Query 009754
Match_columns 526
No_of_seqs 202 out of 2364
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 16:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.3E-26 2.9E-31 261.2 20.5 433 3-493 117-585 (968)
2 PLN00113 leucine-rich repeat r 99.9 3E-26 6.4E-31 258.5 21.0 437 3-493 92-561 (968)
3 PLN03210 Resistant to P. syrin 99.9 4.6E-23 1E-27 233.2 20.3 332 83-486 556-900 (1153)
4 PLN03210 Resistant to P. syrin 99.9 8E-22 1.7E-26 223.2 22.7 317 85-472 589-910 (1153)
5 KOG4194 Membrane glycoprotein 99.8 8.3E-21 1.8E-25 185.4 4.9 383 60-512 79-470 (873)
6 KOG0444 Cytoskeletal regulator 99.8 4.2E-21 9.1E-26 188.7 -7.3 83 22-117 27-111 (1255)
7 KOG4194 Membrane glycoprotein 99.8 6.5E-19 1.4E-23 172.3 5.8 362 84-513 77-448 (873)
8 KOG0472 Leucine-rich repeat pr 99.7 5.8E-21 1.3E-25 178.7 -14.4 433 4-492 68-541 (565)
9 KOG0444 Cytoskeletal regulator 99.7 2.5E-19 5.3E-24 176.4 -6.8 352 84-492 6-375 (1255)
10 KOG0472 Leucine-rich repeat pr 99.6 2E-18 4.3E-23 161.9 -8.8 378 6-467 116-540 (565)
11 KOG0618 Serine/threonine phosp 99.6 1.7E-17 3.7E-22 170.7 -3.1 131 344-491 356-488 (1081)
12 KOG0618 Serine/threonine phosp 99.6 3.6E-17 7.8E-22 168.4 -5.3 390 29-515 47-487 (1081)
13 PRK15387 E3 ubiquitin-protein 99.4 3.1E-12 6.8E-17 135.8 15.5 70 27-117 201-270 (788)
14 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4E-17 137.5 13.7 257 147-493 201-459 (788)
15 KOG4341 F-box protein containi 99.4 4.6E-15 9.9E-20 140.4 -6.1 295 147-470 138-441 (483)
16 KOG4341 F-box protein containi 99.4 1.6E-14 3.5E-19 136.8 -5.1 282 175-487 138-434 (483)
17 KOG4658 Apoptotic ATPase [Sign 99.2 3.5E-11 7.6E-16 130.6 7.7 161 20-210 516-677 (889)
18 PRK15370 E3 ubiquitin-protein 99.2 6.9E-11 1.5E-15 126.4 9.6 101 147-279 178-278 (754)
19 PRK15370 E3 ubiquitin-protein 99.2 8.4E-11 1.8E-15 125.7 10.0 72 27-117 178-249 (754)
20 KOG4658 Apoptotic ATPase [Sign 98.9 6.8E-10 1.5E-14 120.7 4.3 216 23-279 567-787 (889)
21 KOG0617 Ras suppressor protein 98.8 1.1E-10 2.4E-15 97.8 -5.4 86 19-117 25-110 (264)
22 KOG0617 Ras suppressor protein 98.8 2.1E-10 4.6E-15 96.2 -4.3 159 84-280 32-190 (264)
23 cd00116 LRR_RI Leucine-rich re 98.7 2E-09 4.4E-14 105.9 -1.8 73 137-212 71-148 (319)
24 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-09 3.6E-14 106.5 -3.1 37 174-211 22-61 (319)
25 KOG3207 Beta-tubulin folding c 98.6 6.6E-09 1.4E-13 99.8 0.9 214 25-271 119-335 (505)
26 KOG2120 SCF ubiquitin ligase, 98.5 2E-09 4.4E-14 98.2 -5.3 122 143-276 206-327 (419)
27 KOG3207 Beta-tubulin folding c 98.5 1.4E-08 3.1E-13 97.5 -0.2 187 172-407 118-311 (505)
28 KOG4237 Extracellular matrix p 98.4 2.4E-08 5.2E-13 94.7 -2.0 262 175-499 67-367 (498)
29 PRK15386 type III secretion pr 98.3 4.9E-06 1.1E-10 81.9 9.8 58 174-249 51-108 (426)
30 KOG2120 SCF ubiquitin ligase, 98.2 1E-08 2.2E-13 93.7 -8.2 41 368-409 310-350 (419)
31 PF14580 LRR_9: Leucine-rich r 98.2 9.2E-07 2E-11 77.4 3.5 110 145-272 40-150 (175)
32 PRK15386 type III secretion pr 98.2 5.3E-06 1.1E-10 81.6 9.1 133 318-486 51-184 (426)
33 KOG4237 Extracellular matrix p 98.2 3E-08 6.4E-13 94.1 -6.9 81 27-117 67-148 (498)
34 KOG1947 Leucine rich repeat pr 98.2 1.4E-07 3E-12 98.4 -3.2 121 83-214 186-308 (482)
35 KOG1947 Leucine rich repeat pr 98.0 1.1E-07 2.4E-12 99.2 -7.3 39 431-469 403-441 (482)
36 KOG1259 Nischarin, modulator o 98.0 1.5E-06 3.3E-11 79.8 0.3 116 134-272 294-409 (490)
37 PF14580 LRR_9: Leucine-rich r 97.8 1E-05 2.2E-10 70.9 3.0 108 145-273 17-124 (175)
38 COG4886 Leucine-rich repeat (L 97.6 4.4E-05 9.5E-10 77.5 3.7 147 86-272 141-287 (394)
39 PF13855 LRR_8: Leucine rich r 97.6 0.0002 4.4E-09 51.0 5.6 57 348-407 2-59 (61)
40 COG4886 Leucine-rich repeat (L 97.5 5.4E-05 1.2E-09 76.9 3.3 193 9-249 98-291 (394)
41 KOG3665 ZYG-1-like serine/thre 97.5 2.5E-05 5.4E-10 83.4 0.7 160 26-208 121-282 (699)
42 PF13855 LRR_8: Leucine rich r 97.4 0.00048 1.1E-08 49.0 5.6 58 429-489 1-59 (61)
43 KOG0532 Leucine-rich repeat (L 97.3 1.7E-05 3.7E-10 79.3 -3.7 155 20-211 114-270 (722)
44 KOG1259 Nischarin, modulator o 97.3 0.00011 2.3E-09 68.0 1.6 128 145-298 282-416 (490)
45 KOG3665 ZYG-1-like serine/thre 97.3 9.7E-05 2.1E-09 79.0 1.3 108 147-271 122-229 (699)
46 KOG0532 Leucine-rich repeat (L 97.1 2.3E-05 5E-10 78.4 -4.6 153 22-212 93-245 (722)
47 KOG1909 Ran GTPase-activating 97.0 5.5E-05 1.2E-09 71.3 -2.8 43 197-246 88-131 (382)
48 KOG1859 Leucine-rich repeat pr 96.7 3.5E-05 7.6E-10 79.2 -7.1 126 87-247 166-291 (1096)
49 PF12799 LRR_4: Leucine Rich r 96.6 0.0024 5.2E-08 41.8 3.3 40 175-218 1-40 (44)
50 PLN03150 hypothetical protein; 96.6 0.0038 8.2E-08 67.0 6.5 101 137-252 432-532 (623)
51 KOG1909 Ran GTPase-activating 96.5 0.00051 1.1E-08 65.0 -0.5 250 4-272 30-308 (382)
52 KOG2982 Uncharacterized conser 96.5 0.0017 3.8E-08 60.2 2.7 20 426-445 246-265 (418)
53 PLN03150 hypothetical protein; 96.2 0.0082 1.8E-07 64.4 6.1 62 344-407 439-500 (623)
54 PF12799 LRR_4: Leucine Rich r 96.1 0.0083 1.8E-07 39.3 3.5 39 4-44 1-40 (44)
55 KOG2982 Uncharacterized conser 95.8 0.0024 5.1E-08 59.3 -0.2 85 319-407 71-156 (418)
56 KOG1644 U2-associated snRNP A' 95.8 0.021 4.6E-07 50.3 5.5 88 173-272 62-150 (233)
57 KOG2123 Uncharacterized conser 95.7 0.00031 6.7E-09 64.4 -5.9 106 319-436 19-124 (388)
58 KOG1859 Leucine-rich repeat pr 95.3 0.0011 2.4E-08 68.7 -4.3 104 230-358 182-290 (1096)
59 KOG2739 Leucine-rich acidic nu 95.3 0.0053 1.2E-07 56.1 0.5 89 173-273 63-154 (260)
60 KOG2123 Uncharacterized conser 95.3 0.00061 1.3E-08 62.5 -5.8 83 174-274 18-100 (388)
61 KOG3864 Uncharacterized conser 95.2 0.0016 3.4E-08 57.1 -3.2 45 368-412 122-166 (221)
62 KOG0531 Protein phosphatase 1, 94.9 0.0044 9.4E-08 63.3 -1.7 168 58-271 94-264 (414)
63 KOG3864 Uncharacterized conser 94.3 0.0047 1E-07 54.3 -2.6 47 232-279 122-168 (221)
64 KOG2739 Leucine-rich acidic nu 94.1 0.024 5.2E-07 51.9 1.5 86 172-273 40-127 (260)
65 PF00560 LRR_1: Leucine Rich R 92.9 0.081 1.7E-06 28.7 1.7 21 28-49 1-21 (22)
66 PF13504 LRR_7: Leucine rich r 92.3 0.09 2E-06 26.5 1.3 17 27-44 1-17 (17)
67 KOG1644 U2-associated snRNP A' 92.3 0.28 6.2E-06 43.4 5.2 87 20-117 57-148 (233)
68 KOG0531 Protein phosphatase 1, 92.2 0.042 9E-07 56.1 0.1 107 141-271 89-195 (414)
69 PF13306 LRR_5: Leucine rich r 87.5 4.9 0.00011 32.9 8.9 13 197-209 8-20 (129)
70 KOG4579 Leucine-rich repeat (L 87.4 0.068 1.5E-06 44.2 -2.3 60 174-246 52-111 (177)
71 PF13306 LRR_5: Leucine rich r 84.8 5.6 0.00012 32.5 8.0 78 318-405 11-89 (129)
72 smart00367 LRR_CC Leucine-rich 84.1 0.58 1.2E-05 26.5 1.1 17 454-470 1-17 (26)
73 KOG4579 Leucine-rich repeat (L 83.7 0.077 1.7E-06 43.8 -3.7 58 85-158 53-111 (177)
74 COG5238 RNA1 Ran GTPase-activa 82.0 0.29 6.2E-06 45.4 -1.1 60 347-407 185-252 (388)
75 smart00370 LRR Leucine-rich re 75.0 1.7 3.7E-05 24.4 1.1 21 26-47 1-21 (26)
76 smart00369 LRR_TYP Leucine-ric 75.0 1.7 3.7E-05 24.4 1.1 21 26-47 1-21 (26)
77 COG5238 RNA1 Ran GTPase-activa 51.5 5.1 0.00011 37.5 0.1 62 344-407 211-282 (388)
78 PF13516 LRR_6: Leucine Rich r 42.5 17 0.00037 19.7 1.3 13 200-212 1-13 (24)
79 smart00365 LRR_SD22 Leucine-ri 34.0 36 0.00077 19.3 1.7 18 26-44 1-18 (26)
80 smart00364 LRR_BAC Leucine-ric 32.6 24 0.00052 20.0 0.8 18 27-45 2-19 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.3e-26 Score=261.22 Aligned_cols=433 Identities=17% Similarity=0.117 Sum_probs=225.7
Q ss_pred ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754 3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (526)
+++|++|+++.+...- ..+.+.+++|++|++++|.....+|..+++ +++|++|+++++......+.. ..
T Consensus 117 l~~L~~L~Ls~n~l~~-~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~--~~ 185 (968)
T PLN00113 117 SSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNMLSGEIPNDIGS--------FSSLKVLDLGGNVLVGKIPNS--LT 185 (968)
T ss_pred CCCCCEEECcCCcccc-ccCccccCCCCEEECcCCcccccCChHHhc--------CCCCCEEECccCcccccCChh--hh
Confidence 4678888888665443 334566888888888887433456766666 778888888876433333222 34
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|++|++++|.....+|..+..+++|+.|++++ +.....++..+..+++|++|+++++.-...
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~--------------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY--------------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC--------------CccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 678888888888865556677777778888888873 222234455556667777777766542212
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
.+... ..+++|++|++++|.....+ |.. +..+++|++|++++|.....+|. ....+++|+.|++
T Consensus 252 ~p~~l----~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~l 315 (968)
T PLN00113 252 IPSSL----GNLKNLQYLFLYQNKLSGPI-PPS-IFSLQKLISLDLSDNSLSGEIPE----------LVIQLQNLEILHL 315 (968)
T ss_pred cChhH----hCCCCCCEEECcCCeeeccC-chh-HhhccCcCEEECcCCeeccCCCh----------hHcCCCCCcEEEC
Confidence 22222 34566666666666332222 222 55666666666666643333332 2334555555555
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCcc-cc-----CcccceeeecCCCCccccc--------hhhhhh-ccc
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMET-FI-----SNSVVHVTTDNKEPQKLTS--------EENFLL-AHQ 307 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~-----~~~L~~L~i~~~~~~~~~~--------~~~~~~-~~~ 307 (526)
+++......+.. +..+++|+.|++++|. +.. .+ ...++.++++++...+... +..+.. ...
T Consensus 316 ~~n~~~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 316 FSNNFTGKIPVA---LTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred CCCccCCcCChh---HhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 554322222221 3345555555555532 221 11 1234444444443321100 000000 000
Q ss_pred cc-cccccCCCCCCccEEEecCCCCceEecccC--------------------ChhhhhhcccceeEeccCcCccccCCC
Q 009754 308 VQ-PLFDEKVSFPRLRWLELSGLHKVQHLWKEN--------------------DESNKAFANLESLEISECSKLQKLVPP 366 (526)
Q Consensus 308 ~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~--------------------~~~~~~l~~L~~L~l~~c~~l~~l~~~ 366 (526)
+. ..+.....+++|+.|++.++.-...++... ......+++|+.|++++|.....+|..
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 00 001112334555555555543222222111 000023444445555444433333322
Q ss_pred CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceec
Q 009754 367 SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFC 446 (526)
Q Consensus 367 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 446 (526)
+ ..++|+.|++++|.-....|. ...++++|+.|++++|.-...++. ....+++|+.|++++|.-...+|
T Consensus 472 ~-~~~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 472 F-GSKRLENLDLSRNQFSGAVPR--KLGSLSELMQLKLSENKLSGEIPD--------ELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred c-ccccceEEECcCCccCCccCh--hhhhhhccCEEECcCCcceeeCCh--------HHcCccCCCEEECCCCcccccCC
Confidence 2 234555555555432222222 234556666666666532222221 12346778888888875444555
Q ss_pred CCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754 447 LGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 493 (526)
Q Consensus 447 ~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~ 493 (526)
..... +++|++|++++|.....+|..+..+++|+.+++++|++.+
T Consensus 541 ~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 541 ASFSE--MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred hhHhC--cccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 54443 7888888888877666788777677888888887766654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=3e-26 Score=258.47 Aligned_cols=437 Identities=15% Similarity=0.087 Sum_probs=281.3
Q ss_pred ccceeEEeeccCceeeccc-c-cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCc
Q 009754 3 FLLFYFFNIHTHAHTFAYF-Q-VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY 80 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~-~-~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (526)
+++|++|+++.......++ . +..+++|++|++++++....+|.. .+++|++|+++++......+..
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----------~l~~L~~L~Ls~n~~~~~~p~~-- 159 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----------SIPNLETLDLSNNMLSGEIPND-- 159 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc----------ccCCCCEEECcCCcccccCChH--
Confidence 6899999999876543333 3 448999999999997544455542 2789999999986543333322
Q ss_pred eecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCC
Q 009754 81 TLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL 160 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 160 (526)
...+++|+.|++++|.....+|..+..+++|++|++++ +.....++..+..+++|+.|+++++.-.
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~--------------n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS--------------NQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC--------------CCCcCcCChHHcCcCCccEEECcCCccC
Confidence 45799999999999976667888888999999999983 3333456777888999999999988633
Q ss_pred ceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceE
Q 009754 161 KEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGL 240 (526)
Q Consensus 161 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L 240 (526)
..++... ..+++|++|++++|.....+ |.. ++.+++|++|++++|.....+|. ....+++|+.|
T Consensus 226 ~~~p~~l----~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~L~~n~l~~~~p~----------~l~~l~~L~~L 289 (968)
T PLN00113 226 GEIPYEI----GGLTSLNHLDLVYNNLTGPI-PSS-LGNLKNLQYLFLYQNKLSGPIPP----------SIFSLQKLISL 289 (968)
T ss_pred CcCChhH----hcCCCCCEEECcCceecccc-Chh-HhCCCCCCEEECcCCeeeccCch----------hHhhccCcCEE
Confidence 2333333 56899999999998544333 433 89999999999999865444543 45678999999
Q ss_pred ecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCCCCcc-ccc-hhhh------hhc-
Q 009754 241 RLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKEPQK-LTS-EENF------LLA- 305 (526)
Q Consensus 241 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~-~~~-~~~~------~~~- 305 (526)
+++++.....++.. +..+++|+.|++++| .+.... ...|+.++++++...+ ++. ...+ ...
