHHHHEEEEEECCCHHHHHHHTSTTGGGGEEEEE
T ss_pred EEEccCcccccccccccccccccccCCCCEEEECCHHHHHHHHhccccccCCCeEEEECCHHHHHHHHhcCccccCCEEE
Confidence 99999974310 0 0356889999999999987531000136899999999999999888 999999
Q ss_pred EEEEC-cccccCccC--CCCCCCC-----ceEeeeecC---cccCCccEEEEEEEEc
Q 009747 156 ITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFP---IVENNIRYCLSTYVRV 201 (527)
Q Consensus 156 lT~I~-~~~~gd~fF--P~~~~~~-----f~l~~~~~~---~~e~~~~~~f~~Y~r~ 201 (527)
||+|+ ..++||+|| |.++.+. |++++.+.. .+++++.|+|++|+|+
T Consensus 183 lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~f~~y~r~ 239 (240)
T 3rg9_A 183 RTVVRPASNSCSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPR 239 (240)
T ss_dssp EEEEESCCSSCCEECCCCCTTCCCTTSCCEEEEEECCCEECSSTTCCEEEEEEEEEC
T ss_pred EEEEcCCCcCcceecCCCCCChhhcccCceEEEEeeccccccCCCCCceEEEEEEeC
Confidence 99999 889999999 9998877 999875432 2469999999999997
No 21
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=100.00 E-value=3.6e-42 Score=333.54 Aligned_cols=181 Identities=39% Similarity=0.649 Sum_probs=155.1
Q ss_pred CCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhcc---CCCCCCcEEEEccccccccCCCCCCCCCCcEEEEc
Q 009747 19 NPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT---SDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLT 95 (527)
Q Consensus 19 ~~mrki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~---~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlS 95 (527)
+.|++|++|+|+|+||+||.+|+|||++|+|++||+++|+++ ++|++.++|||||||||++|.++|||++|+|||||
T Consensus 2 ~~~~~i~livA~s~dg~IG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~~~Pl~~r~niVlS 81 (206)
T 3nzb_X 2 NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVIT 81 (206)
T ss_dssp CCCSCEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGGGCSCTTSEEEEEC
T ss_pred CCCCEEEEEEEECCCCcEeCCCCcCCCChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhcccCCCCCeEEEEc
Confidence 569999999999999999999999999999999999999853 24556799999999999998656899999999999
Q ss_pred CCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCC---CCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCC-C
Q 009747 96 RSGSFDIATVENVVICGSIGSALELLAASPYCL---SIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIP-S 171 (527)
Q Consensus 96 rt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~---~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP-~ 171 (527)
|+... ...+++.+++|+++|++.+++..... ++++|||+||++||+++|++++||+++||+||..++||+||| .
T Consensus 82 r~~~~--~~~~~~~v~~sl~eal~~l~~~~~~~~~~~~~~i~ViGG~~iy~~~L~~~l~Del~lT~i~~~~~gd~~FP~~ 159 (206)
T 3nzb_X 82 RNESL--DLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLK 159 (206)
T ss_dssp SSCCC--CCCSSCEEESSHHHHHHHHHHHSCSSSSSEEEEEEECCCHHHHHHHHHSTTEEEEEEEEECSCCCCSEECSSC
T ss_pred cCCCC--CCCCCEEEECCHHHHHHHHhccccccccCCCCcEEEECcHHHHHHHhhCCCCCEEEEEEcccccCCCccCCcc
Confidence 99753 12356889999999999998641000 247899999999999999999999999999999999999999 8
Q ss_pred CCCC----CceEeeeec------------CcccCCccEEEEEEEEc
Q 009747 172 IDSS----VFQPWYSSF------------PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 172 ~~~~----~f~l~~~~~------------~~~e~~~~~~f~~Y~r~ 201 (527)
++.. .|++++.+. .++++++.|.|++|+|+
T Consensus 160 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~y~f~~y~r~ 205 (206)
T 3nzb_X 160 FRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD 205 (206)
T ss_dssp TTSGGGTTTCEECCHHHHHHHHTSCCCCSCEEETTEEEEEEEEECC
T ss_pred cCcccccCCcEEEEEeeccccccccccccccccCCeeEEEEEEEEc
Confidence 8753 699886432 34689999999999985
No 22
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=100.00 E-value=3.7e-41 Score=315.70 Aligned_cols=158 Identities=36% Similarity=0.637 Sum_probs=145.0
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009747 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~ 102 (527)
++++|+|+|+||+||++|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+|||+||+...
T Consensus 5 ~i~li~A~s~dg~Ig~~g~lpW~~~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 72 (165)
T 3s9u_A 5 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGY-- 72 (165)
T ss_dssp EEEEEEEEETTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHhhc-------CCEEEEcchHHhhhh---hccCCCeEEEECCCCcc--
Confidence 699999999999999999999999999999999998 899999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeee
Q 009747 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|++++++.+++. ++|||+||++||++|| ++||+++||+||..++||+|||.++...|++++.
T Consensus 73 -~~~~v~v~~~~~~al~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~ip~~~~Gd~~Fp~~~~~~~~l~~~ 143 (165)
T 3s9u_A 73 -HVEGCEVAHSVEEVFELCKNE------EEIFIFGGAQIYDLFL--PYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFV 143 (165)
T ss_dssp -CCTTCEEESSHHHHHHHTTTC------SEEEECCCHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCCTTEEEEEE
T ss_pred -CCCCEEEECCHHHHHHHhhcC------CCEEEECCHHHHHHHH--hhCCEEEEEEccccccCCCcCCCCChHHCEEEEE
Confidence 346788889999999998764 6899999999999999 8999999999999999999999998888999976
Q ss_pred ecC--cccCCccEEEEEEEEc
Q 009747 183 SFP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (527)
+.. .++|++.|+|++|+|+
T Consensus 144 ~~~~~~~~~~~~~~f~~y~r~ 164 (165)
T 3s9u_A 144 EKGLTDEKNPYTYYYHVYEKQ 164 (165)
T ss_dssp EECCCSSSSCSCEEEEEEEEC
T ss_pred EeccccCCCCceEEEEEEEEC
Confidence 543 4678899999999996
No 23
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=100.00 E-value=6.1e-41 Score=317.37 Aligned_cols=160 Identities=31% Similarity=0.546 Sum_probs=144.1
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009747 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~ 102 (527)
++++|+|+|+||+||++|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+|||+||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~lp~Dl~~Fk~~T~-------g~~vIMGRkTyesi~---~plp~R~niVlSr~~~~-- 69 (178)
T 3tq8_A 2 IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITL-------GKPIVMGRRTFDSIG---KPLPHRRNIVITQQKNL-- 69 (178)
T ss_dssp EEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCcCHHHHHHHHHhhc-------CCEEEEechHHhhhh---hccCCCeEEEEcCCCCc--
Confidence 599999999999999999999999999999999998 899999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeee
Q 009747 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|+++|++.+++. ++||||||++||+++| ++||+++||+||..++||+|||.++...|++++.
T Consensus 70 -~~~~v~v~~sl~eal~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~w~l~~~ 140 (178)
T 3tq8_A 70 -IIEGCDIFYSLDDALSALTKE------PEVIIIGGARIFKEAL--PKADKMILTIINHSFEGDVYFPEWNDKEWKITSQ 140 (178)
T ss_dssp -CCTTSEEESSHHHHHHHTTTC------SEEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCTTSEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhCC------CCEEEECCHHHHHHHH--HhCCEEEEEEccccccccCcCCCCChHHCEEEEE
Confidence 346788889999999998753 6999999999999999 5999999999999999999999999888999876
Q ss_pred ecC--cccCCccEEEEEEEEccc
Q 009747 183 SFP--IVENNIRYCLSTYVRVRS 203 (527)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~~~ 203 (527)
+.. .+++++.|+|++|+|+.+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~~~ 163 (178)
T 3tq8_A 141 IKHERDEKNPYPFQFLELRRLEN 163 (178)
T ss_dssp EEECCC--CCSCEEEEEEEECCC
T ss_pred EeccccccCCccEEEEEEEECCc
Confidence 542 356889999999999744
No 24
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=100.00 E-value=3.6e-41 Score=314.85 Aligned_cols=158 Identities=34% Similarity=0.576 Sum_probs=144.0
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009747 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~ 102 (527)
++++|+|+|+||+||++|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+|||+||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~~~~D~~~Fk~~t~-------g~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 69 (162)
T 3ia4_A 2 IVSMIAALANNRVIGLDNKMPWHLPAELQLFKRATL-------GKPIVMGRNTFESIG---RPLPGRLNIVLSRQTDY-- 69 (162)
T ss_dssp EEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECCCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHHhc-------CcEEEEEchHHhhhh---hhcCCCeEEEEcCCCCC--
Confidence 599999999999999999999999999999999998 799999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeee
Q 009747 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|++++++.+++. ++|||+||+++|+++| ++||+++||+||..++||+|||+++.+.|++++.
T Consensus 70 -~~~~~~v~~s~~~al~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~gd~~Fp~~~~~~w~~~~~ 140 (162)
T 3ia4_A 70 -QPEGVTVVATLEDAVVAAGDV------EELMIIGGATIYNQCL--AAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEH 140 (162)
T ss_dssp -CCTTSEEESSHHHHHHHHTTC------SEEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCGGGSCEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhCC------CCEEEECCHHHHHHHH--HhCCEEEEEEccccccccccCCCCChHHCEEEEE
Confidence 346778999999999998752 6899999999999999 6999999999999999999999998888999876
Q ss_pred ecC--cccCCccEEEEEEEEc
Q 009747 183 SFP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (527)
+.. .+++++.|+|++|+|+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~ 161 (162)
T 3ia4_A 141 ESYAADDKNPHNYRFSLLERV 161 (162)
T ss_dssp EEECCBTTBCSCEEEEEEEEC
T ss_pred EeccccCCCCccEEEEEEEEC
Confidence 542 3568899999999996
No 25
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=100.00 E-value=8.1e-41 Score=311.43 Aligned_cols=156 Identities=35% Similarity=0.652 Sum_probs=142.0
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009747 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~ 103 (527)
|++|+|+|+||+||++|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+|||+||+. .
