RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009747
(527 letters)
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 345 bits (886), Expect = e-116
Identities = 167/309 (54%), Positives = 217/309 (70%)
Query: 218 DSKTNSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQM 277
+ N + F + ++ H EY YL ++ DI+ +GN + DRTG G LSKFG M
Sbjct: 17 KEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIM 76
Query: 278 RYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGL 337
+++L FPLLTTKK+F RG++EELLWFI G TN L K++ IW+ N +RE+LD+ L
Sbjct: 77 KFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKL 136
Query: 338 TDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWN 397
RE DLGP+YGFQWRHFGA YTNM+ +Y +G DQL ++IN IKN+P RRI+L AWN
Sbjct: 137 FHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWN 196
Query: 398 PSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDL 457
DL MALPPCH+ QFY+ +G+LSC MYQRS D+GLGVPFNIASY++ T MIA VC+L
Sbjct: 197 VKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNL 256
Query: 458 APGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDP 517
P FIHV+G+AHVY NH+ L+ QL ++P PFP LK+NP+ K+I+ F DF + Y
Sbjct: 257 QPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVH 316
Query: 518 HQKIEMKMA 526
H+KI M MA
Sbjct: 317 HEKISMDMA 325
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 342 bits (877), Expect = e-116
Identities = 156/288 (54%), Positives = 204/288 (70%), Gaps = 1/288 (0%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300
+H E+ YL L+ ++ +G +++RTG T S FG MR+++R +FPLLTTKKV R + E
Sbjct: 2 EHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFE 61
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARY 360
EL+WFI G TN L EK ++IW GN S+EYL+ +GL REE DLGP+YGFQWRH+ Y
Sbjct: 62 ELIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEY 121
Query: 361 TNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANG 420
MH DY+G G DQL +I +KNNP DRR +L+AWNPS L MALPPCH+ +Q+Y+ N
Sbjct: 122 KTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTND 181
Query: 421 E-LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479
LSC +YQRS D+GLG PFNIASYA+LT M+A VC PG+ IGDAH+Y NH+ L
Sbjct: 182 NCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQL 241
Query: 480 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+EQL + P+PFP LK + ++I+ F ED +LIGY P+ I+M MAV
Sbjct: 242 KEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 289
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 336 bits (862), Expect = e-113
Identities = 182/294 (61%), Positives = 226/294 (76%), Gaps = 8/294 (2%)
Query: 242 HEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFG-CQMRYNLRT-TFPLLTTKKVFWRGVV 299
EE YL LVQ II+ G + DRTGTGTLS F ++++LR TFPLLTTK+VF RGV+
Sbjct: 2 AEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVI 61
Query: 300 EELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGAR 359
EELLWFI G T++ L+EK+IHIWD N SREYLDS+GLT R+EGDLGP+YGFQWRHFGA
Sbjct: 62 EELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAE 121
Query: 360 YTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFY--- 416
Y + +Y GQG DQL ++I KI+ +P DRR++LSAWNP+DL+ MALPPCHMF QFY
Sbjct: 122 YIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHI 181
Query: 417 ---MANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYR 473
ELSCQ+YQRS DMGLGVPFNIASYALLTCMIAHVCDL PGDFIHV+GD H+Y+
Sbjct: 182 PSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYK 241
Query: 474 NHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
+H+ L++QL + P+PFP L +N DI+ F +DF + Y P++ I+MKM++
Sbjct: 242 DHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 295
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 335 bits (860), Expect = e-113
Identities = 191/287 (66%), Positives = 225/287 (78%)
Query: 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVE 300
H E YL +Q I+ G KDDRTGTGTLS FG Q RY+LR FPLLTTK+VFW+GV+E
Sbjct: 2 PHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLE 61
Query: 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARY 360
ELLWFI GSTNAK L K + IWD N SR++LDS+G + REEGDLGPVYGFQWRHFGA Y
Sbjct: 62 ELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEY 121