T Consensus 290 ~Ls~n~l~~~~p~~---~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 290 DLSDNSLSGEIPEL---VIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred ECcCCeeccCCChh---HcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 99987544444443 568999999999986 344322 3578899998887653 221 0000 000
Q ss_pred cccc-cccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCc
Q 009754 306 HQVQ-PLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGL 384 (526)
Q Consensus 306 ~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 384 (526)
..+. ..+.....+++|+.|++.++.-...++... ..+++|+.|++.+|+....+|..+..+++|+.|+++++. +
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~----~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l 440 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL----GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-L 440 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH----hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-c
Confidence 0000 011122234455555555432222222211 556777777777776544566666677777777777653 3
Q ss_pred cccccchhhhhccCCceEEEecccCcceeec------------cCC---cccccccccccccceeecccccccceecCCC
Q 009754 385 INLLTFSTSESLVNLGRMMIADCKMIEQIIQ------------LQV---GEEAKDCNVFKELRYLELYCLPSLTSFCLGN 449 (526)
Q Consensus 385 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~------------~~~---~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 449 (526)
...... ....+++|+.|++++|.-...++. ... +........+++|+.|++++|.-...+|...
T Consensus 441 ~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 441 QGRINS-RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred cCccCh-hhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence 332221 224566777777766642221111 000 0001112345677777777774444555554
Q ss_pred ccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754 450 YALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 493 (526)
Q Consensus 450 ~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~ 493 (526)
.. +++|++|++++|.-...+|..+..+++|+.|++++|++.+
T Consensus 520 ~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 520 SS--CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cC--ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 44 7888888888876666777777678888888887776654
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.6e-23 Score=233.18 Aligned_cols=332 Identities=19% Similarity=0.258 Sum_probs=186.8
Q ss_pred cCCCccEEEecCCC--C---c-cccccCcccCC-CeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEee
Q 009754 83 EFPSLERVSMTHCP--N---M-KTFSHGILSTP-KLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLS 155 (526)
Q Consensus 83 ~~~~L~~L~l~~c~--~---l-~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 155 (526)
.+++|+.|.+.... . . ..+|.++..++ +|+.|.+. ...+..+|..+ .+.+|+.|+++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~---------------~~~l~~lP~~f-~~~~L~~L~L~ 619 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD---------------KYPLRCMPSNF-RPENLVKLQMQ 619 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEec---------------CCCCCCCCCcC-CccCCcEEECc
Confidence 46666666664321 0 0 12344444433 46666665 22334444444 45777777777
Q ss_pred cCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCC
Q 009754 156 YFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP 235 (526)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~ 235 (526)
++. ++.+|.+. ..+++|+.|++++|..++.++. +..+++|+.|++++|..+..+|. .+..++
T Consensus 620 ~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~----------si~~L~ 681 (1153)
T PLN03210 620 GSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPS----------SIQYLN 681 (1153)
T ss_pred Ccc-cccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccch----------hhhccC
Confidence 764 66666665 5677788888877766666532 66777888888887777777665 455677
Q ss_pred ccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccccccccc
Q 009754 236 KLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD 313 (526)
Q Consensus 236 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (526)
+|+.|++++|..++.+|.. ..+++|+.|++++|..+..++ +.+++.|+++++.+..++...
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~------------- 744 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL------------- 744 (1153)
T ss_pred CCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-------------
Confidence 7888888877777776542 257778888888877666655 456777777776655443211
Q ss_pred cCCCCCCccEEEecCCCCceEecccCC--h--hhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccccc
Q 009754 314 EKVSFPRLRWLELSGLHKVQHLWKEND--E--SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT 389 (526)
Q Consensus 314 ~~~~~~~L~~L~l~~~~~l~~l~~~~~--~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 389 (526)
.+++|++|.+.++... .++.... + ....+++|+.|++++|+.+..+|..+..+++|+.|++++|+.++.+|.
T Consensus 745 ---~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 745 ---RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ---cccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 2345555555443210 0100000 0 002235666666666666666666666666666666666666666554
Q ss_pred chhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCce
Q 009754 390 FSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMK 469 (526)
Q Consensus 390 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 469 (526)
. .++++|+.|++++|..++.++. ..++|+.|++.+. .++.+|..... +++|++|++.+|++++
T Consensus 821 ~---~~L~sL~~L~Ls~c~~L~~~p~-----------~~~nL~~L~Ls~n-~i~~iP~si~~--l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 821 G---INLESLESLDLSGCSRLRTFPD-----------ISTNISDLNLSRT-GIEEVPWWIEK--FSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred C---CCccccCEEECCCCCccccccc-----------cccccCEeECCCC-CCccChHHHhc--CCCCCEEECCCCCCcC
Confidence 2 1456666666666655544432 1244555555443 34444444333 5555555555555555
Q ss_pred eccCCCCCCCCcceEEe
Q 009754 470 IFSQGVLDTPMLNKVNV 486 (526)
Q Consensus 470 ~lp~~~~~~~~L~~l~l 486 (526)
.+|.....+++|+.+++
T Consensus 884 ~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 884 RVSLNISKLKHLETVDF 900 (1153)
T ss_pred ccCcccccccCCCeeec
Confidence 55544444455555555
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8e-22 Score=223.15 Aligned_cols=317 Identities=24% Similarity=0.347 Sum_probs=225.7
Q ss_pred CCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec
Q 009754 85 PSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW 164 (526)
Q Consensus 85 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 164 (526)
++|+.|.+.+++ ++.+|..+ ...+|+.|++. .+.+..++.....+++|+.|+++++..++.++
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~---------------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQ---------------GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred cccEEEEecCCC-CCCCCCcC-CccCCcEEECc---------------CccccccccccccCCCCCEEECCCCCCcCcCC
Confidence 468888888774 67777655 46788888887 34456666666778888888888876665543
Q ss_pred cCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCC
Q 009754 165 HGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLID 244 (526)
Q Consensus 165 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 244 (526)
. . ..+++|++|++.+|..+..++.. ++++++|+.|++++|..++.+|. . ..+++|+.|.+++
T Consensus 652 ~-l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~----------~-i~l~sL~~L~Lsg 713 (1153)
T PLN03210 652 D-L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPT----------G-INLKSLYRLNLSG 713 (1153)
T ss_pred c-c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCC----------c-CCCCCCCEEeCCC
Confidence 2 1 35788888999888887776433 78888899999988888887764 2 2578888888888
Q ss_pred CccccccccCCCccccCCCcceEeeecCCCCcccc----CcccceeeecCCCCccccchhhhhhccccccc-cccCCCCC
Q 009754 245 LPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI----SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPL-FDEKVSFP 319 (526)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 319 (526)
|..+..++. ..++|+.|++.++ .++.+| ..++..|.+.++....+.. ...+. ......++
T Consensus 714 c~~L~~~p~------~~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~--------~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 714 CSRLKSFPD------ISTNISWLDLDET-AIEEFPSNLRLENLDELILCEMKSEKLWE--------RVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCcccccc------ccCCcCeeecCCC-ccccccccccccccccccccccchhhccc--------cccccchhhhhccc
Confidence 877776643 2457888888874 455554 2345555554432111110 00000 00112347
Q ss_pred CccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCC
Q 009754 320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNL 399 (526)
Q Consensus 320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 399 (526)
+|+.|+++++..+..+|... +.+++|+.|++.+|+.++.+|... .+++|++|++++|..+..+|. ..++|
T Consensus 779 sL~~L~Ls~n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL 848 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSI----QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNI 848 (1153)
T ss_pred cchheeCCCCCCccccChhh----hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----ccccc
Confidence 89999999988777777665 788999999999999898888766 688999999999988877654 23678
Q ss_pred ceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceecc
Q 009754 400 GRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS 472 (526)
Q Consensus 400 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp 472 (526)
+.|++++. .++.++. ....+++|+.|++.+|++++.++..... ++.|+.+++.+|++++.++
T Consensus 849 ~~L~Ls~n-~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~~~~--L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 849 SDLNLSRT-GIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLNISK--LKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CEeECCCC-CCccChH--------HHhcCCCCCEEECCCCCCcCccCccccc--ccCCCeeecCCCccccccc
Confidence 89998774 5665543 1245789999999999999988887655 8899999999999887654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=8.3e-21 Score=185.38 Aligned_cols=383 Identities=18% Similarity=0.201 Sum_probs=213.1
Q ss_pred ccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHh
Q 009754 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC 139 (526)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 139 (526)
.-+.|++++ ..+.++.... ...+|+|+++++.++ .++.+|+......+|+.|.+. ++.|..+
T Consensus 79 ~t~~Ldlsn-Nkl~~id~~~-f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~---------------~N~I~sv 140 (873)
T KOG4194|consen 79 QTQTLDLSN-NKLSHIDFEF-FYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLR---------------HNLISSV 140 (873)
T ss_pred ceeeeeccc-cccccCcHHH-HhcCCcceeeeeccc-hhhhcccccccccceeEEeee---------------ccccccc
Confidence 344566664 3455544432 234666666666665 466666666656666666665 3444444
Q ss_pred h-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhc
Q 009754 140 Y-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVL 218 (526)
Q Consensus 140 ~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 218 (526)
. +++..++.|+.||++.+. +..+.... +| .-.++++|+++++ .++++ ..+.+..+.+|..|.+++| .++.+|
T Consensus 141 ~se~L~~l~alrslDLSrN~-is~i~~~s-fp--~~~ni~~L~La~N-~It~l-~~~~F~~lnsL~tlkLsrN-rittLp 213 (873)
T KOG4194|consen 141 TSEELSALPALRSLDLSRNL-ISEIPKPS-FP--AKVNIKKLNLASN-RITTL-ETGHFDSLNSLLTLKLSRN-RITTLP 213 (873)
T ss_pred cHHHHHhHhhhhhhhhhhch-hhcccCCC-CC--CCCCceEEeeccc-ccccc-ccccccccchheeeecccC-cccccC
Confidence 3 334445555555555433 22222221 11 1234555555554 23332 2222444555555555554 344444
Q ss_pred cccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCCC
Q 009754 219 HLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKE 292 (526)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~ 292 (526)
.. .+..+++|+.|++... .++ +..+.. +..+++|+.|.+.. +++..+. ...++++.+..+.
T Consensus 214 ~r---------~Fk~L~~L~~LdLnrN-~ir-ive~lt-FqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 214 QR---------SFKRLPKLESLDLNRN-RIR-IVEGLT-FQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred HH---------Hhhhcchhhhhhcccc-cee-eehhhh-hcCchhhhhhhhhh-cCcccccCcceeeecccceeecccch
Confidence 21 2233455555554332 111 111111 44455555555544 2222211 2333344433333
Q ss_pred CccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCC
Q 009754 293 PQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLE 371 (526)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~ 371 (526)
...+.. ...-+++.|+.|+++. +.++.+....+ ..+++|+.|+++.+ .++.+++ .+..+.
T Consensus 281 l~~vn~--------------g~lfgLt~L~~L~lS~-NaI~rih~d~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 281 LQAVNE--------------GWLFGLTSLEQLDLSY-NAIQRIHIDSW---SFTQKLKELDLSSN-RITRLDEGSFRVLS 341 (873)
T ss_pred hhhhhc--------------ccccccchhhhhccch-hhhheeecchh---hhcccceeEecccc-ccccCChhHHHHHH
Confidence 222111 1122568889999987 35666666554 67789999999875 5776654 456778
Q ss_pred CCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCcc
Q 009754 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYA 451 (526)
Q Consensus 372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 451 (526)
.|+.|.++. +.+..+...+ +..+.+|++|++... .+.-.+. ++......+++|+.|++.+. +++.++.....
T Consensus 342 ~Le~LnLs~-Nsi~~l~e~a-f~~lssL~~LdLr~N-~ls~~IE----Daa~~f~gl~~LrkL~l~gN-qlk~I~krAfs 413 (873)
T KOG4194|consen 342 QLEELNLSH-NSIDHLAEGA-FVGLSSLHKLDLRSN-ELSWCIE----DAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS 413 (873)
T ss_pred Hhhhhcccc-cchHHHHhhH-HHHhhhhhhhcCcCC-eEEEEEe----cchhhhccchhhhheeecCc-eeeecchhhhc
Confidence 899999998 5677775543 367789999998764 2322222 12222344899999999995 78999887655
Q ss_pred CCCCCccEEEEcCCCCceeccCCCCCCCCcceEEe-eccCCCCCcccccCChHHHHHHHHHh
Q 009754 452 LEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNV-TEEEKDDDEGCWEGNLNDTIKKLFNE 512 (526)
Q Consensus 452 ~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l-~~~~~~~~~~~~~~~~~~~l~~l~~~ 512 (526)
.+++|++|++.+..-.+.-|+.+..+ .|++|.+ +-+.+=+....|- ..|+.+.+.+
T Consensus 414 -gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl---~qWl~~~~lq 470 (873)
T KOG4194|consen 414 -GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWL---AQWLYRRKLQ 470 (873)
T ss_pred -cCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHH---HHHHHhcccc
Confidence 69999999998866556666777555 8999988 3333335555565 3555555443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=4.2e-21 Score=188.70 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=39.8
Q ss_pred ccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc--
Q 009754 22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK-- 99 (526)
Q Consensus 22 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~-- 99 (526)
...++++++.|.|.. .++..+|.+.+. +.+|++|.+...+ |....-. ...+|.|+.+.++++ +++
T Consensus 27 ~v~qMt~~~WLkLnr-t~L~~vPeEL~~--------lqkLEHLs~~HN~-L~~vhGE--Ls~Lp~LRsv~~R~N-~LKns 93 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNR-TKLEQVPEELSR--------LQKLEHLSMAHNQ-LISVHGE--LSDLPRLRSVIVRDN-NLKNS 93 (1255)
T ss_pred hHHHhhheeEEEech-hhhhhChHHHHH--------Hhhhhhhhhhhhh-hHhhhhh--hccchhhHHHhhhcc-ccccC
Confidence 444566666666665 356666665544 5555555555422 2222111 223555555555544 222
Q ss_pred ccccCcccCCCeeeEEec
Q 009754 100 TFSHGILSTPKLHKVQVT 117 (526)
Q Consensus 100 ~l~~~~~~~~~L~~L~l~ 117 (526)
.+|..+..+..|..|+++
T Consensus 94 GiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred CCCchhcccccceeeecc
Confidence 244444444444444444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=6.5e-19 Score=172.28 Aligned_cols=362 Identities=14% Similarity=0.149 Sum_probs=244.5
Q ss_pred CCCccEEEecCCCCcccc-ccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 84 FPSLERVSMTHCPNMKTF-SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 84 ~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+.-+.|+++++. +.+. +.++..+++|+.+++. .+....+|.-.....+|+.|++.++. +..
T Consensus 77 p~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~---------------~N~Lt~IP~f~~~sghl~~L~L~~N~-I~s 139 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLN---------------KNELTRIPRFGHESGHLEKLDLRHNL-ISS 139 (873)
T ss_pred ccceeeeeccccc-cccCcHHHHhcCCcceeeeec---------------cchhhhcccccccccceeEEeeeccc-ccc
Confidence 4566789999884 5543 3455679999999998 56667777666667789999999875 332
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
+.... ...++.|++|+++.+ .++.++... +..=+++++|++++| .++.+.. | .+..+.+|..|.+
T Consensus 140 v~se~---L~~l~alrslDLSrN-~is~i~~~s-fp~~~ni~~L~La~N-~It~l~~--~-------~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 140 VTSEE---LSALPALRSLDLSRN-LISEIPKPS-FPAKVNIKKLNLASN-RITTLET--G-------HFDSLNSLLTLKL 204 (873)
T ss_pred ccHHH---HHhHhhhhhhhhhhc-hhhcccCCC-CCCCCCceEEeeccc-ccccccc--c-------cccccchheeeec
Confidence 21111 135789999999988 455553222 555578999999998 5666531 1 4556778999999
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCccc------cCcccceeeecCCCCccccchhhhhhccccccccccCC
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF------ISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKV 316 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~------~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (526)
+.. .++.+|.. .+.++|.|+.|++.. +.++.. ...+++.+.+..+++..+.... ..