T Consensus 2 i~li~A~s~~g~IG~~g~lpW~l~~D~~~Fk~~t~-------~~~vIMGRkT~esi~---~plp~r~~iVlSr~~-~--- 67 (159)
T 3dau_A 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIILSSQP-G--- 67 (159)
T ss_dssp EEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSSC-C---
T ss_pred EEEEEEECCCCeEECCCCcCcCChhHHHHHHHHhc-------CCeEEEechHHhhcc---cccCCCEEEEECCCC-C---
Confidence 89999999999999999999999999999999998 789999999999997 699999999999997 4
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeeee
Q 009747 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~~ 183 (527)
..+++.+++|+++|++.++. .++|||+||++||+++| ++||+++||+||..++||+|||.++.+.|++++.+
T Consensus 68 ~~~~~~v~~s~~~al~~~~~------~~~i~iiGG~~iy~~~l--~~~D~l~lT~i~~~~~Gd~~Fp~~~~~~~~~~~~~ 139 (159)
T 3dau_A 68 TDDRVTWVKSVDEAIAACGD------VPEIMVIGGGRVYEQFL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139 (159)
T ss_dssp SCTTSEEESSHHHHHHTTCS------CSCEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCCCGGGEEEEEEE
T ss_pred CCCCeEEECCHHHHHHHhcC------CCCEEEECCHHHHHHHH--hhCCEEEEEEcccccCccccCCCCChHHCEEEEEE
Confidence 34678889999999998753 47899999999999999 69999999999999999999999998889998764
Q ss_pred cC--cccCCccEEEEEEEEc
Q 009747 184 FP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (527)
.. .++|++.|+|++|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 3dau_A 140 FHDADAQNSHSYCFEILERR 159 (159)
T ss_dssp EECCBTTBSSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEC
Confidence 32 3578999999999985
No 26
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=100.00 E-value=6.8e-40 Score=313.44 Aligned_cols=162 Identities=31% Similarity=0.537 Sum_probs=146.9
Q ss_pred CceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009747 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~ 100 (527)
||+|++|+|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||+++. ||||+|+|||+||+...
T Consensus 22 ~r~i~~i~A~s~dG~IG~~g~lpW~~~~D~~~fk~~t~-------~~~vIMGRkTyesi~~--~plp~r~~iVlSr~~~~ 92 (190)
T 3ix9_A 22 TKKIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTL-------NHAILMGRVTFDGMGR--RLLPKRETLILTRNPEE 92 (190)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHTTT--CCCTTCEEEEECCSCCS
T ss_pred ceeEEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHhc-------CCeEEEcCcchhhcCc--cCCCCCEEEEEcCCCCC
Confidence 78899999999999999999999999999999999998 8999999999999974 79999999999999854
Q ss_pred CCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCC-CCCCCceE
Q 009747 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPS-IDSSVFQP 179 (527)
Q Consensus 101 ~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~-~~~~~f~l 179 (527)
..+++.+++|++++++.++++ +++|||+||++||++|| ++|||++||+||+..+||+|||. ++...|++
T Consensus 93 ---~~~~~~v~~~~~eal~~lk~~-----~~~i~ViGG~~ly~~~l--~liDel~lt~ip~~g~Gd~lFp~~~~~~~~~l 162 (190)
T 3ix9_A 93 ---KIDGVATFHDVQSVLDWYSAQ-----EKNLYIVGGKQIFQAFE--PYLDEVIVTHIHARVEGDTYFPAEFDLSLFET 162 (190)
T ss_dssp ---CCSSSEEESSHHHHHHHHHTS-----CSCEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCCGGGEEE
T ss_pred ---CCCCEEEECCHHHHHHHHHhC-----CCCEEEECCHHHHHHHH--hhCCEEEEEEeCcccccCCcCCCCCCccccEE
Confidence 345677889999999999875 47899999999999999 69999999999999999999999 88778999
Q ss_pred eeeecC--cccCCccEEEEEEEEc
Q 009747 180 WYSSFP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 180 ~~~~~~--~~e~~~~~~f~~Y~r~ 201 (527)
++.+.. .+++++.|+|++|+|+
T Consensus 163 v~~~~~~~~~~~~~~~~f~~y~r~ 186 (190)
T 3ix9_A 163 VSSKFYTKDEKNPYDFTIQYRKRK 186 (190)
T ss_dssp EEEEEECCBTTBCSCEEEEEEEEC
T ss_pred EEEEeccCCCcCCceEEEEEEEEe
Confidence 876543 3578889999999996
No 27
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=100.00 E-value=4.9e-40 Score=313.67 Aligned_cols=178 Identities=35% Similarity=0.618 Sum_probs=156.4
Q ss_pred CceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 009747 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (527)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW-~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~ 99 (527)
.|+|++++|+|+||+||.+|+||| ++|+|+++|+++|.+..+|++.++|||||||||+++.++|||++|+|||+||++.
T Consensus 1 ~r~i~~i~A~s~dG~Ig~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~~~~pl~~r~~iVlSr~~~ 80 (186)
T 1kmv_A 1 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK 80 (186)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCS
T ss_pred CceEEEEEEECCCCCEeCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCcccCCCCCCeEEEECCCCc
Confidence 378999999999999999999999 9999999999999876667778899999999999985568999999999999975
Q ss_pred CCCCCCCCE-EEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCce
Q 009747 100 FDIATVENV-VICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178 (527)
Q Consensus 100 ~~~~~~~~~-~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~ 178 (527)
. ..+++ ++++|++++++.|+++++..++++|||+||+++|+++|++++|||++||++|..++||+|||.++...|+
T Consensus 81 ~---~~~~~~~v~~~~~~al~~lk~~~~~~~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~~g~d~~Fp~~~~~~~~ 157 (186)
T 1kmv_A 81 E---PPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK 157 (186)
T ss_dssp S---CCTTCSEEESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHHTSCSCEEEEEEEESSCCCCSEECCCCCTTTCE
T ss_pred c---CCCCCEEEECCHHHHHHHHhhcccccCCCeEEEEcCHHHHHHHhcCCCCCEEEEEEeCcccCCCeECCCCChhHcE
Confidence 3 33466 8889999999999875322346899999999999999999999999999999999999999998878899
Q ss_pred Eeeee-----cCcccCCccEEEEEEEEc
Q 009747 179 PWYSS-----FPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 179 l~~~~-----~~~~e~~~~~~f~~Y~r~ 201 (527)
+++.. ...+++++.|+|++|+|+
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~f~~y~r~ 185 (186)
T 1kmv_A 158 LLPEYPGVLSDVQEEKGIKYKFEVYEKN 185 (186)
T ss_dssp ECSCCTTCCCSCEEETTEEEEEEEEEEC
T ss_pred EEEeccccccccccCCCceEEEEEEEEC
Confidence 98652 234678999999999995
No 28
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=100.00 E-value=1e-39 Score=305.07 Aligned_cols=159 Identities=28% Similarity=0.486 Sum_probs=144.2
Q ss_pred EEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCC
Q 009747 25 QVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIAT 104 (527)
Q Consensus 25 ~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~~ 104 (527)
++|+|+|+||+||++|+|||++|+|++||+++|+ +++|||||||||+++. +|||+|+|||+||++.. .
T Consensus 2 ~li~A~s~dg~IG~~g~lpW~~~~D~~~F~~~t~-------~~~viMGRkTyes~~~--~plp~r~~iVlS~~~~~---~ 69 (162)
T 3dfr_A 2 AFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTV-------GKIMVVGRRTYESFPK--RPLPERTNVVLTHQEDY---Q 69 (162)
T ss_dssp EEEEEECTTCEEEBTTBCSSCCHHHHHHHHHTTT-------TSEEEEEHHHHHHSSS--SSCTTSEEEEECSCTTC---C
T ss_pred EEEEEECCCCeEeCCCCCCCCcHHHHHHHHHHhc-------CCeEEEecchhhhccc--ccCCCCcEEEEcCCCCC---C
Confidence 5899999999999999999999999999999998 8999999999999973 69999999999999854 4
Q ss_pred CCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeeeec
Q 009747 105 VENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF 184 (527)
Q Consensus 105 ~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~~~ 184 (527)
++++.+++|++++++.++++ ++++|||+||+++|+++| ++|||++||+||..++||+|||.++...|++++.+.