Query: 361 TNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANG 420
+M +DYSGQG DQL VI+ IK NP+DRRI++ AWNP DL LMALPPCH QFY+ N
Sbjct: 122 RDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNS 181
Query: 421 ELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480
ELSCQ+YQRS DMGLGVPFNIASYALLT MIAH+ L PGDFIH +GDAH+Y NH+ PL+
Sbjct: 182 ELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLK 241
Query: 481 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
QLQ+ P+PFP L+I + + ID F AEDF++ GY+PH I+M+MAV
Sbjct: 242 IQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 329 bits (844), Expect = e-110
Identities = 137/315 (43%), Positives = 185/315 (58%), Gaps = 32/315 (10%)
Query: 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELL 303
E YL L + ++ +G+ K DRT TGT S FG QMR++L FPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 304 WFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLG----------------- 346
WF+ G TN + L + HIWD A +++ S + D G
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 347 --------------PVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIV 392
YG +G+++ H G DQL DVI +IK +P R ++
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSK-GDTIDQLGDVIEQIKTHPYSRALI 181
Query: 393 LSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIA 452
+SAWNP D+ MALPPCH QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT ++A
Sbjct: 182 VSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVA 241
Query: 453 HVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKL 512
H C L G+FIH GDAH+Y NH+ ++EQL + P+P P L++NP+K DI F +D KL
Sbjct: 242 HECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKL 301
Query: 513 IGYDPHQKIEMKMAV 527
+ YDP+ I+ +AV
Sbjct: 302 LNYDPYPAIKAPVAV 316
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 299 bits (766), Expect = 2e-99
Identities = 136/281 (48%), Positives = 181/281 (64%), Gaps = 20/281 (7%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
YL L+Q ++ +G K+DRTGTGTLS FG QMR+NL+ FPL+TTK+ R ++ ELLWF+
Sbjct: 4 YLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD 366
G TN L E ++ IWD A E GDLGPVYG QWR +
Sbjct: 64 QGDTNIAYLHENNVTIWDEWA------------DENGDLGPVYGKQWRAWPT-------- 103
Query: 367 YSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQM 426
G+ DQ+ V+N++KN+P+ RRI++SAWN +L MAL PCH F QFY+A+G+LSCQ+
Sbjct: 104 PDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQL 163
Query: 427 YQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKL 486
YQRS D+ LG+PFNIASYALL M+A CDL GDF+ GD H+Y NH+ QL +
Sbjct: 164 YQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
Query: 487 PKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
P+P P L I + + I + EDF++ GYDPH I+ +A+
Sbjct: 224 PRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 271 bits (694), Expect = 2e-88
Identities = 126/296 (42%), Positives = 172/296 (58%), Gaps = 28/296 (9%)
Query: 247 YLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFI 306
Y L++DI +G DDRTGTGT++ FG ++R++L FP +TTKK+ W+ + EL+WF+
Sbjct: 4 YQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFL 63
Query: 307 SGSTNAKVLQEKDIHIWDGNAS---REYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNM 363
SGSTN L+ + Y + G+LGP+YG QWR FG
Sbjct: 64 SGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFG------ 117
Query: 364 HADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELS 423
G DQ+++VI++IK PNDRR ++SAWNP++LK MALPPCHMF QF + NG L
Sbjct: 118 -------GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLD 170
Query: 424 CQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483
Q YQRS D+ LG+PFNIASYA L ++A +C+L PGD I G+ H+Y NHV +E L
Sbjct: 171 LQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEIL 230
Query: 484 QKLPKPFPILKIN------------PEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
++ PK L I+ + K + +DF L Y H I+ KMAV
Sbjct: 231 RREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 256 bits (655), Expect = 1e-82
Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 31/297 (10%)
Query: 242 HEEYLYLRLVQDIISDGNLKD----------DRTGTGTLSKFGCQMRYNLRTTFPLLTTK 291
+ Y +++DII++G + D T TLS QMR++ P+LTTK
