Query 009749
Match_columns 527
No_of_seqs 357 out of 1608
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 16:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2164 Predicted E3 ubiquitin 100.0 1.9E-52 4.1E-57 439.5 8.3 144 23-177 106-249 (513)
2 PLN03208 E3 ubiquitin-protein 99.3 6.6E-12 1.4E-16 120.3 6.6 69 107-175 15-90 (193)
3 KOG0823 Predicted E3 ubiquitin 99.2 5.1E-12 1.1E-16 123.2 4.5 64 107-176 44-107 (230)
4 KOG0317 Predicted E3 ubiquitin 99.1 4.5E-11 9.7E-16 119.8 3.7 54 107-169 236-289 (293)
5 PF15227 zf-C3HC4_4: zinc fing 99.0 1.3E-10 2.9E-15 85.5 3.5 42 113-159 1-42 (42)
6 KOG0320 Predicted E3 ubiquitin 99.0 1.2E-10 2.7E-15 109.3 2.8 56 109-173 130-187 (187)
7 smart00504 Ubox Modified RING 98.9 1.2E-09 2.6E-14 86.3 4.6 52 111-171 2-53 (63)
8 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.5E-09 3.2E-14 78.4 3.2 38 113-159 1-39 (39)
9 COG5574 PEX10 RING-finger-cont 98.7 4.6E-09 9.9E-14 104.4 3.0 55 106-168 211-266 (271)
10 PF13920 zf-C3HC4_3: Zinc fing 98.7 7.9E-09 1.7E-13 78.5 3.5 46 110-164 2-48 (50)
11 PF00097 zf-C3HC4: Zinc finger 98.7 1.2E-08 2.5E-13 74.1 3.6 40 113-159 1-41 (41)
12 PF13639 zf-RING_2: Ring finge 98.7 7.3E-09 1.6E-13 76.6 2.2 40 112-160 2-44 (44)
13 PHA02929 N1R/p28-like protein; 98.7 1.3E-08 2.8E-13 101.4 4.2 47 109-164 173-227 (238)
14 TIGR00599 rad18 DNA repair pro 98.6 1.5E-08 3.2E-13 107.7 3.7 54 108-170 24-77 (397)
15 PHA02926 zinc finger-like prot 98.6 1.4E-08 3E-13 98.9 3.0 55 107-164 167-230 (242)
16 PF04564 U-box: U-box domain; 98.6 2.4E-08 5.2E-13 82.1 3.7 56 108-171 2-57 (73)
17 KOG0978 E3 ubiquitin ligase in 98.6 9.6E-09 2.1E-13 114.6 1.1 57 109-173 642-698 (698)
18 KOG0287 Postreplication repair 98.6 9.6E-09 2.1E-13 104.7 0.3 57 107-172 20-76 (442)
19 cd00162 RING RING-finger (Real 98.5 7.3E-08 1.6E-12 69.6 3.7 44 112-163 1-45 (45)
20 PF13445 zf-RING_UBOX: RING-ty 98.5 7.1E-08 1.5E-12 71.4 2.7 39 113-157 1-43 (43)
21 smart00184 RING Ring finger. E 98.4 1.8E-07 3.9E-12 65.2 3.7 39 113-159 1-39 (39)
22 PF14634 zf-RING_5: zinc-RING 98.4 2.3E-07 5E-12 68.8 3.0 41 112-161 1-44 (44)
23 TIGR00570 cdk7 CDK-activating 98.4 3E-07 6.5E-12 94.4 4.2 59 109-175 2-65 (309)
24 PF12678 zf-rbx1: RING-H2 zinc 98.3 3.1E-07 6.7E-12 75.6 2.9 40 112-160 21-73 (73)
25 COG5432 RAD18 RING-finger-cont 98.3 2.1E-07 4.6E-12 93.4 2.2 53 109-170 24-76 (391)
26 KOG2177 Predicted E3 ubiquitin 98.1 7.2E-07 1.6E-11 88.0 1.6 45 108-161 11-55 (386)
27 PF14835 zf-RING_6: zf-RING of 98.1 5.7E-07 1.2E-11 71.6 -0.0 51 109-170 6-57 (65)
28 COG5243 HRD1 HRD ubiquitin lig 98.1 2.3E-06 4.9E-11 88.6 3.0 64 90-165 270-346 (491)
29 PF12861 zf-Apc11: Anaphase-pr 98.0 5E-06 1.1E-10 70.1 2.8 51 109-165 20-83 (85)
30 KOG2879 Predicted E3 ubiquitin 97.9 6.8E-06 1.5E-10 82.4 3.3 50 108-164 237-287 (298)
31 KOG0311 Predicted E3 ubiquitin 97.9 1.4E-06 2.9E-11 90.0 -1.8 48 109-164 42-90 (381)
32 KOG1002 Nucleotide excision re 97.8 1.7E-06 3.7E-11 92.8 -3.6 56 107-166 533-588 (791)
33 KOG0802 E3 ubiquitin ligase [P 97.7 1.4E-05 2.9E-10 89.2 2.3 50 109-167 290-344 (543)
34 KOG4172 Predicted E3 ubiquitin 97.7 7.6E-06 1.6E-10 63.0 0.1 46 111-164 8-54 (62)
35 COG5540 RING-finger-containing 97.7 3.3E-05 7.2E-10 78.4 4.2 50 108-165 321-373 (374)
36 KOG0824 Predicted E3 ubiquitin 97.7 1.6E-05 3.6E-10 80.6 1.9 52 109-168 6-57 (324)
37 KOG4628 Predicted E3 ubiquitin 97.5 3.9E-05 8.4E-10 80.2 2.3 45 112-164 231-278 (348)
38 PF11789 zf-Nse: Zinc-finger o 97.5 5.9E-05 1.3E-09 59.3 1.9 43 109-158 10-53 (57)
39 KOG4159 Predicted E3 ubiquitin 97.3 0.0001 2.2E-09 78.8 2.4 49 108-165 82-130 (398)
40 KOG2660 Locus-specific chromos 97.3 7E-05 1.5E-09 77.1 0.5 50 109-167 14-64 (331)
41 COG5152 Uncharacterized conser 97.1 0.00019 4.1E-09 69.0 1.1 45 110-163 196-240 (259)
42 COG5222 Uncharacterized conser 97.1 0.00026 5.6E-09 71.8 2.0 80 71-161 225-318 (427)
43 KOG1813 Predicted E3 ubiquitin 97.0 0.00025 5.4E-09 72.0 0.9 46 110-164 241-286 (313)
44 KOG1785 Tyrosine kinase negati 96.8 0.00071 1.5E-08 71.1 2.5 51 110-167 369-419 (563)
45 KOG0828 Predicted E3 ubiquitin 96.7 0.00075 1.6E-08 72.6 2.1 48 109-164 570-634 (636)
46 KOG4692 Predicted E3 ubiquitin 96.6 0.0011 2.3E-08 68.9 2.6 51 106-165 418-468 (489)
47 KOG3039 Uncharacterized conser 96.6 0.0018 3.9E-08 64.4 3.8 54 109-171 220-277 (303)
48 KOG0297 TNF receptor-associate 96.6 0.00092 2E-08 71.8 1.8 54 108-170 19-73 (391)
49 KOG0804 Cytoplasmic Zn-finger 96.6 0.00073 1.6E-08 72.1 0.9 45 109-164 174-222 (493)
50 KOG4265 Predicted E3 ubiquitin 96.5 0.0016 3.5E-08 68.0 3.1 48 108-164 288-336 (349)
51 KOG1001 Helicase-like transcri 96.5 0.0007 1.5E-08 77.1 0.2 52 111-170 455-506 (674)
52 KOG0827 Predicted E3 ubiquitin 96.3 0.0021 4.5E-08 67.5 2.5 53 111-169 5-61 (465)
53 PF04641 Rtf2: Rtf2 RING-finge 96.3 0.0043 9.2E-08 63.1 4.3 53 108-170 111-167 (260)
54 KOG1571 Predicted E3 ubiquitin 96.2 0.0022 4.8E-08 67.0 2.0 45 108-164 303-347 (355)
55 KOG0826 Predicted E3 ubiquitin 96.2 0.0015 3.3E-08 67.3 0.8 55 105-168 295-350 (357)
56 PF11793 FANCL_C: FANCL C-term 96.2 0.0011 2.5E-08 54.1 -0.1 56 110-165 2-67 (70)
57 KOG0825 PHD Zn-finger protein 96.2 0.0049 1.1E-07 69.6 4.5 51 108-167 121-174 (1134)
58 KOG4275 Predicted E3 ubiquitin 96.1 0.0014 3.1E-08 66.5 0.1 42 110-164 300-342 (350)
59 KOG1039 Predicted E3 ubiquitin 96.1 0.0031 6.6E-08 66.4 2.5 54 108-163 159-220 (344)
60 KOG1645 RING-finger-containing 96.1 0.0019 4.1E-08 68.3 1.0 56 109-171 3-63 (463)
61 COG5219 Uncharacterized conser 95.8 0.0032 6.9E-08 72.2 1.0 49 109-164 1468-1523(1525)
62 smart00744 RINGv The RING-vari 95.5 0.014 3.1E-07 44.4 3.4 42 112-160 1-49 (49)
63 KOG4739 Uncharacterized protei 95.5 0.004 8.7E-08 62.0 0.2 46 111-167 4-51 (233)
64 KOG1734 Predicted RING-contain 95.2 0.0051 1.1E-07 62.0 -0.0 55 109-170 223-287 (328)
65 KOG1814 Predicted E3 ubiquitin 94.5 0.019 4E-07 61.1 1.8 51 109-160 183-236 (445)
66 KOG1493 Anaphase-promoting com 94.2 0.02 4.4E-07 47.4 1.0 47 112-164 22-81 (84)
67 COG5194 APC11 Component of SCF 94.1 0.043 9.3E-07 45.8 2.9 30 126-164 52-81 (88)
68 PF07800 DUF1644: Protein of u 94.1 0.058 1.3E-06 50.7 4.1 58 109-166 1-93 (162)
69 KOG2817 Predicted E3 ubiquitin 94.1 0.033 7.1E-07 59.1 2.7 59 107-171 331-392 (394)
70 KOG3800 Predicted E3 ubiquitin 94.0 0.038 8.2E-07 56.5 2.8 55 112-174 2-61 (300)
71 PF05290 Baculo_IE-1: Baculovi 93.6 0.064 1.4E-06 49.0 3.3 53 108-166 78-134 (140)
72 PF14570 zf-RING_4: RING/Ubox 93.4 0.053 1.2E-06 41.2 2.1 43 113-163 1-47 (48)
73 PF14447 Prok-RING_4: Prokaryo 93.3 0.041 9E-07 42.9 1.3 47 110-167 7-53 (55)
74 KOG4185 Predicted E3 ubiquitin 93.1 0.057 1.2E-06 55.5 2.5 46 110-163 3-54 (296)
75 COG5220 TFB3 Cdk activating ki 92.7 0.036 7.8E-07 55.1 0.3 58 109-174 9-74 (314)
76 KOG4367 Predicted Zn-finger pr 92.6 0.061 1.3E-06 57.5 1.9 36 108-143 2-37 (699)
77 KOG2932 E3 ubiquitin ligase in 92.6 0.036 7.8E-07 57.0 0.2 60 94-164 71-134 (389)
78 KOG4362 Transcriptional regula 92.6 0.022 4.8E-07 64.4 -1.5 62 102-169 13-74 (684)
79 COG5175 MOT2 Transcriptional r 92.3 0.11 2.5E-06 54.0 3.3 58 108-173 12-73 (480)
80 KOG3039 Uncharacterized conser 92.2 0.1 2.2E-06 52.2 2.7 36 109-144 42-77 (303)
81 COG5236 Uncharacterized conser 92.2 0.092 2E-06 54.8 2.5 48 108-162 59-106 (493)
82 KOG3002 Zn finger protein [Gen 91.2 0.14 2.9E-06 53.3 2.6 45 108-164 46-91 (299)
83 KOG1941 Acetylcholine receptor 90.0 0.11 2.5E-06 55.0 0.7 47 109-162 364-414 (518)
84 PHA03096 p28-like protein; Pro 90.0 0.17 3.6E-06 52.3 1.9 35 111-145 179-221 (284)
85 KOG4445 Uncharacterized conser 89.7 0.052 1.1E-06 55.7 -2.0 56 109-164 114-186 (368)
86 KOG3161 Predicted E3 ubiquitin 89.2 0.14 3.1E-06 57.2 0.8 32 111-142 12-47 (861)
87 KOG1815 Predicted E3 ubiquitin 88.6 0.41 8.9E-06 52.4 3.8 63 108-171 68-133 (444)
88 KOG1952 Transcription factor N 87.8 0.85 1.8E-05 52.8 5.6 56 105-162 186-245 (950)
89 KOG2930 SCF ubiquitin ligase, 87.5 0.35 7.6E-06 42.4 1.9 27 127-162 80-106 (114)
90 PF10367 Vps39_2: Vacuolar sor 87.5 0.18 3.9E-06 43.4 0.1 31 108-138 76-108 (109)
91 PF02891 zf-MIZ: MIZ/SP-RING z 87.2 0.17 3.7E-06 38.7 -0.1 47 111-162 3-50 (50)
92 KOG0298 DEAD box-containing he 87.1 0.16 3.4E-06 60.9 -0.5 43 109-160 1152-1195(1394)
93 KOG1812 Predicted E3 ubiquitin 86.6 0.34 7.3E-06 52.2 1.6 58 109-169 145-208 (384)
94 KOG3579 Predicted E3 ubiquitin 86.6 0.42 9E-06 48.9 2.2 55 109-163 267-327 (352)
95 COG5109 Uncharacterized conser 86.4 0.41 8.9E-06 49.6 2.0 55 109-169 335-392 (396)
96 KOG1428 Inhibitor of type V ad 84.0 0.56 1.2E-05 56.7 1.9 61 109-169 3485-3549(3738)
97 PF10377 ATG11: Autophagy-rela 83.4 3.7 8E-05 37.6 6.6 66 431-506 62-127 (129)
98 KOG3970 Predicted E3 ubiquitin 83.2 1.4 2.9E-05 43.9 3.9 56 107-163 47-104 (299)