T Consensus 205 srN-rittLp~r--~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~--------------Fy 266 (873)
T KOG4194|consen 205 SRN-RITTLPQR--SFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--------------FY 266 (873)
T ss_pred ccC-cccccCHH--Hhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccccCcc--------------ee
Confidence 985 56766533 266799999999987 455433 2556676666666654433211 12
Q ss_pred CCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCCEEeeccccCccccccchhhhh
Q 009754 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSES 395 (526)
Q Consensus 317 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (526)
.+..+++|++.. +.++.+....+ -.++.|+.|+++.+. +..+ +..|...++|+.|+++. +.++.+++.++ ..
T Consensus 267 ~l~kme~l~L~~-N~l~~vn~g~l---fgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf-~~ 339 (873)
T KOG4194|consen 267 GLEKMEHLNLET-NRLQAVNEGWL---FGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF-RV 339 (873)
T ss_pred eecccceeeccc-chhhhhhcccc---cccchhhhhccchhh-hheeecchhhhcccceeEeccc-cccccCChhHH-HH
Confidence 457888999876 45666655544 567899999998763 4444 46677789999999998 68888888654 67
Q ss_pred ccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCcc-CCCCCccEEEEcCCCCceeccC-
Q 009754 396 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYA-LEFPSLKQVVVRQCPKMKIFSQ- 473 (526)
Q Consensus 396 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~~~~L~~L~l~~C~~l~~lp~- 473 (526)
+..|++|.+++. .+..+.. | ....+.+|++|++.+..--..+.....+ -++++|++|.+.+ ++++.+|.
T Consensus 340 L~~Le~LnLs~N-si~~l~e---~----af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr 410 (873)
T KOG4194|consen 340 LSQLEELNLSHN-SIDHLAE---G----AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR 410 (873)
T ss_pred HHHhhhhccccc-chHHHHh---h----HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchh
Confidence 889999999885 4555433 1 1134688999999886322222111111 1589999999988 79999884
Q ss_pred CCCCCCCcceEEeeccCCCCCcccccCChHHHHHHHHHhh
Q 009754 474 GVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEM 513 (526)
Q Consensus 474 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 513 (526)
.+..+++|+.|++..|.+..-...--. ...++++.++.
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe--~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFE--PMELKELVMNS 448 (873)
T ss_pred hhccCcccceecCCCCcceeecccccc--cchhhhhhhcc
Confidence 355689999999977776432222221 33667766554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=5.8e-21 Score=178.72 Aligned_cols=433 Identities=16% Similarity=0.148 Sum_probs=224.3
Q ss_pred cceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceec
Q 009754 4 LLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE 83 (526)
Q Consensus 4 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (526)
..+-+++.+.-.....+++++.+..+..|+.++ +++..+|+.++. ..+++.|+.++. .+...+.. ++.
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s--------~~~l~~l~~s~n-~~~el~~~--i~~ 135 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGS--------LISLVKLDCSSN-ELKELPDS--IGR 135 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhh--------hhhhhhhhcccc-ceeecCch--HHH
Confidence 345667777666666677777777777777777 467777777766 556666665542 23333333 345
Q ss_pred CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccce----eee----ccccchhhHHhhhhhcCCCCCcEEEee
Q 009754 84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELH----HWE----GNKLNSTIQKCYEEMIGFRDMEYLQLS 155 (526)
Q Consensus 84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~----~~~~~~~~~~l~~~~~~~~~L~~L~l~ 155 (526)
+..|+.++-.++ ++.++|.++..+.++..+.+.+.+..... .|+ -|+..+....+|..++.+.+|+-|++.
T Consensus 136 ~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 136 LLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred Hhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence 566666665554 45566666666666666665532110000 000 011123344455555555555555555
Q ss_pred cCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCC
Q 009754 156 YFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP 235 (526)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~ 235 (526)
.+. +...+ .. +.+..|+.+++..+ .++.+ |..+..+++++.+||++++ +++++|+ ....++
T Consensus 215 ~Nk-i~~lP-ef----~gcs~L~Elh~g~N-~i~~l-pae~~~~L~~l~vLDLRdN-klke~Pd----------e~clLr 275 (565)
T KOG0472|consen 215 RNK-IRFLP-EF----PGCSLLKELHVGEN-QIEML-PAEHLKHLNSLLVLDLRDN-KLKEVPD----------EICLLR 275 (565)
T ss_pred hcc-cccCC-CC----CccHHHHHHHhccc-HHHhh-HHHHhcccccceeeecccc-ccccCch----------HHHHhh
Confidence 443 22222 11 23555566655544 23332 4444556666666666655 5555554 334455
Q ss_pred ccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--------Ccccceee--ecCCCCccccchhhhhhc
Q 009754 236 KLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--------SNSVVHVT--TDNKEPQKLTSEENFLLA 305 (526)
Q Consensus 236 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--------~~~L~~L~--i~~~~~~~~~~~~~~~~~ 305 (526)
+|+.|++++. .++.+|.. .+++ .|+.|.+.+.+ ++.+- ..-++.+. +...+..... .......
T Consensus 276 sL~rLDlSNN-~is~Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se-~~~e~~~ 348 (565)
T KOG0472|consen 276 SLERLDLSNN-DISSLPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE-GGTETAM 348 (565)
T ss_pred hhhhhcccCC-ccccCCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc-ccccccC
Confidence 5666666653 34444433 3344 55555555532 21111 00011110 0000000000 0000000
Q ss_pred cccccccccCCCCCCccEEEecCCCCceEecccCChhh----------------------hhhcccceeEeccCcCcccc
Q 009754 306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESN----------------------KAFANLESLEISECSKLQKL 363 (526)
Q Consensus 306 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~----------------------~~l~~L~~L~l~~c~~l~~l 363 (526)
+.....+...-...+.+.|++++ ..++.+|.+.|.+. ..+..+.+.-+.+.+.+..+
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 00111122223344566777766 34666665543221 22222222222233344445
Q ss_pred CCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccc
Q 009754 364 VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLT 443 (526)
Q Consensus 364 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 443 (526)
|..+..+++|..|++++ +-+.++|.+ .+.+..|++|+++.. ....++.- ...+..++.+ +.....+.
T Consensus 428 ~~~l~~l~kLt~L~L~N-N~Ln~LP~e--~~~lv~Lq~LnlS~N-rFr~lP~~--------~y~lq~lEtl-las~nqi~ 494 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSN-NLLNDLPEE--MGSLVRLQTLNLSFN-RFRMLPEC--------LYELQTLETL-LASNNQIG 494 (565)
T ss_pred hHHHHhhhcceeeeccc-chhhhcchh--hhhhhhhheeccccc-ccccchHH--------HhhHHHHHHH-Hhcccccc
Confidence 55667788899999988 567788774 356778999998775 33333320 0011223333 33334677
Q ss_pred eecCC-CccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754 444 SFCLG-NYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 444 ~~~~~-~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
.++.. .. .+++|.+|++.+ ..+..+|..++.+.+|+.|++.++...
T Consensus 495 ~vd~~~l~--nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLK--NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhh--hhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 77776 33 489999999976 688889988889999999999665553
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=2.5e-19 Score=176.39 Aligned_cols=352 Identities=18% Similarity=0.207 Sum_probs=212.4
Q ss_pred CCCccEEEecCCCCc-cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 84 FPSLERVSMTHCPNM-KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 84 ~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
+|-.+..+++++..- ..+|.....+++++.|.+. .+....+|+.+..+.+|++|.++++. ++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLn---------------rt~L~~vPeEL~~lqkLEHLs~~HN~-L~~ 69 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLN---------------RTKLEQVPEELSRLQKLEHLSMAHNQ-LIS 69 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEec---------------hhhhhhChHHHHHHhhhhhhhhhhhh-hHh
Confidence 445555666655433 3466666667777777776 45566777777777777777777655 333
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
+.... +.++.|+.+.+.++.--..-.|.+ +-.+..|..||+++| +++++|. .+..-.++..|++
T Consensus 70 vhGEL----s~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~----------~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 70 VHGEL----SDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPT----------NLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhh----ccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-hhhhcch----------hhhhhcCcEEEEc
Confidence 33333 456777777776653222222333 556777777777776 6666664 3344556666777
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCccccC-----cccceeeecCCCCcc-----ccchhhhhhc-----cc
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFIS-----NSVVHVTTDNKEPQK-----LTSEENFLLA-----HQ 307 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~L~~L~i~~~~~~~-----~~~~~~~~~~-----~~ 307 (526)
++. +++.+|.. .+.++..|-.|++++ ++++.+|| ..++.|.+++++... ++++..+... .+
T Consensus 134 S~N-~IetIPn~--lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 134 SYN-NIETIPNS--LFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred ccC-ccccCCch--HHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 663 45555432 144556666666666 46666663 355666666655321 1111111110 00
Q ss_pred -cccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccc
Q 009754 308 -VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN 386 (526)
Q Consensus 308 -~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 386 (526)
+..++-++..+.+|+.++++. +++..+|... -.+++|+.|+++++ .++.+........+|+.|.++. ++++.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecl----y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~ 282 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECL----YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTV 282 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccc-cCCCcchHHH----hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhcc
Confidence 111122333445666666654 3455555443 45667777777764 4565555555556777777777 46777
Q ss_pred cccchhhhhccCCceEEEeccc-CcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCC
Q 009754 387 LLTFSTSESLVNLGRMMIADCK-MIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQC 465 (526)
Q Consensus 387 l~~~~~~~~l~~L~~L~i~~c~-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C 465 (526)
+|. .++.++.|+.|.+.+.. ..+.++. .++.+.+|+.+...+. +++-+|++... |+.|++|.+ +|
T Consensus 283 LP~--avcKL~kL~kLy~n~NkL~FeGiPS--------GIGKL~~Levf~aanN-~LElVPEglcR--C~kL~kL~L-~~ 348 (1255)
T KOG0444|consen 283 LPD--AVCKLTKLTKLYANNNKLTFEGIPS--------GIGKLIQLEVFHAANN-KLELVPEGLCR--CVKLQKLKL-DH 348 (1255)
T ss_pred chH--HHhhhHHHHHHHhccCcccccCCcc--------chhhhhhhHHHHhhcc-ccccCchhhhh--hHHHHHhcc-cc
Confidence 765 34677777777776542 1122222 2345677887777764 78899998877 999999999 57
Q ss_pred CCceeccCCCCCCCCcceEEeeccCCC
Q 009754 466 PKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 466 ~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
+.+-++|..+-.++.|+.|++..+...
T Consensus 349 NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 349 NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cceeechhhhhhcCCcceeeccCCcCc
Confidence 888899998877899999999655443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=2e-18 Score=161.88 Aligned_cols=378 Identities=16% Similarity=0.133 Sum_probs=196.7
Q ss_pred eeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCC
Q 009754 6 FYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP 85 (526)
Q Consensus 6 l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (526)
++.+++++..-....+.++.+..++.|+..+ +++.++|.++.+ +.++..|.+.+ .+++..++.. ..+.
T Consensus 116 l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~--------~~~l~~l~~~~-n~l~~l~~~~--i~m~ 183 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVN--------LSKLSKLDLEG-NKLKALPENH--IAMK 183 (565)
T ss_pred hhhhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHH--------HHHHHHhhccc-cchhhCCHHH--HHHH
Confidence 3444555555555555566666666666555 356666665544 44444444443 3344444432 2366
Q ss_pred CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc
Q 009754 86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH 165 (526)
Q Consensus 86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (526)
.|++++.-.+ -++.+|..++.+.+|..|++. .+.+..+| ++.+|+.|++++++.+. ++-++.
T Consensus 184 ~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~---------------~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpa 245 (565)
T KOG0472|consen 184 RLKHLDCNSN-LLETLPPELGGLESLELLYLR---------------RNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPA 245 (565)
T ss_pred HHHhcccchh-hhhcCChhhcchhhhHHHHhh---------------hcccccCC-CCCccHHHHHHHhcccH-HHhhHH
Confidence 7777766544 466777777777777777776 23333444 44445555555554432 221111
Q ss_pred CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754 166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (526)
Q Consensus 166 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (526)
.. ...++++..|+++++ +++.. |.. +..+.+|+.||++++ .++.+|. .++++ +|+.|.+.|.
T Consensus 246 e~---~~~L~~l~vLDLRdN-klke~-Pde-~clLrsL~rLDlSNN-~is~Lp~----------sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 246 EH---LKHLNSLLVLDLRDN-KLKEV-PDE-ICLLRSLERLDLSNN-DISSLPY----------SLGNL-HLKFLALEGN 307 (565)
T ss_pred HH---hcccccceeeecccc-ccccC-chH-HHHhhhhhhhcccCC-ccccCCc----------ccccc-eeeehhhcCC
Confidence 11 013445555555555 33333 222 444555555555554 3444443 33444 4555544443
Q ss_pred cccccccc---------------------------------------CCCccccCCCcceEeeecCCCCccccC------
Q 009754 246 PKLKRFCN---------------------------------------FTGNIIELPELQHLTIQNCPDMETFIS------ 280 (526)
Q Consensus 246 ~~l~~~~~---------------------------------------~~~~~~~~~~L~~L~l~~c~~l~~~~~------ 280 (526)
+- ..+-. ........-+.+.|++++ .+++..|.
T Consensus 308 Pl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~ 385 (565)
T KOG0472|consen 308 PL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA 385 (565)
T ss_pred ch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHh
Confidence 21 11100 000122233445555554 34444441
Q ss_pred --cccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCc
Q 009754 281 --NSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS 358 (526)
Q Consensus 281 --~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~ 358 (526)
.-+..+.++.+...+++. +...+..+.+.-+.+...+..++... ..+++|..|+++++
T Consensus 386 ~~~~Vt~VnfskNqL~elPk---------------~L~~lkelvT~l~lsnn~isfv~~~l----~~l~kLt~L~L~NN- 445 (565)
T KOG0472|consen 386 KSEIVTSVNFSKNQLCELPK---------------RLVELKELVTDLVLSNNKISFVPLEL----SQLQKLTFLDLSNN- 445 (565)
T ss_pred hhcceEEEecccchHhhhhh---------------hhHHHHHHHHHHHhhcCccccchHHH----Hhhhcceeeecccc-
Confidence 123334444443333221 00000111111112222232222222 77888999999875
Q ss_pred CccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccc
Q 009754 359 KLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYC 438 (526)
Q Consensus 359 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 438 (526)
-+.++|..++.+..|+.++++.. .++.+|. +...+..|+++-.++ .++..+... ....+.+|.+|++.+
T Consensus 446 ~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~--~~y~lq~lEtllas~-nqi~~vd~~-------~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 446 LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPE--CLYELQTLETLLASN-NQIGSVDPS-------GLKNMRNLTTLDLQN 514 (565)
T ss_pred hhhhcchhhhhhhhhheeccccc-ccccchH--HHhhHHHHHHHHhcc-ccccccChH-------HhhhhhhcceeccCC
Confidence 57889988888888999999984 6666665 333444455554443 355555441 224578899999987
Q ss_pred ccccceecCCCccCCCCCccEEEEcCCCC
Q 009754 439 LPSLTSFCLGNYALEFPSLKQVVVRQCPK 467 (526)
Q Consensus 439 c~~l~~~~~~~~~~~~~~L~~L~l~~C~~ 467 (526)
. .+..+|..... |.+|++|.+.+.|.
T Consensus 515 N-dlq~IPp~Lgn--mtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 515 N-DLQQIPPILGN--MTNLRHLELDGNPF 540 (565)
T ss_pred C-chhhCChhhcc--ccceeEEEecCCcc
Confidence 5 78899988887 99999999988543
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=1.7e-17 Score=170.71 Aligned_cols=131 Identities=16% Similarity=0.233 Sum_probs=95.7
Q ss_pred hhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccc
Q 009754 344 KAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAK 423 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 423 (526)
..++.|+.|+++++.--....+.+.++.+|+.|+++. +.+..+|.. ...+++.|+.|++++. +++.++.
