Query 009754
Match_columns 526
No_of_seqs 202 out of 2364
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.1E-28 1.1E-32 266.4 22.7 232 139-407 310-548 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-27 4.6E-32 261.3 24.4 417 3-493 99-552 (768)
3 4eco_A Uncharacterized protein 99.9 1.6E-26 5.3E-31 247.3 25.0 353 81-492 202-600 (636)
4 3t6q_A CD180 antigen; protein- 99.9 3.5E-25 1.2E-29 236.3 35.4 273 176-491 255-535 (606)
5 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-25 3.6E-30 240.3 28.7 160 315-492 395-558 (606)
6 3t6q_A CD180 antigen; protein- 99.9 9.4E-25 3.2E-29 233.0 32.0 234 231-495 274-516 (606)
7 4ecn_A Leucine-rich repeat pro 99.9 2.3E-25 7.8E-30 242.9 26.9 348 81-492 444-840 (876)
8 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-25 7.5E-30 237.9 26.1 427 3-492 55-534 (606)
9 2z63_A TOLL-like receptor 4, v 99.9 1.6E-24 5.3E-29 229.5 30.5 249 197-494 278-533 (570)
10 4eco_A Uncharacterized protein 99.9 2.6E-25 9E-30 237.8 20.2 360 37-469 192-601 (636)
11 2z63_A TOLL-like receptor 4, v 99.9 1.3E-24 4.6E-29 230.1 25.3 227 232-494 279-509 (570)
12 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-25 2.8E-29 229.0 21.3 410 2-492 19-481 (520)
13 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-24 1.5E-28 225.0 26.9 420 2-492 24-510 (549)
14 3j0a_A TOLL-like receptor 5; m 99.9 2.9E-23 1E-27 229.3 31.5 131 3-158 23-159 (844)
15 4ecn_A Leucine-rich repeat pro 99.9 1.9E-24 6.6E-29 235.6 19.1 362 20-470 441-842 (876)
16 1ziw_A TOLL-like receptor 3; i 99.9 9.8E-23 3.3E-27 220.4 32.4 452 3-486 72-591 (680)
17 1ziw_A TOLL-like receptor 3; i 99.9 6.4E-23 2.2E-27 221.8 30.6 438 3-492 24-549 (680)
18 2z81_A CD282 antigen, TOLL-lik 99.9 3E-23 1E-27 218.7 22.5 429 4-493 5-487 (549)
19 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-21 7.5E-26 214.3 35.1 198 7-246 7-215 (844)
20 1jl5_A Outer protein YOPM; leu 99.9 3E-23 1E-27 212.4 18.6 234 86-407 72-307 (454)
21 1o6v_A Internalin A; bacterial 99.9 1.9E-22 6.6E-27 207.9 24.4 348 3-473 45-392 (466)
22 1o6v_A Internalin A; bacterial 99.9 2.6E-22 9E-27 206.9 24.8 348 24-494 43-390 (466)
23 3v47_A TOLL-like receptor 5B a 99.9 1.5E-21 5.3E-26 200.6 26.2 82 26-117 29-111 (455)
24 1jl5_A Outer protein YOPM; leu 99.9 6.2E-22 2.1E-26 202.7 20.7 321 4-407 11-347 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-21 5E-26 206.2 23.8 218 234-492 275-510 (562)
26 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-21 5.2E-26 199.9 22.5 318 20-469 35-352 (457)
27 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-22 9.2E-27 209.9 16.6 400 7-493 3-458 (520)
28 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-21 7.1E-26 199.0 22.7 343 3-475 41-394 (457)
29 4fmz_A Internalin; leucine ric 99.9 1.1E-21 3.7E-26 194.3 19.7 309 19-440 36-344 (347)
30 3v47_A TOLL-like receptor 5B a 99.9 7.3E-21 2.5E-25 195.6 25.8 376 31-495 14-411 (455)
31 4fmz_A Internalin; leucine ric 99.9 1.2E-20 4E-25 186.9 21.4 302 3-408 43-344 (347)
32 3o6n_A APL1; leucine-rich repe 99.9 8.4E-21 2.9E-25 191.0 19.7 305 25-440 43-350 (390)
33 3o6n_A APL1; leucine-rich repe 99.9 3.5E-20 1.2E-24 186.5 24.0 305 58-466 44-350 (390)
34 2id5_A Lingo-1, leucine rich r 99.9 8.6E-20 2.9E-24 188.8 26.7 298 25-408 30-331 (477)
35 4g8a_A TOLL-like receptor 4; l 99.8 4E-19 1.4E-23 190.3 30.1 164 315-492 416-580 (635)
36 3ogk_B Coronatine-insensitive 99.8 4.1E-23 1.4E-27 219.7 -1.4 416 23-493 69-527 (592)
37 3oja_B Anopheles plasmodium-re 99.8 4.2E-20 1.4E-24 196.3 19.8 306 25-440 49-356 (597)
38 2id5_A Lingo-1, leucine rich r 99.8 1.5E-19 5.1E-24 186.9 23.5 280 142-491 51-332 (477)
39 3oja_B Anopheles plasmodium-re 99.8 2.8E-19 9.7E-24 189.9 25.0 305 58-466 50-356 (597)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.2E-19 7.6E-24 189.5 23.2 102 2-118 50-155 (562)
41 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-18 4.4E-23 186.3 27.2 160 318-494 396-557 (635)
42 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.6E-26 208.0 0.4 419 3-486 72-545 (592)
43 2p1m_B Transport inhibitor res 99.8 2.1E-21 7.1E-26 206.5 1.7 206 233-467 287-518 (594)
44 4fcg_A Uncharacterized protein 99.8 1.3E-18 4.6E-23 170.3 15.1 206 26-279 80-294 (328)
45 4fcg_A Uncharacterized protein 99.8 1.6E-18 5.5E-23 169.8 15.1 187 172-406 124-310 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-17 4.1E-22 164.1 21.0 226 85-389 54-281 (332)
47 2p1m_B Transport inhibitor res 99.8 2.8E-20 9.5E-25 197.9 1.6 383 3-464 104-540 (594)
48 1xku_A Decorin; proteoglycan, 99.8 8.4E-17 2.9E-21 157.9 24.3 187 141-389 94-280 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-17 1.3E-21 160.6 19.9 289 27-408 33-331 (332)
50 1xku_A Decorin; proteoglycan, 99.7 6.7E-17 2.3E-21 158.6 21.1 291 26-407 30-329 (330)
51 1ogq_A PGIP-2, polygalacturona 99.7 4E-17 1.4E-21 158.8 14.8 253 27-387 50-307 (313)
52 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-19 4E-24 186.8 -7.1 293 138-486 104-434 (461)
53 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-15 3.7E-20 161.4 22.9 234 175-491 61-296 (622)
54 3g06_A SSPH2 (leucine-rich rep 99.7 7.6E-16 2.6E-20 162.5 21.2 256 27-408 40-295 (622)
55 1ogq_A PGIP-2, polygalacturona 99.7 4.6E-17 1.6E-21 158.4 10.4 236 141-447 70-309 (313)
56 2z80_A TOLL-like receptor 2, v 99.7 3.3E-16 1.1E-20 155.2 15.6 206 25-278 29-237 (353)
57 2z80_A TOLL-like receptor 2, v 99.7 5.3E-16 1.8E-20 153.6 15.8 259 174-493 51-315 (353)
58 3zyi_A Leucine-rich repeat-con 99.7 3.9E-15 1.3E-19 152.6 20.6 207 142-407 94-300 (452)
59 3zyj_A Leucine-rich repeat-con 99.7 4.1E-15 1.4E-19 151.8 20.5 205 143-407 84-289 (440)
60 3zyi_A Leucine-rich repeat-con 99.7 4.6E-15 1.6E-19 152.0 20.9 36 174-211 98-133 (452)
61 2z66_A Variable lymphocyte rec 99.7 8.9E-16 3.1E-20 148.8 14.6 182 145-382 76-259 (306)
62 3zyj_A Leucine-rich repeat-con 99.7 5E-15 1.7E-19 151.2 20.5 235 136-440 55-290 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.6 3.4E-16 1.2E-20 152.6 8.0 245 144-470 31-277 (317)
64 2z66_A Variable lymphocyte rec 99.6 6E-15 2.1E-19 143.0 16.3 182 174-407 27-209 (306)
65 3o53_A Protein LRIM1, AGAP0063 99.6 1.4E-15 4.7E-20 148.3 11.2 130 347-492 120-250 (317)
66 1z7x_W Ribonuclease inhibitor; 99.6 3.9E-17 1.3E-21 167.9 0.0 383 2-440 1-438 (461)
67 1ozn_A Reticulon 4 receptor; N 99.6 6.8E-15 2.3E-19 141.0 14.4 183 173-408 54-236 (285)
68 4ay9_X Follicle-stimulating ho 99.6 2.7E-14 9.2E-19 141.1 19.0 226 175-464 30-255 (350)
69 2xwt_C Thyrotropin receptor; s 99.6 2.4E-14 8.1E-19 133.5 14.9 83 176-271 32-114 (239)
70 1ozn_A Reticulon 4 receptor; N 99.6 4.1E-14 1.4E-18 135.6 16.6 184 143-383 52-237 (285)
71 3oja_A Leucine-rich immune mol 99.6 8.1E-15 2.8E-19 151.3 11.0 237 145-463 32-270 (487)
72 3oja_A Leucine-rich immune mol 99.5 2.9E-14 9.9E-19 147.1 13.6 236 173-486 32-269 (487)
73 2ast_B S-phase kinase-associat 99.5 7.6E-15 2.6E-19 144.2 8.5 204 27-273 47-258 (336)
74 2xwt_C Thyrotropin receptor; s 99.5 7.4E-14 2.5E-18 130.1 14.1 209 17-274 23-238 (239)
75 4ay9_X Follicle-stimulating ho 99.5 3.3E-13 1.1E-17 133.3 18.0 213 135-406 41-255 (350)
76 2ast_B S-phase kinase-associat 99.5 9.9E-15 3.4E-19 143.4 6.7 227 6-272 49-282 (336)
77 1wwl_A Monocyte differentiatio 99.5 3.3E-15 1.1E-19 145.2 3.2 258 22-381 38-306 (312)
78 1h6u_A Internalin H; cell adhe 99.5 8.5E-14 2.9E-18 134.9 11.8 199 20-278 34-232 (308)
79 1h6u_A Internalin H; cell adhe 99.5 1.4E-13 4.9E-18 133.3 12.4 192 3-250 40-231 (308)
80 1wwl_A Monocyte differentiatio 99.5 1.9E-14 6.4E-19 139.8 4.0 204 145-407 93-306 (312)
81 1p9a_G Platelet glycoprotein I 99.5 1.5E-12 5.2E-17 124.8 17.1 198 145-408 8-206 (290)
82 2o6q_A Variable lymphocyte rec 99.4 2.6E-12 8.7E-17 122.0 18.0 199 148-408 17-216 (270)
83 1p9a_G Platelet glycoprotein I 99.4 1.9E-12 6.5E-17 124.1 15.7 201 23-273 6-206 (290)
84 3rfs_A Internalin B, repeat mo 99.4 1.9E-12 6.3E-17 123.1 14.8 175 174-407 40-215 (272)
85 2z62_A TOLL-like receptor 4, v 99.4 4.3E-12 1.5E-16 120.8 17.3 180 173-407 50-234 (276)
86 2z62_A TOLL-like receptor 4, v 99.4 1.6E-11 5.6E-16 116.8 18.9 135 344-492 97-237 (276)
87 3rfs_A Internalin B, repeat mo 99.4 3.6E-12 1.2E-16 121.1 12.7 153 83-272 39-191 (272)
88 2o6q_A Variable lymphocyte rec 99.4 1.4E-11 4.7E-16 116.9 16.0 157 173-382 59-216 (270)
89 4ezg_A Putative uncharacterize 99.3 3.3E-11 1.1E-15 108.4 12.4 152 23-211 40-191 (197)
90 1h6t_A Internalin B; cell adhe 99.2 1.2E-11 4.1E-16 118.6 9.2 150 83-278 66-215 (291)
91 2ca6_A RAN GTPase-activating p 99.2 1.5E-12 5.2E-17 130.3 2.9 19 139-157 24-42 (386)
92 4glp_A Monocyte differentiatio 99.2 1.4E-11 4.9E-16 119.3 9.3 205 58-294 90-307 (310)
93 1h6t_A Internalin B; cell adhe 99.2 4E-11 1.4E-15 114.9 11.4 174 19-246 38-211 (291)
94 1m9s_A Internalin B; cell inva 99.2 2E-11 6.8E-16 128.6 10.0 172 20-245 36-207 (605)
95 3m19_A Variable lymphocyte rec 99.2 2.3E-10 8E-15 107.1 15.5 155 174-381 34-189 (251)
96 4glp_A Monocyte differentiatio 99.2 5.2E-11 1.8E-15 115.3 10.4 188 83-295 89-286 (310)
97 4ezg_A Putative uncharacterize 99.2 8.4E-11 2.9E-15 105.7 11.0 80 173-272 42-122 (197)
98 3m19_A Variable lymphocyte rec 99.2 3.3E-10 1.1E-14 106.0 14.9 176 175-408 14-190 (251)
99 2ca6_A RAN GTPase-activating p 99.2 7.7E-12 2.6E-16 125.2 3.4 242 21-295 26-317 (386)
100 1m9s_A Internalin B; cell inva 99.1 1.5E-10 5E-15 122.0 12.1 168 3-213 42-209 (605)
101 3cvr_A Invasion plasmid antige 99.1 1E-09 3.5E-14 114.4 13.8 192 27-283 59-250 (571)
102 1xeu_A Internalin C; cellular 99.0 6.1E-10 2.1E-14 104.9 9.4 167 25-246 17-183 (263)
103 3goz_A Leucine-rich repeat-con 99.0 2.8E-11 9.7E-16 119.9 0.1 85 320-407 168-263 (362)
104 3goz_A Leucine-rich repeat-con 99.0 4.8E-11 1.6E-15 118.3 1.6 61 319-381 196-263 (362)
105 3cvr_A Invasion plasmid antige 99.0 1.6E-09 5.3E-14 113.0 12.2 177 5-249 60-244 (571)
106 1xeu_A Internalin C; cellular 99.0 1.7E-09 6E-14 101.8 11.0 170 58-278 18-187 (263)
107 1dce_A Protein (RAB geranylger 99.0 1.3E-11 4.6E-16 129.1 -4.6 199 23-269 345-567 (567)
108 2o6s_A Variable lymphocyte rec 99.0 2.8E-09 9.5E-14 96.6 11.3 36 174-211 51-86 (208)
109 2o6s_A Variable lymphocyte rec 98.9 8E-09 2.7E-13 93.5 13.2 61 344-407 97-158 (208)
110 2v70_A SLIT-2, SLIT homolog 2 98.9 1E-08 3.5E-13 93.7 13.3 77 178-271 14-90 (220)
111 1dce_A Protein (RAB geranylger 98.9 1.2E-11 4E-16 129.6 -8.0 186 58-279 348-549 (567)
112 3e6j_A Variable lymphocyte rec 98.9 1.2E-08 3.9E-13 94.0 13.0 149 176-381 20-169 (229)
113 2v9t_B SLIT homolog 2 protein 98.9 1.7E-08 5.7E-13 92.3 13.4 37 232-271 53-89 (220)
114 2v70_A SLIT-2, SLIT homolog 2 98.9 9.6E-09 3.3E-13 93.9 11.4 75 30-117 14-89 (220)