99 KOG2114 Vacuolar assembly/sort 81.7 0.79 1.7E-05 53.1 1.9 40 110-161 840-880 (933)
100 PF03854 zf-P11: P-11 zinc fin 80.4 0.78 1.7E-05 34.8 0.9 35 122-165 12-47 (50)
101 KOG2034 Vacuolar sorting prote 80.2 0.86 1.9E-05 53.0 1.6 36 109-144 816-853 (911)
102 KOG0825 PHD Zn-finger protein 79.4 1.1 2.5E-05 51.4 2.2 51 110-163 96-153 (1134)
103 PF08746 zf-RING-like: RING-li 77.9 2.3 4.9E-05 31.5 2.7 40 113-159 1-43 (43)
104 PHA02825 LAP/PHD finger-like p 77.7 2.7 5.8E-05 39.8 3.8 48 108-163 6-58 (162)
105 PF10272 Tmpp129: Putative tra 76.8 1.6 3.5E-05 46.5 2.3 41 128-168 311-355 (358)
106 PF05883 Baculo_RING: Baculovi 76.3 1.1 2.3E-05 41.3 0.7 34 109-142 25-67 (134)
107 KOG3113 Uncharacterized conser 75.3 2.8 6.2E-05 42.4 3.4 51 109-170 110-164 (293)
108 KOG1940 Zn-finger protein [Gen 75.0 1.6 3.5E-05 44.9 1.6 44 109-161 157-204 (276)
109 KOG1100 Predicted E3 ubiquitin 72.9 1.8 3.9E-05 42.8 1.4 39 113-164 161-200 (207)
110 COG5183 SSM4 Protein involved 69.3 3.8 8.3E-05 47.5 3.1 73 109-196 11-90 (1175)
111 PF07191 zinc-ribbons_6: zinc- 69.1 0.25 5.4E-06 40.5 -4.5 40 111-164 2-41 (70)
112 PHA02862 5L protein; Provision 68.2 5.1 0.00011 37.4 3.2 47 111-165 3-54 (156)
113 KOG3268 Predicted E3 ubiquitin 65.8 4.2 9.2E-05 39.2 2.2 57 109-165 164-229 (234)
114 PF10571 UPF0547: Uncharacteri 65.0 3.3 7.2E-05 27.5 0.9 21 112-132 2-24 (26)
115 PF12906 RINGv: RING-variant d 63.5 4.5 9.8E-05 30.4 1.6 40 113-159 1-47 (47)
116 KOG3899 Uncharacterized conser 58.2 7.4 0.00016 40.3 2.5 45 128-172 325-373 (381)
117 TIGR01562 FdhE formate dehydro 56.8 2.4 5.2E-05 44.3 -1.3 44 110-162 184-233 (305)
118 KOG2068 MOT2 transcription fac 55.6 14 0.0003 38.9 4.0 47 109-164 248-298 (327)
119 PRK04023 DNA polymerase II lar 55.2 13 0.00028 44.5 4.1 55 109-174 625-684 (1121)
120 smart00064 FYVE Protein presen 54.4 4.3 9.4E-05 32.3 0.1 35 109-143 9-47 (68)
121 KOG1729 FYVE finger containing 52.8 3.2 6.9E-05 43.1 -1.1 59 105-165 163-226 (288)
122 COG0068 HypF Hydrogenase matur 50.9 8 0.00017 44.6 1.5 56 107-163 98-183 (750)
123 KOG3842 Adaptor protein Pellin 50.9 15 0.00033 38.4 3.4 57 108-165 339-415 (429)
124 KOG3799 Rab3 effector RIM1 and 49.0 12 0.00026 34.6 2.0 35 105-143 60-94 (169)
125 KOG2979 Protein involved in DN 48.9 9 0.0002 39.0 1.4 44 109-159 175-219 (262)
126 PF04216 FdhE: Protein involve 47.6 2.2 4.8E-05 44.0 -3.3 44 110-162 172-220 (290)
127 KOG1812 Predicted E3 ubiquitin 47.1 9.1 0.0002 41.3 1.2 34 110-143 306-344 (384)
128 KOG2231 Predicted E3 ubiquitin 43.2 18 0.0004 41.6 2.8 50 112-164 2-52 (669)
129 PRK03564 formate dehydrogenase 42.9 7.3 0.00016 40.8 -0.3 44 109-161 186-234 (309)
130 PRK14714 DNA polymerase II lar 42.5 11 0.00024 46.0 1.0 59 110-174 667-730 (1337)
131 PF10497 zf-4CXXC_R1: Zinc-fin 41.1 19 0.00042 31.8 2.1 36 129-164 37-72 (105)
132 KOG1356 Putative transcription 41.1 9.8 0.00021 44.5 0.3 32 110-141 229-262 (889)
133 PF04710 Pellino: Pellino; In 40.5 9.2 0.0002 41.2 0.0 50 108-163 275-338 (416)
134 PF04710 Pellino: Pellino; In 38.1 11 0.00023 40.7 0.0 56 110-165 328-402 (416)
135 KOG0309 Conserved WD40 repeat- 38.1 24 0.00052 41.0 2.7 21 125-145 1045-1065(1081)
136 cd00065 FYVE FYVE domain; Zinc 38.0 21 0.00045 27.2 1.6 33 111-143 3-39 (57)
137 KOG2169 Zn-finger transcriptio 37.5 21 0.00045 41.2 2.2 55 110-169 306-361 (636)
138 KOG1842 FYVE finger-containing 37.4 14 0.0003 40.4 0.7 35 105-139 175-213 (505)
139 KOG1815 Predicted E3 ubiquitin 37.0 14 0.00031 40.5 0.8 32 111-142 164-198 (444)
140 PF01363 FYVE: FYVE zinc finge 36.5 7.5 0.00016 31.0 -1.1 33 109-141 8-44 (69)
141 TIGR00143 hypF [NiFe] hydrogen 36.1 20 0.00043 41.9 1.7 56 107-163 65-150 (711)
142 COG5627 MMS21 DNA repair prote 33.4 23 0.0005 35.7 1.5 43 109-158 188-231 (275)
143 KOG0289 mRNA splicing factor [ 33.3 38 0.00082 37.1 3.1 53 112-173 2-55 (506)
144 KOG3842 Adaptor protein Pellin 32.9 23 0.0005 37.2 1.4 47 109-161 289-349 (429)
145 KOG1829 Uncharacterized conser 32.5 16 0.00035 41.4 0.3 40 109-160 510-557 (580)
146 PF05605 zf-Di19: Drought indu 31.7 66 0.0014 24.5 3.5 12 110-121 2-13 (54)
147 PF12660 zf-TFIIIC: Putative z 30.8 4 8.7E-05 35.6 -3.8 47 111-163 15-65 (99)
148 KOG0827 Predicted E3 ubiquitin 30.4 5 0.00011 43.0 -3.9 49 110-167 196-248 (465)
149 KOG4718 Non-SMC (structural ma 29.6 27 0.00058 34.7 1.2 44 110-162 181-225 (235)
150 KOG1819 FYVE finger-containing 29.0 21 0.00045 39.5 0.4 32 106-137 897-932 (990)
151 KOG4185 Predicted E3 ubiquitin 28.6 11 0.00023 38.7 -1.8 44 111-162 208-265 (296)
152 PF10235 Cript: Microtubule-as 28.4 30 0.00065 29.9 1.2 37 110-164 44-80 (90)
153 COG3813 Uncharacterized protei 28.3 38 0.00082 28.1 1.7 36 124-170 23-58 (84)
154 PF06906 DUF1272: Protein of u 27.6 55 0.0012 25.9 2.4 46 111-167 6-55 (57)
155 KOG1818 Membrane trafficking a 27.4 17 0.00037 41.5 -0.6 66 88-164 153-222 (634)
156 COG4647 AcxC Acetone carboxyla 27.0 30 0.00064 31.9 0.9 38 94-135 45-82 (165)
157 PF15616 TerY-C: TerY-C metal 25.7 42 0.00091 31.0 1.7 41 109-164 76-116 (131)
158 COG3058 FdhE Uncharacterized p 25.3 46 0.001 34.5 2.1 44 109-161 184-233 (308)
159 KOG2789 Putative Zn-finger pro 24.8 32 0.00069 37.2 0.8 33 110-142 74-108 (482)
160 KOG1814 Predicted E3 ubiquitin 24.2 29 0.00063 37.7 0.4 33 108-140 366-404 (445)
161 KOG0883 Cyclophilin type, U bo 23.9 1.2E+02 0.0026 33.0 4.8 74 110-192 40-113 (518)
162 KOG0801 Predicted E3 ubiquitin 23.4 26 0.00057 33.4 -0.1 27 107-133 174-203 (205)
163 KOG3726 Uncharacterized conser 22.2 48 0.001 38.2 1.6 38 111-160 655-696 (717)
164 PF14353 CpXC: CpXC protein 21.8 64 0.0014 28.9 2.1 48 111-164 2-49 (128)
165 smart00647 IBR In Between Ring 21.1 15 0.00032 28.3 -1.9 14 127-140 45-58 (64)
166 PRK14559 putative protein seri 21.1 74 0.0016 36.8 2.9 39 111-166 2-40 (645)
167 KOG3053 Uncharacterized conser 20.3 64 0.0014 33.1 1.9 55 108-163 18-81 (293)
168 PRK11088 rrmA 23S rRNA methylt 20.1 56 0.0012 33.0 1.5 11 111-121 3-13 (272)
No 1
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-52 Score=439.52 Aligned_cols=144 Identities=45% Similarity=0.760 Sum_probs=120.7
Q ss_pred CCCccccCCcccccCcccCCCCCCCCCCCCCCcCCCCCCCCCCccccccccceEeecCCCCCCCCCCCccccCcchhhhh
Q 009749 23 SGRRAQTISGNHLLNFQYDPISRPQYRMPPPPARRQRKIRPYNKDLFLQANYKFVVLDTGDHAPESMDPDKMLQWEDIIC 102 (527)
Q Consensus 23 ~grk~q~~s~nHLLnF~~~~~~~~~~~~~~~~~r~~~~~~~~~ke~flqaN~rFvV~~~~dy~~~~~dpd~~v~w~~I~~ 102 (527)
.|+++|+ |+||||||+|.+++ +..+...+ +++.+..+.+.+ +|++|||+|||+ .|+|..+..|||.+++|++|.+
T Consensus 106 ~~~a~~v-s~nhllnf~~~~~~-~~~q~~~p-~~~~~~~~~~~q-~f~~any~fvv~-~gd~~~qn~dpD~p~~~e~i~q 180 (513)
T KOG2164|consen 106 VNLANQV-SLNHLLNFQYAPIE-NSHQSSSP-PRRNRRRDEREQ-TFLNANYRFVVD-EGDYVLQNTDPDAPVDWEDIFQ 180 (513)
T ss_pred hhhhhhh-hhhhhhheeecccc-hhhccCCC-ccccccccccch-hhhccchheeec-ccchhhhccCCccccchHHhhh
Confidence 3678876 99999999999987 44433332 232222222222 999999999999 9999999999999999999999
Q ss_pred hhcCCCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeeccc
Q 009749 103 VRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVR 177 (527)
Q Consensus 103 v~~~~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~ 177 (527)
+.+.+ ...|||||+++..|++|.|||+||++||++||..+. ..++..||+|+..|..++|++|.+++.+
T Consensus 181 v~~~t--~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~----~~~~~~CPiC~s~I~~kdl~pv~~e~~q 249 (513)
T KOG2164|consen 181 VYGST--DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA----IKGPCSCPICRSTITLKDLLPVFIEDDQ 249 (513)
T ss_pred hhcCc--CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc----ccCCccCCchhhhccccceeeeeecccc
Confidence 87766 899999999999999999999999999999999872 2368999999999999999999988753
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.26 E-value=6.6e-12 Score=120.35 Aligned_cols=69 Identities=29% Similarity=0.631 Sum_probs=55.3
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCC-------CCCCCcCCCCCCcccccCCCceeEEeec
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDED-------YKGDCFKRCPLCFVMISSKELYTIHIEN 175 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~-------~k~~~~~~CPlCr~~i~~~~L~~v~~~~ 175 (527)
..+.+.||||++.+.+|++|.|||.||+.||..|+...... ........||+|+..+...++.+++...
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 44678999999999999999999999999999998743210 0011347999999999999999987654
No 3
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.1e-12 Score=123.18 Aligned_cols=64 Identities=31% Similarity=0.710 Sum_probs=56.8
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeecc
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENV 176 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~ 176 (527)
....+.|.|||+...+|++|.|||.|||+||.+|+.... ....||+|+..+..+.+.+++-...
