BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009748
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 137/303 (45%), Gaps = 55/303 (18%)
Query: 148 AESVFLVGPMSF-SGPYCQANIIFQLDGTIIAPTGSKDW-------------GKGLLWWL 193
+ SVFL GP+S SG +++ T+ A +K + GKG ++
Sbjct: 48 STSVFLSGPLSLPSG----VSLLIDKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFI 103
Query: 194 DFTKLKGITIQGKGIIDGRGSVWWQDYP---YDDPIDDESKLIIPLHNNTLPYKPPTPIR 250
I G G IDG+G V QD ++ D + K L NT
Sbjct: 104 TAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVK---KLKQNT---------- 150
Query: 251 SELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSP 310
P ++ S N T+ +++ NSP H+ F + G ++ +P +
Sbjct: 151 -----------PRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTAR 199
Query: 311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC-----GPGHGISIGSLG 365
NTDGI +SK++ I SN+A GDD V+I+ N++ G GHG+SIGS
Sbjct: 200 NTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-- 257
Query: 366 KDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFY 425
V N+TV D+ M+ T NG+RIK+ + +G V GV +SN+ + V PIVID Y
Sbjct: 258 ---ETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
Query: 426 CDK 428
K
Sbjct: 315 EKK 317
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 11/184 (5%)
Query: 275 VTGITIQNSPQCHLKFDNCIGVVVHDVSV-SSPGDSP---NTDGIHLQNSKDVLIHTSNL 330
+ G+ + N+P ++ + V+DV + +S GDS NTD + +S V I +N+
Sbjct: 113 IKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANV 172
Query: 331 ACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLG--KDNTKACVSNITVRDVMMHNTMN 388
DDC++I +G +N+ C GHG+SIGS+G DNT V +T+ + + N+ N
Sbjct: 173 KNQDDCLAINSG-TNITFTGGTCSGGHGLSIGSVGGRSDNT---VKTVTISNSKIVNSDN 228
Query: 389 GVRIKTWQGGSGSVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSGITYER 447
GVRIKT G +GSV GV +S I +S + + IVI+Q Y + S T+ V ++G+T +
Sbjct: 229 GVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSK 288
Query: 448 VKGT 451
+ G+
Sbjct: 289 ITGS 292
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 138/306 (45%), Gaps = 50/306 (16%)
Query: 181 GSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNT 240
G K+W KG L L +T+ +IDG GS WW
Sbjct: 54 GYKEW-KGPLIRFGGKDLT-VTMADGAVIDGDGSRWWDS--------------------- 90
Query: 241 LPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHD 300
+ GK KP + + + T GI I+N+P + V ++D
Sbjct: 91 ---------KGTNGGKT---KPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLND 137
Query: 301 VSV-SSPGDSP---NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPG 356
++ +S GD NTDG + S V I + + DDC++I +G S + C G
Sbjct: 138 FTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGGT-CSGG 196
Query: 357 HGISIGSLG--KDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSE 414
HG+SIGS+G DNT V N+T+ D + N+ NGVRIKT +G V + +SNIQ+S
Sbjct: 197 HGLSIGSVGGRDDNT---VKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSG 253
Query: 415 V-QLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYT--VKPVHFACSDSLPCVDVT 471
+ IVI+Q Y + S ++ + ++ +T + V GT V+ C D C D T
Sbjct: 254 ITDYGIVIEQDYENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDG-SCSDWT 312
Query: 472 LSVIEL 477
S ++L
Sbjct: 313 WSGVDL 318
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 160/379 (42%), Gaps = 55/379 (14%)
Query: 88 LAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTXXXXXXXXXXXXXXXSIMVVP 147
LA + + + V P N+ DFGA+G+G +D + ++VP
Sbjct: 6 LAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVP 65
Query: 148 AESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKL--------- 198
E VFL GP+ + ++NI + GTI + + +L + +L
Sbjct: 66 -EGVFLTGPI-----HLKSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYA 119
Query: 199 ---KGITIQGKGIIDGRG--SVWW-----QDYPYDDPIDDESKLIIPLHNNTLPYKPPTP 248
+ + I G G++DG WW +D+ + + + ++ + + L + TP
Sbjct: 120 LDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMA---ERGTP 176
Query: 249 IRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD 308
+ + GK ++P+ ++FY NV V G+ I NSP + V++ ++ +SS G
Sbjct: 177 VEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG- 235
Query: 309 SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG-----------------CSNVYVHNV 351
PN DGI ++ K +LI GDD V I++G N+ +
Sbjct: 236 -PNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQA 294
Query: 352 NCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLF-SNI 410
+ G G+ IGS V N+ R+ + N +R+KT G ++ + F N+
Sbjct: 295 SHG---GLVIGS----EMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNV 347
Query: 411 QVSEVQLPIVIDQFYCDKS 429
V+ + I I+ Y ++
Sbjct: 348 AVNVSEEVIRINLRYDNEE 366
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 14/237 (5%)
Query: 265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVL 324
LR + +V I + ++P H D C V+++++ G+ DGI + S ++
Sbjct: 130 LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWGS-NIW 187
Query: 325 IHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMH 384
+H + D+CV++++ +N+ V ++ C G ++GSLG D V++I R+V
Sbjct: 188 VHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTW 244
Query: 385 NTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGIT 444
++ IK+ GGSG+V VL N + ID ++ + V L+ IT
Sbjct: 245 SSNQMYMIKS-NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGD--GVQLNNIT 301
Query: 445 YERVKGT----YTVKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGE 497
+ KGT T P+ CSD+ PC D+TL I + +Y C A+G
Sbjct: 302 VKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELY--LCRSAYGS 356
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 8/196 (4%)
Query: 261 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSP-GDSP---NTDGIH 316