115 3sb4_A Hypothetical leucine ri 98.9 1.3E-08 4.6E-13 99.1 13.1 37 4-41 25-62 (329)
116 2xot_A Amphoterin-induced prot 98.8 2.5E-08 8.6E-13 98.5 13.4 173 178-408 21-200 (361)
117 2xot_A Amphoterin-induced prot 98.8 2E-08 6.8E-13 99.3 12.6 176 150-382 21-200 (361)
118 2v9t_B SLIT homolog 2 protein 98.8 1.7E-08 6E-13 92.2 11.1 61 174-246 103-163 (220)
119 2ell_A Acidic leucine-rich nuc 98.8 4.4E-09 1.5E-13 91.7 6.5 136 24-218 21-163 (168)
120 3e6j_A Variable lymphocyte rec 98.8 4.4E-08 1.5E-12 90.1 12.9 150 321-492 21-172 (229)
121 3sb4_A Hypothetical leucine ri 98.7 6.7E-08 2.3E-12 94.1 13.2 101 370-485 225-327 (329)
122 2ell_A Acidic leucine-rich nuc 98.7 2E-08 6.7E-13 87.5 7.5 128 3-158 23-158 (168)
123 2je0_A Acidic leucine-rich nuc 98.7 7.8E-09 2.7E-13 88.1 4.2 129 25-210 15-149 (149)
124 2je0_A Acidic leucine-rich nuc 98.7 2.1E-08 7.3E-13 85.4 6.4 102 3-117 16-121 (149)
125 1a9n_A U2A', U2A'; complex (nu 98.6 2.3E-08 7.9E-13 87.8 4.8 136 21-213 13-152 (176)
126 4fdw_A Leucine rich hypothetic 98.6 5.6E-06 1.9E-10 82.6 22.6 191 27-270 113-308 (401)
127 4fdw_A Leucine rich hypothetic 98.6 3.8E-06 1.3E-10 83.8 21.0 55 318-380 299-354 (401)
128 1w8a_A SLIT protein; signaling 98.6 5.7E-07 1.9E-11 80.1 12.2 61 318-382 77-137 (192)
129 1a9n_A U2A', U2A'; complex (nu 98.6 1.5E-07 5.1E-12 82.6 8.1 127 3-158 18-151 (176)
130 2wfh_A SLIT homolog 2 protein 98.5 3.9E-07 1.3E-11 81.2 10.1 67 139-211 46-112 (193)
131 1w8a_A SLIT protein; signaling 98.5 1.2E-06 4.1E-11 78.0 12.7 110 372-492 30-139 (192)
132 4b8c_D Glucose-repressible alc 98.5 1.3E-07 4.4E-12 102.1 6.2 156 27-217 173-332 (727)
133 4fs7_A Uncharacterized protein 98.4 2.2E-05 7.6E-10 78.2 21.7 35 368-405 294-328 (394)
134 2wfh_A SLIT homolog 2 protein 98.4 1.5E-06 5.1E-11 77.4 11.5 59 318-381 77-136 (193)
135 4b8c_D Glucose-repressible alc 98.4 2.9E-07 9.8E-12 99.3 7.8 113 364-492 217-329 (727)
136 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.5E-12 81.7 3.9 91 372-470 62-154 (176)
137 2o6r_A Variable lymphocyte rec 98.4 3.5E-06 1.2E-10 73.8 11.9 61 344-407 73-134 (177)
138 4fs7_A Uncharacterized protein 98.3 6.5E-05 2.2E-09 74.8 20.6 80 344-437 294-374 (394)
139 1ds9_A Outer arm dynein; leuci 98.3 1.4E-08 4.6E-13 91.2 -6.2 84 145-246 68-151 (198)
140 2o6r_A Variable lymphocyte rec 98.2 9E-06 3.1E-10 71.1 11.8 60 318-382 75-135 (177)
141 1ds9_A Outer arm dynein; leuci 98.2 1.8E-08 6.1E-13 90.4 -6.0 61 146-213 92-152 (198)
142 3e4g_A ATP synthase subunit S, 98.2 5E-07 1.7E-11 78.1 3.2 88 320-412 62-154 (176)
143 3g39_A Variable lymphocyte rec 97.9 2E-05 6.9E-10 68.4 7.9 60 174-245 53-112 (170)
144 2r9u_A Variable lymphocyte rec 97.9 2.7E-05 9.2E-10 67.9 7.9 60 174-245 56-115 (174)
145 2ra8_A Uncharacterized protein 97.9 7.8E-06 2.7E-10 80.1 4.5 120 141-278 166-294 (362)
146 2r9u_A Variable lymphocyte rec 97.9 6.2E-05 2.1E-09 65.5 9.8 58 319-381 57-115 (174)
147 3g39_A Variable lymphocyte rec 97.8 6.9E-05 2.4E-09 64.9 9.7 82 319-407 30-112 (170)
148 2ra8_A Uncharacterized protein 97.8 2.7E-05 9.3E-10 76.2 7.6 58 57-117 137-201 (362)
149 4gt6_A Cell surface protein; l 97.7 0.0043 1.5E-07 61.5 22.0 77 319-405 265-342 (394)
150 2ifg_A High affinity nerve gro 97.6 0.00015 5E-09 70.8 9.0 98 9-117 13-111 (347)
151 2ifg_A High affinity nerve gro 97.6 0.0002 6.8E-09 69.9 9.8 101 323-439 12-113 (347)
152 3un9_A NLR family member X1; l 97.6 8.1E-06 2.8E-10 80.5 -0.5 166 58-246 71-250 (372)
153 4gt6_A Cell surface protein; l 97.6 0.013 4.3E-07 58.1 22.7 299 22-407 58-367 (394)
154 4h09_A Hypothetical leucine ri 97.4 0.017 6E-07 56.6 21.5 112 318-449 239-351 (379)
155 3un9_A NLR family member X1; l 97.4 5.9E-06 2E-10 81.5 -3.9 39 368-407 208-249 (372)
156 4h09_A Hypothetical leucine ri 97.4 0.039 1.3E-06 54.1 23.1 131 319-472 217-348 (379)
157 1io0_A Tropomodulin; LRR prote 95.6 0.011 3.9E-07 51.5 4.8 19 140-158 86-104 (185)
158 3rw6_A Nuclear RNA export fact 95.2 0.019 6.6E-07 53.1 5.3 87 173-270 168-259 (267)
159 1io0_A Tropomodulin; LRR prote 95.2 0.0042 1.4E-07 54.3 0.8 60 346-407 92-161 (185)
160 3rw6_A Nuclear RNA export fact 94.3 0.029 1E-06 51.9 3.9 12 369-380 194-205 (267)
161 3rfe_A Platelet glycoprotein I 79.7 2.1 7.2E-05 34.4 4.6 18 27-45 31-48 (130)
162 3rfe_A Platelet glycoprotein I 78.1 2 6.9E-05 34.5 4.0 36 175-212 31-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 67.3 1.4 4.8E-05 38.3 0.6 36 371-407 70-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 65.0 3.6 0.00012 35.7 2.7 60 346-406 97-166 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.1e-28 Score=266.36 Aligned_cols=232 Identities=15% Similarity=-0.025 Sum_probs=109.4
Q ss_pred hhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCC-CCCeeeeccccccchh
Q 009754 139 CYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLN-NLQWLEVRNCDSIEEV 217 (526)
Q Consensus 139 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~ 217 (526)
++..+..+++|++|+++++.-...++... ...+++|++|++++|.....+ |.. +..++ +|++|++++|.....+
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~n~l~~~~-p~~-l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGEL-PES-LTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCSSEEEECC-CTT-HHHHTTTCSEEECCSSEEEEEC
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcCCccCccc-cHH-HHhhhcCCcEEEccCCCcCCCc
Confidence 33445555666666666554111211110 123556666666665322222 222 34444 5666666665333222
Q ss_pred ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCC
Q 009754 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNK 291 (526)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~ 291 (526)
+... ....+++|+.|+++++.....++.. +..+++|++|++++| ++++.. ...++.++++++
T Consensus 385 ~~~~--------~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 385 LPNL--------CQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp CTTT--------TCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSS
T ss_pred Chhh--------hhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCC
Confidence 2210 1112566777777766433233322 556677777777764 343222 245666666666
Q ss_pred CCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCC
Q 009754 292 EPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE 371 (526)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 371 (526)
...+... ...+.+++|+.|+++++.....++... ..+++|+.|++++|.....+|.++..++
T Consensus 453 ~l~~~~p--------------~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 453 MLEGEIP--------------QELMYVKTLETLILDFNDLTGEIPSGL----SNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CCCSCCC--------------GGGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cccCcCC--------------HHHcCCCCceEEEecCCcccCcCCHHH----hcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 5543111 112234555555555543222222222 4555555555555543334555555555
Q ss_pred CCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
+|++|++++|.-...+|. .+..+++|+.|++++|
T Consensus 515 ~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTN 548 (768)
T ss_dssp TCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCC
Confidence 555555555433223332 2345555555555554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.3e-27 Score=261.32 Aligned_cols=417 Identities=12% Similarity=-0.000 Sum_probs=256.3
Q ss_pred ccceeEEeeccCceeeccc---ccCCcCCCceEEecccccccEecccc-ccccccccccccccceeeecccccccccccc
Q 009754 3 FLLFYFFNIHTHAHTFAYF---QVGIPSSLVNLNVSRCDKIEEIIRHV-GEEAKENRIAFSKLKVLILDYLPTLTSFCLE 78 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~---~~~~l~~L~~L~L~~c~~l~~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 78 (526)
+++|++|+++.+...-.++ .++.+++|++|++++|.....+|..+ .+ +++|++|+++++. +++....
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~-l~~~~~~ 169 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK--------LNSLEVLDLSANS-ISGANVV 169 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCC--------CTTCSEEECCSSC-CEEETHH
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhcc--------CCCCCEEECCCCc-cCCcCCh
Confidence 5788888888776553333 57888888888888864333334433 22 5556666555432 1111110
Q ss_pred C------------------------ceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccch
Q 009754 79 N------------------------YTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNS 134 (526)
Q Consensus 79 ~------------------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 134 (526)
. ....+++|++|++++|..-...|. +..+++|++|++++ +.
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~--------------n~ 234 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG--------------NK 234 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS--------------SC
T ss_pred hhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC--------------Cc
Confidence 0 012456666666666543333332 45566666666652 22
Q ss_pred hhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeecccccc
Q 009754 135 TIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSI 214 (526)
Q Consensus 135 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l 214 (526)
....++..+..+++|++|+++++.-... .+...+++|++|++++|.....+ |..+...+++|++|++++|...
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~i-p~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGP------IPPLPLKSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEES------CCCCCCTTCCEEECCSSEEEESC-CCCSCTTCTTCSEEECCSSEEE
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCc------cCccccCCCCEEECcCCccCCcc-CHHHHhhcCcCCEEECcCCcCC
Confidence 2223455666777777777777652111 12134677777777777433233 3332333477777777777443
Q ss_pred chhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcc-cc------Ccccceee
Q 009754 215 EEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMET-FI------SNSVVHVT 287 (526)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~------~~~L~~L~ 287 (526)
..++. .++.+++|+.|+++++.....++.. .+..+++|++|++++| ++.+ .+ +.+++.++
T Consensus 308 ~~~p~----------~~~~l~~L~~L~L~~n~l~~~ip~~--~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 308 GAVPP----------FFGSCSLLESLALSSNNFSGELPMD--TLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp ECCCG----------GGGGCTTCCEEECCSSEEEEECCHH--HHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEE
T ss_pred Cccch----------HHhcCCCccEEECCCCcccCcCCHH--HHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEE
Confidence 34443 3456777777777776432233221 1446777777777775 3432 22 12667777
Q ss_pred ecCCCCccccchhhhhhccccccccccCC--CCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC
Q 009754 288 TDNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP 365 (526)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 365 (526)
++++...+.. +.... .+++|+.|+++++.....++... ..+++|+.|++++|.....+|.