T Consensus 70 ~~~~~~~~~~~~~l~~lk~~----~~~~i~viGG~~l~~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~~~l~~~~~ 143 (162)
T 3dfr_A 70 AQGAVVVHDVAAVFAYAKQH----LDQELVIAGGAQIFTAFK--DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRT 143 (162)
T ss_dssp CTTSEEESSHHHHHHHHHHC----CSSCEEECCCHHHHHHTG--GGCCEEEEEEESSCCCCSEECCCCCGGGEEEEEEEE
T ss_pred CCCEEEECCHHHHHHHHhcC----CCCCEEEECCHHHHHHHH--hhCCEEEEEEecccccccCcCCCCChhHcEEEEEEc
Confidence 56777779999999999986 368999999999999999 799999999999999999999999877899987654
Q ss_pred -CcccCCccEEEEEEEEc
Q 009747 185 -PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 185 -~~~e~~~~~~f~~Y~r~ 201 (527)
..+++++.|.|++|+|+
T Consensus 144 ~~~~~~~~~~~f~~y~r~ 161 (162)
T 3dfr_A 144 VEDTNPALTHTYEVWQKK 161 (162)
T ss_dssp ECCSSGGGCEEEEEEEEC
T ss_pred ccccCCCceEEEEEEEEC
Confidence 34578899999999996
No 29
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=100.00 E-value=1.8e-39 Score=319.98 Aligned_cols=174 Identities=33% Similarity=0.522 Sum_probs=151.9
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccC--------------------------------------CC
Q 009747 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITS--------------------------------------DA 63 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW-~~p~D~~~F~~~T~~~~--------------------------------------~p 63 (527)
++++++|++.+|+||++|+||| ++|+||+||+++|++++ .+
T Consensus 26 ~~~~~~~~~~~~~IG~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~ 105 (238)
T 2bl9_A 26 TKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNAD 105 (238)
T ss_dssp SCCCTTCSCSSCEEEBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC---------------------
T ss_pred cEEEEEEecCCCeecCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCccccccccccccccccc
Confidence 4778899999999999999999 89999999999998431 13
Q ss_pred CCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHH
Q 009747 64 GKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (527)
Q Consensus 64 ~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~ 143 (527)
+.+++||||||||||+|.++||||+|+|||+||+.... ..++++.+++|+++|++.|++. ++++|||+||++||+
T Consensus 106 ~~g~~VIMGRkTyEsi~~~~~PLp~R~nIVlSr~~~~~-~~~~~v~v~~sl~eal~~lk~~----~~~~I~ViGGa~Iy~ 180 (238)
T 2bl9_A 106 KLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKE-DVKEKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQVYR 180 (238)
T ss_dssp CCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCTT-TCCSSCEEESCHHHHHHHHHTC----CCSCEEEEECHHHHH
T ss_pred ccCCEEEEchhHhhhhcccccCcCCCEEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCCEEEECcHHHHH
Confidence 44799999999999998556899999999999997431 1246788889999999999875 367999999999999
Q ss_pred HHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeeeecCcccCCccEEEEEEEEc
Q 009747 144 EALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 144 ~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
++|++++||+++||+||..++||+|||.++...|++++.+.+..++++.|+|++|+|+
T Consensus 181 ~~L~~glvDel~lT~ip~~~gGD~~FP~~d~~~~~lv~~~~~~~~~~~~~~f~~y~r~ 238 (238)
T 2bl9_A 181 ECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV 238 (238)
T ss_dssp HHHHTTCCSEEEEEEEEEEECCSEECCCCCGGGEEEEEECCCEEETTEEEEEEEEEEC
T ss_pred HHhcccCCCEEEEEEeccccCCceeCCCCCchhcEEEEEEecccCCCccEEEEEEEeC
Confidence 9999999999999999999999999999987789999877666789999999999985
No 30
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=100.00 E-value=7.4e-38 Score=293.90 Aligned_cols=160 Identities=39% Similarity=0.660 Sum_probs=139.3
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009747 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~ 102 (527)
++++++|+|+||+||.+|+|||++|+|+++|++.|. +++|||||||||+++.++||||+|+|||+||++..
T Consensus 5 ~i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iV~S~~~~~-- 75 (167)
T 2w3w_A 5 EVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTM-------GHTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDF-- 75 (167)
T ss_dssp CCEEEEEEETTSEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcCcCCCCcCccchHHHHHHHHHhc-------CCeEEEcchHhhhcCccccCCCCCeEEEEeCCCCC--
Confidence 499999999999999999999999999999999997 78999999999999854589999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc---ccCccCCCCCCCCceE
Q 009747 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQP 179 (527)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~---~gd~fFP~~~~~~f~l 179 (527)
..+++.+++|+++++ .+++ ++++|||+||+++|+++| ++|||++||++|..+ +||+|||.++.. |++
T Consensus 76 -~~~~~~~~~~~~~~l-~l~~-----~~~~i~ViGG~~l~~~~l--~lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~~l 145 (167)
T 2w3w_A 76 -VAEGARVAGSLEAAL-AYAG-----SDPAPWVIGGAQIYLLAL--PHATRCEVTEIEIDLRRDDDDALAPALDDS-WVG 145 (167)
T ss_dssp -CCTTSEEESSHHHHH-HHTT-----TCSSCEEEECHHHHHHHG--GGCSEEEEEEEECCCCCCTTSEECCCCCTT-CEE
T ss_pred -CCCCEEEECCHHHHH-Hhhc-----CCCeEEEEchHHHHHHHH--HHCCEEEEEEEEeecCCCCccEeCCCCCcc-cEE
Confidence 345778888999999 5553 268999999999999999 499999999999999 899999998876 999
Q ss_pred eeeecCcccCCccEEEEEEEEc
Q 009747 180 WYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 180 ~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
........++++.|+|++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~f~~y~r~ 167 (167)
T 2w3w_A 146 ETGEWLASRSGLRYRFHSYRRD 167 (167)
T ss_dssp EECCCEECTTSCEEEEEEEEC-
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 3322234566799999999984
No 31
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=100.00 E-value=3e-37 Score=288.73 Aligned_cols=158 Identities=35% Similarity=0.597 Sum_probs=142.4
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009747 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~ 103 (527)
+++++|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||+++ ||||+|+|||+||++..
T Consensus 2 i~~~~A~s~dG~Ig~~g~l~W~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~--- 68 (164)
T 1zdr_A 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTM-------GHAIVMGRKTFEAIG---RPLPGRDNVVVTGNRSF--- 68 (164)
T ss_dssp EEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC---
T ss_pred EEEEEEEcCCCeEeCCCCcccCCHHHHHHHHHHhc-------CCEEEECCcHHhcCC---CCCCCCeEEEEcCCCCc---
Confidence 89999999999999999999999999999999997 899999999999997 89999999999999754
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeeee
Q 009747 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~~ 183 (527)
..+++.+++|++++++.+++. +++|||+||+++|+++| ++|||++||++|..++||+|||.++...|++++.+
T Consensus 69 ~~~~~~~~~~~~~~l~~l~~~-----~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~~~ 141 (164)
T 1zdr_A 69 RPEGCLVLHSLEEVKQWIASR-----ADEVFIIGGAELFRATM--PIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYT 141 (164)
T ss_dssp CCTTCEEECSHHHHHHHHHTC-----CSCEEEEECHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCTTTEEEEEEE
T ss_pred CCCCeEEECCHHHHHHHHhcC-----CCeEEEECcHHHHHHHH--HhCCEEEEEEeccccCCcEECCCCChhHcEEEEEE
Confidence 345777788999999999863 47899999999999999 59999999999999999999999887789998765
Q ss_pred cC--cccCCccEEEEEEEEc
Q 009747 184 FP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (527)
.. .++++++|+|++|+|+
T Consensus 142 ~~~~~~~~~~~~~~~~Y~r~ 161 (164)
T 1zdr_A 142 PGGKDEKNPYEHAFIIYERK 161 (164)
T ss_dssp ECCCSSSSCSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEc
Confidence 42 3457789999999996
No 32
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=100.00 E-value=1.5e-38 Score=319.60 Aligned_cols=179 Identities=30% Similarity=0.505 Sum_probs=152.4
Q ss_pred ceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccCC----------------------------CCCCcEEEEc
Q 009747 22 RSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSD----------------------------AGKRNAVIMG 72 (527)
Q Consensus 22 rki~livAvs~dG~IG~~g~lpW-~~p~D~~~F~~~T~~~~~----------------------------p~~~~~vIMG 72 (527)
+++++|+|++.||+||.+|.||| ++|+||+||+++|+++++ ++.+++||||
T Consensus 26 ~~~~~i~a~~~n~~IG~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f~~~ig~~VIMG 105 (280)
T 1j3k_A 26 GKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMG 105 (280)
T ss_dssp CGGGCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCCEEEEE
T ss_pred ccEEEEEEecCCceeccCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhhccccCCEEEEc
Confidence 35778999999999999999999 999999999999984221 1336999999
Q ss_pred cccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcC
Q 009747 73 RKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECD 152 (527)
Q Consensus 73 RkTyeslp~~~~pl~~R~niVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvD 152 (527)
|||||++|.++||||+|+||||||++... ..++++.+++|+++|++.|++. .+++|||+||++||++||++++||
T Consensus 106 RkTyEsip~~~~PLp~R~nIVlSr~~~~~-~~~~~v~vv~sl~eal~~lk~~----~~~~I~ViGGa~ly~~~L~~glvD 180 (280)
T 1j3k_A 106 RTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLIK 180 (280)
T ss_dssp HHHHHHSCGGGCSCTTSEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCCS
T ss_pred chHhhhhcccccCcCCCeEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHhcCccCC
Confidence 99999998556899999999999997431 1246788888999999999875 367999999999999999999999
Q ss_pred EEEEEEECcccccCccCCCCCCCCceEeeeecCcccCCccEEEEEEEEcccch
Q 009747 153 AIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAA 205 (527)
Q Consensus 153 el~lT~I~~~~~gd~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~ 205 (527)
+++||+||..++||+|||.++...|++++.+....++++.|+|++|+|+++.+
T Consensus 181 el~LT~Ip~~lgGD~~FP~~d~~~~~lv~~~~~~~~~g~~~~f~~Y~R~~~~~ 233 (280)
T 1j3k_A 181 KIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKM 233 (280)
T ss_dssp EEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC--
T ss_pred EEEEEEeccccCCceeCCCCChhhcEEEEEEeeccCCCceEEEEEEEECCccc
Confidence 99999999999999999999878899987765455688899999999985444
No 33
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=100.00 E-value=3.8e-37 Score=286.72 Aligned_cols=155 Identities=36% Similarity=0.549 Sum_probs=138.7
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009747 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~ 102 (527)
++++++|+|+||+||.+|+|||++|+|+++|+++|. +++|||||||||+++ ||||+|+|||+||++..
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~---~pl~~r~~iV~S~~~~~-- 69 (159)
T 2w9h_A 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG---KPLPNRRNVVLTSDTSF-- 69 (159)
T ss_dssp CEEEEEEECTTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCeEcCCCccCccchHHHHHHHHHhc-------CCEEEECCChhhccc---ccCCCCEEEEEcCCCCc--
Confidence 499999999999999999999999999999999997 899999999999997 79999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEeee
Q 009747 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|++++++. +++|||+||+++|+++| ++|||++||++|..++||+|||.++...|++++.