KP +G + ++TG+ I+N+P + DV++++ GD+ NTD
Sbjct: 125 KPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDITFTDVTINNADGDTQGGHNTDAFD 183
Query: 317 LQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNI 376
+ NS V I + DDC+++ +G N++ C GHG+SIGS+G D + V N+
Sbjct: 184 VGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVG-DRSNNVVKNV 241
Query: 377 TVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQ-LPIVIDQFYCDKSTCKNQT 435
T+ + N+ N VRIKT G +GSV + +SNI +S + +VI Q Y D T
Sbjct: 242 TIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPT 301
Query: 436 SAVALSGITYERVKGT 451
+ V + + E V G+
Sbjct: 302 NGVTIQDVKLESVTGS 317
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 255 GKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV-SSPGDSP--- 310
G KP + N ++G+ I NSP + + D+++ +S GD
Sbjct: 97 GNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGH 156
Query: 311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLG--KDN 368
NTD + S V I + + DDCV++ +G N+Y C GHG+SIGS+G DN
Sbjct: 157 NTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGRSDN 215
Query: 369 TKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEV-QLPIVIDQFYCD 427
T V N+T D + N+ NGVRIKT +GSV V + +I ++ + + IV+ Q Y D
Sbjct: 216 T---VKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGD 272
Query: 428 KSTCKNQTSAVALSGITYERVKGT 451
S+ T+ V ++ + V G+
Sbjct: 273 TSSTP--TTGVPITDFVLDNVHGS 294
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTK 370
NTDG + +S V + +++ DDCV++ +G +N+ V N+ C GHG+SIGS+G +
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGK-SD 222
Query: 371 ACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQ-LPIVIDQFYCDKS 429
V + + N+ NG RIK+ G +G++ V + NI ++ + + + Q Y +
Sbjct: 223 NVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGG 282
Query: 430 TCKNQTSAVALSGITYERVKGT 451
T+ V +S I + +V GT
Sbjct: 283 PTGKPTNGVKISNIKFIKVTGT 304
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 285 QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344
HL D G+ V D + + NTDG + + +V I + DDC++I G +
Sbjct: 128 DAHLTLD---GITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDDCIAINDG-N 182
Query: 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ-GGSGSVQ 403
N+ N C GHGISIGS+ T VSN+ ++ + +M GVRIK + S SV
Sbjct: 183 NIRFENNQCSGGHGISIGSIA---TGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVS 239
Query: 404 GVLFSNIQVSEV-QLPIVIDQFYCD 427
GV + +S + + ++I Q Y D
Sbjct: 240 GVTYDANTISGIAKYGVLISQSYPD 264
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 33/248 (13%)
Query: 198 LKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIP---------LHNNTLPYKPPTP 248
+ I I G G+IDG G W + + I DE +P +H + + K
Sbjct: 258 FRNIRITGSGVIDGNG--WLRAKTAE--ITDELGRSLPQYVASKNSKVHEDGILAKNQVE 313
Query: 249 IR----SELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVS 304
+L + + + G NV + G T++N P H + VV + +
Sbjct: 314 KAVSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRN-PAFHGIMNLENHNVVANGLIH 372
Query: 305 SPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN----------VYVHNVNCG 354
D+ N DGI NS++V++ + GDDC++ G ++ N
Sbjct: 373 QTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFR 432
Query: 355 PGHG-ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVS 413
GHG I GS +T A + +I + +M+ T G+R K+ G + V F N +
Sbjct: 433 MGHGAIVTGS----HTGAWIEDILAENNVMYLTDIGLRAKSTSTIGGGARNVTFRNNAMR 488
Query: 414 EVQLPIVI 421
++ +++
Sbjct: 489 DLAKQVMV 496
>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
Length = 579
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 227 DDESKLIIPLH-NNTLPYKPPTPIRSELSGKMPSI--KPTALRFYGS 270
D + L++ L NNTLPY P P RSE G P + KPT R+Y S
Sbjct: 168 DLTASLMVALDTNNTLPYTPAAP-RSETLGFYPWLPTKPTQYRYYLS 213
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 110 FNVKDFGAKGNGVSDD 125
+NVKDFGA G+GVSDD
Sbjct: 3 YNVKDFGALGDGVSDD 18
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 309 SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVN 352
N +G+H N+K++L DDCVS+Q C+ V + N
Sbjct: 343 EKNKEGLH--NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSAN 384
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 309 SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVN 352
N +G+H N+K++L DDCVS+Q C+ V + N
Sbjct: 343 EKNKEGLH--NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSAN 384
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 309 SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVN 352
N +G+H N+K++L DDCVS+Q C+ V + N
Sbjct: 343 EKNKEGLH--NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSAN 384
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 309 SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVN 352
N +G+H N+K++L DDCVS+Q C+ V + N
Sbjct: 343 EKNKEGLH--NAKEILTRLGVEPSDDDCVSVQHVCTIVSFRSAN 384
>pdb|1K8F|A Chain A, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|B Chain B, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|C Chain C, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|D Chain D, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
Length = 157
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVV----VHDVSVSSPGDSPN-----TD 313
T L+ G N IT+ N + L FD+ +G+V DV V G P TD
Sbjct: 41 TTLQIKGKIN----SITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTD 96
Query: 314 GIHLQNSKDVL 324
G H SK+ L
Sbjct: 97 GCHAYLSKNSL 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,188,535
Number of Sequences: 62578
Number of extensions: 699393
Number of successful extensions: 1786
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1751
Number of HSP's gapped (non-prelim): 23
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)