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~-------- 424 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPAS-KLRKLEELEELNLSGN-KLTTLPD-------- 424 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHH-HHhchHHhHHHhcccc-hhhhhhH--------
Confidence 4566778888887643334445677889999999998 567777774 4578899999999985 5776653
Q ss_pred ccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCcee--ccCCCCCCCCcceEEeeccCC
Q 009754 424 DCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKI--FSQGVLDTPMLNKVNVTEEEK 491 (526)
Q Consensus 424 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~--lp~~~~~~~~L~~l~l~~~~~ 491 (526)
....+++|++|...+. .+..+|+ ... ++.|+.+|+ .|++++. +|... ..|+||+|+++||.+
T Consensus 425 tva~~~~L~tL~ahsN-~l~~fPe-~~~--l~qL~~lDl-S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSN-QLLSFPE-LAQ--LPQLKVLDL-SCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhhhhHHHhhcCC-ceeechh-hhh--cCcceEEec-ccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 1134788888888774 6888884 333 899999999 4788874 55544 238999999988775
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=3.6e-17 Score=168.35 Aligned_cols=390 Identities=15% Similarity=0.101 Sum_probs=211.1
Q ss_pred CceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccC
Q 009754 29 LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILST 108 (526)
Q Consensus 29 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 108 (526)
|+.|||++ +.+...|..++. +..|+.|.++. ..+...+.. ...+.+|+.+.|.++ .+..+|.++..+
T Consensus 47 L~~l~lsn-n~~~~fp~~it~--------l~~L~~ln~s~-n~i~~vp~s--~~~~~~l~~lnL~~n-~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 47 LKSLDLSN-NQISSFPIQITL--------LSHLRQLNLSR-NYIRSVPSS--CSNMRNLQYLNLKNN-RLQSLPASISEL 113 (1081)
T ss_pred eEEeeccc-cccccCCchhhh--------HHHHhhcccch-hhHhhCchh--hhhhhcchhheeccc-hhhcCchhHHhh
Confidence 77777777 367777776665 66777777663 334444322 445777777777754 567777777777
Q ss_pred CCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCc
Q 009754 109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNM 188 (526)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l 188 (526)
.+|++|+++ -+.+...|.-+..++.++.+..+++..+.. .+. ..++.+++..+...
T Consensus 114 knl~~LdlS---------------~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~--lg~-------~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 114 KNLQYLDLS---------------FNHFGPIPLVIEVLTAEEELAASNNEKIQR--LGQ-------TSIKKLDLRLNVLG 169 (1081)
T ss_pred hcccccccc---------------hhccCCCchhHHhhhHHHHHhhhcchhhhh--hcc-------ccchhhhhhhhhcc
Confidence 777777777 223333333333444444444444411111 111 11444555444332
Q ss_pred ccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEe
Q 009754 189 SSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLT 268 (526)
Q Consensus 189 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 268 (526)
..+ +.+ +..+.. .|++++|.-. .. .+..+++|+.+..... .+..+ ...-++|+.|+
T Consensus 170 ~~~-~~~-i~~l~~--~ldLr~N~~~-~~------------dls~~~~l~~l~c~rn-~ls~l------~~~g~~l~~L~ 225 (1081)
T KOG0618|consen 170 GSF-LID-IYNLTH--QLDLRYNEME-VL------------DLSNLANLEVLHCERN-QLSEL------EISGPSLTALY 225 (1081)
T ss_pred cch-hcc-hhhhhe--eeecccchhh-hh------------hhhhccchhhhhhhhc-ccceE------EecCcchheee
Confidence 222 111 223222 3666666322 21 3345566666654432 33333 22456777777
Q ss_pred eecCCCCcccc---CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhh
Q 009754 269 IQNCPDMETFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKA 345 (526)
Q Consensus 269 l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 345 (526)
..+|+-.+... |..++.++++.+....++ +|+. .+.+|+.+.... +.+..++.+. ..
T Consensus 226 a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp--~wi~-------------~~~nle~l~~n~-N~l~~lp~ri----~~ 285 (1081)
T KOG0618|consen 226 ADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP--EWIG-------------ACANLEALNANH-NRLVALPLRI----SR 285 (1081)
T ss_pred eccCcceeeccccccccceeeecchhhhhcch--HHHH-------------hcccceEecccc-hhHHhhHHHH----hh
Confidence 77765332222 566777777777766666 4443 346666666655 2345554444 45
Q ss_pred hcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchh---------------------------------
Q 009754 346 FANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFST--------------------------------- 392 (526)
Q Consensus 346 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--------------------------------- 392 (526)
.++|+.|.+..| .++.+|+....+.+|++|++.. +++.++|...+
T Consensus 286 ~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 286 ITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence 566666666554 4566666656566666666665 34555443111
Q ss_pred ---------------hhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCc
Q 009754 393 ---------------SESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSL 457 (526)
Q Consensus 393 ---------------~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 457 (526)
+.+..+|+.|++++. .+..++. .....++.|+.|.+++. +|+.+|..... ++.|
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa-------s~~~kle~LeeL~LSGN-kL~~Lp~tva~--~~~L 432 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA-------SKLRKLEELEELNLSGN-KLTTLPDTVAN--LGRL 432 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeeccc-ccccCCH-------HHHhchHHhHHHhcccc-hhhhhhHHHHh--hhhh
Confidence 122334444444442 2322222 11133556666666664 56666655544 7777
Q ss_pred cEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCCCcccccCChHHHHHHHHHhhcC
Q 009754 458 KQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDEGCWEGNLNDTIKKLFNEMNS 515 (526)
Q Consensus 458 ~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 515 (526)
++|...+ +.+..+|+ +...++|+.++++||.+.........+- +.++.+.+.++.
T Consensus 433 ~tL~ahs-N~l~~fPe-~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 433 HTLRAHS-NQLLSFPE-LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HHHhhcC-Cceeechh-hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 7776543 56777884 4478999999999999876554444321 456666666555
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=3.1e-12 Score=135.81 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 106 (526)
.+-..|+++++ .+..+|..+. ++|+.|.+.+ .+++.++. ..++|+.|+++++ +++.+|.
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~----------~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~--- 259 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP----------AHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGN-QLTSLPV--- 259 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh----------cCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCC-ccCcccC---
Confidence 34456667664 5666666432 2566666664 34554432 2466777777666 4555553
Q ss_pred cCCCeeeEEec
Q 009754 107 STPKLHKVQVT 117 (526)
Q Consensus 107 ~~~~L~~L~l~ 117 (526)
..++|+.|++.
T Consensus 260 lp~sL~~L~Ls 270 (788)
T PRK15387 260 LPPGLLELSIF 270 (788)
T ss_pred cccccceeecc
Confidence 23456666665
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.9e-12 Score=137.53 Aligned_cols=257 Identities=17% Similarity=0.141 Sum_probs=173.4
Q ss_pred CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754 147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD 226 (526)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 226 (526)
..-..|+++++. ++.++... .++|+.|.+.++ +++.++. ..++|++|++++| +++.+|.
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l------~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~------- 259 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV------- 259 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcch------hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccC-------
Confidence 556778888774 55433322 357899999887 5666532 3578999999887 6777653
Q ss_pred cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhh
Q 009754 227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLL 304 (526)
Q Consensus 227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~ 304 (526)
..++|+.|+++++ .+..++. .+.+|+.|+++++ +++.++ +.+|+.|+++++.+..++...
T Consensus 260 ------lp~sL~~L~Ls~N-~L~~Lp~------lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---- 321 (788)
T PRK15387 260 ------LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALP---- 321 (788)
T ss_pred ------cccccceeeccCC-chhhhhh------chhhcCEEECcCC-ccccccccccccceeECCCCccccCCCCc----
Confidence 2468888888875 3555533 3457888888884 677665 467888888887766654321
Q ss_pred ccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCc
Q 009754 305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGL 384 (526)
Q Consensus 305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 384 (526)
.+|+.|.+.++ .++.++. ...+|+.|+++++ .++.+|.. .++|+.|++++ +.+
T Consensus 322 --------------~~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~-N~L 374 (788)
T PRK15387 322 --------------SELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYN-NRL 374 (788)
T ss_pred --------------ccccccccccC-ccccccc-------cccccceEecCCC-ccCCCCCC---Ccccceehhhc-ccc
Confidence 56777777774 4555542 2357888888875 56777653 35677788877 456
Q ss_pred cccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcC
Q 009754 385 INLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQ 464 (526)
Q Consensus 385 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 464 (526)
..+|.. .++|+.|+++++ .++.++. .+++|+.|+++++ .++.+|.. ...|+.|++++
T Consensus 375 ~~LP~l-----~~~L~~LdLs~N-~Lt~LP~-----------l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~ 431 (788)
T PRK15387 375 TSLPAL-----PSGLKELIVSGN-RLTSLPV-----------LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR 431 (788)
T ss_pred ccCccc-----ccccceEEecCC-cccCCCC-----------cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc
Confidence 666541 246888888775 4554443 2467888888886 57776642 35678888877
Q ss_pred CCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754 465 CPKMKIFSQGVLDTPMLNKVNVTEEEKDD 493 (526)
Q Consensus 465 C~~l~~lp~~~~~~~~L~~l~l~~~~~~~ 493 (526)
++++.+|..+..+++|+.+++++|++..
T Consensus 432 -NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 432 -NQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred -CcccccChHHhhccCCCeEECCCCCCCc
Confidence 5678888877678888888887777653
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=4.6e-15 Score=140.45 Aligned_cols=295 Identities=17% Similarity=0.168 Sum_probs=155.7
Q ss_pred CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754 147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD 226 (526)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 226 (526)
..|+.|.++++..+.+.+... +. ..++++++|.+.+|.++++..-..+...++.|+++++..|..+++..-..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt-~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~----- 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT-FA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY----- 210 (483)
T ss_pred cccccccccccccCCcchhhH-Hh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-----
Confidence 467788888877666544333 22 45778888888888777765444456677888888888777777654211
Q ss_pred cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccC-------cccceeeecCCCCccccch
Q 009754 227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFIS-------NSVVHVTTDNKEPQKLTSE 299 (526)
Q Consensus 227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-------~~L~~L~i~~~~~~~~~~~ 299 (526)
....+++|+++++++|+.+.+-. .....+.+..++.+...+|..++.-.. ..+.++++..|...+-..+
T Consensus 211 ---la~gC~kL~~lNlSwc~qi~~~g-v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 211 ---LAEGCRKLKYLNLSWCPQISGNG-VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred ---HHHhhhhHHHhhhccCchhhcCc-chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 22357778888888777666411 111133455566666666654432210 0111222222221111111
Q ss_pred hhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC--CCCCCCCCCCEEe
Q 009754 300 ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALE 377 (526)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~ 377 (526)
..+ ...+..|+.|+.++|.++++.....+. .+..+|+.+.+.+|..+++.- ..-.+.+.|+.++
T Consensus 287 ~~i------------~~~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 287 WLI------------ACGCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred HHH------------hhhhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 100 113456666666666655443322211 455666666666666554331 1223445666666
Q ss_pred eccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCc
Q 009754 378 VSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSL 457 (526)
Q Consensus 378 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 457 (526)
+.+|....+-.....+.+++.|+.|.++.|..+++..... ....-.....|+.+++.+||.+++....... .|++|
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~---l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~L 428 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH---LSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNL 428 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh---hhhccccccccceeeecCCCCchHHHHHHHh-hCccc
Confidence 6666555554333344566666666666666555441100 0000012345666666776666544333221 36667
Q ss_pred cEEEEcCCCCcee
Q 009754 458 KQVVVRQCPKMKI 470 (526)
Q Consensus 458 ~~L~l~~C~~l~~ 470 (526)
+.+++.+|..+++
T Consensus 429 eri~l~~~q~vtk 441 (483)
T KOG4341|consen 429 ERIELIDCQDVTK 441 (483)
T ss_pred ceeeeechhhhhh
Confidence 7777766666654
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.36 E-value=1.6e-14 Score=136.75 Aligned_cols=282 Identities=16% Similarity=0.150 Sum_probs=206.4
Q ss_pred CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (526)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 254 (526)
.-|+.|.+++|..+.+.+.......+|++++|++.+|..+++..-.. ....+++|++|.+-.|..+++....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s--------la~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS--------LARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH--------HHHhcchhhhhhhcccchhHHHHHH
Confidence 56899999999988776555567899999999999999888754222 4467899999999999998876432
Q ss_pred CCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEec
Q 009754 255 TGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELS 327 (526)
Q Consensus 255 ~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 327 (526)
.- ...|++|++|.++.|+.+++.. -..++++..+||...++..+..+. ..++-+.++++.
T Consensus 210 ~l-a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~------------~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 210 YL-AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA------------AYCLEILKLNLQ 276 (483)
T ss_pred HH-HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh------------ccChHhhccchh
Confidence 11 5579999999999999888743 223556666677666554444332 233556677777
Q ss_pred CCCCceEecccCChhhhhhcccceeEeccCcCccccCC--CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEe
Q 009754 328 GLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA 405 (526)
Q Consensus 328 ~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 405 (526)
+|..+++... +.....+..|+.+..++|..+++.+- -.++.++|+.+.+..|.++.+.....+..+++.|+.+++.
T Consensus 277 ~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 277 HCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 8877766532 22226688999999999988776542 2356799999999999999998776677889999999999
Q ss_pred cccCcceeeccCCcccccccccccccceeeccccccccee-----cCCCccCCCCCccEEEEcCCCCceecc-CCCCCCC
Q 009754 406 DCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSF-----CLGNYALEFPSLKQVVVRQCPKMKIFS-QGVLDTP 479 (526)
Q Consensus 406 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~ 479 (526)
+|..+.+-... ..-..++.|+.|.+++|..+++. .....+ ...|+.+.+.+||.++.-- .....++
T Consensus 355 ~~~~~~d~tL~------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~--~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 355 ECGLITDGTLA------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS--LEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred ccceehhhhHh------hhccCCchhccCChhhhhhhhhhhhhhhhhcccc--ccccceeeecCCCCchHHHHHHHhhCc
Confidence 98755543110 00146899999999999887766 333333 7789999999999987522 2344678
Q ss_pred CcceEEee
Q 009754 480 MLNKVNVT 487 (526)
Q Consensus 480 ~L~~l~l~ 487 (526)
+||.++++
T Consensus 427 ~Leri~l~ 434 (483)
T KOG4341|consen 427 NLERIELI 434 (483)
T ss_pred ccceeeee
Confidence 99998884
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=3.5e-11 Score=130.60 Aligned_cols=161 Identities=18% Similarity=0.181 Sum_probs=108.8
Q ss_pred ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccc-cccccccCceecCCCccEEEecCCCCc
Q 009754 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT-LTSFCLENYTLEFPSLERVSMTHCPNM 98 (526)
Q Consensus 20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~c~~l 98 (526)
.+........+...+-+ +.+..++.... .++|++|-+.+... +...... ....+|.|+.|++++|..+
T Consensus 516 ~~~~~~~~~~rr~s~~~-~~~~~~~~~~~---------~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMN-NKIEHIAGSSE---------NPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred cccccchhheeEEEEec-cchhhccCCCC---------CCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCcc
Confidence 44455556667777766 46666665443 45788887776432 2222221 1335899999999999999
Q ss_pred cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc
Q 009754 99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA 178 (526)
Q Consensus 99 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 178 (526)
..+|..+..+-+|++|+++ .+.+..+|..+..+..|.+|++.....+...+... ..+++|+
T Consensus 585 ~~LP~~I~~Li~LryL~L~---------------~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr 645 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLS---------------DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLR 645 (889)
T ss_pred CcCChHHhhhhhhhccccc---------------CCCccccchHHHHHHhhheeccccccccccccchh----hhccccc
Confidence 9999999999999999998 45667889999999999999999877655443332 4488999
Q ss_pred EEEEecCCCcccCCChHHHhcCCCCCeeeecc
Q 009754 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRN 210 (526)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~ 210 (526)
+|.+.......+..-.+.+.++.+|+.+.+..
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhheeec
Confidence 99887654111111222245555555555543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=6.9e-11 Score=126.37 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754 147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD 226 (526)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 226 (526)
.+...|++++.. ++.++... .++|+.|++++| .++.+ |.. ..++|++|++++| .++.+|.
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~I------p~~L~~L~Ls~N-~LtsL-P~~---l~~nL~~L~Ls~N-~LtsLP~------- 237 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACI------PEQITTLILDNN-ELKSL-PEN---LQGNIKTLYANSN-QLTSIPA------- 237 (754)
T ss_pred cCceEEEeCCCC-cCcCCccc------ccCCcEEEecCC-CCCcC-Chh---hccCCCEEECCCC-ccccCCh-------
Confidence 466788887754 44433322 357899999887 56665 433 2358999999887 5666653
Q ss_pred cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc
Q 009754 227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI 279 (526)
Q Consensus 227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 279 (526)
...++|+.|+++++. +..+|.. ...+|+.|++++ ++++.++
T Consensus 238 -----~l~~~L~~L~Ls~N~-L~~LP~~-----l~s~L~~L~Ls~-N~L~~LP 278 (754)
T PRK15370 238 -----TLPDTIQEMELSINR-ITELPER-----LPSALQSLDLFH-NKISCLP 278 (754)
T ss_pred -----hhhccccEEECcCCc-cCcCChh-----HhCCCCEEECcC-CccCccc
Confidence 123578889988863 5555432 235788888886 4666554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=8.4e-11 Score=125.74 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=35.5
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 106 (526)
.+...|++++. ++..+|..+. ++++.|++.++ +++.++.. .+++|+.|++++| .++.+|..+
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip----------~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l- 239 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP----------EQITTLILDNN-ELKSLPEN----LQGNIKTLYANSN-QLTSIPATL- 239 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc----------cCCcEEEecCC-CCCcCChh----hccCCCEEECCCC-ccccCChhh-
Confidence 34556666663 5666665332 24556666543 44444332 1345666666655 345554322
Q ss_pred cCCCeeeEEec
Q 009754 107 STPKLHKVQVT 117 (526)
Q Consensus 107 ~~~~L~~L~l~ 117 (526)
..+|+.|+++
T Consensus 240 -~~~L~~L~Ls 249 (754)
T PRK15370 240 -PDTIQEMELS 249 (754)
T ss_pred -hccccEEECc
Confidence 1244455544
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=6.8e-10 Score=120.72 Aligned_cols=216 Identities=18% Similarity=0.263 Sum_probs=139.6
Q ss_pred cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (526)
Q Consensus 23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 102 (526)
|..++.|++|||++|..+..+|..|++ +-+|++|++++ ..++.+|.+ ...+..|.+|++.....+...|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~-t~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSD-TGISHLPSG--LGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccC-CCccccchH--HHHHHhhheecccccccccccc
Confidence 777999999999999999999999988 77999999986 567777776 4578899999999888887776
Q ss_pred cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc----
Q 009754 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA---- 178 (526)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~---- 178 (526)
.....+.+|++|.+..-. ..........+..+.+|+.+....... . +.... ..++.|.