T Consensus 70 -~~~~~~~~~~~~~~l~~---------~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~Gd~~Fp~~~~~~~~l~~~ 137 (159)
T 2w9h_A 70 -NVEGVDVIHSIEDIYQL---------PGHVFIFGGQTLFEEMI--DKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASS 137 (159)
T ss_dssp -CCTTCEEECSGGGGGGS---------CSCEEEEECHHHHHHHT--TTCSEEEEEEECSCCCCSEECCCCCTTTEEEEEE
T ss_pred -CCCCeEEECCHHHHHhc---------CCcEEEEChHHHHHHHH--HhCCEEEEEEecccccCCeeCCCCChhHcEEEEE
Confidence 34567788899999875 26899999999999999 6999999999999999999999988778999876
Q ss_pred ecC--cccCCccEEEEEEEEc
Q 009747 183 SFP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (527)
+.. +++++++|.|++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~Y~r~ 158 (159)
T 2w9h_A 138 VEGKLDEKNTIPHTFLHLIRK 158 (159)
T ss_dssp EECCCBTTBCSCEEEEEEEEC
T ss_pred EeccccccCCccEEEEEEEEC
Confidence 542 3457789999999986
No 34
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=100.00 E-value=8.6e-37 Score=284.85 Aligned_cols=156 Identities=28% Similarity=0.498 Sum_probs=139.3
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCC
Q 009747 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFD 101 (527)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW-~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~ 101 (527)
++++++|+|+||+||.+|+||| ++|+|++||+++|+ +++|||||||||+++ ||||+|+|||+||+...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~l~W~~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~- 70 (162)
T 1vdr_A 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIA-------DDPVVLGRTTFESMR---DDLPGSAQIVMSRSERS- 70 (162)
T ss_dssp CEEEEEEEEETSEEEBTTBCSSCCCHHHHHHHHHHTS-------SSCEEEEHHHHHHTT---TSCCSSSEEEECSSCCC-
T ss_pred EEEEEEEEcCCCcEECCCCccccCChHHHHHHHHhhC-------CCEEEEcchHHhhCC---ccCCcCeEEEEcCCCcc-
Confidence 5999999999999999999999 99999999999997 899999999999997 79999999999999751
Q ss_pred CCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccccCccCCCCCCCCceEee
Q 009747 102 IATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWY 181 (527)
Q Consensus 102 ~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~gd~fFP~~~~~~f~l~~ 181 (527)
..++++.+++|++++++.++++ ++++|||+||+++|+++| ++|||++||++|..++||+|||.++...|++++
T Consensus 71 -~~~~~~~~~~~~~~~l~~l~~~----~~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~ 143 (162)
T 1vdr_A 71 -FSVDTAHRAASVEEAVDIAASL----DAETAYVIGGAAIYALFQ--PHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDA 143 (162)
T ss_dssp -CCSSSCCEESSHHHHHHHHHHT----TCSCEEEEECHHHHHHHG--GGCSEEEEEEEEEECCCSEECCCCCTTTEEEEE
T ss_pred -cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHH--HhCCEEEEEEEccccccCEECCCCCchHCEEEE
Confidence 1445677778999999999875 368999999999999999 599999999999999999999998877899986
Q ss_pred eecCcccCCccEEEEEEEEc
Q 009747 182 SSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 182 ~~~~~~e~~~~~~f~~Y~r~ 201 (527)
.+.. .+|.|++|+|+
T Consensus 144 ~~~~-----~~~~~~~Y~~~ 158 (162)
T 1vdr_A 144 ETDH-----EGFTLQEWVRS 158 (162)
T ss_dssp EEEC-----SSCEEEEEEEC
T ss_pred EecC-----CCEEEEEEEEC
Confidence 6431 16899999986
No 35
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=100.00 E-value=8.1e-37 Score=284.64 Aligned_cols=154 Identities=36% Similarity=0.691 Sum_probs=136.3
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009747 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~~~~ 103 (527)
+++++|+|+||+||.+|+|||++|+|+++|+++|. +++|||||||||++|.++||||+|+|||+||++..
T Consensus 2 i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~--- 71 (159)
T 1df7_A 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITM-------GHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADF--- 71 (159)
T ss_dssp EEEEEEEETTSEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSSTTC---
T ss_pred EEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHHC-------CCEEEEeChHHhhcccccCCCCcCEEEEEeCCCCc---
Confidence 89999999999999999999999999999999997 68999999999999855689999999999999753
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc---ccCccCCCCCCCCceEe
Q 009747 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQPW 180 (527)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~---~gd~fFP~~~~~~f~l~ 180 (527)
..+++.+++|++++++ . ++|||+||+++|+++| ++|||++||++|..+ +||+|||.++.. | ++
T Consensus 72 ~~~~~~~~~~~~~~l~----~------~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~-~~ 137 (159)
T 1df7_A 72 MASGAEVVGSLEEALT----S------PETWVIGGGQVYALAL--PYATRCEVTEVDIGLPREAGDALAPVLDET-W-RG 137 (159)
T ss_dssp CCTTSEEESSHHHHTT----S------SSEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCCTTCEECCCCCTT-C-EE
T ss_pred CCCCEEEECCHHHHhc----C------CcEEEECcHHHHHHHH--HHCCEEEEEEEeeecCCCCccEeCCCCCcc-c-EE
Confidence 3457778889999987 2 5899999999999999 499999999999999 899999998876 9 77
Q ss_pred eeec-CcccCCccEEEEEEEEc
Q 009747 181 YSSF-PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 181 ~~~~-~~~e~~~~~~f~~Y~r~ 201 (527)
+.+. ...++++.|+|++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 1df7_A 138 ETGEWRFSRSGLRYRLYSYHRS 159 (159)
T ss_dssp EECCCEECTTSCEEEEEEEECC
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 6543 34566799999999984
No 36
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=100.00 E-value=1.1e-36 Score=298.98 Aligned_cols=177 Identities=36% Similarity=0.575 Sum_probs=146.2
Q ss_pred ceEEEEEEEeCCCee-ecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009747 22 RSYQVVVAATRDMGI-GKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 22 rki~livAvs~dG~I-G~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~ 100 (527)
+++++|+|+|+||+| |.+|+|||++++|++||+++|++.++|++.++|||||||||++|.+++||++|+|||+||+...
T Consensus 4 ~~i~livA~Sldg~iiG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~wrPlp~r~~iVlSr~~~~ 83 (227)
T 3cse_A 4 VPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDG 83 (227)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTSSS
T ss_pred cEEEEEEEEcCCCCEECCCCCcCCCChHHHHHHHHHHccCCcccccCEEEECchhhhcccccccCCCcCeEEEEeCCCcc
Confidence 579999999966655 8899999999999999999998666677789999999999999854459999999999999743
Q ss_pred CCC-CCCCEEEECCHHHHHHHHhcCC-CCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcc----cc-cCccCC-CC
Q 009747 101 DIA-TVENVVICGSIGSALELLAASP-YCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IE-CDTFIP-SI 172 (527)
Q Consensus 101 ~~~-~~~~~~v~~sl~eai~~l~~~~-~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~----~~-gd~fFP-~~ 172 (527)
... .++++++++|+++|++.|++.. ...++++|||+||++||++|| ++||+++||+||.. ++ ||+||| .+
T Consensus 84 ~~~~~~~~~~v~~sl~~al~~lk~~~~~~~~~~~I~ViGG~~ly~~~L--~lvDel~lT~ip~~lG~G~~~gD~~Fp~~~ 161 (227)
T 3cse_A 84 ELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQKQE 161 (227)
T ss_dssp SCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECCCHHHHHHHT--TTCSEEEEEEEEECTTSCCCCCSEECCHHH
T ss_pred ccccCCCCEEEeCCHHHHHHHHHhhhcccCCCCeEEEEcCHHHHHHHH--HhCCEEEEEEEEccccCCCccccccCCCCC
Confidence 110 1356889999999999997630 001357999999999999999 99999999999998 66 999999 67
Q ss_pred CCCCceEeeee--------------c--------------CcccCCccEEEEEEEEc
Q 009747 173 DSSVFQPWYSS--------------F--------------PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 173 ~~~~f~l~~~~--------------~--------------~~~e~~~~~~f~~Y~r~ 201 (527)
+...|++ +.+ . .++|+|+.|.|++|+|+
T Consensus 162 ~~~~w~l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~y~f~~~~r~ 217 (227)
T 3cse_A 162 LEQRFYD-NSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKK 217 (227)
T ss_dssp HHHHEEE-CGGGHHHHSCTTCCCSSCCEEEEETTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ChhhcEe-chhhhhhhcCccccCCccccccccccccccccceeECCEEEEEEEEEEe
Confidence 6566877 321 1 45689999999999997
No 37
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=100.00 E-value=3.7e-36 Score=288.33 Aligned_cols=172 Identities=40% Similarity=0.669 Sum_probs=144.9
Q ss_pred ceEEEEEEEeCCCe-eecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009747 22 RSYQVVVAATRDMG-IGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 22 rki~livAvs~dG~-IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~~ 100 (527)
+++++++|+|+||+ ||.+|+|||++++|++||+++|++..++++.++|||||||||+++.++|||++|+|||+||++..
T Consensus 4 ~~i~~i~A~sldg~iig~~g~lpW~~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~ 83 (192)
T 1aoe_A 4 PNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYEN 83 (192)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTCCC
T ss_pred CEEEEEEEEcCCCCeECCCCCCCCCChhHHHHHHHHhcCCCcccCCCEEEECchHhhcccccccCCCCCeEEEEcCCCcc
Confidence 67999999996655 58899999999999999999998544556679999999999999854469999999999998742
Q ss_pred CCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcc----cccCccCCCCCCCC
Q 009747 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IECDTFIPSIDSSV 176 (527)
Q Consensus 101 ~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~----~~gd~fFP~~~~~~ 176 (527)
. ..++++++++|++++++. ++ ++++|||+||++||++||++++|||++||++|.. ++||+|||. +...
