Query 009749
Match_columns 527
No_of_seqs 357 out of 1608
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:08:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.2 5.4E-12 1.8E-16 102.5 5.4 56 107-170 5-60 (78)
2 3ng2_A RNF4, snurf, ring finge 99.2 3.5E-12 1.2E-16 101.4 3.1 57 107-172 7-70 (71)
3 1g25_A CDK-activating kinase a 99.2 6.5E-12 2.2E-16 98.7 4.4 57 109-173 2-63 (65)
4 2ecy_A TNF receptor-associated 99.2 7.1E-12 2.4E-16 98.8 4.1 53 108-168 13-65 (66)
5 2ysl_A Tripartite motif-contai 99.2 1E-11 3.4E-16 99.4 4.9 55 108-168 18-72 (73)
6 3lrq_A E3 ubiquitin-protein li 99.2 9.7E-12 3.3E-16 106.4 4.1 55 109-171 21-76 (100)
7 2xeu_A Ring finger protein 4; 99.2 7E-12 2.4E-16 97.4 2.8 55 109-172 2-63 (64)
8 2djb_A Polycomb group ring fin 99.2 2.2E-11 7.6E-16 97.7 5.2 53 109-170 14-67 (72)
9 1jm7_A BRCA1, breast cancer ty 99.1 8.5E-12 2.9E-16 107.9 2.4 70 95-170 6-75 (112)
10 2kr4_A Ubiquitin conjugation f 99.1 3E-11 1E-15 100.6 5.4 56 107-171 11-66 (85)
11 3ztg_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 101.2 5.3 56 108-170 11-68 (92)
12 2ecw_A Tripartite motif-contai 99.1 5.5E-11 1.9E-15 97.2 6.4 59 109-170 18-76 (85)
13 2ct2_A Tripartite motif protei 99.1 3.9E-11 1.3E-15 99.1 5.4 57 108-170 13-73 (88)
14 2yur_A Retinoblastoma-binding 99.1 3E-11 1E-15 97.5 4.4 52 108-166 13-65 (74)
15 2kre_A Ubiquitin conjugation f 99.1 3.7E-11 1.3E-15 103.3 4.9 56 107-171 26-81 (100)
16 2csy_A Zinc finger protein 183 99.1 6.2E-11 2.1E-15 97.1 5.8 47 109-164 14-60 (81)
17 2egp_A Tripartite motif-contai 99.1 1.2E-11 4.1E-16 100.3 1.3 61 108-170 10-70 (79)
18 3fl2_A E3 ubiquitin-protein li 99.1 5E-11 1.7E-15 105.5 5.1 53 109-169 51-104 (124)
19 2d8t_A Dactylidin, ring finger 99.1 1.6E-11 5.6E-16 98.2 1.6 52 109-169 14-65 (71)
20 4ayc_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 108.9 3.6 47 109-164 52-98 (138)
21 2ysj_A Tripartite motif-contai 99.1 7.6E-11 2.6E-15 91.9 5.2 46 108-159 18-63 (63)
22 2y43_A E3 ubiquitin-protein li 99.1 3.1E-11 1.1E-15 102.6 3.1 53 109-170 21-74 (99)
23 2ecv_A Tripartite motif-contai 99.1 7.6E-11 2.6E-15 96.3 5.0 60 108-170 17-76 (85)
24 1wgm_A Ubiquitin conjugation f 99.1 8E-11 2.7E-15 100.8 5.3 56 107-171 19-75 (98)
25 2ea6_A Ring finger protein 4; 99.0 6.9E-11 2.4E-15 93.1 3.2 49 108-165 13-68 (69)
26 2c2l_A CHIP, carboxy terminus 99.0 1E-10 3.5E-15 115.8 4.7 56 107-170 205-260 (281)
27 1z6u_A NP95-like ring finger p 99.0 1.5E-10 5.2E-15 106.4 5.2 50 109-166 77-126 (150)
28 1jm7_B BARD1, BRCA1-associated 99.0 3.2E-11 1.1E-15 105.8 0.2 69 91-170 3-72 (117)
29 3hct_A TNF receptor-associated 99.0 1.7E-10 5.6E-15 101.5 4.5 55 108-170 16-70 (118)
30 2ckl_A Polycomb group ring fin 99.0 1.8E-10 6.3E-15 99.4 4.4 49 109-166 14-63 (108)
31 2ckl_B Ubiquitin ligase protei 99.0 7E-11 2.4E-15 109.6 1.7 49 109-165 53-102 (165)
32 2yu4_A E3 SUMO-protein ligase 99.0 2.2E-10 7.6E-15 97.0 4.6 61 107-170 4-68 (94)
33 2ecj_A Tripartite motif-contai 99.0 2.3E-10 7.7E-15 87.3 4.2 45 109-159 14-58 (58)
34 2ect_A Ring finger protein 126 99.0 1.9E-10 6.6E-15 93.2 3.6 53 109-170 14-69 (78)
35 1rmd_A RAG1; V(D)J recombinati 99.0 3.2E-10 1.1E-14 99.1 4.6 54 109-170 22-75 (116)
36 2ecm_A Ring finger and CHY zin 99.0 3.2E-10 1.1E-14 85.6 4.0 48 108-164 3-54 (55)
37 2f42_A STIP1 homology and U-bo 99.0 3.7E-10 1.3E-14 106.8 5.2 58 106-171 102-159 (179)
38 1e4u_A Transcriptional repress 98.9 4.8E-10 1.6E-14 92.1 4.6 54 108-169 9-66 (78)
39 4ap4_A E3 ubiquitin ligase RNF 98.9 2.4E-10 8.2E-15 100.9 3.0 57 108-173 5-68 (133)
40 1chc_A Equine herpes virus-1 r 98.9 4E-10 1.4E-14 88.9 3.9 47 109-164 4-51 (68)
41 2kiz_A E3 ubiquitin-protein li 98.9 7.6E-10 2.6E-14 87.6 5.3 48 109-165 13-63 (69)
42 3l11_A E3 ubiquitin-protein li 98.9 1.1E-10 3.6E-15 102.0 0.2 48 109-164 14-61 (115)
43 1v87_A Deltex protein 2; ring- 98.9 8.2E-10 2.8E-14 95.9 5.3 53 109-165 24-94 (114)
44 2l0b_A E3 ubiquitin-protein li 98.9 6E-10 2.1E-14 93.6 3.8 48 109-165 39-89 (91)
45 2ecn_A Ring finger protein 141 98.9 2.4E-10 8.2E-15 90.8 1.2 50 108-167 13-62 (70)
46 1x4j_A Ring finger protein 38; 98.9 5.4E-10 1.8E-14 90.1 3.1 49 108-165 21-72 (75)
47 1iym_A EL5; ring-H2 finger, ub 98.9 6.8E-10 2.3E-14 83.9 3.1 47 108-163 3-53 (55)
48 3knv_A TNF receptor-associated 98.9 3.7E-10 1.3E-14 102.8 1.8 52 107-166 28-79 (141)
49 2ep4_A Ring finger protein 24; 98.9 1.1E-09 3.7E-14 87.9 4.2 48 109-165 14-64 (74)
50 3htk_C E3 SUMO-protein ligase 98.8 1.1E-09 3.8E-14 108.8 4.1 57 107-170 178-237 (267)
51 4ap4_A E3 ubiquitin ligase RNF 98.8 9.1E-10 3.1E-14 97.1 3.0 57 108-173 70-133 (133)
52 3hcs_A TNF receptor-associated 98.8 1.9E-09 6.4E-14 100.4 4.5 56 107-170 15-70 (170)
53 1bor_A Transcription factor PM 98.8 1E-09 3.5E-14 84.1 1.4 46 108-165 4-49 (56)
54 2y1n_A E3 ubiquitin-protein li 98.7 3.3E-09 1.1E-13 111.1 3.9 51 109-167 331-381 (389)
55 2ecl_A Ring-box protein 2; RNF 98.7 7E-09 2.4E-13 85.3 3.8 49 109-166 14-77 (81)
56 2bay_A PRE-mRNA splicing facto 98.7 7.2E-09 2.5E-13 81.1 3.3 54 110-172 3-57 (61)
57 2vje_A E3 ubiquitin-protein li 98.7 9.3E-09 3.2E-13 81.0 3.4 48 108-164 6-56 (64)
58 4ic3_A E3 ubiquitin-protein li 98.6 6E-09 2.1E-13 84.2 1.5 44 109-165 23-67 (74)
59 2ecg_A Baculoviral IAP repeat- 98.6 9.8E-09 3.4E-13 83.0 2.3 44 109-165 24-68 (75)
60 2vje_B MDM4 protein; proto-onc 98.6 1.7E-08 5.8E-13 79.2 3.1 47 109-164 6-55 (63)
61 1wim_A KIAA0161 protein; ring 98.5 1E-08 3.5E-13 86.3 -0.2 61 108-169 3-70 (94)
62 3dpl_R Ring-box protein 1; ubi 98.5 6.9E-08 2.4E-12 83.8 4.3 47 109-164 36-100 (106)
63 2ea5_A Cell growth regulator w 98.4 9.5E-08 3.2E-12 76.2 3.6 45 108-165 13-58 (68)
64 2yho_A E3 ubiquitin-protein li 98.4 5.5E-08 1.9E-12 79.8 1.4 44 109-165 17-61 (79)
65 4a0k_B E3 ubiquitin-protein li 98.2 1.1E-07 3.9E-12 83.9 -0.3 46 110-164 48-111 (117)
66 3t6p_A Baculoviral IAP repeat- 98.2 2E-07 6.7E-12 96.7 0.7 44 109-165 294-338 (345)
67 2d8s_A Cellular modulator of i 98.1 1.6E-06 5.5E-11 71.4 4.4 51 108-165 13-70 (80)
68 3vk6_A E3 ubiquitin-protein li 97.7 2.1E-05 7.2E-10 67.0 4.0 45 112-164 3-48 (101)
69 2ct0_A Non-SMC element 1 homol 97.7 4.8E-05 1.6E-09 61.7 5.1 49 109-164 14-63 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.4 0.00013 4.4E-09 56.7 4.1 50 108-164 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.3 5.6E-05 1.9E-09 77.7 0.9 56 109-164 307-372 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.012 4.2E-07 49.3 2.8 33 109-141 2-37 (101)
73 3nw0_A Non-structural maintena 94.6 0.026 8.8E-07 55.3 4.7 50 109-165 179-229 (238)
