Query 009748
Match_columns 527
No_of_seqs 263 out of 2006
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 16:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 2.5E-78 5.4E-83 643.8 37.8 383 106-521 49-436 (443)
2 PLN03003 Probable polygalactur 100.0 3.7E-76 8E-81 623.3 32.8 368 106-514 20-394 (456)
3 PLN02218 polygalacturonase ADP 100.0 2.3E-75 4.9E-80 618.7 34.6 363 106-508 64-430 (431)
4 PLN02155 polygalacturonase 100.0 6E-75 1.3E-79 609.1 36.3 368 105-511 23-394 (394)
5 PLN03010 polygalacturonase 100.0 4.1E-73 8.8E-78 596.6 36.0 355 106-509 43-403 (409)
6 PLN02188 polygalacturonase/gly 100.0 1.5E-71 3.4E-76 585.6 36.4 367 106-509 33-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 3.4E-56 7.3E-61 460.7 26.2 319 139-497 4-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 2.1E-41 4.5E-46 363.3 22.0 278 104-422 77-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 1.4E-23 3E-28 219.6 19.1 246 106-414 34-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.8 1.4E-19 3E-24 175.8 17.0 213 109-390 1-224 (225)
11 PLN02793 Probable polygalactur 99.8 2.8E-18 6.2E-23 183.6 23.7 220 165-453 142-397 (443)
12 PLN02218 polygalacturonase ADP 99.8 8.1E-18 1.8E-22 179.4 22.9 170 264-452 217-410 (431)
13 PLN02188 polygalacturonase/gly 99.8 1.2E-17 2.5E-22 177.0 22.5 173 264-453 180-377 (404)
14 PLN03003 Probable polygalactur 99.8 1.2E-17 2.5E-22 178.1 22.0 229 165-462 112-373 (456)
15 PF00295 Glyco_hydro_28: Glyco 99.8 1.5E-17 3.2E-22 172.5 19.2 170 264-452 117-310 (326)
16 PLN02155 polygalacturonase 99.8 3E-17 6.5E-22 173.2 19.7 172 264-453 170-366 (394)
17 PF03718 Glyco_hydro_49: Glyco 99.7 2.1E-16 4.6E-21 167.1 22.3 281 142-481 233-555 (582)
18 PLN03010 polygalacturonase 99.7 2.2E-16 4.9E-21 167.1 22.4 215 165-453 138-377 (409)
19 TIGR03805 beta_helix_1 paralle 99.5 3E-13 6.5E-18 139.6 16.5 137 268-414 60-202 (314)
20 COG5434 PGU1 Endopygalactoruna 99.1 2.2E-10 4.9E-15 124.4 12.2 154 284-453 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 98.7 1.9E-06 4.2E-11 89.2 19.7 228 129-423 1-251 (314)
22 PF13229 Beta_helix: Right han 98.5 7.1E-07 1.5E-11 81.1 9.8 139 264-421 2-144 (158)
23 TIGR03808 RR_plus_rpt_1 twin-a 98.4 9.8E-06 2.1E-10 86.2 16.0 145 264-421 108-290 (455)
24 PF12541 DUF3737: Protein of u 98.3 1.7E-06 3.7E-11 85.5 8.4 123 266-416 93-226 (277)
25 smart00656 Amb_all Amb_all dom 98.2 1.7E-05 3.7E-10 76.3 12.4 120 288-411 34-167 (190)
26 PF12541 DUF3737: Protein of u 98.2 8.5E-06 1.8E-10 80.6 9.7 82 288-392 150-231 (277)
27 COG3866 PelB Pectate lyase [Ca 98.2 4.5E-05 9.7E-10 76.8 14.5 119 265-408 119-249 (345)
28 PF13229 Beta_helix: Right han 98.1 1.1E-05 2.4E-10 73.2 9.2 118 264-394 25-146 (158)
29 PF05048 NosD: Periplasmic cop 98.1 3E-05 6.5E-10 76.7 12.9 127 264-407 37-165 (236)
30 COG3866 PelB Pectate lyase [Ca 98.1 3.6E-05 7.8E-10 77.4 13.0 74 334-415 144-229 (345)
31 PRK10123 wcaM putative colanic 98.1 0.00011 2.4E-09 73.3 15.9 58 106-178 31-90 (464)
32 PF05048 NosD: Periplasmic cop 98.1 3.2E-05 6.9E-10 76.5 11.3 135 263-420 14-150 (236)
33 PF00544 Pec_lyase_C: Pectate 97.9 5.7E-05 1.2E-09 73.3 8.7 112 271-386 21-158 (200)
34 PF03718 Glyco_hydro_49: Glyco 97.8 0.00025 5.5E-09 76.5 14.0 173 286-478 321-513 (582)
35 PF07602 DUF1565: Protein of u 97.8 0.00054 1.2E-08 68.4 14.9 40 126-173 15-59 (246)
36 PF14592 Chondroitinas_B: Chon 97.8 0.0004 8.6E-09 73.9 14.1 32 125-159 3-34 (425)
37 PLN02634 probable pectinestera 97.8 0.0042 9E-08 65.2 21.0 46 125-174 67-114 (359)
38 PLN02304 probable pectinestera 97.6 0.011 2.5E-07 62.3 22.1 50 120-174 82-133 (379)
39 smart00656 Amb_all Amb_all dom 97.6 0.0014 3E-08 63.2 14.2 134 264-409 33-188 (190)
40 COG3420 NosD Nitrous oxidase a 97.5 0.0041 9E-08 63.8 16.5 81 271-353 107-190 (408)
41 PRK10531 acyl-CoA thioesterase 97.5 0.0088 1.9E-07 64.0 19.4 52 118-174 87-141 (422)
42 PF12708 Pectate_lyase_3: Pect 97.4 0.0029 6.2E-08 61.1 13.3 122 273-418 94-223 (225)
43 PLN02773 pectinesterase 97.4 0.011 2.4E-07 61.3 17.6 46 125-174 16-63 (317)
44 PLN02480 Probable pectinestera 97.3 0.011 2.3E-07 62.0 16.6 47 124-174 58-106 (343)
45 PLN02708 Probable pectinestera 97.0 0.025 5.5E-07 62.9 16.8 46 125-174 252-300 (553)
46 PLN02665 pectinesterase family 96.9 0.09 2E-06 55.6 19.6 46 125-174 79-126 (366)
47 PLN02432 putative pectinestera 96.9 0.061 1.3E-06 55.2 17.4 46 125-174 22-69 (293)
48 PLN02682 pectinesterase family 96.9 0.073 1.6E-06 56.3 18.2 46 125-174 81-128 (369)
49 PLN02484 probable pectinestera 96.8 0.047 1E-06 61.2 17.0 47 125-174 283-331 (587)
50 PLN02916 pectinesterase family 96.8 0.072 1.6E-06 58.4 17.8 46 125-174 198-248 (502)
51 PLN02170 probable pectinestera 96.8 0.086 1.9E-06 58.1 18.4 46 125-174 236-284 (529)
52 PF00544 Pec_lyase_C: Pectate 96.7 0.0082 1.8E-07 58.3 9.1 88 268-355 43-157 (200)
53 PLN02176 putative pectinestera 96.7 0.11 2.4E-06 54.4 17.9 46 125-174 50-97 (340)
54 PLN02713 Probable pectinestera 96.7 0.074 1.6E-06 59.4 17.5 46 125-174 261-311 (566)
55 PLN02933 Probable pectinestera 96.7 0.073 1.6E-06 58.8 17.1 46 125-174 229-276 (530)
56 PLN02506 putative pectinestera 96.6 0.063 1.4E-06 59.5 16.5 46 125-174 243-290 (537)
57 PLN02497 probable pectinestera 96.5 0.15 3.2E-06 53.3 17.6 46 125-174 43-90 (331)
58 PLN02301 pectinesterase/pectin 96.5 0.11 2.3E-06 57.9 17.0 46 125-174 247-294 (548)
59 PLN02671 pectinesterase 96.5 0.14 3.1E-06 53.9 16.9 46 125-174 70-117 (359)
60 PLN02201 probable pectinestera 96.4 0.17 3.7E-06 55.9 17.8 46 125-174 217-264 (520)
61 PLN02314 pectinesterase 96.4 0.11 2.5E-06 58.2 16.5 46 125-174 289-336 (586)
62 PLN03043 Probable pectinestera 96.3 0.15 3.2E-06 56.8 17.0 80 266-354 308-392 (538)
63 PLN02416 probable pectinestera 96.3 0.13 2.7E-06 57.3 16.5 46 125-174 241-288 (541)
64 PLN02217 probable pectinestera 96.3 0.097 2.1E-06 59.3 15.7 140 267-416 333-487 (670)
65 PLN02488 probable pectinestera 96.3 0.22 4.7E-06 54.6 17.7 46 125-174 208-255 (509)
66 PF01696 Adeno_E1B_55K: Adenov 96.3 0.23 4.9E-06 52.6 17.2 85 268-359 118-204 (386)
67 PLN02468 putative pectinestera 96.3 0.12 2.6E-06 57.8 16.1 79 267-354 341-424 (565)
68 PLN02745 Putative pectinestera 96.3 0.17 3.7E-06 56.9 17.2 46 125-174 296-343 (596)
69 PLN02990 Probable pectinestera 96.2 0.2 4.4E-06 56.1 17.3 46 125-174 270-317 (572)
70 PLN02313 Pectinesterase/pectin 96.2 0.12 2.5E-06 58.2 15.2 46 125-174 286-333 (587)
71 PLN02995 Probable pectinestera 96.1 0.23 4.9E-06 55.3 16.8 46 125-174 234-283 (539)
72 PF12218 End_N_terminal: N ter 96.0 0.0063 1.4E-07 47.1 2.9 39 117-158 1-39 (67)
73 PLN02197 pectinesterase 95.9 0.2 4.3E-06 56.2 15.4 46 125-174 286-333 (588)
74 PF01095 Pectinesterase: Pecti 95.8 0.092 2E-06 54.2 11.8 47 124-174 10-58 (298)
75 PF03211 Pectate_lyase: Pectat 93.2 0.96 2.1E-05 44.4 10.9 53 295-353 62-115 (215)
76 COG3420 NosD Nitrous oxidase a 93.1 2.6 5.6E-05 43.9 14.1 107 269-390 75-197 (408)
77 KOG1924 RhoA GTPase effector D 92.8 0.13 2.9E-06 57.9 4.8 9 111-119 608-616 (1102)
78 COG4677 PemB Pectin methyleste 92.6 1.4 3E-05 45.6 11.3 47 124-174 92-141 (405)
79 TIGR03804 para_beta_helix para 89.8 0.36 7.9E-06 34.7 3.0 28 314-341 1-28 (44)
80 TIGR03804 para_beta_helix para 89.4 0.32 6.9E-06 35.0 2.5 40 288-332 2-41 (44)
81 PF03211 Pectate_lyase: Pectat 89.0 6 0.00013 38.9 11.7 136 267-409 57-194 (215)
82 PRK10123 wcaM putative colanic 86.7 1.5 3.3E-05 44.5 6.1 122 270-413 245-372 (464)
83 PF07602 DUF1565: Protein of u 84.0 7.8 0.00017 39.0 9.8 48 290-339 93-141 (246)
84 PLN02468 putative pectinestera 73.6 16 0.00035 41.1 9.3 111 292-415 343-460 (565)
85 PF08480 Disaggr_assoc: Disagg 73.1 15 0.00033 35.2 7.5 13 343-355 63-75 (198)
86 PRK10531 acyl-CoA thioesterase 72.5 24 0.00052 38.2 9.8 21 264-284 199-219 (422)
87 PLN02197 pectinesterase 71.2 21 0.00046 40.3 9.5 40 266-305 359-403 (588)
88 PF09251 PhageP22-tail: Salmon 71.1 37 0.00081 36.6 10.5 39 374-414 311-349 (549)
89 PLN02313 Pectinesterase/pectin 68.5 24 0.00052 40.0 9.2 111 293-415 361-477 (587)
90 PRK10781 rcsF outer membrane l 68.1 26 0.00057 31.9 7.6 20 6-25 1-20 (133)
91 PF09251 PhageP22-tail: Salmon 68.0 21 0.00045 38.4 7.9 79 321-414 264-366 (549)
92 PF01696 Adeno_E1B_55K: Adenov 67.9 20 0.00044 38.2 7.9 84 292-390 119-204 (386)
93 PRK13855 type IV secretion sys 64.5 27 0.00058 37.1 8.0 17 102-118 105-121 (376)
94 PLN02698 Probable pectinestera 63.5 42 0.00092 37.2 9.7 39 267-305 266-309 (497)
95 PRK09752 adhesin; Provisional 59.8 8.8 0.00019 46.2 3.8 9 168-176 1011-1019(1250)
96 PF14592 Chondroitinas_B: Chon 55.0 27 0.00058 37.9 6.2 97 322-423 224-330 (425)
97 PLN02773 pectinesterase 51.2 68 0.0015 33.5 8.3 83 264-355 95-182 (317)
98 COG5178 PRP8 U5 snRNP spliceos 50.8 14 0.0003 44.2 3.4 7 66-72 2-8 (2365)
99 PLN02698 Probable pectinestera 50.8 71 0.0015 35.5 8.8 114 291-416 267-386 (497)
100 PHA01732 proline-rich protein 46.9 25 0.00055 29.4 3.4 9 125-133 43-51 (94)
101 PF01690 PLRV_ORF5: Potato lea 45.8 18 0.00039 39.4 3.1 12 271-282 144-155 (465)
102 PF15621 PROL5-SMR: Proline-ri 42.2 1E+02 0.0022 27.3 6.6 23 6-28 1-23 (113)
103 PRK14864 putative biofilm stre 41.7 34 0.00073 29.8 3.6 20 5-24 4-23 (104)
104 KOG1923 Rac1 GTPase effector F 36.9 56 0.0012 37.7 5.3 7 491-497 699-705 (830)
105 smart00710 PbH1 Parallel beta- 35.8 34 0.00074 20.3 2.1 20 375-394 3-23 (26)
106 PRK09752 adhesin; Provisional 35.5 40 0.00086 40.9 4.1 7 439-445 1193-1199(1250)
107 smart00722 CASH Domain present 33.0 1.9E+02 0.0042 24.9 7.4 12 271-282 45-56 (146)
108 PF12273 RCR: Chitin synthesis 32.0 13 0.00028 33.4 -0.5 20 11-30 5-24 (130)
109 smart00722 CASH Domain present 31.7 77 0.0017 27.5 4.6 68 268-338 73-144 (146)
110 PF07172 GRP: Glycine rich pro 30.5 63 0.0014 27.6 3.5 6 26-31 22-27 (95)
111 KOG2675 Adenylate cyclase-asso 28.3 66 0.0014 34.8 3.9 13 264-276 355-367 (480)
112 PF01095 Pectinesterase: Pecti 28.2 1.2E+02 0.0026 31.4 5.8 78 267-354 83-166 (298)
113 PF08480 Disaggr_assoc: Disagg 27.2 2.6E+02 0.0056 27.0 7.3 62 322-387 3-77 (198)
114 PLN02634 probable pectinestera 26.5 3.9E+02 0.0084 28.5 9.2 18 267-284 145-162 (359)
115 PF06679 DUF1180: Protein of u 25.7 2.5E+02 0.0055 26.5 6.9 11 125-135 90-100 (163)
116 KOG2675 Adenylate cyclase-asso 25.1 63 0.0014 35.0 3.1 9 31-39 130-138 (480)
117 COG4677 PemB Pectin methyleste 25.0 1.2E+02 0.0026 31.8 5.0 26 112-137 84-109 (405)
118 PLN02217 probable pectinestera 23.5 3.6E+02 0.0077 31.3 8.9 46 125-174 261-308 (670)
119 PF15240 Pro-rich: Proline-ric 23.2 48 0.001 31.7 1.6 15 9-23 2-16 (179)
120 PLN02665 pectinesterase family 23.2 5E+02 0.011 27.8 9.4 82 264-354 147-238 (366)
121 PLN02480 Probable pectinestera 23.0 1.4E+02 0.0031 31.5 5.3 109 293-415 131-252 (343)
122 PLN02671 pectinesterase 22.8 5.1E+02 0.011 27.6 9.3 20 264-283 147-166 (359)
123 PLN02170 probable pectinestera 22.1 5.8E+02 0.013 28.7 9.9 41 320-362 340-380 (529)
124 PLN02990 Probable pectinestera 22.0 1.2E+03 0.026 26.5 14.3 113 292-416 345-463 (572)
125 PRK13855 type IV secretion sys 21.8 3.8E+02 0.0082 28.7 8.0 8 14-21 42-49 (376)
126 PLN02708 Probable pectinestera 21.5 1.1E+02 0.0024 34.5 4.3 112 291-415 327-449 (553)
127 PF07462 MSP1_C: Merozoite sur 21.4 1.2E+02 0.0026 33.8 4.4 7 143-149 363-369 (574)
128 KOG1094 Discoidin domain recep 21.0 1.4E+02 0.003 34.0 4.8 10 275-284 600-609 (807)
129 PLN02682 pectinesterase family 20.8 3.8E+02 0.0082 28.7 7.9 79 264-362 156-235 (369)
130 PLN02432 putative pectinestera 20.3 4.1E+02 0.0089 27.5 7.8 17 267-283 90-106 (293)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.5e-78 Score=643.83 Aligned_cols=383 Identities=42% Similarity=0.784 Sum_probs=342.8
Q ss_pred CCcceeeecccccCCCCCcchHHHHHHHHhccc-ceeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCcc
Q 009748 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184 (527)
Q Consensus 106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~-~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~~ 184 (527)
..++|||+||||+|||.+|||+|||+||++||. .||++|+||+|.+|++++|.|+|| |+++++|+++|+|+++.+..+
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gp-cks~vtL~l~g~l~~~~d~~~ 127 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGP-CKAKLTLQISGTIIAPKDPDV 127 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCc-cCCCeEEEEEEEEEccCChHH
Confidence 348999999999999999999999999996665 578999999997799999999998 899999999999999999999
Q ss_pred ccc-ceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcc
Q 009748 185 WGK-GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT 263 (527)
Q Consensus 185 ~~~-~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~ 263 (527)
|+. ....||.+.+++||+|+|.|+|||+|+.||........ ......||+
T Consensus 128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~-----------------------------~~~~~~rP~ 178 (443)
T PLN02793 128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINH-----------------------------TNPCRHAPT 178 (443)
T ss_pred ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccC-----------------------------CCCccCCce
Confidence 974 34679999999999999999999999999975110000 011124899
Q ss_pred eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs 343 (527)
+|+|.+|+|++|+|++++|+|+|++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||++++++
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s 258 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNS 258 (443)
T ss_pred EEEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCc
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ceeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEee
Q 009748 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQ 423 (527)
Q Consensus 344 ~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~~ 423 (527)
+||+|+||.|.++|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++.+||.|++
T Consensus 259 ~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q 338 (443)
T PLN02793 259 SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQ 338 (443)
T ss_pred CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEe
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred eeec-CCccccccceEEeeceeeeEeeeeEEe-eeeeeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhcccCCCC
Q 009748 424 FYCD-KSTCKNQTSAVALSGITYERVKGTYTV-KPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTP 501 (527)
Q Consensus 424 ~y~~-~~~~~~~~~~~~i~nItf~NI~gt~~~-~pi~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~~~~~ 501 (527)
+|++ ...|.+.++++.|+||+|+||+++... .++.|.|++..||+||+|+||+|....+. ...++|||++|...+.
T Consensus 339 ~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~--~~~~~C~n~~g~~~~~ 416 (443)
T PLN02793 339 YYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD--FTESFCWEAYGSSSGQ 416 (443)
T ss_pred eecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC--CCCcEEEccEEeECCe
Confidence 9987 446877788899999999999999753 57999999999999999999999877543 3357899999999877
Q ss_pred CCCCcchhccCCCCCCC-CCC
Q 009748 502 THPPIACLQKGKRPSNR-PQS 521 (527)
Q Consensus 502 ~~~p~~c~~~~~~~~~~-~~~ 521 (527)
..|| +||+.+.|...+ +||
T Consensus 417 ~~p~-~C~~~~~~~~~~~~~~ 436 (443)
T PLN02793 417 VYPP-PCFSDSTSFIKQKVQS 436 (443)
T ss_pred EcCC-ccccCCCcccccccCC
Confidence 6665 899998885533 444
No 2
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=3.7e-76 Score=623.31 Aligned_cols=368 Identities=38% Similarity=0.755 Sum_probs=331.1
Q ss_pred CCcceeeecccccCCCCCcchHHHHHHHHhccc-ceeeeEEecCceeEEEeeeccccccccc-eEEEEecceEEccCCCc
Q 009748 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQA-NIIFQLDGTIIAPTGSK 183 (527)
Q Consensus 106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~-~gg~~V~iP~G~~yl~~~l~l~g~~~~s-ni~l~~~Gtl~~~~~~~ 183 (527)
.+++|||++|||+|||++|||+|||+||++||. .|+++|+||+|.+|++++|.|.|| |++ .+.++++|+|+++.. .