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~------~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP------NSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC------CCeeCCccccccccceEEeeeccCC
Confidence 345789999999999999999999999999999999764 3478999999999999999887654
No 4
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.5e-11 Score=119.81 Aligned_cols=54 Identities=35% Similarity=0.846 Sum_probs=47.5
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
.+....|.|||+...+|..|+|||+|||.||+.|.... ..||+||..+++.++.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek---------~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK---------AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc---------cCCCcccccCCCccee
Confidence 34568999999999999999999999999999999853 5799999999887754
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.05 E-value=1.3e-10 Score=85.49 Aligned_cols=42 Identities=36% Similarity=0.786 Sum_probs=32.3
Q ss_pred ccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 113 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 113 CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
||||++.+.+|+.++|||+||..||.+|+..... ....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~-----~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG-----SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS-----ST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC-----cCCCCcCC
Confidence 8999999999999999999999999999986431 12689988
No 6
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.2e-10 Score=109.29 Aligned_cols=56 Identities=38% Similarity=0.798 Sum_probs=47.8
Q ss_pred CcccccccCcCCC--CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 009749 109 LSVQCPICLEYPL--CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (527)
Q Consensus 109 e~~~CPICle~~~--~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (527)
..+.|||||+.+. .|+-|+|||+||..||...++.. .+||+|+..|..++++.|++
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~---------~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT---------NKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhC---------CCCCCcccccchhhheeccC
Confidence 4589999998875 45569999999999999999853 79999999999999888753
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.92 E-value=1.2e-09 Score=86.27 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=46.7
Q ss_pred ccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 111 ~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
+.||||.+.+.+|++++|||+||..||..|+.. ...||+|+.++...++.+.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---------~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS---------HGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---------CCCCCCCcCCCChhhceeC
Confidence 579999999999999999999999999999975 2589999999988887763
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.87 E-value=1.5e-09 Score=78.39 Aligned_cols=38 Identities=50% Similarity=1.213 Sum_probs=32.8
Q ss_pred ccccCcCCCCc-eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 113 CPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 113 CPICle~~~~P-~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
||||++.+.+| ++++|||+||..||.+|++. . .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~--------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-N--------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-T--------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-c--------CCCcCC
Confidence 89999999999 58999999999999999985 2 689988
No 9
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.6e-09 Score=104.37 Aligned_cols=55 Identities=35% Similarity=0.834 Sum_probs=45.7
Q ss_pred CCCCcccccccCcCCCCceEcCCCCcccHHHHHH-HHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 009749 106 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQ-YLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~-~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (527)
.....+.|+||++.+..|..++|||+|||.||+. |-.. ..-.||+||+.+..+++
T Consensus 211 ip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~--------k~~~CplCRak~~pk~v 266 (271)
T COG5574 211 IPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK--------KYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccccceeeeecccCCcccccccchhhHHHHHHHHHhh--------ccccCchhhhhccchhh
Confidence 3356789999999999999999999999999999 5443 23569999998877664
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.73 E-value=7.9e-09 Score=78.55 Aligned_cols=46 Identities=39% Similarity=0.895 Sum_probs=39.7
Q ss_pred cccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 110 SVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
+..|+||++.+..+++++|||. ||..|+.+|+.. ..+||+||.++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR---------KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT---------TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc---------CCCCCcCChhhc
Confidence 4689999999999999999999 999999999983 279999999874
No 11
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.71 E-value=1.2e-08 Score=74.12 Aligned_cols=40 Identities=45% Similarity=1.016 Sum_probs=36.1
Q ss_pred ccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 113 CPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 113 CPICle~~~~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
|+||++.+..+. +++|||.||..||.+|+... ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~-------~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS-------GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT-------SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc-------CCccCCcC
Confidence 899999999999 89999999999999999962 24789998
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.69 E-value=7.3e-09 Score=76.58 Aligned_cols=40 Identities=40% Similarity=0.876 Sum_probs=33.1
Q ss_pred cccccCcCCC---CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 009749 112 QCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (527)
Q Consensus 112 ~CPICle~~~---~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (527)
.|+||++.+. ..+.++|||+||..||..|+... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---------SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---------CcCCccC
Confidence 6999998763 45578999999999999999853 5999996
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.68 E-value=1.3e-08 Score=101.38 Aligned_cols=47 Identities=28% Similarity=0.692 Sum_probs=38.8
Q ss_pred CcccccccCcCCCC--------ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~--------P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....||||++.+.. +++++|||+||..||.+|+.. ...||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---------~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---------KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---------CCCCCCCCCEee
Confidence 46799999997654 356799999999999999874 268999998764
No 14
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=1.5e-08 Score=107.68 Aligned_cols=54 Identities=35% Similarity=0.717 Sum_probs=46.7
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
...+.|+||++.+.+|++++|||.||..||..|+.. ...||+|+..+....+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~---------~~~CP~Cr~~~~~~~Lr~ 77 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN---------QPKCPLCRAEDQESKLRS 77 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC---------CCCCCCCCCccccccCcc
Confidence 356899999999999999999999999999999974 258999999987666654
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.64 E-value=1.4e-08 Score=98.90 Aligned_cols=55 Identities=29% Similarity=0.618 Sum_probs=41.3
Q ss_pred CCCcccccccCcCCCC---------ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 107 NPLSVQCPICLEYPLC---------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 107 ~~e~~~CPICle~~~~---------P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
...+..|+||++.... +++.+|+|.||+.||..|.....+.+ ....||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~---~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETG---ASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccC---cCCcCCCCcceee
Confidence 3467899999987432 34679999999999999998643211 2468999998764
No 16
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.63 E-value=2.4e-08 Score=82.07 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=45.2
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
++.+.||||.+.+.+|++++|||+|+..||..|+... ...||+|+.++...+|.+.
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~--------~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN--------GGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT--------SSB-TTT-SB-SGGGSEE-
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC--------CCCCCCCCCcCCcccceEC
Confidence 5678999999999999999999999999999999862 3799999999998888774
No 17
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=9.6e-09 Score=114.61 Aligned_cols=57 Identities=26% Similarity=0.638 Sum_probs=51.9
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (527)
.-+.||+|-.-+.+.+++.|||+||..|+...+... .++||.|..+|..+|+++|++
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR--------qRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR--------QRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh--------cCCCCCCCCCCCcccccccCC
Confidence 457999999999999999999999999999999874 489999999999999998763
No 18
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.59 E-value=9.6e-09 Score=104.74 Aligned_cols=57 Identities=35% Similarity=0.757 Sum_probs=50.7
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEE
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 172 (527)
....+.|-||.++|..|++|+|||.||.-||..|+... ..||.|...+...+|+...
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~---------p~CP~C~~~~~Es~Lr~n~ 76 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK---------PQCPTCCVTVTESDLRNNR 76 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC---------CCCCceecccchhhhhhhh
Confidence 34568999999999999999999999999999999853 7899999999998888653
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.54 E-value=7.3e-08 Score=69.60 Aligned_cols=44 Identities=48% Similarity=1.044 Sum_probs=36.2
Q ss_pred cccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 112 QCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 112 ~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
.|+||++.+..+..+ +|||.||..|+..|+... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG--------KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC--------cCCCCCCCCcC
Confidence 499999998777755 599999999999999852 26899998753
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.50 E-value=7.1e-08 Score=71.43 Aligned_cols=39 Identities=38% Similarity=0.921 Sum_probs=23.9
Q ss_pred ccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCC
Q 009749 113 CPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCP 157 (527)
Q Consensus 113 CPICle~~~~----P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CP 157 (527)
||||.+ +.. |++++|||+||..||.+++..+.. ...+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~-----~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDR-----NRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S------S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCC-----CeeeCc
Confidence 999999 877 899999999999999999986421 247887
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.45 E-value=1.8e-07 Score=65.20 Aligned_cols=39 Identities=49% Similarity=1.163 Sum_probs=34.5
Q ss_pred ccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 113 CPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 113 CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
|+||++....+++++|||.||..|+..|+... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG--------NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC--------cCCCCCC
Confidence 89999998899999999999999999999822 3679987
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.38 E-value=2.3e-07 Score=68.79 Aligned_cols=41 Identities=44% Similarity=1.008 Sum_probs=34.0
Q ss_pred cccccCcCC---CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 112 QCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 112 ~CPICle~~---~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
.|+||++.+ ..+.+++|||+||..|+.... . ....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~-------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--G-------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--C-------CCCCCcCCCC
Confidence 499999887 357799999999999999887 1 2479999974
No 23
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=3e-07 Score=94.42 Aligned_cols=59 Identities=24% Similarity=0.541 Sum_probs=46.2
Q ss_pred CcccccccCc-CCCCce---Ec-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeec
Q 009749 109 LSVQCPICLE-YPLCPQ---IT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIEN 175 (527)
Q Consensus 109 e~~~CPICle-~~~~P~---it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~ 175 (527)
++..||||.. .+.+|. ++ .|||.||..|+..++..+ ...||.|+.++..+.+++..+.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~--------~~~CP~C~~~lrk~~fr~q~F~D 65 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------SGSCPECDTPLRKNNFRVQLFED 65 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC--------CCCCCCCCCccchhhcccccccc
Confidence 3468999996 355554 33 699999999999988643 26899999999999988765543
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.33 E-value=3.1e-07 Score=75.60 Aligned_cols=40 Identities=48% Similarity=0.956 Sum_probs=31.3
Q ss_pred cccccCcCCCC------------c-eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 009749 112 QCPICLEYPLC------------P-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (527)
Q Consensus 112 ~CPICle~~~~------------P-~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (527)
.|+||++.+.. + ....|||.|+..||.+|+... ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN---------NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS---------SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC---------CcCCCCC
Confidence 49999998722 2 245899999999999999743 5999997
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.32 E-value=2.1e-07 Score=93.36 Aligned_cols=53 Identities=32% Similarity=0.536 Sum_probs=46.9
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
..+.|-||-+.+..|..|+|||.||.-||.+|+... ..||+||.......++.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q---------p~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ---------PFCPVCREDPCESRLRG 76 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcCC---------CCCccccccHHhhhccc
Confidence 457899999999999999999999999999999753 68999999887766654
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.2e-07 Score=88.04 Aligned_cols=45 Identities=40% Similarity=0.902 Sum_probs=40.3
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
.+.+.||||++.+..|++++|||.||..||..++. . ...||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~--------~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G--------PLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-C--------CcCCcccCC
Confidence 46789999999999999999999999999999987 2 279999994
No 27
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.11 E-value=5.7e-07 Score=71.62 Aligned_cols=51 Identities=27% Similarity=0.710 Sum_probs=26.9
Q ss_pred CcccccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
+.+.|++|.+.+..|+ +..|.|+||..||...+. ..||+|+.+.-.+|++-
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----------~~CPvC~~Paw~qD~~~ 57 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----------SECPVCHTPAWIQDIQI 57 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----------TB-SSS--B-S-SS---
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----------CCCCCcCChHHHHHHHh
Confidence 3578999999999998 579999999999966442 46999999887777653
No 28
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.3e-06 Score=88.65 Aligned_cols=64 Identities=23% Similarity=0.503 Sum_probs=47.8
Q ss_pred CccccCcchhhhhhhcCCCCcccccccCcCC-C------------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCC
Q 009749 90 DPDKMLQWEDIICVRYSNPLSVQCPICLEYP-L------------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRC 156 (527)
Q Consensus 90 dpd~~v~w~~I~~v~~~~~e~~~CPICle~~-~------------~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~C 156 (527)
|.|.++.--.++|+ ..++..|-||++.+ . .|..++|||+++..|+..|++.+ ..|
T Consensus 270 dl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---------QTC 337 (491)
T COG5243 270 DLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---------QTC 337 (491)
T ss_pred HHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---------cCC
Confidence 44555544444443 56788999999873 3 24678999999999999999854 589
Q ss_pred CCCcccccC
Q 009749 157 PLCFVMISS 165 (527)
Q Consensus 157 PlCr~~i~~ 165 (527)
|+||.++--
T Consensus 338 PICr~p~if 346 (491)
T COG5243 338 PICRRPVIF 346 (491)
T ss_pred CcccCcccc
Confidence 999998643
No 29
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.95 E-value=5e-06 Score=70.12 Aligned_cols=51 Identities=29% Similarity=0.552 Sum_probs=37.2
Q ss_pred CcccccccCcCCC------------Cce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPL------------CPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~------------~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+-.|+||...+. .|. .-.|+|.|+..||.+|+.... ....||+||.+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~------~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS------SKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc------CCCCCCCcCCeeee
Confidence 3556777765553 243 347999999999999999753 23699999997654
No 30
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6.8e-06 Score=82.41 Aligned_cols=50 Identities=36% Similarity=0.862 Sum_probs=41.9
Q ss_pred CCcccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 108 PLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....+||+|.+.|..|.+. +|||+||+.||..-...+ .+..||.|.+.+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~-------asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD-------ASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch-------hhcccCccCCCCc
Confidence 3567999999999999966 599999999998877654 3589999998765
No 31
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.4e-06 Score=90.00 Aligned_cols=48 Identities=40% Similarity=0.847 Sum_probs=41.6
Q ss_pred CcccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
..+.|||||+.+...+++ .|+|.||..||..-+..+. ..||.||..+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn--------~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN--------NECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC--------CCCchHHhhcc
Confidence 578999999999988876 7999999999999888653 79999998763
No 32
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.78 E-value=1.7e-06 Score=92.81 Aligned_cols=56 Identities=30% Similarity=0.537 Sum_probs=45.9
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
...+..|.+|.++..+++.++|.|.||.-||..|+..-.+. ....||.|...+.-.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~----~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMEN----NNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcc----cCCCCcccccccccc
Confidence 34567899999999999999999999999999999864321 237999998877543
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.4e-05 Score=89.16 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=42.7
Q ss_pred CcccccccCcCCCC-----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 109 LSVQCPICLEYPLC-----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 109 e~~~CPICle~~~~-----P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
....|+||++.+.. |..++|||+||..|+..|++.. ..||+||..+....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~---------qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ---------QTCPTCRTVLYDYV 344 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh---------CcCCcchhhhhccc
Confidence 46789999999887 7899999999999999999963 68999999554433
No 34
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=7.6e-06 Score=62.98 Aligned_cols=46 Identities=33% Similarity=0.809 Sum_probs=40.3
Q ss_pred ccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 111 VQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 111 ~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
-+|.||.+-+++.++-.|||. +|+.|-++.+... ...||+||.+|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~--------~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL--------HGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc--------CCcCcchhhHHH
Confidence 589999999999999999995 6999999988753 368999999874
No 35
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=3.3e-05 Score=78.42 Aligned_cols=50 Identities=28% Similarity=0.695 Sum_probs=40.5
Q ss_pred CCcccccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~~~~P---~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.....|.||++.+... +.++|-|.|+..|+..|+.. ...+||+||.++.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--------y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--------YSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--------hcccCCccCCCCCC
Confidence 3568999999887532 36899999999999999973 23799999998753
No 36
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.6e-05 Score=80.65 Aligned_cols=52 Identities=31% Similarity=0.549 Sum_probs=43.7
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (527)
....|+||+..+..|+.+.|+|.||+-||..-...+ ...|++||.+|...-+
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd--------k~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND--------KKTCAVCRFPIDSTID 57 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcC--------CCCCceecCCCCcchh
Confidence 346899999999999999999999999998876643 3679999999976543
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.9e-05 Score=80.24 Aligned_cols=45 Identities=36% Similarity=0.649 Sum_probs=37.0
Q ss_pred cccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 112 QCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 112 ~CPICle~~~~P---~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.|.||+|.+... ++++|+|.|+..||-.|+.... ..||+|+..+.