74 3m62_A Ubiquitin conjugation f 91.5 0.13 4.6E-06 59.3 4.8 57 105-170 886-943 (968)
75 2cs3_A Protein C14ORF4, MY039 89.4 0.15 5.1E-06 41.7 2.0 36 109-144 14-53 (93)
76 2ko5_A Ring finger protein Z; 85.2 0.41 1.4E-05 40.3 2.3 47 109-166 27-74 (99)
77 3i2d_A E3 SUMO-protein ligase 83.1 1 3.6E-05 46.7 4.8 53 110-169 249-304 (371)
78 4fo9_A E3 SUMO-protein ligase 80.1 1.5 5.1E-05 45.3 4.7 53 110-169 215-270 (360)
79 3mpx_A FYVE, rhogef and PH dom 73.0 0.72 2.5E-05 48.0 0.0 54 109-164 374-431 (434)
80 1z2q_A LM5-1; membrane protein 61.0 4.1 0.00014 33.0 2.3 58 106-164 17-78 (84)
81 1x4u_A Zinc finger, FYVE domai 57.8 4.2 0.00014 32.9 1.8 34 106-139 10-47 (84)
82 1joc_A EEA1, early endosomal a 57.3 2.9 9.9E-05 36.7 0.8 32 109-140 68-103 (125)
83 2yw8_A RUN and FYVE domain-con 55.2 4.3 0.00015 32.8 1.4 55 106-163 15-73 (82)
84 1wfk_A Zinc finger, FYVE domai 52.8 4.7 0.00016 33.2 1.3 32 108-139 7-42 (88)
85 4g9i_A Hydrogenase maturation 51.6 6.1 0.00021 44.8 2.4 57 107-164 103-189 (772)
86 3ttc_A HYPF, transcriptional r 50.4 6.6 0.00023 43.7 2.4 57 106-163 13-99 (657)
87 3t7l_A Zinc finger FYVE domain 49.5 6.6 0.00022 32.3 1.7 52 109-163 19-74 (90)
88 3vth_A Hydrogenase maturation 46.3 7.2 0.00025 44.1 1.9 56 107-163 108-193 (761)
89 1dvp_A HRS, hepatocyte growth 45.4 5.4 0.00019 37.9 0.6 29 111-139 162-194 (220)
90 3zyq_A Hepatocyte growth facto 44.1 9.7 0.00033 36.5 2.2 52 111-163 165-220 (226)
91 1wd2_A Ariadne-1 protein homol 43.6 3.5 0.00012 31.5 -0.8 33 110-142 6-46 (60)
92 1y02_A CARP2, FYVE-ring finger 43.2 6.6 0.00023 34.3 0.8 31 109-139 18-52 (120)
93 1vfy_A Phosphatidylinositol-3- 38.5 9.5 0.00032 30.0 0.9 28 111-138 12-43 (73)
94 2fiy_A Protein FDHE homolog; F 35.9 2.3 8E-05 43.0 -3.8 45 109-162 181-231 (309)
95 3mjh_B Early endosome antigen 34.7 7.1 0.00024 26.7 -0.3 16 108-123 3-18 (34)
96 2rgt_A Fusion of LIM/homeobox 34.6 37 0.0013 30.4 4.4 50 107-167 30-79 (169)
97 1m3v_A FLIN4, fusion of the LI 33.8 20 0.00067 30.6 2.3 50 109-167 31-83 (122)
98 2jne_A Hypothetical protein YF 31.1 1.8 6.1E-05 36.6 -4.6 42 109-164 31-72 (101)
99 1wil_A KIAA1045 protein; ring 30.7 50 0.0017 27.1 4.0 52 109-160 14-74 (89)
100 2xqn_T Testin, TESS; metal-bin 30.0 34 0.0012 28.9 3.2 49 108-167 28-77 (126)
101 2ct7_A Ring finger protein 31; 28.8 22 0.00075 28.7 1.6 14 127-140 48-61 (86)
102 2lri_C Autoimmune regulator; Z 28.2 43 0.0015 25.8 3.2 49 109-162 11-59 (66)
103 1z60_A TFIIH basal transcripti 27.1 29 0.00098 26.5 1.9 40 111-159 16-58 (59)
104 1weo_A Cellulose synthase, cat 26.8 97 0.0033 25.7 5.1 48 109-164 15-69 (93)
105 2d8v_A Zinc finger FYVE domain 26.8 27 0.00093 27.3 1.7 32 109-141 7-39 (67)
106 2jtn_A LIM domain-binding prot 26.8 33 0.0011 31.2 2.7 50 107-167 84-133 (182)
107 2k16_A Transcription initiatio 26.5 21 0.00071 27.9 1.1 52 109-165 17-71 (75)
108 2jmo_A Parkin; IBR, E3 ligase, 23.6 5.8 0.0002 31.9 -2.8 14 127-140 55-68 (80)
109 2xjy_A Rhombotin-2; oncoprotei 23.0 57 0.002 27.6 3.3 52 107-167 26-80 (131)
110 2lbm_A Transcriptional regulat 21.2 64 0.0022 28.8 3.3 46 110-161 63-116 (142)
111 3o36_A Transcription intermedi 20.3 20 0.00068 32.9 -0.3 49 109-162 3-51 (184)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.24 E-value=5.4e-12 Score=102.51 Aligned_cols=56 Identities=30% Similarity=0.437 Sum_probs=48.9
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.++.+.||||++.+.+|++++|||+||..||.+|+..+ ...||+|+..+...++.+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--------~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--------HKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--------CCBCTTTCCBCSSCCCEE
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--------cCCCCCCcCCCChhhCcc
Confidence 34678999999999999999999999999999999742 378999999998777655
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.22 E-value=3.5e-12 Score=101.44 Aligned_cols=57 Identities=33% Similarity=0.646 Sum_probs=49.5
Q ss_pred CCCcccccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEE
Q 009749 107 NPLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P-------~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 172 (527)
..+...|+||++.+..| ++++|||+||..||..|+... ..||+||..+...++++++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---------CCCCCCCCccChhheeecc
Confidence 34678999999998877 789999999999999999853 6899999999988887754
No 3
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=6.5e-12 Score=98.72 Aligned_cols=57 Identities=23% Similarity=0.523 Sum_probs=47.9
Q ss_pred CcccccccCc-CCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 009749 109 LSVQCPICLE-YPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (527)
Q Consensus 109 e~~~CPICle-~~~~P----~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (527)
++..||||++ .+.+| ++++|||+||..||.+|+... ...||+||..+..++++++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------AGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--------SSSCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--------CCcCCCCCCccccccceeecc
Confidence 4678999999 77777 468999999999999998742 268999999999998887654
No 4
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.1e-12 Score=98.78 Aligned_cols=53 Identities=26% Similarity=0.558 Sum_probs=46.3
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (527)
.+.+.||||++.+.+|++++|||+||..||..|+.. ....||+||..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS--------SSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT--------SSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh--------CcCCCCCCCcCCChhhc
Confidence 457899999999999999999999999999999962 23689999999887665
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=99.41 Aligned_cols=55 Identities=36% Similarity=0.762 Sum_probs=46.9
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCc
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKEL 168 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L 168 (527)
.+...||||++.+..|++++|||.||..||..|+.... ....||+||..+...++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC------SCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC------CCCCCCCCCCcCCcccC
Confidence 46789999999999999999999999999999987321 23799999999877664
No 6
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.18 E-value=9.7e-12 Score=106.41 Aligned_cols=55 Identities=27% Similarity=0.652 Sum_probs=48.6
Q ss_pred CcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 109 e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
+.+.||||++.+..|+. ++|||+||..||..|+.... ..||+||.++...++...