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gp-ck~~~~~~~i~G~i~ap~~-~ 97 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGS-CKSTPVFVQMLGKLVAPSK-G 97 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCC-ccCcceeeccCceEecCcc-c
Confidence 457899999999999999999999999999886 478999999998899999999997 665 488899999998654 4
Q ss_pred ccccceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcc
Q 009748 184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT 263 (527)
Q Consensus 184 ~~~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~ 263 (527)
.|.+....||.|.+++|++|+|.|+|||+|+.||... ..||+
T Consensus 98 ~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~--------------------------------------~~rP~ 139 (456)
T PLN03003 98 NWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK--------------------------------------GSRPT 139 (456)
T ss_pred cccCCCcceEEEEcccceEEeccceEeCCchhhhhcc--------------------------------------cCCce
Confidence 6766667899999999999999999999999999751 13899
Q ss_pred eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs 343 (527)
+++|.+|+|++|+|++++|+|+|++++..|++|+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||++|+++
T Consensus 140 ~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs 219 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGT 219 (456)
T ss_pred EEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ceeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEee
Q 009748 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQ 423 (527)
Q Consensus 344 ~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~~ 423 (527)
+||+|+||+|.++|||+|||+|+++..+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++++||.|+|
T Consensus 220 ~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq 299 (456)
T PLN03003 220 SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQ 299 (456)
T ss_pred ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEc
Confidence 99999999999999999999998766688999999999999999999999999999999999999999999999999999
Q ss_pred eeecCC---ccccccceEEeeceeeeEeeeeEEe-eeeeeeecCCCceeeeeeeeEeecchh-hhhcccCchhhhhcccC
Q 009748 424 FYCDKS---TCKNQTSAVALSGITYERVKGTYTV-KPVHFACSDSLPCVDVTLSVIELKPVQ-ERYHMYDPYCWQAFGES 498 (527)
Q Consensus 424 ~y~~~~---~~~~~~~~~~i~nItf~NI~gt~~~-~pi~i~c~~~~~~~~I~f~nV~v~~~~-~~~~~~~~~c~~v~g~~ 498 (527)
+|++.. .|...++++.|+||+|+||+||... .++.|.|++..||+||+|+||+|.... +......+.|+||+|..
T Consensus 300 ~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~ 379 (456)
T PLN03003 300 FYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGAS 379 (456)
T ss_pred ccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEecccccc
Confidence 998532 2445667899999999999998654 578999999999999999999998763 11224568999999977
Q ss_pred CCCCCCCcchhccCCC
Q 009748 499 TTPTHPPIACLQKGKR 514 (527)
Q Consensus 499 ~~~~~~p~~c~~~~~~ 514 (527)
. ..+||.+||+.+.-
T Consensus 380 ~-~~~~~~~C~~~~~~ 394 (456)
T PLN03003 380 T-IAVPGLECLELSTD 394 (456)
T ss_pred C-ceECCCCccccCCC
Confidence 5 67777799987543
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.3e-75 Score=618.65 Aligned_cols=363 Identities=40% Similarity=0.767 Sum_probs=327.9
Q ss_pred CCcceeeecccccCCCCCcchHHHHHHHHhcccc-eeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCcc
Q 009748 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184 (527)
Q Consensus 106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~-gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~~ 184 (527)
.+++|||+||||+|||++|||+|||+||++||.. |+++|+||+|.+|++++|.|+|| |+++++|+++|+|+++++..+
T Consensus 64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp-~ks~~~l~l~g~L~~s~d~~~ 142 (431)
T PLN02218 64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGP-CKSIRTVQIFGTLSASQKRSD 142 (431)
T ss_pred CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCc-cCCceEEEEEEEEEeCCChhh
Confidence 3579999999999999999999999999766654 66799999997799999999998 889999999999999999988
Q ss_pred cccceeeeEEeeeeeceEEeec--eEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCc
Q 009748 185 WGKGLLWWLDFTKLKGITIQGK--GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKP 262 (527)
Q Consensus 185 ~~~~~~~~i~~~~~~nI~I~G~--G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP 262 (527)
|.. ...||.+.+++||+|+|. |+|||+|+.||........ ......||
T Consensus 143 y~~-~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~-----------------------------~~~~~~rP 192 (431)
T PLN02218 143 YKD-ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNK-----------------------------AKPCTKAP 192 (431)
T ss_pred ccc-cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCC-----------------------------cCccCcCC
Confidence 853 457999999999999996 9999999999975210000 00012489
Q ss_pred ceEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccC
Q 009748 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG 342 (527)
Q Consensus 263 ~~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sg 342 (527)
++|.|++|+|++|+||+++|+|+|++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|+|
T Consensus 193 ~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg 272 (431)
T PLN02218 193 TALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG 272 (431)
T ss_pred EEEEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CceeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEe
Q 009748 343 CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVID 422 (527)
Q Consensus 343 s~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~ 422 (527)
++||+|+||+|.++|||+|||+|++...+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++++||.|+
T Consensus 273 s~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Id 352 (431)
T PLN02218 273 SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIID 352 (431)
T ss_pred CceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEE
Confidence 99999999999999999999999876678999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCccccccceEEeeceeeeEeeeeEEe-eeeeeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhcccCCCC
Q 009748 423 QFYCDKSTCKNQTSAVALSGITYERVKGTYTV-KPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTTP 501 (527)
Q Consensus 423 ~~y~~~~~~~~~~~~~~i~nItf~NI~gt~~~-~pi~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~~~~~ 501 (527)
+.|++...|...++.+.|+||+|+||+++... .++.+.|++..||+||+|+||+|.+. ...|+||+|...+.
T Consensus 353 q~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~-------~~~c~n~~~~~~~~ 425 (431)
T PLN02218 353 QDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG-------KATCTNANVVDKGA 425 (431)
T ss_pred eeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC-------eeeEEEeeEEEccc
Confidence 99998777887778899999999999999753 67899999999999999999999863 24699999998866
Q ss_pred CCCCcch
Q 009748 502 THPPIAC 508 (527)
Q Consensus 502 ~~~p~~c 508 (527)
..| .|
T Consensus 426 ~~p--~c 430 (431)
T PLN02218 426 VSP--QC 430 (431)
T ss_pred CCC--CC
Confidence 555 46
No 4
>PLN02155 polygalacturonase
Probab=100.00 E-value=6e-75 Score=609.12 Aligned_cols=368 Identities=37% Similarity=0.725 Sum_probs=327.6
Q ss_pred CCCcceeeecccccCCCCCcchHHHHHHHHhcc-cceeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCc
Q 009748 105 HHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAAC-KVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSK 183 (527)
Q Consensus 105 ~~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~-~~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~ 183 (527)
..+++|||++|||++||++|||+|||+||++|| +.||++|+||+| .|++++|.|.|| ||++++|+|+|+|+++.+..
T Consensus 23 ~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gp-cksnv~l~l~G~l~~~~d~~ 100 (394)
T PLN02155 23 SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGP-CKSKITFQVAGTVVAPEDYR 100 (394)
T ss_pred cCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEccc-CCCCceEEEeeEEECccccc
Confidence 355799999999999999999999999997555 457899999999 899999999998 99999999999999988877
Q ss_pred ccccceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcc
Q 009748 184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT 263 (527)
Q Consensus 184 ~~~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~ 263 (527)
.|.. ...|+.+.++++++|+| |+|||+|+.||..... . ... ..+|+
T Consensus 101 ~~~~-~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~--------~-----------------------~~~-~~~p~ 146 (394)
T PLN02155 101 TFGN-SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS--------G-----------------------QNC-PPGVR 146 (394)
T ss_pred cccc-cceeEEEECcCCCEEEc-cEEecCceeEEEcccC--------C-----------------------CCC-CCccc
Confidence 7743 24699999999999999 9999999999975110 0 000 13678
Q ss_pred eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs 343 (527)
+++|.+|++++|+||+++|+|+|++++..|++|+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||++++++
T Consensus 147 ~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs 226 (394)
T PLN02155 147 SISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGT 226 (394)
T ss_pred ceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ceeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeecc-CcceeeeEEeeeeEeeeeeecEEEe
Q 009748 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQG-GSGSVQGVLFSNIQVSEVQLPIVID 422 (527)
Q Consensus 344 ~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g-~~G~V~NI~f~Ni~v~~v~~pi~I~ 422 (527)
+||+|+||.|..+|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||+|.+ +.|.|+||+|+||+|+++++||.|+
T Consensus 227 ~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~ 306 (394)
T PLN02155 227 RNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIID 306 (394)
T ss_pred ceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEE
Confidence 999999999999999999999877557889999999999999999999999975 6799999999999999999999999
Q ss_pred eeeecCC-ccccccceEEeeceeeeEeeeeEE-eeeeeeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhcccCCC
Q 009748 423 QFYCDKS-TCKNQTSAVALSGITYERVKGTYT-VKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTT 500 (527)
Q Consensus 423 ~~y~~~~-~~~~~~~~~~i~nItf~NI~gt~~-~~pi~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~~~~ 500 (527)
|.|+... .|.+..+++.|+||+|+||+++.. ..++.|.|++..||+||+|+||++..... ....++|+||+|...+
T Consensus 307 q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~--~~~~~~C~n~~G~~~~ 384 (394)
T PLN02155 307 QNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKG--TPATSFCFNAVGKSLG 384 (394)
T ss_pred ecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCC--CccCcEEeccEeEEcc
Confidence 9998743 466666789999999999999976 35789999999999999999999998753 2346899999998765
Q ss_pred CCCCCcchhcc
Q 009748 501 PTHPPIACLQK 511 (527)
Q Consensus 501 ~~~~p~~c~~~ 511 (527)
.++|..||++
T Consensus 385 -~~~p~~c~~~ 394 (394)
T PLN02155 385 -VIQPTSCLNR 394 (394)
T ss_pred -cCCcccccCC
Confidence 4577799874
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=4.1e-73 Score=596.61 Aligned_cols=355 Identities=38% Similarity=0.738 Sum_probs=324.5
Q ss_pred CCcceeeecccccCCCCCcchHHHHHHHHhccccee--eeEEecCceeEEEeeecccccccc-ceEEEEecceEEccCCC
Q 009748 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQ-ANIIFQLDGTIIAPTGS 182 (527)
Q Consensus 106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~gg--~~V~iP~G~~yl~~~l~l~g~~~~-sni~l~~~Gtl~~~~~~ 182 (527)
.+++|||++|||++||++|||+|||+||++||..+| ++|+||+|++|++++|.|.+| |+ ++++|+++|+|+++++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~p-c~~~~v~l~l~G~l~~~~d~ 121 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGP-CKSTSIKVQLDGIIVAPSNI 121 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCC-CCCCcEEEEEccEEEccCCh
Confidence 457999999999999999999999999998886543 799999997799999999987 54 68999999999999999
Q ss_pred ccccc-ceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCC
Q 009748 183 KDWGK-GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIK 261 (527)
Q Consensus 183 ~~~~~-~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 261 (527)
.+|+. ....|+.|.+++||+|+|.|+|||+|+.||..
T Consensus 122 ~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~------------------------------------------ 159 (409)
T PLN03010 122 VAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEA------------------------------------------ 159 (409)
T ss_pred hhccCCCCcceEEEecccccEEeeceEEeCCCccccce------------------------------------------
Confidence 99964 24579999999999999999999999999963
Q ss_pred cceEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEecc
Q 009748 262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT 341 (527)
Q Consensus 262 P~~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~s 341 (527)
++|.+|+|++|+||+++|+|+|++++..|++|+|+|++|.++..++|+||||+.+|+||+|+||+|.++||||++|+
T Consensus 160 ---l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiks 236 (409)
T PLN03010 160 ---LHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINS 236 (409)
T ss_pred ---EEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecC
Confidence 68899999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCceeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEE
Q 009748 342 GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVI 421 (527)
Q Consensus 342 gs~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I 421 (527)
+++|+.|+++.|..+|||+|||+|+.++.+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++++||.|
T Consensus 237 gs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I 316 (409)
T PLN03010 237 GSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIII 316 (409)
T ss_pred CCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEE
Confidence 99999999999999999999999987667789999999999999999999999999999999999999999999999999
Q ss_pred eeeeecC-CccccccceEEeeceeeeEeeeeEEe-eeeeeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhcccCC
Q 009748 422 DQFYCDK-STCKNQTSAVALSGITYERVKGTYTV-KPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGEST 499 (527)
Q Consensus 422 ~~~y~~~-~~~~~~~~~~~i~nItf~NI~gt~~~-~pi~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~~~ 499 (527)
+|+|++. ..|...++++.|+||+|+||+||... .++.|.|++..+|+||+|+||+|....+. .....|+||+|...
T Consensus 317 ~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~--~~~~~C~nv~g~~~ 394 (409)
T PLN03010 317 DQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGE--KPKVECQNVEGESS 394 (409)
T ss_pred EeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCC--ccceEeeCcccccc
Confidence 9999874 45777789999999999999998654 68999999999999999999999876532 23578999999876
Q ss_pred CCCCCCcchh
Q 009748 500 TPTHPPIACL 509 (527)
Q Consensus 500 ~~~~~p~~c~ 509 (527)
+. ++|++||
T Consensus 395 ~~-~~~~~C~ 403 (409)
T PLN03010 395 DT-DLMRDCF 403 (409)
T ss_pred CC-CCCCccc
Confidence 55 5555899
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.5e-71 Score=585.62 Aligned_cols=367 Identities=37% Similarity=0.669 Sum_probs=320.8
Q ss_pred CCcceeeecccccCCCCCcchHHHHHHHHhccc-ceeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCcc
Q 009748 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184 (527)
Q Consensus 106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~-~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~~ 184 (527)
..++|||+||||+|||.+|||+|||+||++||. .||++|+||+| +|++++|.|.|| |++...|.+ +|+++++.++
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgp-c~~~s~v~l--~L~~s~d~~~ 108 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGP-CTNVSSLTF--TLKAATDLSR 108 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCC-cCcceeEEE--EEEcCCCHHH
Confidence 457999999999999999999999999986664 45789999999 899999999887 654444444 9999999999
Q ss_pred cccceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcce
Q 009748 185 WGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTA 264 (527)
Q Consensus 185 ~~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~ 264 (527)
|.. ...|+.+..++||+|+|.|+|||+|+.||..... +. .+....||++
T Consensus 109 y~~-~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~--~~----------------------------~~~~~~rP~~ 157 (404)
T PLN02188 109 YGS-GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKC--PI----------------------------RKDCKLLPTS 157 (404)
T ss_pred CCC-ccceEEEeceeeEEEEeeEEEeCCCccccccccc--cc----------------------------CCCCCcCceE
Confidence 974 3569999999999999999999999999975210 00 0111258999
Q ss_pred EEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCc
Q 009748 265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344 (527)
Q Consensus 265 i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~ 344 (527)
|.|.+|+|++|+|++++|+|+|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~ 237 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNS 237 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeecc--CcceeeeEEeeeeEeeeeeecEEEe
Q 009748 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQG--GSGSVQGVLFSNIQVSEVQLPIVID 422 (527)
Q Consensus 345 NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g--~~G~V~NI~f~Ni~v~~v~~pi~I~ 422 (527)
||+|+||.|..+|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||+|.+ +.|.|+||+|+||+|+++++||.|+
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~ 317 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIID 317 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEE
Confidence 99999999999999999999987777889999999999999999999999976 4589999999999999999999999
Q ss_pred eeeecCCcccc-ccceEEeeceeeeEeeeeEE-eeeeeeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhcccCCC
Q 009748 423 QFYCDKSTCKN-QTSAVALSGITYERVKGTYT-VKPVHFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGESTT 500 (527)
Q Consensus 423 ~~y~~~~~~~~-~~~~~~i~nItf~NI~gt~~-~~pi~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~~~~ 500 (527)
++|++...|.. .++.+.|+||+|+||+++.. ..++.|.|++..||+||+|+||+|....+. ....+.|+||+|...+
T Consensus 318 ~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~-~~~~~~C~nv~g~~~g 396 (404)
T PLN02188 318 QKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGE-GGTSSSCENVRAKYIG 396 (404)
T ss_pred ccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCC-CCcCceeEcceeEEcc
Confidence 99998666643 34678999999999999875 357899999999999999999999866321 2335789999999876
Q ss_pred CCCCCcchh
Q 009748 501 PTHPPIACL 509 (527)
Q Consensus 501 ~~~~p~~c~ 509 (527)
.. +|.+|+
T Consensus 397 ~~-~p~~C~ 404 (404)
T PLN02188 397 TQ-IPPPCP 404 (404)
T ss_pred cC-cCCCCC
Confidence 65 555885
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=3.4e-56 Score=460.73 Aligned_cols=319 Identities=35% Similarity=0.644 Sum_probs=273.7
Q ss_pred ceeeeEEecCceeEEEeeeccccccccceEEEEecceEEccCCCcccccceeeeEEeeeeeceEEeeceEeeCCceeeee
Q 009748 139 VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQ 218 (527)
Q Consensus 139 ~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~Gtl~~~~~~~~~~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~ 218 (527)
.++++|+||+| +|+++++.|.+ -|..++.++++|++.++.....|. . ..||.+.+++|++|+|.|+|||+|+.||.
T Consensus 4 ~~~~~v~vP~g-~~~~~~~~l~~-~l~~~~~~~l~G~~~~~~~~~~~~-~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 4 IGGGTVVVPAG-TYLLGPLFLKS-TLHSDVGLTLDGTINFSYDNWEGP-N-SALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp EEEESEEESTS-TEEEEETSEET-ECETTCEEEEESEEEEG-EESTSE---SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred CcCCEEEECCC-CeEEceeEEEc-ccCCCeEEEEEEEEEeCCCcccCC-c-cEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 45789999999 89999999965 245789999999999874443333 2 78999999999999999999999999998
Q ss_pred cCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcceEEEeeeeeEEEEEEEEecCCcceeeecceeEEEE
Q 009748 219 DYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVV 298 (527)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I 298 (527)
..... ......||++++|.+|++++|+|++++|+++|++++..|+||+|
T Consensus 80 ~~~~~-------------------------------~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i 128 (326)
T PF00295_consen 80 GSGDA-------------------------------NNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTI 128 (326)
T ss_dssp SCTTH-------------------------------CCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEE
T ss_pred ccccc-------------------------------ccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEE
Confidence 62100 01223589999999999999999999999999999999999999
Q ss_pred EEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCCCCccceeeceeE
Q 009748 299 HDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITV 378 (527)
Q Consensus 299 ~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v 378 (527)
++++|.++...+|+|||++.+|+||+|+||+|.++||||++|++..||+|+||+|..+|||+|||++..+....|+||+|
T Consensus 129 ~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~ 208 (326)
T PF00295_consen 129 SNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTF 208 (326)
T ss_dssp ESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEE
T ss_pred cceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEE
Confidence 99999998777999999999999999999999999999999999889999999999999999999986554467999999
Q ss_pred eeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEeeeeecCCccccccceEEeeceeeeEeeeeEEe-eee
Q 009748 379 RDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTV-KPV 457 (527)
Q Consensus 379 ~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~~~-~pi 457 (527)
+||+|.++.+|++||+++++.|.|+||+||||+|+++++||.|++.|+....|...+..+.|+||+|+||+++... .++
T Consensus 209 ~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i 288 (326)
T PF00295_consen 209 ENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAI 288 (326)
T ss_dssp EEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEE
T ss_pred EEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEE
Confidence 9999999999999999999999999999999999999999999999988666665667789999999999999765 689
Q ss_pred eeeecCCCceeeeeeeeEeecchhhhhcccCchhhhhccc
Q 009748 458 HFACSDSLPCVDVTLSVIELKPVQERYHMYDPYCWQAFGE 497 (527)
Q Consensus 458 ~i~c~~~~~~~~I~f~nV~v~~~~~~~~~~~~~c~~v~g~ 497 (527)
.+.|++..+|+||+|+||+|+. . .....|+|+...
T Consensus 289 ~i~~~~~~~~~ni~f~nv~i~~-g----~~~~~c~nv~~~ 323 (326)
T PF00295_consen 289 SIDCSPGSPCSNITFENVNITG-G----KKPAQCKNVPSG 323 (326)
T ss_dssp EEE-BTTSSEEEEEEEEEEEES-S----BSESEEBSCCTT
T ss_pred EEEECCcCcEEeEEEEeEEEEc-C----CcCeEEECCCCC
Confidence 9999999999999999999998 2 223679988753
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-41 Score=363.28 Aligned_cols=278 Identities=31% Similarity=0.564 Sum_probs=234.1
Q ss_pred CCCCcceeeecccccCCCCCcchHHHHHHHHhcccceeeeEEecCceeEEEeeeccccccccceEEEEec-c-eEEccCC
Q 009748 104 SHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD-G-TIIAPTG 181 (527)
Q Consensus 104 ~~~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~-G-tl~~~~~ 181 (527)
....+.++|++|||++||.+|++.|||+||++|.+++|++|+||+| +|+.++|.| ||+++|+++ | ||+++.+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~a~Gg~V~lPaG-tylsg~l~L-----KS~~~L~l~egatl~~~~~ 150 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACASAGGGTVLLPAG-TYLSGPLFL-----KSNVTLHLAEGATLLASSN 150 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhhhcCceEEECCc-eeEeeeEEE-----ecccEEEecCCceeeCCCC
Confidence 3467789999999999999999999999999988889999999999 999999999 899999995 7 8999999
Q ss_pred Cccccc-------ceeeeEEeeeeeceE------------------------EeeceEeeCCc----eeeeecCCCCCCC
Q 009748 182 SKDWGK-------GLLWWLDFTKLKGIT------------------------IQGKGIIDGRG----SVWWQDYPYDDPI 226 (527)
Q Consensus 182 ~~~~~~-------~~~~~i~~~~~~nI~------------------------I~G~G~IdG~G----~~ww~~~~~~~~~ 226 (527)
+.+|+. .....++.+...+.. |.|.|+|+|++ ..||...
T Consensus 151 p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~------ 224 (542)
T COG5434 151 PKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGL------ 224 (542)
T ss_pred hhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcc------
Confidence 999973 122234444444444 44444555432 1133220
Q ss_pred CCCccEeEecCCCCCCCCCCCcccccccCCCCC--CCcceEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeec
Q 009748 227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPS--IKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVS 304 (527)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~ 304 (527)
. ... ..... .||..+.+..|+||+++|++|.|++.|.+|+..|++++++|++|.