T Consensus 375 Ls~N~l~~~~--------------~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 375 LSSNNFSGPI--------------LPNLCQNPKNTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp CCSSEEEEEC--------------CTTTTCSTTCCCCEEECCSSEEEEECCGGG----GGCTTCCEEECCSSEEESCCCG
T ss_pred ccCCCcCCCc--------------ChhhhhcccCCccEEECCCCccccccCHHH----hcCCCCCEEECcCCcccCcccH
Confidence 7766543211 01111 25789999998874333444333 7889999999998865556777
Q ss_pred CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccccee
Q 009754 366 PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSF 445 (526)
Q Consensus 366 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 445 (526)
.+..+++|++|+++++.-...+|. .+..+++|++|++++|.-...++. ....+++|++|++++|.-...+
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPS--------GLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCCSCC
T ss_pred HHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCCH--------HHhcCCCCCEEEccCCccCCcC
Confidence 888889999999999754434443 346788999999988743222222 2245789999999998654567
Q ss_pred cCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754 446 CLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 493 (526)
Q Consensus 446 ~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~ 493 (526)
|..... +++|++|++++|.-...+|..+..+++|+.|+++.+.+.+
T Consensus 507 p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 507 PKWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CGGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ChHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 766655 8999999999987777888887788999999997766643
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.6e-26 Score=247.31 Aligned_cols=353 Identities=12% Similarity=0.100 Sum_probs=216.1
Q ss_pred eecCCCccEEEecCCCCccc------------------cccCcc--cCCCeeeEEecccccccceeeeccccchhhHHhh
Q 009754 81 TLEFPSLERVSMTHCPNMKT------------------FSHGIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY 140 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 140 (526)
...+++|++|+++++. ++. +|..+. .+++|++|++++ +.....+|
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~--------------n~l~~~~p 266 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN--------------CPNLTKLP 266 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC--------------CTTCSSCC
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecC--------------CcCCccCh
Confidence 4457777777777775 454 677766 777777777773 33334556
Q ss_pred hhhcCCCCCcEEEeecCCCCce--eccCCC-C-CcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccch
Q 009754 141 EEMIGFRDMEYLQLSYFPHLKE--IWHGQA-L-PVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE 216 (526)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~~-~-~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 216 (526)
..+..+++|++|+++++..++. ++.... + ....+++|++|++++|. ++.++..+.++.+++|++|++++|.....
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 6666777777777777653331 221110 0 00123677777777773 44553322367777777777777633224
Q ss_pred hccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCC-cceEeeecCCCCccccC-------cccceeee
Q 009754 217 VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE-LQHLTIQNCPDMETFIS-------NSVVHVTT 288 (526)
Q Consensus 217 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~-------~~L~~L~i 288 (526)
+| .++.+++|+.|+++++ .+..++.. +..+++ |++|+++++ +++.++. ..++.+++
T Consensus 346 ip-----------~~~~l~~L~~L~L~~N-~l~~lp~~---l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 346 LP-----------AFGSEIKLASLNLAYN-QITEIPAN---FCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp CC-----------CCEEEEEESEEECCSS-EEEECCTT---SEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEEC
T ss_pred hh-----------hhCCCCCCCEEECCCC-ccccccHh---hhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEEC
Confidence 44 2234567777777775 34444433 556676 777777774 4554441 14667777
Q ss_pred cCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCC
Q 009754 289 DNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW 368 (526)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 368 (526)
+++.+.+..... +.+.......+++|+.|+++++ .++.++...+ ..+++|+.|+++++. ++.+|....
T Consensus 410 s~N~l~~~~p~~-------l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~---~~l~~L~~L~Ls~N~-l~~i~~~~~ 477 (636)
T 4eco_A 410 SYNEIGSVDGKN-------FDPLDPTPFKGINVSSINLSNN-QISKFPKELF---STGSPLSSINLMGNM-LTEIPKNSL 477 (636)
T ss_dssp CSSCTTTTTTCS-------SCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHH---HTTCCCSEEECCSSC-CSBCCSSSS
T ss_pred cCCcCCCcchhh-------hcccccccccCCCCCEEECcCC-ccCcCCHHHH---ccCCCCCEEECCCCC-CCCcCHHHh
Confidence 776654321100 0000011114568999999885 4555554332 457889999998874 557776543
Q ss_pred CC--------CCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccc--
Q 009754 369 HL--------ENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYC-- 438 (526)
Q Consensus 369 ~l--------~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-- 438 (526)
.. ++|++|+++++ .++.+|.......+++|++|+++++ .++.++. ....+++|+.|++++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT--------QPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp EETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------GGGGCSSCCEEECCSCB
T ss_pred ccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcCh--------hhhcCCCCCEEECCCCc
Confidence 32 28999999985 5667765321137889999999886 3544433 123578899999854
Q ss_pred ----ccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754 439 ----LPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 439 ----c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
+.-...+|..... +++|++|++++|. ++.+|..+ .++|+.|+++++++.
T Consensus 548 ~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 548 DAQGNRTLREWPEGITL--CPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNPNI 600 (636)
T ss_dssp CTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCCSCC--CTTCCEEECCSCTTC
T ss_pred ccccCcccccChHHHhc--CCCCCEEECCCCc-CCccCHhH--hCcCCEEECcCCCCc
Confidence 3334566666655 8999999998864 48888875 378999999777664
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.5e-25 Score=236.29 Aligned_cols=273 Identities=16% Similarity=0.126 Sum_probs=137.8
Q ss_pred CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCC
Q 009754 176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT 255 (526)
Q Consensus 176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 255 (526)
+|++|+++++ .++.+ +...++.+++|++|++++| .++.+|. .+..+++|+.|+++++. +...+.
T Consensus 255 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~lp~----------~l~~l~~L~~L~l~~n~-l~~~~~-- 318 (606)
T 3t6q_A 255 SVESINLQKH-YFFNI-SSNTFHCFSGLQELDLTAT-HLSELPS----------GLVGLSTLKKLVLSANK-FENLCQ-- 318 (606)
T ss_dssp EEEEEECTTC-CCSSC-CTTTTTTCTTCSEEECTTS-CCSCCCS----------SCCSCTTCCEEECTTCC-CSBGGG--
T ss_pred ceeEEEeecC-ccCcc-CHHHhccccCCCEEeccCC-ccCCCCh----------hhcccccCCEEECccCC-cCcCch--
Confidence 5666666666 34444 3333677788888888877 5556554 45567788888887763 333311
Q ss_pred CccccCCCcceEeeecCCCCcccc------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCC
Q 009754 256 GNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGL 329 (526)
Q Consensus 256 ~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 329 (526)
..+..+++|++|++++|......+ ...++.++++++....+... ......+++|+.|+++++
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC------------NLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES------------TTTTTTCTTCCEEECCSC
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc------------chhcccCCCCCEEECCCC
Confidence 115677788888887763221222 34667777777665543210 112334566666666664
Q ss_pred CCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754 330 HKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 330 ~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
.+..+....+ ..+++|+.|++++|......+. .+..+++|++|++++|. +...+.. .+..+++|++|+++++.
T Consensus 387 -~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 387 -EPLSLKTEAF---KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGNH 460 (606)
T ss_dssp -SCEEECTTTT---TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTCB
T ss_pred -cCCcCCHHHh---cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCCC
Confidence 2444433322 4556666666665532222222 24555666666666642 3333222 23455666666666553
Q ss_pred CcceeeccCCcccccccccccccceeecccccccceecC-CCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEee
Q 009754 409 MIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCL-GNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVT 487 (526)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~ 487 (526)
--..... .......+++|+.|++++| .++.++. .... +++|++|++++|.-....|..+..+++| .++++
T Consensus 461 l~~~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 461 FPKGNIQ-----KTNSLQTLGRLEILVLSFC-DLSSIDQHAFTS--LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp CGGGEEC-----SSCGGGGCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred CCccccc-----cchhhccCCCccEEECCCC-ccCccChhhhcc--ccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 1110100 0001123455666666555 3444322 2222 5555555555543333333333344444 44444
Q ss_pred ccCC
Q 009754 488 EEEK 491 (526)
Q Consensus 488 ~~~~ 491 (526)
++++
T Consensus 532 ~N~l 535 (606)
T 3t6q_A 532 SNHI 535 (606)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 4433
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.1e-25 Score=240.34 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=108.5
Q ss_pred CCCCCCccEEEecCCCCceEecc-cCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccc-cccchh
Q 009754 315 KVSFPRLRWLELSGLHKVQHLWK-ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN-LLTFST 392 (526)
Q Consensus 315 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~ 392 (526)
...+++|+.|+++++. +..+.. ..+ ..+++|+.|++++|......|..+..+++|++|+++++. +.. ..+. .
T Consensus 395 ~~~l~~L~~L~l~~n~-l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~ 468 (606)
T 3vq2_A 395 FMGLEELQHLDFQHST-LKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSN-V 468 (606)
T ss_dssp CTTCTTCCEEECTTSE-EESTTTTTTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECS-C
T ss_pred ccCCCCCCeeECCCCc-cCCccChhhh---hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHH-h
Confidence 3456778888887753 333322 222 667888888888876555566677788888888888864 333 2221 3
Q ss_pred hhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccccee-cCCCccCCCCCccEEEEcCCCCceec
Q 009754 393 SESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSF-CLGNYALEFPSLKQVVVRQCPKMKIF 471 (526)
Q Consensus 393 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~l~~C~~l~~l 471 (526)
+..+++|++|++++| .++.+.. .....+++|++|+++++ .++.+ +..... +++|++|++++| +++.+
T Consensus 469 ~~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~l~~N-~l~~~ 536 (606)
T 3vq2_A 469 FANTTNLTFLDLSKC-QLEQISW-------GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQ--LYSLSTLDCSFN-RIETS 536 (606)
T ss_dssp CTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECCSS-CCSCEEGGGTTT--CTTCCEEECTTS-CCCCE
T ss_pred hccCCCCCEEECCCC-cCCccCh-------hhhcccccCCEEECCCC-cCCCcCHHHccC--CCcCCEEECCCC-cCccc
Confidence 467788888888887 4554432 11235789999999988 45554 444444 889999999886 57788
Q ss_pred cCCCCCCC-CcceEEeeccCCC
Q 009754 472 SQGVLDTP-MLNKVNVTEEEKD 492 (526)
Q Consensus 472 p~~~~~~~-~L~~l~l~~~~~~ 492 (526)
|..+..++ +|+.+++.++.+.
T Consensus 537 p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCCCC
T ss_pred CHhHhhhcccCcEEEccCCCcc
Confidence 88766666 5999999777765
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=9.4e-25 Score=233.00 Aligned_cols=234 Identities=17% Similarity=0.116 Sum_probs=147.8
Q ss_pred CCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc------CcccceeeecCCCCccccchhhhhh
Q 009754 231 GPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI------SNSVVHVTTDNKEPQKLTSEENFLL 304 (526)
Q Consensus 231 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~~~~ 304 (526)
++.+++|+.|+++++ .++.+|.. +..+++|++|++++| ++...+ ...++.++++++......
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~------- 341 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLEL------- 341 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBC-------
T ss_pred hccccCCCEEeccCC-ccCCCChh---hcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccccc-------
Confidence 444566666666664 34444333 445666666666664 343332 234556666555433100
Q ss_pred ccccccccccCCCCCCccEEEecCCCCceEec--ccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecccc
Q 009754 305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW--KENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH 382 (526)
Q Consensus 305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 382 (526)
.......+++|+.|+++++. ++.+. ...+ ..+++|+.|++++|......+..+..+++|++|+++++
T Consensus 342 ------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n- 410 (606)
T 3t6q_A 342 ------GTGCLENLENLRELDLSHDD-IETSDCCNLQL---RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT- 410 (606)
T ss_dssp ------CSSTTTTCTTCCEEECCSSC-CCEEEESTTTT---TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-
T ss_pred ------chhhhhccCcCCEEECCCCc-cccccCcchhc---ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-
Confidence 01123467899999998864 44442 1222 77889999999988644445667788899999999986
Q ss_pred CccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccc-eecCCCccCCCCCccEEE
Q 009754 383 GLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLT-SFCLGNYALEFPSLKQVV 461 (526)
Q Consensus 383 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~ 461 (526)
.+........+..+++|++|++++|. ++.... .....+++|++|++++++--. .++.......+++|++|+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred cCCCcccchhhhCcccCCEEECCCCc-cCCcCH-------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 44444333345788999999998874 332211 122457999999999985322 233221112489999999
Q ss_pred EcCCCCceeccCCCCCCCCcceEEeeccCCCCCc
Q 009754 462 VRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDDE 495 (526)
Q Consensus 462 l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~~~ 495 (526)
+++|.-....|..+..+++|+.|+++++++....
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 9998555555777778999999999888776443
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.3e-25 Score=242.89 Aligned_cols=348 Identities=11% Similarity=0.056 Sum_probs=234.0
Q ss_pred eecCCCccEEEecCCCCccc------------------cccCcc--cCCCeeeEEecccccccceeeeccccchhhHHhh
Q 009754 81 TLEFPSLERVSMTHCPNMKT------------------FSHGIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY 140 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 140 (526)
...+++|+.|+++++. ++. +|..+. .+++|++|++++ +.....+|
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~--------------N~l~~~iP 508 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN--------------CPNMTQLP 508 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES--------------CTTCCSCC
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcC--------------CCCCccCh
Confidence 4568888888888885 554 777776 788888888873 33445566
Q ss_pred hhhcCCCCCcEEEeecCCCCce--eccCCC-C--CcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754 141 EEMIGFRDMEYLQLSYFPHLKE--IWHGQA-L--PVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE 215 (526)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~~-~--~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (526)
..+..+++|+.|+++++..++. ++.... + ....+++|++|++++|. ++.++....++.+++|++|++++|. +.