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--------AQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEEC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc--------CCCCCCCCcCCHHHhHhh
Confidence 57899999999999999 99999999999999998642 689999999987777653
No 7
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.17 E-value=7e-12 Score=97.37 Aligned_cols=55 Identities=35% Similarity=0.675 Sum_probs=48.0
Q ss_pred CcccccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEE
Q 009749 109 LSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (527)
Q Consensus 109 e~~~CPICle~~~~P-------~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 172 (527)
+...|+||++.+..+ ++++|||+||..||.+|+... ..||+||..+...++.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---------SBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---------CCCCCCCccCCccceeeee
Confidence 457899999988776 789999999999999999852 6899999999998888764
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=97.66 Aligned_cols=53 Identities=26% Similarity=0.709 Sum_probs=46.6
Q ss_pred CcccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
+...||||++.+.+|+++ +|||+||..||..|+... ..||+||..+...++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS---------NRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC---------SSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC---------CcCCCcCcccCcccccc
Confidence 567999999999999986 999999999999999752 68999999998877654
No 9
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=8.5e-12 Score=107.87 Aligned_cols=70 Identities=36% Similarity=0.631 Sum_probs=53.2
Q ss_pred CcchhhhhhhcCCCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 95 LQWEDIICVRYSNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 95 v~w~~I~~v~~~~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
..|+.+........+.+.||||++.+..|++++|||.||..||..|+.... ....||+|+..+...++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK------GPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp SSHHHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS------SSCCCTTTSCCCCTTTCBC
T ss_pred HHHHHHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC------CCCCCcCCCCcCCHhhcCc
Confidence 345554433222335679999999999999999999999999999998542 2368999999887665543
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.14 E-value=3e-11 Score=100.64 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=49.8
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
.++.+.||||++.+.+|++++|||+||..||..|+... ..||+|+.++...+|.+.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~---------~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS---------PTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCCBCCGGGCEEC
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC---------CCCCCCcCCCChHhcchH
Confidence 35789999999999999999999999999999999842 689999999988777663
No 11
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.14 E-value=3e-11 Score=101.16 Aligned_cols=56 Identities=30% Similarity=0.595 Sum_probs=46.7
Q ss_pred CCcccccccCcCCCCceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc-cCCCcee
Q 009749 108 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI-SSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i-~~~~L~~ 170 (527)
.+.+.||||++.+.+|++++ |||+||..||..|+.... ...||+||..+ ....+.+
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-------TCCCTTTCCSSCCTTSCEE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-------CCcCcCCCCcCCCccccCc
Confidence 46789999999999999999 999999999999997532 26899999987 4445543
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=5.5e-11 Score=97.17 Aligned_cols=59 Identities=34% Similarity=0.612 Sum_probs=49.5
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
+.+.||||++.+..|++++|||.||..||..|+...... .....||+|+..+...++.+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNT---DGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCT---TSCBCCTTTCCCCCTTCCEE
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCC---CCCCCCCCCCCcCCHHhCCc
Confidence 567999999999999999999999999999999874210 12479999999998877765
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.9e-11 Score=99.13 Aligned_cols=57 Identities=30% Similarity=0.645 Sum_probs=47.8
Q ss_pred CCcccccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 108 PLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~----P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.+...||||++.+.. |++++|||.||..||..|+.... ....||+||..+...++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCPFCSKITRITSLTQ 73 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCTTTCCCBCCSSTTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCCCCCCcccchhHHH
Confidence 356899999999988 99999999999999999998642 2379999999987766543
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=97.54 Aligned_cols=52 Identities=31% Similarity=0.600 Sum_probs=44.2
Q ss_pred CCcccccccCcCCCCceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 108 PLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
.+.+.||||++.+.+|++++ |||+||..||..|+.... ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-------~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-------EHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-------SSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-------CCcCCCCCCcCCCc
Confidence 35689999999999999999 999999999999998531 36899999975443
No 15
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.12 E-value=3.7e-11 Score=103.32 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=50.1
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
.++.+.||||++.+.+|++++|||+||..||..|+.. ...||+|+.++...+|.+.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---------SPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---------CSBCSSSCCBCCTTSSEEC
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---------CCCCCCCCCCCChhhceEC
Confidence 4678999999999999999999999999999999973 2689999999988888764
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.2e-11 Score=97.10 Aligned_cols=47 Identities=30% Similarity=0.646 Sum_probs=42.8
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
..+.|+||++.+..|++++|||+||..||..|+... ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT---------PRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC---------SBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC---------CcCCCcCcccc
Confidence 467899999999999999999999999999999742 68999999986
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.11 E-value=1.2e-11 Score=100.30 Aligned_cols=61 Identities=31% Similarity=0.551 Sum_probs=49.1
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.+.+.||||++.+.+|++++|||+||..||..|+....... .....||+||..+...++.+
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~--~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSM--GGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSC--CCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCC--CCCCcCCCCCCcCCHhhCCc
Confidence 35789999999999999999999999999999987532110 12479999999998766654
No 18
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=5e-11 Score=105.49 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=45.6
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC-CCce
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS-KELY 169 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~-~~L~ 169 (527)
+.+.||||++.+..|++++|||+||..||..|+... ...||+||..+.. ..+.