T Consensus 225 -------------------g-~~~----~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~ 280 (542)
T COG5434 225 -------------------G-AVE----TRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTID 280 (542)
T ss_pred -------------------c-chh----hcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEE
Confidence 0 000 01112 689999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeecccceEEEecccccCCceeEeccC-----------CceeEEeeeccCCCCc-ccccccCCCCccce
Q 009748 305 SPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG-----------CSNVYVHNVNCGPGHG-ISIGSLGKDNTKAC 372 (527)
Q Consensus 305 s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sg-----------s~NV~I~n~~~~~g~G-I~IGs~g~~~~~~~ 372 (527)
+.... |+|||++.+|+||+|++|+|.++||||+++++ ++||.|+||.+..+|| +.+|+| +.+.
T Consensus 281 ~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~gg 355 (542)
T COG5434 281 ANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGG 355 (542)
T ss_pred CCCCC-CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCc
Confidence 97655 99999999999999999999999999999986 6899999999999997 899998 5788
Q ss_pred eeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEe
Q 009748 373 VSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVID 422 (527)
Q Consensus 373 v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~ 422 (527)
|+||++|||.|.++.+|+|||+..++.|.++||+|+++.+.++..++.|.
T Consensus 356 v~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 356 VQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eeEEEEEeeeeccCcceeeeeeecccceeEEEEEEecccccCcccceeee
Confidence 99999999999999999999999999999999999999999987665555
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.91 E-value=1.4e-23 Score=219.56 Aligned_cols=246 Identities=17% Similarity=0.237 Sum_probs=188.6
Q ss_pred CCcceeeecccccCCCCCcchHHHHHHHHhcccceeeeEEecCceeEEEeeeccccccccceEEEEec-ceEEccCCCcc
Q 009748 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD-GTIIAPTGSKD 184 (527)
Q Consensus 106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~-Gtl~~~~~~~~ 184 (527)
+.+.+|+++|||++||.+|+|+|||+||++|. .++++|.||+| +|+.++|.| +++++|.++ |.... .
T Consensus 34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa-~gG~tV~Lp~G-~Y~~G~L~L-----~spltL~G~~gAt~~-----v 101 (455)
T TIGR03808 34 STLGRDATQYGVRPNSPDDQTRALQRAIDEAA-RAQTPLALPPG-VYRTGPLRL-----PSGAQLIGVRGATRL-----V 101 (455)
T ss_pred CccCCCHHHcCcCCCCcchHHHHHHHHHHHhh-cCCCEEEECCC-ceecccEEE-----CCCcEEEecCCcEEE-----E
Confidence 44669999999999999999999999999765 35688999999 999999999 678999887 54210 0
Q ss_pred cccceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcce
Q 009748 185 WGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTA 264 (527)
Q Consensus 185 ~~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~ 264 (527)
+.++ ...+...++++|+|+|. +|+|+|..|- .+|.+
T Consensus 102 IdG~-~~lIiai~A~nVTIsGL-tIdGsG~dl~------------------------------------------~rdAg 137 (455)
T TIGR03808 102 FTGG-PSLLSSEGADGIGLSGL-TLDGGGIPLP------------------------------------------QRRGL 137 (455)
T ss_pred EcCC-ceEEEEecCCCeEEEee-EEEeCCCccc------------------------------------------CCCCE
Confidence 1112 45666778999999997 9999985431 25668
Q ss_pred EEEeeeeeEEEEEEEEecCCcceeeeccee----------------------EEEEEEeeecCCCC--------------
Q 009748 265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCI----------------------GVVVHDVSVSSPGD-------------- 308 (527)
Q Consensus 265 i~~~~~~nv~I~giti~ns~~~~i~~~~c~----------------------nV~I~nv~I~s~~~-------------- 308 (527)
|++..|++++|++++|+++..|+|.+..|+ +++|++.+|....+
T Consensus 138 I~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg 217 (455)
T TIGR03808 138 IHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDG 217 (455)
T ss_pred EEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCc
Confidence 999999999999999999989999999999 77777777775433
Q ss_pred ------------------CCCCCceeeecccceEEEecccccCC-ceeEeccCCceeEEeeeccCCCCcccccccCCCCc
Q 009748 309 ------------------SPNTDGIHLQNSKDVLIHTSNLACGD-DCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNT 369 (527)
Q Consensus 309 ------------------~~ntDGI~i~~s~nV~I~n~~i~~gD-D~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~ 369 (527)
...++||+++.+.+++|++++|+.++ |+|.+.+ ++|+.|++++|..-+=..+-++-
T Consensus 218 ~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhymf---- 292 (455)
T TIGR03808 218 TIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSEF---- 292 (455)
T ss_pred ceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEEE----
Confidence 45678889888889999999998888 8888877 68888888888752111222220
Q ss_pred cceeeceeEeeeeeecceeeeEEeeecc--CcceeeeEEeeeeEeee
Q 009748 370 KACVSNITVRDVMMHNTMNGVRIKTWQG--GSGSVQGVLFSNIQVSE 414 (527)
Q Consensus 370 ~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g--~~G~V~NI~f~Ni~v~~ 414 (527)
..+.-.|+|+++.+...|+.+..+.. +...|++-.++|++-+.
T Consensus 293 --s~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 293 --AFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKR 337 (455)
T ss_pred --eCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCC
Confidence 11224577778888888888887753 34677888888887765
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.83 E-value=1.4e-19 Score=175.76 Aligned_cols=213 Identities=27% Similarity=0.408 Sum_probs=124.8
Q ss_pred ceeeecccccCCCCCcchHHHHHHHHhcccceeeeEEecCceeEEEe-eeccccccccceEEEEecc---eEEccC-CCc
Q 009748 109 VFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVG-PMSFSGPYCQANIIFQLDG---TIIAPT-GSK 183 (527)
Q Consensus 109 ~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~-~l~l~g~~~~sni~l~~~G---tl~~~~-~~~ 183 (527)
.+||++|||++||++|||+|||+||+++...++++||||+| +|++. +|.+ +++++|+++| +++... ...
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~~g~~v~~P~G-~Y~i~~~l~~-----~s~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAAGGGVVYFPPG-TYRISGTLII-----PSNVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCSTTSEEEEE-SE-EEEESS-EEE------TTEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccCCCeEEEEcCc-EEEEeCCeEc-----CCCeEEEccCCCeeEEEecCccc
Confidence 47999999999999999999999996667778999999999 77775 4888 6799999985 344322 222
Q ss_pred ccccceeeeEEeee-eec--eEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCC
Q 009748 184 DWGKGLLWWLDFTK-LKG--ITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSI 260 (527)
Q Consensus 184 ~~~~~~~~~i~~~~-~~n--I~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (527)
.+.. ......+.. ..+ +.|++ -+|++.+...- .
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~------------------------------------------~ 110 (225)
T PF12708_consen 75 SFSV-VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPN------------------------------------------N 110 (225)
T ss_dssp TSCC-EEEEEECCSCSCCEEEEEEE-EEEEETCGCE-------------------------------------------S
T ss_pred cccc-ccceeeeecCCCCceEEEEe-eEEEcccccCC------------------------------------------C
Confidence 2210 011111111 111 12333 33333321100 0
Q ss_pred CcceEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeec-ccceEEEecccccCCceeEe
Q 009748 261 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-SKDVLIHTSNLACGDDCVSI 339 (527)
Q Consensus 261 rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~-s~nV~I~n~~i~~gDD~Iai 339 (527)
....+++..+.++.|+++++.+....++.+..+....+.+..... ++.+.. +.++.+.+|.+..+++++..
T Consensus 111 ~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (225)
T PF12708_consen 111 NNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL 182 (225)
T ss_dssp CEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC
T ss_pred CceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe
Confidence 124677778889999999998877777777755555444332221 233332 34566678877777777433
Q ss_pred ccCCceeEEeeeccCC--CCcccccccCCCCccceeeceeEeeeeeecceeee
Q 009748 340 QTGCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGV 390 (527)
Q Consensus 340 ~sgs~NV~I~n~~~~~--g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi 390 (527)
. ..++.|+||.+.. ..||.+.. -.+++|+|++|.++..|+
T Consensus 183 ~--~~~~~i~n~~~~~~~~~gi~i~~---------~~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 183 G--NNNITISNNTFEGNCGNGINIEG---------GSNIIISNNTIENCDDGI 224 (225)
T ss_dssp E--EEEEEEECEEEESSSSESEEEEE---------CSEEEEEEEEEESSSEEE
T ss_pred e--cceEEEEeEEECCccceeEEEEC---------CeEEEEEeEEEECCccCc
Confidence 2 3677888887765 34666543 123777777777776665
No 11
>PLN02793 Probable polygalacturonase
Probab=99.81 E-value=2.8e-18 Score=183.63 Aligned_cols=220 Identities=20% Similarity=0.298 Sum_probs=168.6
Q ss_pred cceEEEEecceEEccCCCccccc-------c----eeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEe
Q 009748 165 QANIIFQLDGTIIAPTGSKDWGK-------G----LLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLI 233 (527)
Q Consensus 165 ~sni~l~~~Gtl~~~~~~~~~~~-------~----~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~ 233 (527)
.++++|...|+|-.. ....|.. . .-.+|.|.+++|++|+|--+.+..
T Consensus 142 ~~ni~ItG~G~IDG~-G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp--------------------- 199 (443)
T PLN02793 142 VNHLTVEGGGTVNGM-GHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ--------------------- 199 (443)
T ss_pred CceEEEEeceEEECC-CcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---------------------
Confidence 467888888887642 2223321 0 124688899999999883333221
Q ss_pred EecCCCCCCCCCCCcccccccCCCCCCCcceEEEeeeeeEEEEEEEEecC----CcceeeecceeEEEEEEeeecCCCCC
Q 009748 234 IPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNS----PQCHLKFDNCIGVVVHDVSVSSPGDS 309 (527)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns----~~~~i~~~~c~nV~I~nv~I~s~~~~ 309 (527)
-..+++.+|+||+|+|++|.++ ..++|++..|+||+|+|+.|.+
T Consensus 200 ----------------------------~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~---- 247 (443)
T PLN02793 200 ----------------------------QMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT---- 247 (443)
T ss_pred ----------------------------CeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC----
Confidence 1257888999999999999874 3467999999999999999998
Q ss_pred CCCCceeee-cccceEEEecccccCCceeEecc--------CCceeEEeeeccCC-CCcccccccCCCCccceeeceeEe
Q 009748 310 PNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVR 379 (527)
Q Consensus 310 ~ntDGI~i~-~s~nV~I~n~~i~~gDD~Iai~s--------gs~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~ 379 (527)
..|+|.+. +|+||+|+||++..++ +|++++ +.+||+|+||++.. ..|++|++.. +..+.++||+|+
T Consensus 248 -gDDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~--g~~G~v~nItf~ 323 (443)
T PLN02793 248 -GDDCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ--GGSGNASKITFQ 323 (443)
T ss_pred -CCCeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC--CCCEEEEEEEEE
Confidence 56899996 7999999999998776 699987 26899999999987 5799999863 234789999999
Q ss_pred eeeeecceeeeEEeeeccC----------cceeeeEEeeeeEeeee-eecEEEeeeeecCCccccccceEEeeceeeeEe
Q 009748 380 DVMMHNTMNGVRIKTWQGG----------SGSVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSGITYERV 448 (527)
Q Consensus 380 Ni~i~~~~~Gi~Ikt~~g~----------~G~V~NI~f~Ni~v~~v-~~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI 448 (527)
|++|.+..++|.|...... ...|+||+|+||+.+.. +.++.+.. .+..+++||+|+||
T Consensus 324 ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~c-----------s~~~pc~ni~l~nI 392 (443)
T PLN02793 324 NIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFAC-----------SDSSPCEGLYLEDV 392 (443)
T ss_pred eEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEe-----------CCCCCEeeEEEEee
Confidence 9999999999999876421 13589999999998764 34565542 13457999999999
Q ss_pred eeeEE
Q 009748 449 KGTYT 453 (527)
Q Consensus 449 ~gt~~ 453 (527)
+++..
T Consensus 393 ~l~~~ 397 (443)
T PLN02793 393 QLLSS 397 (443)
T ss_pred EEEec
Confidence 98743
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.79 E-value=8.1e-18 Score=179.42 Aligned_cols=170 Identities=20% Similarity=0.287 Sum_probs=138.5
Q ss_pred eEEEeeeeeEEEEEEEEecC----CcceeeecceeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeE
Q 009748 264 ALRFYGSFNVTVTGITIQNS----PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS 338 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns----~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Ia 338 (527)
.+++.+|+||+|+|++|.++ ..++|++.+|+||+|+|+.|.+ ..|.|.+. +|+||+|+||++..++ +|+
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~GH-Gis 290 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPGH-GIS 290 (431)
T ss_pred EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECCC-CEE
Confidence 57899999999999999863 2467999999999999999998 45889987 4789999999998765 699
Q ss_pred eccC--------CceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeecc---------Ccc
Q 009748 339 IQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQG---------GSG 400 (527)
Q Consensus 339 i~sg--------s~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g---------~~G 400 (527)
+++. .+||+|+||++.. ..|++|++.. +..+.++||+|+|++|.+..++|.|..... ...
T Consensus 291 IGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~--Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v 368 (431)
T PLN02218 291 IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ--GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAV 368 (431)
T ss_pred ECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC--CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCe
Confidence 9872 5799999999987 5699999863 235789999999999999999999886532 124
Q ss_pred eeeeEEeeeeEeeee-eecEEEeeeeecCCccccccceEEeeceeeeEeeeeE
Q 009748 401 SVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTY 452 (527)
Q Consensus 401 ~V~NI~f~Ni~v~~v-~~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~ 452 (527)
.|+||+|+||+.+.. +.++.+. |. +..+++||+|+||.++.
T Consensus 369 ~I~nI~~~NI~gtsa~~~ai~l~---cs--------~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 369 QVKNVVYRNISGTSASDVAITFN---CS--------KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred EEEEEEEEeEEEEecCCcEEEEE---EC--------CCCCEeeEEEEeEEEEC
Confidence 589999999998754 3445443 22 34579999999999874
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.79 E-value=1.2e-17 Score=176.99 Aligned_cols=173 Identities=18% Similarity=0.326 Sum_probs=139.6
Q ss_pred eEEEeeeeeEEEEEEEEecCC----cceeeecceeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeE
Q 009748 264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS 338 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~----~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Ia 338 (527)
.+++.+|+||+|++++|.++. .++|++..|++|+|+|+.|.+ ..|+|.+. +++||+|+||.+..++ +|+
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~gh-Gis 253 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPGH-GIS 253 (404)
T ss_pred EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCCC-cEE
Confidence 578899999999999998642 467999999999999999998 46899996 5789999999997774 699
Q ss_pred ecc--------CCceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeecc----------Cc
Q 009748 339 IQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQG----------GS 399 (527)
Q Consensus 339 i~s--------gs~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g----------~~ 399 (527)
+++ +.+||+|+||++.. .+|++|++.......+.++||+|+|++|.+..++|.|..... ..
T Consensus 254 iGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~ 333 (404)
T PLN02188 254 VGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSG 333 (404)
T ss_pred eCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCC
Confidence 877 26999999999988 569999885332234789999999999999999999876321 12
Q ss_pred ceeeeEEeeeeEeeee-eecEEEeeeeecCCccccccceEEeeceeeeEeeeeEE
Q 009748 400 GSVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYT 453 (527)
Q Consensus 400 G~V~NI~f~Ni~v~~v-~~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~~ 453 (527)
..|+||+|+||+.+.. +.++.+. |. +..+++||+|+||+++..
T Consensus 334 v~I~nIt~~nI~gt~~~~~a~~l~---cs--------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 334 VTLSDIYFKNIRGTSSSQVAVLLK---CS--------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred cEEEeEEEEEEEEEecCceEEEEE---EC--------CCCCEeeEEEEeeEEEec
Confidence 5689999999998764 3355443 21 345799999999998754
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.78 E-value=1.2e-17 Score=178.09 Aligned_cols=229 Identities=20% Similarity=0.271 Sum_probs=171.2
Q ss_pred cceEEEEecceEEccCCCccccc--ceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCC
Q 009748 165 QANIIFQLDGTIIAPTGSKDWGK--GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLP 242 (527)
Q Consensus 165 ~sni~l~~~Gtl~~~~~~~~~~~--~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (527)
..+++|...|+|-.. ....|.. ..-..+.|.+++|+.|+|--.++..
T Consensus 112 ~~~i~I~G~GtIDGq-G~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp------------------------------ 160 (456)
T PLN03003 112 IEGLVIEGDGEINGQ-GSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP------------------------------ 160 (456)
T ss_pred ccceEEeccceEeCC-chhhhhcccCCceEEEEEecCCcEEeCeEEecCC------------------------------
Confidence 467888888887642 2333431 1234678999999999982222111
Q ss_pred CCCCCcccccccCCCCCCCcceEEEeeeeeEEEEEEEEecCC----cceeeecceeEEEEEEeeecCCCCCCCCCceeee
Q 009748 243 YKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ 318 (527)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns~----~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~ 318 (527)
-..+++.+|+||+|++++|.++. .++|++..|+||+|+|+.|.+ .+|+|.+.
T Consensus 161 -------------------~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaik 216 (456)
T PLN03003 161 -------------------MAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAIN 216 (456)
T ss_pred -------------------cEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeC
Confidence 12578899999999999999742 467999999999999999998 46899987
Q ss_pred -cccceEEEecccccCCceeEeccC--------CceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeeccee
Q 009748 319 -NSKDVLIHTSNLACGDDCVSIQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN 388 (527)
Q Consensus 319 -~s~nV~I~n~~i~~gDD~Iai~sg--------s~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~ 388 (527)
+|+||+|+||++..++ +|++++- .+||+|+||++.+ .+|++|++... ..+.++||+|+|++|.+..+
T Consensus 217 sgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV~~ 293 (456)
T PLN03003 217 SGTSNIHISGIDCGPGH-GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNVEN 293 (456)
T ss_pred CCCccEEEEeeEEECCC-CeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC--CCeEEEEEEEEeEEecCccc
Confidence 4789999999998765 7999872 6999999999988 56999998632 34689999999999999999
Q ss_pred eeEEeeeccC------------cceeeeEEeeeeEeeee-eecEEEeeeeecCCccccccceEEeeceeeeEeeeeEEe-
Q 009748 389 GVRIKTWQGG------------SGSVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYTV- 454 (527)
Q Consensus 389 Gi~Ikt~~g~------------~G~V~NI~f~Ni~v~~v-~~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~~~- 454 (527)
+|.|...... ...|+||+|+||+.+.. +.++.+. | .+..+.+||+|+||.++...
T Consensus 294 pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~---C--------s~~~PC~nI~l~ni~l~~~~~ 362 (456)
T PLN03003 294 PIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFR---C--------SERVPCTEIFLRDMKIETASS 362 (456)
T ss_pred eEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEE---e--------CCCCCeeeEEEEEEEEEecCC
Confidence 9998765421 13689999999997543 4566554 2 23457899999999988541
Q ss_pred ---eeeeeeec
Q 009748 455 ---KPVHFACS 462 (527)
Q Consensus 455 ---~pi~i~c~ 462 (527)
.+....|.
T Consensus 363 g~~~~~~~~C~ 373 (456)
T PLN03003 363 GSGQVAQGQCL 373 (456)
T ss_pred CCCCccCcEEe
Confidence 22445565
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.77 E-value=1.5e-17 Score=172.54 Aligned_cols=170 Identities=25% Similarity=0.324 Sum_probs=138.4
Q ss_pred eEEEeeeeeEEEEEEEEecCCc----ceeeecceeEEEEEEeeecCCCCCCCCCceeeeccc-ceEEEecccccCCceeE
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQ----CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK-DVLIHTSNLACGDDCVS 338 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~----~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~-nV~I~n~~i~~gDD~Ia 338 (527)
.+++.+|+||+|++++|.++.. ++|++..|+||+|+|+.|.+ ..|+|.+.+.. ||+|+||++..+. +++
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~gh-Gis 190 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGGH-GIS 190 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESSS-EEE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEeccc-cce
Confidence 4788999999999999997643 57999999999999999998 56899998655 9999999998765 588
Q ss_pred ecc---C-----CceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeecc---------Ccc
Q 009748 339 IQT---G-----CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQG---------GSG 400 (527)
Q Consensus 339 i~s---g-----s~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g---------~~G 400 (527)
+++ + .+||+|+||++.. .+|+.|++.- +..+.|+||+|+|++|.+..+++.|..... ...
T Consensus 191 iGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~ 268 (326)
T PF00295_consen 191 IGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGV 268 (326)
T ss_dssp EEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSS
T ss_pred eeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCc
Confidence 876 2 4799999999987 5689998752 245789999999999999999999876522 124
Q ss_pred eeeeEEeeeeEeeeee-ecEEEeeeeecCCccccccceEEeeceeeeEeeeeE
Q 009748 401 SVQGVLFSNIQVSEVQ-LPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTY 452 (527)
Q Consensus 401 ~V~NI~f~Ni~v~~v~-~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~ 452 (527)
.|+||+|+||+.+... .++.+.. . +..+++||+|+||.++.