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~ 586 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VR 586 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CC
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cc
Confidence 7777888888888888753331 221110 0 01245688888888874 4455441237888888888888873 44
Q ss_pred hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCC-cceEeeecCCCCccccC-------cccceee
Q 009754 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE-LQHLTIQNCPDMETFIS-------NSVVHVT 287 (526)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~-------~~L~~L~ 287 (526)
.+| .++.+++|+.|+++++. +..++.. +..+++ |+.|++++| +++.++. ..|+.|+
T Consensus 587 ~lp-----------~~~~L~~L~~L~Ls~N~-l~~lp~~---l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 587 HLE-----------AFGTNVKLTDLKLDYNQ-IEEIPED---FCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp BCC-----------CCCTTSEESEEECCSSC-CSCCCTT---SCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEE
T ss_pred cch-----------hhcCCCcceEEECcCCc-cccchHH---HhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEE
Confidence 554 33567888888888864 4455443 557777 888888885 4655541 2377888
Q ss_pred ecCCCCccccchhhhhhccccccccccCC--CCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC
Q 009754 288 TDNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP 365 (526)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 365 (526)
++++.+.+... ..++..+ .+++|+.|+++++ .++.++...+ ..+++|+.|++++| .++.+|.
T Consensus 651 Ls~N~l~g~ip-----------~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~Ls~N-~L~~ip~ 714 (876)
T 4ecn_A 651 FSYNKIGSEGR-----------NISCSMDDYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTIILSNN-LMTSIPE 714 (876)
T ss_dssp CCSSCTTTTSS-----------SCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEECCSC-CCSCCCT
T ss_pred CcCCcCCCccc-----------cchhhhccccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEECCCC-cCCccCh
Confidence 88877654211 0111122 3358999999886 4555554332 46789999999987 4667776
Q ss_pred CCCCC--------CCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecc
Q 009754 366 PSWHL--------ENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELY 437 (526)
Q Consensus 366 ~~~~l--------~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 437 (526)
.+... ++|+.|++++| .+..+|.......+++|+.|+++++ .++.++. ....+++|+.|+++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~--------~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT--------QPLNSSQLKAFGIR 784 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------GGGGCTTCCEEECC
T ss_pred HHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch--------hhhcCCCCCEEECC
Confidence 55432 38999999996 6667765321137899999999887 4554432 12357899999997
Q ss_pred ccc------ccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754 438 CLP------SLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 438 ~c~------~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
+++ -...+|..... +++|++|++++|. ++.+|..+ .++|+.|++++|++.
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITT--CPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNPNI 840 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCTTC
T ss_pred CCCCcccccccccChHHHhc--CCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCCCC
Confidence 733 34556666555 8999999999875 48899875 379999999877764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.2e-25 Score=237.88 Aligned_cols=427 Identities=14% Similarity=0.086 Sum_probs=216.2
Q ss_pred ccceeEEeeccCceeeccc-ccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCc
Q 009754 3 FLLFYFFNIHTHAHTFAYF-QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY 80 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (526)
+++|++|+++.+......+ .++.+++|++|+++++ .+..+ |..+++ +++|++|+++++. ++......
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~--------l~~L~~L~L~~n~-l~~~~~~~- 123 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSG--------LTSLENLVAVETK-LASLESFP- 123 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTT--------CTTCCEEECTTSC-CCCSSSSC-
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCC--------cccCCEEEccCCc-cccccccc-
Confidence 5789999999886555433 6889999999999997 67777 666766 8899999999764 44444332
Q ss_pred eecCCCccEEEecCCCCcc-ccccCcccCCCeeeEEeccccccc-----------------ceeeeccccchhhHHhhhh
Q 009754 81 TLEFPSLERVSMTHCPNMK-TFSHGILSTPKLHKVQVTEKEEGE-----------------LHHWEGNKLNSTIQKCYEE 142 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~ 142 (526)
...+++|++|++++|..-. .+|..+..+++|++|+++++.-.. .+...+ +.+..++..
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~----n~l~~~~~~ 199 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL----NPIDFIQDQ 199 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT----CCCCEECTT
T ss_pred cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC----CCcceeCcc
Confidence 4578999999999985333 467778889999999998642110 111111 112222222
Q ss_pred hcCCCCCcEEEeecCCCCce-e--ccCC---------------------CCCcCCC-----CCccEEEEecCCCcccCCC
Q 009754 143 MIGFRDMEYLQLSYFPHLKE-I--WHGQ---------------------ALPVSFF-----NNLARLVVDDCTNMSSAIP 193 (526)
Q Consensus 143 ~~~~~~L~~L~l~~~~~l~~-~--~~~~---------------------~~~~~~l-----~~L~~L~l~~c~~l~~~~~ 193 (526)
.....+|+.|+++++.-... . +... .+....+ -+++.+.+..+..+....+
T Consensus 200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence 22333566666655431100 0 0000 0000000 0122222212222222212
Q ss_pred hHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCC
Q 009754 194 ANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP 273 (526)
Q Consensus 194 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 273 (526)
. +..+++|+.|+++++ .+..++ ....+++|+.|+++++.. +.++. + .+++|++|++++|.
T Consensus 280 ~--~~~l~~L~~L~l~~~-~~~~l~-----------~l~~~~~L~~L~l~~n~l-~~lp~----~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 280 K--FHCLANVSAMSLAGV-SIKYLE-----------DVPKHFKWQSLSIIRCQL-KQFPT----L-DLPFLKSLTLTMNK 339 (606)
T ss_dssp S--CGGGTTCSEEEEESC-CCCCCC-----------CCCTTCCCSEEEEESCCC-SSCCC----C-CCSSCCEEEEESCS
T ss_pred c--cccCCCCCEEEecCc-cchhhh-----------hccccccCCEEEcccccC-ccccc----C-CCCccceeeccCCc
Confidence 2 445555555555555 233332 123345555555555533 44331 2 45555555555543
Q ss_pred CCcccc---CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccc
Q 009754 274 DMETFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLE 350 (526)
Q Consensus 274 ~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~ 350 (526)
.+.... ...++.++++++.+....... .....+++|+.|+++++. ++.++... ..+++|+
T Consensus 340 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~------------~~~~~~~~L~~L~L~~n~-l~~~~~~~----~~l~~L~ 402 (606)
T 3vq2_A 340 GSISFKKVALPSLSYLDLSRNALSFSGCCS------------YSDLGTNSLRHLDLSFNG-AIIMSANF----MGLEELQ 402 (606)
T ss_dssp SCEECCCCCCTTCCEEECCSSCEEEEEECC------------HHHHCCSCCCEEECCSCS-EEEECCCC----TTCTTCC
T ss_pred CccchhhccCCCCCEEECcCCccCCCcchh------------hhhccCCcccEeECCCCc-cccchhhc----cCCCCCC
Confidence 332222 234555555555443321100 011234566666666543 44444322 5556666
Q ss_pred eeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccccccccc
Q 009754 351 SLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFK 429 (526)
Q Consensus 351 ~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 429 (526)
.|++++|......+ ..+..+++|++|++++|. +....+. .+..+++|++|++++|.-...+.. .....++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~ 473 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLS-------NVFANTT 473 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGGEEC-------SCCTTCT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCCcCCCcchH-------HhhccCC
Confidence 66666654222222 345556666666666653 3332221 234556666666665531111111 0112356
Q ss_pred ccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754 430 ELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 430 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
+|+.|++++| .++.++..... .+++|++|++++|.-....|..+..+++|+.|+++++++.
T Consensus 474 ~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 474 NLTFLDLSKC-QLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCEEECCCC-cCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 6666666665 34444322211 2566666666665433334555555666666666555443
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.6e-24 Score=229.55 Aligned_cols=249 Identities=18% Similarity=0.164 Sum_probs=160.2
Q ss_pred HhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCc
Q 009754 197 LRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDME 276 (526)
Q Consensus 197 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 276 (526)
+..+++|++|++++| .+..++. ....+ +|+.|+++++. +..++. ..+++|+.|++.++....
T Consensus 278 ~~~l~~L~~L~l~~~-~l~~l~~----------~~~~~-~L~~L~l~~n~-~~~l~~-----~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 278 FNCLTNVSSFSLVSV-TIERVKD----------FSYNF-GWQHLELVNCK-FGQFPT-----LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp TGGGTTCSEEEEESC-EECSCCB----------CCSCC-CCSEEEEESCB-CSSCCB-----CBCSSCCEEEEESCBSCC
T ss_pred hcCcCcccEEEecCc-cchhhhh----------hhccC-CccEEeeccCc-ccccCc-----ccccccCEEeCcCCcccc
Confidence 455666666666666 3444443 23344 66777776653 333332 256777777777654222
Q ss_pred ccc---CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeE
Q 009754 277 TFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLE 353 (526)
Q Consensus 277 ~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~ 353 (526)
..+ ...++.++++++......... .....+++|+.|+++++ .+..++... ..+++|+.|+
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~------------~~~~~~~~L~~L~l~~n-~l~~~~~~~----~~l~~L~~L~ 402 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCS------------QSDFGTTSLKYLDLSFN-GVITMSSNF----LGLEQLEHLD 402 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEE------------HHHHTCSCCCEEECCSC-SEEEEEEEE----ETCTTCCEEE
T ss_pred ccccccCCCCCEEeCcCCccCcccccc------------ccccccCccCEEECCCC-ccccccccc----cccCCCCEEE
Confidence 221 356677777776655432100 11235689999999886 455555443 7789999999
Q ss_pred eccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCc-ceeeccCCccccccccccccc
Q 009754 354 ISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI-EQIIQLQVGEEAKDCNVFKEL 431 (526)
Q Consensus 354 l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~~~~~~~~~~L 431 (526)
+++|......+ ..+..+++|++|++++|. +...+.. .+..+++|++|++++|.-. ..++. ....+++|
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L 472 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNL 472 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchh-hhhcCCcCcEEECcCCcCccccchh--------hhhcccCC
Confidence 99875333333 357788999999999974 4444332 3477899999999998532 12322 22458999
Q ss_pred ceeeccccccccee-cCCCccCCCCCccEEEEcCCCCceecc-CCCCCCCCcceEEeeccCCCCC
Q 009754 432 RYLELYCLPSLTSF-CLGNYALEFPSLKQVVVRQCPKMKIFS-QGVLDTPMLNKVNVTEEEKDDD 494 (526)
Q Consensus 432 ~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~~L~~l~l~~~~~~~~ 494 (526)
+.|++++| .++.+ +..... +++|++|++++| +++.+| ..+..+++|+.++++++.+...
T Consensus 473 ~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 473 TFLDLSQC-QLEQLSPTAFNS--LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CEEECTTS-CCCEECTTTTTT--CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCC-ccccCChhhhhc--ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99999998 56666 444444 899999999987 555555 4566789999999987776543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.6e-25 Score=237.77 Aligned_cols=360 Identities=14% Similarity=0.132 Sum_probs=251.2
Q ss_pred cccccEeccccccccccccccccccceeeecccccccc------------------ccccCcee--cCCCccEEEecCCC
Q 009754 37 CDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTS------------------FCLENYTL--EFPSLERVSMTHCP 96 (526)
Q Consensus 37 c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~~--~~~~L~~L~l~~c~ 96 (526)
++.+..+|..+++ +++|++|+++++. ++. ++.. .. .+++|++|++++|.
T Consensus 192 ~n~l~~ip~~l~~--------l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 192 SNNITFVSKAVMR--------LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp SCEEEEECGGGGG--------CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCT
T ss_pred cCCCccCCHHHhc--------ccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCc
Confidence 3466678877776 8899999998765 555 4333 44 68999999999998
Q ss_pred CccccccCcccCCCeeeEEecccccccceeeeccccch-hhH-HhhhhhcCC------CCCcEEEeecCCCCceecc--C
Q 009754 97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNS-TIQ-KCYEEMIGF------RDMEYLQLSYFPHLKEIWH--G 166 (526)
Q Consensus 97 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~~------~~L~~L~l~~~~~l~~~~~--~ 166 (526)
....+|..+..+++|++|++++ +. ... .+|..+..+ ++|+.|+++++. ++.++. .
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~--------------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~ 325 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVAC--------------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS 325 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTT--------------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH
T ss_pred CCccChHHHhcCCCCCEEECcC--------------CCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh
Confidence 7788888888899999999983 22 222 456555444 899999999876 444433 2
Q ss_pred CCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCc-cceEecCCC
Q 009754 167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPK-LYGLRLIDL 245 (526)
Q Consensus 167 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~ 245 (526)
. ..+++|++|++++|.....++ .+..+++|++|++++| .+..+|. .+..+++ |+.|+++++
T Consensus 326 l----~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N-~l~~lp~----------~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 326 L----QKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYN-QITEIPA----------NFCGFTEQVENLSFAHN 387 (636)
T ss_dssp H----TTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSS-EEEECCT----------TSEEECTTCCEEECCSS
T ss_pred h----ccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCC-ccccccH----------hhhhhcccCcEEEccCC
Confidence 2 567899999999885332553 2788899999999988 4556654 4566788 999999886
Q ss_pred ccccccccCCCccccCCCcceEeeecCCCCcccc-------------CcccceeeecCCCCccccchhhhhhcccccccc
Q 009754 246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF 312 (526)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~ 312 (526)
. ++.+|.... ...+++|+.|+++++ ++.... ...++.|+++++.+..++....