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~ 104 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--------VFSCPACRYDLGRSYAMQ 104 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTTCCCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC--------cCCCCCCCccCCCCCCCC
Confidence 467899999999999999999999999999999832 3699999999976 4443
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=98.18 Aligned_cols=52 Identities=33% Similarity=0.675 Sum_probs=45.1
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
+...|+||++.+..|++++|||+||..||..|+.. ...||+||..+...++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL---------GKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC---------SSBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC---------CCcCcCcCchhCHhhcc
Confidence 56789999999999999999999999999999863 26899999998765543
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.09 E-value=3.2e-11 Score=108.95 Aligned_cols=47 Identities=34% Similarity=0.708 Sum_probs=41.9
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
+++.||||++.+.+|++++|||.||..||..|+.. ...||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR---------KIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT---------CSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc---------CCcCCCCCCcCC
Confidence 45789999999999999999999999999999863 368999998874
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.6e-11 Score=91.86 Aligned_cols=46 Identities=43% Similarity=0.896 Sum_probs=40.1
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
.+.+.||||++.+.+|++++|||+||..||.+|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC------GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS------SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC------CCCcCcCC
Confidence 46789999999999999999999999999999998532 23689998
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=3.1e-11 Score=102.60 Aligned_cols=53 Identities=32% Similarity=0.743 Sum_probs=46.4
Q ss_pred CcccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
+.+.||||++.+..|+++ +|||.||..||..|+.. ...||+|+..+...++.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY---------KTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---------CCBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC---------CCCCCCCCCcCChhhCCc
Confidence 568999999999999987 89999999999999973 268999999998766654
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=7.6e-11 Score=96.35 Aligned_cols=60 Identities=30% Similarity=0.623 Sum_probs=48.9
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.+...||||++.+..|++++|||+||..||..|+...... .....||+|+..+...++.+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~---~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLD---KGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHT---TSCCCCTTTCCSSCSSSCCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcC---CCCCcCCCCCCccCHHhcCc
Confidence 3568999999999999999999999999999999862100 02479999999998877654
No 24
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.08 E-value=8e-11 Score=100.83 Aligned_cols=56 Identities=13% Similarity=-0.020 Sum_probs=50.1
Q ss_pred CCCcccccccCcCCCCceEcCCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 107 NPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CG-HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
.++.+.||||++.+.+|++++|| |+||..||..|+.. ...||+|+.++...+|.+.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---------DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---------SCBCTTTCSBCCTTTSEEC
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---------CCCCCCCCCCCChhhceEc
Confidence 35789999999999999999999 99999999999974 2589999999988888764
No 25
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=6.9e-11 Score=93.07 Aligned_cols=49 Identities=35% Similarity=0.735 Sum_probs=42.3
Q ss_pred CCcccccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~~~~P-------~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+...|+||++.+..+ ++++|||+||..||..|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC---------SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC---------CCCCCCCCccCc
Confidence 3567899999988776 789999999999999999852 689999998754
No 26
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=1e-10 Score=115.81 Aligned_cols=56 Identities=20% Similarity=0.095 Sum_probs=49.3
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.+..+.||||++.+.+|++++|||+||..||.+|+.... ..||+|+.++...++.+
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--------~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--------SSCTTTCCCCCGGGCEE
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--------CCCcCCCCCCchhcCcc
Confidence 456889999999999999999999999999999998632 35999999998877766
No 27
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=106.36 Aligned_cols=50 Identities=26% Similarity=0.503 Sum_probs=45.0
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
+.+.||||++.+.+|++++|||+||..||..|+... ...||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--------VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC--------CCcCCCCCccCCCC
Confidence 468999999999999999999999999999999852 25899999999876
No 28
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=3.2e-11 Score=105.84 Aligned_cols=69 Identities=23% Similarity=0.500 Sum_probs=52.1
Q ss_pred ccccCcchhhhhhhcCCCCcccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 91 PDKMLQWEDIICVRYSNPLSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 91 pd~~v~w~~I~~v~~~~~e~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
++...+|...........+.+.||||++.+..|+++ +|||+||..||..|+. ..||+|+..+...++.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 3 PDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp SSTTCCCHHHHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCSCSSCC
T ss_pred CCcccCccchHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCcccccc
Confidence 445556744322222234678999999999999998 9999999999999875 4799999988665554
Q ss_pred e
Q 009749 170 T 170 (527)
Q Consensus 170 ~ 170 (527)
+
T Consensus 72 ~ 72 (117)
T 1jm7_B 72 I 72 (117)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=1.7e-10 Score=101.46 Aligned_cols=55 Identities=29% Similarity=0.662 Sum_probs=48.2
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
.+.+.||||++.+..|++++|||+||..||..|+.... ..||+||..+...++.+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--------CCCCCCCCCcCHHhccc
Confidence 46789999999999999999999999999999998532 48999999998776654
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.00 E-value=1.8e-10 Score=99.42 Aligned_cols=49 Identities=33% Similarity=0.748 Sum_probs=43.5
Q ss_pred CcccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 109 e~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
+.+.||||++.+.+|+.+ +|||+||..||..|+... ..||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS---------KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC---------SBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC---------CcCcCCCcccccc
Confidence 578999999999999987 999999999999999742 6899999988654
No 31
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.00 E-value=7e-11 Score=109.61 Aligned_cols=49 Identities=39% Similarity=0.760 Sum_probs=42.9
Q ss_pred CcccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+.+.||||++.+..|+.+ +|||+||..||..|+... ...||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--------NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--------CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--------cCCCCCCCCcCCC
Confidence 457999999999999987 999999999999999842 2689999998854
No 32
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2.2e-10 Score=97.03 Aligned_cols=61 Identities=23% Similarity=0.393 Sum_probs=48.7
Q ss_pred CCCcccccccCcCCCCceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--Cccc-ccCCCcee
Q 009749 107 NPLSVQCPICLEYPLCPQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM-ISSKELYT 170 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~-i~~~~L~~ 170 (527)
..+.+.||||++.+.+|++++ |||+||..||..|+....+. .....||+ |+.. +...+|.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~---~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKR---KKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTT---TCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCc---CCCCCCCcCcCcccccCHhhCcC
Confidence 346789999999999999995 99999999999999853100 02368999 9877 77777765
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.3e-10 Score=87.25 Aligned_cols=45 Identities=38% Similarity=0.862 Sum_probs=39.0
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
+...|+||++.+..|++++|||+||..||..|+.... ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE------RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC------CSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC------CCCCCCCC
Confidence 5679999999999999999999999999999986421 23789998
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.98 E-value=1.9e-10 Score=93.24 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=44.0
Q ss_pred CcccccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P---~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
....|+||++.+..+ +.++|||+||..||.+|+.. ...||+||..+...++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---------HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---------TCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---------CCcCcCcCCccCCcccCC
Confidence 567899999988755 45799999999999999963 268999999998776654
No 35
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.97 E-value=3.2e-10 Score=99.08 Aligned_cols=54 Identities=35% Similarity=0.637 Sum_probs=47.2
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
+.+.||||++.+.+|+.++|||+||..||.+|+.... ..||+||..+...++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMG--------SYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc--------CcCCCCCCCCCHhhccc
Confidence 4678999999999999999999999999999998632 68999999998776653
No 36
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.97 E-value=3.2e-10 Score=85.58 Aligned_cols=48 Identities=40% Similarity=0.722 Sum_probs=40.8
Q ss_pred CCcccccccCcCCCC----ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 108 PLSVQCPICLEYPLC----PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 108 ~e~~~CPICle~~~~----P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.....|+||++.+.. +++++|||+||..||..|+... ..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCCCCCCcCC
Confidence 356789999998855 6789999999999999999853 68999998764
No 37
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.96 E-value=3.7e-10 Score=106.82 Aligned_cols=58 Identities=19% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeE
Q 009749 106 SNPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTI 171 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v 171 (527)
..++.+.||||++.+.+|++++|||+||..||..|+.... ..||+|+.++...+|.+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--------~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEEC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--------CCCCCCcCCCChhhCcch
Confidence 3567899999999999999999999999999999998632 369999999988887764
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=4.8e-10 Score=92.14 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=42.8
Q ss_pred CCcccccccCcCCC--CceEcC--CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 108 PLSVQCPICLEYPL--CPQITS--CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 108 ~e~~~CPICle~~~--~P~it~--CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
.++..||||++++. ++++++ |||.||..|+.+++... ...||.||.++....+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--------~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--------NGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--------CSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--------CCCCCCCCCccCCCchh
Confidence 46789999999874 345554 99999999999988532 37899999999876653
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=2.4e-10 Score=100.85 Aligned_cols=57 Identities=35% Similarity=0.675 Sum_probs=49.0
Q ss_pred CCcccccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 009749 108 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (527)
Q Consensus 108 ~e~~~CPICle~~~~P-------~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (527)
.+.+.||||++.+..| +.++|||+||..||.+|+... ..||+|+..+...++.++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC---------SBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC---------CCCCCCCCcCcccccccccc
Confidence 4678999999999888 899999999999999999742 58999999998888776433
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.94 E-value=4e-10 Score=88.87 Aligned_cols=47 Identities=38% Similarity=0.911 Sum_probs=41.2
Q ss_pred CcccccccCcCCCCc-eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCP-QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P-~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....|+||++.+..+ +.++|||.||..|+..|+... ..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---------PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS---------CSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc---------CcCcCCChhhH
Confidence 467899999999886 688999999999999999742 68999998875
No 41
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=7.6e-10 Score=87.58 Aligned_cols=48 Identities=33% Similarity=0.702 Sum_probs=40.2
Q ss_pred CcccccccCcCCC---CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~---~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
....|+||++.+. .++.++|||+||..||..|+... ..||+||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCcCcCccccC
Confidence 5678999998774 45678999999999999999853 579999998754
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.93 E-value=1.1e-10 Score=101.97 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=42.2
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
+.+.||||++.+..|++++|||+||..||..|+... ...||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA--------SLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT--------TSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC--------cCCCCCCCcccC
Confidence 467899999999999999999999999999998632 378999998774
No 43
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.92 E-value=8.2e-10 Score=95.94 Aligned_cols=53 Identities=28% Similarity=0.639 Sum_probs=41.6
Q ss_pred CcccccccCcCCCCce------------------EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQ------------------ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~------------------it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+..|+||++.+..+. +++|||+||..||..|+..... .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~----~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK----DGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC----SSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC----CCCCcCCCCCCccCC
Confidence 4568999999886553 7899999999999999975321 124799999998754
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.90 E-value=6e-10 Score=93.59 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=40.6
Q ss_pred CcccccccCcCCCC---ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~---P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+...|+||++.+.. ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCcCcCccCCC
Confidence 56789999988876 667899999999999999963 2689999988753
No 45
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.4e-10 Score=90.77 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=43.2
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
.+...|+||++.+.. ++++|||.||..||.+|+.. ...||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---------HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---------CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---------cCcCCCcCCcccCCC
Confidence 356799999999988 89999999999999999862 378999999887654
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=5.4e-10 Score=90.11 Aligned_cols=49 Identities=20% Similarity=0.534 Sum_probs=41.5
Q ss_pred CCcccccccCcCCCCc---eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEYPLCP---QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~~~~P---~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+...|+||++.+..+ +.++|||+||..||..|+... ..||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------CcCcCcCCcCCC
Confidence 3567899999988776 678999999999999999853 589999988754
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.88 E-value=6.8e-10 Score=83.87 Aligned_cols=47 Identities=30% Similarity=0.653 Sum_probs=39.3
Q ss_pred CCcccccccCcCCCC---ceEcC-CCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 108 PLSVQCPICLEYPLC---PQITS-CGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 108 ~e~~~CPICle~~~~---P~it~-CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
.+...|+||++.+.. ++.++ |||+||..||..|+.. ...||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCcCCCCEe
Confidence 356789999998876 66776 9999999999999864 26899999876
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.88 E-value=3.7e-10 Score=102.79 Aligned_cols=52 Identities=23% Similarity=0.454 Sum_probs=44.7
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
..+.+.||||++.+.+|+.++|||.||..||..|+... ...||+||..+...