T Consensus 84 ~-~~~~~~~v~~~~~~al~~-~~-----~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~lG~G~~gd~~fp~-~~~~ 155 (192)
T 1aoe_A 84 E-IIDDNIIHASSIESSLNL-VS-----DVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKF-PLES 155 (192)
T ss_dssp E-EEETTEEEESSHHHHHHT-CC-----SEEEEEECCCHHHHHHHTTSTTEEEEEEEEEECSCGGGSCCCEECCC-CGGG
T ss_pred c-cCCCCEEEECCHHHHHHh-hc-----CCCeEEEEcCHHHHHHHhcCCCCCEEEEEEEEcccCCCCccceECCC-ChHH
Confidence 1 124578899999999987 53 2579999999999999999999999999999999 789999994 3467
Q ss_pred ceEeeee------------cCcccCCccEEEEEEEEc
Q 009747 177 FQPWYSS------------FPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 177 f~l~~~~------------~~~~e~~~~~~f~~Y~r~ 201 (527)
|++++.+ ..++++++.|+|++|+|+
T Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~y~r~ 192 (192)
T 1aoe_A 156 WTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192 (192)
T ss_dssp EEECCHHHHHHHHTTCCCCSSEEETTEEEEEEEEEEC
T ss_pred cEEEeeeccccccccccccccccCCCeeEEEEEEEEC
Confidence 9987543 234578999999999984
No 38
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=99.97 E-value=2.1e-31 Score=255.58 Aligned_cols=131 Identities=28% Similarity=0.455 Sum_probs=111.5
Q ss_pred EEEEEEEeC--------CCeeecCCCCCC-CChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEE
Q 009747 24 YQVVVAATR--------DMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVL 94 (527)
Q Consensus 24 i~livAvs~--------dG~IG~~g~lpW-~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVl 94 (527)
|++|+|+|+ ||+||.+|+||| ++|+|++||+++|+ +++|||||||||++| .|||+|+|||+
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG~~g~lpW~~l~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~R~~iVl 71 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTE-------GTIMIMGAKTFQSLP---TLLPGRSHIVV 71 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEBTTBCTTCCCHHHHHHHHHHHT-------TSEEEEEHHHHHTCS---SCCTTSCEEEE
T ss_pred EEEEEEEcCccccCCCcCCeECCCCCCCCcCChHHHHHHHHHhc-------CCEEEEchhHhhhcc---cccCCCcEEEE
Confidence 899999999 999999999999 89999999999998 799999999999998 48999999999
Q ss_pred cCCCCCCC--CCC-----------------CCEEEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEE
Q 009747 95 TRSGSFDI--ATV-----------------ENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIH 155 (527)
Q Consensus 95 Srt~~~~~--~~~-----------------~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~ 155 (527)
||++.... ... ++.++.+|++++++.+++. +++|||+||++||+++| ++||+++
T Consensus 72 Sr~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~sl~eal~~lk~~-----~~~I~ViGG~~ly~~~L--~lvDel~ 144 (193)
T 1juv_A 72 CDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQ-----NSKVSVIGGPALLYAAL--PYADEVV 144 (193)
T ss_dssp CCTTSCCCCCTTCCCCSEEECHHHHHHHHTTCCEEEECTTSSCEEEECT-----TSCEEEEECHHHHHHHG--GGCSEEE
T ss_pred cCCCcccccccccccceeecccccccccccccceecCCHHHHHHHHHcC-----CCcEEEECcHHHHHHHH--HhCCEEE
Confidence 99862210 011 1225677888887777642 57899999999999999 8999999
Q ss_pred EEEEC--cccccCccCCC
Q 009747 156 ITEIE--TRIECDTFIPS 171 (527)
Q Consensus 156 lT~I~--~~~~gd~fFP~ 171 (527)
||+|| ..++||+|||.
T Consensus 145 lT~ip~~~~~~gd~~F~~ 162 (193)
T 1juv_A 145 VSRIVKRHRVNSTVQLDA 162 (193)
T ss_dssp EEEEEESSCCCCSEEECH
T ss_pred EEEeccccccCCCeecCh
Confidence 99998 45699999993
No 39
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.96 E-value=1.1e-28 Score=231.04 Aligned_cols=162 Identities=27% Similarity=0.333 Sum_probs=136.2
Q ss_pred ceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC-C
Q 009747 22 RSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS-F 100 (527)
Q Consensus 22 rki~livAvs~dG~IG~~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~R~niVlSrt~~-~ 100 (527)
||+++++|+|+||+||..++ ||+.++|+++|++++.. .++|||||+||++++ ||+++++++|+||++. .
T Consensus 1 ~kv~l~~A~slDG~Ia~~~~-~W~~~~~~~~~~~~~~~------~dailmGr~T~~~l~---~p~~~~~~~V~s~~~~~~ 70 (168)
T 1cz3_A 1 AKVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTE------IGNVVMGRITFEEIG---RPLPERLNVVLTRRPKTS 70 (168)
T ss_dssp CEEEEEEEECTTCEEECSCT-TCSCHHHHHHHHHHHHH------HTEEEEEHHHHHHHC---SCCTTSEEEEECSSCCCC
T ss_pred CeEEEEEEEcCCCeEECCCC-CCCChHHHHHHHHHHHh------CCEEEEChHHhhcCC---CCCCCCeEEEECCCCCcc
Confidence 57999999999999998666 99999999999999953 799999999999985 7999999999999875 2
Q ss_pred CCCCCCCEEEEC-CHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc-ccCccCCCCCC-CCc
Q 009747 101 DIATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDS-SVF 177 (527)
Q Consensus 101 ~~~~~~~~~v~~-sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~-~gd~fFP~~~~-~~f 177 (527)
..+++.++. |++++++.|++. +.++|||+||+++|++||++++|||+++|++|..+ +|+++||.++. ..|
T Consensus 71 ---~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~lG~g~~~f~~~~~~~~l 143 (168)
T 1cz3_A 71 ---NNPSLVFFNGSPADVVKFLEGK----GYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPL 143 (168)
T ss_dssp ---SCTTEEEECSCHHHHHHHHHHT----TCSEEEEEECHHHHHHHHHTTCCSEEEEEECSEEESSCEESSCCCSCEEEE
T ss_pred ---CCCCEEEEeCCHHHHHHHHHhC----CCCEEEEECCHHHHHHHHhCCCCCEEEEEEeceecCCCCcCCCCCCccccc
Confidence 234676666 999999999876 36899999999999999999999999999999988 68999998764 368
Q ss_pred eEeeeecCcccCCccEEEEEEEEccc
Q 009747 178 QPWYSSFPIVENNIRYCLSTYVRVRS 203 (527)
Q Consensus 178 ~l~~~~~~~~e~~~~~~f~~Y~r~~~ 203 (527)
++++... ..+ +++.+..|++.++
T Consensus 144 ~l~~~~~--~~~-~~~~~l~Y~~~~~ 166 (168)
T 1cz3_A 144 KLLEMRR--LNE-RGTLFLKYSVEKS 166 (168)
T ss_dssp EEEEEEE--CSS-SCCEEEEEEEC--
T ss_pred EEeeeEE--eCC-CCEEEEEEEEccc
Confidence 8876543 222 2469999998643
No 40
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.96 E-value=1e-28 Score=233.53 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=137.6
Q ss_pred CceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHHHhhccCCCCCCcEEEEccccccccC----CCCCCCCCCc
Q 009747 21 KRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHRPLPGRL 90 (527)
Q Consensus 21 mrki~livAvs~dG~IG-~~g~lpW~~p~-----D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp----~~~~pl~~R~ 90 (527)
|||+++++|+|+||+|| .+|++||+.++ +.++|.+++.. .++|||||+||++++ ...||+++++
T Consensus 3 M~kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~~~~~p~~~~~~~p~~~~~ 76 (178)
T 3jtw_A 3 ARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSK------IDTVIMGRTTYEQVTQKLSPEKYVYADRQ 76 (178)
T ss_dssp CCCEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHH------EEEEEEEHHHHHHHHHHTCSSSCTTTTSE
T ss_pred ceEEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhc------CCEEEEChHHHhhhhhccCCCCCCCCCCC
Confidence 99999999999999999 59999998664 57899988853 799999999999985 1347999999
Q ss_pred EEEEcCCCCCCCCCCCCEEEEC-CHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc-ccCcc
Q 009747 91 NVVLTRSGSFDIATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTF 168 (527)
Q Consensus 91 niVlSrt~~~~~~~~~~~~v~~-sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~-~gd~f 168 (527)
+||+||+... ..+++.++. |++++++.|++. +.++|||+||+++|++||++++|||+++|++|..+ +|+++
T Consensus 77 ~iV~s~~~~~---~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~~G~g~~~ 149 (178)
T 3jtw_A 77 TYIVTSHLGE---DTDKIKYWKQSPVELVKRIQKE----KGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRL 149 (178)