T Consensus 269 ~i~nI~~~nitg~~~~~~~i~i~~---~--------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 269 SISNITFRNITGTSAGSSAISIDC---S--------PGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEEEEEEEESTSEEEEEE----B--------TTSSEEEEEEEEEEEES
T ss_pred eEEEEEEEeeEEEeccceEEEEEE---C--------CcCcEEeEEEEeEEEEc
Confidence 7999999999998765 5666653 1 23469999999999885
No 16
>PLN02155 polygalacturonase
Probab=99.76 E-value=3e-17 Score=173.21 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=139.2
Q ss_pred eEEEeeeeeEEEEEEEEecCC----cceeeecceeEEEEEEeeecCCCCCCCCCceeeec-ccceEEEecccccCCceeE
Q 009748 264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-SKDVLIHTSNLACGDDCVS 338 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~----~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~-s~nV~I~n~~i~~gDD~Ia 338 (527)
.+++.+|+||+|++++|.++. .++|++..|+||+|+|+.|.+ ..|+|.+.+ |+||+|+||.+..++ +|+
T Consensus 170 ~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-Gis 243 (394)
T PLN02155 170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVS 243 (394)
T ss_pred EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEE
Confidence 678899999999999998743 367999999999999999998 568899874 789999999998775 699
Q ss_pred eccC--------CceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccC----------c
Q 009748 339 IQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGG----------S 399 (527)
Q Consensus 339 i~sg--------s~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~----------~ 399 (527)
+++- .+||+|+||++.. .+|++|++..+ ...+.|+||+|+|++|.+..++|.|...... .
T Consensus 244 IGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~ 322 (394)
T PLN02155 244 IGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSG 322 (394)
T ss_pred eccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCC
Confidence 9872 5999999999987 56999998421 1357899999999999999999999764311 1
Q ss_pred ceeeeEEeeeeEeeee-eecEEEeeeeecCCccccccceEEeeceeeeEeeeeEE
Q 009748 400 GSVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYT 453 (527)
Q Consensus 400 G~V~NI~f~Ni~v~~v-~~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~~ 453 (527)
..|+||+|+||+.+.. ..++.+.. . +..+++||+|+||+++..
T Consensus 323 v~i~~It~~ni~gt~~~~~a~~l~c---~--------~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 323 VKISQVTYKNIQGTSATQEAMKLVC---S--------KSSPCTGITLQDIKLTYN 366 (394)
T ss_pred eEEEEEEEEeeEEEecCCceEEEEe---C--------CCCCEEEEEEEeeEEEec
Confidence 3689999999999865 34555542 1 345689999999998854
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.74 E-value=2.1e-16 Score=167.10 Aligned_cols=281 Identities=17% Similarity=0.207 Sum_probs=155.9
Q ss_pred eeEEecCceeEEEee---eccccccccce-EEEEec-ceEEccCCCcccccceeeeEEeeeeeceEEeeceEeeCCceee
Q 009748 142 SIMVVPAESVFLVGP---MSFSGPYCQAN-IIFQLD-GTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVW 216 (527)
Q Consensus 142 ~~V~iP~G~~yl~~~---l~l~g~~~~sn-i~l~~~-Gtl~~~~~~~~~~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~w 216 (527)
.+|||++| +|-++. +.| .+| -.++++ |+++.. ++......+|+.|.|.|++.|....|
T Consensus 233 ~~lYF~PG-Vy~ig~~~~l~L-----~sn~~~VYlApGAyVkG-----------Af~~~~~~~nv~i~G~GVLSGe~Yvy 295 (582)
T PF03718_consen 233 DTLYFKPG-VYWIGSDYHLRL-----PSNTKWVYLAPGAYVKG-----------AFEYTDTQQNVKITGRGVLSGEQYVY 295 (582)
T ss_dssp SEEEE-SE-EEEEBCTC-EEE------TT--EEEE-TTEEEES------------EEE---SSEEEEESSSEEE-TTS-T
T ss_pred ceEEeCCc-eEEeCCCccEEE-----CCCccEEEEcCCcEEEE-----------EEEEccCCceEEEEeeEEEcCcceeE
Confidence 58999999 777765 666 445 577877 765531 22233578999999999999987654
Q ss_pred eecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcceEE---EeeeeeEEEEEEEEecCCcceeeecc-
Q 009748 217 WQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALR---FYGSFNVTVTGITIQNSPQCHLKFDN- 292 (527)
Q Consensus 217 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~---~~~~~nv~I~giti~ns~~~~i~~~~- 292 (527)
-.. +...-.+ .....+.+...=+++. ...+.+++++|++|.++|+|.+.+..
T Consensus 296 ~A~-----~~e~y~~-------------------~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~ 351 (582)
T PF03718_consen 296 EAD-----TEESYLH-------------------LSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGN 351 (582)
T ss_dssp TBB-----CCCTTSB--------------------SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESS
T ss_pred ecc-----CCCCccc-------------------cccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCC
Confidence 221 1100000 0001122222223343 44577999999999999999999984
Q ss_pred ee---EEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCceeEEeeeccCCCC-c--ccccccCC
Q 009748 293 CI---GVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH-G--ISIGSLGK 366 (527)
Q Consensus 293 c~---nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~-G--I~IGs~g~ 366 (527)
|+ +..|+|.++...+ ..++|||.+. ++-+|+||+++..||+|.+.. +++.|+||+++..+ | |.+|.
T Consensus 352 ~~~~~~~~i~nyKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW--- 423 (582)
T PF03718_consen 352 ENDKFSMNISNYKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGW--- 423 (582)
T ss_dssp SGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--C---
T ss_pred ccccccceeeceeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeec---
Confidence 43 6899999999764 4799999997 577889999999999997776 79999999999843 3 66654
Q ss_pred CCccceeeceeEeeeeeecce---------eeeEEeeecc----------CcceeeeEEeeeeEeeeeee-cEEEeeeee
Q 009748 367 DNTKACVSNITVRDVMMHNTM---------NGVRIKTWQG----------GSGSVQGVLFSNIQVSEVQL-PIVIDQFYC 426 (527)
Q Consensus 367 ~~~~~~v~nI~v~Ni~i~~~~---------~Gi~Ikt~~g----------~~G~V~NI~f~Ni~v~~v~~-pi~I~~~y~ 426 (527)
+...++||+|+|+.+..+. .+|.-.+... ..-.|++++|+|+++++.-. .+.|..+-
T Consensus 424 --~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq- 500 (582)
T PF03718_consen 424 --TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ- 500 (582)
T ss_dssp --S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE-
T ss_pred --cccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC-
Confidence 3456999999999998762 3443322111 11368999999999998654 34554321
Q ss_pred cCCccccccceEEeeceeeeEeeeeE---Ee--eeeeeee--cCCCceeeeeeeeEeecchh
Q 009748 427 DKSTCKNQTSAVALSGITYERVKGTY---TV--KPVHFAC--SDSLPCVDVTLSVIELKPVQ 481 (527)
Q Consensus 427 ~~~~~~~~~~~~~i~nItf~NI~gt~---~~--~pi~i~c--~~~~~~~~I~f~nV~v~~~~ 481 (527)
......|+|+.|+...+.. .. .+....+ .......+|.|+|.+|.+++
T Consensus 501 -------n~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 501 -------NYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp -------EEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred -------CCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 1234567777777443321 00 0111111 11345789999999998876
No 18
>PLN03010 polygalacturonase
Probab=99.74 E-value=2.2e-16 Score=167.09 Aligned_cols=215 Identities=17% Similarity=0.235 Sum_probs=163.3
Q ss_pred cceEEEEecceEEccCCCcccccceeeeEEeeeeeceEEeeceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCC
Q 009748 165 QANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYK 244 (527)
Q Consensus 165 ~sni~l~~~Gtl~~~~~~~~~~~~~~~~i~~~~~~nI~I~G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (527)
.+++.|...|+|-... ..|- .++.+.+++|+.|+|--.++..
T Consensus 138 v~nv~I~G~G~IDG~G--~~ww----~~l~~~~~~nv~v~gitl~nsp-------------------------------- 179 (409)
T PLN03010 138 VSGLMIDGSGTIDGRG--SSFW----EALHISKCDNLTINGITSIDSP-------------------------------- 179 (409)
T ss_pred ccccEEeeceEEeCCC--cccc----ceEEEEeecCeEEeeeEEEcCC--------------------------------
Confidence 4688888888886421 2221 1488999999999982222211
Q ss_pred CCCcccccccCCCCCCCcceEEEeeeeeEEEEEEEEecCC----cceeeecceeEEEEEEeeecCCCCCCCCCceeeec-
Q 009748 245 PPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN- 319 (527)
Q Consensus 245 ~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns~----~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~- 319 (527)
-..+++.+|++|+|++++|.++. .++|++..|++|+|+|+.|.+ ..|+|.+.+
T Consensus 180 -----------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDDcIaiksg 237 (409)
T PLN03010 180 -----------------KNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQT-----GDDCIAINSG 237 (409)
T ss_pred -----------------ceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEec-----CCCeEEecCC
Confidence 02578889999999999999743 367999999999999999998 458999874
Q ss_pred ccceEEEecccccCCceeEeccC--------CceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeecceeee
Q 009748 320 SKDVLIHTSNLACGDDCVSIQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGV 390 (527)
Q Consensus 320 s~nV~I~n~~i~~gDD~Iai~sg--------s~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi 390 (527)
+.++.|+++....++ +|++++- .+||+|+||++.. .+|++|++.. +..+.++||+|+|++|.+..++|
T Consensus 238 s~ni~I~~~~C~~gH-GisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~--G~~G~v~nItf~nI~m~~v~~pI 314 (409)
T PLN03010 238 SSNINITQINCGPGH-GISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQ--GGQGYARNISFENITLINTKNPI 314 (409)
T ss_pred CCcEEEEEEEeECcC-CEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEec--CCCEEEEEeEEEeEEEecCCccE
Confidence 468888888876554 7999872 6999999999988 4699999863 23578999999999999999999
Q ss_pred EEeeeccC----------cceeeeEEeeeeEeeee-eecEEEeeeeecCCccccccceEEeeceeeeEeeeeEE
Q 009748 391 RIKTWQGG----------SGSVQGVLFSNIQVSEV-QLPIVIDQFYCDKSTCKNQTSAVALSGITYERVKGTYT 453 (527)
Q Consensus 391 ~Ikt~~g~----------~G~V~NI~f~Ni~v~~v-~~pi~I~~~y~~~~~~~~~~~~~~i~nItf~NI~gt~~ 453 (527)
.|...... ...|+||+|+||+-+.. +.++.+. |. ...+.+||+|+||.++..
T Consensus 315 ~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~---Cs--------~~~pC~ni~~~~v~l~~~ 377 (409)
T PLN03010 315 IIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLK---CS--------AITHCKDVVMDDIDVTME 377 (409)
T ss_pred EEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEE---eC--------CCCCEeceEEEEEEEEec
Confidence 99876432 12689999999998643 3455553 21 335689999999998854
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.51 E-value=3e-13 Score=139.62 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=97.5
Q ss_pred eeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCC---CCCCCceeeecccceEEEecccccC-CceeEeccCC
Q 009748 268 YGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD---SPNTDGIHLQNSKDVLIHTSNLACG-DDCVSIQTGC 343 (527)
Q Consensus 268 ~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~---~~ntDGI~i~~s~nV~I~n~~i~~g-DD~Iai~sgs 343 (527)
..+++|+|+|+++.++..++|.+..|++++|+++++..... ....+||.+..|++++|++|+++.. |++|.++. +
T Consensus 60 v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s 138 (314)
T TIGR03805 60 VTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-S 138 (314)
T ss_pred EEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-C
Confidence 45788889999988888888888888888899888863211 1346788888888999999998875 44788765 6
Q ss_pred ceeEEeeeccCCC-CcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCc-ceeeeEEeeeeEeee
Q 009748 344 SNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGS-GSVQGVLFSNIQVSE 414 (527)
Q Consensus 344 ~NV~I~n~~~~~g-~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~-G~V~NI~f~Ni~v~~ 414 (527)
+++.|+||+++.. .||.+.. ..++.|+|+++.+...|+.+-..++.. ..-+++++++.++.+
T Consensus 139 ~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 139 QNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred CCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC
Confidence 8888888888764 3666632 356778888888777788775443321 123566666665543
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=2.2e-10 Score=124.39 Aligned_cols=154 Identities=15% Similarity=0.206 Sum_probs=124.8
Q ss_pred CcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCc----eeEeccCCceeEEeeeccCCCC-c
Q 009748 284 PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD----CVSIQTGCSNVYVHNVNCGPGH-G 358 (527)
Q Consensus 284 ~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD----~Iai~sgs~NV~I~n~~~~~g~-G 358 (527)
...++.+..|+||++++++|.++.. -++|+..|+|++++|.+|.+.++ ++.+.+ |+||+|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 3457899999999999999998642 57999999999999999987554 888877 999999999998865 5
Q ss_pred ccccccCCCC---ccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeeeeecEEEeeeeecCCcccccc
Q 009748 359 ISIGSLGKDN---TKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQT 435 (527)
Q Consensus 359 I~IGs~g~~~---~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~pi~I~~~y~~~~~~~~~~ 435 (527)
|.|++-.... -.+.-++|+|+||.|.....++.+.++.+ |.|+||++||+.|.+...++.|+... .
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~--ggv~ni~ved~~~~~~d~GLRikt~~---------~ 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG--GGVQNITVEDCVMDNTDRGLRIKTND---------G 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeeecC--CceeEEEEEeeeeccCcceeeeeeec---------c
Confidence 8887743221 11334999999999997777788878755 59999999999999999999998753 2
Q ss_pred ceEEeeceeeeEeeeeEE
Q 009748 436 SAVALSGITYERVKGTYT 453 (527)
Q Consensus 436 ~~~~i~nItf~NI~gt~~ 453 (527)
.++.++||+|+++.+...
T Consensus 381 ~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred cceeEEEEEEecccccCc
Confidence 347899999998876654
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.66 E-value=1.9e-06 Score=89.23 Aligned_cols=228 Identities=18% Similarity=0.239 Sum_probs=156.7
Q ss_pred HHHHHHhcccceeeeEEecCceeEEE-eeeccccccccceEEEEecc---eEEccCCCcccccceeeeEEeeeeeceEEe
Q 009748 129 FEAAWAAACKVEASIMVVPAESVFLV-GPMSFSGPYCQANIIFQLDG---TIIAPTGSKDWGKGLLWWLDFTKLKGITIQ 204 (527)
Q Consensus 129 iq~Ai~~a~~~gg~~V~iP~G~~yl~-~~l~l~g~~~~sni~l~~~G---tl~~~~~~~~~~~~~~~~i~~~~~~nI~I~ 204 (527)
||+|+++|.. |++|+||+| +|.. ++|.+. +++++|+.+| +++-...... + ..-+ ...+++|+|+
T Consensus 1 iQ~Ai~~A~~--GDtI~l~~G-~Y~~~~~l~I~----~~~Iti~G~g~~~tvid~~~~~~---~-~~~i-~v~a~~VtI~ 68 (314)
T TIGR03805 1 LQEALIAAQP--GDTIVLPEG-VFQFDRTLSLD----ADGVTIRGAGMDETILDFSGQVG---G-AEGL-LVTSDDVTLS 68 (314)
T ss_pred CHhHHhhCCC--CCEEEECCC-EEEcceeEEEe----CCCeEEEecCCCccEEecccCCC---C-CceE-EEEeCCeEEE
Confidence 6899987654 799999999 7864 788885 3689998875 5553222110 0 1112 2246777887
Q ss_pred eceEeeCCceeeeecCCCCCCCCCCccEeEecCCCCCCCCCCCcccccccCCCCCCCcceEEEeeeeeEEEEEEEEe---
Q 009748 205 GKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQ--- 281 (527)
Q Consensus 205 G~G~IdG~G~~ww~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~I~giti~--- 281 (527)
|-.+. .. . ..+|.+.+|++++|+++++.
T Consensus 69 ~ltI~-~~------~------------------------------------------~~GI~v~~s~~i~I~n~~i~~~~ 99 (314)
T TIGR03805 69 DLAVE-NT------K------------------------------------------GDGVKVKGSDGIIIRRLRVEWTG 99 (314)
T ss_pred eeEEE-cC------C------------------------------------------CCeEEEeCCCCEEEEeeEEEecc
Confidence 73221 10 0 12567788999999999997
Q ss_pred ----cCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCceeEEeeeccCC-C
Q 009748 282 ----NSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP-G 356 (527)
Q Consensus 282 ----ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~-g 356 (527)
....++|.+..|++++|+++.+... ..+||.+..|++++|++|++.....||.+.. +.++.|+++.+.. .
T Consensus 100 ~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~ 174 (314)
T TIGR03805 100 GPKSSNGAYGIYPVESTNVLVEDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNT 174 (314)
T ss_pred CccccCCcceEEEeccCCEEEECCEEECC----CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccc
Confidence 1346889999999999999999873 3359999999999999999999989998875 7899999999877 4
Q ss_pred CcccccccCCCCccceeeceeEeeeeeeccee------eeEEeeeccCccee----eeEEeeeeEeeeeee-cEEEee
Q 009748 357 HGISIGSLGKDNTKACVSNITVRDVMMHNTMN------GVRIKTWQGGSGSV----QGVLFSNIQVSEVQL-PIVIDQ 423 (527)
Q Consensus 357 ~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~------Gi~Ikt~~g~~G~V----~NI~f~Ni~v~~v~~-pi~I~~ 423 (527)
.||.+..+... .....+++.|+++++.+... |-.+...+.+.|.+ ++++++|.++.+... +|.+..
T Consensus 175 ~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 175 GGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred eeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 57777433111 01234788888888876521 11122223344544 889999999887654 455543
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.49 E-value=7.1e-07 Score=81.11 Aligned_cols=139 Identities=20% Similarity=0.302 Sum_probs=97.5
Q ss_pred eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs 343 (527)
+|.+....+++|++++|.+....+|.+..+..++|++++|.. ...||.+....++.|++|.+.....++.+. ..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 467788899999999999999999999999999999999997 557999999899999999999877677776 57
Q ss_pred ceeEEeeeccCCC--CcccccccCCCCccceeeceeEeeeeeecce-eeeEEeeeccCcceeeeEEeeeeEeeeee-ecE
Q 009748 344 SNVYVHNVNCGPG--HGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQGGSGSVQGVLFSNIQVSEVQ-LPI 419 (527)
Q Consensus 344 ~NV~I~n~~~~~g--~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~-~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~-~pi 419 (527)
.+++|++|.+... .||.+.. ...+++|++++|.+.. .|+.+.... -.++++++.++.+.. .+|
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi 142 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGI 142 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeE
Confidence 9999999999873 3677642 2467999999999876 788876643 235556666665543 455
Q ss_pred EE
Q 009748 420 VI 421 (527)
Q Consensus 420 ~I 421 (527)
.+
T Consensus 143 ~~ 144 (158)
T PF13229_consen 143 YL 144 (158)
T ss_dssp E-
T ss_pred EE
Confidence 43
No 23
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.37 E-value=9.8e-06 Score=86.16 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=92.8
Q ss_pred eEEEeeeeeEEEEEEEEecCCc------ceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccc-cCCce
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQ------CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLA-CGDDC 336 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~------~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~-~gDD~ 336 (527)
++.-...++|+|+|++|.++.. ..|++..|++++|+|++|.... .-||.+..|+ ..|.+++|. ..+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 4556778999999999998763 3589999999999999999742 2477777776 444444443 33444
Q ss_pred eEeccCCceeEEeeeccCCC--Cccccccc------------------------CCCCccc---eeeceeEeeeeeecce
Q 009748 337 VSIQTGCSNVYVHNVNCGPG--HGISIGSL------------------------GKDNTKA---CVSNITVRDVMMHNTM 387 (527)
Q Consensus 337 Iai~sgs~NV~I~n~~~~~g--~GI~IGs~------------------------g~~~~~~---~v~nI~v~Ni~i~~~~ 387 (527)
|.+.. ++++.|+++++... .||.|--. +.++.+- ...+++|+++++.++.
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 44433 45666666655542 23333211 1111111 1368899999999998
Q ss_pred -eeeEEeeeccCcceeeeEEeeeeEeeeeee-cEEE
Q 009748 388 -NGVRIKTWQGGSGSVQGVLFSNIQVSEVQL-PIVI 421 (527)
Q Consensus 388 -~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~-pi~I 421 (527)
.|+++.+- +|+.|++.+++++.+ +++.
T Consensus 262 ~dgI~~nss-------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 262 YSAVRGNSA-------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred cceEEEEcc-------cCcEEECcEeeeeeeeEEEE
Confidence 88887553 566666666666666 5543
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.32 E-value=1.7e-06 Score=85.45 Aligned_cols=123 Identities=21% Similarity=0.303 Sum_probs=69.7
Q ss_pred EEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCC-----CCcee------eecccceEEEecccccCC
Q 009748 266 RFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPN-----TDGIH------LQNSKDVLIHTSNLACGD 334 (527)
Q Consensus 266 ~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~n-----tDGI~------i~~s~nV~I~n~~i~~gD 334 (527)
.|..|+++++++++|-|++.. +..|+++.++|+.+.+....-+ -||+. +++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 466788899999988877642 3367888888888854321111 12222 234666666666666554
Q ss_pred ceeEeccCCceeEEeeeccCCCCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeee
Q 009748 335 DCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSE 414 (527)
Q Consensus 335 D~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~ 414 (527)
++-. ++||+|.+..+.+.- +.+ .-+||++.||++.+. +|+ =+++|++++|.+|.+
T Consensus 170 ---AFWn-~eNVtVyDS~i~GEY-LgW----------~SkNltliNC~I~g~-QpL---------CY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 170 ---AFWN-CENVTVYDSVINGEY-LGW----------NSKNLTLINCTIEGT-QPL---------CYCDNLVLENCTMID 224 (277)
T ss_pred ---cccc-CCceEEEcceEeeeE-EEE----------EcCCeEEEEeEEecc-Ccc---------EeecceEEeCcEeec
Confidence 1222 566666666654200 111 135666777766654 222 266777777777765
Q ss_pred ee
Q 009748 415 VQ 416 (527)
Q Consensus 415 v~ 416 (527)
.+
T Consensus 225 td 226 (277)
T PF12541_consen 225 TD 226 (277)
T ss_pred ce
Confidence 43
No 25
>smart00656 Amb_all Amb_all domain.