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--------PQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--------CEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--------CCCCCCCCCccccc
Confidence 34678999999999999999999999999999999743 25899999976443
No 49
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=87.87 Aligned_cols=48 Identities=33% Similarity=0.705 Sum_probs=40.1
Q ss_pred CcccccccCcCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~---it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
....|+||++.+..+. +++|||+||..||..|+... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCCCcCccccc
Confidence 4678999999987655 44999999999999999853 589999998754
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.1e-09 Score=108.77 Aligned_cols=57 Identities=26% Similarity=0.521 Sum_probs=49.2
Q ss_pred CCCcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--CcccccCCCcee
Q 009749 107 NPLSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVMISSKELYT 170 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~i~~~~L~~ 170 (527)
....+.||||++.+.+|+. +.|||+||..||..|+... ....||+ |+..+...+|.+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~-------~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY-------TTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC-------SCEECSGGGCSCEECGGGEEE
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC-------CCCCCCcccccCcCchhhCCc
Confidence 4567999999999999997 5999999999999999742 2368999 999998888776
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=9.1e-10 Score=97.11 Aligned_cols=57 Identities=35% Similarity=0.675 Sum_probs=49.6
Q ss_pred CCcccccccCcCCCCc-------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEEe
Q 009749 108 PLSVQCPICLEYPLCP-------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIHI 173 (527)
Q Consensus 108 ~e~~~CPICle~~~~P-------~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~~ 173 (527)
.+...|+||++.+..+ +.++|||+||..||.+|+... ..||+||..+..+++.++++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---------SBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---------CCCCCCCCcCChhcceeeeC
Confidence 4667899999988766 788999999999999999853 69999999999999888653
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=1.9e-09 Score=100.36 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=48.8
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
..+.+.||||++.+..|+.++|||+||..||..|+.... ..||+||..+...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC--------CCCCCCccCcchhhhhh
Confidence 346789999999999999999999999999999998532 48999999998877654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1e-09 Score=84.06 Aligned_cols=46 Identities=24% Similarity=0.604 Sum_probs=39.5
Q ss_pred CCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+.+.|+||++.+..|++++|||.||..||..+ ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------------GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------------SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------------CCCCCcCCcEeec
Confidence 356889999999999999999999999998661 2689999998754
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=3.3e-09 Score=111.14 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=44.3
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
....|+||++.+..|++++|||.||..|+..|+... ...||+||..+....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--------~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--------GQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--------CSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--------CCCCCCCCCccCCce
Confidence 347999999999999999999999999999999742 268999999887644
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=7e-09 Score=85.29 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=38.5
Q ss_pred CcccccccCcCCCC--------------ce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 109 LSVQCPICLEYPLC--------------PQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 109 e~~~CPICle~~~~--------------P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
+...|+||++.+.. ++ +++|||+||..||.+|+... ..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------NRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------CBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------CCCCCcCCCcchh
Confidence 45679999988765 33 44699999999999999742 5899999987543
No 56
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.69 E-value=7.2e-09 Score=81.13 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=48.1
Q ss_pred cccccccCcCCCCceEc-CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCceeEE
Q 009749 110 SVQCPICLEYPLCPQIT-SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYTIH 172 (527)
Q Consensus 110 ~~~CPICle~~~~P~it-~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~v~ 172 (527)
.+.||||++.+.+|+++ +|||+||..||.+|+... ..||+++.++...+|.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~---------~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---------GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH---------SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC---------CCCcCCcCCCChhhcEECc
Confidence 46899999999999999 999999999999999842 4699999999999998864
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.67 E-value=9.3e-09 Score=80.99 Aligned_cols=48 Identities=31% Similarity=0.600 Sum_probs=41.6
Q ss_pred CCcccccccCcCCCCceEc--CCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 108 PLSVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it--~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.+...|+||++.+.+++++ +|||. ||..|+..|+... ..||+||.++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---------KPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT---------CCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC---------CcCCCcCcchh
Confidence 3567899999999999977 99999 8999999998732 58999999884
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.64 E-value=6e-09 Score=84.23 Aligned_cols=44 Identities=27% Similarity=0.827 Sum_probs=38.9
Q ss_pred CcccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+...|+||++.+.++++++|||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------------ccCCCcCcCccC
Confidence 46789999999999999999999 999998654 589999998853
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=9.8e-09 Score=83.04 Aligned_cols=44 Identities=27% Similarity=0.836 Sum_probs=38.4
Q ss_pred CcccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+...|+||++.+.+|++++|||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------------CCCCccCCceecC
Confidence 45789999999999999999999 99999843 2689999998854
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.60 E-value=1.7e-08 Score=79.23 Aligned_cols=47 Identities=32% Similarity=0.703 Sum_probs=40.7
Q ss_pred CcccccccCcCCCCceEc--CCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQIT--SCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~it--~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....|+||++.+.+++++ +|||. ||+.|+.+++... ..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG---------ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT---------CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC---------CcCCCcCchhh
Confidence 356899999999999877 99998 9999999988642 68999999884
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=1e-08 Score=86.34 Aligned_cols=61 Identities=28% Similarity=0.477 Sum_probs=44.4
Q ss_pred CCcccccccCcCCCCceEc---CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCC--Cccc--ccCCCce
Q 009749 108 PLSVQCPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPL--CFVM--ISSKELY 169 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it---~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPl--Cr~~--i~~~~L~ 169 (527)
.+.+.|+||++.+..+.++ +|||.||..||.+|+......+.. ....||. |+.. +....++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~-~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLE-TAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSC-CCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCc-ccccCccccCCCCCccCHHHHH
Confidence 4567899999998887654 799999999999999863111110 2368999 9987 6554443
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.49 E-value=6.9e-08 Score=83.79 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=38.5
Q ss_pred CcccccccCcCCCCc------------------eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCP------------------QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P------------------~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
+...|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCcCCCCcce
Confidence 456799999887654 35799999999999999974 268999999764
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=9.5e-08 Score=76.21 Aligned_cols=45 Identities=24% Similarity=0.673 Sum_probs=39.0
Q ss_pred CCcccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+...|+||++.+.++++++|||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------------CCCCCCCCcchhc
Confidence 356789999999999999999999 99999873 1589999998854
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.41 E-value=5.5e-08 Score=79.81 Aligned_cols=44 Identities=27% Similarity=0.735 Sum_probs=38.3
Q ss_pred CcccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+...|+||++.+.++++++|||. ||..|+..+ ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------------SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------------CcCCCCCchhhC
Confidence 45689999999999999999999 999998642 589999998864
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.24 E-value=1.1e-07 Score=83.89 Aligned_cols=46 Identities=28% Similarity=0.498 Sum_probs=0.4
Q ss_pred cccccccCcCCCCc-----------------e-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 110 SVQCPICLEYPLCP-----------------Q-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 110 ~~~CPICle~~~~P-----------------~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
...|+||++.+..+ + .++|||.||..||..|+... ..||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---------~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------QVCPLDNREWE 111 (117)
T ss_dssp C------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---------CcCCCCCCeee
Confidence 45799999887653 2 25899999999999999752 68999998764
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=2e-07 Score=96.67 Aligned_cols=44 Identities=25% Similarity=0.807 Sum_probs=39.2
Q ss_pred CcccccccCcCCCCceEcCCCCc-ccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQITSCGHI-FCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHi-FC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+...|+||++.+.+|++++|||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------------CcCCCCCCCccC
Confidence 56899999999999999999999 999998754 589999998853
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.6e-06 Score=71.37 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=41.3
Q ss_pred CCcccccccCcCC--CCceEcCCC-----CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 108 PLSVQCPICLEYP--LCPQITSCG-----HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 108 ~e~~~CPICle~~--~~P~it~CG-----HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
.+...|.||++.+ ..+.+++|+ |.|+..||.+|+.... ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-------TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-------CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-------CCCCCCCCCeeec
Confidence 3567899999766 467788996 9999999999998642 2689999998854
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.71 E-value=2.1e-05 Score=67.05 Aligned_cols=45 Identities=29% Similarity=0.625 Sum_probs=37.8