T ss_dssp EEEECSSCCC---CCSSEEEECSCHHHHHHHHHTS----SCCEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCCSSEES
T ss_pred EEEEeCCCCC---CCCCEEEEcCCHHHHHHHHHhC----CCCEEEEEChHHHHHHHHHCCCceEEEEEEecEEEcCCCcc
Confidence 9999998754 345676655 999999999876 47899999999999999999999999999999999 89999
Q ss_pred CCCCCC-CCceEeeeecCcccCCccEEEEEEEE
Q 009747 169 IPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVR 200 (527)
Q Consensus 169 FP~~~~-~~f~l~~~~~~~~e~~~~~~f~~Y~r 200 (527)
||.++. ..|++++... . + +..+..|.|
T Consensus 150 f~~~~~~~~l~l~~~~~--~-~--~~v~l~Y~r 177 (178)
T 3jtw_A 150 FDRLEEQVPVRLIDVYQ--K-N--ELVYSIYQR 177 (178)
T ss_dssp SSCCCSCCCEEEEEEEE--E-T--TEEEEEEEE
T ss_pred cCCCCcCcceEEeEEEE--E-C--CEEEEEEEe
Confidence 998754 5798886643 2 2 467888876
No 41
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94 E-value=4.3e-26 Score=219.32 Aligned_cols=165 Identities=21% Similarity=0.247 Sum_probs=131.6
Q ss_pred CCceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHH-HhhccCCCCCCcEEEEccccccccCCC--CCCCCCCc
Q 009747 20 PKRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKE-ITQITSDAGKRNAVIMGRKTWESIPLE--HRPLPGRL 90 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG-~~g~lpW~~p~-----D~~~F~~-~T~~~~~p~~~~~vIMGRkTyeslp~~--~~pl~~R~ 90 (527)
.||++++++|+|+||+|| .+|++||+.++ |..+|.+ .+. .++|||||+|||+++.. .||+ +++
T Consensus 18 ~~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~-------~~ailmGr~T~e~~~~~~~~~P~-~~~ 89 (197)
T 3ky8_A 18 QGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMER-------VDGLVMGRNTLDMVLSFDCDWPY-SKP 89 (197)
T ss_dssp TTCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHH-------CSEEEEEHHHHHHHCCTTCCCCC-SSC
T ss_pred CCCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHh-------CCEEEEcHHHhHhHhhcCCCCCC-CCc
Confidence 389999999999999998 59999998654 3344555 454 89999999999998742 3787 468
Q ss_pred EEEEcCCCCCCCCCC-CCEEE-ECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc-ccCc
Q 009747 91 NVVLTRSGSFDIATV-ENVVI-CGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDT 167 (527)
Q Consensus 91 niVlSrt~~~~~~~~-~~~~v-~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~-~gd~ 167 (527)
+||+||++....... +++.+ ..|++++++.|++. +.++|||+||+++ ++||++++|||+++|++|..+ +|++
T Consensus 90 ~iVls~~~~~~~~~~~~~~~~v~~~l~~~l~~L~~~----~~~~i~v~GG~~l-~~~l~~glvDel~l~~~P~~lG~G~~ 164 (197)
T 3ky8_A 90 VFVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAK----GFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGVP 164 (197)
T ss_dssp EEEECSSCCSCCTTCTTTEEEECSCHHHHHHHHHHT----TCCEEEEESHHHH-HHHHHTTCCCEEEEEEESEECSSSEE
T ss_pred EEEEeCCCCCCccccCCCEEEEeCCHHHHHHHHHhC----CCCeEEEEehHHH-HHHHhCCCCCEEEEEEeeEEECCCCc
Confidence 999999975311111 36655 47999999999876 4689999999999 999999999999999999998 7999
Q ss_pred cCCCCCC-CCceEeeeecCcccCCccEEEEEEEEc
Q 009747 168 FIPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 168 fFP~~~~-~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
+||.++. ..|++++.+. ..+ ++.+..|.++
T Consensus 165 ~f~~~~~~~~l~l~~~~~--~~~--g~v~l~Y~~~ 195 (197)
T 3ky8_A 165 LFGELESSLSFNVIKSEV--VLD--SLTQTTYHRK 195 (197)
T ss_dssp SCCCCSSCEEEEEEEEEE--ETT--TEEEEEEEEC
T ss_pred ccCCCCcCcceEEEEEEE--eCC--CEEEEEEEEc
Confidence 9998763 4788876543 333 5689999885
No 42
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.93 E-value=4.4e-26 Score=214.94 Aligned_cols=163 Identities=16% Similarity=0.168 Sum_probs=131.1
Q ss_pred CCceEEEEEEEeCCCeee-cCCCCCCCChh---h--HHHHHHHhhccCCCCCCcEEEEccccccccCC-CCCCCCCCcEE
Q 009747 20 PKRSYQVVVAATRDMGIG-KDGKLPWKLPS---D--LKFFKEITQITSDAGKRNAVIMGRKTWESIPL-EHRPLPGRLNV 92 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG-~~g~lpW~~p~---D--~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~-~~~pl~~R~ni 92 (527)
.|+++++++|+|+||+|| .+|++||+.++ + +++|++++.. .++|||||+||+++.. ..||+ ++++|
T Consensus 2 ~mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~dailmGr~T~~~~~~~~~~P~-~~~~i 74 (178)
T 2xw7_A 2 HMVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIET------IGVLVMGASTYEWVVEHGDWSY-DQPAW 74 (178)
T ss_dssp CSCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHT------EEEEEEEHHHHHHHHHSSCCCC-SSCEE
T ss_pred CCcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHh------CCEEEECHHHHhhhhcCCCCCC-CCCEE
Confidence 388999999999999996 69999998552 3 6789988752 7999999999999852 12555 88999
Q ss_pred EEcCCC-CCCCCCCCCEEEE-CCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc-ccCccC
Q 009747 93 VLTRSG-SFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFI 169 (527)
Q Consensus 93 VlSrt~-~~~~~~~~~~~v~-~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~-~gd~fF 169 (527)
|+||+. +. ...+++.++ .|++++++.|++.+ +.++|||+||+++|++||++++|||+++|++|..+ +|+++|
T Consensus 75 V~s~~~~~~--~~~~~~~~~~~dl~~~l~~L~~~~---~~~~v~v~GG~~l~~~~l~~gLvDel~l~~~P~~lG~g~~~f 149 (178)
T 2xw7_A 75 VLTHRPEIA--AESHPMQVFSGDVAELHPELVAAA---GGKDVWVVGGGDVAAQFVAADLIDEIIVSYAPCTLGVGSRVL 149 (178)
T ss_dssp EECSCGGGC--BTTBCCEEECSCHHHHHHHHHHHT---TTSEEEEEECHHHHHHHHHTTCCCEEEEEEESEECSSSSBSS
T ss_pred EEeCCCCCc--CCCCCEEEECCCHHHHHHHHHhcc---CCCcEEEEccHHHHHHHHHCCCCeEEEEEEeceEecCCCcCC
Confidence 999983 21 123456555 79999999998752 23899999999999999999999999999999998 799999
Q ss_pred CCCCCCCceEeeeecCcccCCccEEEEEEEEc
Q 009747 170 PSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 170 P~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
|..+ .|++++... . + ++.+..|.++
T Consensus 150 ~~~~--~l~l~~~~~--~-~--~~v~l~y~~~ 174 (178)
T 2xw7_A 150 PMRS--EWVLDDCAR--N-G--DFVCARWKRP 174 (178)
T ss_dssp CSCE--ECEEEEEEE--E-T--TEEEEEEECC
T ss_pred CCCC--ceEEEeEEE--e-C--CeEEEEEEEc
Confidence 9876 688876543 2 3 4688899875
No 43
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=8.2e-25 Score=207.99 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=130.7
Q ss_pred CCCCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCCCCC----------C
Q 009747 18 PNPKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP----------L 86 (527)
Q Consensus 18 ~~~mrki~livAvs~dG~IG~-~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~~~p----------l 86 (527)
...|+++++++|+|+||+||. +|+++|++++|..+|.+++.. .++|||||+||++++. .|| +
T Consensus 5 ~~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~------~dail~Gr~T~~~~~~-~~p~~~Pd~~~~~~ 77 (189)
T 2gd9_A 5 NLKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQ------IDTILYGRKSFDLWGQ-YIPKNEDPDTEKEL 77 (189)
T ss_dssp CCCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHT------EEEEEEEHHHHHHHTT-C----------CCH
T ss_pred CCCCceEEEEEEEccccceECCCCCcCcccCChHHHHHHHHhc------CCEEEEChHHHhhhhh-cCCCCCCccccchh
Confidence 455889999999999999986 899999877665578887642 8999999999999963 244 2
Q ss_pred C----CCcEEEEcCCCCCCCCCCCCEEEE-CCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECc
Q 009747 87 P----GRLNVVLTRSGSFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIET 161 (527)
Q Consensus 87 ~----~R~niVlSrt~~~~~~~~~~~~v~-~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~ 161 (527)
+ ++++||+|++... ..+ ++.++ .|++++++.|++. ++++|||+||++++++||++++|||++++++|.