T Consensus 636 ~i~~~L~~Lr~L~l~~s~------------~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~l----~~~~~L~~~~~ 697 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSA------------LSNDKLLLKELENLEHLENLSITISSV-L-LLEDL----LGMTRLRSLLQ 697 (889)
T ss_pred chhhhcccccEEEeeccc------------cccchhhHHhhhcccchhhheeecchh-H-hHhhh----hhhHHHHHHhH
Confidence 666669999999988311 111122333445677777777755442 1 00000 1233333
Q ss_pred EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCC-CCCccceEecCCCccccccccCCCc
Q 009754 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGP-LFPKLYGLRLIDLPKLKRFCNFTGN 257 (526)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~ 257 (526)
.+.+.+|...+.. +. +..+++|+.|.+.+|...+....-.+.. ... .|+++..+.+.+|....+.. +
T Consensus 698 ~l~~~~~~~~~~~-~~--~~~l~~L~~L~i~~~~~~e~~~~~~~~~-----~~~~~f~~l~~~~~~~~~~~r~l~-~--- 765 (889)
T KOG4658|consen 698 SLSIEGCSKRTLI-SS--LGSLGNLEELSILDCGISEIVIEWEESL-----IVLLCFPNLSKVSILNCHMLRDLT-W--- 765 (889)
T ss_pred hhhhcccccceee-cc--cccccCcceEEEEcCCCchhhccccccc-----chhhhHHHHHHHHhhccccccccc-h---
Confidence 3333333322222 22 7788999999999986654433111000 111 26677777777776666542 2
Q ss_pred cccCCCcceEeeecCCCCcccc
Q 009754 258 IIELPELQHLTIQNCPDMETFI 279 (526)
Q Consensus 258 ~~~~~~L~~L~l~~c~~l~~~~ 279 (526)
....|+|+.|.+..|..+++..
T Consensus 766 ~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 766 LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hhccCcccEEEEecccccccCC
Confidence 3356889999999887666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.79 E-value=1.1e-10 Score=97.82 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=58.3
Q ss_pred cccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCc
Q 009754 19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM 98 (526)
Q Consensus 19 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 98 (526)
.++-+-.+.+++.|.+++ +++..+|..|.+ +.+|+.|++.+ ..+++++.. ...++.|++|++.-+ .+
T Consensus 25 ~~~gLf~~s~ITrLtLSH-NKl~~vppnia~--------l~nlevln~~n-nqie~lp~~--issl~klr~lnvgmn-rl 91 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSH-NKLTVVPPNIAE--------LKNLEVLNLSN-NQIEELPTS--ISSLPKLRILNVGMN-RL 91 (264)
T ss_pred hcccccchhhhhhhhccc-CceeecCCcHHH--------hhhhhhhhccc-chhhhcChh--hhhchhhhheecchh-hh
Confidence 344455677778888888 478888887776 67777777775 345555554 345777777776644 46
Q ss_pred cccccCcccCCCeeeEEec
Q 009754 99 KTFSHGILSTPKLHKVQVT 117 (526)
Q Consensus 99 ~~l~~~~~~~~~L~~L~l~ 117 (526)
..+|+|+.+++.|+.|++.
T Consensus 92 ~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hcCccccCCCchhhhhhcc
Confidence 6667777777777766666
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.78 E-value=2.1e-10 Score=96.17 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=105.3
Q ss_pred CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCcee
Q 009754 84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI 163 (526)
Q Consensus 84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 163 (526)
+.++..|.++++ +++.+|..+..+.+|+.|++. ++-+.++|.++..++.|+.|++..+. +.-.
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~---------------nnqie~lp~~issl~klr~lnvgmnr-l~~l 94 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLS---------------NNQIEELPTSISSLPKLRILNVGMNR-LNIL 94 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcc---------------cchhhhcChhhhhchhhhheecchhh-hhcC
Confidence 455666777776 577777777778888888776 67777777777777777777776544 3334
Q ss_pred ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecC
Q 009754 164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLI 243 (526)
Q Consensus 164 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 243 (526)
+.+. ++++.|+.|++..+.--+...|.+ +..+..|+.|.++++ ..+.+|. ..+.+++|+.|.+.
T Consensus 95 prgf----gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dn-dfe~lp~----------dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 95 PRGF----GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDN-DFEILPP----------DVGKLTNLQILSLR 158 (264)
T ss_pred cccc----CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCC-CcccCCh----------hhhhhcceeEEeec
Confidence 4444 567777777777664333333433 556677777777776 5666665 44567777777777
Q ss_pred CCccccccccCCCccccCCCcceEeeecCCCCccccC
Q 009754 244 DLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFIS 280 (526)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 280 (526)
.. ++-.+|.. ++.+..|+.|++++ ++++.+||
T Consensus 159 dn-dll~lpke---ig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 159 DN-DLLSLPKE---IGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred cC-chhhCcHH---HHHHHHHHHHhccc-ceeeecCh
Confidence 64 33445444 56777888888887 56666653
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=2e-09 Score=105.90 Aligned_cols=73 Identities=16% Similarity=0.018 Sum_probs=35.1
Q ss_pred HHhhhhhcCCCCCcEEEeecCCCCceeccCC-CCCcCCCCCccEEEEecCCCcccCCC---hHHHhcC-CCCCeeeeccc
Q 009754 137 QKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ-ALPVSFFNNLARLVVDDCTNMSSAIP---ANLLRCL-NNLQWLEVRNC 211 (526)
Q Consensus 137 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~l~~l-~~L~~L~l~~~ 211 (526)
..+...+..+++|+.|+++++.-........ .+. .. ++|++|++++|. +.+... ...+..+ ++|++|++++|
T Consensus 71 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL-RS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh-cc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 3444555556777777777765221111100 011 11 447777777663 221100 0113444 66777777776
Q ss_pred c
Q 009754 212 D 212 (526)
Q Consensus 212 ~ 212 (526)
.
T Consensus 148 ~ 148 (319)
T cd00116 148 R 148 (319)
T ss_pred c
Confidence 4
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.65 E-value=1.7e-09 Score=106.52 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=18.2
Q ss_pred CCCccEEEEecCCCcccCC---ChHHHhcCCCCCeeeeccc
Q 009754 174 FNNLARLVVDDCTNMSSAI---PANLLRCLNNLQWLEVRNC 211 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~---~~~~l~~l~~L~~L~l~~~ 211 (526)
+.+|++|.+.+|. ++... ....+...+.+++++++++
T Consensus 22 l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 22 LLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLN 61 (319)
T ss_pred HhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccc
Confidence 4556666666663 21100 0112445556666666655
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.6e-09 Score=99.77 Aligned_cols=214 Identities=15% Similarity=0.193 Sum_probs=132.7
Q ss_pred CcCCCceEEecccccccEeccccccccccccccccccceeeecccccccccc-ccCceecCCCccEEEecCCCCcccccc
Q 009754 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFC-LENYTLEFPSLERVSMTHCPNMKTFSH 103 (526)
Q Consensus 25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~ 103 (526)
++..|+...|++| .+...+.. .....|++++.|+++.. -+..|. .......+|+|+.|+++.+. +.....
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~------~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIE------EYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFIS 189 (505)
T ss_pred hHHhhhheeecCc-cccccchh------hhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCcc
Confidence 6778888888887 56665531 12234888888888863 233332 22334568999999988763 222111
Q ss_pred Cc--ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEE
Q 009754 104 GI--LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV 181 (526)
Q Consensus 104 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 181 (526)
.. ..+++|..|.+++| +-...++-.....+++|+.|++.++..+....... .-+..|+.|+
T Consensus 190 s~~~~~l~~lK~L~l~~C-------------Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~----~i~~~L~~Ld 252 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSC-------------GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST----KILQTLQELD 252 (505)
T ss_pred ccchhhhhhhheEEeccC-------------CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh----hhhhHHhhcc
Confidence 11 23678888888865 22245555555678999999998875332111111 3367788899
Q ss_pred EecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC
Q 009754 182 VDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL 261 (526)
Q Consensus 182 l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 261 (526)
++++..+ +.......+.+|.|+.|.++.| .+.++...++.- -.....|++|++|++... .+.+|+.... +..+
T Consensus 253 Ls~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s---~~kt~~f~kL~~L~i~~N-~I~~w~sl~~-l~~l 325 (505)
T KOG3207|consen 253 LSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVES---LDKTHTFPKLEYLNISEN-NIRDWRSLNH-LRTL 325 (505)
T ss_pred ccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCccc---hhhhcccccceeeecccC-ccccccccch-hhcc
Confidence 9888544 3333334788889999998887 566654332100 002356889999988875 4555544433 6677
Q ss_pred CCcceEeeec
Q 009754 262 PELQHLTIQN 271 (526)
Q Consensus 262 ~~L~~L~l~~ 271 (526)
++|+.|.+..
T Consensus 326 ~nlk~l~~~~ 335 (505)
T KOG3207|consen 326 ENLKHLRITL 335 (505)
T ss_pred chhhhhhccc
Confidence 7788777654
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-09 Score=98.21 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=55.3
Q ss_pred hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754 143 MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE 222 (526)
Q Consensus 143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 222 (526)
+..|..|+.|.+.+..--.++...+ ..-.+|+.|+++.|..++.....-++.+|+.|..|++++|....+.....
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~i----AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~- 280 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTI----AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA- 280 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHH----hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH-
Confidence 3445566666665544111222222 22355666666666555543222345566666666666665444332110
Q ss_pred cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCc
Q 009754 223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDME 276 (526)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 276 (526)
...--++|+.|+++|+..--.......-...+|+|.+|++++|..++
T Consensus 281 -------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 281 -------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred -------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 11122456666666654311111011113355566666666554433
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.4e-08 Score=97.48 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=111.5
Q ss_pred CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (526)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 251 (526)
..+.+|+.+.+.+| .+...+..+....|++.+.||++++ -+..+..... ....+|+|+.|+++.......+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~-------i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLK-------IAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHH-------HHHhcccchhcccccccccCCc
Confidence 55778888888877 4554433345788999999999887 3433321110 3457899999999875432222
Q ss_pred ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (526)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 331 (526)
.... ...+++|+.|.++.|. ++.- . .-++ ...||+|+.|.+.....
T Consensus 189 -~s~~-~~~l~~lK~L~l~~CG-ls~k---~----------------V~~~------------~~~fPsl~~L~L~~N~~ 234 (505)
T KOG3207|consen 189 -SSNT-TLLLSHLKQLVLNSCG-LSWK---D----------------VQWI------------LLTFPSLEVLYLEANEI 234 (505)
T ss_pred -cccc-hhhhhhhheEEeccCC-CCHH---H----------------HHHH------------HHhCCcHHHhhhhcccc
Confidence 1111 3467788888888873 2210 0 0111 12468888888887643
Q ss_pred ceEecccCChhhhhhcccceeEeccCcCccccC--CCCCCCCCCCEEeeccccCccccccchh-----hhhccCCceEEE
Q 009754 332 VQHLWKENDESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALEVSKCHGLINLLTFST-----SESLVNLGRMMI 404 (526)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~l~~L~~L~i 404 (526)
+.....+. ..++.|++|+|++++.+ +.+ ...+.++.|..|.++.| .+.++..-.. ...+++|++|++
T Consensus 235 ~~~~~~~~----~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 235 ILIKATST----KILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred cceecchh----hhhhHHhhccccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeec
Confidence 33222222 66788899999887543 333 44567788888888875 3444321111 235667777777
Q ss_pred ecc
Q 009754 405 ADC 407 (526)
Q Consensus 405 ~~c 407 (526)
...
T Consensus 309 ~~N 311 (505)
T KOG3207|consen 309 SEN 311 (505)
T ss_pred ccC
Confidence 654
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.41 E-value=2.4e-08 Score=94.73 Aligned_cols=262 Identities=18% Similarity=0.194 Sum_probs=143.5
Q ss_pred CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (526)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 254 (526)
+.-+.|.+..+ .++.+ |.+.|+.+++|+.|||++| +++.|..- .+..+++|.+|.+++..++++++.
T Consensus 67 ~~tveirLdqN-~I~~i-P~~aF~~l~~LRrLdLS~N-~Is~I~p~---------AF~GL~~l~~Lvlyg~NkI~~l~k- 133 (498)
T KOG4237|consen 67 PETVEIRLDQN-QISSI-PPGAFKTLHRLRRLDLSKN-NISFIAPD---------AFKGLASLLSLVLYGNNKITDLPK- 133 (498)
T ss_pred CcceEEEeccC-CcccC-Chhhccchhhhceeccccc-chhhcChH---------hhhhhHhhhHHHhhcCCchhhhhh-
Confidence 45677778776 46666 5666899999999999988 66666421 445677888888888778888743
Q ss_pred CCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE
Q 009754 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH 334 (526)
Q Consensus 255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 334 (526)
+.+..+.+|+.|.+..+ ++.......+++| +++..|.+.+ +.++.
T Consensus 134 -~~F~gL~slqrLllNan-~i~Cir~~al~dL--------------------------------~~l~lLslyD-n~~q~ 178 (498)
T KOG4237|consen 134 -GAFGGLSSLQRLLLNAN-HINCIRQDALRDL--------------------------------PSLSLLSLYD-NKIQS 178 (498)
T ss_pred -hHhhhHHHHHHHhcChh-hhcchhHHHHHHh--------------------------------hhcchhcccc-hhhhh
Confidence 33667777777777653 3433332222111 2333333332 12222
Q ss_pred ecccCChhhhhhcccceeEeccCcCcc------------ccCCCCCCC----------------------CCCCEE--e-
Q 009754 335 LWKENDESNKAFANLESLEISECSKLQ------------KLVPPSWHL----------------------ENLEAL--E- 377 (526)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~c~~l~------------~l~~~~~~l----------------------~~L~~L--~- 377 (526)
+....+ ..+.+++.+.+...+.+. ..|...+.+ -+++.+ .
T Consensus 179 i~~~tf---~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~ 255 (498)
T KOG4237|consen 179 ICKGTF---QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRL 255 (498)
T ss_pred hccccc---cchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhh
Confidence 222211 223333333333222000 000000000 011111 0
Q ss_pred eccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCc
Q 009754 378 VSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSL 457 (526)
Q Consensus 378 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 457 (526)
-..|. .....+...+..+++|+.|++++. +++.+.. +.. .....++.|.+... +++.+..+... .+..|
T Consensus 256 ~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~---~aF----e~~a~l~eL~L~~N-~l~~v~~~~f~-~ls~L 324 (498)
T KOG4237|consen 256 SSEDF-PDSICPAKCFKKLPNLRKLNLSNN-KITRIED---GAF----EGAAELQELYLTRN-KLEFVSSGMFQ-GLSGL 324 (498)
T ss_pred ccccC-cCCcChHHHHhhcccceEeccCCC-ccchhhh---hhh----cchhhhhhhhcCcc-hHHHHHHHhhh-ccccc
Confidence 11121 112222223577899999999884 5666643 211 23578888888875 67777776543 58889
Q ss_pred cEEEEcCCCCce-eccCCCCCCCCcceEEeeccCC-CCCccccc
Q 009754 458 KQVVVRQCPKMK-IFSQGVLDTPMLNKVNVTEEEK-DDDEGCWE 499 (526)
Q Consensus 458 ~~L~l~~C~~l~-~lp~~~~~~~~L~~l~l~~~~~-~~~~~~~~ 499 (526)
+.|++++. +++ .-|..+....+|..+.+-.+.+ =+....|-
T Consensus 325 ~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 325 KTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred eeeeecCC-eeEEEecccccccceeeeeehccCcccCccchHHH
Confidence 99999884 555 4566677788888888833322 23344444
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=4.9e-06 Score=81.87 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK 249 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 249 (526)
+.++++|++++| .++.+| . --++|++|.+++|..++.+|+ . ..++|+.|.+++|..+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-~----LP~sLtsL~Lsnc~nLtsLP~----------~--LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-V----LPNELTEITIENCNNLTTLPG----------S--IPEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-C----CCCCCcEEEccCCCCcccCCc----------h--hhhhhhheEccCccccc
Confidence 456666666666 444442 1 112466666666666555543 1 12456666666655444
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1e-08 Score=93.73 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=19.6
Q ss_pred CCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccC
Q 009754 368 WHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM 409 (526)
Q Consensus 368 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 409 (526)
..+|+|.+||+++|..+++--. ..+..++-|++|.++.|..