Q ss_pred cccccCcCCC-CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 112 QCPICLEYPL-CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 112 ~CPICle~~~-~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.|++|.-++. -.++++|.|+||+.|+..|.+... ..||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~--------k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD--------KMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC--------CBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC--------CCCcCcCCeee
Confidence 5999987765 466999999999999999987543 79999999874
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=4.8e-05 Score=61.73 Aligned_cols=49 Identities=27% Similarity=0.576 Sum_probs=38.9
Q ss_pred CcccccccCcCCCCce-EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQ-ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~-it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....|.||.+.+.... ...|+|.|...||.+|++... ...||+|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-------EPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-------SCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-------CCCCCCCcCcCC
Confidence 3468999999876544 348999999999999997542 268999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.38 E-value=0.00013 Score=56.66 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=39.8
Q ss_pred CCcccccccCcCCCCceEcCCC--C---cccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 108 PLSVQCPICLEYPLCPQITSCG--H---IFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~it~CG--H---iFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
.+...|.||++....+.+.+|. | .|...||.+|+.... ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-------~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-------NTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-------CSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-------CCccCCCCCeee
Confidence 4567899999877777778865 4 899999999998632 378999998764
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.25 E-value=5.6e-05 Score=77.73 Aligned_cols=56 Identities=23% Similarity=0.508 Sum_probs=39.1
Q ss_pred CcccccccCcCCCC----ce----EcCCCCcccHHHHHHHHHcCCCCCC--CCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLC----PQ----ITSCGHIFCFPCILQYLLMGDEDYK--GDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~----P~----it~CGHiFC~~CI~~~l~~~~~~~k--~~~~~~CPlCr~~i~ 164 (527)
....|+||++.+.. |. ...|||.|+..||.+|+........ ..-...||.|+.++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45689999987665 21 2489999999999999986321000 001258999999875
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.92 E-value=0.012 Score=49.32 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=27.5
Q ss_pred CcccccccCcC-CCCceE--cCCCCcccHHHHHHHH
Q 009749 109 LSVQCPICLEY-PLCPQI--TSCGHIFCFPCILQYL 141 (527)
Q Consensus 109 e~~~CPICle~-~~~P~i--t~CGHiFC~~CI~~~l 141 (527)
++..|+||.+. +..|+. +.|||.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46789999964 677776 8999999999999743
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.65 E-value=0.026 Score=55.33 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=39.4
Q ss_pred CcccccccCcCCCCceE-cCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQI-TSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~i-t~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
....|.||.+....... ..|+|.|+..|+.+|+... ....||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~-------~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN-------AEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC-------SSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC-------CCCCCCCCCCCCCC
Confidence 46789999998776554 3599999999999999753 23699999887543
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.52 E-value=0.13 Score=59.28 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=50.0
Q ss_pred cCCCCcccccccCcCCCCceEcCCC-CcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCCcee
Q 009749 105 YSNPLSVQCPICLEYPLCPQITSCG-HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKELYT 170 (527)
Q Consensus 105 ~~~~e~~~CPICle~~~~P~it~CG-HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~~ 170 (527)
...++.+.|||-++.+.+|++++.| ++|-..+|.+|+... ..||.-+.++...++.+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~---------~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD---------STDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---------CBCTTTCCBCCGGGCEE
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC---------CCCCCCCCCCCcccccc
Confidence 3567899999999999999999998 589999999999742 58999999998877776
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.45 E-value=0.15 Score=41.65 Aligned_cols=36 Identities=31% Similarity=0.665 Sum_probs=30.8
Q ss_pred CcccccccCcCCCCceEcCC----CCcccHHHHHHHHHcC
Q 009749 109 LSVQCPICLEYPLCPQITSC----GHIFCFPCILQYLLMG 144 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~C----GHiFC~~CI~~~l~~~ 144 (527)
..+.|.+|.+-+.+.....| +|.||++|-..+++..
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 45789999999988877666 7999999999999864
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.21 E-value=0.41 Score=40.25 Aligned_cols=47 Identities=26% Similarity=0.644 Sum_probs=35.5
Q ss_pred CcccccccCcCCCCceEcCC-CCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCC
Q 009749 109 LSVQCPICLEYPLCPQITSC-GHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSK 166 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~C-GHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~ 166 (527)
..+.|-.|.-... -++.| -|..|..|+...+.. +..||+|..++..+
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~---------SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV---------SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS---------SSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhh---------ccCCcccCCcCCcc
Confidence 4578999986655 34455 599999999887764 36899999988543
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.07 E-value=1 Score=46.67 Aligned_cols=53 Identities=32% Similarity=0.597 Sum_probs=39.4
Q ss_pred cccccccCcCCCCce-EcCCCCcccHHH--HHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 110 SVQCPICLEYPLCPQ-ITSCGHIFCFPC--ILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 110 ~~~CPICle~~~~P~-it~CGHiFC~~C--I~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
.+.|||-...+..|+ -..|.|.-|+.- ++.+.... ....||+|...+...+|.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~-------~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI-------PTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS-------CCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC-------CceeCCCCCcccCHHHee
Confidence 578999999999998 468999966543 44443322 347899999988877765
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.09 E-value=1.5 Score=45.34 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=38.8
Q ss_pred cccccccCcCCCCce-EcCCCCcccHH--HHHHHHHcCCCCCCCCCcCCCCCCcccccCCCce
Q 009749 110 SVQCPICLEYPLCPQ-ITSCGHIFCFP--CILQYLLMGDEDYKGDCFKRCPLCFVMISSKELY 169 (527)
Q Consensus 110 ~~~CPICle~~~~P~-it~CGHiFC~~--CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~L~ 169 (527)
.+.|||-...+..|. -..|.|.-|+. -++.+.... ....||+|...+...+|.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~-------~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK-------PTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHS-------CCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhC-------CCeECCCCCcccCHHHeE
Confidence 578999999999888 46899996654 333333322 247899999988877765
No 79
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=73.00 E-value=0.72 Score=48.03 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=0.0
Q ss_pred CcccccccCcCCCCc----eEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCP----QITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P----~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
+...|.+|...|.-- ....||++||..|.......... ..+..+.|-.|...+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~--~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL--KDRMAKVCDGCFGELK 431 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC--CCCcCEecHHHHHHHH
Confidence 456899999877532 24689999999998765543211 1123478888877654
No 80
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=60.98 E-value=4.1 Score=33.03 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCCCcccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 106 SNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
...+...|.+|...|.--. --.||++||..|.......... +..+..+.|-.|...+.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~-~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMR-GITEPERVCDACYLALR 78 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTT-TEEEEEECCHHHHHHHH
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCC-CCCCCCEECHHHHHHHh
Confidence 3445678999998875322 3589999999996543222110 00012356666655443
No 81
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.80 E-value=4.2 Score=32.94 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=24.8
Q ss_pred CCCCcccccccCcCCCCce----EcCCCCcccHHHHHH
Q 009749 106 SNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 139 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~----it~CGHiFC~~CI~~ 139 (527)
...+...|.+|...|.--. --.||.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3445678999998875322 358999999999543
No 82
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.33 E-value=2.9 Score=36.65 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=23.8
Q ss_pred CcccccccCcCCCCce----EcCCCCcccHHHHHHH
Q 009749 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQY 140 (527)
Q Consensus 109 e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~ 140 (527)
+...|.+|...|.--. .-.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4568999998875322 4589999999996543
No 83
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.24 E-value=4.3 Score=32.79 Aligned_cols=55 Identities=22% Similarity=0.518 Sum_probs=33.5
Q ss_pred CCCCcccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 106 SNPLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
...+...|.+|...|.--. --.||.+||..|....+.... .....+.|-.|...+
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHT
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHH
Confidence 3445678999998876332 358999999999754322111 011235666665544
No 84
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=52.80 E-value=4.7 Score=33.17 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=23.8
Q ss_pred CCcccccccCcCCCCce----EcCCCCcccHHHHHH
Q 009749 108 PLSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 139 (527)
Q Consensus 108 ~e~~~CPICle~~~~P~----it~CGHiFC~~CI~~ 139 (527)
.+...|.+|...|.--. .-.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 35568999998775322 358999999999644
No 85
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=51.60 E-value=6.1 Score=44.81 Aligned_cols=57 Identities=28% Similarity=0.471 Sum_probs=39.5
Q ss_pred CCCcccccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCCC
Q 009749 107 NPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKRC 156 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~----------it~CGHiF--------------------C~~CI~~~l~~~~~~~k~~~~~~C 156 (527)
.++.-.|+-|+..+.+|. .|.||-.| |..|-.+|-......... ....|
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhA-qp~aC 181 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHA-EPTAC 181 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTC-TTCCC
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcC-CCCCC
Confidence 567778999997655442 57788765 999999998654322111 24689
Q ss_pred CCCccccc
Q 009749 157 PLCFVMIS 164 (527)
Q Consensus 157 PlCr~~i~ 164 (527)
|.|.-.+.