Probab=98.21 E-value=1.7e-05 Score=76.34 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=78.7
Q ss_pred eeecceeEEEEEEeeecCCCC--CCCCCceeeecccceEEEecccccC----------CceeEeccCCceeEEeeeccCC
Q 009748 288 LKFDNCIGVVVHDVSVSSPGD--SPNTDGIHLQNSKDVLIHTSNLACG----------DDCVSIQTGCSNVYVHNVNCGP 355 (527)
Q Consensus 288 i~~~~c~nV~I~nv~I~s~~~--~~ntDGI~i~~s~nV~I~n~~i~~g----------DD~Iai~sgs~NV~I~n~~~~~ 355 (527)
+.+..++||.|+|++|..... ..+.|+|.+..+++|+|++|++..+ |..+.++.++.+|+|.+|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 333345566666666665322 2467999999999999999999986 4556788889999999999976
Q ss_pred CC-cccccccCCCCccceeeceeEeeeeeecce-eeeEEeeeccCcceeeeEEeeeeE
Q 009748 356 GH-GISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQGGSGSVQGVLFSNIQ 411 (527)
Q Consensus 356 g~-GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~-~Gi~Ikt~~g~~G~V~NI~f~Ni~ 411 (527)
.+ ++-||+.-. .+.....+|++.++.+.++. +..+++. +...+-|-.|+|..
T Consensus 114 h~~~~liG~~d~-~~~~~~~~vT~h~N~~~~~~~R~P~~r~---g~~hv~NN~~~n~~ 167 (190)
T smart00656 114 HWKVMLLGHSDS-DTDDGKMRVTIAHNYFGNLRQRAPRVRF---GYVHVYNNYYTGWT 167 (190)
T ss_pred CCEEEEEccCCC-ccccccceEEEECcEEcCcccCCCcccC---CEEEEEeeEEeCcc
Confidence 33 677776311 11222457999999887652 3344421 22344455555543
No 26
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.18 E-value=8.5e-06 Score=80.58 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=65.4
Q ss_pred eeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCCC
Q 009748 288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKD 367 (527)
Q Consensus 288 i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~ 367 (527)
-.|+.|+||.|+|.++.+.+ .++.|+||+|.|++|..- -++. .++|+++.||++.+..|+.
T Consensus 150 Y~Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~i~GE--YLgW--~SkNltliNC~I~g~QpLC------- 210 (277)
T PF12541_consen 150 YSFQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSVINGE--YLGW--NSKNLTLINCTIEGTQPLC------- 210 (277)
T ss_pred EEeeceeeEEEEccEEeccc--------ccccCCceEEEcceEeee--EEEE--EcCCeEEEEeEEeccCccE-------
Confidence 45789999999999999864 246699999999999742 2333 3699999999998766665
Q ss_pred CccceeeceeEeeeeeecceeeeEE
Q 009748 368 NTKACVSNITVRDVMMHNTMNGVRI 392 (527)
Q Consensus 368 ~~~~~v~nI~v~Ni~i~~~~~Gi~I 392 (527)
+++|++.+||+|.+++.++.-
T Consensus 211 ----Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 211 ----YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred ----eecceEEeCcEeecceeeeee
Confidence 378999999999988766654
No 27
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=4.5e-05 Score=76.79 Aligned_cols=119 Identities=21% Similarity=0.311 Sum_probs=76.3
Q ss_pred EEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceee-ecccceEEEeccccc---------CC
Q 009748 265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHL-QNSKDVLIHTSNLAC---------GD 334 (527)
Q Consensus 265 i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i-~~s~nV~I~n~~i~~---------gD 334 (527)
|.+....||.|+||+|+...+| + ++-|+|.+ ..++||+|++|++.. +|
T Consensus 119 l~i~~a~NVIirNltf~~~~~~---------------------d-~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~D 176 (345)
T COG3866 119 LKIRDAGNVIIRNLTFEGFYQG---------------------D-PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGD 176 (345)
T ss_pred EEEEeCCcEEEEeeEEEeeccC---------------------C-CCCCcEEeccCCeEEEEEeeEeccccccccccCCC
Confidence 3444566677776666654322 1 23577777 677888888888875 45
Q ss_pred ceeEeccCCceeEEeeeccCCC-CcccccccCCCCccceeeceeEeeeeeecce-eeeEEeeeccCcceeeeEEee
Q 009748 335 DCVSIQTGCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQGGSGSVQGVLFS 408 (527)
Q Consensus 335 D~Iai~sgs~NV~I~n~~~~~g-~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~-~Gi~Ikt~~g~~G~V~NI~f~ 408 (527)
..+.++-++..|+|.+|.+... -++-+|+.-..+....-.+|+++++.|.+.. ++-||.- +.-.|-|-.|+
T Consensus 177 Gl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRf---G~vHvyNNYy~ 249 (345)
T COG3866 177 GLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRF---GMVHVYNNYYE 249 (345)
T ss_pred ccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEe---eEEEEeccccc
Confidence 5678888889999999999873 4677776432222244577999999988763 3334322 11245555555
No 28
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.14 E-value=1.1e-05 Score=73.15 Aligned_cols=118 Identities=23% Similarity=0.345 Sum_probs=77.2
Q ss_pred eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCc-eeEeccC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD-CVSIQTG 342 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD-~Iai~sg 342 (527)
+|.+..+..++|++.+|.+ ...++.+....++.|+++.+... ..|+.+..+.+++|++|.+....+ +|.+...
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~ 98 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIENNGDYGIYISNS 98 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-TCE
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEEcCCCccEEEecc
Confidence 5677777778888888888 67778888888899999999863 268888888899999999886544 8888642
Q ss_pred CceeEEeeeccCC--CCcccccccCCCCccceeeceeEeeeeeecce-eeeEEee
Q 009748 343 CSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKT 394 (527)
Q Consensus 343 s~NV~I~n~~~~~--g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~-~Gi~Ikt 394 (527)
..++.|++|++.. +.|+.+... .-.++.|+++++.+.. .|+.+..
T Consensus 99 ~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 99 SSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNGGNGIYLIS 146 (158)
T ss_dssp ECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECESSEEEE-TT
T ss_pred CCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCcceeEEEEC
Confidence 5788999998876 356666432 1247778888888764 6776544
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.14 E-value=3e-05 Score=76.67 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=99.0
Q ss_pred eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs 343 (527)
.+.+..+.+++|++.++.+. .++|++..|++++|+++.+.. +..||.+..+.+.+|++++|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 56788999999999999987 788999999999999999997 4489999988888999999998877998876 5
Q ss_pred ceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeecc-eeeeEEeeeccCcceeeeEEe
Q 009748 344 SNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNT-MNGVRIKTWQGGSGSVQGVLF 407 (527)
Q Consensus 344 ~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~-~~Gi~Ikt~~g~~G~V~NI~f 407 (527)
.+.+|+++++.. ..||.+.. ..+.+|++++|.+. ..|+.+... .....|.+-.|
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~---------s~~n~I~~N~i~~n~~~Gi~~~~~-s~~n~I~~N~f 165 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSS---------SSNNTITGNTISNNTDYGIYFLSG-SSGNTIYNNNF 165 (236)
T ss_pred CceEEECcEEeCCCEEEEEEe---------CCCCEEECeEEeCCCccceEEecc-CCCCEEECCCc
Confidence 778888888864 45777743 26778888888887 788883321 22234444444
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=3.6e-05 Score=77.44 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=51.8
Q ss_pred CceeEeccCCceeEEeeeccCCC---------Cc-ccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccC--cce
Q 009748 334 DDCVSIQTGCSNVYVHNVNCGPG---------HG-ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGG--SGS 401 (527)
Q Consensus 334 DD~Iai~sgs~NV~I~n~~~~~g---------~G-I~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~--~G~ 401 (527)
+|+|.|..+..||.|++|++..+ +| +.|+ ..-..|+|.++.+.+...++-+...+.. ...
T Consensus 144 ~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik--------~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~ 215 (345)
T COG3866 144 YDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIK--------KDANYITISYNKFHDHDKSSLLGSSDSSNYDDG 215 (345)
T ss_pred CCcEEeccCCeEEEEEeeEeccccccccccCCCccEEec--------cCCcEEEEEeeeeecCCeeeeeccCCcccccCC
Confidence 68999977689999999998652 23 3332 2246899999999999888777654321 134
Q ss_pred eeeEEeeeeEeeee
Q 009748 402 VQGVLFSNIQVSEV 415 (527)
Q Consensus 402 V~NI~f~Ni~v~~v 415 (527)
-.+|||.+..+++.
T Consensus 216 ~~kvT~hhNyFkn~ 229 (345)
T COG3866 216 KYKVTIHHNYFKNL 229 (345)
T ss_pred ceeEEEeccccccc
Confidence 46677777777654
No 31
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.11 E-value=0.00011 Score=73.35 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=36.9
Q ss_pred CCcceeeecccccCCCCCcchHHHHHHHHhcccceeeeEEecCceeE--EEeeeccccccccceEEEEecceEEc
Q 009748 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVF--LVGPMSFSGPYCQANIIFQLDGTIIA 178 (527)
Q Consensus 106 ~~~~~~V~~~GA~~dg~tDdt~Aiq~Ai~~a~~~gg~~V~iP~G~~y--l~~~l~l~g~~~~sni~l~~~Gtl~~ 178 (527)
...++|+.||-.+ |=-++|..|+.. +.+|++|+|-+. +-..+.+ ..+-+|.+.|.|..
T Consensus 31 ~~~~vni~dy~~~-----dwiasfkqaf~e-----~qtvvvpagl~cenint~ifi-----p~gktl~v~g~l~g 90 (464)
T PRK10123 31 ARQSVNINDYNPH-----DWIASFKQAFSE-----GQTVVVPAGLVCDNINTGIFI-----PPGKTLHILGSLRG 90 (464)
T ss_pred CCceeehhhcCcc-----cHHHHHHHHhcc-----CcEEEecCccEecccccceEe-----CCCCeEEEEEEeec
Confidence 4568899999754 445678888764 578999999322 1123333 34556666666654
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.06 E-value=3.2e-05 Score=76.48 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=108.6
Q ss_pred ceEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccC
Q 009748 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG 342 (527)
Q Consensus 263 ~~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sg 342 (527)
..+.+..+.++.|++.++.+. ..++.+..+.+++|++++|.. +..||++..+++++|+++.+.....+|.+...
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s 87 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMGS 87 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEcC
Confidence 368899999999999999875 466789999999999999997 46899999999999999999988899999884
Q ss_pred CceeEEeeeccCC-CCcccccccCCCCccceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeeee-eecEE
Q 009748 343 CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEV-QLPIV 420 (527)
Q Consensus 343 s~NV~I~n~~~~~-g~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v-~~pi~ 420 (527)
.+.+|+++++.. ..||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..+|.
T Consensus 88 -~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 88 -SNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred -CCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceE
Confidence 455999999987 44776642 34578999999888889988653 4555666666555 56666
No 33
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.86 E-value=5.7e-05 Score=73.33 Aligned_cols=112 Identities=28% Similarity=0.400 Sum_probs=75.0
Q ss_pred eeEEEEEE----EEecCCcceeeec-ceeEEEEEEeeecC-----------CCCCCCCCceeeecccceEEEecccccC-
Q 009748 271 FNVTVTGI----TIQNSPQCHLKFD-NCIGVVVHDVSVSS-----------PGDSPNTDGIHLQNSKDVLIHTSNLACG- 333 (527)
Q Consensus 271 ~nv~I~gi----ti~ns~~~~i~~~-~c~nV~I~nv~I~s-----------~~~~~ntDGI~i~~s~nV~I~n~~i~~g- 333 (527)
.|.+|.|. +|.+ +++.+. .++||.|+|++|.. .......|+|.+..++||+|++|++..+
T Consensus 21 snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~ 97 (200)
T PF00544_consen 21 SNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGN 97 (200)
T ss_dssp SSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETT
T ss_pred CCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccc
Confidence 46667663 2222 455665 78899999998887 1224578999999999999999999866
Q ss_pred --------CceeEeccCCceeEEeeeccCCC-CcccccccCCCCccceeeceeEeeeeeecc
Q 009748 334 --------DDCVSIQTGCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (527)
Q Consensus 334 --------DD~Iai~sgs~NV~I~n~~~~~g-~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~ 386 (527)
|..+.++.++.+|+|.+|.+... .+..+|+.-....... .+|+|.++.+.++
T Consensus 98 ~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 98 FECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp S-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred cccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 55578888899999999999763 3566666322211223 7889888888765
No 34
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.84 E-value=0.00025 Score=76.53 Aligned_cols=173 Identities=15% Similarity=0.269 Sum_probs=96.8
Q ss_pred ceeeecceeEEEEEEeeecCCCCCCCCCceeeeccc----ceEEEeccccc----CCceeEeccCCceeEEeeeccCC-C
Q 009748 286 CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK----DVLIHTSNLAC----GDDCVSIQTGCSNVYVHNVNCGP-G 356 (527)
Q Consensus 286 ~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~----nV~I~n~~i~~----gDD~Iai~sgs~NV~I~n~~~~~-g 356 (527)
|++....+++.++++++|..+.. -.+++.+.+ +..|+|..+.. .-||+.+. +|-+|+||+++. .
T Consensus 321 ~~~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly---~nS~i~dcF~h~nD 393 (582)
T PF03718_consen 321 WHISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY---PNSTIRDCFIHVND 393 (582)
T ss_dssp EECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B-----TT-EEEEEEEEESS
T ss_pred hhhccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCcccc---CCCeeeeeEEEecC
Confidence 44567788999999999998642 245665433 36777777653 46788875 577889999986 3
Q ss_pred CcccccccCCCCccceeeceeEeeeeeecceeeeEEee-eccCcceeeeEEeeeeEeeeee---------ecEEEe-eee
Q 009748 357 HGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKT-WQGGSGSVQGVLFSNIQVSEVQ---------LPIVID-QFY 425 (527)
Q Consensus 357 ~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt-~~g~~G~V~NI~f~Ni~v~~v~---------~pi~I~-~~y 425 (527)
++|.+ +-+++.++|+++....+|--|.- |. ...++||.|+|+.+-... .+|.-. .+|
T Consensus 394 D~iKl----------YhS~v~v~~~ViWk~~Ngpiiq~GW~--pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y 461 (582)
T PF03718_consen 394 DAIKL----------YHSNVSVSNTVIWKNENGPIIQWGWT--PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFY 461 (582)
T ss_dssp -SEE------------STTEEEEEEEEEE-SSS-SEE--CS-----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BT
T ss_pred chhhe----------eecCcceeeeEEEecCCCCeEEeecc--ccccCceEEeeeEEEeeeeecccCCCCceeEeccccc
Confidence 45644 24789999999998877655532 33 347999999999996553 123322 244
Q ss_pred ecCCccccccceEEeeceeeeEeeeeEEeeeeeeeecCCCceeeeeeeeEeec
Q 009748 426 CDKSTCKNQTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELK 478 (527)
Q Consensus 426 ~~~~~~~~~~~~~~i~nItf~NI~gt~~~~pi~i~c~~~~~~~~I~f~nV~v~ 478 (527)
.+-..-....+.-.|++++|+||+..+.. +..|.=.+-..-+|+.++||.+.
T Consensus 462 ~~~~s~~~adp~~ti~~~~~~nv~~EG~~-~~l~ri~plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 462 DDMASTKTADPSTTIRNMTFSNVRCEGMC-PCLFRIYPLQNYDNLVIKNVHFE 513 (582)
T ss_dssp TS-SSS--BEEEEEEEEEEEEEEEEECCE--ECEEE--SEEEEEEEEEEEEEC
T ss_pred ccccCCCCCCcccceeeEEEEeEEEeccc-ceeEEEeecCCCcceEEEEeecc
Confidence 22222122334568999999999977543 22222223344566778888876
No 35
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.81 E-value=0.00054 Score=68.36 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcccceeeeEEecCceeEEEe-----eeccccccccceEEEEec
Q 009748 126 TKAFEAAWAAACKVEASIMVVPAESVFLVG-----PMSFSGPYCQANIIFQLD 173 (527)
Q Consensus 126 t~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~-----~l~l~g~~~~sni~l~~~ 173 (527)
-+-|++|++.|. .|.+|+|-+| +|... ||.+ ++.++|+.+
T Consensus 15 ~~Ti~~A~~~a~--~g~~i~l~~G-tY~~~~ge~fPi~i-----~~gVtl~G~ 59 (246)
T PF07602_consen 15 FKTITKALQAAQ--PGDTIQLAPG-TYSEATGETFPIII-----KPGVTLIGN 59 (246)
T ss_pred HHHHHHHHHhCC--CCCEEEECCc-eeccccCCcccEEe-----cCCeEEeec
Confidence 345899998754 3789999999 88542 3555 556777654
No 36
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.78 E-value=0.0004 Score=73.94 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=21.2
Q ss_pred chHHHHHHHHhcccceeeeEEecCceeEEEeeecc
Q 009748 125 DTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSF 159 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~~l~l 159 (527)
+.++||+|+++|. .|++|+|+.| +|.-..|.|
T Consensus 3 s~~~lq~Ai~~a~--pGD~I~L~~G-ty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNAK--PGDTIVLADG-TYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH----TT-EEEE-SE-EEET-EEEE
T ss_pred CHHHHHHHHHhCC--CCCEEEECCc-eeecceEEE
Confidence 5789999998654 4899999999 886334444
No 37
>PLN02634 probable pectinesterase
Probab=97.75 E-value=0.0042 Score=65.19 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.6
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. .-+|+|-+| +|. ..|.++. -+.+++|+.+|
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~G-vY~-EkV~Ip~--~k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAG-FYR-EKVVVPA--TKPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCc-eEE-EEEEEcC--CCCeEEEEecC
Confidence 5778999999876532 347899999 785 3444431 15678887765
No 38
>PLN02304 probable pectinesterase
Probab=97.63 E-value=0.011 Score=62.32 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=33.2
Q ss_pred CCCCcchHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 120 NGVSDDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 120 dg~tDdt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
||.. |-.-||+||+++.+.. .-+|+|.+| +|. ..|.++. -+.+|+|+.+|
T Consensus 82 dGsG-df~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~-EkV~Ip~--~K~~Itl~G~g 133 (379)
T PLN02304 82 NGCC-NFTTVQSAVDAVGNFSQKRNVIWINSG-IYY-EKVTVPK--TKPNITFQGQG 133 (379)
T ss_pred CCCC-CccCHHHHHhhCcccCCCcEEEEEeCe-EeE-EEEEECC--CCCcEEEEecC
Confidence 4433 5778999999876532 347899999 785 4444432 15688887765
No 39
>smart00656 Amb_all Amb_all domain.
Probab=97.62 E-value=0.0014 Score=63.15 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=90.2
Q ss_pred eEEEeeeeeEEEEEEEEecCCc------ceeeecceeEEEEEEeeecCCC----CCCCCCce-eee-cccceEEEecccc
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQ------CHLKFDNCIGVVVHDVSVSSPG----DSPNTDGI-HLQ-NSKDVLIHTSNLA 331 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~------~~i~~~~c~nV~I~nv~I~s~~----~~~ntDGI-~i~-~s~nV~I~n~~i~ 331 (527)
.|.+..++||.|++|+|++... .+|.+..+++|.|++|++.... .....||. ++. .+++|+|++|.+.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4666678999999999998543 5789999999999999999641 01124554 443 5799999999998
Q ss_pred cCCceeEeccCCc-------eeEEeeeccCCC--CcccccccCCCCccceeeceeEeeeeeecce-eeeEEeeeccCcce
Q 009748 332 CGDDCVSIQTGCS-------NVYVHNVNCGPG--HGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQGGSGS 401 (527)
Q Consensus 332 ~gDD~Iai~sgs~-------NV~I~n~~~~~g--~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~-~Gi~Ikt~~g~~G~ 401 (527)
..+-+..++.+.+ +|++.+|.+... +.=.+. . ..+++.|+.+.+.. +++.+ ..+..-.
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~---g~~hv~NN~~~n~~~~~~~~--~~~~~v~ 180 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------F---GYVHVYNNYYTGWTSYAIGG--RMGATIL 180 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------C---CEEEEEeeEEeCcccEeEec--CCCcEEE
Confidence 7666677766422 699999988652 222221 1 15788888887764 44433 2233334
Q ss_pred eeeEEeee
Q 009748 402 VQGVLFSN 409 (527)
Q Consensus 402 V~NI~f~N 409 (527)
+++-.|++
T Consensus 181 ~E~N~F~~ 188 (190)
T smart00656 181 SEGNYFEA 188 (190)
T ss_pred EECeEEEC
Confidence 55555554
No 40
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.0041 Score=63.76 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=53.6
Q ss_pred eeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCC---CCCCCceeeecccceEEEecccccCCceeEeccCCceeE
Q 009748 271 FNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD---SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVY 347 (527)
Q Consensus 271 ~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~---~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV~ 347 (527)
..-.|+...+... .++|.+..+.++.|++.+|....+ ..-++||+++++++.+|....|+.+.|||.... +++-.