Sbjct: 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSE-VPILTTK 60
Query: 292 KVFWRGVVEELLWFISGSTN-AKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYG 350
KV W+ ++ELLW +N L +HIWD +
Sbjct: 61 KVAWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDG------------------- 101
Query: 351 FQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCH 410
+G + + +G+ DQ+ +++++KNNP+ RR + WNP +L MAL PC
Sbjct: 102 TIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCV 161
Query: 411 MFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 470
Q+Y+ +G+L ++ RS DM LG PFN+ Y +L MIA V G++I IGD H
Sbjct: 162 YETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCH 221
Query: 471 VYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527
VY H+ L+ Q+++ P L INPE KD F +DFKLI Y K+ ++AV
Sbjct: 222 VYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 214 bits (545), Expect = 6e-67
Identities = 47/273 (17%), Positives = 89/273 (32%), Gaps = 52/273 (19%)
Query: 235 PKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVF 294
M E+ +L L + + + D+TG T+ G + F L + +
Sbjct: 4 DSMTVEEIRLHLGL-----ALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEYI- 57
Query: 295 WRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWR 354
EL W+ S S K + + IW A +G++ YG+
Sbjct: 58 ----QRELEWYKSKSLFVKDIPGETPKIWQQVA------------SSKGEINSNYGWAI- 100
Query: 355 HFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS-----DLKLMALPPC 409
+S + Q + ++ NP+ RR ++ PS + M+ C
Sbjct: 101 ------------WSEDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMC 148
Query: 410 HMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVC-------DLAPGDF 462
Q+ + + +++ + RS D+ G + A + + G
Sbjct: 149 TNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSI 208
Query: 463 IHVIGDAHVYRNHVRPLEEQL-----QKLPKPF 490
I +G HVY H ++ K +
Sbjct: 209 IWNVGSLHVYSRHFYLVDHWWKTGETHISKKDY 241
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 154 bits (391), Expect = 4e-45
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 8/185 (4%)
Query: 22 RSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP 80
S +VA +++MGIGK+G LPW L ++ ++F+ +T +S GK+N VIMG+KTW SIP
Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61
Query: 81 LEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQ 140
++RPL GR+N+VL+R + S+ AL+L ++ V+++GG
Sbjct: 62 EKNRPLKGRINLVLSRELKEPP--QGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 119
Query: 141 ILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ-----PWYSSFPIVENNIRYCL 195
+ EA+N P + +T I E DTF P ID ++ P S E I+Y
Sbjct: 120 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 179
Query: 196 STYVR 200
Y +
Sbjct: 180 EVYEK 184
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 178
Score = 148 bits (373), Expect = 1e-42
Identities = 67/178 (37%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
VV A+ GIG +G+LPW + DLKFF +IT D+ K+NA+IMGRKTW+SI RP
Sbjct: 7 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 64
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
L R+ VV++ S D A VV + + SIE +FV GG I +A
Sbjct: 65 LKNRIIVVISSSLPQDEADPNVVVFRNLE----DSIENLMNDDSIENIFVCGGESIYRDA 120
Query: 146 LNAPECDAIHITEIETR-IECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVR 202
L D I++T + IE DT+ P I + F P Y S NI Y + +
Sbjct: 121 LKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FLPVYMSQTFCTKNISYDFMIFEKQE 177
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
Length = 206
Score = 148 bits (373), Expect = 3e-42
Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 19 NPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEIT---QITSDAGKRNAVIMGRKT 75
N ++S ++VA T GIG+ LPWKL ++ +FK +T N V+MGRKT
Sbjct: 2 NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKT 61
Query: 76 WESIPLEHRPLPGRLNVVLTRSGSFDIAT-VENVVICGSIGSALELLAASPYCLSIEKVF 134
WESIPL+ RPL GR+NVV+TR+ S D+ + + L S + I ++F
Sbjct: 62 WESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIF 121
Query: 135 VIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSID-----------------SSVF 177
VIGG Q+ A++ P+ D I T I I CD F P S
Sbjct: 122 VIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWV 181
Query: 178 QPWYSSFPIVENNIRYCLSTYVR 200