T Consensus 78 ~~~~~~~~~iV~t~~~~~--~~~-~~~~~~~~l~~~l~~L~~~----~~~~i~v~GG~~l~~~~l~~glvDel~l~~~P~ 150 (189)
T 2gd9_A 78 WKLVHSKKKYVFSRTQNE--IDN-QAIFINDNILEEVNKLKKN----PGKDIWLYGGASLITTFINLGLVDEFRLSIHPV 150 (189)
T ss_dssp HHHHHHSEEEEECCEEET--TTT-EEECCHHHHHHHHHHHHHS----CCSEEEEEECHHHHHHHHHTTCCCEEEEEECSE
T ss_pred HHHhCCCCEEEEeCCCCC--CCC-CeEEEcCCHHHHHHHHHhC----CCCeEEEEChHHHHHHHHHCCCceEEEEEEeCE
Confidence 2 7899999998532 122 55554 4899999999876 368999999999999999999999999999999
Q ss_pred cc-ccCccCCCCC-CCCceEeeeecCcccCCccEEEEEEEEc
Q 009747 162 RI-ECDTFIPSID-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 162 ~~-~gd~fFP~~~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
.+ +|+++||.++ ...|++++... ..+ ++.+..|.++
T Consensus 151 ~lG~g~~~f~~~~~~~~l~l~~~~~--~~~--~~~~l~y~~~ 188 (189)
T 2gd9_A 151 VLGEGKPLFIDVKQRINLKMVNTRT--FSS--GVVQIVYHWN 188 (189)
T ss_dssp ECSSSEESSCSCCSCEECEEEEEEE--CTT--SCEEEEEEC-
T ss_pred EeCCCCccCCCCCCCcceEEEEEEE--cCC--CEEEEEEEeC
Confidence 98 6999999864 34788876543 334 3477788753
No 44
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.88 E-value=1.1e-22 Score=199.68 Aligned_cols=170 Identities=17% Similarity=0.184 Sum_probs=119.3
Q ss_pred CceEEEEEEEeCCCeeec---CCCCC-------CCChh-hH-H------HHHHHhhc---cCC----------CCCCcEE
Q 009747 21 KRSYQVVVAATRDMGIGK---DGKLP-------WKLPS-DL-K------FFKEITQI---TSD----------AGKRNAV 69 (527)
Q Consensus 21 mrki~livAvs~dG~IG~---~g~lp-------W~~p~-D~-~------~F~~~T~~---~~~----------p~~~~~v 69 (527)
|+|+++.+++|+||+|+. ++.+- |..+. ++ . +|.+.... -+. -...+++
T Consensus 20 m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~i~~v 99 (231)
T 3kgy_A 20 MSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFERTGAH 99 (231)
T ss_dssp SCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHHTEEEE
T ss_pred cceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHHhcCCEE
Confidence 899999999999999964 22222 43222 21 1 23222100 000 0126899
Q ss_pred EEccccccccCCC---CCCCCCCcEEEEcCCCCCCCCCC-CCE---EEECCHHHHHHHHhcCCCCCCCCcEEEEeCHHHH
Q 009747 70 IMGRKTWESIPLE---HRPLPGRLNVVLTRSGSFDIATV-ENV---VICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142 (527)
Q Consensus 70 IMGRkTyeslp~~---~~pl~~R~niVlSrt~~~~~~~~-~~~---~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy 142 (527)
||||||||+++.. .+|+ +|++||+||++.... .. +++ ++.+|++++++.|++. .+.++|||+||+++|
T Consensus 100 IMGRkTye~~~~~wp~~~p~-~r~~iVlS~~~~~~~-~~~~~~~v~~v~~~l~eal~~l~~~---~~~~~I~V~GG~~l~ 174 (231)
T 3kgy_A 100 IMGKRMFEGGERGWPEEAPF-HTPVYVLTHERRNPW-VRPGGTTFYFVNDGPEQALALAREA---AGERDIRISGGANVI 174 (231)
T ss_dssp EEEHHHHHHHHHHSCSSCSC-CSEEEEECSSCCCCE-EETTTEEEEEECSCHHHHHHHHHHH---HTTSEEEEEECHHHH
T ss_pred EEChhhhhhhhhhcCCcCcC-CCcEEEEcCCCCCcc-ccCCCcEEEEEcCCHHHHHHHHHhh---cCCCcEEEeCCHHHH
Confidence 9999999998621 1244 899999999974311 12 233 3557999999999752 036899999999999
Q ss_pred HHHhcCCCcCEEEEEEECccc-ccCccCCCCCC--CCceEeeeecCcccCCccEEEEEEEE
Q 009747 143 SEALNAPECDAIHITEIETRI-ECDTFIPSIDS--SVFQPWYSSFPIVENNIRYCLSTYVR 200 (527)
Q Consensus 143 ~~~L~~~lvDel~lT~I~~~~-~gd~fFP~~~~--~~f~l~~~~~~~~e~~~~~~f~~Y~r 200 (527)
++||++++|||++||++|..+ +|+++||.++. ..|++.+. ...+| ++++.|.|
T Consensus 175 ~~~L~~gLvDel~lti~Pv~lG~G~~lF~~~~~~~~~l~l~~~---~~~~G--vv~l~Y~r 230 (231)
T 3kgy_A 175 QQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRIDRV---LASPT--ATHLRYVR 230 (231)
T ss_dssp HHHHHTTCCSEEEEEEESCCCSSSEESSCSCCSSCCCEEEEEE---EECSS--CEEEEEEE
T ss_pred HHHHhCCCCCEEEEEEeceeccCCCccCCCCCCccceeEEEEE---EcCCC--EEEEEEEe
Confidence 999999999999999999998 79999999874 35776532 23454 58889987
No 45
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.68 E-value=2.2e-16 Score=165.54 Aligned_cols=167 Identities=17% Similarity=0.134 Sum_probs=122.4
Q ss_pred CCceEEEEEEEeCCCeee-cCCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCC---CC------C---
Q 009747 20 PKRSYQVVVAATRDMGIG-KDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE---HR------P--- 85 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG-~~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~---~~------p--- 85 (527)
.|+++++.+|+|+||+|+ .+|+.+|. -+++.++|.++... .++|||||+||+...+. .| |
T Consensus 156 ~rP~V~lk~A~SLDG~Ia~~~G~~~Wit~~~~~~~~~~lr~~------~daILvGr~T~~~d~P~Lt~R~~~g~~~P~rv 229 (373)
T 2b3z_A 156 GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKT------HQSILVGVGTVKADNPSLTCRLPNVTKQPVRV 229 (373)
T ss_dssp SSCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHH------SSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEE
T ss_pred cchhheeeeeecCCCceeccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhhhhcCCcccccCcCCCCCCeEE
Confidence 478999999999999998 58999997 47778888887643 79999999999985210 01 1
Q ss_pred -------CC---------CCcEEEEcCCCCCCC----CCCCCEEEE------CCHHHHHHHHhcCCCCCCCCcEEEEeCH
Q 009747 86 -------LP---------GRLNVVLTRSGSFDI----ATVENVVIC------GSIGSALELLAASPYCLSIEKVFVIGGG 139 (527)
Q Consensus 86 -------l~---------~R~niVlSrt~~~~~----~~~~~~~v~------~sl~eai~~l~~~~~~~~~~~I~ViGGa 139 (527)
+| ++++||+|++..... ..+.++.+. .|+.++++.|++. +.++|||.||+
T Consensus 230 Vld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 305 (373)
T 2b3z_A 230 ILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEE----GIMSVYVEGGS 305 (373)
T ss_dssp EECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHT----TCCEEEEEECH
T ss_pred EEcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHC----CCCEEEEEEhH
Confidence 11 577888887752100 012344443 5899999999886 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECcccc---cCccCCCC------CCCCceEeeeecCcccCCccEEEEEEEEc
Q 009747 140 QILSEALNAPECDAIHITEIETRIE---CDTFIPSI------DSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 140 ~Iy~~~L~~~lvDel~lT~I~~~~~---gd~fFP~~------~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
+++.+||++++|||++++++|..+. |.++|+.. +...|++++... ..++ ....|.+.
T Consensus 306 ~l~~s~L~agLVDEl~l~iaP~llG~~~g~~lf~~~~~~~~~~~~~l~l~~~~~--~g~d---v~l~y~~~ 371 (373)
T 2b3z_A 306 AVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQ--IGRD---IKLTAKPT 371 (373)
T ss_dssp HHHHHHHHHTCCSEEEEEEESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEE--ETTE---EEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEEEcceEecCCCCcCcccccccccccccccceEeEEEE--ECCc---EEEEEEEC
Confidence 9999999999999999999999883 67788753 123577665442 3332 35667654
No 46
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=99.64 E-value=7e-15 Score=142.72 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=116.2
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccC----C-----CCCCCC-
Q 009747 20 PKRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----L-----EHRPLP- 87 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp----~-----~~~pl~- 87 (527)
.++++++.+|+|+||+|+. +|.. |. -+++..++.++... .++|||||+||+... . ..+|+.
T Consensus 2 ~rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~------~dailvG~~T~~~d~p~L~~~r~~~~~~P~~v 74 (219)
T 2azn_A 2 KKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRAN------VDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRI 74 (219)
T ss_dssp CCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHT------SSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEE
T ss_pred CCCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHH------CCEEEEChhehhhcCCcCccccccCCCCCEEE
Confidence 3688999999999999975 7877 96 45556667766542 789999999999651 1 123431
Q ss_pred -----------------CCcEEEEcCCCCCCCC----C---CCCEEEE------CCHHHHHHHHhcCCCCCCCCcEEEEe
Q 009747 88 -----------------GRLNVVLTRSGSFDIA----T---VENVVIC------GSIGSALELLAASPYCLSIEKVFVIG 137 (527)
Q Consensus 88 -----------------~R~niVlSrt~~~~~~----~---~~~~~v~------~sl~eai~~l~~~~~~~~~~~I~ViG 137 (527)
..+.+|+|++...... . ..++.+. .++.++++.|++. +.++|+|.|
T Consensus 75 V~d~~~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~ilveG 150 (219)
T 2azn_A 75 VVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDK----GIKSILLEG 150 (219)
T ss_dssp EECTTCCCCTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHT----TCCEEEEEE
T ss_pred EECCCCCCCccchhhcCCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHc----CCCEEEEee
Confidence 2455666655421000 0 1134332 4899999999886 478999999
Q ss_pred CHHHHHHHhcCCCcCEEEEEEECcccc---cCccCCCCC------CCCceEeeeecCcccCCccEEEEEEEEc
Q 009747 138 GGQILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 138 Ga~Iy~~~L~~~lvDel~lT~I~~~~~---gd~fFP~~~------~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
|+++..+||++++|||+++++.|..+. |-++|+... ...|++++... .+++ .+..|.++
T Consensus 151 G~~l~~s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~~--~~~~---v~l~y~~~ 218 (219)
T 2azn_A 151 GGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYR--LGEG---IVLEFKVK 218 (219)
T ss_dssp CHHHHHHHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEE--ETTE---EEEEEEEC
T ss_pred CHHHHHHHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEEE--ECCe---EEEEEEEC
Confidence 999999999999999999999999884 457887542 23677765542 2332 45778764
No 47
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.45 E-value=1.3e-12 Score=138.19 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=109.0
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccC----CCCC---------
Q 009747 20 PKRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHR--------- 84 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp----~~~~--------- 84 (527)
.|+.+++.+|+|+||+|+. +|+..|. -+++..++.++... .++|||||+||+..- .+.|
T Consensus 172 ~rP~V~~k~A~SLDG~IA~~~G~s~Wit~~~~r~~~~~lra~------~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~~ 245 (402)
T 2g6v_A 172 GFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ------SHAILTSSATVLADDPALTVRWSELDEQTQAL 245 (402)
T ss_dssp SSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHH------CSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSS
T ss_pred ccchheeeeeecCCCCCccCCCCcCCcCCHHHHHHHHHHHHh------CCEEEECHHHHhhcCccccccccccccccccc
Confidence 4789999999999999975 8889997 35555666655543 789999999999641 1112
Q ss_pred --------CC-----------------C-CCcEEEEcCCCCCCCCCCCCEEEE--C------CHHHHHHHHhcCCCCCCC
Q 009747 85 --------PL-----------------P-GRLNVVLTRSGSFDIATVENVVIC--G------SIGSALELLAASPYCLSI 130 (527)
Q Consensus 85 --------pl-----------------~-~R~niVlSrt~~~~~~~~~~~~v~--~------sl~eai~~l~~~~~~~~~ 130 (527)
|+ . ..+.+|+|++..... -..++.+. + ++.++++.|++. +.