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HhCCceeeeccccccccCchHH-HHHHhcchheeeehhhhcC
Confidence 3445555555555555544211 1123445555555555543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=9.2e-07 Score=77.43 Aligned_cols=110 Identities=28% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (526)
.+.+|+.|+++++. ++.+.. . ..+++|+.|.++++ .++.+ ...+...+|+|++|.+++| ++.++.++.
T Consensus 40 ~l~~L~~L~Ls~N~-I~~l~~-l----~~L~~L~~L~L~~N-~I~~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~l~--- 107 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ-ITKLEG-L----PGLPRLKTLDLSNN-RISSI-SEGLDKNLPNLQELYLSNN-KISDLNELE--- 107 (175)
T ss_dssp T-TT--EEE-TTS---S--TT---------TT--EEE--SS----S--CHHHHHH-TT--EEE-TTS----SCCCCG---
T ss_pred hhcCCCEEECCCCC-CccccC-c----cChhhhhhcccCCC-CCCcc-ccchHHhCCcCCEEECcCC-cCCChHHhH---
Confidence 35778888888776 443321 1 35788999999887 45554 3333457899999999887 666665544
Q ss_pred cccCCCCCCCCccceEecCCCccccccccCC-CccccCCCcceEeeecC
Q 009754 225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT-GNIIELPELQHLTIQNC 272 (526)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c 272 (526)
.+..+++|+.|.+.+++- ++.+... ..+..+|+|+.|+-...
T Consensus 108 -----~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 108 -----PLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -----GGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -----HHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 566789999999988764 2222111 12567888888887664
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=5.3e-06 Score=81.63 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=78.6
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (526)
+++++.|++++| .++++| ..+++|++|.+.+|..++.+|..+. ++|++|++++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------- 112 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------- 112 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc--------
Confidence 378888888887 677775 2235788888888888888776543 5788888888877765543
Q ss_pred CCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCC-CCccEEEEcCCCCceeccCCCC
Q 009754 398 NLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEF-PSLKQVVVRQCPKMKIFSQGVL 476 (526)
Q Consensus 398 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~C~~l~~lp~~~~ 476 (526)
+|+.|++.. .....+.. .+++|+.|.+.++.......... .+ ++|++|++.+|..+. +|..+
T Consensus 113 sLe~L~L~~-n~~~~L~~-----------LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~L- 175 (426)
T PRK15386 113 SVRSLEIKG-SATDSIKN-----------VPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKL- 175 (426)
T ss_pred ccceEEeCC-CCCccccc-----------CcchHhheecccccccccccccc---ccCCcccEEEecCCCccc-Ccccc-
Confidence 366677643 22222211 24566666664322111110000 12 467777777766553 44332
Q ss_pred CCCCcceEEe
Q 009754 477 DTPMLNKVNV 486 (526)
Q Consensus 477 ~~~~L~~l~l 486 (526)
+++|+.|.+
T Consensus 176 -P~SLk~L~l 184 (426)
T PRK15386 176 -PESLQSITL 184 (426)
T ss_pred -cccCcEEEe
Confidence 456666666
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.18 E-value=3e-08 Score=94.15 Aligned_cols=81 Identities=12% Similarity=0.242 Sum_probs=47.5
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 106 (526)
+.-..++|+. +.|..||..... .+++|+.|+|+. ..++.+.++.. ..+++|-.|.+.+..+++++|.+.+
T Consensus 67 ~~tveirLdq-N~I~~iP~~aF~-------~l~~LRrLdLS~-N~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQ-NQISSIPPGAFK-------TLHRLRRLDLSK-NNISFIAPDAF-KGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcceEEEecc-CCcccCChhhcc-------chhhhceecccc-cchhhcChHhh-hhhHhhhHHHhhcCCchhhhhhhHh
Confidence 4556677777 467777664322 267777777775 44555555542 2456666666666556777665543
Q ss_pred -cCCCeeeEEec
Q 009754 107 -STPKLHKVQVT 117 (526)
Q Consensus 107 -~~~~L~~L~l~ 117 (526)
.+..++.|.+.
T Consensus 137 ~gL~slqrLllN 148 (498)
T KOG4237|consen 137 GGLSSLQRLLLN 148 (498)
T ss_pred hhHHHHHHHhcC
Confidence 35566666655
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.17 E-value=1.4e-07 Score=98.45 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=60.6
Q ss_pred cCCCccEEEecCCCCccc--cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCC
Q 009754 83 EFPSLERVSMTHCPNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL 160 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 160 (526)
.+++|+.+.+.+|..+.. +-......++|+.|++.++... + .... .........+.+|+.++++++..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~----~~~~-~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL----I----TLSP-LLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc----c----ccch-hHhhhhhhhcCCcCccchhhhhcc
Confidence 378888888888877665 2223334566666666532000 0 0000 000112224466666666666554
Q ss_pred ceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeecccccc
Q 009754 161 KEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSI 214 (526)
Q Consensus 161 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l 214 (526)
++..... +. ..+++|++|.+.+|..+++..-..+...++.|++|++++|..+
T Consensus 257 sd~~l~~-l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 257 TDIGLSA-LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CchhHHH-HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 4433222 11 2255666666666654443323333455666666666666554
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.03 E-value=1.1e-07 Score=99.16 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=19.0
Q ss_pred cceeecccccccceecCCCccCCCCCccEEEEcCCCCce
Q 009754 431 LRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMK 469 (526)
Q Consensus 431 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 469 (526)
++.|.+..|...+..........+..++.+++.+|+.+.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 566666666554443332222114455555555555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=1.5e-06 Score=79.78 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=55.3
Q ss_pred hhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754 134 STIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS 213 (526)
Q Consensus 134 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (526)
+.|..+-+++.-.+.++.|+++++. +..+.. . ..+++|+.|+++++. ++.+ .+.-.++.+.+.|.+++| .
T Consensus 294 N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-L----a~L~~L~~LDLS~N~-Ls~~--~Gwh~KLGNIKtL~La~N-~ 363 (490)
T KOG1259|consen 294 NLITQIDESVKLAPKLRRLILSQNR-IRTVQN-L----AELPQLQLLDLSGNL-LAEC--VGWHLKLGNIKTLKLAQN-K 363 (490)
T ss_pred cchhhhhhhhhhccceeEEeccccc-eeeehh-h----hhcccceEeecccch-hHhh--hhhHhhhcCEeeeehhhh-h
Confidence 4444444455455556666665554 221111 1 234556666665542 2221 111234555566666555 3
Q ss_pred cchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecC
Q 009754 214 IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC 272 (526)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 272 (526)
++.+. .++.+=+|.+|+++++ ++..+....+ ++++|.|+++.+.+.
T Consensus 364 iE~LS-----------GL~KLYSLvnLDl~~N-~Ie~ldeV~~-IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 364 IETLS-----------GLRKLYSLVNLDLSSN-QIEELDEVNH-IGNLPCLETLRLTGN 409 (490)
T ss_pred Hhhhh-----------hhHhhhhheecccccc-chhhHHHhcc-cccccHHHHHhhcCC
Confidence 44332 2334455555666553 3444433344 556666666666653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.85 E-value=1e-05 Score=70.91 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=38.1
Q ss_pred CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (526)
.+..+++|+++++. ++.+.. +. ..+.+|+.|++++| .++.+.. +..++.|++|++++| .++.+.+.
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie~---L~-~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i~~~---- 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIEN---LG-ATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSISEG---- 82 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CHH----
T ss_pred cccccccccccccc-cccccc---hh-hhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCccccc----
Confidence 44567888888876 332211 11 24789999999998 4555533 788999999999988 66666420
Q ss_pred cccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCC
Q 009754 225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP 273 (526)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 273 (526)
....+|+|+.|.++++ .+.++..... ...+++|+.|++.++|
T Consensus 83 -----l~~~lp~L~~L~L~~N-~I~~l~~l~~-L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 -----LDKNLPNLQELYLSNN-KISDLNELEP-LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -----HHHH-TT--EEE-TTS----SCCCCGG-GGG-TT--EEE-TT-G
T ss_pred -----hHHhCCcCCEEECcCC-cCCChHHhHH-HHcCCCcceeeccCCc
Confidence 1125899999999874 5666544433 6789999999999865
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.60 E-value=4.4e-05 Score=77.50 Aligned_cols=147 Identities=15% Similarity=0.240 Sum_probs=86.2
Q ss_pred CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc
Q 009754 86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH 165 (526)
Q Consensus 86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (526)
+|+.|++++. .++.+|..+..+++|+.|+++ .+.+.+++......++|+.|+++++. +.+++.
T Consensus 141 nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~---------------~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~ 203 (394)
T COG4886 141 NLKELDLSDN-KIESLPSPLRNLPNLKNLDLS---------------FNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPP 203 (394)
T ss_pred hccccccccc-chhhhhhhhhccccccccccC---------------CchhhhhhhhhhhhhhhhheeccCCc-cccCch
Confidence 6666666665 355554455566777777776 45555555555456777777777655 333322
Q ss_pred CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754 166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (526)
Q Consensus 166 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (526)
.. ....+|++|.+.++........ +..++.+..+.+.++ .+...+. ..+.++.++.|+++++
T Consensus 204 ~~----~~~~~L~~l~~~~N~~~~~~~~---~~~~~~l~~l~l~~n-~~~~~~~----------~~~~l~~l~~L~~s~n 265 (394)
T COG4886 204 EI----ELLSALEELDLSNNSIIELLSS---LSNLKNLSGLELSNN-KLEDLPE----------SIGNLSNLETLDLSNN 265 (394)
T ss_pred hh----hhhhhhhhhhhcCCcceecchh---hhhcccccccccCCc-eeeeccc----------hhccccccceeccccc
Confidence 21 2344577777777643332212 566777777776555 3333222 3455677888887774
Q ss_pred ccccccccCCCccccCCCcceEeeecC
Q 009754 246 PKLKRFCNFTGNIIELPELQHLTIQNC 272 (526)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~L~~L~l~~c 272 (526)
.+++++. +....+++.|++++.
T Consensus 266 -~i~~i~~----~~~~~~l~~L~~s~n 287 (394)
T COG4886 266 -QISSISS----LGSLTNLRELDLSGN 287 (394)
T ss_pred -ccccccc----ccccCccCEEeccCc
Confidence 4555533 446777888888773
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.55 E-value=0.0002 Score=50.99 Aligned_cols=57 Identities=33% Similarity=0.449 Sum_probs=26.1
Q ss_pred ccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 348 NLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 348 ~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
+|++|++++| .++.+|. .+..+++|++|++++ +.++.++... +..+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTT-TTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHH-HcCCCCCCEEeCcCC
Confidence 3444555444 3444442 334445555555553 2444444432 244555555555443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.53 E-value=5.4e-05 Score=76.86 Aligned_cols=193 Identities=17% Similarity=0.205 Sum_probs=133.4
Q ss_pred EeeccCceeecccccCCcCCCceEEecccccccEecccccccccccccccc-ccceeeeccccccccccccCceecCCCc
Q 009754 9 FNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFS-KLKVLILDYLPTLTSFCLENYTLEFPSL 87 (526)
Q Consensus 9 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L 87 (526)
++.........+..+..++.++.|++.+ +.+.+++..... +. +|+.|++.+ ..++..+.. ...+++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~--------~~~nL~~L~l~~-N~i~~l~~~--~~~l~~L 165 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGL--------LKSNLKELDLSD-NKIESLPSP--LRNLPNL 165 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCC-cccccCcccccc--------chhhcccccccc-cchhhhhhh--hhccccc
Confidence 3344333334455666678899999998 588998886654 53 899999886 445554311 3469999
Q ss_pred cEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCC
Q 009754 88 ERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ 167 (526)
Q Consensus 88 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 167 (526)
+.|+++++ .+..++......++|+.|.++ .+.+.+++........|+++.+++.+.+.. ....
T Consensus 166 ~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls---------------~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~ 228 (394)
T COG4886 166 KNLDLSFN-DLSDLPKLLSNLSNLNNLDLS---------------GNKISDLPPEIELLSALEELDLSNNSIIEL-LSSL 228 (394)
T ss_pred cccccCCc-hhhhhhhhhhhhhhhhheecc---------------CCccccCchhhhhhhhhhhhhhcCCcceec-chhh
Confidence 99999998 477777665578889999998 567777877665667799999998852332 1111
Q ss_pred CCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcc
Q 009754 168 ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK 247 (526)
Q Consensus 168 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 247 (526)
..+.++..+.+.++. +..+ ...+..++.++.|+++++ .+++++ ..+.+.+++.|++++...
T Consensus 229 ----~~~~~l~~l~l~~n~-~~~~--~~~~~~l~~l~~L~~s~n-~i~~i~-----------~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 229 ----SNLKNLSGLELSNNK-LEDL--PESIGNLSNLETLDLSNN-QISSIS-----------SLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ----hhcccccccccCCce-eeec--cchhccccccceeccccc-cccccc-----------cccccCccCEEeccCccc
Confidence 446677777765553 3332 122788889999999988 666664 345688999999988644
Q ss_pred cc
Q 009754 248 LK 249 (526)
Q Consensus 248 l~ 249 (526)
..
T Consensus 290 ~~ 291 (394)
T COG4886 290 SN 291 (394)
T ss_pred cc
Confidence 33
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=2.5e-05 Score=83.42 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=88.7
Q ss_pred cCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCc
Q 009754 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI 105 (526)
Q Consensus 26 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 105 (526)
-.+|++|+++|-..+..- -.+++..-||+|++|.+.+.....+. .......||+|..|||+++ +++.+ .|+
T Consensus 121 r~nL~~LdI~G~~~~s~~------W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~T-nI~nl-~GI 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNG------WPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGT-NISNL-SGI 191 (699)
T ss_pred HHhhhhcCccccchhhcc------HHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCC-CccCc-HHH
Confidence 457888888774322111 11233346899999988875544433 1122446899999999988 56766 777
Q ss_pred ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec-cCCCC-CcCCCCCccEEEEe
Q 009754 106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW-HGQAL-PVSFFNNLARLVVD 183 (526)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~-~~~~l~~L~~L~l~ 183 (526)
..+++||.|.+.+ ++-.-..-...+..+++|+.||+|........- ....+ ....+|+|+.|+.+
T Consensus 192 S~LknLq~L~mrn-------------Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 192 SRLKNLQVLSMRN-------------LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred hccccHHHHhccC-------------CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 8888888888872 111111222345578889999988755433210 00000 00236677777776
Q ss_pred cCCCcccCCChHHHhcCCCCCeeee
Q 009754 184 DCTNMSSAIPANLLRCLNNLQWLEV 208 (526)
Q Consensus 184 ~c~~l~~~~~~~~l~~l~~L~~L~l 208 (526)
+...-..+ ....+..-|+|+.+..
T Consensus 259 gTdi~~~~-le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 259 GTDINEEI-LEELLNSHPNLQQIAA 282 (699)
T ss_pred CcchhHHH-HHHHHHhCccHhhhhh
Confidence 65332222 2223344444444443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.37 E-value=0.00048 Score=49.03 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=30.1
Q ss_pred cccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CCCCCCCcceEEeecc
Q 009754 429 KELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEE 489 (526)
Q Consensus 429 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~l~~~ 489 (526)
|+|++|++.++ +++.++.+... .+++|++|++++ .+++.++. .+..+++|+.++++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555555554 55555544332 356666666653 34444443 3445566666666443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.28 E-value=1.7e-05 Score=79.25 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=85.9
Q ss_pred ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (526)
Q Consensus 20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 99 (526)
+++++++..|+.|||+. +.+..+|..++. --|+.|-+.+ .+++..+.. .+..+.|.+|+.+.| .+.