I E+ Y + R
Sbjct: 182 GTKVPHGKINEDGFDYEFEMWTR 204
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 192
Score = 141 bits (356), Expect = 5e-40
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
+V A +GIG GK+PW+L ++++FK++T T+ RNAVIMGRKTWESIP + RP
Sbjct: 9 IVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRP 68
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LP RLN++L+RS +I + ++ +E+VF+IGG +I +E
Sbjct: 69 LPDRLNIILSRSYENEIIDDNIIHASSI-------ESSLNLVSDVERVFIIGGAEIYNEL 121
Query: 146 LNAPECDAIHITEIETR----IECDTFIPSIDSSVFQPWYSSF------------PIVEN 189
+N + ITEIE IE DTF+ + S I E
Sbjct: 122 INNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESWTKQPKSELQKFVGDTVLEDDIKEG 180
Query: 190 NIRYCLSTYVR 200
+ Y + + R
Sbjct: 181 DFTYNYTLWTR 191
>d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 231
Score = 142 bits (358), Expect = 7e-40
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 34/198 (17%)
Query: 35 GIGKDGKLPWK-LPSDLKFFKEITQITSD----------------------------AGK 65
G+G G LPWK + D+K+F+ +T ++
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 66 RNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASP 125
+N V+MGR WESIP + +PL R+NV+L+R+ + E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKED-FDEDVYIINKVEDLIVLL---- 153
Query: 126 YCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFP 185
L+ K F++GG + E L I+ T I + ECD F P I+ + +Q S
Sbjct: 154 GKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDV 213
Query: 186 IVENNIRYCLSTYVRVRS 203
NN Y + +
Sbjct: 214 YTSNNTTLDFIIYKKTNN 231
>d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 159
Score = 133 bits (335), Expect = 2e-37
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A IG+ G +PW+LP D F+EIT + ++MGR+TW+S+P + RPL
Sbjct: 5 IWAQATSGVIGRGGDIPWRLPEDQAHFREIT-------MGHTIVMGRRTWDSLPAKVRPL 57
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
PGR NVVL+R F + GS+ AL + +VIGGGQ+ + AL
Sbjct: 58 PGRRNVVLSRQADFMA---SGAEVVGSLEEALT----------SPETWVIGGGQVYALAL 104
Query: 147 NAPECDAIHITEIET---RIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVR 200
P +TE++ R D P +D + ++ + + +RY L +Y R
Sbjct: 105 --PYATRCEVTEVDIGLPREAGDALAPVLDET-WRGETGEWRFSRSGLRYRLYSYHR 158
>d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Bacteriophage T4 [TaxId: 10665]}
Length = 193
Score = 129 bits (326), Expect = 9e-36
Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 29/179 (16%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V ++ G LPW ++ DL+ FK T + +IMG KT++S+
Sbjct: 13 TVDGFNELAFGLGDGLPWGRVKKDLQNFKART-------EGTIMIMGAKTFQSL---PTL 62
Query: 86 LPGRLNVVLTRS--GSFDIATVENVVICGSIGSALELLAASPYCLSI------------E 131
LPGR ++V+ + + + ++ +S
Sbjct: 63 LPGRSHIVVCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNS 122
Query: 132 KVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENN 190
KV VIGG +L AL P D + ++ I R ++ + S F S +VE +
Sbjct: 123 KVSVIGGPALLYAAL--PYADEVVVSRIVKRHRVNSTVQLDAS--FLDDISKREMVETH 177
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Escherichia coli [TaxId: 562]}
Length = 159
Score = 124 bits (312), Expect = 3e-34
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 26 VVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
++ A D IG + +PW LP+DL +FK T VIMGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------DKPVIMGRHTWESI---GRP 53
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LPGR N++L+ D + A C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIILSSQPGTDDRVTWVK----------SVDEAIAACGDVPEIMVIGGGRVYEQF 103
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIV--ENNIRYCLSTYVR 200
L P+ +++T I+ +E DT P + ++ +S F +N+ YC R
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILER 158
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Haloferax volcanii [TaxId: 2246]}
Length = 157
Score = 116 bits (291), Expect = 3e-31
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 27 VVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP 85
V A + IG+DG+LPW +P+D K ++ + V++GR T+ES+
Sbjct: 5 VAALAENRVIGRDGELPWPSIPADKKQYRSRIA-------DDPVVLGRTTFESM---RDD 54
Query: 86 LPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEA 145