T Consensus 107 t~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~ 184 (408)
T COG3420 107 TGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNV 184 (408)
T ss_pred ccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccce
Confidence 3344444444432 356777777788888888775433 235678888888889999998888888888766 33444
Q ss_pred Eeeecc
Q 009748 348 VHNVNC 353 (527)
Q Consensus 348 I~n~~~ 353 (527)
|+++.+
T Consensus 185 ~~gnr~ 190 (408)
T COG3420 185 FKGNRF 190 (408)
T ss_pred ecccch
Confidence 444433
No 41
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.50 E-value=0.0088 Score=63.98 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=34.7
Q ss_pred cCCCCCcchHHHHHHHHhcccce---eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 118 KGNGVSDDTKAFEAAWAAACKVE---ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 118 ~~dg~tDdt~Aiq~Ai~~a~~~g---g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
.+||.. |-.-||+||+++...+ --+|+|-+| +|. ..|.++. -+.+|+|+.+|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~-EkV~Ip~--~kp~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQ-GTVYVPA--AAPPITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCc-eeE-EEEEeCC--CCceEEEEecC
Confidence 455543 5778999999764322 357889999 885 4455532 16789998765
No 42
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.40 E-value=0.0029 Score=61.13 Aligned_cols=122 Identities=24% Similarity=0.403 Sum_probs=77.3
Q ss_pred EEEEEEEEecCC------cceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCcee
Q 009748 273 VTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346 (527)
Q Consensus 273 v~I~giti~ns~------~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV 346 (527)
+.|++++|.... ...+++..|++++|+||++... +.+|+.+..+....+.+.... .++.+..+..++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 447777776433 2458899999999999999973 567888875555555444332 134444444667
Q ss_pred EEeeeccCCC-CcccccccCCCCccceeeceeEeeeeeec-ceeeeEEeeeccCcceeeeEEeeeeEeeeeeec
Q 009748 347 YVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHN-TMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLP 418 (527)
Q Consensus 347 ~I~n~~~~~g-~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~-~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~v~~p 418 (527)
.+.++.+..+ .|+..+. ++++++|+.+.+ ...|+.+.... ++.++|+++++...+
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~-------~~~i~n~~i~~~~~g 223 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS-------NIIISNNTIENCDDG 223 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS-------EEEEEEEEEESSSEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe-------EEEEEeEEEECCccC
Confidence 7788877653 3543321 688999999987 67888876532 255555555554433
No 43
>PLN02773 pectinesterase
Probab=97.36 E-value=0.011 Score=61.33 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=31.6
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|.+| +|. ..|.++.. +.+++|+.++
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G-~Y~-E~V~I~~~--k~~itl~G~~ 63 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPG-VYR-QPVYVPKT--KNLITLAGLS 63 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCc-eEE-EEEEECcC--CccEEEEeCC
Confidence 5778999999876532 247899999 885 45555321 4578887653
No 44
>PLN02480 Probable pectinesterase
Probab=97.28 E-value=0.011 Score=62.01 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=30.6
Q ss_pred cchHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 124 Ddt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
.|-.-||+||++|.... --+|+|.+| +|. +.|.++.. +.+++|+.+|
T Consensus 58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~G-vY~-E~V~I~~~--kp~ItL~G~g 106 (343)
T PLN02480 58 GDFTSVQSAIDAVPVGNSEWIIVHLRKG-VYR-EKVHIPEN--KPFIFMRGNG 106 (343)
T ss_pred CCcccHHHHHhhCccCCCceEEEEEcCc-EEE-EEEEECCC--CceEEEEecC
Confidence 36889999999876421 125889999 885 55555311 4466766543
No 45
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.98 E-value=0.025 Score=62.95 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=31.6
Q ss_pred chHHHHHHHHhcccc---eeeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKV---EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~---gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+. +.-+|+|.+| +|. ..+.++.. +.+++|..+|
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~-E~V~i~~~--k~~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYE-ETVRVPLE--KKNVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCc-eEE-eeeeecCC--CccEEEEecC
Confidence 577899999988762 2348999999 785 34444321 5677777765
No 46
>PLN02665 pectinesterase family protein
Probab=96.93 E-value=0.09 Score=55.58 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=31.0
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|.+| +|. ..+.++. -+.+|+|+.+|
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~-EkV~Ip~--~kp~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPG-EYN-EKITIDR--SKPFVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCc-EEE-EEEEecC--CCCEEEEEecC
Confidence 5778999999876532 247889999 886 3444421 15678887664
No 47
>PLN02432 putative pectinesterase
Probab=96.88 E-value=0.061 Score=55.25 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=31.2
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... --+|+|.+| +|. ..|.++. -+.+++|+.+|
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~-E~V~ip~--~k~~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYR-EKVVVPA--DKPFITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeE-EEEEEec--cCceEEEEEcC
Confidence 5778999999886543 347899999 883 4444532 15677776653
No 48
>PLN02682 pectinesterase family protein
Probab=96.86 E-value=0.073 Score=56.26 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=31.8
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|.+| +|. ..+.++. -+.+|+|+.+|
T Consensus 81 df~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~-EkV~Ip~--~k~~Itl~G~g 128 (369)
T PLN02682 81 DFTTIQAAIDSLPVINLVRVVIKVNAG-TYR-EKVNIPP--LKAYITLEGAG 128 (369)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eee-EEEEEec--cCceEEEEecC
Confidence 5778999999876432 357899999 885 4444431 15678887765
No 49
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.79 E-value=0.047 Score=61.21 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=33.5
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|.+| +|.-..+.++.. +.|++|+.+|
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~--k~ni~l~G~g 331 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGRK--KTNLMFIGDG 331 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECCC--CceEEEEecC
Confidence 5778999999876532 357899999 886544555321 5688887775
No 50
>PLN02916 pectinesterase family protein
Probab=96.76 E-value=0.072 Score=58.41 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=31.5
Q ss_pred chHHHHHHHHhcccc-----eeeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKV-----EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~-----gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+. .--+|+|.+| +|. ..+.++.. +.+++|+.+|
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~-E~V~I~~~--k~~i~l~G~g 248 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAG-VYN-EKVEIDRH--MKNVMFVGDG 248 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCc-eee-EEEEecCC--CceEEEEecC
Confidence 577899999987642 1347999999 885 34444321 5678887765
No 51
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=96.75 E-value=0.086 Score=58.13 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=31.3
Q ss_pred chHHHHHHHHhcccc---eeeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKV---EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~---gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++... .--+|+|.+| +|. ..+.++. -+.+++|+.+|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~-E~V~I~~--~k~nItl~G~g 284 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAG-TYH-ENLNIPT--KQKNVMLVGDG 284 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCC-eeE-EEEecCC--CCceEEEEEcC
Confidence 577899999965422 2357999999 785 4444432 15688887765
No 52
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.70 E-value=0.0082 Score=58.31 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=59.6
Q ss_pred eeeeeEEEEEEEEec---------------CCcceeeecceeEEEEEEeeecCCCC---CCCCCc-eeee-cccceEEEe
Q 009748 268 YGSFNVTVTGITIQN---------------SPQCHLKFDNCIGVVVHDVSVSSPGD---SPNTDG-IHLQ-NSKDVLIHT 327 (527)
Q Consensus 268 ~~~~nv~I~giti~n---------------s~~~~i~~~~c~nV~I~nv~I~s~~~---~~ntDG-I~i~-~s~nV~I~n 327 (527)
.+++||.|++++|++ .....|.++.+++|.|++|++..... ....|| +++. .+++|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 489999999999998 24456999999999999999996411 111555 5665 589999999
Q ss_pred cccccCCceeEeccC-------CceeEEeeeccCC
Q 009748 328 SNLACGDDCVSIQTG-------CSNVYVHNVNCGP 355 (527)
Q Consensus 328 ~~i~~gDD~Iai~sg-------s~NV~I~n~~~~~ 355 (527)
|.+...+.+..++.. ..+|++.+|.+..
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~ 157 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFAN 157 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECc
Confidence 999875544444331 2578888887754
No 53
>PLN02176 putative pectinesterase
Probab=96.69 E-value=0.11 Score=54.40 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=31.8
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... --+|+|.+| +|. ..|.++.. +.+|+|+.+|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~-EkV~Ip~~--k~~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYR-EKVTIPKE--KGYIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCc-EEE-EEEEECCC--CccEEEEEcC
Confidence 5778999999876532 247899999 885 34444321 5678887764
No 54
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.69 E-value=0.074 Score=59.41 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=31.3
Q ss_pred chHHHHHHHHhcccc-----eeeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKV-----EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~-----gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+. +--+|+|.+| +|. ..+.++.. +.+|+|+.+|
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G-~Y~-E~V~i~~~--k~~i~l~G~g 311 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAG-VYE-EYVSIPKN--KKYLMMIGDG 311 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCc-EEE-EEEEecCC--CceEEEEecC
Confidence 577899999987653 1247999999 885 34444321 5677777765
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.67 E-value=0.073 Score=58.81 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=32.5
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. .-+|+|-+| +|. ..+.++.. +.+++|+.+|
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~--k~~itl~G~g 276 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGG-EYF-ENVELPKK--KTMIMFIGDG 276 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCc-eEE-EEEEecCC--CceEEEEEcC
Confidence 5778999999876532 347999999 786 45555321 5678887765
No 56
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.64 E-value=0.063 Score=59.54 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=30.5
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|.+| +|.- .+.+.. -+.+++|+.+|
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E-~V~I~~--~k~~i~l~G~g 290 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKG-VYKE-NIDMKK--KKTNIMLVGDG 290 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeeE-EEeccC--CCceEEEEEcC
Confidence 5778999999876532 358999999 7843 333321 14677777664
No 57
>PLN02497 probable pectinesterase
Probab=96.55 E-value=0.15 Score=53.25 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=31.3
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... --+|+|-+| +|. ..+.++. -+.+++|+.+|
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G-~Y~-EkV~Ip~--~k~~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAG-LYR-EKVKIPY--DKPFIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-EEE-EEEEecC--CCCcEEEEecC
Confidence 5778999999876643 236999999 884 3444421 15678877664
No 58
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.48 E-value=0.11 Score=57.91 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=31.9
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. .-+|+|-+| +|. ..+.++.. +.+++|+.+|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~-E~V~i~~~--k~~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKG-TYK-ENVEIGKK--KKNLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCc-eee-EEEEecCC--CceEEEEecC
Confidence 5778999999876543 247999999 785 34444321 5677777765
No 59
>PLN02671 pectinesterase
Probab=96.45 E-value=0.14 Score=53.89 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=31.2
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|-+| +|. ..|.++.. +.+|+|+.+|
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~-EkV~I~~~--k~~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPG-IYR-EKVLVPKS--KPYISFIGNE 117 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCc-eEE-EEEEECCC--CCeEEEEecC
Confidence 5778999999876532 347999999 785 34444311 5677777654
No 60
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.39 E-value=0.17 Score=55.90 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=32.2
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|.+| +|. ..+.++.. +.+|+|+.+|
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~--k~~i~l~G~g 264 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKG-VYL-ENVEIKKK--KWNIMMVGDG 264 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCc-eeE-EEEEecCC--CceEEEEecC
Confidence 6778999999876532 358999999 885 44444321 5678887765
No 61
>PLN02314 pectinesterase
Probab=96.36 E-value=0.11 Score=58.23 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=31.6
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+|++++.+.. .-+|+|.+| +|. ..+.++.. +.|++|+.+|
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~-E~V~i~~~--k~~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYV-ENVLLDKS--KWNVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEE-EEEEecCC--CceEEEEecC
Confidence 5677999999876532 347999999 785 34444321 5678887765
No 62
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.33 E-value=0.15 Score=56.76 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=45.1
Q ss_pred EEeeeeeEEEEEEEEecCCc----ceeee-cceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEec
Q 009748 266 RFYGSFNVTVTGITIQNSPQ----CHLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340 (527)
Q Consensus 266 ~~~~~~nv~I~giti~ns~~----~~i~~-~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~ 340 (527)
.....+++..+||+|+|... ..+-+ ...+...+.+|.|.+. .|-+.... .+-..++|+|...=|-|.
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy-----QDTLy~~~-~rq~y~~c~I~GtVDFIF-- 379 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY-----QDTLYVHS-LRQFYRECDIYGTVDFIF-- 379 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc-----CcccccCC-CcEEEEeeEEeeccceEe--
Confidence 34466889999999999643 12322 2456666777777752 23333222 235666677665444332
Q ss_pred cCCceeEEeeeccC
Q 009748 341 TGCSNVYVHNVNCG 354 (527)
Q Consensus 341 sgs~NV~I~n~~~~ 354 (527)
|.-.++++||.+.
T Consensus 380 -G~a~avfq~c~i~ 392 (538)
T PLN03043 380 -GNAAAIFQNCNLY 392 (538)
T ss_pred -ecceeeeeccEEE
Confidence 2245666666653
No 63
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.33 E-value=0.13 Score=57.32 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=31.7
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-+-||+||+++.+.. .-+|+|.+| +|. ..+.++.. +.+++|+.+|
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~-E~V~i~~~--k~~i~l~G~g 288 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREG-VYE-ENVEIPIY--KTNIVLIGDG 288 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCc-eeE-EEEecCCC--CccEEEEecC
Confidence 5778999999876532 347899999 885 34444321 5678887765
No 64
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.32 E-value=0.097 Score=59.34 Aligned_cols=140 Identities=8% Similarity=0.049 Sum_probs=81.2
Q ss_pred EeeeeeEEEEEEEEecCCc----ceeee-cceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEecc
Q 009748 267 FYGSFNVTVTGITIQNSPQ----CHLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT 341 (527)
Q Consensus 267 ~~~~~nv~I~giti~ns~~----~~i~~-~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~s 341 (527)
....+++..+||+|+|... ..+-+ ...+...+.+|.|.+. .|-+.... .+-..++|+|...=|-|.
T Consensus 333 ~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFIF--- 403 (670)
T PLN02217 333 AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGY-----QDTLYAHS-HRQFYRDCTISGTIDFLF--- 403 (670)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeec-----cchhccCC-CcEEEEeCEEEEeccEEe---
Confidence 3457889999999998753 22333 3578888999999863 34443332 356888999887655443
Q ss_pred CCceeEEeeeccCCC-----CcccccccCCCCccceeeceeEeeeeeecceeeeE----EeeeccC-cceeeeEEeeeeE
Q 009748 342 GCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVR----IKTWQGG-SGSVQGVLFSNIQ 411 (527)
Q Consensus 342 gs~NV~I~n~~~~~g-----~GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~----Ikt~~g~-~G~V~NI~f~Ni~ 411 (527)
|.-..+++||.+..- ..-.|=..++. +...-..+.|.||++......+. .+.+-|+ .+.-..+.|-+..
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~ 482 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTF 482 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecc
Confidence 335788888887531 11111111211 11223568899999987542111 1222222 1235677777777
Q ss_pred eeeee
Q 009748 412 VSEVQ 416 (527)
Q Consensus 412 v~~v~ 416 (527)
|.+.=
T Consensus 483 l~~~I 487 (670)
T PLN02217 483 IPDFV 487 (670)
T ss_pred cCCeE
Confidence 76653
No 65
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.29 E-value=0.22 Score=54.64 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=32.0
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. --+|+|.+| +|.- .+.++. -+.+++|..+|
T Consensus 208 ~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~nItliGdg 255 (509)
T PLN02488 208 KYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDE-IVRIGS--TKPNLTLIGDG 255 (509)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeEE-EEEecC--CCccEEEEecC
Confidence 6778999999876532 347999999 8853 444432 15678887765
No 66
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.28 E-value=0.23 Score=52.61 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=54.4
Q ss_pred eeeeeEEEEEEEEecCC-cceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCcee
Q 009748 268 YGSFNVTVTGITIQNSP-QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346 (527)
Q Consensus 268 ~~~~nv~I~giti~ns~-~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV 346 (527)
.+-.+|++.|+.+...+ .-++-+..-.++++++|.+.+- + |..+..-....|++|++...--||.-+ +...+
T Consensus 118 ~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~--g~cl~~~~~~~VrGC~F~~C~~gi~~~-~~~~l 190 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----H--GTCLESWAGGEVRGCTFYGCWKGIVSR-GKSKL 190 (386)
T ss_pred eeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----c--ceeEEEcCCcEEeeeEEEEEEEEeecC-CcceE
Confidence 34567778888887766 5556777777888888887763 2 333343456778888886554444332 24677
Q ss_pred EEeeeccCCCC-cc
Q 009748 347 YVHNVNCGPGH-GI 359 (527)
Q Consensus 347 ~I~n~~~~~g~-GI 359 (527)
.|++|.|+... ||
T Consensus 191 sVk~C~FekC~igi 204 (386)
T PF01696_consen 191 SVKKCVFEKCVIGI 204 (386)
T ss_pred EeeheeeeheEEEE
Confidence 77777777643 44
No 67
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.27 E-value=0.12 Score=57.76 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=45.1
Q ss_pred EeeeeeEEEEEEEEecCCcc----eeee-cceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEecc
Q 009748 267 FYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT 341 (527)
Q Consensus 267 ~~~~~nv~I~giti~ns~~~----~i~~-~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~s 341 (527)
....+++..+||+|+|...- .+-+ ...+...+.+|.|.+. .|-+.... .+-..++|.|...=|=|.
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~-----QDTLy~~~-~rq~y~~C~I~GtvDFIF--- 411 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAF-----QDTLYAHA-QRQFYRECNIYGTVDFIF--- 411 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEec-----cchhccCC-CceEEEeeEEecccceee---
Confidence 34567889999999986431 2222 3466677777777753 23333222 244567777765544332
Q ss_pred CCceeEEeeeccC
Q 009748 342 GCSNVYVHNVNCG 354 (527)
Q Consensus 342 gs~NV~I~n~~~~ 354 (527)
|.-.++++||.+.
T Consensus 412 G~a~avfq~c~i~ 424 (565)
T PLN02468 412 GNSAVVFQNCNIL 424 (565)
T ss_pred ccceEEEeccEEE
Confidence 2346666677664
No 68
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.27 E-value=0.17 Score=56.88 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=32.0
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. .-+|+|.+| +|.- .+.++.. +.+++|+.+|
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~--k~~i~l~G~g 343 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQG-IYDE-TVTVDKK--MVNVTMYGDG 343 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCC-eeEE-EEEEcCC--CceEEEEecC
Confidence 5778999999876532 357999999 8853 3444321 5678887775
No 69
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.20 E-value=0.2 Score=56.09 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=32.0
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. --+|+|.+| +|.- .+.++.. +.+++|+.+|
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~~--k~~i~l~G~g 317 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQG-VYNE-KVDVTKK--MTHVTFIGDG 317 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCc-eeEE-EEEecCC--CCcEEEEecC
Confidence 5778999999876532 347999999 8853 4444321 5678887775
No 70
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.16 E-value=0.12 Score=58.17 Aligned_cols=46 Identities=28% Similarity=0.309 Sum_probs=31.9
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.... .-+|+|.+| +|.- .+.++.. +.|++|..+|
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E-~V~i~~~--k~ni~l~Gdg 333 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAG-VYRE-NVEVTKK--KKNIMFLGDG 333 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCc-eeEE-EEEeCCC--CCeEEEEecC
Confidence 6778999999886542 348999999 8853 3444321 5677777765
No 71
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.07 E-value=0.23 Score=55.31 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=32.0
Q ss_pred chHHHHHHHHhcccc----eeeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKV----EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~----gg~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++... +.-+|+|.+| +|.- .+.++. .+.+|+|+.+|
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E-~V~i~~--~k~~i~l~G~g 283 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQE-NINVRL--NNDDIMLVGDG 283 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCC-EeEE-EEEecC--CCCcEEEEEcC
Confidence 677899999987531 2457999999 8854 344432 16688888775
No 72
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=95.97 E-value=0.0063 Score=47.14 Aligned_cols=39 Identities=36% Similarity=0.432 Sum_probs=23.8
Q ss_pred ccCCCCCcchHHHHHHHHhcccceeeeEEecCceeEEEeeec
Q 009748 117 AKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMS 158 (527)
Q Consensus 117 A~~dg~tDdt~Aiq~Ai~~a~~~gg~~V~iP~G~~yl~~~l~ 158 (527)
|+|||++|||.||.+|+++.. .+.++=-.|.||.+..|.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~---~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASP---VGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhccC---CCeEEecCCceEEEeeCc
Confidence 789999999999999998643 345555667799888763
No 73
>PLN02197 pectinesterase
Probab=95.88 E-value=0.2 Score=56.17 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=31.8
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. --+|+|-+| +|. ..+.++. -+.+++|+.+|
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~--~k~ni~l~G~g 333 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAG-IYN-EQVTIPK--KKNNIFMFGDG 333 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCc-eEE-EEEEccC--CCceEEEEEcC
Confidence 5778999999876532 247999999 785 3444432 15678887775
No 74
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=95.85 E-value=0.092 Score=54.20 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=28.3
Q ss_pred cchHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 124 Ddt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
-|-.-||+||+++.... .-+|+|.+| +|. ..|.++.. +.+|+|..+|
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G-~Y~-E~V~i~~~--k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPG-TYR-EKVTIPRS--KPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-ST--STTEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCe-eEc-cccEeccc--cceEEEEecC
Confidence 36778999999877643 347999999 885 34444321 4577776653
No 75
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.22 E-value=0.96 Score=44.37 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=32.7
Q ss_pred EEEEEEeeecCCCCCCCCCceeeecccceEEEeccccc-CCceeEeccCCceeEEeeecc
Q 009748 295 GVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC-GDDCVSIQTGCSNVYVHNVNC 353 (527)
Q Consensus 295 nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~-gDD~Iai~sgs~NV~I~n~~~ 353 (527)
+.+++|+.|-. +..||||..+ +-+|+|+.... +.|++.++.....++|.+.-.