T Consensus 114 p~~i~~L~~lt~l~ls~-NqlS~lp~~lC~---------lpLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~ 179 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSS-NQLSHLPDGLCD---------LPLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQ 179 (722)
T ss_pred chhhhhhhHHHHhhhcc-chhhcCChhhhc---------CcceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhh
Confidence 44666677777777766 366666665553 2355555553 455555554 235666666666666 455
Q ss_pred ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (526)
Q Consensus 100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 179 (526)
.+|..+..+.+|+.|.+. .+...+++.++. .--|..||++.+. +..++... -.|..|++
T Consensus 180 slpsql~~l~slr~l~vr---------------Rn~l~~lp~El~-~LpLi~lDfScNk-is~iPv~f----r~m~~Lq~ 238 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVR---------------RNHLEDLPEELC-SLPLIRLDFSCNK-ISYLPVDF----RKMRHLQV 238 (722)
T ss_pred hchHHhhhHHHHHHHHHh---------------hhhhhhCCHHHh-CCceeeeecccCc-eeecchhh----hhhhhhee
Confidence 566666666666666665 345555666554 3446666666544 44444444 45666666
Q ss_pred EEEecCCCcccCCChH--HHhcCCCCCeeeeccc
Q 009754 180 LVVDDCTNMSSAIPAN--LLRCLNNLQWLEVRNC 211 (526)
Q Consensus 180 L~l~~c~~l~~~~~~~--~l~~l~~L~~L~l~~~ 211 (526)
|.+.+++- .. ||.. +-+...-.++|++.-|
T Consensus 239 l~LenNPL-qS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 239 LQLENNPL-QS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeccCCC-CC-ChHHHHhccceeeeeeecchhc
Confidence 66666542 22 2322 1233344555555555
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.28 E-value=0.00011 Score=67.96 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=83.1
Q ss_pred CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (526)
.+..|+++|++++. ++.+-.+. .-.+.++.|+++.+.. ..+ .. ++.+++|++||+++| .+..+..
T Consensus 282 TWq~LtelDLS~N~-I~~iDESv----KL~Pkir~L~lS~N~i-~~v-~n--La~L~~L~~LDLS~N-~Ls~~~G----- 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESV----KLAPKLRRLILSQNRI-RTV-QN--LAELPQLQLLDLSGN-LLAECVG----- 346 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhh----hhccceeEEeccccce-eee-hh--hhhcccceEeecccc-hhHhhhh-----
Confidence 46778888888876 44433333 3457888888888743 322 22 788889999999887 4544432
Q ss_pred cccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCCCcccc
Q 009754 225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKEPQKLT 297 (526)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~~~~~~ 297 (526)
....+-+.+.|.+.++ .++++. | .+++-+|..|++++ +++..+. .+.++.+.+.++++..++
T Consensus 347 -----wh~KLGNIKtL~La~N-~iE~LS---G-L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 347 -----WHLKLGNIKTLKLAQN-KIETLS---G-LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred -----hHhhhcCEeeeehhhh-hHhhhh---h-hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 2234667788888774 455543 2 66788888888887 4554432 456677777777766655
Q ss_pred c
Q 009754 298 S 298 (526)
Q Consensus 298 ~ 298 (526)
.
T Consensus 416 d 416 (490)
T KOG1259|consen 416 D 416 (490)
T ss_pred h
Confidence 3
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=9.7e-05 Score=79.01 Aligned_cols=108 Identities=17% Similarity=0.276 Sum_probs=64.4
Q ss_pred CCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccc
Q 009754 147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD 226 (526)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 226 (526)
.+|++|++++...+...|... +. ..+|+|++|.+.+-.-..+- ......++|+|..|||+++ +++.+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~T-nI~nl~-------- 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGT-NISNLS-------- 189 (699)
T ss_pred HhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecchh-HHHHhhccCccceeecCCC-CccCcH--------
Confidence 677788887765555555322 22 45778888887764222111 2234667788888888877 555542
Q ss_pred cCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754 227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN 271 (526)
Q Consensus 227 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 271 (526)
+.+.+++|+.|.+.+.. ++....... +..+.+|+.|+++.
T Consensus 190 ---GIS~LknLq~L~mrnLe-~e~~~~l~~-LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 190 ---GISRLKNLQVLSMRNLE-FESYQDLID-LFNLKKLRVLDISR 229 (699)
T ss_pred ---HHhccccHHHHhccCCC-CCchhhHHH-HhcccCCCeeeccc
Confidence 44567777777776653 232222222 55677888888876
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.13 E-value=2.3e-05 Score=78.36 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=100.3
Q ss_pred ccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccc
Q 009754 22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF 101 (526)
Q Consensus 22 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 101 (526)
..+.|-.|+.+.+.. +.+..+|..+.+ +..|.+|+|+. ..+..++... ..--|+.|.++++ +++.+
T Consensus 93 ~~~~f~~Le~liLy~-n~~r~ip~~i~~--------L~~lt~l~ls~-NqlS~lp~~l---C~lpLkvli~sNN-kl~~l 158 (722)
T KOG0532|consen 93 EACAFVSLESLILYH-NCIRTIPEAICN--------LEALTFLDLSS-NQLSHLPDGL---CDLPLKVLIVSNN-KLTSL 158 (722)
T ss_pred HHHHHHHHHHHHHHh-ccceecchhhhh--------hhHHHHhhhcc-chhhcCChhh---hcCcceeEEEecC-ccccC
Confidence 344445555555554 345566655554 55556666654 3344444442 2345777877776 68888
Q ss_pred ccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEE
Q 009754 102 SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV 181 (526)
Q Consensus 102 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 181 (526)
|..+...++|..|+.+ -+.+..++..++.+..|+.|.++.+. +.+++... ..-.|.+|+
T Consensus 159 p~~ig~~~tl~~ld~s---------------~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El-----~~LpLi~lD 217 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVS---------------KNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEEL-----CSLPLIRLD 217 (722)
T ss_pred CcccccchhHHHhhhh---------------hhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHH-----hCCceeeee
Confidence 8888877888888887 45677788888888889988888765 33332222 134578888
Q ss_pred EecCCCcccCCChHHHhcCCCCCeeeecccc
Q 009754 182 VDDCTNMSSAIPANLLRCLNNLQWLEVRNCD 212 (526)
Q Consensus 182 l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 212 (526)
++.+ ++..+ |.+ +.+|..|++|-|++|.
T Consensus 218 fScN-kis~i-Pv~-fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 218 FSCN-KISYL-PVD-FRKMRHLQVLQLENNP 245 (722)
T ss_pred cccC-ceeec-chh-hhhhhhheeeeeccCC
Confidence 8755 66666 444 8899999999998774
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.04 E-value=5.5e-05 Score=71.35 Aligned_cols=43 Identities=23% Similarity=0.067 Sum_probs=23.4
Q ss_pred HhcCCCCCeeeeccccccch-hccccccccccCCCCCCCCccceEecCCCc
Q 009754 197 LRCLNNLQWLEVRNCDSIEE-VLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 197 l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
+..+|.|++++||+|-.-.. +..+.. .+..+..|++|.+.+|.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~-------ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEE-------LLSSCTDLEELYLNNCG 131 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHH-------HHHhccCHHHHhhhcCC
Confidence 44667777888777632111 111110 23346777777777764
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.75 E-value=3.5e-05 Score=79.20 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=79.6
Q ss_pred ccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccC
Q 009754 87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHG 166 (526)
Q Consensus 87 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 166 (526)
|..-+.+++ .+..+-....-++.++.|+++ .+.+.++- .+..++.|++|||+++. +..++.-
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLs---------------hNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l 227 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLS---------------HNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQL 227 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccc---------------hhhhhhhH-HHHhcccccccccccch-hcccccc
Confidence 334444433 344333333346778888888 44555544 56688999999999865 3333221
Q ss_pred CCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754 167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 167 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
. ... .+|+.|.++++ .++.+.. +.++.+|+.||+++| .+.+..++. .+..+..|+.|.+.|++
T Consensus 228 ~---~~g-c~L~~L~lrnN-~l~tL~g---ie~LksL~~LDlsyN-ll~~hseL~--------pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 S---MVG-CKLQLLNLRNN-ALTTLRG---IENLKSLYGLDLSYN-LLSEHSELE--------PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred c---hhh-hhheeeeeccc-HHHhhhh---HHhhhhhhccchhHh-hhhcchhhh--------HHHHHHHHHHHhhcCCc
Confidence 1 122 34999999988 4555433 789999999999998 455544443 45567778888887764
Q ss_pred c
Q 009754 247 K 247 (526)
Q Consensus 247 ~ 247 (526)
-
T Consensus 291 l 291 (1096)
T KOG1859|consen 291 L 291 (1096)
T ss_pred c
Confidence 3
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.63 E-value=0.0024 Score=41.82 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=24.1
Q ss_pred CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhc
Q 009754 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVL 218 (526)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 218 (526)
++|++|+++++ .++++++. ++++++|+.|++++| .+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCCc
Confidence 36777777776 45555432 677777777777777 455443
No 50
>PLN03150 hypothetical protein; Provisional
Probab=96.60 E-value=0.0038 Score=66.97 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=68.8
Q ss_pred HHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccch
Q 009754 137 QKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE 216 (526)
Q Consensus 137 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 216 (526)
..++..+..+++|+.|+++++.-...++... ..+++|+.|++++|.....+ |.. ++++++|++|++++|.....
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N~lsg~i-P~~-l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYNSFNGSI-PES-LGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCCCCCCCC-chH-HhcCCCCCEEECcCCccccc
Confidence 4566677888999999999876222333222 56889999999998543343 443 78999999999999865556
Q ss_pred hccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754 217 VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (526)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 252 (526)
+|... ...+.++..+++.++..+...+
T Consensus 506 iP~~l---------~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 506 VPAAL---------GGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CChHH---------hhccccCceEEecCCccccCCC
Confidence 65411 1123466788888877766543
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.54 E-value=0.00051 Score=65.03 Aligned_cols=250 Identities=17% Similarity=0.102 Sum_probs=110.9
Q ss_pred cceeEEeeccCceeec-----ccccCCcCCCceEEeccccccc----Eeccccccccccccccccccceeeecccccccc
Q 009754 4 LLFYFFNIHTHAHTFA-----YFQVGIPSSLVNLNVSRCDKIE----EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTS 74 (526)
Q Consensus 4 ~~l~~l~~~~~~~~~~-----~~~~~~l~~L~~L~L~~c~~l~----~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 74 (526)
..+..+++++.+--.. -..+..-++|+.-+++.. ... .+|....- ........++|++|+|++...=..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~-l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM-LSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH-HHHHHhcCCceeEeeccccccCcc
Confidence 3455555555442111 124555667777777763 222 23322110 111222456788888776432111
Q ss_pred ccc--cCceecCCCccEEEecCCCCcccc--------------ccCcccCCCeeeEEecccccccceeeeccccchhhHH
Q 009754 75 FCL--ENYTLEFPSLERVSMTHCPNMKTF--------------SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK 138 (526)
Q Consensus 75 ~~~--~~~~~~~~~L~~L~l~~c~~l~~l--------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 138 (526)
... .....++..|++|.+.+|. +... ...+...++|+.+..... ..+ +..-..
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-------rle---n~ga~~ 176 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-------RLE---NGGATA 176 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-------ccc---cccHHH
Confidence 111 1113347788888888874 2211 111223455666655410 000 011122
Q ss_pred hhhhhcCCCCCcEEEeecCCCCceecc-CCCCCcCCCCCccEEEEecCCCccc--CCChHHHhcCCCCCeeeeccccccc
Q 009754 139 CYEEMIGFRDMEYLQLSYFPHLKEIWH-GQALPVSFFNNLARLVVDDCTNMSS--AIPANLLRCLNNLQWLEVRNCDSIE 215 (526)
Q Consensus 139 l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (526)
+-..++.++.|+.+.+..+. +..-.. ........+++|++|++.++.--.. ..-...+..+++|++|.+++|. ++
T Consensus 177 ~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~ 254 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LE 254 (382)
T ss_pred HHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cc
Confidence 33344455677777776654 111000 0000113467777777777642211 0011125566777777777773 33
Q ss_pred hhccccccccccCCCCCCCCccceEecCCCccccccc-cCCCccccCCCcceEeeecC
Q 009754 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQHLTIQNC 272 (526)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~L~~L~l~~c 272 (526)
.-....-... .....|+|+.|.+.++..-.+-. .........|.|+.|.+.+|
T Consensus 255 ~~Ga~a~~~a----l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 255 NEGAIAFVDA----LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred cccHHHHHHH----HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 2110000000 11236777777777652211100 00001334677777777775
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0017 Score=60.20 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=11.5
Q ss_pred ccccccceeeccccccccee
Q 009754 426 NVFKELRYLELYCLPSLTSF 445 (526)
Q Consensus 426 ~~~~~L~~L~l~~c~~l~~~ 445 (526)
..||+|+.|.+.+.|-+..+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCCchhheeeccCCcccccc
Confidence 34666666666666554433
No 53
>PLN03150 hypothetical protein; Provisional
Probab=96.18 E-value=0.0082 Score=64.45 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=33.2
Q ss_pred hhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 344 KAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
..+++|+.|+++++.....+|..+..+++|+.|+++++.-...+|. .+..+++|+.|+++++
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--SLGQLTSLRILNLNGN 500 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--HHhcCCCCCEEECcCC
Confidence 4556666666665543335555556666666666666432223332 2345566666666554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.09 E-value=0.0083 Score=39.26 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=20.4
Q ss_pred cceeEEeeccCceeecccc-cCCcCCCceEEecccccccEec
Q 009754 4 LLFYFFNIHTHAHTFAYFQ-VGIPSSLVNLNVSRCDKIEEII 44 (526)
Q Consensus 4 ~~l~~l~~~~~~~~~~~~~-~~~l~~L~~L~L~~c~~l~~l~ 44 (526)
|+|++|+++...... +++ ++.+++|++|+++++ .+.+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCC-CCCCCc
Confidence 355666666554443 444 666666666666664 455443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.0024 Score=59.32 Aligned_cols=85 Identities=21% Similarity=0.299 Sum_probs=48.8
Q ss_pred CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCC-CCCCCCCEEeeccccCccccccchhhhhcc
Q 009754 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPS-WHLENLEALEVSKCHGLINLLTFSTSESLV 397 (526)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (526)
+.++++++.+. .+.+ |.+.+....++|.|+.|+++.+ .+.+..... ....+|+.|-+.+. .+......+....+|
T Consensus 71 ~~v~elDL~~N-~iSd-WseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 71 TDVKELDLTGN-LISD-WSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhcccc-hhcc-HHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcch
Confidence 67777887763 2333 3344444577888888888643 343322222 24456777777662 333333333456677
Q ss_pred CCceEEEecc
Q 009754 398 NLGRMMIADC 407 (526)
Q Consensus 398 ~L~~L~i~~c 407 (526)
.++.|+++..
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 7788877764
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.75 E-value=0.021 Score=50.27 Aligned_cols=88 Identities=27% Similarity=0.339 Sum_probs=61.2
Q ss_pred CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (526)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 252 (526)
.++.|.+|.+.++ +++.+ ...+...+|+|+.|.+.+| ++..+.++. .+..+|+|++|.+-+.+. +...
T Consensus 62 ~l~rL~tLll~nN-rIt~I-~p~L~~~~p~l~~L~LtnN-si~~l~dl~--------pLa~~p~L~~Ltll~Npv-~~k~ 129 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRI-DPDLDTFLPNLKTLILTNN-SIQELGDLD--------PLASCPKLEYLTLLGNPV-EHKK 129 (233)
T ss_pred CccccceEEecCC-cceee-ccchhhhccccceEEecCc-chhhhhhcc--------hhccCCccceeeecCCch-hccc
Confidence 4678888888877 45555 3344566788999999887 677777766 667789999998877543 2222
Q ss_pred cCC-CccccCCCcceEeeecC
Q 009754 253 NFT-GNIIELPELQHLTIQNC 272 (526)
Q Consensus 253 ~~~-~~~~~~~~L~~L~l~~c 272 (526)
... -.+..+|+|+.|+++..