LPG +V++RS + S+ A+++ A+ +VIGG I +
Sbjct: 55 LPGSAQIVMSRSERSFSV--DTAHRAASVEEAVDIAASLDAE----TAYVIGGAAIYALF 108
Query: 146 LNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVR 200
P D + ++ + E DT+ P D++ ++ ++ + L +VR
Sbjct: 109 Q--PHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDAE-----TDHEGFTLQEWVR 156
>d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Lactobacillus casei [TaxId: 1582]}
Length = 162
Score = 114 bits (286), Expect = 2e-30
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
+ A R+ IGKDG LPW LP DL +F+ T +++GR+T+ES P RPL
Sbjct: 4 LWAQNRNGLIGKDGHLPWHLPDDLHYFRAQT-------VGKIMVVGRRTYESFP--KRPL 54
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P R NVVLT + V + + A +++ + GG QI +
Sbjct: 55 PERTNVVLTHQEDYQAQGAVVVHD-------VAAVFAYAKQHLDQELVIAGGAQIFTAFK 107
Query: 147 NAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENN-IRYCLSTYVR 200
+ D + +T + E DT + ++ F S N + + + +
Sbjct: 108 --DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQK 160
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Thermotoga maritima [TaxId: 2336]}
Length = 164
Score = 78.4 bits (192), Expect = 1e-17
Identities = 42/166 (25%), Positives = 57/166 (34%), Gaps = 16/166 (9%)
Query: 27 VVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPL 86
V+A I W D K F++IT V+MGR T+E I RPL
Sbjct: 6 VLAMDVSGKIASSV-ESWSSFEDRKNFRKITTEI------GNVVMGRITFEEIG---RPL 55
Query: 87 PGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146
P RLNVV V GS ++ L Y E+V VIGG + +E L
Sbjct: 56 PERLNVV-LTRRPKTSNNPSLVFFNGSPADVVKFLEGKGY----ERVAVIGGKTVFTEFL 110
Query: 147 NAPECDAIHITEIETRI-ECDTFIPSIDSSVFQPWYSSFPIVENNI 191
D + +T + F + + E
Sbjct: 111 REKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGT 156
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 31.1 bits (70), Expect = 0.30
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 355 HFGARYTNMHADYSGQ----------GFDQLLDVINKIKNNPN------DRRIVLSAWNP 398
+ G +Y N+ + + +++ + +NK+ NP D+ +++AW
Sbjct: 123 YLGVKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQ 182
Query: 399 SDLKLMA 405
+ K MA
Sbjct: 183 VNAKDMA 189
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 101
Score = 29.0 bits (64), Expect = 0.38
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 374 QLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADM 433
+++ V+++ + N +VL + + M LP + L + S D
Sbjct: 5 EMMTVVSQREVAYNIFEMVLKG---TLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDK 61
Query: 434 GLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIG 467
+ T + L G + V+G
Sbjct: 62 RAKTCTILYRIGDETTGTYKLSKLESGAKVDVMG 95
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 29.3 bits (66), Expect = 0.75
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 355 HFGARYTNMHADYSGQ-------GFDQLLDVINKIKNNPN------DRRIVLSAWNPSDL 401
+GA+ + + +GQ ++ L K + + N DR + +A L
Sbjct: 16 KYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKL 75
Query: 402 KLMA 405
++
Sbjct: 76 SDIS 79
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C,
MoaC {Escherichia coli [TaxId: 562]}
Length = 146
Score = 28.7 bits (64), Expect = 0.96
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 66 RNAVIMGRK-TWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVIC-GSIGSALE---- 119
R A I K TW+ IPL H + ++ V L + +E + G G +E
Sbjct: 49 RIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTA 108
Query: 120 ----LLAASPYCLSIEKVFVIGGGQILS 143
L C +++K VIG ++L+
Sbjct: 109 ASVAALTIYDMCKAVQKDMVIGPVRLLA 136
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 29.0 bits (65), Expect = 1.0
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 355 HFGARYTNMHADYSGQ----------GFDQLLDVINKIKNNPN------DRRIVLSAWNP 398
+ G +Y + + + +D + INK+ NP+ D+ +++AW
Sbjct: 27 YLGDKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKA 86
Query: 399 SDLKLMA 405
+ + M
Sbjct: 87 FNAEDMG 93
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 29.1 bits (65), Expect = 1.1
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 441 IASYA--LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPE 498
I + A L C IA +C H+ D VY + E+ L + + + +
Sbjct: 164 IGARAARLSVCGIAAICQKRGYKTGHIAADGSVYNRYPGFKEKAANALKDIYGWTQTSLD 223