T Consensus 388 ~-l~~lp~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----------- 453 (636)
T 4eco_A 388 K-LKYIPNIFD-AKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF----------- 453 (636)
T ss_dssp C-CSSCCSCCC-TTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH-----------
T ss_pred c-Ccccchhhh-hcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH-----------
Confidence 4 556655422 223458999999985 454432 1367888888887776543210
Q ss_pred ccCCCCCCccEEEecCCCCceEecccCChh----hhhhcccceeEeccCcCccccCCCCC--CCCCCCEEeeccccCccc
Q 009754 313 DEKVSFPRLRWLELSGLHKVQHLWKENDES----NKAFANLESLEISECSKLQKLVPPSW--HLENLEALEVSKCHGLIN 386 (526)
Q Consensus 313 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~----~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~ 386 (526)
..+++|+.|+++++ .++.++...+.. ...+++|+.|++++|. ++.+|..+. .+++|++|+++++ .++.
T Consensus 454 ---~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ 527 (636)
T 4eco_A 454 ---STGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SFSK 527 (636)
T ss_dssp ---HTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSS-CCSS
T ss_pred ---ccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCC-CCCC
Confidence 13589999999986 466777655321 0223499999999974 668888876 8999999999996 5666
Q ss_pred cccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCC
Q 009754 387 LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCP 466 (526)
Q Consensus 387 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 466 (526)
+|. .+..+++|++|+++++..+..-.. .+........+++|+.|+++++ .++.+|... +++|++|++++|+
T Consensus 528 ip~--~~~~l~~L~~L~Ls~N~~ls~N~l--~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 528 FPT--QPLNSSTLKGFGIRNQRDAQGNRT--LREWPEGITLCPSLTQLQIGSN-DIRKVNEKI----TPNISVLDIKDNP 598 (636)
T ss_dssp CCC--GGGGCSSCCEEECCSCBCTTCCBC--CCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CTTCCEEECCSCT
T ss_pred cCh--hhhcCCCCCEEECCCCcccccCcc--cccChHHHhcCCCCCEEECCCC-cCCccCHhH----hCcCCEEECcCCC
Confidence 665 346899999999976431110000 0111112345899999999998 458888764 5899999999986
Q ss_pred Cce
Q 009754 467 KMK 469 (526)
Q Consensus 467 ~l~ 469 (526)
-..
T Consensus 599 l~~ 601 (636)
T 4eco_A 599 NIS 601 (636)
T ss_dssp TCE
T ss_pred Ccc
Confidence 544
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=230.06 Aligned_cols=227 Identities=19% Similarity=0.199 Sum_probs=148.9
Q ss_pred CCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc---CcccceeeecCCCCccccchhhhhhcccc
Q 009754 232 PLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI---SNSVVHVTTDNKEPQKLTSEENFLLAHQV 308 (526)
Q Consensus 232 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~~ 308 (526)
..+++|+.|+++++ .+..++.. +..+ +|++|++++| ++..++ ...++.+.++++......
T Consensus 279 ~~l~~L~~L~l~~~-~l~~l~~~---~~~~-~L~~L~l~~n-~~~~l~~~~l~~L~~L~l~~n~~~~~~----------- 341 (570)
T 2z63_A 279 NCLTNVSSFSLVSV-TIERVKDF---SYNF-GWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAF----------- 341 (570)
T ss_dssp GGGTTCSEEEEESC-EECSCCBC---CSCC-CCSEEEEESC-BCSSCCBCBCSSCCEEEEESCBSCCBC-----------
T ss_pred cCcCcccEEEecCc-cchhhhhh---hccC-CccEEeeccC-cccccCcccccccCEEeCcCCcccccc-----------
Confidence 34556666666654 23344333 3344 6666666664 333333 345556666555433211
Q ss_pred ccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccc
Q 009754 309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL 388 (526)
Q Consensus 309 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 388 (526)
....+++|+.|+++++. ++..... ......+++|+.|++++|. +..++..+..+++|++|+++++. +...+
T Consensus 342 -----~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 412 (570)
T 2z63_A 342 -----SEVDLPSLEFLDLSRNG-LSFKGCC-SQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMS 412 (570)
T ss_dssp -----CCCBCTTCCEEECCSSC-CBEEEEE-EHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCT
T ss_pred -----ccccCCCCCEEeCcCCc-cCccccc-cccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-ccccc
Confidence 11467899999999864 4443200 0112678999999999975 56666568889999999999964 55544
Q ss_pred cchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccc-ceecCCCccCCCCCccEEEEcCCCC
Q 009754 389 TFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSL-TSFCLGNYALEFPSLKQVVVRQCPK 467 (526)
Q Consensus 389 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~l~~C~~ 467 (526)
....+..+++|++|++++|. ++.... .....+++|+.|++.+|.-. ..+|..... +++|++|++++|.-
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~--l~~L~~L~l~~n~l 482 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTH-TRVAFN-------GIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQL 482 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSC-CEECCT-------TTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEECTTSCC
T ss_pred chhhhhcCCCCCEEeCcCCc-ccccch-------hhhhcCCcCcEEECcCCcCccccchhhhhc--ccCCCEEECCCCcc
Confidence 33345788999999999984 443322 12245799999999998543 357765555 99999999999855
Q ss_pred ceeccCCCCCCCCcceEEeeccCCCCC
Q 009754 468 MKIFSQGVLDTPMLNKVNVTEEEKDDD 494 (526)
Q Consensus 468 l~~lp~~~~~~~~L~~l~l~~~~~~~~ 494 (526)
....|..+..+++|+.|+++++++...
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 555577777899999999987777543
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.3e-25 Score=229.00 Aligned_cols=410 Identities=13% Similarity=0.095 Sum_probs=262.9
Q ss_pred cccceeEEeeccCceeecc-cccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccC
Q 009754 2 IFLLFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLEN 79 (526)
Q Consensus 2 ~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 79 (526)
+++++++|+++.+...... ..++.+++|++|+++++ .+..+ |..+.+ +++|++|+++++ .++.++..
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~lp~~- 87 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKF--------NQELEYLDLSHN-KLVKISCH- 87 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTT--------CTTCCEEECCSS-CCCEEECC-
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhc--------ccCCCEEecCCC-ceeecCcc-
Confidence 3467888888877655433 36788888888888886 57666 555665 788888888875 45555443
Q ss_pred ceecCCCccEEEecCCCCcc-ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCC--cEEEeec
Q 009754 80 YTLEFPSLERVSMTHCPNMK-TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDM--EYLQLSY 156 (526)
Q Consensus 80 ~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L--~~L~l~~ 156 (526)
.+++|++|++++|..-. .+|..+..+++|++|++++. .+.. ..+..+++| +.|++++
T Consensus 88 ---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n---------------~l~~--~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 88 ---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT---------------HLEK--SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp ---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES---------------SCCG--GGGGGGTTSCEEEEEEEE
T ss_pred ---ccCCccEEeccCCccccccchhhhccCCcceEEEecCc---------------ccch--hhccccccceeeEEEeec
Confidence 58888888888885333 35567777888888888842 1111 123345555 8888877
Q ss_pred CCC--CceeccCC----------------------CCCcCCCCCccEEEEecCCC------cccCCChHHHhcCCCCCee
Q 009754 157 FPH--LKEIWHGQ----------------------ALPVSFFNNLARLVVDDCTN------MSSAIPANLLRCLNNLQWL 206 (526)
Q Consensus 157 ~~~--l~~~~~~~----------------------~~~~~~l~~L~~L~l~~c~~------l~~~~~~~~l~~l~~L~~L 206 (526)
+.- ....+... ......+++|+.|++++|.. .....+ .++.+++|++|
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L 225 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNL 225 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhc
Confidence 652 11111000 00012355666666665530 111111 15666777777
Q ss_pred eeccccccchhcc-ccccccccCCCCCCCCccceEecCCCccccccccCCC--ccccCCCcceEeeecCCCCccccC---
Q 009754 207 EVRNCDSIEEVLH-LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG--NIIELPELQHLTIQNCPDMETFIS--- 280 (526)
Q Consensus 207 ~l~~~~~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~--- 280 (526)
+++++......+. +. .....++|+.|+++++.--..++.... ....+++|+.++++++ .+ .++.
T Consensus 226 ~l~~~~l~~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~ 295 (520)
T 2z7x_B 226 TLNNIETTWNSFIRIL--------QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYI 295 (520)
T ss_dssp EEEEEEEEHHHHHHHH--------HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHH
T ss_pred cccccccCHHHHHHHH--------HHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhh
Confidence 7766532221110 00 001235788888887643224443310 0157888888888885 34 3331
Q ss_pred ------cccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE-ecccCChhhhhhcccceeE
Q 009754 281 ------NSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWKENDESNKAFANLESLE 353 (526)
Q Consensus 281 ------~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~ 353 (526)
..++.++++++....... ...+++|+.|+++++. ++. ++... ..+++|+.|+
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~~~~----------------~~~l~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~ 354 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVHMLC----------------PSKISPFLHLDFSNNL-LTDTVFENC----GHLTELETLI 354 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCC----------------CSSCCCCCEEECCSSC-CCTTTTTTC----CCCSSCCEEE
T ss_pred hcccccCceeEEEcCCCccccccc----------------hhhCCcccEEEeECCc-cChhhhhhh----ccCCCCCEEE
Confidence 458888888887654321 1356899999999864 443 33333 7789999999
Q ss_pred eccCcCcc---ccCCCCCCCCCCCEEeeccccCccc-cccchhhhhccCCceEEEecccCcceeeccCCccccccccccc
Q 009754 354 ISECSKLQ---KLVPPSWHLENLEALEVSKCHGLIN-LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFK 429 (526)
Q Consensus 354 l~~c~~l~---~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 429 (526)
+++|. ++ .+|..+..+++|++|+++++. +.. ++.. ....+++|++|++++|.--..++. ...+
T Consensus 355 L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~~ 421 (520)
T 2z7x_B 355 LQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG-DCSWTKSLLSLNMSSNILTDTIFR----------CLPP 421 (520)
T ss_dssp CCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC-SCCCCTTCCEEECCSSCCCGGGGG----------SCCT
T ss_pred ccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcccccc-hhccCccCCEEECcCCCCCcchhh----------hhcc
Confidence 99875 44 445567888999999999964 555 6653 346779999999999752222221 1127
Q ss_pred ccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEeeccCCC
Q 009754 430 ELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 430 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~~ 492 (526)
+|+.|+++++ .++.+|..... +++|++|++++| +++.+|.. +..+++|+.++++++.+.
T Consensus 422 ~L~~L~Ls~N-~l~~ip~~~~~--l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 422 RIKVLDLHSN-KIKSIPKQVVK--LEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TCCEEECCSS-CCCCCCGGGGG--CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCC-cccccchhhhc--CCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCc
Confidence 9999999998 68888887665 999999999996 77789876 667899999999777765
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.4e-24 Score=225.04 Aligned_cols=420 Identities=15% Similarity=0.126 Sum_probs=253.5
Q ss_pred cccceeEEeeccCceeecc-cccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccC
Q 009754 2 IFLLFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLEN 79 (526)
Q Consensus 2 ~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 79 (526)
+++.++.++++........ ..++.+++|++|+++++ .+..++. .+.+ +++|++|+++++ .+++.+...
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~ 93 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYS--------LGSLEHLDLSDN-HLSSLSSSW 93 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTT--------CTTCCEEECTTS-CCCSCCHHH
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccc--------cccCCEEECCCC-ccCccCHHH
Confidence 4578899999987755433 36888999999999996 6777754 4555 888999999875 344444332
Q ss_pred ceecCCCccEEEecCCCCcc--ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhh-hhhcCCCCCcEEEeec
Q 009754 80 YTLEFPSLERVSMTHCPNMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSY 156 (526)
Q Consensus 80 ~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~ 156 (526)
...+++|++|++++|. ++ ..|..+..+++|++|+++++ ..+..++ ..+..+++|++|++++
T Consensus 94 -~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n--------------~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 94 -FGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNV--------------ETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp -HTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEES--------------SSCCEECTTTTTTCCEEEEEEEEE
T ss_pred -hccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCC--------------ccccccCHhhhhcccccCeeeccC
Confidence 3468899999999884 44 34556677888999998842 2223333 3456678888888887
Q ss_pred CCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc--cc--ccc--------
Q 009754 157 FPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH--LE--EQN-------- 224 (526)
Q Consensus 157 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~--~~--~~~-------- 224 (526)
+.-....+... ..+++|++|++.++.. ..+ +...+..+++|++|++++|. +...+. .. ...
T Consensus 158 n~l~~~~~~~l----~~l~~L~~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 158 LSLRNYQSQSL----KSIRDIHHLTLHLSES-AFL-LEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp TTCCEECTTTT----TTCSEEEEEEEECSBS-TTH-HHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEE
T ss_pred CcccccChhhh----hccccCceEecccCcc-ccc-chhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceec
Confidence 76222222222 3466777777776642 222 33334567777777777763 333210 00 000
Q ss_pred -----------cccCCCCCCCCccceEecCCCccccccccC----CCccccCCCcceEeeecC-----------------
Q 009754 225 -----------ADKEHRGPLFPKLYGLRLIDLPKLKRFCNF----TGNIIELPELQHLTIQNC----------------- 272 (526)
Q Consensus 225 -----------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~~~~~L~~L~l~~c----------------- 272 (526)
..+. ....+++|+.+.+++|.. ..+... ...+..+++|+.|.+.++
T Consensus 231 ~~n~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 231 RGSVLTDESFNELLK-LLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp ESCEEEHHHHHHHHG-GGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred cccccchhHHHHHHH-Hhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 0000 112233344444433321 110000 000223334444444332
Q ss_pred -----------CCCcccc------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEe
Q 009754 273 -----------PDMETFI------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHL 335 (526)
Q Consensus 273 -----------~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 335 (526)
.++..++ ...++.|+++++.+.+... ......+.+++|+.|+++++ .++.+
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~~~l~~L~~L~Ls~N-~l~~~ 376 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL-----------KNSACKGAWPSLQTLVLSQN-HLRSM 376 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH-----------HHHTCTTSSTTCCEEECTTS-CCCCH
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc-----------cchhhhhccccCcEEEccCC-ccccc
Confidence 1233222 2334444444444332100 00112356789999999886 45544
Q ss_pred cccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeec
Q 009754 336 WKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQ 415 (526)
Q Consensus 336 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 415 (526)
+... .....+++|+.|++++| .++.+|..+..+++|++|+++++ .++.++.. -.++|++|++++| +++.+.