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r--------~~CPvCK~di~ 278 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR--------TFCPVCKRDIR 278 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhcC--------ccCCCCCCcCC
Confidence 999999988643 4789999999999999998531 56999987543
No 38
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.46 E-value=5.9e-05 Score=59.26 Aligned_cols=43 Identities=42% Similarity=0.732 Sum_probs=30.5
Q ss_pred CcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC
Q 009749 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 158 (527)
Q Consensus 109 e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl 158 (527)
..+.|||.+.++.+|+. +.|||+|....|+.|+... ....||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~-------~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN-------GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT-------S-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc-------CCCCCCC
Confidence 46899999999999996 5999999999999999422 3489998
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0001 Score=78.84 Aligned_cols=49 Identities=31% Similarity=0.688 Sum_probs=43.2
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
..++.|.||...+..|+.++|||.||..||.+.+.. ...||+|+..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~---------~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ---------ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc---------CCCCccccccccc
Confidence 578999999999999999999999999999996652 3799999998864
No 40
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.28 E-value=7e-05 Score=77.10 Aligned_cols=50 Identities=36% Similarity=0.813 Sum_probs=43.3
Q ss_pred CcccccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 109 e~~~CPICle~~~~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
...+|.+|-.+++++. ++.|-|.||..||+.|+... ..||.|...+....
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~---------~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES---------KYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh---------ccCCccceeccCcc
Confidence 4578999999999887 67899999999999999862 69999998887654
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.07 E-value=0.00019 Score=69.04 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=38.5
Q ss_pred cccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
.+.|-||-..+..|++|.|||.||..|..+-+.. ...|-+|....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k---------g~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK---------GDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc---------CCcceecchhh
Confidence 4689999999999999999999999998886653 26899997644
No 42
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.06 E-value=0.00026 Score=71.84 Aligned_cols=80 Identities=30% Similarity=0.507 Sum_probs=57.7
Q ss_pred cccceEeecCCCCCCCCCCCccccCcchhhhhhh---cCCCC----------cccccccCcCCCCceEc-CCCCcccHHH
Q 009749 71 QANYKFVVLDTGDHAPESMDPDKMLQWEDIICVR---YSNPL----------SVQCPICLEYPLCPQIT-SCGHIFCFPC 136 (527)
Q Consensus 71 qaN~rFvV~~~~dy~~~~~dpd~~v~w~~I~~v~---~~~~e----------~~~CPICle~~~~P~it-~CGHiFC~~C 136 (527)
-+|...++.+.|.|.....|. -.|++--+-. ....+ .+.||.|...+.+|+.| .|||.||..|
T Consensus 225 ~~~a~imit~EG~yVv~qpdv---qsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~ec 301 (427)
T COG5222 225 PSNAAIMITPEGGYVVAQPDV---QSWEKYQQRTKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDEC 301 (427)
T ss_pred ccccceEEcCCCCeEEeccch---HHHHHHHHHHHhhhhCchhhhccCCCCccccCcchhhhhhCcccCccccchHHHHH
Confidence 456678899999998766553 3565543211 01111 38999999999999988 7899999999
Q ss_pred HHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 137 ILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 137 I~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
|..-+... -+.||.|..
T Consensus 302 i~~al~ds--------Df~CpnC~r 318 (427)
T COG5222 302 IGTALLDS--------DFKCPNCSR 318 (427)
T ss_pred Hhhhhhhc--------cccCCCccc
Confidence 98877643 289999943
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00025 Score=72.05 Aligned_cols=46 Identities=33% Similarity=0.713 Sum_probs=39.5
Q ss_pred cccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.+.|-||..++..|++|.|||.||..|-+.-+.. ..+|++|...+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk---------~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK---------GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc---------CCcceecccccc
Confidence 4679999999999999999999999998877653 368999977653
No 44
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.78 E-value=0.00071 Score=71.08 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=43.6
Q ss_pred cccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
..-|-||-+--.+-.+-+|||..|-.|+..|...++ ...||.||..|...+
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~-------gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE-------GQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCC-------CCCCCceeeEecccc
Confidence 356999999999989999999999999999987653 368999999887655
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00075 Score=72.58 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=37.5
Q ss_pred CcccccccCcCCC-----------------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPL-----------------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~-----------------~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....|+||+.+.. +=.+|+|.|+|...|+++|+..- ...||.||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--------kl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--------KLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--------cccCCccCCCCC
Confidence 4578999997642 01257999999999999999842 258999999875
No 46
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0011 Score=68.89 Aligned_cols=51 Identities=31% Similarity=0.712 Sum_probs=43.7
Q ss_pred CCCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 106 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+.++..||||..-+..++.++|||.-|+.||.+++... +.|-.|...+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~---------k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC---------KRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC---------CeeeEecceeee
Confidence 345778999999999999999999999999999999853 689999876653
No 47
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0018 Score=64.41 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=46.3
Q ss_pred CcccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 109 e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
..+.||||.+.+.+.+ +-+|||+||+.|...++..+ ..||+|..++..+++..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D---------~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD---------MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc---------ccccCCCCcCcccceEee
Confidence 6789999999887644 56999999999999998743 689999999999998765
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.59 E-value=0.00092 Score=71.78 Aligned_cols=54 Identities=33% Similarity=0.762 Sum_probs=45.7
Q ss_pred CCcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 108 PLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.+.+.||||..+..+|+. +.|||.||..|+..|+.. ...||.|+..+......+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---------~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---------HQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc---------CcCCcccccccchhhccC
Confidence 467899999999999998 499999999999999985 268999988776655543
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.58 E-value=0.00073 Score=72.09 Aligned_cols=45 Identities=29% Similarity=0.670 Sum_probs=36.8
Q ss_pred CcccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
+-.+|||||+-+...+ .+.|.|.|...|+..|+. ..||+||-...
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----------~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----------SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc-----------CcChhhhhhcC
Confidence 5689999998765443 468999999999999986 58999987555
No 50
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0016 Score=67.98 Aligned_cols=48 Identities=25% Similarity=0.582 Sum_probs=39.8
Q ss_pred CCcccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....+|-||+..+.+-++++|-|. .|..|-..+.-+ ..+||+||.++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q---------~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ---------TNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh---------hcCCCccccchH
Confidence 346799999999999999999995 599998765532 368999999884
No 51
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.50 E-value=0.0007 Score=77.11 Aligned_cols=52 Identities=33% Similarity=0.724 Sum_probs=46.1
Q ss_pred ccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 111 ~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
..|+||++ +..++++.|||.||..|+...+..... ..||+|+..+..+++..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~-------~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSEN-------APCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccC-------CCCcHHHHHHHHHHHhh
Confidence 89999999 888889999999999999999987642 48999999998887765
No 52
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0021 Score=67.55 Aligned_cols=53 Identities=26% Similarity=0.709 Sum_probs=37.6
Q ss_pred ccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 111 VQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 111 ~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
..|.||.+-.-.-. +-.|||+|...|+.+|+.... ..+.||+|+-.+..+.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P------s~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP------SNRGCPICQIKLQERHVA 61 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC------ccCCCCceeecccceeee
Confidence 47999965433222 445999999999999999764 127999999555544443
No 53
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.26 E-value=0.0043 Score=63.07 Aligned_cols=53 Identities=17% Similarity=0.366 Sum_probs=41.1
Q ss_pred CCcccccccCcCCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 108 PLSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~P----~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
...+.|||+...+..- .+.+|||+|+..||...- . ...||+|..++...|+.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~--------~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--K--------SKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--c--------cccccccCCccccCCEEE
Confidence 4578999999888432 256999999999998873 1 157999999998777654
No 54
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0022 Score=67.03 Aligned_cols=45 Identities=33% Similarity=0.844 Sum_probs=37.2
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
+...-|-||++.+.+.+..+|||..| |..-.... ..||+||..|.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l----------~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL----------PQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhhC----------CCCchhHHHHH
Confidence 34678999999999999999999987 87766543 57999998874
No 55
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0015 Score=67.34 Aligned_cols=55 Identities=31% Similarity=0.766 Sum_probs=43.2
Q ss_pred cCCCCcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 009749 105 YSNPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (527)
Q Consensus 105 ~~~~e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (527)
...++...||||+-.-.+|.+ ..-|-+||++|+.+|+.. ...||+-..+....++
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---------~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---------YGHCPVTGYPASVDHL 350 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---------cCCCCccCCcchHHHH
Confidence 345567899999998888875 466999999999999983 4789998776654443
No 56
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.22 E-value=0.0011 Score=54.10 Aligned_cols=56 Identities=32% Similarity=0.729 Sum_probs=26.3
Q ss_pred cccccccCcCCC-C---ceE----cCCCCcccHHHHHHHHHcCCCCCC--CCCcCCCCCCcccccC
Q 009749 110 SVQCPICLEYPL-C---PQI----TSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMISS 165 (527)
Q Consensus 110 ~~~CPICle~~~-~---P~i----t~CGHiFC~~CI~~~l~~~~~~~k--~~~~~~CPlCr~~i~~ 165 (527)
+..|+||..... . |.. ..|++.|+..||..|+........ ..-...||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999997644 2 332 379999999999999986432111 0012479999998753
No 57
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.18 E-value=0.0049 Score=69.58 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=39.7
Q ss_pred CCcccccccCcCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 108 PLSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~---it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
.....||+|+..+.+.. -..|+|+||..||..|-... ..||+||..+..-.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a---------qTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA---------QTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc---------ccCchhhhhhheee
Confidence 35678999997665443 34799999999999998753 58999998876543
No 58
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0014 Score=66.51 Aligned_cols=42 Identities=31% Similarity=0.754 Sum_probs=34.7
Q ss_pred cccccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 110 SVQCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGH-iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
..-|.||++.|.+-+.+.||| +-|..|-. ....||+||..+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-------------rm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-------------RMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-------------ccccCchHHHHHH
Confidence 567999999999999999999 45888832 3468999998763
No 59
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0031 Score=66.43 Aligned_cols=54 Identities=28% Similarity=0.602 Sum_probs=39.9
Q ss_pred CCcccccccCcCCCCce-----E---cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 108 PLSVQCPICLEYPLCPQ-----I---TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~-----i---t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
..+..|.||++...+.. . .+|-|.||..||..|-..... .-+..+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~--~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF--ESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc--ccccccCCCcccCcc
Confidence 45789999998765544 2 579999999999999864321 111358999998765
No 60
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0019 Score=68.29 Aligned_cols=56 Identities=29% Similarity=0.613 Sum_probs=43.5
Q ss_pred CcccccccCcCCCCce-----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 109 LSVQCPICLEYPLCPQ-----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 109 e~~~CPICle~~~~P~-----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
....||||++..+-|. .+.|||.|-..||.+|+- . +....||.|...-.++++++.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k------~~~~~cp~c~~katkr~i~~e 63 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-K------KTKMQCPLCSGKATKRQIRPE 63 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-h------hhhhhCcccCChhHHHHHHHH
Confidence 3568999998765443 568999999999999994 1 145799999887777776654
No 61
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.81 E-value=0.0032 Score=72.23 Aligned_cols=49 Identities=22% Similarity=0.544 Sum_probs=38.7
Q ss_pred CcccccccCcCCC-------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPL-------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~-------~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
...+|+||...+. .-+...|.|.|+-.|+..|+..+. ...||+||..+.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-------~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-------RSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-------CCCCCccccccc
Confidence 4568999997643 233567999999999999999764 379999997664
No 62
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.55 E-value=0.014 Score=44.41 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=33.6
Q ss_pred cccccCc--CCCCceEcCCC-----CcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 009749 112 QCPICLE--YPLCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (527)
Q Consensus 112 ~CPICle--~~~~P~it~CG-----HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (527)
.|-||++ ....+.+.+|. |.+...|+.+|+.... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-------NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-------CCcCCCCC
Confidence 4889997 55677788885 7899999999998653 36899994
No 63
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.47 E-value=0.004 Score=61.97 Aligned_cols=46 Identities=37% Similarity=0.889 Sum_probs=31.4
Q ss_pred ccccccCcCC-CCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 111 VQCPICLEYP-LCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 111 ~~CPICle~~-~~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
..|-.|.--+ ..+. +|.|+|+||..|...- ....||+|+.++....
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-----------~~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-----------SPDVCPLCKKSIRIIQ 51 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-----------Cccccccccceeeeee
Confidence 3688888543 3343 8899999999996331 1238999998764433
No 64
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.0051 Score=62.00 Aligned_cols=55 Identities=24% Similarity=0.548 Sum_probs=43.3
Q ss_pred CcccccccCcCCCC----------ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLC----------PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~----------P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
++..|.||...+.. -..++|+|+|.-.||..|.-.++ ...||.|.+.+..+.+.+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK-------kqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK-------KQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC-------CCCCchHHHHhhHhhhcc
Confidence 56789999865532 23679999999999999998764 379999999887666654
No 65
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.019 Score=61.12 Aligned_cols=51 Identities=24% Similarity=0.557 Sum_probs=37.0
Q ss_pred CcccccccCcCCCC---ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 009749 109 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (527)
Q Consensus 109 e~~~CPICle~~~~---P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (527)
..+.|.||++.... -+.++|+|+||..|+..|+......+.. ...+||-|.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v-~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQV-SCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhccee-eeecCCCCC
Confidence 56889999987654 3368999999999999999875422221 346787653
No 66
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.02 Score=47.35 Aligned_cols=47 Identities=32% Similarity=0.627 Sum_probs=35.0
Q ss_pred cccccCcCCC------------CceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 112 QCPICLEYPL------------CPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 112 ~CPICle~~~------------~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.|.||.-+|. .|.+. .|.|.|..-||++|+.... ....||+||....