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga 115 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGA 115 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcc
Confidence 45566666643 2568888876 56777777664 788888877543555554443
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=93.09 E-value=2.6 Score=43.91 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=73.0
Q ss_pred eeeeEEEEEEEEecCCcc------eeee-cceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccC--------
Q 009748 269 GSFNVTVTGITIQNSPQC------HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG-------- 333 (527)
Q Consensus 269 ~~~nv~I~giti~ns~~~------~i~~-~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~g-------- 333 (527)
.+.+++|+|++++++..- +|.+ .......|+++++.. |.-||.+..+.++.|+.++|..-
T Consensus 75 ~aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~-----n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~r 149 (408)
T COG3420 75 AAPDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIG-----NSFGIYLHGSADVRIEGNTIQGLADLRVAER 149 (408)
T ss_pred eCCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccc-----cceEEEEeccCceEEEeeEEeeccccchhhc
Confidence 567899999999976532 2333 355667788888875 67799999999999999999762
Q ss_pred CceeEeccCCceeEEeeeccCCCC-cccccccCCCCccceeeceeEeeeeeecceeee
Q 009748 334 DDCVSIQTGCSNVYVHNVNCGPGH-GISIGSLGKDNTKACVSNITVRDVMMHNTMNGV 390 (527)
Q Consensus 334 DD~Iai~sgs~NV~I~n~~~~~g~-GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi 390 (527)
.++|.+.. +....|..+.+..++ ||-... -+.-.|+++.++....|+
T Consensus 150 GnGI~vyN-a~~a~V~~ndisy~rDgIy~~~---------S~~~~~~gnr~~~~Rygv 197 (408)
T COG3420 150 GNGIYVYN-APGALVVGNDISYGRDGIYSDT---------SQHNVFKGNRFRDLRYGV 197 (408)
T ss_pred cCceEEEc-CCCcEEEcCccccccceEEEcc---------cccceecccchhheeeeE
Confidence 34666655 577888777776544 565432 233445555555554443
No 77
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.79 E-value=0.13 Score=57.92 Aligned_cols=9 Identities=44% Similarity=0.508 Sum_probs=4.4
Q ss_pred eeecccccC
Q 009748 111 NVKDFGAKG 119 (527)
Q Consensus 111 ~V~~~GA~~ 119 (527)
-|+.||.++
T Consensus 608 PvlP~gLkp 616 (1102)
T KOG1924|consen 608 PVLPFGLKP 616 (1102)
T ss_pred ccCCCCCCc
Confidence 345555544
No 78
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=92.59 E-value=1.4 Score=45.57 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=28.9
Q ss_pred cchHHHHHHHHhccccee---eeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 124 DDTKAFEAAWAAACKVEA---SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 124 Ddt~Aiq~Ai~~a~~~gg---~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
++-.-||+|+++|...+. -.|.|-+| .|. +.+....+ ...|+|+.++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~G-vY~-e~v~Vp~~--~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAG-VYQ-ETVYVPAA--PGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccc-eec-eeEEecCC--CCceeEEecC
Confidence 456679999998876543 35668889 773 34444321 1237776553
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=89.77 E-value=0.36 Score=34.73 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=13.8
Q ss_pred ceeeecccceEEEecccccCCceeEecc
Q 009748 314 GIHLQNSKDVLIHTSNLACGDDCVSIQT 341 (527)
Q Consensus 314 GI~i~~s~nV~I~n~~i~~gDD~Iai~s 341 (527)
||.++.+.+.+|+++++....|||.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 3444444455555555554444555444
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=89.37 E-value=0.32 Score=35.02 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=31.4
Q ss_pred eeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEeccccc
Q 009748 288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC 332 (527)
Q Consensus 288 i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~ 332 (527)
|.+..+.+.+|++.+|.. +.|||++..+.+-+|+++++..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 556667777788888886 6679999988888888888764
No 81
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=89.05 E-value=6 Score=38.88 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=81.3
Q ss_pred EeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeeccc-ceEEEecccccCCceeEeccCCce
Q 009748 267 FYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK-DVLIHTSNLACGDDCVSIQTGCSN 345 (527)
Q Consensus 267 ~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~-nV~I~n~~i~~gDD~Iai~sgs~N 345 (527)
|.--+..+|+|+.|=.....+||... +.+|+|+....- -.|.+.+.+.. .++|.+.-..+.+|-|.=..+.-.
T Consensus 57 F~le~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gt 130 (215)
T PF03211_consen 57 FILEDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGT 130 (215)
T ss_dssp EEEETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEE
T ss_pred EEecCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCcee
Confidence 33456889999999777778898887 788999988863 56888888766 899999999988887765555566
Q ss_pred eEEeeeccCCCCcccccccCCCCcc-ceeeceeEeeeeeecceeeeEEeeeccCcceeeeEEeee
Q 009748 346 VYVHNVNCGPGHGISIGSLGKDNTK-ACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSN 409 (527)
Q Consensus 346 V~I~n~~~~~g~GI~IGs~g~~~~~-~~v~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~N 409 (527)
+.|+|.... ..|--+-|-|.-... +.-+.|.+++........-+.|-...+....|+++.+..
T Consensus 131 v~I~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 131 VTIKNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp EEEEEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred EEEEeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 777775433 222111122211111 223456665554433322344445555555666665555
No 82
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=86.69 E-value=1.5 Score=44.49 Aligned_cols=122 Identities=23% Similarity=0.312 Sum_probs=63.1
Q ss_pred eeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEeccCCceeEEe
Q 009748 270 SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVH 349 (527)
Q Consensus 270 ~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~ 349 (527)
.+|+++.+||-.|.. .-+|+.+.+++.|+|++-.+ |.++-|+.--|+|.+ ++|. ||.|..|+
T Consensus 245 vknfvvanitgs~cr-qlvhvengkhfvirnvkakn---------itpdfskkagidnat-------vaiy-gcdnfvid 306 (464)
T PRK10123 245 VKNFVVANITGSDCR-QLIHVENGKHFVIRNIKAKN---------ITPDFSKKAGIDNAT-------VAIY-GCDNFVID 306 (464)
T ss_pred hhhEEEEeccCcChh-heEEecCCcEEEEEeeeccc---------cCCCchhhcCCCcce-------EEEE-cccceEEe
Confidence 567777777776654 34788888888888887664 111112222222222 3333 36777777
Q ss_pred eeccCCCCcccccccCCCCcc-ceeeceeEeeeeeecce-----eeeEEeeeccCcceeeeEEeeeeEee
Q 009748 350 NVNCGPGHGISIGSLGKDNTK-ACVSNITVRDVMMHNTM-----NGVRIKTWQGGSGSVQGVLFSNIQVS 413 (527)
Q Consensus 350 n~~~~~g~GI~IGs~g~~~~~-~~v~nI~v~Ni~i~~~~-----~Gi~Ikt~~g~~G~V~NI~f~Ni~v~ 413 (527)
|+....+.|+-||.----+.- .--+|....|+.+.++. .|+.|.+.. ..+=|.+.|+.|+
T Consensus 307 ni~mvnsagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqissgn----atsfvaitn~~mk 372 (464)
T PRK10123 307 NIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISAGN----AVSFVALTNIEMK 372 (464)
T ss_pred ccccccccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEeccCC----cceEEEEeeeehh
Confidence 777766667666531000000 01145555555555543 455554422 2344444555554
No 83
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=83.98 E-value=7.8 Score=38.95 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=25.3
Q ss_pred ecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEeccccc-CCceeEe
Q 009748 290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC-GDDCVSI 339 (527)
Q Consensus 290 ~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~-gDD~Iai 339 (527)
+....+.+|++++|.++.. ...-||.+.++ +.+|+||+|.. ..++|.+
T Consensus 93 I~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v 141 (246)
T PF07602_consen 93 IILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFV 141 (246)
T ss_pred EEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEE
Confidence 3334556666777766421 12335666554 66666666654 3444433
No 84
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=73.63 E-value=16 Score=41.10 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=73.8
Q ss_pred ceeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCCCCcc
Q 009748 292 NCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTK 370 (527)
Q Consensus 292 ~c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~~ 370 (527)
..+++..+|++|.+.........+.+. .++...+.||.|....|.+..+++ .-++++|.+.+.-.+-+|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~------- 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQ--RQFYRECNIYGTVDFIFGN------- 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCC--ceEEEeeEEecccceeecc-------
Confidence 456888999999875432233445543 478899999999999998887763 4678999998766666654
Q ss_pred ceeeceeEeeeeeeccee----eeEEeeeccC--cceeeeEEeeeeEeeee
Q 009748 371 ACVSNITVRDVMMHNTMN----GVRIKTWQGG--SGSVQGVLFSNIQVSEV 415 (527)
Q Consensus 371 ~~v~nI~v~Ni~i~~~~~----Gi~Ikt~~g~--~G~V~NI~f~Ni~v~~v 415 (527)
....|+||++.-... .-.| +-+++ ...-..+.|.|+++...
T Consensus 414 ---a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 414 ---SAVVFQNCNILPRRPMKGQQNTI-TAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred ---ceEEEeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEccEEecC
Confidence 246788888863311 1122 22332 13446788999998864
No 85
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=73.05 E-value=15 Score=35.18 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=7.0
Q ss_pred CceeEEeeeccCC
Q 009748 343 CSNVYVHNVNCGP 355 (527)
Q Consensus 343 s~NV~I~n~~~~~ 355 (527)
..|.+|||+.|.+
T Consensus 63 F~ntlIENNVfDG 75 (198)
T PF08480_consen 63 FYNTLIENNVFDG 75 (198)
T ss_pred ccccEEEeeeecc
Confidence 4455555555554
No 86
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=72.52 E-value=24 Score=38.23 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=14.8
Q ss_pred eEEEeeeeeEEEEEEEEecCC
Q 009748 264 ALRFYGSFNVTVTGITIQNSP 284 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~ 284 (527)
+......++++.+||+|+|+-
T Consensus 199 ATv~v~ad~F~a~NLTf~Nta 219 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTL 219 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCC
Confidence 344556778888888888864
No 87
>PLN02197 pectinesterase
Probab=71.21 E-value=21 Score=40.33 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=22.4
Q ss_pred EEeeeeeEEEEEEEEecCCc----ceeee-cceeEEEEEEeeecC
Q 009748 266 RFYGSFNVTVTGITIQNSPQ----CHLKF-DNCIGVVVHDVSVSS 305 (527)
Q Consensus 266 ~~~~~~nv~I~giti~ns~~----~~i~~-~~c~nV~I~nv~I~s 305 (527)
.....+++..+||+|+|+.. ..+-+ ...+...+.+|.|.+
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G 403 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDG 403 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEe
Confidence 34467788888888888532 11222 234455555555554
No 88
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=71.06 E-value=37 Score=36.58 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=19.1
Q ss_pred eceeEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeee
Q 009748 374 SNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSE 414 (527)
Q Consensus 374 ~nI~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~ 414 (527)
.|=.|+|+..+++ .|+-+. |+|..++|+||+.++..-.+
T Consensus 311 tnHiidNi~~~~~-lGVG~~-~DG~~~yvsni~~~d~~g~G 349 (549)
T PF09251_consen 311 TNHIIDNILVRGS-LGVGIG-MDGKGGYVSNITVQDCAGAG 349 (549)
T ss_dssp ---EEEEEEEES--SSESCE-EECCS-EEEEEEEES-SSES
T ss_pred hhhhhhhhheecc-ceeeee-ecCCCceEeeEEeecccCCc
Confidence 3445666666655 232221 35566788888877766553
No 89
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=68.54 E-value=24 Score=40.00 Aligned_cols=111 Identities=12% Similarity=0.207 Sum_probs=56.7
Q ss_pred eeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCCCCccc
Q 009748 293 CIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKA 371 (527)
Q Consensus 293 c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~~~ 371 (527)
.+++..+|++|.+.........+.+. .++...+.+|.|....|.+..+++ .-++++|.+.+.-.+-+|.
T Consensus 361 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~-------- 430 (587)
T PLN02313 361 GERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN-------- 430 (587)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc--------
Confidence 44555666666654221122333332 356677777777777776666553 3466777776544444442
Q ss_pred eeeceeEeeeeeeccee--e-eEEeeeccCc--ceeeeEEeeeeEeeee
Q 009748 372 CVSNITVRDVMMHNTMN--G-VRIKTWQGGS--GSVQGVLFSNIQVSEV 415 (527)
Q Consensus 372 ~v~nI~v~Ni~i~~~~~--G-i~Ikt~~g~~--G~V~NI~f~Ni~v~~v 415 (527)
....|+||++.-... | ...-+-+++. ..-..+.|.|+++...
T Consensus 431 --a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 431 --AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred --eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 235566666653210 1 1111223321 2235677777777543
No 90
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=68.13 E-value=26 Score=31.86 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHHHhccccc
Q 009748 6 FRSLAFLFLIAFLVWSASFE 25 (527)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (527)
||.+.++||.++|.-|+.+.
T Consensus 1 MR~l~~~LL~L~LsGCS~l~ 20 (133)
T PRK10781 1 MRALPICLLALMLTGCSMLS 20 (133)
T ss_pred CchHHHHHHHHHHhhccccC
Confidence 45566666666666666544
No 91
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=68.01 E-value=21 Score=38.41 Aligned_cols=79 Identities=27% Similarity=0.315 Sum_probs=43.9
Q ss_pred cceEEEecc-cccCCceeEeccC-----------------------CceeEEeeeccCCCCcccccccCCCCccceeece
Q 009748 321 KDVLIHTSN-LACGDDCVSIQTG-----------------------CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNI 376 (527)
Q Consensus 321 ~nV~I~n~~-i~~gDD~Iai~sg-----------------------s~NV~I~n~~~~~g~GI~IGs~g~~~~~~~v~nI 376 (527)
=|...+|+. |.+.-|++.+++. -.|=.|+|.....+.|+-+|-.| ..+.|+||
T Consensus 264 YnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsni 340 (549)
T PF09251_consen 264 YNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSNI 340 (549)
T ss_dssp BS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEEE
T ss_pred eeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEeeE
Confidence 355555555 4566777777652 25667788877777888887654 45678888
Q ss_pred eEeeeeeecceeeeEEeeeccCcceeeeEEeeeeEeee
Q 009748 377 TVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSE 414 (527)
Q Consensus 377 ~v~Ni~i~~~~~Gi~Ikt~~g~~G~V~NI~f~Ni~v~~ 414 (527)
++++|. ..|+.++.. |-.|.||++-+
T Consensus 341 ~~~d~~----g~G~~~~~~--------~~~ftNitvId 366 (549)
T PF09251_consen 341 TVQDCA----GAGIFIRGT--------NKVFTNITVID 366 (549)
T ss_dssp EEES-S----SESEEEECC--------S-EEEEEEEES
T ss_pred Eeeccc----CCceEEeec--------CCceeeeEEEe
Confidence 888873 346665543 23566666544
No 92
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=67.90 E-value=20 Score=38.22 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=57.5
Q ss_pred ceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCC-ceeEeccCCceeEEeeeccCCCC-cccccccCCCCc
Q 009748 292 NCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD-DCVSIQTGCSNVYVHNVNCGPGH-GISIGSLGKDNT 369 (527)
Q Consensus 292 ~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gD-D~Iai~sgs~NV~I~n~~~~~g~-GI~IGs~g~~~~ 369 (527)
.-.+|++.|+.+...+ ...|+-+.+..+++|++|.+.+-. .|+... ....|++|+|.+.. ||.-.
T Consensus 119 gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~------- 185 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSR------- 185 (386)
T ss_pred eeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecC-------
Confidence 3457888889888753 345788888899999999998643 344443 57889999997633 55322
Q ss_pred cceeeceeEeeeeeecceeee
Q 009748 370 KACVSNITVRDVMMHNTMNGV 390 (527)
Q Consensus 370 ~~~v~nI~v~Ni~i~~~~~Gi 390 (527)
....+.|++|+|..+.-|+
T Consensus 186 --~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 186 --GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred --CcceEEeeheeeeheEEEE
Confidence 2345666777776665554
No 93
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=64.49 E-value=27 Score=37.12 Aligned_cols=17 Identities=0% Similarity=-0.027 Sum_probs=10.3
Q ss_pred CCCCCCcceeeeccccc
Q 009748 102 PPSHHSSVFNVKDFGAK 118 (527)
Q Consensus 102 ~~~~~~~~~~V~~~GA~ 118 (527)
+....++.--|..|++.
T Consensus 105 ~~l~~~~~~pv~a~~~~ 121 (376)
T PRK13855 105 RNEPRPEETPIFAYSSG 121 (376)
T ss_pred ccccccccCceEEeccC
Confidence 34445666678888543
No 94
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=63.51 E-value=42 Score=37.24 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=22.8
Q ss_pred EeeeeeEEEEEEEEecCCcc----eeee-cceeEEEEEEeeecC
Q 009748 267 FYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSS 305 (527)
Q Consensus 267 ~~~~~nv~I~giti~ns~~~----~i~~-~~c~nV~I~nv~I~s 305 (527)
....+++..+||+|+|.... .+-+ ...+.+.+.+|.|.+
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G 309 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAG 309 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec
Confidence 34567889999999987431 1211 234555555555554
No 95
>PRK09752 adhesin; Provisional
Probab=59.78 E-value=8.8 Score=46.17 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=4.5
Q ss_pred EEEEecceE
Q 009748 168 IIFQLDGTI 176 (527)
Q Consensus 168 i~l~~~Gtl 176 (527)
..+++.|.|
T Consensus 1011 y~vQLGGDl 1019 (1250)
T PRK09752 1011 STVQLSGDL 1019 (1250)
T ss_pred EEEeeccch
Confidence 445555544
No 96
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=55.03 E-value=27 Score=37.89 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=38.0
Q ss_pred ceEEEecccccCCceeEeccCCceeEEeeeccCCC----C-cccccccCCCCccceeeceeEeeeeeecceeeeEEee-e
Q 009748 322 DVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPG----H-GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKT-W 395 (527)
Q Consensus 322 nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g----~-GI~IGs~g~~~~~~~v~nI~v~Ni~i~~~~~Gi~Ikt-~ 395 (527)
+-+|++++|......+++..|..++.-.|..+..+ . ||+|-. .+..|.|=+|++++-.....++.+-. .
T Consensus 224 ~N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-----~~H~I~nNY~~gl~g~~~~~~~~v~ng~ 298 (425)
T PF14592_consen 224 DNTIRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-----EGHTIYNNYFEGLTGTRFRGALAVMNGV 298 (425)
T ss_dssp T-EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S-----BS-EEES-EEEESSB-TTTTSEE-EEE-
T ss_pred CceEeccEEEeccceEEEecCCCceEeccEEecCCCcCCCCceEEec-----CCcEEEcceeeccccceeecceeeccCC
Confidence 34455555555555555555544433333333322 1 455532 22344444455544333333343221 1
Q ss_pred cc----CcceeeeEEeeeeEeeeeeecEEEee
Q 009748 396 QG----GSGSVQGVLFSNIQVSEVQLPIVIDQ 423 (527)
Q Consensus 396 ~g----~~G~V~NI~f~Ni~v~~v~~pi~I~~ 423 (527)
+. +.-.|.|+.+.+.++-+...+|.+..
T Consensus 299 p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 299 PNSPLNRYDQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp -BSTTSTT---BSEEEES-EEES-SEEEESST
T ss_pred CCCCcccccccceeEEecceEEccCCceEEcc
Confidence 21 23457788888888777776666543
No 97
>PLN02773 pectinesterase
Probab=51.15 E-value=68 Score=33.51 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=43.3
Q ss_pred eEEEeeeeeEEEEEEEEecCCcc----eeee-cceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeE
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~----~i~~-~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Ia 338 (527)
+-.+..++++..+||+|+|+..- .+-+ ...+.+.+.+|+|.+. .|-+.... -+-.++||.|...=|=|.
T Consensus 95 aTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~-----QDTL~~~~-gr~yf~~c~IeG~VDFIF 168 (317)
T PLN02773 95 GTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW-----QDTLYLHY-GKQYLRDCYIEGSVDFIF 168 (317)
T ss_pred eEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc-----cceeEeCC-CCEEEEeeEEeecccEEe
Confidence 33455788999999999997321 1111 2345566666666642 22222221 235555666655444332
Q ss_pred eccCCceeEEeeeccCC
Q 009748 339 IQTGCSNVYVHNVNCGP 355 (527)
Q Consensus 339 i~sgs~NV~I~n~~~~~ 355 (527)
+ .-...+++|.+..
T Consensus 169 -G--~g~a~Fe~c~i~s 182 (317)
T PLN02773 169 -G--NSTALLEHCHIHC 182 (317)
T ss_pred -e--ccEEEEEeeEEEE
Confidence 2 2345566665543
No 98
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.82 E-value=14 Score=44.17 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 009748 66 NGKPKPK 72 (527)
Q Consensus 66 ~~~~~~~ 72 (527)
.++++.-
T Consensus 2 a~lppg~ 8 (2365)
T COG5178 2 ASLPPGN 8 (2365)
T ss_pred CCCCCCC
Confidence 3444433
No 99
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=50.78 E-value=71 Score=35.53 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=75.0
Q ss_pred cceeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCCCCc
Q 009748 291 DNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNT 369 (527)
Q Consensus 291 ~~c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~ 369 (527)
...+++..+|++|.+.........+.+. .+++..+.+|.|....|.+..+.+ .-++++|.+.+.-.+-+|.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~------ 338 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGN------ 338 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEecc------
Confidence 3456788888988875422233445543 478999999999999999887764 4588999998765666664
Q ss_pred cceeeceeEeeeeeeccee--e-eEEeeeccCc--ceeeeEEeeeeEeeeee
Q 009748 370 KACVSNITVRDVMMHNTMN--G-VRIKTWQGGS--GSVQGVLFSNIQVSEVQ 416 (527)
Q Consensus 370 ~~~v~nI~v~Ni~i~~~~~--G-i~Ikt~~g~~--G~V~NI~f~Ni~v~~v~ 416 (527)
....|+||++..... + -..-+.+++. ..-..+.|.|+++....