T Consensus 377 ~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~N-~l~~~~- 447 (549)
T 2z81_A 377 QKTG-EILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSNN-NLDSFS- 447 (549)
T ss_dssp HHHH-HHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCSS-CCSCCC-
T ss_pred ccch-hhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch----hcCCceEEECCCC-Chhhhc-
Confidence 3210 01167889999999987 57788888888899999999996 46666542 2368999999887 455432
Q ss_pred cCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CCCCCCCcceEEeeccCCC
Q 009754 416 LQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 416 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~l~~~~~~ 492 (526)
..+++|++|+++++ .++.+|.. .. +++|++|+++++ +++.+|. .+..+++|+.++++++.+.
T Consensus 448 ----------~~l~~L~~L~Ls~N-~l~~ip~~-~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 448 ----------LFLPRLQELYISRN-KLKTLPDA-SL--FPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp ----------CCCTTCCEEECCSS-CCSSCCCG-GG--CTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred ----------ccCChhcEEECCCC-ccCcCCCc-cc--CccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 24799999999998 67888764 33 899999999986 5655554 4667899999999777664
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2.9e-23 Score=229.29 Aligned_cols=131 Identities=8% Similarity=0.012 Sum_probs=86.7
Q ss_pred ccceeEEeeccCceeec-ccccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCc
Q 009754 3 FLLFYFFNIHTHAHTFA-YFQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY 80 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (526)
.++++.||++....... ...++.+++|++|+|++|..+..+ |..+.+ +++|++|+++++. ++...+..
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~--------L~~L~~L~Ls~N~-l~~~~p~~- 92 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN--------LPNLRILDLGSSK-IYFLHPDA- 92 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS--------CTTCCEEECTTCC-CCEECTTS-
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC--------CCCCCEEECCCCc-CcccCHhH-
Confidence 46788888887665443 346888888888988887667777 555665 7888888888753 44443333
Q ss_pred eecCCCccEEEecCCCCccccccC--cccCCCeeeEEecccccccceeeeccccchhhHHh--hhhhcCCCCCcEEEeec
Q 009754 81 TLEFPSLERVSMTHCPNMKTFSHG--ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC--YEEMIGFRDMEYLQLSY 156 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~ 156 (526)
...+++|++|++++|..-...+.. +..+++|++|+++++ .+..+ ...+..+++|++|++++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N---------------~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN---------------QIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC---------------CCCCCCCCGGGGTCSSCCEEEEES
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC---------------cccccccchhHhhCCCCCEEECCC
Confidence 346788888888888533334443 566788888888732 11222 13455677777777777
Q ss_pred CC
Q 009754 157 FP 158 (526)
Q Consensus 157 ~~ 158 (526)
+.
T Consensus 158 N~ 159 (844)
T 3j0a_A 158 NQ 159 (844)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.9e-24 Score=235.56 Aligned_cols=362 Identities=11% Similarity=0.061 Sum_probs=205.8
Q ss_pred ccccCCcCCCceEEecccccccE------------------eccccc--cccccccccccccceeeeccccccccccccC
Q 009754 20 YFQVGIPSSLVNLNVSRCDKIEE------------------IIRHVG--EEAKENRIAFSKLKVLILDYLPTLTSFCLEN 79 (526)
Q Consensus 20 ~~~~~~l~~L~~L~L~~c~~l~~------------------l~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 79 (526)
+..++.+++|++|+|+++ .+.. +|..++ + +++|++|+++++.....++..
T Consensus 441 P~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--------L~~L~~L~Ls~N~l~~~iP~~- 510 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSN--------LKDLTDVELYNCPNMTQLPDF- 510 (876)
T ss_dssp CGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--------CTTCCEEEEESCTTCCSCCGG-
T ss_pred hHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhcc--------CCCCCEEECcCCCCCccChHH-
Confidence 346888999999999996 4665 565544 4 666777777665544444322
Q ss_pred ceecCCCccEEEecCCCCcc--ccccCcccC-------CCeeeEEecccccccceeeeccccchhhHHhhh--hhcCCCC
Q 009754 80 YTLEFPSLERVSMTHCPNMK--TFSHGILST-------PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE--EMIGFRD 148 (526)
Q Consensus 80 ~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 148 (526)
...+++|+.|++++|..++ .+|..+..+ ++|+.|++++ +.+..++. .+..+++
T Consensus 511 -l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~---------------N~L~~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 511 -LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY---------------NNLEEFPASASLQKMVK 574 (876)
T ss_dssp -GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS---------------SCCCBCCCHHHHTTCTT
T ss_pred -HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC---------------CcCCccCChhhhhcCCC
Confidence 3456677777777664333 244433322 3666666652 22224444 5555666
Q ss_pred CcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCC-CCeeeeccccccchhcccccccccc
Q 009754 149 MEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNN-LQWLEVRNCDSIEEVLHLEEQNADK 227 (526)
Q Consensus 149 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~ 227 (526)
|+.|+++++. ++.++ .. ..+++|+.|++++|. ++.+ |.. +..+++ |++|++++|. +..+|...
T Consensus 575 L~~L~Ls~N~-l~~lp-~~----~~L~~L~~L~Ls~N~-l~~l-p~~-l~~l~~~L~~L~Ls~N~-L~~lp~~~------ 638 (876)
T 4ecn_A 575 LGLLDCVHNK-VRHLE-AF----GTNVKLTDLKLDYNQ-IEEI-PED-FCAFTDQVEGLGFSHNK-LKYIPNIF------ 638 (876)
T ss_dssp CCEEECTTSC-CCBCC-CC----CTTSEESEEECCSSC-CSCC-CTT-SCEECTTCCEEECCSSC-CCSCCSCC------
T ss_pred CCEEECCCCC-cccch-hh----cCCCcceEEECcCCc-cccc-hHH-HhhccccCCEEECcCCC-CCcCchhh------
Confidence 6666666554 33332 22 345566666666653 3333 222 555555 6666666653 44444311
Q ss_pred CCCCCCCCccceEecCCCccccccccCCCcc--ccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhc
Q 009754 228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI--IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA 305 (526)
Q Consensus 228 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 305 (526)
.....++|+.|+++++.--..++...... ..+++|+.|++++| ++..++ ...
T Consensus 639 --~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp------------------~~~----- 692 (876)
T 4ecn_A 639 --NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP------------------TEL----- 692 (876)
T ss_dssp --CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCC------------------HHH-----
T ss_pred --hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccC------------------HHH-----
Confidence 11112336666666553222111111001 12335555555553 333222 110
Q ss_pred cccccccccCCCCCCccEEEecCCCCceEecccCChh----hhhhcccceeEeccCcCccccCCCCC--CCCCCCEEeec
Q 009754 306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES----NKAFANLESLEISECSKLQKLVPPSW--HLENLEALEVS 379 (526)
Q Consensus 306 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~----~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~ 379 (526)
...+++|+.|+++++ .++.++...+.. ...+++|+.|++++| .++.+|..+. .+++|+.|+++
T Consensus 693 ---------~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 693 ---------FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp ---------HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECC
T ss_pred ---------HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeC
Confidence 013478999999885 466666554321 123458999999887 5668887776 88999999999
Q ss_pred cccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccE
Q 009754 380 KCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQ 459 (526)
Q Consensus 380 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 459 (526)
++ .+..+|. .+..+++|+.|++++++.+..-.. .+.....+..+++|+.|++++| .++.+|... +++|++
T Consensus 762 ~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l--~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l----~~~L~~ 831 (876)
T 4ecn_A 762 YN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRI--LRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL----TPQLYI 831 (876)
T ss_dssp SS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBC--CCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CSSSCE
T ss_pred CC-CCCccch--hhhcCCCCCEEECCCCCCcccccc--cccChHHHhcCCCCCEEECCCC-CCCccCHhh----cCCCCE
Confidence 85 5666665 346889999999977431111000 0111112345789999999998 458888764 579999
Q ss_pred EEEcCCCCcee
Q 009754 460 VVVRQCPKMKI 470 (526)
Q Consensus 460 L~l~~C~~l~~ 470 (526)
|++++|+-...
T Consensus 832 LdLs~N~l~~i 842 (876)
T 4ecn_A 832 LDIADNPNISI 842 (876)
T ss_dssp EECCSCTTCEE
T ss_pred EECCCCCCCcc
Confidence 99998865543
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=9.8e-23 Score=220.37 Aligned_cols=452 Identities=15% Similarity=0.129 Sum_probs=212.3
Q ss_pred ccceeEEeeccCceeeccc-ccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCc
Q 009754 3 FLLFYFFNIHTHAHTFAYF-QVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY 80 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (526)
+++|++|+++.+......+ .++.+++|++|+++++ .+..++. .+++ +++|++|+++++. ++......
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--------l~~L~~L~Ls~n~-l~~~~~~~- 140 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK--------QKNLITLDLSHNG-LSSTKLGT- 140 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT--------CTTCCEEECCSSC-CSCCCCCS-
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccc--------cCCCCEEECCCCc-ccccCchh-
Confidence 5789999999876554333 4899999999999996 6777764 4555 8899999998763 44443332
Q ss_pred eecCCCccEEEecCCCCccccccC---cccCCCeeeEEecccccc-------------cceeeecccc-chhhHHhhhhh
Q 009754 81 TLEFPSLERVSMTHCPNMKTFSHG---ILSTPKLHKVQVTEKEEG-------------ELHHWEGNKL-NSTIQKCYEEM 143 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~~L~~L~l~~~~~~-------------~~~~~~~~~~-~~~~~~l~~~~ 143 (526)
...+++|++|+++++. ++.++.. ....++|++|+++++.-. ..+...+... ......++..+
T Consensus 141 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l 219 (680)
T 1ziw_A 141 QVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219 (680)
T ss_dssp SSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH
T ss_pred hcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh
Confidence 3468888888888874 4443322 223577888888754211 0000000000 00111111111
Q ss_pred cCCCCCcEEEeecCCCCceeccCCCCCcCCC--CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc-c
Q 009754 144 IGFRDMEYLQLSYFPHLKEIWHGQALPVSFF--NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH-L 220 (526)
Q Consensus 144 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~ 220 (526)
..++|+.|+++++. ++...... + ..+ ++|++|++++|. ++.+++. .++.+++|++|++++|......+. +
T Consensus 220 -~~~~L~~L~L~~n~-l~~~~~~~-~--~~l~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 220 -ANTSIRNLSLSNSQ-LSTTSNTT-F--LGLKWTNLTMLDLSYNN-LNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp -TTSCCCEEECTTSC-CCEECTTT-T--GGGGGSCCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSCCBSEECTTTT
T ss_pred -hhccccEEEccCCc-ccccChhH-h--hccCcCCCCEEECCCCC-cCccCcc-cccCcccccEeeCCCCccCccChhhh
Confidence 23556666665553 22111000 0 111 235555555552 2222221 144555555555555422111111 0
Q ss_pred c----------------------ccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCC-CCcc
Q 009754 221 E----------------------EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP-DMET 277 (526)
Q Consensus 221 ~----------------------~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~ 277 (526)
. ............+++|+.|+++++. +..++ ...+..+++|++|++++|. .+..
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK--SNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC--TTTTTTCTTCCEEECTTCBSCCCE
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC--hhHhccccCCcEEECCCCchhhhh
Confidence 0 0000000123445566666665542 23221 1114456666666666542 1111
Q ss_pred cc--------CcccceeeecCCCCccccc--------hhhhhhc-ccccc-c-cccCCCCCCccEEEecCCCCceEeccc
Q 009754 278 FI--------SNSVVHVTTDNKEPQKLTS--------EENFLLA-HQVQP-L-FDEKVSFPRLRWLELSGLHKVQHLWKE 338 (526)
Q Consensus 278 ~~--------~~~L~~L~i~~~~~~~~~~--------~~~~~~~-~~~~~-~-~~~~~~~~~L~~L~l~~~~~l~~l~~~ 338 (526)
.+ ...++.++++++.+..+.. +..+... ..+.. . ......+++|+.|+++++. +..+...
T Consensus 370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 448 (680)
T 1ziw_A 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN 448 (680)
T ss_dssp ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTT
T ss_pred cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChh
Confidence 11 1345556666555443221 0000000 00100 0 0123345566666666542 3333333
Q ss_pred CChhhhhhcccceeEeccCcC--ccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeecc
Q 009754 339 NDESNKAFANLESLEISECSK--LQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQL 416 (526)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 416 (526)
.+ ..+++|+.|+++++.. +..+|..+..+++|+.|+++++ .++.++.. .+..+++|++|+++++ .++.+...