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t------sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPT------SQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcc------ccccCCcchheeE
Confidence 6777765553 24433 6999999999999999765 3479999998653
No 67
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.14 E-value=0.043 Score=45.82 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=25.7
Q ss_pred cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 126 TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 126 t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
-.|-|.|..-||.+|+... ..||+|+....
T Consensus 52 G~CnHaFH~HCI~rWL~Tk---------~~CPld~q~w~ 81 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTK---------GVCPLDRQTWV 81 (88)
T ss_pred EecchHHHHHHHHHHHhhC---------CCCCCCCceeE
Confidence 3699999999999999863 58999998664
No 68
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.12 E-value=0.058 Score=50.70 Aligned_cols=58 Identities=24% Similarity=0.437 Sum_probs=37.6
Q ss_pred CcccccccCcCCCCceEcCCC-------Ccc------cHHHHHHHHHcCCCCC----------------------CCCCc
Q 009749 109 LSVQCPICLEYPLCPQITSCG-------HIF------CFPCILQYLLMGDEDY----------------------KGDCF 153 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CG-------HiF------C~~CI~~~l~~~~~~~----------------------k~~~~ 153 (527)
++..||||++.|.+++++-|. -.+ ..-|+.+|.+...... .....
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 356899999999999977542 222 3578888877532110 01123
Q ss_pred CCCCCCcccccCC
Q 009749 154 KRCPLCFVMISSK 166 (527)
Q Consensus 154 ~~CPlCr~~i~~~ 166 (527)
..||+||..|...
T Consensus 81 L~CPLCRG~V~GW 93 (162)
T PF07800_consen 81 LACPLCRGEVKGW 93 (162)
T ss_pred ccCccccCceece
Confidence 6899999877543
No 69
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.033 Score=59.11 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=43.1
Q ss_pred CCCcccccccCcCC---CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 107 NPLSVQCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 107 ~~e~~~CPICle~~---~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
-+..+.|||=.+.- ..|+++.|||+.|..-|.+....+. ...+||.|-......+.+.|
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~------~sfKCPYCP~e~~~~~~kql 392 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS------QSFKCPYCPVEQLASDTKQL 392 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC------eeeeCCCCCcccCHHhcccc
Confidence 34578999976543 3577899999999999998877543 35899999766555554443
No 70
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.038 Score=56.47 Aligned_cols=55 Identities=31% Similarity=0.798 Sum_probs=42.8
Q ss_pred cccccCc-CCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEee
Q 009749 112 QCPICLE-YPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 174 (527)
Q Consensus 112 ~CPICle-~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~ 174 (527)
.||+|-. .+.+|. +-+|||..|-.|+-+.+..+. ..||-|..++....++.-.++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~--------~~CpeC~~iLRk~nfr~q~fE 61 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP--------AQCPECMVILRKNNFRVQTFE 61 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC--------CCCCcccchhhhcccchhhcc
Confidence 5999994 556654 238999999999999998653 799999999888777643333
No 71
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.63 E-value=0.064 Score=48.99 Aligned_cols=53 Identities=25% Similarity=0.578 Sum_probs=44.8
Q ss_pred CCcccccccCcCCCCceEcC----CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 108 PLSVQCPICLEYPLCPQITS----CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~----CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
+..++|.||.+...+.+.++ ||-..|..|-...|+... .+..||.|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~------~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN------LYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc------cCCCCCccccccccc
Confidence 36789999999988888663 999999999999999865 568999999887543
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.43 E-value=0.053 Score=41.21 Aligned_cols=43 Identities=30% Similarity=0.517 Sum_probs=21.1
Q ss_pred ccccCcCCCCc--eEc--CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 113 CPICLEYPLCP--QIT--SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 113 CPICle~~~~P--~it--~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
||+|.+.+... .+. .||+..|..|..+.+... ...||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--------~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE--------GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS---------SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc--------CCCCCCCCCCC
Confidence 89999877321 233 689999999988877532 26999999864
No 73
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.26 E-value=0.041 Score=42.85 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=36.2
Q ss_pred cccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
...|-.|...-...++++|||..|..|.--. ++.-||+|..++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~-----------rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE-----------RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh-----------hccCCCCCCCcccCCC
Confidence 4567778887788889999999999985321 4578999999886543
No 74
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.057 Score=55.50 Aligned_cols=46 Identities=30% Similarity=0.618 Sum_probs=38.1
Q ss_pred cccccccCcCCC------CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 110 SVQCPICLEYPL------CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 110 ~~~CPICle~~~------~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
.+.|-||-+.+. .|+++.|||.+|..|+...+... +..||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~--------~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS--------RILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc--------eeeccCCCCcc
Confidence 357999997764 57889999999999999988753 47899999984
No 75
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.69 E-value=0.036 Score=55.14 Aligned_cols=58 Identities=26% Similarity=0.599 Sum_probs=44.3
Q ss_pred CcccccccCc-CCCCceE----c-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCC--CCcccccCCCceeEEee
Q 009749 109 LSVQCPICLE-YPLCPQI----T-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCP--LCFVMISSKELYTIHIE 174 (527)
Q Consensus 109 e~~~CPICle-~~~~P~i----t-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CP--lCr~~i~~~~L~~v~~~ 174 (527)
.+..||||.. .+.+|-+ - .|-|.+|-.|+.+.+..+. ..|| -|...+++..++.-.++
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp--------AqCP~~gC~kILRK~kf~~qtFe 74 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP--------AQCPYKGCGKILRKIKFIKQTFE 74 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC--------CCCCCccHHHHHHHhcccccccc
Confidence 4568999994 4566642 2 4999999999999998764 7899 79998887777654443
No 76
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.65 E-value=0.061 Score=57.50 Aligned_cols=36 Identities=28% Similarity=0.694 Sum_probs=32.3
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 143 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~ 143 (527)
++++.||||...+.+|++++|||..|..|-+..+..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 467899999999999999999999999999876654
No 77
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.036 Score=57.01 Aligned_cols=60 Identities=27% Similarity=0.537 Sum_probs=39.6
Q ss_pred cCcchhhhhhh---cCCCCcccccccCcC-CCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 94 MLQWEDIICVR---YSNPLSVQCPICLEY-PLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 94 ~v~w~~I~~v~---~~~~e~~~CPICle~-~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.+-|+.-+.++ ...+....|--|--+ .+-.+|++|.|+||+.|-..- .-+.||.|-..+.
T Consensus 71 hl~w~~~V~~~gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~-----------~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 71 HLTWIKPVGRRGEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSD-----------SDKICPLCDDRVQ 134 (389)
T ss_pred ceeeeeecccccccccCcceEeecccCCcceeeecccccchhhhhhhhhcC-----------ccccCcCcccHHH
Confidence 46676544322 122334568888754 456779999999999996431 1268999987664
No 78
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.61 E-value=0.022 Score=64.44 Aligned_cols=62 Identities=31% Similarity=0.518 Sum_probs=48.1
Q ss_pred hhhcCCCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 102 CVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 102 ~v~~~~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
+|.......++||||+.....|..+.|-|+||..|+...+.... ....||+|+..+.++.++
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~------~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK------GPKQCALCKSDIEKRSLR 74 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccC------ccccchhhhhhhhhhhcc
Confidence 34334456789999999999999999999999999988776543 247899999766555443
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.27 E-value=0.11 Score=53.96 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=40.8
Q ss_pred CCcccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 009749 108 PLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (527)
.++-.||+|++++...- -.+||-..|.-|....-..- ..+||-||.......++-+.+
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l--------ngrcpacrr~y~denv~~~~~ 73 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL--------NGRCPACRRKYDDENVRYVTL 73 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc--------cCCChHhhhhccccceeEEec
Confidence 34556999999864322 35789888888876654432 268999999888777765544
No 80
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=0.1 Score=52.25 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=32.5
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMG 144 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~ 144 (527)
..-.|.+||.+..+|++++=||+||..||++|+-.+
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 345789999999999999999999999999999764
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.21 E-value=0.092 Score=54.80 Aligned_cols=48 Identities=27% Similarity=0.609 Sum_probs=39.0
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
++...|-||-+-..-..+++|||..|.-|-++.-..-. .+.||+|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-------~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-------QKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-------ccCCCccccc
Confidence 35678999999988888999999999999988655421 3789999853
No 82
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.25 E-value=0.14 Score=53.33 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=36.4
Q ss_pred CCcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 108 PLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.+.+.||||.+.+..|.+ -.=||.-|..|-... ..+||.|+.++.
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~------------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV------------SNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhh------------cccCCccccccc
Confidence 356799999999998863 456999999996532 369999999887
No 83
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.98 E-value=0.11 Score=54.96 Aligned_cols=47 Identities=28% Similarity=0.537 Sum_probs=36.8
Q ss_pred CcccccccCcCCC----CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 109 LSVQCPICLEYPL----CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 109 e~~~CPICle~~~----~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
.++.|..|-+.+- .-.-++|.|+|+..|+..++... ....||.||+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-------~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN-------GTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC-------CCCCCccHHHH
Confidence 4688999997642 22368999999999999999653 34899999843
No 84
>PHA03096 p28-like protein; Provisional
Probab=89.96 E-value=0.17 Score=52.32 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.5
Q ss_pred ccccccCcCCCC--------ceEcCCCCcccHHHHHHHHHcCC
Q 009749 111 VQCPICLEYPLC--------PQITSCGHIFCFPCILQYLLMGD 145 (527)
Q Consensus 111 ~~CPICle~~~~--------P~it~CGHiFC~~CI~~~l~~~~ 145 (527)
-.|.||++.... ..+..|-|.||..|+..|.....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~ 221 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL 221 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh
Confidence 689999986432 12558999999999999998653
No 85
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.67 E-value=0.052 Score=55.69 Aligned_cols=56 Identities=32% Similarity=0.570 Sum_probs=38.6
Q ss_pred CcccccccCcCCC-Cc--eEcCCCCcccHHHHHHHHHcCCC--------C-----C-CCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPL-CP--QITSCGHIFCFPCILQYLLMGDE--------D-----Y-KGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~-~P--~it~CGHiFC~~CI~~~l~~~~~--------~-----~-k~~~~~~CPlCr~~i~ 164 (527)
..-.|.|||.-|. .+ ..|.|-|.|.+.|+.+|+..... . + +......||+||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4568999997664 33 36899999999999999874210 0 0 1111357999998874
No 86
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=0.14 Score=57.21 Aligned_cols=32 Identities=31% Similarity=0.705 Sum_probs=26.6
Q ss_pred ccccccCcCCC----CceEcCCCCcccHHHHHHHHH
Q 009749 111 VQCPICLEYPL----CPQITSCGHIFCFPCILQYLL 142 (527)
Q Consensus 111 ~~CPICle~~~----~P~it~CGHiFC~~CI~~~l~ 142 (527)
+.|+||+..+. .|+.+.|||+.|..|+.....
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh
Confidence 57999987764 678899999999999877654
No 87
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.41 Score=52.40 Aligned_cols=63 Identities=29% Similarity=0.510 Sum_probs=43.0
Q ss_pred CCcccccccCcCCCC-ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--CcccccCCCceeE
Q 009749 108 PLSVQCPICLEYPLC-PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYTI 171 (527)
Q Consensus 108 ~e~~~CPICle~~~~-P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L~~v 171 (527)
....+|.||.+.+.. .....|||.||..|+..|+......+.... .+||. |+..+....+..+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~-i~cp~~~C~a~v~~~~i~~~ 133 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK-IKCPAHGCPALVGEDTVEKL 133 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccccc-ccCCCCCccccCCCceeeee
Confidence 345799999988875 557799999999999999987532211101 45654 7666665555444
No 88
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=87.77 E-value=0.85 Score=52.81 Aligned_cols=56 Identities=27% Similarity=0.510 Sum_probs=41.3
Q ss_pred cCCCCcccccccCcCC--CCce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 105 YSNPLSVQCPICLEYP--LCPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 105 ~~~~e~~~CPICle~~--~~P~--it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
.+....++|-||.+.+ .+|+ ...|-|+|.+.||..|-...+.. . ....+||.|...
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~-~-~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKT-G-QDGWRCPACQSV 245 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhc-c-CccccCCcccch
Confidence 4566789999999875 4555 35688999999999999873321 1 134789999843
No 89
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.55 E-value=0.35 Score=42.39 Aligned_cols=27 Identities=37% Similarity=0.727 Sum_probs=23.3
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 127 SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 127 ~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
.|-|.|..-||.+|+++. ..||+|...
T Consensus 80 ~CNHaFH~hCisrWlktr---------~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR---------NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc---------CcCCCcCcc
Confidence 699999999999999864 589999653
No 90
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.53 E-value=0.18 Score=43.43 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=25.5
Q ss_pred CCcccccccCcCCCCce--EcCCCCcccHHHHH
Q 009749 108 PLSVQCPICLEYPLCPQ--ITSCGHIFCFPCIL 138 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~--it~CGHiFC~~CI~ 138 (527)
.+...|++|...+.... +.+|||+|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45677999999887665 56999999999974
No 91
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.23 E-value=0.17 Score=38.67 Aligned_cols=47 Identities=23% Similarity=0.612 Sum_probs=23.3
Q ss_pred ccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 111 VQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 111 ~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
+.|||....+..|+. ..|.|.-|++ +..|+...... ....||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~----~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRT----PKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS-------B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhcc----CCeECcCCcCc
Confidence 679999999998884 6899998764 34444432211 23789999763
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.14 E-value=0.16 Score=60.87 Aligned_cols=43 Identities=35% Similarity=0.715 Sum_probs=37.1
Q ss_pred CcccccccCcCCC-CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 009749 109 LSVQCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (527)
Q Consensus 109 e~~~CPICle~~~-~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (527)
....|+||++... ...++.|||.+|..|+..|+.. ...||+|.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~---------~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA---------SSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH---------hccCcchh
Confidence 4458999999988 5568899999999999999985 37899997
No 93
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=0.34 Score=52.16 Aligned_cols=58 Identities=28% Similarity=0.584 Sum_probs=38.6
Q ss_pred CcccccccC-cCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--CcccccCCCce
Q 009749 109 LSVQCPICL-EYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELY 169 (527)
Q Consensus 109 e~~~CPICl-e~~~~P~---it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L~ 169 (527)
....|.||. +.+.... +..|||.||..|+.+|+...... .....||- |...+....+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~---~~~~~C~~~~C~~~l~~~~c~ 208 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLS---GTVIRCPHDGCESRLTLESCR 208 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhcc---CCCccCCCCCCCccCCHHHHh
Confidence 357899999 5554423 56799999999999999865211 13467765 55555444443
No 94
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=0.42 Score=48.89 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=39.5
Q ss_pred CcccccccCcCCCCceEcCC----CCcccHHHHHHHHHcCCCCCCCC--CcCCCCCCcccc
Q 009749 109 LSVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMGDEDYKGD--CFKRCPLCFVMI 163 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~C----GHiFC~~CI~~~l~~~~~~~k~~--~~~~CPlCr~~i 163 (527)
..+.|-+|.+-+.+.....| .|.||++|-.+.++.+...+..- ..-+||+-...+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 45899999999999988887 79999999999998754322110 013666655443
No 95
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.39 E-value=0.41 Score=49.60 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=39.8
Q ss_pred CcccccccCcCC---CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 109 LSVQCPICLEYP---LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 109 e~~~CPICle~~---~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
..+.||+=-+.- ..|+++.|||+.-..-+.+..+.+. ..++||.|-..-...+..