T Consensus 182 ~~CGP~l~ 189 (772)
T 4g9i_A 182 PVCGPSYR 189 (772)
T ss_dssp TTTSCCEE
T ss_pred ccCCceEE
Confidence 99986653
No 86
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=50.38 E-value=6.6 Score=43.72 Aligned_cols=57 Identities=30% Similarity=0.535 Sum_probs=39.9
Q ss_pred CCCCcccccccCcCCCCce----------EcCCCCcc--------------------cHHHHHHHHHcCCCCCCCCCcCC
Q 009749 106 SNPLSVQCPICLEYPLCPQ----------ITSCGHIF--------------------CFPCILQYLLMGDEDYKGDCFKR 155 (527)
Q Consensus 106 ~~~e~~~CPICle~~~~P~----------it~CGHiF--------------------C~~CI~~~l~~~~~~~k~~~~~~ 155 (527)
..++.-.|+-|+..+.+|. .|.||-.| |..|..+|-.-....... ...-
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHA-qp~a 91 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHA-QPVA 91 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTC-TTCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcC-CCCc
Confidence 4567789999997655442 57788765 999999998754322211 2478
Q ss_pred CCCCcccc
Q 009749 156 CPLCFVMI 163 (527)
Q Consensus 156 CPlCr~~i 163 (527)
||.|.-.+
T Consensus 92 Cp~CGP~l 99 (657)
T 3ttc_A 92 CPECGPYL 99 (657)
T ss_dssp CTTTSCCE
T ss_pred CcccCccc
Confidence 99997665
No 87
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.50 E-value=6.6 Score=32.31 Aligned_cols=52 Identities=19% Similarity=0.405 Sum_probs=31.8
Q ss_pred CcccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 109 e~~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
+...|.+|...|.--. ...||++||..|......... ..+..+.|-.|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQY---LEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETT---TTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCC---CCCCCeECHHHHHHH
Confidence 4568999998775321 458999999999654332211 011235666665544
No 88
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=46.31 E-value=7.2 Score=44.15 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=38.1
Q ss_pred CCCcccccccCcCCCCce----------EcCCCCc--------------------ccHHHHHHHHHcCCCCCCCCCcCCC
Q 009749 107 NPLSVQCPICLEYPLCPQ----------ITSCGHI--------------------FCFPCILQYLLMGDEDYKGDCFKRC 156 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~----------it~CGHi--------------------FC~~CI~~~l~~~~~~~k~~~~~~C 156 (527)
.++.-.|+-|+..+.+|. .|.||-. +|..|..+|-.-....... ....|
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhA-qp~aC 186 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHA-QPVAC 186 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTC-TTCCC
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccC-CCCcC
Confidence 567788999997655442 5788855 4999999997654322111 24689
Q ss_pred CCCcccc
Q 009749 157 PLCFVMI 163 (527)
Q Consensus 157 PlCr~~i 163 (527)
|.|.-.+
T Consensus 187 ~~CGP~l 193 (761)
T 3vth_A 187 FDCGPSL 193 (761)
T ss_dssp TTTSCCE
T ss_pred CccCCee
Confidence 9997655
No 89
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.42 E-value=5.4 Score=37.93 Aligned_cols=29 Identities=24% Similarity=0.580 Sum_probs=21.9
Q ss_pred ccccccCcCCCCce----EcCCCCcccHHHHHH
Q 009749 111 VQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 139 (527)
Q Consensus 111 ~~CPICle~~~~P~----it~CGHiFC~~CI~~ 139 (527)
..|++|...|.--. .-.||++||..|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 58999998775321 458999999999543
No 90
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.10 E-value=9.7 Score=36.47 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=30.5
Q ss_pred ccccccCcCCCCce----EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 009749 111 VQCPICLEYPLCPQ----ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMI 163 (527)
Q Consensus 111 ~~CPICle~~~~P~----it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i 163 (527)
..|.+|...|.--. .-.||++||..|.......... +.....+.|-.|...+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~-~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKF-GIEKEVRVCEPCYEQL 220 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGG-TEEEEEEECHHHHHHH
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCC-CCCCCCEeCHHHHHHh
Confidence 48999998775322 4689999999996543221100 0001235666665544
No 91
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.63 E-value=3.5 Score=31.53 Aligned_cols=33 Identities=21% Similarity=0.565 Sum_probs=23.4
Q ss_pred cccccccCcCCCCc----eEc--C--CCCcccHHHHHHHHH
Q 009749 110 SVQCPICLEYPLCP----QIT--S--CGHIFCFPCILQYLL 142 (527)
Q Consensus 110 ~~~CPICle~~~~P----~it--~--CGHiFC~~CI~~~l~ 142 (527)
...||-|..+.... .|+ . ||+.||+.|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35799998776532 233 3 999999999877654
No 92
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.19 E-value=6.6 Score=34.30 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=22.4
Q ss_pred CcccccccCcCCCCce----EcCCCCcccHHHHHH
Q 009749 109 LSVQCPICLEYPLCPQ----ITSCGHIFCFPCILQ 139 (527)
Q Consensus 109 e~~~CPICle~~~~P~----it~CGHiFC~~CI~~ 139 (527)
+...|..|...|..-. .-.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 3458999998876432 458999999999644
No 93
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=38.54 E-value=9.5 Score=30.00 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=21.4
Q ss_pred ccccccCcCCCCce----EcCCCCcccHHHHH
Q 009749 111 VQCPICLEYPLCPQ----ITSCGHIFCFPCIL 138 (527)
Q Consensus 111 ~~CPICle~~~~P~----it~CGHiFC~~CI~ 138 (527)
..|.+|...|.--. --.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 48999998775322 35799999999953
No 94
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.89 E-value=2.3 Score=43.03 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=33.1
Q ss_pred CcccccccCcCCCCceEc----CCC--CcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 109 LSVQCPICLEYPLCPQIT----SCG--HIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 109 e~~~CPICle~~~~P~it----~CG--HiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
....||+|-..+...++. .=| +.+|..|-..|-.. ..+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~---------R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV---------RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC---------TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec---------CcCCcCCCCC
Confidence 457999999998877654 234 56788887777542 2699999875
No 95
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.68 E-value=7.1 Score=26.66 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=12.3
Q ss_pred CCcccccccCcCCCCc
Q 009749 108 PLSVQCPICLEYPLCP 123 (527)
Q Consensus 108 ~e~~~CPICle~~~~P 123 (527)
.+.+.||||+..+..+
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3568999999877665
No 96
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=34.57 E-value=37 Score=30.43 Aligned_cols=50 Identities=12% Similarity=0.302 Sum_probs=37.6
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
..+-+.|..|...+.......=|..||..|..+.+. .+|..|..+|...+
T Consensus 30 H~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 30 HSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------TKCAACQLGIPPTQ 79 (169)
T ss_dssp CTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----------CBCTTTCCBCCTTS
T ss_pred ccccCccCCCCCcCCCCCcccCCeeeeccccccccc-----------ccccccccccCCCc
Confidence 345688999998776544566789999999877553 68999998886543
No 97
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.77 E-value=20 Score=30.55 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=37.0
Q ss_pred CcccccccCcCCCC---ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 109 LSVQCPICLEYPLC---PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 109 e~~~CPICle~~~~---P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
+-+.|..|...+.. .....=|..||..|..+.+.. ..+|-.|..+|....