T Consensus 449 ~~---~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~ 522 (680)
T 1ziw_A 449 SF---ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDD-MLEGLEKLEILDLQHN-NLARLWKH 522 (680)
T ss_dssp TT---TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCGGGGST
T ss_pred hh---hcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChh-hhccccccCEEeCCCC-Cccccchh
Confidence 22 4456666666665432 2345666677777777777774 45555543 2356677777777765 23332110
Q ss_pred CC-cccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEe
Q 009754 417 QV-GEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNV 486 (526)
Q Consensus 417 ~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l 486 (526)
.- +........+++|+.|+++++ .++.++.+... .+++|++|++++ .+++.+|.. +..+++|+.|++
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFK-DLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred hccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcc-cccCcceeECCC-CCCCcCCHhHhCCCCCCCEEEC
Confidence 00 000001123455555555554 34444443211 245555555543 244444432 223344444444
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=6.4e-23 Score=221.82 Aligned_cols=438 Identities=15% Similarity=0.128 Sum_probs=205.2
Q ss_pred ccceeEEeeccCceeeccc-ccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCc
Q 009754 3 FLLFYFFNIHTHAHTFAYF-QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY 80 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (526)
.++++.|+++........+ .++.+++|++|+++++ .+..+ |..+.+ +++|++|+++++ .++..+...
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--------l~~L~~L~L~~n-~l~~l~~~~- 92 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQK--------LPMLKVLNLQHN-ELSQLSDKT- 92 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHH--------CTTCCEEECCSS-CCCCCCTTT-
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhc--------ccCcCEEECCCC-ccCccChhh-
Confidence 3577888888765444333 4778888888888885 56665 333444 677777777764 355444332
Q ss_pred eecCCCccEEEecCCCCccccc-cCcccCCCeeeEEecccccc-------------cceeeeccccchhhHHhh-hh--h
Q 009754 81 TLEFPSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEG-------------ELHHWEGNKLNSTIQKCY-EE--M 143 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~~~~~-------------~~~~~~~~~~~~~~~~l~-~~--~ 143 (526)
...+++|++|++++|. ++.++ ..+..+++|++|+++++.-. ..+...+ +.+..++ .. .
T Consensus 93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN----NKIQALKSEELDI 167 (680)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS----SCCCCBCHHHHGG
T ss_pred hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC----CcccccCHHHhhc
Confidence 2357777777777774 44444 34556777777777642110 0000000 0111111 00 1
Q ss_pred cCCCCCcEEEeecCCCCceeccC-C-CCCc----------------------CCCCCccEEEEecCCCcccCCChHHHhc
Q 009754 144 IGFRDMEYLQLSYFPHLKEIWHG-Q-ALPV----------------------SFFNNLARLVVDDCTNMSSAIPANLLRC 199 (526)
Q Consensus 144 ~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~----------------------~~l~~L~~L~l~~c~~l~~~~~~~~l~~ 199 (526)
..+++|+.|+++++. ++..... . .++. ...++|++|+++++. ++...+.. +..
T Consensus 168 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~-~~~ 244 (680)
T 1ziw_A 168 FANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTT-FLG 244 (680)
T ss_dssp GTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTT-TGG
T ss_pred cccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhH-hhc
Confidence 123445555554442 1111000 0 0000 001334444444442 22221211 333
Q ss_pred CC--CCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCC---
Q 009754 200 LN--NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPD--- 274 (526)
Q Consensus 200 l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~--- 274 (526)
++ +|++|++++|. +..++.. .++.+++|+.|+++++. +.... ...+..+++|+.|+++++..
T Consensus 245 l~~~~L~~L~Ls~n~-l~~~~~~---------~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNN-LNVVGND---------SFAWLPQLEYFFLEYNN-IQHLF--SHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp GGGSCCCEEECTTSC-CCEECTT---------TTTTCTTCCEEECCSCC-BSEEC--TTTTTTCTTCCEEECTTCBCCC-
T ss_pred cCcCCCCEEECCCCC-cCccCcc---------cccCcccccEeeCCCCc-cCccC--hhhhcCCCCccEEeccchhhhcc
Confidence 32 25555555552 2222110 34455666666666643 22221 11144566666666654311
Q ss_pred -----Cccc------cCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCC-CceEecccCChh
Q 009754 275 -----METF------ISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH-KVQHLWKENDES 342 (526)
Q Consensus 275 -----l~~~------~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~l~~~~~~~ 342 (526)
+..+ ...+++.++++++.+..+.. .....+++|+.|+++++. .+..++...+..
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~--------------~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS--------------NMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCT--------------TTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCCh--------------hHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 0000 02345555555554443221 112344566666666542 123333222110
Q ss_pred hhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeec-------
Q 009754 343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQ------- 415 (526)
Q Consensus 343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~------- 415 (526)
...++|+.|++++|......+..+..+++|++|+++++.-...++.. ....+++|++|++++|. +..+..
T Consensus 378 -~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~ 454 (680)
T 1ziw_A 378 -LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ-EWRGLENIFEIYLSYNK-YLQLTRNSFALVP 454 (680)
T ss_dssp -GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG-GGTTCTTCCEEECCSCS-EEECCTTTTTTCT
T ss_pred -cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc-cccCcccccEEecCCCC-cceeChhhhhcCc
Confidence 11235566666555432233445555666666666664322223322 22455566666665542 222111
Q ss_pred -------cCC-----cccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC---------C
Q 009754 416 -------LQV-----GEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ---------G 474 (526)
Q Consensus 416 -------~~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~---------~ 474 (526)
.+. +........+++|+.|+++++ .++.++..... .+++|++|+++++ .++.++. .
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLE-GLEKLEILDLQHN-NLARLWKHANPGGPIYF 531 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCGGGGSTTSTTSCCCT
T ss_pred ccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhc-cccccCEEeCCCC-CccccchhhccCCcchh
Confidence 000 011112234677777777775 46666554322 3778888888775 4444321 1
Q ss_pred CCCCCCcceEEeeccCCC
Q 009754 475 VLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 475 ~~~~~~L~~l~l~~~~~~ 492 (526)
+..+++|+.|+++++++.
T Consensus 532 ~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFD 549 (680)
T ss_dssp TTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCCCC
Confidence 345677888888766665
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=3e-23 Score=218.70 Aligned_cols=429 Identities=15% Similarity=0.164 Sum_probs=237.4
Q ss_pred cceeEEeeccCceeecccccCCcCCCceEEecccccccEec-cccccccccccccccccceeeeccccccccccccCcee
Q 009754 4 LLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (526)
Q Consensus 4 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (526)
+...+-|++...... +|. +..++|++|+++++ .+..++ ..+.+ +++|++|+++++ .++...... ..
T Consensus 5 ~~~~~c~~~~~~l~~-ip~-~~~~~L~~L~Ls~n-~l~~~~~~~~~~--------l~~L~~L~Ls~n-~i~~~~~~~-~~ 71 (549)
T 2z81_A 5 DASGVCDGRSRSFTS-IPS-GLTAAMKSLDLSFN-KITYIGHGDLRA--------CANLQVLILKSS-RINTIEGDA-FY 71 (549)
T ss_dssp CTTSEEECTTSCCSS-CCS-CCCTTCCEEECCSS-CCCEECSSTTSS--------CTTCCEEECTTS-CCCEECTTT-TT
T ss_pred CCCceEECCCCcccc-ccc-cCCCCccEEECcCC-ccCccChhhhhc--------CCcccEEECCCC-CcCccChhh-cc
Confidence 334444444433333 332 23489999999997 688874 45665 899999999986 455555443 34
Q ss_pred cCCCccEEEecCCCCccccccC-cccCCCeeeEEecccccccceeeeccccchhhH--HhhhhhcCCCCCcEEEeecCCC
Q 009754 83 EFPSLERVSMTHCPNMKTFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ--KCYEEMIGFRDMEYLQLSYFPH 159 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~ 159 (526)
.+++|++|++++|. ++.++.. +..+++|++|+++++ .+. ..+..+..+++|++|+++++..
T Consensus 72 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n---------------~l~~~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 72 SLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN---------------PYQTLGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp TCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC---------------CCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred ccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC---------------cccccchhhhhhccCCccEEECCCCcc
Confidence 68999999999994 5555544 778999999999842 222 2344567889999999999875
Q ss_pred Cceecc-CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccc
Q 009754 160 LKEIWH-GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY 238 (526)
Q Consensus 160 l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~ 238 (526)
+..+.. .. ..+++|++|++++|. ++...+.. ++.+++|++|+++++. ...++.. ....+++|+
T Consensus 136 ~~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~l~~n~-~~~~~~~---------~~~~l~~L~ 199 (549)
T 2z81_A 136 FSEIRRIDF----AGLTSLNELEIKALS-LRNYQSQS-LKSIRDIHHLTLHLSE-SAFLLEI---------FADILSSVR 199 (549)
T ss_dssp CCEECTTTT----TTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEECSB-STTHHHH---------HHHSTTTBS
T ss_pred ccccCHhhh----hcccccCeeeccCCc-ccccChhh-hhccccCceEecccCc-ccccchh---------hHhhccccc
Confidence 555432 22 458899999999985 44433333 7889999999999884 4444431 123478888
Q ss_pred eEecCCCccccccccCC-CccccCCCcceEeeecCCCCcccc----------CcccceeeecCCCCccccch--------
Q 009754 239 GLRLIDLPKLKRFCNFT-GNIIELPELQHLTIQNCPDMETFI----------SNSVVHVTTDNKEPQKLTSE-------- 299 (526)
Q Consensus 239 ~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~----------~~~L~~L~i~~~~~~~~~~~-------- 299 (526)
.|+++++. +...+... .....+++|+.|+++++ .+.+.. ...++.+.++++...++...
T Consensus 200 ~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 277 (549)
T 2z81_A 200 YLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277 (549)
T ss_dssp EEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred EEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhh
Confidence 88888753 33321100 00224556666666553 222111 12334444444332211100
Q ss_pred ------hhhhhc-cccccc--ccc----CCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc---
Q 009754 300 ------ENFLLA-HQVQPL--FDE----KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL--- 363 (526)
Q Consensus 300 ------~~~~~~-~~~~~~--~~~----~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l--- 363 (526)
+.+... ..+... +.. ...+++|+.|+++++ .++.++...+ ..+++|+.|++++|.....+
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~---~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFS---QHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHH---HHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCHHHH---hcCccccEEEccCCccccccccc
Confidence 000000 000000 000 001245666666553 2444432221 34556666666555432222
Q ss_pred CCCCCCCCCCCEEeeccccCcccccc-chhhhhccCCceEEEecccCcceeeccCC-------------ccccccccccc
Q 009754 364 VPPSWHLENLEALEVSKCHGLINLLT-FSTSESLVNLGRMMIADCKMIEQIIQLQV-------------GEEAKDCNVFK 429 (526)
Q Consensus 364 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~-------------~~~~~~~~~~~ 429 (526)
+..+..+++|++|+++++ .++.++. ......+++|++|++++| +++.++..-. .........++
T Consensus 354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~ 431 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431 (549)
T ss_dssp HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCT
T ss_pred hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcC
Confidence 123445555556665554 3333321 112344555555555554 2333221000 00000001235
Q ss_pred ccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754 430 ELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 493 (526)
Q Consensus 430 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~ 493 (526)
+|++|+++++ .++.++. .+++|++|++++| +++.+|... .+++|+.|+++++++..
T Consensus 432 ~L~~L~Ls~N-~l~~~~~-----~l~~L~~L~Ls~N-~l~~ip~~~-~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 432 TLEVLDVSNN-NLDSFSL-----FLPRLQELYISRN-KLKTLPDAS-LFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TCSEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSSCCCGG-GCTTCCEEECCSSCCCC
T ss_pred CceEEECCCC-Chhhhcc-----cCChhcEEECCCC-ccCcCCCcc-cCccCCEEecCCCccCC
Confidence 6666666665 4444431 3889999999886 677888743 68899999998777754
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.2e-21 Score=214.31 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=136.1
Q ss_pred eEEeeccCceeecccccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCceecCC
Q 009754 7 YFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP 85 (526)
Q Consensus 7 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (526)
++.|++.+.. ..+|. ..+++++|+|+++ .+..+ |..+.+ +++|++|+++++.....+.... ...++
T Consensus 7 ~~~dcs~~~L-~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~--------l~~L~~LdLs~n~~~~~i~~~~-f~~L~ 73 (844)
T 3j0a_A 7 RIAFYRFCNL-TQVPQ--VLNTTERLLLSFN-YIRTVTASSFPF--------LEQLQLLELGSQYTPLTIDKEA-FRNLP 73 (844)
T ss_dssp EEEEESCCCS-SCCCS--SCTTCCEEEEESC-CCCEECSSSCSS--------CCSCSEEEECTTCCCCEECTTT-TSSCT
T ss_pred eEEEccCCCC-CCCCC--CCCCcCEEECCCC-cCCccChhHCcc--------cccCeEEeCCCCCCccccCHHH-hcCCC
Confidence 3556665544 44565 5799999999996 68877 556666 8999999999986665554443 45799
Q ss_pred CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhh--hcCCCCCcEEEeecCCCCcee
Q 009754 86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE--MIGFRDMEYLQLSYFPHLKEI 163 (526)
Q Consensus 86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~ 163 (526)
+|+.|++++|..-...|..+..+++|++|+++++ .....++.. +..+++|++|+++++. ++..