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~------~~FKCPYCP~~~~~~~~~ 392 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV------LSFKCPYCPEMSKYENIL 392 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc------EEeeCCCCCcchhhhhhh
Confidence 467899866543 3578999999999998888766543 468999996655444443
No 96
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=84.05 E-value=0.56 Score=56.74 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=40.3
Q ss_pred CcccccccCcC-CC-Cce-EcCCCCcccHHHHHHHHHcCCCCC-CCCCcCCCCCCcccccCCCce
Q 009749 109 LSVQCPICLEY-PL-CPQ-ITSCGHIFCFPCILQYLLMGDEDY-KGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 109 e~~~CPICle~-~~-~P~-it~CGHiFC~~CI~~~l~~~~~~~-k~~~~~~CPlCr~~i~~~~L~ 169 (527)
.+-.|-||+.. +. +|. .+.|||+|.+.|..+.++..=... -.-....||+|..+|...-|+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHH
Confidence 35689999954 33 343 689999999999998887531000 000135899999888654444
No 97
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=83.38 E-value=3.7 Score=37.60 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=49.8
Q ss_pred CceEEEecCCCceeeeccccHHHHHHhhCCCCCCCCccEEEEEEEeeeccCHHHHhhcccccccCCCceEEEEEee
Q 009749 431 DSYNFYQAIDGQHLILHPLNLKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFSLTTTFQMKSGS 506 (527)
Q Consensus 431 ~~y~fYQ~~dgq~~~Lhpl~~k~L~~~~g~~~~~P~~i~~~v~~~~~~~~~e~~r~r~~yL~hlpl~~~~~~~e~d 506 (527)
..|-=++. ++.+.|||.=++.- ..-.-|+-|-|+|++||..+++++ +.-.|| +||.||.|..|++.
T Consensus 62 ~~~~af~~-~~~~YFL~~~s~~~------~~~~~~~w~vgrI~~~e~~~v~~~-~~~Npy--~Lp~Gt~~y~V~v~ 127 (129)
T PF10377_consen 62 QPWAAFNV-GCPHYFLHEDSIAA------NELKRREWIVGRIVSIEECQVKDD-KDSNPY--NLPVGTKFYRVTVE 127 (129)
T ss_pred cceEEeeC-CCceEEEecccchh------ccCCCCCEEEEEEEEEEEEEeccC-CCCCCC--cCCCCCEEEEEEEE
Confidence 34666666 67888888877654 222238889999999999988642 555667 89999999999985
No 98
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.24 E-value=1.4 Score=43.91 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=39.7
Q ss_pred CCCcccccccCcCCCC--ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 107 NPLSVQCPICLEYPLC--PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 107 ~~e~~~CPICle~~~~--P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
+.-...|.+|-.++.. .+.+.|-|.|.|.|+-.|...-...-.. ....||.|...|
T Consensus 47 sDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAP-aGyqCP~Cs~ei 104 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAP-AGYQCPCCSQEI 104 (299)
T ss_pred cCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCC-CcccCCCCCCcc
Confidence 3345689999987754 4467899999999999998764321111 237899997655
No 99
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.69 E-value=0.79 Score=53.08 Aligned_cols=40 Identities=25% Similarity=0.599 Sum_probs=33.1
Q ss_pred cccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 110 SVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 110 ~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
...|..|-..+.-|.+ -.|||.|+..|+. . ...+||.|+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~-------~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----D-------KEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc-----c-------CcccCCccch
Confidence 3589999999988875 6999999999987 1 2379999965
No 100
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=80.40 E-value=0.78 Score=34.80 Aligned_cols=35 Identities=26% Similarity=0.698 Sum_probs=22.4
Q ss_pred CceEcCCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 122 CPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 122 ~P~it~CG-HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.--+..|. |..|..|+...+.. +..||+|..++..
T Consensus 12 ~k~Li~C~dHYLCl~CLt~ml~~---------s~~C~iC~~~LPt 47 (50)
T PF03854_consen 12 NKGLIKCSDHYLCLNCLTLMLSR---------SDRCPICGKPLPT 47 (50)
T ss_dssp -SSEEE-SS-EEEHHHHHHT-SS---------SSEETTTTEE---
T ss_pred CCCeeeecchhHHHHHHHHHhcc---------ccCCCcccCcCcc
Confidence 33466776 88999999887764 3689999988753
No 101
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.23 E-value=0.86 Score=53.04 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=28.2
Q ss_pred CcccccccCcCC-CCce-EcCCCCcccHHHHHHHHHcC
Q 009749 109 LSVQCPICLEYP-LCPQ-ITSCGHIFCFPCILQYLLMG 144 (527)
Q Consensus 109 e~~~CPICle~~-~~P~-it~CGHiFC~~CI~~~l~~~ 144 (527)
-.-+|-+|.-++ ..|. +.+|||.|.+.||.+.....
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHHcc
Confidence 346899999764 4565 56999999999999877653
No 102
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.43 E-value=1.1 Score=51.37 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=32.0
Q ss_pred cccccccCcCCCC---ce-Ec---CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 110 SVQCPICLEYPLC---PQ-IT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 110 ~~~CPICle~~~~---P~-it---~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
..+|+||.-.+.. .. +. .|+|.||..||+.|...-.... ....|+.|...|
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~---k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESE---KHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccc---cccccccHHHHh
Confidence 3455555544433 22 33 4999999999999998654322 235677776544
No 103
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=77.91 E-value=2.3 Score=31.51 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=23.2
Q ss_pred ccccCcCCCCceEc---CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 113 CPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 113 CPICle~~~~P~it---~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
|-+|.+.....+.- .|+=.+...|+..|+.... ..+||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-------~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-------NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-------S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-------CCCCcCC
Confidence 66788877777654 4998899999999998643 2479987
No 104
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=77.70 E-value=2.7 Score=39.81 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCcccccccCcCCCCceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
..+..|=||.+... +...+|.. .-+..|+.+|+..+. ...|++|..+.
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-------~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-------NKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-------CCcccccCCeE
Confidence 45678999997653 23346654 237899999999653 47899998866
No 105
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=76.81 E-value=1.6 Score=46.51 Aligned_cols=41 Identities=15% Similarity=0.522 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHcCCCCCCCC----CcCCCCCCcccccCCCc
Q 009749 128 CGHIFCFPCILQYLLMGDEDYKGD----CFKRCPLCFVMISSKEL 168 (527)
Q Consensus 128 CGHiFC~~CI~~~l~~~~~~~k~~----~~~~CPlCr~~i~~~~L 168 (527)
|-...|..|+-+|+...++..... +...||+||+.+.-.|+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 344568999999999866432211 23689999999876654
No 106
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=76.33 E-value=1.1 Score=41.30 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=26.2
Q ss_pred CcccccccCcCCCC--ceE-cCCC------CcccHHHHHHHHH
Q 009749 109 LSVQCPICLEYPLC--PQI-TSCG------HIFCFPCILQYLL 142 (527)
Q Consensus 109 e~~~CPICle~~~~--P~i-t~CG------HiFC~~CI~~~l~ 142 (527)
...+|.||++...+ .++ +.|| |.||..|+.+|-.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 36799999988766 553 4565 7899999999953
No 107
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.32 E-value=2.8 Score=42.39 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=38.1
Q ss_pred CcccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
..+.|||-.-++..-. +..|||+|-..-+.+.- ...|++|...+...++..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-----------as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-----------ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh-----------hccccccCCcccccCeEe
Confidence 4678999876665433 56999999988877654 268999999887766543
No 108
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=74.96 E-value=1.6 Score=44.92 Aligned_cols=44 Identities=30% Similarity=0.688 Sum_probs=34.5
Q ss_pred CcccccccCcCC----CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 109 LSVQCPICLEYP----LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 109 e~~~CPICle~~----~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
....||||.+.+ ..+...+|||.....|+..+... . ..||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--------~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--------G-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--------C-CCCCcccc
Confidence 345599999764 35668899999999998887753 3 79999977
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.95 E-value=1.8 Score=42.78 Aligned_cols=39 Identities=26% Similarity=0.585 Sum_probs=30.6
Q ss_pred ccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 113 CPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 113 CPICle~~~~P~it~CGH-iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
|-+|.+....-.++||-| ++|..|=.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------------CccCCCCcChhh
Confidence 999999888877889997 679888321 267999987653
No 110
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=69.31 E-value=3.8 Score=47.46 Aligned_cols=73 Identities=23% Similarity=0.499 Sum_probs=49.5
Q ss_pred CcccccccCc--CCCCceEcCCCCc-----ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeecccccCC
Q 009749 109 LSVQCPICLE--YPLCPQITSCGHI-----FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAV 181 (527)
Q Consensus 109 e~~~CPICle--~~~~P~it~CGHi-----FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~~~~~ 181 (527)
+...|-||.. .+.+|..-+|... .+..|+++|+.-+. ..+|-+|..++.-+++. -++ .
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~-------~~kCdiChy~~~Fk~IY---~e~-----m 75 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG-------TKKCDICHYEYKFKDIY---KED-----M 75 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC-------Ccceeeecceeeeeeec---ccC-----C
Confidence 4578999994 4667777777542 47899999998653 37999998877655543 232 2
Q ss_pred CCceEEEEeecCCCC
Q 009749 182 GDTIEFMLLIREKDS 196 (527)
Q Consensus 182 g~~vt~~Lm~R~~~S 196 (527)
-+.+-|.++.|...+
T Consensus 76 P~~IPfsiL~rk~a~ 90 (1175)
T COG5183 76 PQIIPFSILIRKVAD 90 (1175)
T ss_pred CcccceehhHHHHHH
Confidence 345666666666444
No 111
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=69.13 E-value=0.25 Score=40.47 Aligned_cols=40 Identities=28% Similarity=0.521 Sum_probs=22.8
Q ss_pred ccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 111 ~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
..||.|..++.- .=||.+|..|-..|... ..||-|..++.
T Consensus 2 ~~CP~C~~~L~~----~~~~~~C~~C~~~~~~~----------a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW----QGGHYHCEACQKDYKKE----------AFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE----ETTEEEETTT--EEEEE----------EE-TTT-SB-E
T ss_pred CcCCCCCCccEE----eCCEEECccccccceec----------ccCCCcccHHH
Confidence 579999987431 11899999998766542 68999988773
No 112
>PHA02862 5L protein; Provisional
Probab=68.23 E-value=5.1 Score=37.41 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=33.8
Q ss_pred ccccccCcCCCCceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 111 VQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 111 ~~CPICle~~~~P~it~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
..|=||.+.-... ..+|.. .-+..|+.+|+.... ...|++|+.+..-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-------k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-------KKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-------CcCccCCCCeEEE
Confidence 4799999765433 456643 347899999997643 4799999987753
No 113
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.84 E-value=4.2 Score=39.15 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=36.9
Q ss_pred CcccccccCcCCCCce-------EcCCCCcccHHHHHHHHHcCCCCCC--CCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQ-------ITSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~-------it~CGHiFC~~CI~~~l~~~~~~~k--~~~~~~CPlCr~~i~~ 165 (527)
+.-.|.||..+-.+.. -..||..|..-|+..|++.--.... ..-...||.|..++..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4467888986543322 2479999999999999985211000 0012589999888743
No 114
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=65.02 E-value=3.3 Score=27.48 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=12.0
Q ss_pred cccccCcC-CCCceEc-CCCCcc
Q 009749 112 QCPICLEY-PLCPQIT-SCGHIF 132 (527)
Q Consensus 112 ~CPICle~-~~~P~it-~CGHiF 132 (527)
.||-|... +.....- .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 57888753 3333333 477766
No 115
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=63.50 E-value=4.5 Score=30.41 Aligned_cols=40 Identities=28% Similarity=0.697 Sum_probs=24.6
Q ss_pred ccccCcCCC--CceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 113 CPICLEYPL--CPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 113 CPICle~~~--~P~it~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
|-||++.-. .+.+.+|+- ..+..|+.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~-------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG-------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT--------SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC-------CCcCCCC
Confidence 678986432 356777753 347789999999742 3679987
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.21 E-value=7.4 Score=40.27 Aligned_cols=45 Identities=16% Similarity=0.494 Sum_probs=31.2
Q ss_pred CCCcccHHHHHHHHHcCCCCCC----CCCcCCCCCCcccccCCCceeEE
Q 009749 128 CGHIFCFPCILQYLLMGDEDYK----GDCFKRCPLCFVMISSKELYTIH 172 (527)
Q Consensus 128 CGHiFC~~CI~~~l~~~~~~~k----~~~~~~CPlCr~~i~~~~L~~v~ 172 (527)
|....|..|+.+|+...++..- -+++..||+||+.+.-.|+.-|.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v~ 373 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCVD 373 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEEE
Confidence 5566788999999986543200 01347999999998877766543
No 117
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=56.81 E-value=2.4 Score=44.32 Aligned_cols=44 Identities=20% Similarity=0.534 Sum_probs=32.6
Q ss_pred cccccccCcCCCCceEcC----CC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 110 SVQCPICLEYPLCPQITS----CG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~----CG--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
...||||-..|...++.. =| +.+|.-|-..|-.. ..+||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~---------R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV---------RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc---------CccCCCCCCC
Confidence 458999999998776533 34 56788998888653 2689999863
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=55.56 E-value=14 Score=38.90 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=33.8
Q ss_pred CcccccccCcCCCCc--e--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCP--Q--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P--~--it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
-...||||-++...- . -.+||+..|+.|+..... ....||.||.+..