T Consensus 339 ----a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 ----AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ----cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 235788888864321 1 1112223321 23467889999997643
No 100
>PHA01732 proline-rich protein
Probab=46.86 E-value=25 Score=29.38 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.4
Q ss_pred chHHHHHHH
Q 009748 125 DTKAFEAAW 133 (527)
Q Consensus 125 dt~Aiq~Ai 133 (527)
|..+|.++-
T Consensus 43 ~apki~~~~ 51 (94)
T PHA01732 43 EAPKIREAQ 51 (94)
T ss_pred chhHHHHHH
Confidence 445555443
No 101
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=45.81 E-value=18 Score=39.36 Aligned_cols=12 Identities=25% Similarity=0.255 Sum_probs=5.0
Q ss_pred eeEEEEEEEEec
Q 009748 271 FNVTVTGITIQN 282 (527)
Q Consensus 271 ~nv~I~giti~n 282 (527)
++++|.|..-.|
T Consensus 144 ~g~~ItN~~~~n 155 (465)
T PF01690_consen 144 NGCTITNYKADN 155 (465)
T ss_pred cCcEEecccccC
Confidence 344444444333
No 102
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=42.15 E-value=1e+02 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHhccccccee
Q 009748 6 FRSLAFLFLIAFLVWSASFETCN 28 (527)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (527)
||+|+|+|-+.+|+-||+-..|+
T Consensus 1 MK~L~li~GLw~Li~CF~~~E~~ 23 (113)
T PF15621_consen 1 MKSLYLIFGLWALIGCFTPGESQ 23 (113)
T ss_pred CcceehHHHHHHHHHHccccccc
Confidence 78899998888888888766554
No 103
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=41.75 E-value=34 Score=29.85 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=10.7
Q ss_pred cchhhHHHHHHHHHHhcccc
Q 009748 5 SFRSLAFLFLIAFLVWSASF 24 (527)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (527)
-||.+.+|++.++|..|+.+
T Consensus 4 ~mk~~~~l~~~l~LS~~s~~ 23 (104)
T PRK14864 4 VMRRFASLLLTLLLSACSAL 23 (104)
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 35665555555555555443
No 104
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=36.87 E-value=56 Score=37.70 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=3.4
Q ss_pred hhhhccc
Q 009748 491 CWQAFGE 497 (527)
Q Consensus 491 c~~v~g~ 497 (527)
|-..+|+
T Consensus 699 ~~~y~Ge 705 (830)
T KOG1923|consen 699 VVEYFGE 705 (830)
T ss_pred HhHhhCC
Confidence 4445553
No 105
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=35.84 E-value=34 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=12.4
Q ss_pred ceeEeeeeeeccee-eeEEee
Q 009748 375 NITVRDVMMHNTMN-GVRIKT 394 (527)
Q Consensus 375 nI~v~Ni~i~~~~~-Gi~Ikt 394 (527)
+++|+|+++.+... |+.+..
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CEEEECCEEEeCCCCcEEEec
Confidence 56677777766654 666543
No 106
>PRK09752 adhesin; Provisional
Probab=35.52 E-value=40 Score=40.92 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=2.7
Q ss_pred Eeeceee
Q 009748 439 ALSGITY 445 (527)
Q Consensus 439 ~i~nItf 445 (527)
.+.+.+|
T Consensus 1193 ~mdG~t~ 1199 (1250)
T PRK09752 1193 EEDGSTI 1199 (1250)
T ss_pred EECCcEe
Confidence 3334333
No 107
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=33.02 E-value=1.9e+02 Score=24.95 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=6.5
Q ss_pred eeEEEEEEEEec
Q 009748 271 FNVTVTGITIQN 282 (527)
Q Consensus 271 ~nv~I~giti~n 282 (527)
.+++++|+++.+
T Consensus 45 ~~~~~~G~~~~~ 56 (146)
T smart00722 45 NDVRVDGITIGG 56 (146)
T ss_pred CCCEEECeEEEe
Confidence 344556666555
No 108
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.00 E-value=13 Score=33.39 Aligned_cols=20 Identities=20% Similarity=0.364 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcccccceecc
Q 009748 11 FLFLIAFLVWSASFETCNAR 30 (527)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (527)
|+++|+++++++.+..|.+|
T Consensus 5 ~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445443
No 109
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=31.70 E-value=77 Score=27.55 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=44.6
Q ss_pred eeeeeEEEEEEEEecCC---cceeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEe-cccccCCceeE
Q 009748 268 YGSFNVTVTGITIQNSP---QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHT-SNLACGDDCVS 338 (527)
Q Consensus 268 ~~~~nv~I~giti~ns~---~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n-~~i~~gDD~Ia 338 (527)
..+.+..|.+-.+.+.. .+++.+..+.+..+.+-.+. .. .. .+|+++....+..+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 55667777777777653 77888876666555555554 21 12 7899998888888887 55555556654
No 110
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.48 E-value=63 Score=27.62 Aligned_cols=6 Identities=33% Similarity=0.396 Sum_probs=2.5
Q ss_pred ceeccc
Q 009748 26 TCNARR 31 (527)
Q Consensus 26 ~~~~~~ 31 (527)
.+.||+
T Consensus 22 evaa~~ 27 (95)
T PF07172_consen 22 EVAARE 27 (95)
T ss_pred hhhhHH
Confidence 344443
No 111
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=28.28 E-value=66 Score=34.81 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=8.7
Q ss_pred eEEEeeeeeEEEE
Q 009748 264 ALRFYGSFNVTVT 276 (527)
Q Consensus 264 ~i~~~~~~nv~I~ 276 (527)
.+.+++|.|.+|.
T Consensus 355 svyIykC~~s~iq 367 (480)
T KOG2675|consen 355 SVYIYKCSNSTIQ 367 (480)
T ss_pred eEEEEeccceEEE
Confidence 5677777776653
No 112
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=28.17 E-value=1.2e+02 Score=31.38 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=42.1
Q ss_pred EeeeeeEEEEEEEEecCCcc------eeeecceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccCCceeEec
Q 009748 267 FYGSFNVTVTGITIQNSPQC------HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340 (527)
Q Consensus 267 ~~~~~nv~I~giti~ns~~~------~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~gDD~Iai~ 340 (527)
....+++++++|+|+|+... .+. ...+.+.+.+|.|.+ ..|-+.... .+..++||.|...-|=|.=
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g-----~QDTL~~~~-~r~y~~~c~IeG~vDFIfG- 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLG-----YQDTLYANG-GRQYFKNCYIEGNVDFIFG- 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE------STT-EEE-S-SEEEEES-EEEESEEEEEE-
T ss_pred cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcc-----ccceeeecc-ceeEEEeeEEEecCcEEEC-
Confidence 34678999999999986321 122 245667777777776 334444332 3566677777765554432
Q ss_pred cCCceeEEeeeccC
Q 009748 341 TGCSNVYVHNVNCG 354 (527)
Q Consensus 341 sgs~NV~I~n~~~~ 354 (527)
.....+++|.+.
T Consensus 155 --~~~a~f~~c~i~ 166 (298)
T PF01095_consen 155 --NGTAVFENCTIH 166 (298)
T ss_dssp --SSEEEEES-EEE
T ss_pred --CeeEEeeeeEEE
Confidence 235566666654
No 113
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=27.23 E-value=2.6e+02 Score=27.04 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=29.5
Q ss_pred ceEEEeccccc-CCceeEec--------cCCceeEEeeeccCC-CC--cccc-cccCCCCccceeeceeEeeeeeecce
Q 009748 322 DVLIHTSNLAC-GDDCVSIQ--------TGCSNVYVHNVNCGP-GH--GISI-GSLGKDNTKACVSNITVRDVMMHNTM 387 (527)
Q Consensus 322 nV~I~n~~i~~-gDD~Iai~--------sgs~NV~I~n~~~~~-g~--GI~I-Gs~g~~~~~~~v~nI~v~Ni~i~~~~ 387 (527)
+|.|-|.+|.. .--+|-+- +..+||.|+++.|.. |. .+.+ |.. ...++.|..|||+.|.+..
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI----v~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI----VTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeE----EeccccccEEEeeeecccc
Confidence 55666666653 12233331 124577777776654 11 1111 100 1123456677777776654
No 114
>PLN02634 probable pectinesterase
Probab=26.52 E-value=3.9e+02 Score=28.54 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=13.5
Q ss_pred EeeeeeEEEEEEEEecCC
Q 009748 267 FYGSFNVTVTGITIQNSP 284 (527)
Q Consensus 267 ~~~~~nv~I~giti~ns~ 284 (527)
....+++..+||+|+|+.
T Consensus 145 ~V~a~~F~a~niTf~Nta 162 (359)
T PLN02634 145 TVYANYFTARNISFKNTA 162 (359)
T ss_pred EEECCCeEEEeCeEEeCC
Confidence 345678888888888863
No 115
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.65 E-value=2.5e+02 Score=26.45 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=7.2
Q ss_pred chHHHHHHHHh
Q 009748 125 DTKAFEAAWAA 135 (527)
Q Consensus 125 dt~Aiq~Ai~~ 135 (527)
|..++|+++--
T Consensus 90 d~~~l~R~~~V 100 (163)
T PF06679_consen 90 DSPMLKRALYV 100 (163)
T ss_pred CccchhhhHHH
Confidence 55677877743
No 116
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=25.13 E-value=63 Score=34.97 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=4.6
Q ss_pred cccccccCC
Q 009748 31 RGRHWRHGR 39 (527)
Q Consensus 31 ~~~~~~~~~ 39 (527)
...+|-|++
T Consensus 130 kS~~FNhLs 138 (480)
T KOG2675|consen 130 KSPFFNHLS 138 (480)
T ss_pred CchHHHHHH
Confidence 344555554
No 117
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=24.99 E-value=1.2e+02 Score=31.78 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=14.5
Q ss_pred eecccccCCCCCcchHHHHHHHHhcc
Q 009748 112 VKDFGAKGNGVSDDTKAFEAAWAAAC 137 (527)
Q Consensus 112 V~~~GA~~dg~tDdt~Aiq~Ai~~a~ 137 (527)
|..=||.|+.-+--.+|+++|+.+-.
T Consensus 84 vvsa~a~G~~f~TIQaAvdaA~~~~~ 109 (405)
T COG4677 84 VVSAGAQGVTFTTIQAAVDAAIIKRT 109 (405)
T ss_pred EEecCCCccchHHHHHHHhhhcccCC
Confidence 34445555555556666777666543
No 118
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=23.54 E-value=3.6e+02 Score=31.28 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=29.0
Q ss_pred chHHHHHHHHhcccce--eeeEEecCceeEEEeeeccccccccceEEEEecc
Q 009748 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (527)
Q Consensus 125 dt~Aiq~Ai~~a~~~g--g~~V~iP~G~~yl~~~l~l~g~~~~sni~l~~~G 174 (527)
|-.-||+||+++.+.. .-+|+|-+| +|.- .+.+... +.+++|+.+|
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~--k~~i~l~Gdg 308 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAG-IYKE-YVQVNRS--MTHLVFIGDG 308 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCC-ceEE-EEEEcCC--CCcEEEEecC
Confidence 5778999998776532 347889999 7743 3444321 4566666554
No 119
>PF15240 Pro-rich: Proline-rich
Probab=23.18 E-value=48 Score=31.66 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHhccc
Q 009748 9 LAFLFLIAFLVWSAS 23 (527)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (527)
|.+||.+|||+|||.
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 556667777777775
No 120
>PLN02665 pectinesterase family protein
Probab=23.18 E-value=5e+02 Score=27.76 Aligned_cols=82 Identities=12% Similarity=0.013 Sum_probs=41.9
Q ss_pred eEEEeeeeeEEEEEEEEecCCc---------ceeee-cceeEEEEEEeeecCCCCCCCCCceeeecccceEEEecccccC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQ---------CHLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG 333 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~---------~~i~~-~~c~nV~I~nv~I~s~~~~~ntDGI~i~~s~nV~I~n~~i~~g 333 (527)
+-....++++..+||+|+|+.. ..+-+ ...+.+.+.||++.+. .|-+... .-+-..++|.|...
T Consensus 147 aTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~-----QDTL~~~-~gr~yf~~CyIeG~ 220 (366)
T PLN02665 147 ATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGF-----QDTLCDD-KGRHFFKDCYIEGT 220 (366)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccc-----cceeEeC-CCCEEEEeeEEeec
Confidence 3445678899999999999632 11111 2345556666666542 2222221 12345555665544
Q ss_pred CceeEeccCCceeEEeeeccC
Q 009748 334 DDCVSIQTGCSNVYVHNVNCG 354 (527)
Q Consensus 334 DD~Iai~sgs~NV~I~n~~~~ 354 (527)
=|=|. |.-...+++|.+.
T Consensus 221 VDFIF---G~g~a~fe~C~i~ 238 (366)
T PLN02665 221 VDFIF---GSGKSLYLNTELH 238 (366)
T ss_pred cceec---cccceeeEccEEE
Confidence 44332 1234455555554
No 121
>PLN02480 Probable pectinesterase
Probab=22.97 E-value=1.4e+02 Score=31.53 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=72.5
Q ss_pred eeEEEEEEeeecCCCC-----CCCCCceee-ecccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCC
Q 009748 293 CIGVVVHDVSVSSPGD-----SPNTDGIHL-QNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGK 366 (527)
Q Consensus 293 c~nV~I~nv~I~s~~~-----~~ntDGI~i-~~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~ 366 (527)
.++++++|++|.+... .....++.+ ..++++.+.||.|....|.+.... ..-+++||.+.+.-.+-+|.
T Consensus 131 a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~--- 205 (343)
T PLN02480 131 APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR--- 205 (343)
T ss_pred CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc---
Confidence 4578899999997521 112346666 357899999999999999887655 36788999998755666653
Q ss_pred CCccceeeceeEeeeeeecce------eeeEEeeeccC-cceeeeEEeeeeEeeee
Q 009748 367 DNTKACVSNITVRDVMMHNTM------NGVRIKTWQGG-SGSVQGVLFSNIQVSEV 415 (527)
Q Consensus 367 ~~~~~~v~nI~v~Ni~i~~~~------~Gi~Ikt~~g~-~G~V~NI~f~Ni~v~~v 415 (527)
....|+||++.... .|. |.. +++ ...-....|.|+++.+.
T Consensus 206 -------g~a~fe~C~i~s~~~~~~~~~G~-ITA-~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 -------GRSIFHNCEIFVIADRRVKIYGS-ITA-HNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred -------eeEEEEccEEEEecCCCCCCceE-EEc-CCCCCCCCCEEEEECCEEccc
Confidence 24678888887532 122 222 121 12335678888888763
No 122
>PLN02671 pectinesterase
Probab=22.81 E-value=5.1e+02 Score=27.63 Aligned_cols=20 Identities=35% Similarity=0.238 Sum_probs=15.0
Q ss_pred eEEEeeeeeEEEEEEEEecC
Q 009748 264 ALRFYGSFNVTVTGITIQNS 283 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns 283 (527)
+-.....+++..+||+|+|.
T Consensus 147 aTv~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 147 ASVTIESDYFCATGITFENT 166 (359)
T ss_pred EEEEEECCceEEEeeEEEcC
Confidence 33445678888899999887
No 123
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=22.09 E-value=5.8e+02 Score=28.71 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=20.1
Q ss_pred ccceEEEecccccCCceeEeccCCceeEEeeeccCCCCccccc
Q 009748 320 SKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG 362 (527)
Q Consensus 320 s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IG 362 (527)
++...+.+|.|....|.+...++ .-++++|.+.+.-.+-+|
T Consensus 340 gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG 380 (529)
T PLN02170 340 SDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFG 380 (529)
T ss_pred CCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceecc
Confidence 34555555555555555554432 334455555543333333
No 124
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=21.97 E-value=1.2e+03 Score=26.51 Aligned_cols=113 Identities=10% Similarity=0.201 Sum_probs=66.0
Q ss_pred ceeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCCCCcc
Q 009748 292 NCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTK 370 (527)
Q Consensus 292 ~c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~~ 370 (527)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+...++ .-++++|.+.+.-.+-+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSH--RQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCC--cEEEEeeEEecccceEccC-------
Confidence 456677778888765322233444443 467788888888888887776553 4577888887655555553
Q ss_pred ceeeceeEeeeeeecce--ee-eEEeeeccCc--ceeeeEEeeeeEeeeee
Q 009748 371 ACVSNITVRDVMMHNTM--NG-VRIKTWQGGS--GSVQGVLFSNIQVSEVQ 416 (527)
Q Consensus 371 ~~v~nI~v~Ni~i~~~~--~G-i~Ikt~~g~~--G~V~NI~f~Ni~v~~v~ 416 (527)
....|+||++.-.. .| -..-+-+++. ..-..+.|.|+++.+..
T Consensus 416 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 ---AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ---ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 23567777775321 11 0112223321 22356788888887643
No 125
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=21.80 E-value=3.8e+02 Score=28.72 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=3.2
Q ss_pred HHHHHHhc
Q 009748 14 LIAFLVWS 21 (527)
Q Consensus 14 ~~~~~~~~ 21 (527)
|+++++|+
T Consensus 42 ~~~~~~w~ 49 (376)
T PRK13855 42 LSLSLIWL 49 (376)
T ss_pred HHHHHHHh
Confidence 33344443
No 126
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=21.50 E-value=1.1e+02 Score=34.48 Aligned_cols=112 Identities=13% Similarity=0.208 Sum_probs=67.1
Q ss_pred cceeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeEeccCCceeEEeeeccCCCCcccccccCCCCc
Q 009748 291 DNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNT 369 (527)
Q Consensus 291 ~~c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Iai~sgs~NV~I~n~~~~~g~GI~IGs~g~~~~ 369 (527)
...+++..+|++|.+.........+.+. .++.+.+.||.|....|.+..+++ .-++++|.+.+.-.+-+|.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~------ 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN------ 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC------
Confidence 3456677777777765322223444443 367888888888888888777653 4567888887655666653
Q ss_pred cceeeceeEeeeeeecce------ee--eEEeeeccC--cceeeeEEeeeeEeeee
Q 009748 370 KACVSNITVRDVMMHNTM------NG--VRIKTWQGG--SGSVQGVLFSNIQVSEV 415 (527)
Q Consensus 370 ~~~v~nI~v~Ni~i~~~~------~G--i~Ikt~~g~--~G~V~NI~f~Ni~v~~v 415 (527)
....|+||++.-.. .| -.| +-+++ ...-..+.|.|++++..
T Consensus 399 ----a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 399 ----SAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred ----ceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecC
Confidence 24667777776321 11 122 22332 12345778888888653
No 127
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=21.36 E-value=1.2e+02 Score=33.77 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=4.9
Q ss_pred eEEecCc
Q 009748 143 IMVVPAE 149 (527)
Q Consensus 143 ~V~iP~G 149 (527)
-++||+|
T Consensus 363 e~Iv~~~ 369 (574)
T PF07462_consen 363 ENIVPEG 369 (574)
T ss_pred hhhhcCc
Confidence 4677877
No 128
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=20.99 E-value=1.4e+02 Score=34.00 Aligned_cols=10 Identities=30% Similarity=0.860 Sum_probs=4.5
Q ss_pred EEEEEEecCC
Q 009748 275 VTGITIQNSP 284 (527)
Q Consensus 275 I~giti~ns~ 284 (527)
+-|+=+++.|
T Consensus 600 LvGVC~~DeP 609 (807)
T KOG1094|consen 600 LLGVCVQDDP 609 (807)
T ss_pred EEeeeecCCc
Confidence 3344444444
No 129
>PLN02682 pectinesterase family protein
Probab=20.77 E-value=3.8e+02 Score=28.72 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=40.4
Q ss_pred eEEEeeeeeEEEEEEEEecCCcceeeecceeEEEEEEeeecCCCCCCCCCceeee-cccceEEEecccccCCceeEeccC
Q 009748 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTG 342 (527)
Q Consensus 264 ~i~~~~~~nv~I~giti~ns~~~~i~~~~c~nV~I~nv~I~s~~~~~ntDGI~i~-~s~nV~I~n~~i~~gDD~Iai~sg 342 (527)
+-.....+++..+||+|+|+....- ++ ......+.+. ..++..+.||.|....|.+....+
T Consensus 156 AT~~v~a~~F~a~nlTf~Nt~~~~~-----------------~g-~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~g 217 (369)
T PLN02682 156 ATFAVNSPYFIAKNITFKNTAPVPP-----------------PG-ALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLG 217 (369)
T ss_pred eEEEEECCCeEEEeeEEEcccccCC-----------------CC-CCcccEEEEEecCCcEEEEcceEeccccceEECCC
Confidence 3445567889999999998642100 00 0011122221 245566666666666565554432
Q ss_pred CceeEEeeeccCCCCccccc
Q 009748 343 CSNVYVHNVNCGPGHGISIG 362 (527)
Q Consensus 343 s~NV~I~n~~~~~g~GI~IG 362 (527)
.-+++||.+.+.-.+-+|
T Consensus 218 --Rqyf~~C~IeG~VDFIFG 235 (369)
T PLN02682 218 --RHYFKDCYIEGSVDFIFG 235 (369)
T ss_pred --CEEEEeeEEcccccEEec
Confidence 455666666554444443
No 130
>PLN02432 putative pectinesterase
Probab=20.31 E-value=4.1e+02 Score=27.49 Aligned_cols=17 Identities=24% Similarity=0.020 Sum_probs=13.3
Q ss_pred EeeeeeEEEEEEEEecC
Q 009748 267 FYGSFNVTVTGITIQNS 283 (527)
Q Consensus 267 ~~~~~nv~I~giti~ns 283 (527)
....+++..+||+|+|.
T Consensus 90 ~v~a~~f~a~nlt~~Nt 106 (293)
T PLN02432 90 SVLASDFVGRFLTIQNT 106 (293)
T ss_pred EEECCCeEEEeeEEEeC
Confidence 44567888888888886
Done!