Query: 499 KKDIDSFVAEDFKLIG 514
I AED G
Sbjct: 224 DYPIKIVPAEDGSGAG 239
>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH
{Mouse (Mus musculus), cluster 5 [TaxId: 10090]}
Length = 116
Score = 26.6 bits (58), Expect = 4.1
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 311 NAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQ 370
L+ + D + S+ +L L + R++ AR + DY GQ
Sbjct: 59 YNSALKSRLSISKDNSKSQVFLKMNSLHTDDTA----------RYYCARERDYRLDYWGQ 108
Query: 371 G 371
G
Sbjct: 109 G 109
>d2ed6a1 b.170.1.1 (A:32-201) Envelope protein VP28 {White spot
syndrome virus, WSSV [TaxId: 92652]}
Length = 170
Score = 27.0 bits (59), Expect = 4.9
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 23/102 (22%)
Query: 412 FAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHV 471
+ + NG+ QM + AD+ ++T + ++ G + G V
Sbjct: 46 LGKIKIRNGKSDAQMKEEDADL------------VITPVEGRALEVTVGQNLTFEGTFKV 93
Query: 472 YRNHVRPLE-EQLQKLPKPFPILKINPEKKDIDSFVAEDFKL 512
+ N R + +Q +P KINP K +FV
Sbjct: 94 WNNTSRKINITGMQMVP------KINPSK----AFVGSSNTS 125
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 26.7 bits (58), Expect = 4.9
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 365 ADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQ-FYMA--NGE 421
++S + + + +K N ND R +LS + + P F A N
Sbjct: 8 YNFSRDELEDIFALTDKYSKNLNDTRKILS---GKTISIAFFEPSTRTYLSFQKAIINLG 64
Query: 422 LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVC 455
+ + N+A + +
Sbjct: 65 GDVIGFSGEESTSVAKGENLADTIRMLNNYSDGI 98
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 27.2 bits (60), Expect = 5.7
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 372 FDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELS 423
L + +K+ + RR +L A + MA +F + +A+ +L+
Sbjct: 57 AGVLQSIWHKLHQQKDYRRWILDA-----VPAMATSEALLFLKRTLASEQLT 103
>d1k0ha_ b.106.1.2 (A:) Tail attachment protein gpF3 {Bacteriophage
lambda [TaxId: 10710]}
Length = 117
Score = 26.0 bits (57), Expect = 6.8
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 431 ADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 478
+ G GV +S +L V L GD + + + V P
Sbjct: 50 SYAGQGVRVEGSSPSL-FVRTDEVRQLRRGDTLTIGEENFWVDR-VSP 95
>gi|154685965|ref|YP_001421126.1|(1-144:304) aspartate
carbamoyltransferase catalytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
Full=Aspartate carbamoyltransferase; AltName:
Full=Aspartate transcarbamylase; Short=ATCase
gi|154351816|gb|ABS73895.1| PyrB [Bacillus
amyloliquefaciens FZB42] E=3e-60 s/c=1.62 id=76%
cov=101%
Length = 144
Score = 26.0 bits (56), Expect = 8.2
Identities = 12/112 (10%), Positives = 22/112 (19%), Gaps = 4/112 (3%)
Query: 365 ADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSC 424
++ S +LL IK + L P F +A +L
Sbjct: 8 SELSAAEITELLREAKAIKEGTVRHDLA----GKFVANLFFEPSTRTRFSFEVAEKKLGM 63
Query: 425 QMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHV 476
+ + T R ++
Sbjct: 64 NVLSLDDTSTSVQKGESLYDTVKTLESIGADACVIRHSTDEYYKDLTGRVNI 115
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus
subtilis [TaxId: 1423]}
Length = 377
Score = 26.5 bits (57), Expect = 9.2
Identities = 21/177 (11%), Positives = 37/177 (20%), Gaps = 13/177 (7%)
Query: 361 TNMHADYSGQGFDQLL---DVINKIKNNPNDRRIVLSA-------WNPSDLKLMALPPCH 410
T H Q D D I + S + L
Sbjct: 38 TAQHRQMLDQVLDAFHIKPDFDLNIMKERQTLAEITSNALVRLDELFKDIKPDIVLVHGD 97
Query: 411 MFAQFYMANG--ELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGD 468
F + + A + G ++ L M + DL +
Sbjct: 98 TTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAPTGQAKDN 157
Query: 469 AHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKM 525
+ + + V ED K+I H++ +
Sbjct: 158 LLKENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGED-KMILLTAHRRENLGE 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,036,032
Number of extensions: 99071
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 40
Length of query: 527
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 438
Effective length of database: 1,185,626
Effective search space: 519304188
Effective search space used: 519304188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)