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~---------~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD---------GDGRCPGCRKPYE 298 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccc---------cCCCCCccCCccc
Confidence 347899999876322 1 347999999999877554 3479999995543
No 119
>PRK04023 DNA polymerase II large subunit; Validated
Probab=55.25 E-value=13 Score=44.46 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=38.5
Q ss_pred CcccccccCcCCCCceEcCCCC-----cccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEee
Q 009749 109 LSVQCPICLEYPLCPQITSCGH-----IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 174 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGH-----iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~ 174 (527)
....||-|-.......+..||. .||..|-.. . ....||.|...+.....+.+.+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~--~---------~~y~CPKCG~El~~~s~~~i~l~ 684 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE--V---------EEDECEKCGREPTPYSKRKIDLK 684 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc--C---------CCCcCCCCCCCCCccceEEecHH
Confidence 4578999998765556677984 599999211 1 12579999988877766666444
No 120
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=52.83 E-value=3.2 Score=43.08 Aligned_cols=59 Identities=22% Similarity=0.533 Sum_probs=37.8
Q ss_pred cCCCCcccccccCc-CCCC--ce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 105 YSNPLSVQCPICLE-YPLC--PQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 105 ~~~~e~~~CPICle-~~~~--P~--it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+.+.+...|.+|.- .|.. .+ .-.||++||..|-..-+....-..+ .-+.|+.|+..+.+
T Consensus 163 ~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k--~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 163 LPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTK--PIRVCDICFEELEK 226 (288)
T ss_pred cCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCC--CceecHHHHHHHhc
Confidence 44557789999997 4432 11 4589999999997663333221111 23589999887754
No 122
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.94 E-value=8 Score=44.56 Aligned_cols=56 Identities=29% Similarity=0.504 Sum_probs=37.3
Q ss_pred CCCcccccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCCC
Q 009749 107 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKRC 156 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~----------it~CGHiF--------------------C~~CI~~~l~~~~~~~k~~~~~~C 156 (527)
.++...|+-|+..+.+|. .|.||..| |-.|...|-.-....... ....|
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHA-Qp~aC 176 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHA-QPIAC 176 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcccccccc-ccccC
Confidence 456678999997765542 57888876 889988886643322111 24689
Q ss_pred CCCcccc
Q 009749 157 PLCFVMI 163 (527)
Q Consensus 157 PlCr~~i 163 (527)
|.|.-.+
T Consensus 177 p~CGP~~ 183 (750)
T COG0068 177 PKCGPHL 183 (750)
T ss_pred cccCCCe
Confidence 9997644
No 123
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=50.92 E-value=15 Score=38.41 Aligned_cols=57 Identities=23% Similarity=0.562 Sum_probs=34.4
Q ss_pred CCcccccccCcC-CC----------------Cce--EcCCCCcccHHHHHHHHHcCCCC-CCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEY-PL----------------CPQ--ITSCGHIFCFPCILQYLLMGDED-YKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~-~~----------------~P~--it~CGHiFC~~CI~~~l~~~~~~-~k~~~~~~CPlCr~~i~~ 165 (527)
..+..||+|+.. +. .|. ..+|||+ |..=-..||..-.-- +.-.....||.|...+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 457899999953 21 122 4689995 666666677653210 111135789999887754
No 124
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.00 E-value=12 Score=34.61 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=24.7
Q ss_pred cCCCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHc
Q 009749 105 YSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLM 143 (527)
Q Consensus 105 ~~~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~ 143 (527)
+...++..|-||+-.-.+ -.|||+ |..|-+++...
T Consensus 60 aGv~ddatC~IC~KTKFA---DG~GH~-C~YCq~r~CAR 94 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFA---DGCGHN-CSYCQTRFCAR 94 (169)
T ss_pred cccCcCcchhhhhhcccc---cccCcc-cchhhhhHHHh
Confidence 455678999999964332 369995 88887766554
No 125
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=48.87 E-value=9 Score=38.98 Aligned_cols=44 Identities=32% Similarity=0.510 Sum_probs=36.4
Q ss_pred CcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 109 e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
-.+.|||-..+..+|++ ..|||+|=..-|..++... ....||+-
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~-------~~i~CPv~ 219 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE-------ITIRCPVL 219 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC-------ceeecccc
Confidence 46899999999999995 6899999999999988642 23789873
No 126
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=47.62 E-value=2.2 Score=43.96 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=22.5
Q ss_pred cccccccCcCCCCceEcCC---C--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 110 SVQCPICLEYPLCPQITSC---G--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~C---G--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
...||||-..|...++..= | |.+|.-|-..|--. ...||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~---------R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV---------RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-----------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec---------CCCCcCCCCC
Confidence 4689999999887776543 3 66799998888653 2689999764
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.10 E-value=9.1 Score=41.30 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=24.8
Q ss_pred cccccccCcCCC-----CceEcCCCCcccHHHHHHHHHc
Q 009749 110 SVQCPICLEYPL-----CPQITSCGHIFCFPCILQYLLM 143 (527)
Q Consensus 110 ~~~CPICle~~~-----~P~it~CGHiFC~~CI~~~l~~ 143 (527)
-..||+|..... .-++-.|||-||+.|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 468999986543 2223369999999999888763
No 128
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.16 E-value=18 Score=41.61 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=39.0
Q ss_pred cccccCcCCCCceEcCCCC-cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 112 QCPICLEYPLCPQITSCGH-IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 112 ~CPICle~~~~P~it~CGH-iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.|+||-.-+.-...-.||| ..|..|..+...... ..+....||.|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~---~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELN---NRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcc---cccccccCccccccee
Confidence 5999999888888889999 999999998776543 1224578899988553
No 129
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=42.91 E-value=7.3 Score=40.85 Aligned_cols=44 Identities=20% Similarity=0.561 Sum_probs=32.4
Q ss_pred CcccccccCcCCCCceEc---CCC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 109 LSVQCPICLEYPLCPQIT---SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 109 e~~~CPICle~~~~P~it---~CG--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
....||||-..|...++. .=| |.+|.-|-..|--. ..+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~---------R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV---------RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc---------CccCCCCCC
Confidence 457899999999877542 234 45688898888653 268999986
No 130
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=42.52 E-value=11 Score=46.04 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=37.6
Q ss_pred cccccccCcCCCCceEcCCCCc-----ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEee
Q 009749 110 SVQCPICLEYPLCPQITSCGHI-----FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIE 174 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHi-----FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~ 174 (527)
...||-|-..-....+..||.. +|..|=...-. .. . .+..||-|..++....-+.+.+.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~-de---s--~a~~CP~CGtplv~~~~~~i~~~ 730 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPP-DE---S--GRVECPRCDVELTPYQRRTINVK 730 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCC-Cc---c--ccccCCCCCCcccccceEEecHH
Confidence 5789999975444566678855 48888543211 10 1 14689999988876665555443
No 131
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.11 E-value=19 Score=31.76 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 129 GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 129 GHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.-.||..||..................||.|+....
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 667999999887764321111113478999988543
No 132
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=41.10 E-value=9.8 Score=44.48 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=25.7
Q ss_pred cccccccCcCCCC--ceEcCCCCcccHHHHHHHH
Q 009749 110 SVQCPICLEYPLC--PQITSCGHIFCFPCILQYL 141 (527)
Q Consensus 110 ~~~CPICle~~~~--P~it~CGHiFC~~CI~~~l 141 (527)
...|-.|.....+ =+...||+.+|..|+..|.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 4689999966554 3467999999999999985
No 133
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.51 E-value=9.2 Score=41.17 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=0.0
Q ss_pred CCcccccccCcCCCCce--------------EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 108 PLSVQCPICLEYPLCPQ--------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~--------------it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
....+||+=|..+.-|. -+.|||++-+. .|-.....+ ...+.||+|+..=
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~---~~~r~CPlCr~~g 338 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRD---PRSRTCPLCRQVG 338 (416)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccc---cccccCCCccccC
Confidence 35678999887654322 36899998653 343322211 1358999998643
No 134
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.11 E-value=11 Score=40.73 Aligned_cols=56 Identities=20% Similarity=0.449 Sum_probs=0.0
Q ss_pred cccccccCcC--CC---------------Cce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 110 SVQCPICLEY--PL---------------CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 110 ~~~CPICle~--~~---------------~P~--it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
...||+|+.. ++ .|. ..+|||+--.....-|-...-..+.......||.|..++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 6799999953 21 122 35899975455544444332111111124689999888863
No 135
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.10 E-value=24 Score=41.01 Aligned_cols=21 Identities=29% Similarity=0.814 Sum_probs=18.6
Q ss_pred EcCCCCcccHHHHHHHHHcCC
Q 009749 125 ITSCGHIFCFPCILQYLLMGD 145 (527)
Q Consensus 125 it~CGHiFC~~CI~~~l~~~~ 145 (527)
...|||+..-.|...|+..+.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred hccccccccHHHHHHHHhcCC
Confidence 457999999999999999864
No 136
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=37.97 E-value=21 Score=27.15 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=23.7
Q ss_pred ccccccCcCCCC----ceEcCCCCcccHHHHHHHHHc
Q 009749 111 VQCPICLEYPLC----PQITSCGHIFCFPCILQYLLM 143 (527)
Q Consensus 111 ~~CPICle~~~~----P~it~CGHiFC~~CI~~~l~~ 143 (527)
..|.+|...|.. .....||++||..|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 468899865542 224689999999998766543
No 137
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=37.48 E-value=21 Score=41.19 Aligned_cols=55 Identities=29% Similarity=0.595 Sum_probs=38.8
Q ss_pred cccccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 110 ~~~CPICle~~~~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
.+.|||+.--+..|. -..|.|+=|+.-.. |+....+ +....||+|.+.+...+|.
T Consensus 306 SL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~----~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQ----KPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred EecCCcccceeecCCcccccccceecchhh-hHHhccC----CCeeeCccCCccccccchh
Confidence 578999997666555 56899999988643 4443321 2457899999888777664
No 138
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=37.35 E-value=14 Score=40.44 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=27.1
Q ss_pred cCCCCcccccccCcCCCCce----EcCCCCcccHHHHHH
Q 009749 105 YSNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 139 (527)
Q Consensus 105 ~~~~e~~~CPICle~~~~P~----it~CGHiFC~~CI~~ 139 (527)
....+...||+|-..|.-.. .--||-+.|..|..-
T Consensus 175 ~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 175 LDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred cCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 44556789999999987544 456999999999643
No 139
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.00 E-value=14 Score=40.49 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=20.6
Q ss_pred ccccccCc---CCCCceEcCCCCcccHHHHHHHHH
Q 009749 111 VQCPICLE---YPLCPQITSCGHIFCFPCILQYLL 142 (527)
Q Consensus 111 ~~CPICle---~~~~P~it~CGHiFC~~CI~~~l~ 142 (527)
..|+-+.. ....++.-.|||.||+.|...|-.
T Consensus 164 ~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 164 PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESHS 198 (444)
T ss_pred CCCCceeeccCCCccceeCCCCchhHhhccccccC
Confidence 34544333 234455779999999999765543
No 140
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=36.47 E-value=7.5 Score=30.99 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=17.0
Q ss_pred CcccccccCcCCCCce----EcCCCCcccHHHHHHHH
Q 009749 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYL 141 (527)
Q Consensus 109 e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l 141 (527)
+...|.+|...|.--. --.||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4578999998874322 35799999999875443
No 141
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=36.08 E-value=20 Score=41.90 Aligned_cols=56 Identities=29% Similarity=0.459 Sum_probs=34.9
Q ss_pred CCCcccccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCCC
Q 009749 107 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKRC 156 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~----------it~CGHiF--------------------C~~CI~~~l~~~~~~~k~~~~~~C 156 (527)
.++.-.|+-|+..+.+|. .|.||-.| |..|...|......... -....|
T Consensus 65 ppD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h-~~~~~C 143 (711)
T TIGR00143 65 PADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFH-AQPIAC 143 (711)
T ss_pred CCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCC-CCCccC
Confidence 456678999997766543 46788765 88888887653221111 123578
Q ss_pred CCCcccc
Q 009749 157 PLCFVMI 163 (527)
Q Consensus 157 PlCr~~i 163 (527)
|.|.-.+
T Consensus 144 ~~Cgp~l 150 (711)
T TIGR00143 144 PRCGPQL 150 (711)
T ss_pred CCCCcEE
Confidence 8886555
No 142
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=33.40 E-value=23 Score=35.69 Aligned_cols=43 Identities=33% Similarity=0.618 Sum_probs=35.3
Q ss_pred CcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC
Q 009749 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL 158 (527)
Q Consensus 109 e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl 158 (527)
-+..|||-+.+...|.+ +.|.|.|=..-|..++... ..+.||.
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~-------~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVE-------CTRVCPR 231 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCC-------ceeecch
Confidence 46899999999999985 6899999999999998742 3467774
No 143
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=33.34 E-value=38 Score=37.12 Aligned_cols=53 Identities=30% Similarity=0.420 Sum_probs=45.9
Q ss_pred cccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 009749 112 QCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (527)
Q Consensus 112 ~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (527)
.|.|--+.|..|++- .-||+|=..-|.+|+.. ..+||+-..++...+|.+|..