T Consensus 130 ~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CceeEEEEecCcceEeehhhh
Confidence 111 12567899999998874
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.00031 Score=64.37 Aligned_cols=106 Identities=19% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccC
Q 009754 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVN 398 (526)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 398 (526)
.+.++|..++| .+.+|... ..++.|+.|.++-+ +++.+ ..+..+++|++|+++. +.+.++-...++.++|+
T Consensus 19 ~~vkKLNcwg~-~L~DIsic-----~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISIC-----EKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCC-CccHHHHH-----HhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCch
Confidence 46678888886 45555332 67888888888764 45555 4567788888888887 56777766566788888
Q ss_pred CceEEEecccCcceeeccCCcccccccccccccceeec
Q 009754 399 LGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLEL 436 (526)
Q Consensus 399 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 436 (526)
|+.|.+...+-...-+. .-...-+..+|+|+.|+=
T Consensus 90 Lr~LWL~ENPCc~~ag~---nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQ---NYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhhHhhccCCcccccch---hHHHHHHHHcccchhccC
Confidence 88888876553221111 001111245677777653
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.34 E-value=0.0011 Score=68.67 Aligned_cols=104 Identities=22% Similarity=0.194 Sum_probs=71.3
Q ss_pred CCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-----CcccceeeecCCCCccccchhhhhh
Q 009754 230 RGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-----SNSVVHVTTDNKEPQKLTSEENFLL 304 (526)
Q Consensus 230 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~~~~~~~~~~ 304 (526)
.+..++.|++|+++++ ++.+... +..++.|++|++++ +.+...+ ...|+.|.++++...++-.+++
T Consensus 182 SLqll~ale~LnLshN-k~~~v~~----Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~--- 252 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVDN----LRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIEN--- 252 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhHH----HHhccccccccccc-chhccccccchhhhhheeeeecccHHHhhhhHHh---
Confidence 5566788999999885 4454432 67899999999998 5666655 3457788888888777665554
Q ss_pred ccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCc
Q 009754 305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS 358 (526)
Q Consensus 305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~ 358 (526)
+.+|+.|+++.. -+..... +..++.+..|+.|.+.|++
T Consensus 253 -------------LksL~~LDlsyN-ll~~hse--L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 -------------LKSLYGLDLSYN-LLSEHSE--LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -------------hhhhhccchhHh-hhhcchh--hhHHHHHHHHHHHhhcCCc
Confidence 478899998862 1222111 1122677888888888876
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.0053 Score=56.13 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=52.7
Q ss_pred CCCCccEEEEecC--CCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccc
Q 009754 173 FFNNLARLVVDDC--TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR 250 (526)
Q Consensus 173 ~l~~L~~L~l~~c--~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 250 (526)
.+++|++|.++.+ .....+... ...+|+|+++.+++| ++..+..+. .+..+.+|..|++.+|....
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N-ki~~lstl~--------pl~~l~nL~~Ldl~n~~~~~- 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN-KIKDLSTLR--------PLKELENLKSLDLFNCSVTN- 130 (260)
T ss_pred CcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC-ccccccccc--------hhhhhcchhhhhcccCCccc-
Confidence 4778888888877 333333222 556688888888887 444433322 45566777778877775432
Q ss_pred cccC-CCccccCCCcceEeeecCC
Q 009754 251 FCNF-TGNIIELPELQHLTIQNCP 273 (526)
Q Consensus 251 ~~~~-~~~~~~~~~L~~L~l~~c~ 273 (526)
.... ...+..+|+|+.|+-.++.
T Consensus 131 l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 131 LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccHHHHHHHHhhhhccccccccC
Confidence 2111 1124556777777766653
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.00061 Score=62.51 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=39.4
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 253 (526)
+.+.++|+.++| .+.++ .+...|+.|++|.|+-| .++.+. .+..+++|+.|.+..+ .+.++..
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~-----------pl~rCtrLkElYLRkN-~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA-----------PLQRCTRLKELYLRKN-CIESLDE 80 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch-----------hHHHHHHHHHHHHHhc-ccccHHH
Confidence 345555555555 23322 23555666666666554 333332 2234555665555442 2333322
Q ss_pred CCCccccCCCcceEeeecCCC
Q 009754 254 FTGNIIELPELQHLTIQNCPD 274 (526)
Q Consensus 254 ~~~~~~~~~~L~~L~l~~c~~ 274 (526)
..- ..++|+|+.|.+..++.
T Consensus 81 L~Y-LknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 81 LEY-LKNLPSLRTLWLDENPC 100 (388)
T ss_pred HHH-HhcCchhhhHhhccCCc
Confidence 222 34556666666655443
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.0016 Score=57.12 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=20.9
Q ss_pred CCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcce
Q 009754 368 WHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQ 412 (526)
Q Consensus 368 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 412 (526)
..+++++.|.+.+|..+.+...+.+..-.++|+.|+|++|+.+++
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 333444555555555444443332333344555555555554443
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.86 E-value=0.0044 Score=63.26 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=80.5
Q ss_pred ccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhH
Q 009754 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (526)
Q Consensus 58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 137 (526)
+.+|+.|.+.+. .++..... ...+++|++|+++++ .++.+ .++..++.|+.|++.+ +.+.
T Consensus 94 ~~~l~~l~l~~n-~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~---------------N~i~ 153 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KIEKIENL--LSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSG---------------NLIS 153 (414)
T ss_pred ccceeeeecccc-chhhcccc--hhhhhcchheecccc-ccccc-cchhhccchhhheecc---------------Ccch
Confidence 556666665542 22222211 234677777777766 34444 3444556667777662 2332
Q ss_pred HhhhhhcCCCCCcEEEeecCCCCceeccC-CCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccch
Q 009754 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHG-QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE 216 (526)
Q Consensus 138 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 216 (526)
.+.. +..+.+|+.++++++. +..+... . ..+.+++.+.+.++... .+-. +..+..+..+++..+ .+..
T Consensus 154 ~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~----~~~~~l~~l~l~~n~i~-~i~~---~~~~~~l~~~~l~~n-~i~~ 222 (414)
T KOG0531|consen 154 DISG-LESLKSLKLLDLSYNR-IVDIENDEL----SELISLEELDLGGNSIR-EIEG---LDLLKKLVLLSLLDN-KISK 222 (414)
T ss_pred hccC-CccchhhhcccCCcch-hhhhhhhhh----hhccchHHHhccCCchh-cccc---hHHHHHHHHhhcccc-ccee
Confidence 2221 1126677777777665 2222110 1 34667777777766322 2212 233333444444444 2222
Q ss_pred hccccccccccCCCCCCCCc--cceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754 217 VLHLEEQNADKEHRGPLFPK--LYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN 271 (526)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 271 (526)
+- ....+.. |+.+.+.+.+ +...+ .+ +..+..+..|++.+
T Consensus 223 ~~-----------~l~~~~~~~L~~l~l~~n~-i~~~~--~~-~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 223 LE-----------GLNELVMLHLRELYLSGNR-ISRSP--EG-LENLKNLPVLDLSS 264 (414)
T ss_pred cc-----------CcccchhHHHHHHhcccCc-ccccc--cc-ccccccccccchhh
Confidence 21 1122232 6777777643 23221 11 44666777777766
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=0.0047 Score=54.27 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc
Q 009754 232 PLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI 279 (526)
Q Consensus 232 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 279 (526)
..+++++.|.+-+|..+.++....- ..-.++|+.|++++|+++++-.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred hccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhH
Confidence 3444555555555554444432211 1234556666666665555543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.10 E-value=0.024 Score=51.94 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=59.9
Q ss_pred CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc--cccchhccccccccccCCCCCCCCccceEecCCCcccc
Q 009754 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC--DSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLK 249 (526)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 249 (526)
..+.+|+.|++.++. ++.+.. +..+|+|++|.++.+ +....+.. ....+|+|+++.+++. .+.
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~v----------l~e~~P~l~~l~ls~N-ki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTN---FPKLPKLKKLELSDNYRRVSGGLEV----------LAEKAPNLKVLNLSGN-KIK 104 (260)
T ss_pred ccccchhhhhhhccc-eeeccc---CCCcchhhhhcccCCccccccccee----------hhhhCCceeEEeecCC-ccc
Confidence 346777777777763 443323 678899999999988 44444332 3445699999999985 455
Q ss_pred ccccCCCccccCCCcceEeeecCC
Q 009754 250 RFCNFTGNIIELPELQHLTIQNCP 273 (526)
Q Consensus 250 ~~~~~~~~~~~~~~L~~L~l~~c~ 273 (526)
.+..... ...+++|..|++.+|.
T Consensus 105 ~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 105 DLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred cccccch-hhhhcchhhhhcccCC
Confidence 4444444 6788899999999985
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.88 E-value=0.081 Score=28.68 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.0
Q ss_pred CCceEEecccccccEecccccc
Q 009754 28 SLVNLNVSRCDKIEEIIRHVGE 49 (526)
Q Consensus 28 ~L~~L~L~~c~~l~~l~~~~~~ 49 (526)
+|++|||++| .++.+|..+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5899999998 78899886543
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.33 E-value=0.09 Score=26.46 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=10.3
Q ss_pred CCCceEEecccccccEec
Q 009754 27 SSLVNLNVSRCDKIEEII 44 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~ 44 (526)
++|++|+|++| .++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 47888999887 477665
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.31 E-value=0.28 Score=43.39 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=48.4
Q ss_pred ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccc--cccccccccCceecCCCccEEEecCCCC
Q 009754 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENYTLEFPSLERVSMTHCPN 97 (526)
Q Consensus 20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 97 (526)
+..+..++.|.+|.+.+ +.|..|...+.. .+++|.+|.+.+. +.+.++.. ...||.|++|.+-+++-
T Consensus 57 l~~lp~l~rL~tLll~n-NrIt~I~p~L~~-------~~p~l~~L~LtnNsi~~l~dl~p---La~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNN-NRITRIDPDLDT-------FLPNLKTLILTNNSIQELGDLDP---LASCPKLEYLTLLGNPV 125 (233)
T ss_pred cccCCCccccceEEecC-Ccceeeccchhh-------hccccceEEecCcchhhhhhcch---hccCCccceeeecCCch
Confidence 45566677777777777 467777555443 3567777777652 22333322 23577777777766653
Q ss_pred ccc---cccCcccCCCeeeEEec
Q 009754 98 MKT---FSHGILSTPKLHKVQVT 117 (526)
Q Consensus 98 l~~---l~~~~~~~~~L~~L~l~ 117 (526)
-.. -..-+..+++|+.|++.
T Consensus 126 ~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 126 EHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hcccCceeEEEEecCcceEeehh
Confidence 221 11122345666666665
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.22 E-value=0.042 Score=56.11 Aligned_cols=107 Identities=20% Similarity=0.111 Sum_probs=55.5
Q ss_pred hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccc
Q 009754 141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL 220 (526)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 220 (526)
+.+..+.+|+.+++.+.. ++.+.... ..+++|++|+++++ .++.+.+ +..++.|+.|++++| .+..+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~-i~~i~~~l----~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N-~i~~~~~- 157 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK-IEKIENLL----SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGN-LISDISG- 157 (414)
T ss_pred cccccccceeeeeccccc-hhhcccch----hhhhcchheecccc-ccccccc---hhhccchhhheeccC-cchhccC-
Confidence 334455666666665544 32221111 34666777777666 3444433 556666777777666 4444432
Q ss_pred cccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754 221 EEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN 271 (526)
Q Consensus 221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 271 (526)
...++.|+.++++++. +..+... . ...+.+++.+.+.+
T Consensus 158 ----------~~~l~~L~~l~l~~n~-i~~ie~~-~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 158 ----------LESLKSLKLLDLSYNR-IVDIEND-E-LSELISLEELDLGG 195 (414)
T ss_pred ----------CccchhhhcccCCcch-hhhhhhh-h-hhhccchHHHhccC
Confidence 2235666666666642 2333210 0 13566666666666
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.52 E-value=4.9 Score=32.94 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=4.3
Q ss_pred HhcCCCCCeeeec
Q 009754 197 LRCLNNLQWLEVR 209 (526)
Q Consensus 197 l~~l~~L~~L~l~ 209 (526)
+..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3444444444443
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.38 E-value=0.068 Score=44.16 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=42.3
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
...|++.+++++ .++.+ |..+...+|.++.|+++++ .+.++|+ .+..++.|+.|+++.++
T Consensus 52 ~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPe----------E~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANN-EISDVPE----------ELAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchh-hhhhchH----------HHhhhHHhhhcccccCc
Confidence 456777788776 45554 5665667778888888776 6777775 45667888888887754
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.79 E-value=5.6 Score=32.54 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=33.0
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESL 396 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 396 (526)
+++|+.+.+.. .++.+....+ ..+++|+.+.+.+ .+..++. .+..+++++.+.+.+ .+..++.. ....+
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F---~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~-~F~~~ 80 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAF---SNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDN-AFSNC 80 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTT---TT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TT-TTTT-
T ss_pred CCCCCEEEECC--CeeEeChhhc---ccccccccccccc--cccccceeeeecccccccccccc--cccccccc-ccccc
Confidence 35666666653 3555655544 5555666666654 2444432 234444666666644 33333332 22445
Q ss_pred cCCceEEEe
Q 009754 397 VNLGRMMIA 405 (526)
Q Consensus 397 ~~L~~L~i~ 405 (526)
++|+.+.+.
T Consensus 81 ~~l~~i~~~ 89 (129)
T PF13306_consen 81 TNLKNIDIP 89 (129)
T ss_dssp TTECEEEET
T ss_pred ccccccccC
Confidence 566666653
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.14 E-value=0.58 Score=26.46 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.0
Q ss_pred CCCccEEEEcCCCCcee
Q 009754 454 FPSLKQVVVRQCPKMKI 470 (526)
Q Consensus 454 ~~~L~~L~l~~C~~l~~ 470 (526)
||+|++|++.+|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57788888888887763
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=83.67 E-value=0.077 Score=43.85 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=39.2
Q ss_pred CCccEEEecCCCCccccccCccc-CCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCC
Q 009754 85 PSLERVSMTHCPNMKTFSHGILS-TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP 158 (526)
Q Consensus 85 ~~L~~L~l~~c~~l~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 158 (526)
..|...+++++ .++++|..+.. .+.++.+++. ++.+.++|..+..++.|+.|+++.++
T Consensus 53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~---------------~neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLA---------------NNEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred ceEEEEecccc-hhhhCCHHHhhccchhhhhhcc---------------hhhhhhchHHHhhhHHhhhcccccCc
Confidence 34555566666 46666655543 3467777776 67777888777778888888887766
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.01 E-value=0.29 Score=45.37 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=34.7
Q ss_pred cccceeEeccCcCcc----c-cCCCCCCCCCCCEEeeccccCccccccch---hhhhccCCceEEEecc
Q 009754 347 ANLESLEISECSKLQ----K-LVPPSWHLENLEALEVSKCHGLINLLTFS---TSESLVNLGRMMIADC 407 (526)
Q Consensus 347 ~~L~~L~l~~c~~l~----~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~l~~L~~L~i~~c 407 (526)
..|+.+.+..+..-. . +...+.++++|+.||+... .++...... ..+.++.|+.|.+.+|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch
Confidence 467777776543111 1 1134567788888888873 333332211 2245667888888888
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=75.00 E-value=1.7 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=17.2
Q ss_pred cCCCceEEecccccccEecccc
Q 009754 26 PSSLVNLNVSRCDKIEEIIRHV 47 (526)
Q Consensus 26 l~~L~~L~L~~c~~l~~l~~~~ 47 (526)
+++|++|+|+++ .++.+|..+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 478999999995 899998753
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=75.00 E-value=1.7 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=17.2
Q ss_pred cCCCceEEecccccccEecccc
Q 009754 26 PSSLVNLNVSRCDKIEEIIRHV 47 (526)
Q Consensus 26 l~~L~~L~L~~c~~l~~l~~~~ 47 (526)
+++|++|+|+++ .++.+|..+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 478999999995 899998753
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=51.55 E-value=5.1 Score=37.46 Aligned_cols=62 Identities=19% Similarity=0.084 Sum_probs=28.9
Q ss_pred hhhcccceeEeccCcCcc-----ccCCCCCCCCCCCEEeeccccCccccccchhhh-----hccCCceEEEecc
Q 009754 344 KAFANLESLEISECSKLQ-----KLVPPSWHLENLEALEVSKCHGLINLLTFSTSE-----SLVNLGRMMIADC 407 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-----~l~~L~~L~i~~c 407 (526)
..+.+|+.|++.++. ++ .+...+...+.|+.|.+..| -+..-...++.. ..|+|..|...+.
T Consensus 211 ~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 211 FYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 445556666665532 11 11112233355788888877 233323222222 2356666655443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=42.55 E-value=17 Score=19.69 Aligned_cols=13 Identities=31% Similarity=0.343 Sum_probs=6.8
Q ss_pred CCCCCeeeecccc
Q 009754 200 LNNLQWLEVRNCD 212 (526)
Q Consensus 200 l~~L~~L~l~~~~ 212 (526)
+++|++|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3567777777764
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.00 E-value=36 Score=19.29 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=12.9
Q ss_pred cCCCceEEecccccccEec
Q 009754 26 PSSLVNLNVSRCDKIEEII 44 (526)
Q Consensus 26 l~~L~~L~L~~c~~l~~l~ 44 (526)
+++|+.|+++++ .|+.+.
T Consensus 1 L~~L~~L~L~~N-kI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQN-KIKKIE 18 (26)
T ss_pred CCccCEEECCCC-ccceec
Confidence 467888999884 666653
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=32.59 E-value=24 Score=20.02 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.5
Q ss_pred CCCceEEecccccccEecc
Q 009754 27 SSLVNLNVSRCDKIEEIIR 45 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~ 45 (526)
++|+.|++++ +++.++|.
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4688999998 47888886
Done!