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~---------~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---------SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC---------CCSSSCSSCCSCCEE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC---------CCccccCCCCcCchh
Confidence 45789999988862 345677899999998876642 128999999887544
No 98
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.09 E-value=1.8 Score=36.56 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=27.4
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
-...||+|..++.- .=|+.+|..|-..|.. ...||-|..++.
T Consensus 31 M~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~----------~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----DNGHARCRSCGEFIEM----------KALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEE----ETTEEEETTTCCEEEE----------EEECTTTCSBCE
T ss_pred ccccCccCCCccee----cCCEEECccccchhhc----------cccCcchhhHHH
Confidence 34789999976541 1244458888544332 368999988774
No 99
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.68 E-value=50 Score=27.15 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=31.3
Q ss_pred CcccccccCcCCCCce--EcCCCCcccHHHHHHHHHcCCC-------CCCCCCcCCCCCCc
Q 009749 109 LSVQCPICLEYPLCPQ--ITSCGHIFCFPCILQYLLMGDE-------DYKGDCFKRCPLCF 160 (527)
Q Consensus 109 e~~~CPICle~~~~P~--it~CGHiFC~~CI~~~l~~~~~-------~~k~~~~~~CPlCr 160 (527)
.+..|+||-....... .-.|+-+|...|+.+--....+ ..+-.....||.|.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 5678999985432222 3468999999999885222111 11112346899993
No 100
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.95 E-value=34 Score=28.91 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCcccccccCcCCCC-ceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 108 PLSVQCPICLEYPLC-PQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 108 ~e~~~CPICle~~~~-P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
.+-+.|..|...+.. +....=|..||..|..+.+ ..+|..|..+|...+
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-----------~~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-----------AVVCQGCHNAIDPEV 77 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-----------CCBCTTTCSBCCTTS
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-----------CccCcccCCcCCcCc
Confidence 356889999987765 3356778999999976543 268999999987543
No 101
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.79 E-value=22 Score=28.69 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=11.7
Q ss_pred CCCCcccHHHHHHH
Q 009749 127 SCGHIFCFPCILQY 140 (527)
Q Consensus 127 ~CGHiFC~~CI~~~ 140 (527)
.||+.||+.|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 59999999997655
No 102
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=28.24 E-value=43 Score=25.80 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=30.9
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
....|.||.+.-.--.--.|...|+..|+..-+....+ ....||.|...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-----g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPG-----TGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCS-----SSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCC-----CCEECccccCC
Confidence 34579999864221112379999999998654443221 23679999653
No 103
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=27.14 E-value=29 Score=26.52 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=28.1
Q ss_pred ccccccCcCCCCce---EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 009749 111 VQCPICLEYPLCPQ---ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLC 159 (527)
Q Consensus 111 ~~CPICle~~~~P~---it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlC 159 (527)
..|--|+..+.... -..|++.||..|=. |+.. .-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe--------~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHD--------SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTT--------TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHh--------hccCCcCC
Confidence 45888998775443 46899999999943 2221 24689988
No 104
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.81 E-value=97 Score=25.67 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=32.9
Q ss_pred CcccccccCcCCC-----Cce--EcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 009749 109 LSVQCPICLEYPL-----CPQ--ITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMIS 164 (527)
Q Consensus 109 e~~~CPICle~~~-----~P~--it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~ 164 (527)
....|.||-+..- ++. .-.|+--.|.+|..-=... ....||-|.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke--------G~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE--------GTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT--------SCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc--------cCccccccCCccc
Confidence 4568999997632 122 2368888999997654443 2378999988764
No 105
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.79 E-value=27 Score=27.35 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=24.2
Q ss_pred CcccccccCcCCCCceEcCC-CCcccHHHHHHHH
Q 009749 109 LSVQCPICLEYPLCPQITSC-GHIFCFPCILQYL 141 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~C-GHiFC~~CI~~~l 141 (527)
+..-|-||.+..+ -+...| |-.||..|....-
T Consensus 7 e~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 4456999998833 346789 8999999987654
No 106
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=26.78 E-value=33 Score=31.18 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=36.6
Q ss_pred CCCcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 107 NPLSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 107 ~~e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
..+-+.|..|...+.......=|..||..|..+.+ ..+|..|..+|...+
T Consensus 84 H~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-----------~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 84 HSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-----------GTKCAACQLGIPPTQ 133 (182)
T ss_dssp CSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT-----------SCCCTTTCCCCCSSC
T ss_pred ccccCccCCCCCccCCCceeECCEeeecCcccccc-----------ccccccCCCccCCCc
Confidence 34568899999877654445678999999976533 268999998886543
No 107
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.48 E-value=21 Score=27.87 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=32.1
Q ss_pred CcccccccCcCCCCceEc---CCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccC
Q 009749 109 LSVQCPICLEYPLCPQIT---SCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISS 165 (527)
Q Consensus 109 e~~~CPICle~~~~P~it---~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~ 165 (527)
+...|+||...-....++ .|..-|...|+---..... .....||.|...+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~-----~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPE-----EMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCS-----SSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCC-----CCCEEChhccCchhh
Confidence 446799998765433333 6888889999743221110 123689999876644
No 108
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.60 E-value=5.8 Score=31.87 Aligned_cols=14 Identities=43% Similarity=1.108 Sum_probs=11.6
Q ss_pred CCCCcccHHHHHHH
Q 009749 127 SCGHIFCFPCILQY 140 (527)
Q Consensus 127 ~CGHiFC~~CI~~~ 140 (527)
.||+.||+.|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999996554
No 109
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.03 E-value=57 Score=27.58 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=38.1
Q ss_pred CCCcccccccCcCCC---CceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCcccccCCC
Q 009749 107 NPLSVQCPICLEYPL---CPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVMISSKE 167 (527)
Q Consensus 107 ~~e~~~CPICle~~~---~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~i~~~~ 167 (527)
..+-+.|..|...+. .+....=|..||..|..+.+.. ..+|..|..+|...+
T Consensus 26 H~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~---------~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 26 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ---------DGLCASCDKRIRAYE 80 (131)
T ss_dssp ETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC---------CEECTTTCCEECTTS
T ss_pred cHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC---------ccChhhcCCccCccc
Confidence 345688999998874 3456677899999998876531 128999999886543
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.15 E-value=64 Score=28.81 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=30.3
Q ss_pred cccccccCcCCCCceEcCCCCcccHHHHHHHHH--------cCCCCCCCCCcCCCCCCcc
Q 009749 110 SVQCPICLEYPLCPQITSCGHIFCFPCILQYLL--------MGDEDYKGDCFKRCPLCFV 161 (527)
Q Consensus 110 ~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~--------~~~~~~k~~~~~~CPlCr~ 161 (527)
+..|.+|.+-=.---.-.|-.+||..||..-+. ... ....||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~------~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDEN------NQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTST------TCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCC------CCCEeecccC
Confidence 346999986432112247999999999986553 111 2378999964
No 111
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.25 E-value=20 Score=32.91 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=29.2
Q ss_pred CcccccccCcCCCCceEcCCCCcccHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 009749 109 LSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGDEDYKGDCFKRCPLCFVM 162 (527)
Q Consensus 109 e~~~CPICle~~~~P~it~CGHiFC~~CI~~~l~~~~~~~k~~~~~~CPlCr~~ 162 (527)
.+..|.+|...=.--..-.|...|+..|+..-+.... .....||.|+..
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p-----~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFP-----SGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCC-----SSCCCCTTTSCS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCC-----CCCEECccccCc
Confidence 3456999985422111236888888888654333211 123679999764
Done!