BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009753
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 118/318 (37%), Gaps = 72/318 (22%)

Query: 58  CQLPTLVYMAREKRPGCPHNFKAGAMNALIRVSSVISNGPVILNLDCDMYANDGDAIREA 117
           C+   +VY  RE+      + KAG M+A +        G +++  D D +    D +   
Sbjct: 209 CRELGVVYSTRERN----EHAKAGNMSAALERL----KGELVVVFDAD-HVPSRDFLART 259

Query: 118 LCFLLDEKREHEIAFVQHPQRF---DNICKNDLYANSYLVVNQVELA----GIGSYDAAL 170
           + + +++    ++  VQ P  F   D I +N    +     N++       G+  +  A 
Sbjct: 260 VGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAF 316

Query: 171 YCGTGCFHRRESLSGAKYPKDYRNINEAKNNDNRSVDELEKASKVLASCSYEKNTHWGKE 230
           +CG+    RR +L  A                                            
Sbjct: 317 FCGSAAVLRRRALDEAG------------------------------------------- 333

Query: 231 MGLVYGCAAEDVVTGLTIQCRGWKSMYFKPNKPAFLGVAPVTLDIALVQMKRWSEGMFQI 290
            G       ED  T L I  RGWKS+Y   ++    G+ P T    + Q  RW+ GM Q+
Sbjct: 334 -GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQM 390

Query: 291 FLSKYCPFIYGHGKIKFGAQMGYCNYLLWAPLSLPTLFYVIVPPLCLGHGISLFPKV--S 348
            L K   F  G G      ++ Y N + +    L  + +++ P + L  GI +F      
Sbjct: 391 LLLKNPLFRRGLG---IAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEE 447

Query: 349 SLWFIP--FAYVFVAQNA 364
            L ++P   A  F+ QNA
Sbjct: 448 VLAYMPGYLAVSFLVQNA 465


>pdb|2Q18|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase
 pdb|2Q19|X Chain X, 2-keto-3-deoxy-d-arabinonate Dehydratase Apo Form
 pdb|2Q1A|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
           Magnesium And 2-Oxobutyrate
 pdb|2Q1C|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
           Calcium And 2- Oxobutyrate
 pdb|2Q1D|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
           Magnesium And 2,5-Dioxopentanoate
 pdb|3BQB|A Chain A, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
 pdb|3BQB|X Chain X, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
 pdb|3BQB|Z Chain Z, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
 pdb|3BQB|Y Chain Y, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
           Dehydratase
          Length = 293

 Score = 29.6 bits (65), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 325 PTLFYVIVPPLCLGHGISLFPKVSSLWFIPFAYVFVAQNA------YSICEALSC 373
           P +F+   P  C+GHG ++  +  S W +P   + V  ++      Y+I + +S 
Sbjct: 113 PEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSA 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,333,410
Number of Sequences: 62578
Number of extensions: 562131
Number of successful extensions: 1752
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1750
Number of HSP's gapped (non-prelim): 6
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)