BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009754
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
           Mutant) From Helicobacter Pylori Complexed With L-Lysine
          Length = 425

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 37  CDKIEEIIRHVGEEAKENRIAFS-------------KLKVLILDYLPTLTSFCLENYTLE 83
           C  I EI R +    K  RI FS             KL +L L+    +    +E     
Sbjct: 86  CVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQS 145

Query: 84  FPSLERVSMTHCPNMKTFSHGILSTP-KLHKVQVTEKEEGELHHW 127
                R+S+   PN+   +H  LST  K +K  V EKE  E+  W
Sbjct: 146 LGIKARISIRINPNIDAKTHPYLSTGLKENKFGVGEKEALEMFLW 190


>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
 pdb|3H5D|B Chain B, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
 pdb|3H5D|C Chain C, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
 pdb|3H5D|D Chain D, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
          Length = 311

 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 153 QLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCD 212
           Q   + H K I     LP+  +N   R+VV+         P  +LR  ++   + V+ C 
Sbjct: 119 QEGMYQHFKAIADASDLPIIIYNIPGRVVVE-------LTPETMLRLADHPNIIGVKECT 171

Query: 213 SIEEVLHLEEQ 223
           S+  + +L E 
Sbjct: 172 SLANMAYLIEH 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,531,668
Number of Sequences: 62578
Number of extensions: 634471
Number of successful extensions: 1413
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1413
Number of HSP's gapped (non-prelim): 5
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)