T Consensus 246 ~~~~~~~~P~rvVld~~~~lp~~a~~~~~~~~~iV~t~~~~~~~-l~~gv~vi~~~~~~g~vdl~~~l~~L~~~----g~ 320 (402)
T 2g6v_A 246 YPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSRE-WPETVRTLLIPEHKGHLDLVVLMMQLGKQ----QI 320 (402)
T ss_dssp CCGGGCCCCEEEEECTTCCCCTTSGGGSSSSCEEEEESSCCCSC-CCTTEEEEECCEETTEECHHHHHHHHHHT----TC
T ss_pred ccccccCCCeEEEECCCCCCChhhHhhcCCCCEEEEECCcchhh-hcCCCEEEEecCCCCCCCHHHHHHHHHhC----CC
Confidence 11 0 346677776542100 12244333 3 899999999886 47
Q ss_pred CcEEEEeCHHHHHHHhcCCCcCEEEEEEECccc-c-cCccCCCC-----C-CCCceEeeee
Q 009747 131 EKVFVIGGGQILSEALNAPECDAIHITEIETRI-E-CDTFIPSI-----D-SSVFQPWYSS 183 (527)
Q Consensus 131 ~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~-~-gd~fFP~~-----~-~~~f~l~~~~ 183 (527)
++|+|.||+++..+||++++|||+++++.|..+ . |-++|+.. + ...|++++..
T Consensus 321 ~~vlVEGG~~L~~sfL~agLVDEl~l~iaP~llG~~G~~lf~~~~~~~l~~~~~L~l~~~~ 381 (402)
T 2g6v_A 321 NSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIR 381 (402)
T ss_dssp CEEEECCCHHHHHHHHHHTCCCEEEEEECSCCCSSSSCBSCCCCC-------CCCEEEEEE
T ss_pred CEEEEEEhHHHHHHHHHCCCccEEEEEEccEEeCCCCcCCCCCccccccccccccEEeEEE
Confidence 899999999999999999999999999999988 3 67888763 1 2367776554
No 48
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.44 E-value=4.1e-12 Score=132.52 Aligned_cols=165 Identities=20% Similarity=0.205 Sum_probs=114.6
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCC---CCCCCCC-cEEEE
Q 009747 20 PKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE---HRPLPGR-LNVVL 94 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~---~~pl~~R-~niVl 94 (527)
.++.+++.+|+|+||+|+. +|+..|.-+++.+++.++... .++|||||+||+...+. .++.... ..||+
T Consensus 158 ~rP~V~lk~A~SLDG~IA~~~G~s~Wit~~~~~~~~~lr~~------~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rvVl 231 (360)
T 2hxv_A 158 KRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNI------YSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVIL 231 (360)
T ss_dssp SSCEEEEEEEEETTSEEECTTSCCTTSCSTTHHHHHHHHHH------SSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEEE
T ss_pred chhhheeehhhccCCcccCCCCCcccCCHHHHHHHHHHHHH------CCEEEECccchhhhCCcccccCCCCCCCeEEEE
Confidence 4778999999999999975 888899654445666665542 78999999999864210 1222233 35999
Q ss_pred cCCCCCCCC-----CC-CCEEE-E-----------------CCHHHHHHHHhcCCCCCCCCcEEEEeCHHHHHHHhcCCC
Q 009747 95 TRSGSFDIA-----TV-ENVVI-C-----------------GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPE 150 (527)
Q Consensus 95 Srt~~~~~~-----~~-~~~~v-~-----------------~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~l 150 (527)
|++...... .. ...++ . .|+.++++.|++. ++++|+|.||+++..+||+++
T Consensus 232 d~~~~~p~~~~~~~~~~~~~iv~t~~~~~~~~~~v~v~~~~~dl~~~l~~L~~~----g~~~vlVeGG~~L~~sfL~ag- 306 (360)
T 2hxv_A 232 DRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYER----DIDSVLVEGGSKVFSEFLDHA- 306 (360)
T ss_dssp CTTCTTTTCCCGGGSSSSCEEEEESCSSCCCCTTSEEEECCCCHHHHHHHHHHT----TCCEEEECCCHHHHHHHGGGC-
T ss_pred CCCCCCChhHhHHhcCCCcEEEEECCCchhhccCcEEEcCCCCHHHHHHHHHhC----CCCEEEEEecHHHHHHHHHCC-
Confidence 987542111 00 12222 2 3899999999886 478999999999999999999
Q ss_pred cCEEEEEEECccc-ccCccCCC----CC-CCCceEeeeecCcccCCccEEEEEEEEc
Q 009747 151 CDAIHITEIETRI-ECDTFIPS----ID-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 151 vDel~lT~I~~~~-~gd~fFP~----~~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
||+++++.|..+ +|-++|.. +. ...|++++... .+++ ....|.++
T Consensus 307 -DEl~l~iaP~llG~G~~lf~~~~~~~~~~~~L~l~~~~~--~g~d---v~l~y~~~ 357 (360)
T 2hxv_A 307 -DVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEF--SDSE---FLVEMRPC 357 (360)
T ss_dssp -SEEEEEEESCCCSSSEETTTTCCCCTTSCCCEEEEEEEE--ETTE---EEEEEEEC
T ss_pred -CEEEEEEcceEEcCCCcccccccccccccccceEeEEEE--ECCc---EEEEEEeC
Confidence 999999999988 45577743 22 23577765542 2332 45677654
No 49
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=99.37 E-value=2.5e-11 Score=121.67 Aligned_cols=169 Identities=15% Similarity=0.142 Sum_probs=114.2
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhccCCCCCCcEEEEccccccccCCC--C----CC------
Q 009747 20 PKRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE--H----RP------ 85 (527)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~-~p~D~~~F~~~T~~~~~p~~~~~vIMGRkTyeslp~~--~----~p------ 85 (527)
.++++++.+|+|+||+ +. +|...|. -+++..++.++-.. .++|||||+||+.--.. . +|
T Consensus 32 ~rP~V~lk~a~SLDG~-a~~~g~s~wit~~~~~~~~~~lr~~------~DaIlvG~~T~~~d~p~l~~~~~r~~~~r~~~ 104 (270)
T 2p4g_A 32 NEPECRAIAITSINGS-ATLSGVSGPMGDQTDADLLIQLRGW------ADAIVVGAETARKENYGPVVLPHGIKNQRQKL 104 (270)
T ss_dssp HCCEEEEEEEEETTSB-SCBTTBSGGGCCHHHHHHHHHHHHH------CSEEEEEHHHHHHTTCCSCCCCHHHHHHHHHT
T ss_pred CCCEEEEEEEECCCCC-cCCCCCccCcCCHHHHHHHHHHHHH------CCEEEEChHHhhhhCCcccccccccccccccc
Confidence 3689999999999999 65 8888896 35556666665542 78999999999843110 0 00
Q ss_pred -C-CCCcEEEEcCCCCCCCC---------C--------------------------CCCE--EEE----CCHHHHHHHHh
Q 009747 86 -L-PGRLNVVLTRSGSFDIA---------T--------------------------VENV--VIC----GSIGSALELLA 122 (527)
Q Consensus 86 -l-~~R~niVlSrt~~~~~~---------~--------------------------~~~~--~v~----~sl~eai~~l~ 122 (527)
. +....||++++...... . ..++ +++ .++.++++.|+
T Consensus 105 g~~~~p~~vV~d~~~~~p~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~ 184 (270)
T 2p4g_A 105 GRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALH 184 (270)
T ss_dssp TCCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred CCCCCCcEEEECCCCCCCccchhhcCCCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHH
Confidence 0 11234555554321000 0 0012 222 26889999998
Q ss_pred cCCCCCCCCcEEEEeCHHHHHHHhcCCCcCEEEEEEECcccc--cCccCCC--C-CCCCceEeeeecCccc-CCccEEEE
Q 009747 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIE--CDTFIPS--I-DSSVFQPWYSSFPIVE-NNIRYCLS 196 (527)
Q Consensus 123 ~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~lT~I~~~~~--gd~fFP~--~-~~~~f~l~~~~~~~~e-~~~~~~f~ 196 (527)
+. +.++|+|.||+++..+||++++|||+++++.|..+. |-++|+. . ....|++++... .. + +..+.
T Consensus 185 ~~----g~~~vlvEGG~~l~~sfL~agLVDEl~l~iaP~llG~~g~~~f~~~~~~~~~~l~l~~~~~--~~~~--g~v~l 256 (270)
T 2p4g_A 185 AR----RLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLS--SSPN--GLIFS 256 (270)
T ss_dssp TT----TCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEEE--ECTT--CCEEE
T ss_pred HC----CCCEEEEecCHHHHHHHHHCCCCeEEEEEEcCEEEcCCCcCcccCcCcCcCcceEEEEEEE--eccC--CEEEE
Confidence 76 478999999999999999999999999999999883 6778866 2 234788876532 12 3 35888
Q ss_pred EEEEccc
Q 009747 197 TYVRVRS 203 (527)
Q Consensus 197 ~Y~r~~~ 203 (527)
.|.+.+.
T Consensus 257 ~Y~~~~~ 263 (270)
T 2p4g_A 257 RYKVIRD 263 (270)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9988643
No 50
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=22.09 E-value=76 Score=24.84 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeC
Q 009747 451 IAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKIN 496 (527)
Q Consensus 451 iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~ 496 (527)
-|...|+++|..+..++...|-.-..+++..+|++.+...-.+.+.
T Consensus 41 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r 86 (95)
T 3r68_A 41 PAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLD 86 (95)
T ss_dssp HHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEC
Confidence 3778899999999999999998766677888888754433334443
No 51
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=22.00 E-value=1.1e+02 Score=23.62 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=34.5
Q ss_pred HHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCC
Q 009747 452 AHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINP 497 (527)
Q Consensus 452 A~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~p~l~~~~ 497 (527)
|...|+++|..+..++..-+-.-..+.+.++++..+...-.+.+..
T Consensus 40 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r 85 (91)
T 1g9o_A 40 AEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcC
Confidence 7889999999999999999877656667777877654444444443
Done!