BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009751
         (527 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
          Length = 479

 Score = 32.3 bits (72), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 70  DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 120
           D  LS     + D+T SR+   I+  +A +G  K  ++ HSMG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
 pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
          Length = 475

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 70  DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 120
           D  LS     + D+T SR+   I+  +A +G  K  ++ HSMG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
 pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
          Length = 484

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 70  DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 120
           D  LS     + D+T SR+   I+  +A +G  K  ++ HSMG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase
           At 2.8a Resolution
 pdb|3EQ1|B Chain B, The Crystal Structure Of Human Porphobilinogen Deaminase
           At 2.8a Resolution
          Length = 361

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 374 APDMEIYSLYGV--------GLPTERAYVYKLTSAECGIPFQIDTSADDEDSCLKDGVYS 425
           A D +I  L GV            ERA++  L    C +P  + T+  D    L  GV+S
Sbjct: 226 AKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGG-CSVPVAVHTAMKDGQLYLTGGVWS 284

Query: 426 VDGDETV 432
           +DG +++
Sbjct: 285 LDGSDSI 291


>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
 pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
          Length = 475

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 70  DWRLSFQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFM 120
           D  LS     + D+T SR+   I+  +A +G  K  ++ H+MG  + + ++
Sbjct: 96  DKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHAMGTFFLVRYV 146


>pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase
 pdb|3ECR|B Chain B, Structure Of Human Porphobilinogen Deaminase
          Length = 364

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 374 APDMEIYSLYGV--------GLPTERAYVYKLTSAECGIPFQIDTSADDEDSCLKDGVYS 425
           A D +I  L GV            ERA++  L    C +P  + T+  D    L  GV+S
Sbjct: 229 AKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGG-CSVPVAVHTAMKDGQLYLTGGVWS 287

Query: 426 VDGDETV 432
           +DG +++
Sbjct: 288 LDGSDSI 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,130,693
Number of Sequences: 62578
Number of extensions: 750545
Number of successful extensions: 1469
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 12
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)