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e---------~G~DPIt~~pLs~eelV~Ik~ 55 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE---------TGKDPITNEPLSIEELVEIKV 55 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHH---------cCCCCCCCCcCCHHHeeeccc
Confidence 599999999999975 79999999999999984 268999999999988887644
No 144
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.94 E-value=23 Score=37.17 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=27.4
Q ss_pred CcccccccCcCCCCce--------------EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 109 LSVQCPICLEYPLCPQ--------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 109 e~~~CPICle~~~~P~--------------it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
...+||+=|..+.-|. -+.|||+--. ..|-. .++ .+...++||+|+.
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~-~e~--~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGV-REN--TGQRERECPMCRV 349 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEeccccccc---ccccc-ccc--cCcccCcCCeeee
Confidence 4578999887654332 3689997532 12221 111 1223589999975
No 145
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=32.47 E-value=16 Score=41.42 Aligned_cols=40 Identities=23% Similarity=0.545 Sum_probs=26.1
Q ss_pred CcccccccCc-CCCCce-------EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 009749 109 LSVQCPICLE-YPLCPQ-------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (527)
Q Consensus 109 e~~~CPICle-~~~~P~-------it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (527)
..+.|.||.. ...-|. ...||++|+..|+.+ ....||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r------------~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR------------KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc------------cCCCCCchH
Confidence 4677888863 222222 357999999999754 224599993
No 146
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=31.73 E-value=66 Score=24.53 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=8.8
Q ss_pred cccccccCcCCC
Q 009749 110 SVQCPICLEYPL 121 (527)
Q Consensus 110 ~~~CPICle~~~ 121 (527)
.+.||.|...+.
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 578999988443
No 147
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=30.85 E-value=4 Score=35.60 Aligned_cols=47 Identities=28% Similarity=0.594 Sum_probs=15.9
Q ss_pred ccccccCcCC--CCceEcCC--CCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 111 VQCPICLEYP--LCPQITSC--GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 111 ~~CPICle~~--~~P~it~C--GHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
..|+||...+ .++....| ||+| ..|.+.++..... ..+.|++|...+
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~-----~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTP-----GVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS------EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccC-----CeeEcCCCCCEE
Confidence 5799999754 45555555 7987 4566666654331 247899997654
No 148
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.37 E-value=5 Score=42.98 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=38.7
Q ss_pred cccccccCcCCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 110 SVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 110 ~~~CPICle~~~~P----~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
.-+|.||...+..- ..+.|||++...||..|+... .+||.|+..+....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~---------~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATK---------RKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH---------HHhHHHHhhhhhhh
Confidence 45799999766533 357899999999999999862 68999998876544
No 149
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=29.62 E-value=27 Score=34.73 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=35.0
Q ss_pred cccccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 110 ~~~CPICle~~~~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
-..|.+|.......+ .-.||-.|...|+..|+... ..||.|...
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~---------~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRR---------DICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhccc---------CcCCchhcc
Confidence 468999998776655 56888889999999999752 689999653
No 150
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=29.03 E-value=21 Score=39.51 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=23.3
Q ss_pred CCCCcccccccCcCCCCce----EcCCCCcccHHHH
Q 009749 106 SNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCI 137 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~----it~CGHiFC~~CI 137 (527)
...+...|-.|..+|.+-+ ...||-+||..|-
T Consensus 897 pd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs 932 (990)
T KOG1819|consen 897 PDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCS 932 (990)
T ss_pred CCCcchhhhhccCcHHHHHHhhhhcccCceeecccc
Confidence 3445567888888876533 5689999998883
No 151
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.62 E-value=11 Score=38.73 Aligned_cols=44 Identities=34% Similarity=0.638 Sum_probs=34.0
Q ss_pred ccccccCcCCC------CceEcC--------CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 111 VQCPICLEYPL------CPQITS--------CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 111 ~~CPICle~~~------~P~it~--------CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
..|.||...+. .|.+.. |||..|..|+...+... ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~--------~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA--------GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh--------hhcCCcccce
Confidence 56999986543 466666 99999999999988753 2789999764
No 152
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=28.37 E-value=30 Score=29.91 Aligned_cols=37 Identities=30% Similarity=0.624 Sum_probs=27.1
Q ss_pred cccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
...|-||-.....+ ||.||..|-.. ...|.+|...|.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-------------kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-------------KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-------------cCcccccCCeec
Confidence 34699998765544 88999999422 258999988763
No 153
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.26 E-value=38 Score=28.12 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=26.2
Q ss_pred eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 124 QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 124 ~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.+..=-|.||..|....+. ..||.|...+..+.+++
T Consensus 23 ~ICtfEcTFCadCae~~l~-----------g~CPnCGGelv~RP~RP 58 (84)
T COG3813 23 RICTFECTFCADCAENRLH-----------GLCPNCGGELVARPIRP 58 (84)
T ss_pred eEEEEeeehhHhHHHHhhc-----------CcCCCCCchhhcCcCCh
Confidence 3434457899999887664 58999988777666554
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=27.63 E-value=55 Score=25.90 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=29.4
Q ss_pred ccccccCcCC-C---CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 111 VQCPICLEYP-L---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 111 ~~CPICle~~-~---~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
..|-.|-..+ . ++.+-+=-..||..|....+. ..||.|...+..+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-----------~~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-----------GVCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-----------CcCcCCCCccccCC
Confidence 3566676432 2 233333335799999988774 58999987765543
No 155
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.35 E-value=17 Score=41.53 Aligned_cols=66 Identities=20% Similarity=0.423 Sum_probs=43.4
Q ss_pred CCCccccCcchhhhhhhcCCCCcccccccCcCCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 88 SMDPDKMLQWEDIICVRYSNPLSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 88 ~~dpd~~v~w~~I~~v~~~~~e~~~CPICle~~~~P----~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
..+.++..+|. +...|-.|...|..- ....||-+||-.|....+.... .+..+..+.|-.|...+
T Consensus 153 mf~~~~~pdW~----------D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~-~Gi~~~VRVCd~C~E~l 221 (634)
T KOG1818|consen 153 MFDAETAPDWI----------DSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPK-LGIEKPVRVCDSCYELL 221 (634)
T ss_pred hhcccCCcccc----------cccccceeeeeeeeccccccccccchhhccCccccccCccc-ccccccceehhhhHHHh
Confidence 34556666773 345788888776422 2568999999999988777643 11212347899996544
Q ss_pred c
Q 009749 164 S 164 (527)
Q Consensus 164 ~ 164 (527)
.
T Consensus 222 ~ 222 (634)
T KOG1818|consen 222 T 222 (634)
T ss_pred h
Confidence 3
No 156
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.02 E-value=30 Score=31.86 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred cCcchhhhhhhcCCCCcccccccCcCCCCceEcCCCCcccHH
Q 009749 94 MLQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFP 135 (527)
Q Consensus 94 ~v~w~~I~~v~~~~~e~~~CPICle~~~~P~it~CGHiFC~~ 135 (527)
.++|++-+-+.+. ..==||.+.-..-....|||.||-.
T Consensus 45 rv~~~dpillpvg----~hlfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 45 RVDWDDPILLPVG----DHLFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred hcccCCCeeeecC----CcEEEEecccccEEEEeccccccCh
Confidence 4566665433222 1223677655554456899999964
No 157
>PF15616 TerY-C: TerY-C metal binding domain
Probab=25.73 E-value=42 Score=30.96 Aligned_cols=41 Identities=29% Similarity=0.575 Sum_probs=29.0
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....||-|-...--.+ -.||++||+. +. ....||-|.....
T Consensus 76 g~PgCP~CGn~~~fa~-C~CGkl~Ci~--------g~------~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 76 GAPGCPHCGNQYAFAV-CGCGKLFCID--------GE------GEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCCcChhcEEE-ecCCCEEEeC--------CC------CCEECCCCCCeee
Confidence 3489999997654333 3899999963 11 2489999987653
No 158
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=46 Score=34.47 Aligned_cols=44 Identities=20% Similarity=0.535 Sum_probs=32.1
Q ss_pred CcccccccCcCCCCceEc----CCCCc--ccHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 009749 109 LSVQCPICLEYPLCPQIT----SCGHI--FCFPCILQYLLMGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 109 e~~~CPICle~~~~P~it----~CGHi--FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~ 161 (527)
....||+|-..|+..++. .=|-. -|.-|...|.... .+|-.|..
T Consensus 184 ~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR---------~KC~nC~~ 233 (308)
T COG3058 184 SRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVR---------VKCSNCEQ 233 (308)
T ss_pred ccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHH---------HHhccccc
Confidence 345899999999887743 23433 3899999998754 58988854
No 159
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=24.84 E-value=32 Score=37.19 Aligned_cols=33 Identities=27% Similarity=0.822 Sum_probs=23.9
Q ss_pred cccccccC-cCCCCce-EcCCCCcccHHHHHHHHH
Q 009749 110 SVQCPICL-EYPLCPQ-ITSCGHIFCFPCILQYLL 142 (527)
Q Consensus 110 ~~~CPICl-e~~~~P~-it~CGHiFC~~CI~~~l~ 142 (527)
..+||||+ .++.+-- ..-|.-..|..|+..+-.
T Consensus 74 ~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~ 108 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNLVRCCSETICGECFAPFGC 108 (482)
T ss_pred cccCceeeeecccccchhhhhccchhhhheecccC
Confidence 36899999 4555433 456888999999877644
No 160
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.24 E-value=29 Score=37.66 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=24.4
Q ss_pred CCcccccccCcCCCCc------eEcCCCCcccHHHHHHH
Q 009749 108 PLSVQCPICLEYPLCP------QITSCGHIFCFPCILQY 140 (527)
Q Consensus 108 ~e~~~CPICle~~~~P------~it~CGHiFC~~CI~~~ 140 (527)
.....||-|.-+.... ..+.|||.|||-|-...
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l 404 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELL 404 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhc
Confidence 3467899999776422 36799999999996543
No 161
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=1.2e+02 Score=33.01 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=54.5
Q ss_pred cccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEeecccccCCCCceEEEE
Q 009749 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHIENVRQHAVGDTIEFML 189 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~~~~~~~~~g~~vt~~L 189 (527)
-..|.+-+-++..|+.+.=|-+|=+.-|+.|+.. ..+=|+-..++..++|..+.+..-..-+-...|.|..
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk---------~g~nP~tG~kl~~~dLIkL~F~Kns~geyhcPvlfk~ 110 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK---------HGTNPITGQKLDGKDLIKLKFHKNSEGEYHCPVLFKV 110 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH---------cCCCCCCCCccccccceeeeeccCCCCcccCceeeee
Confidence 3578899999999999999999999999999984 3456777888888888887665322222234555555
Q ss_pred eec
Q 009749 190 LIR 192 (527)
Q Consensus 190 m~R 192 (527)
..+
T Consensus 111 FT~ 113 (518)
T KOG0883|consen 111 FTR 113 (518)
T ss_pred ecc
Confidence 544
No 162
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.37 E-value=26 Score=33.41 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=18.4
Q ss_pred CCCcccccccCcCCCCce---EcCCCCccc
Q 009749 107 NPLSVQCPICLEYPLCPQ---ITSCGHIFC 133 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~---it~CGHiFC 133 (527)
..+.-+|.|||+.+...- .++|-.+|.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEee
Confidence 445678999998776543 357776654
No 163
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.22 E-value=48 Score=38.22 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=27.4
Q ss_pred ccccccCcCC----CCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 009749 111 VQCPICLEYP----LCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCF 160 (527)
Q Consensus 111 ~~CPICle~~----~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr 160 (527)
..|-+|..+- .-+..+.|+-.||+.|-..+- ..||+|.
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~------------~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYA------------SISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhhh------------ccCcccC
Confidence 4677887532 234567899999999976653 4799995
No 164
>PF14353 CpXC: CpXC protein
Probab=21.84 E-value=64 Score=28.92 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=24.3
Q ss_pred ccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 111 ~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.+||-|...+...+-+.---..= +=+..-+..+. -....||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~-p~l~e~il~g~-----l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADED-PELKEKILDGS-----LFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCC-HHHHHHHHcCC-----cCEEECCCCCCcee
Confidence 57998888775544221111111 11222222221 23579999988764
No 165
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.13 E-value=15 Score=28.33 Aligned_cols=14 Identities=43% Similarity=1.331 Sum_probs=12.0
Q ss_pred CCCCcccHHHHHHH
Q 009749 127 SCGHIFCFPCILQY 140 (527)
Q Consensus 127 ~CGHiFC~~CI~~~ 140 (527)
.|||.||+.|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 78999999997665
No 166
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=21.06 E-value=74 Score=36.84 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=0.0
Q ss_pred ccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 111 VQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 111 ~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
..||-|.....+ |+.||..| +..-....||.|...+...
T Consensus 2 ~~Cp~Cg~~n~~------~akFC~~C-----------G~~l~~~~Cp~CG~~~~~~ 40 (645)
T PRK14559 2 LICPQCQFENPN------NNRFCQKC-----------GTSLTHKPCPQCGTEVPVD 40 (645)
T ss_pred CcCCCCCCcCCC------CCcccccc-----------CCCCCCCcCCCCCCCCCcc
No 167
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=64 Score=33.08 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=36.7
Q ss_pred CCcccccccCcCCCCce----EcCCC-----CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 108 PLSVQCPICLEYPLCPQ----ITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~----it~CG-----HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
..+..|=||+..-.+.. +-+|- |-.+..|+.+|+...+. ++......||-|+...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-GNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc-CCCCceeechhhcchh
Confidence 35678999996544333 34553 44578999999986543 3333457999997643
No 168
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.06 E-value=56 Score=32.99 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=9.2
Q ss_pred ccccccCcCCC
Q 009749 111 VQCPICLEYPL 121 (527)
Q Consensus 111 ~~CPICle~~~ 121 (527)
+.||+|..++.
T Consensus 3 ~~CP~C~~~l~ 13 (272)
T PRK11088 3 YQCPLCHQPLT 13 (272)
T ss_pred ccCCCCCcchh
Confidence 57999998774
Done!