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n--------------~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~ 138 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC--------------GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSL 138 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC--------------CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCC
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCC--------------CCCcccccCccccccCCCCEEECCCCc-cccc
Confidence 9999999999644445778888999999999942 111122332 6688999999999986 3322
Q ss_pred ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcC--CCCCeeeeccccccchhccccccccccCCCCCCCC------
Q 009754 164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL--NNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP------ 235 (526)
Q Consensus 164 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~------ 235 (526)
.... ....+++|++|+++++. ++...+.. +..+ ++|+.|++++|......+. ..+.++
T Consensus 139 ~~~~--~~~~L~~L~~L~Ls~N~-i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~----------~~~~~~~~~~~~ 204 (844)
T 3j0a_A 139 YLHP--SFGKLNSLKSIDFSSNQ-IFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSV----------DWGKCMNPFRNM 204 (844)
T ss_dssp CCCG--GGGTCSSCCEEEEESSC-CCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCC----------CCCSSSCTTTTC
T ss_pred ccch--hHhhCCCCCEEECCCCc-CCeeCHHH-cccccCCccceEECCCCcccccccc----------chhhcCCccccC
Confidence 1110 01568999999999984 44443433 5555 8999999999854443332 222222
Q ss_pred ccceEecCCCc
Q 009754 236 KLYGLRLIDLP 246 (526)
Q Consensus 236 ~L~~L~l~~~~ 246 (526)
+|+.|+++++.
T Consensus 205 ~L~~L~Ls~n~ 215 (844)
T 3j0a_A 205 VLEILDVSGNG 215 (844)
T ss_dssp CBSEEBCSSCC
T ss_pred ceeEEecCCCc
Confidence 48999998863
No 20
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3e-23 Score=212.43 Aligned_cols=234 Identities=18% Similarity=0.182 Sum_probs=137.2
Q ss_pred CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc
Q 009754 86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH 165 (526)
Q Consensus 86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (526)
++++|++++|. ++.+|. -.++|++|++++ +.+..++. .+++|+.|+++++. ++.+
T Consensus 72 ~l~~L~l~~~~-l~~lp~---~~~~L~~L~l~~---------------n~l~~lp~---~~~~L~~L~l~~n~-l~~l-- 126 (454)
T 1jl5_A 72 QAHELELNNLG-LSSLPE---LPPHLESLVASC---------------NSLTELPE---LPQSLKSLLVDNNN-LKAL-- 126 (454)
T ss_dssp TCSEEECTTSC-CSCCCS---CCTTCSEEECCS---------------SCCSSCCC---CCTTCCEEECCSSC-CSCC--
T ss_pred CCCEEEecCCc-cccCCC---CcCCCCEEEccC---------------CcCCcccc---ccCCCcEEECCCCc-cCcc--
Confidence 45778887774 666554 246777887772 22223332 23678888887764 3321
Q ss_pred CCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754 166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (526)
Q Consensus 166 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (526)
+ ...++|++|++++| .++.+ |. ++.+++|++|++++| .++.++. ..++|+.|+++++
T Consensus 127 ----~-~~~~~L~~L~L~~n-~l~~l-p~--~~~l~~L~~L~l~~N-~l~~lp~-------------~~~~L~~L~L~~n 183 (454)
T 1jl5_A 127 ----S-DLPPLLEYLGVSNN-QLEKL-PE--LQNSSFLKIIDVDNN-SLKKLPD-------------LPPSLEFIAAGNN 183 (454)
T ss_dssp ----C-SCCTTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS
T ss_pred ----c-CCCCCCCEEECcCC-CCCCC-cc--cCCCCCCCEEECCCC-cCcccCC-------------CcccccEEECcCC
Confidence 1 11267888888877 44555 32 778888888888877 4555443 2357888888776
Q ss_pred ccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccE
Q 009754 246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRW 323 (526)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 323 (526)
.++.++ . +..+++|++|++++| +++.++ +.+++.++++++....++. .+.+++|+.
T Consensus 184 -~l~~l~---~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~n~l~~lp~----------------~~~l~~L~~ 241 (454)
T 1jl5_A 184 -QLEELP---E-LQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPE----------------LQNLPFLTT 241 (454)
T ss_dssp -CCSSCC---C-CTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSSCCC----------------CTTCTTCCE
T ss_pred -cCCcCc---c-ccCCCCCCEEECCCC-cCCcCCCCcCcccEEECcCCcCCcccc----------------cCCCCCCCE
Confidence 455543 1 567788888888874 555544 4577778877776655442 124567777
Q ss_pred EEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEE
Q 009754 324 LELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMM 403 (526)
Q Consensus 324 L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 403 (526)
|+++++ .++.++ ..+++|+.|++++|. ++.+|.. +++|++|+++++ .++.++.. .++|+.|+
T Consensus 242 L~l~~N-~l~~l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~ 303 (454)
T 1jl5_A 242 IYADNN-LLKTLP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN-IFSGLSEL-----PPNLYYLN 303 (454)
T ss_dssp EECCSS-CCSSCC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSEESCC-----CTTCCEEE
T ss_pred EECCCC-cCCccc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCC-ccCcccCc-----CCcCCEEE
Confidence 777764 344433 223567777776653 4445433 256666666664 34443220 13455555
Q ss_pred Eecc
Q 009754 404 IADC 407 (526)
Q Consensus 404 i~~c 407 (526)
++++
T Consensus 304 l~~N 307 (454)
T 1jl5_A 304 ASSN 307 (454)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5443
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.9e-22 Score=207.91 Aligned_cols=348 Identities=15% Similarity=0.224 Sum_probs=191.1
Q ss_pred ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754 3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (526)
++.++.+++..+.. ..++.+..+++|++|++++| .+..+|. +.+ +++|++|++.++. ++.... ..
T Consensus 45 l~~l~~L~l~~~~i-~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~--------l~~L~~L~l~~n~-l~~~~~---~~ 109 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNN-QLTDITP-LKN--------LTKLVDILMNNNQ-IADITP---LA 109 (466)
T ss_dssp HHTCCEEECCSSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSSC-CCCCGG---GT
T ss_pred hccccEEecCCCCC-ccCcchhhhcCCCEEECCCC-ccCCchh-hhc--------cccCCEEECCCCc-cccChh---hc
Confidence 34556666654433 23455566666666666664 4555554 443 5666666666542 333222 23
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|++|++++| .++.++. +..+++|++|+++++ .+..++ .+..+++|+.|++++.. ..
T Consensus 110 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n---------------~l~~~~-~~~~l~~L~~L~l~~~~--~~ 169 (466)
T 1o6v_A 110 NLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSN---------------TISDIS-ALSGLTSLQQLSFGNQV--TD 169 (466)
T ss_dssp TCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEE---------------EECCCG-GGTTCTTCSEEEEEESC--CC
T ss_pred CCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCC---------------ccCCCh-hhccCCcccEeecCCcc--cC
Confidence 4666666666665 3444433 445566666666521 111111 24455666666665321 11
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
. .+...+++|++|++++|. ++.+ +. +..+++|++|++++|. +..++. .+.+++|+.|++
T Consensus 170 ~-----~~~~~l~~L~~L~l~~n~-l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~-----------~~~l~~L~~L~l 228 (466)
T 1o6v_A 170 L-----KPLANLTTLERLDISSNK-VSDI-SV--LAKLTNLESLIATNNQ-ISDITP-----------LGILTNLDELSL 228 (466)
T ss_dssp C-----GGGTTCTTCCEEECCSSC-CCCC-GG--GGGCTTCSEEECCSSC-CCCCGG-----------GGGCTTCCEEEC
T ss_pred c-----hhhccCCCCCEEECcCCc-CCCC-hh--hccCCCCCEEEecCCc-cccccc-----------ccccCCCCEEEC
Confidence 1 011345566666666553 3332 11 5556666666666552 322221 223556666666
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCcc
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR 322 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 322 (526)
+++. +++++. +..+++|++|++++| ++...++ ...+++|+
T Consensus 229 ~~n~-l~~~~~----l~~l~~L~~L~l~~n-~l~~~~~----------------------------------~~~l~~L~ 268 (466)
T 1o6v_A 229 NGNQ-LKDIGT----LASLTNLTDLDLANN-QISNLAP----------------------------------LSGLTKLT 268 (466)
T ss_dssp CSSC-CCCCGG----GGGCTTCSEEECCSS-CCCCCGG----------------------------------GTTCTTCS
T ss_pred CCCC-cccchh----hhcCCCCCEEECCCC-ccccchh----------------------------------hhcCCCCC
Confidence 6542 333211 445566666666654 2322211 12457888
Q ss_pred EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceE
Q 009754 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRM 402 (526)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 402 (526)
.|+++++ .++.++. . ..+++|+.|++++|. ++.++. +..+++|+.|++++| .+.+.+. ...+++|++|
T Consensus 269 ~L~l~~n-~l~~~~~-~----~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L 336 (466)
T 1o6v_A 269 ELKLGAN-QISNISP-L----AGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRL 336 (466)
T ss_dssp EEECCSS-CCCCCGG-G----TTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEE
T ss_pred EEECCCC-ccCcccc-c----cCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEe
Confidence 8888875 3444432 1 677888888888864 555543 677788888888886 4555543 3677888888
Q ss_pred EEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC
Q 009754 403 MIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ 473 (526)
Q Consensus 403 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~ 473 (526)
++++| .++.+.. ...+++|+.|++.+|+ +++++. .. .+++|++|++.+| .++.+|.
T Consensus 337 ~l~~n-~l~~~~~---------l~~l~~L~~L~l~~n~-l~~~~~-~~--~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 337 FFYNN-KVSDVSS---------LANLTNINWLSAGHNQ-ISDLTP-LA--NLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp ECCSS-CCCCCGG---------GTTCTTCCEEECCSSC-CCBCGG-GT--TCTTCCEEECCCE-EEECCCB
T ss_pred ECCCC-ccCCchh---------hccCCCCCEEeCCCCc-cCccch-hh--cCCCCCEEeccCC-cccCCch
Confidence 88887 3444321 2357888888888874 444433 22 3888888888775 3444443
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2.6e-22 Score=206.88 Aligned_cols=348 Identities=14% Similarity=0.192 Sum_probs=254.5
Q ss_pred CCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc
Q 009754 24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (526)
Q Consensus 24 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 103 (526)
..+++++.|+++++ .+..+|. +.. +++|++|+++++ .+++.+. ...+++|++|++++|. ++.++.
T Consensus 43 ~~l~~l~~L~l~~~-~i~~l~~-~~~--------l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~ 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKSIDG-VEY--------LNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADITP 107 (466)
T ss_dssp HHHHTCCEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGG
T ss_pred hHhccccEEecCCC-CCccCcc-hhh--------hcCCCEEECCCC-ccCCchh---hhccccCCEEECCCCc-cccChh
Confidence 44789999999997 6777774 444 899999999986 4555544 3478999999999984 555555
Q ss_pred CcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEe
Q 009754 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD 183 (526)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 183 (526)
+..+++|++|+++++ .+..++. +..+++|++|+++++. ++.+.. . ..+++|++|.+.
T Consensus 108 -~~~l~~L~~L~L~~n---------------~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~----~~l~~L~~L~l~ 164 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNN---------------QITDIDP-LKNLTNLNRLELSSNT-ISDISA-L----SGLTSLQQLSFG 164 (466)
T ss_dssp -GTTCTTCCEEECCSS---------------CCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-G----TTCTTCSEEEEE
T ss_pred -hcCCCCCCEEECCCC---------------CCCCChH-HcCCCCCCEEECCCCc-cCCChh-h----ccCCcccEeecC
Confidence 778999999999842 2233332 6688999999999875 333221 2 568999999997
Q ss_pred cCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCC
Q 009754 184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE 263 (526)
Q Consensus 184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 263 (526)
++ .....+ +..+++|++|++++|. +..++ ....+++|+.|+++++. +...+. +..+++
T Consensus 165 ~~--~~~~~~---~~~l~~L~~L~l~~n~-l~~~~-----------~l~~l~~L~~L~l~~n~-l~~~~~----~~~l~~ 222 (466)
T 1o6v_A 165 NQ--VTDLKP---LANLTTLERLDISSNK-VSDIS-----------VLAKLTNLESLIATNNQ-ISDITP----LGILTN 222 (466)
T ss_dssp ES--CCCCGG---GTTCTTCCEEECCSSC-CCCCG-----------GGGGCTTCSEEECCSSC-CCCCGG----GGGCTT
T ss_pred Cc--ccCchh---hccCCCCCEEECcCCc-CCCCh-----------hhccCCCCCEEEecCCc-cccccc----ccccCC
Confidence 53 444333 8899999999999984 55543 34568999999999874 444432 557899
Q ss_pred cceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhh
Q 009754 264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESN 343 (526)
Q Consensus 264 L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 343 (526)
|++|++++| +++..+ . ...+++|+.|+++++. ++.++. .
T Consensus 223 L~~L~l~~n-~l~~~~--~--------------------------------l~~l~~L~~L~l~~n~-l~~~~~-----~ 261 (466)
T 1o6v_A 223 LDELSLNGN-QLKDIG--T--------------------------------LASLTNLTDLDLANNQ-ISNLAP-----L 261 (466)
T ss_dssp CCEEECCSS-CCCCCG--G--------------------------------GGGCTTCSEEECCSSC-CCCCGG-----G
T ss_pred CCEEECCCC-Ccccch--h--------------------------------hhcCCCCCEEECCCCc-cccchh-----h
Confidence 999999986 444331 1 1245899999999864 444432 2
Q ss_pred hhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccc
Q 009754 344 KAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAK 423 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 423 (526)
..+++|+.|++++|. ++.++. +..+++|+.|+++++ .++.++. ...+++|+.|++++|. ++++..
T Consensus 262 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-------- 326 (466)
T 1o6v_A 262 SGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP-------- 326 (466)
T ss_dssp TTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG--------
T ss_pred hcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh--------
Confidence 778999999999874 566654 778899999999996 5666654 4788999999999984 444322
Q ss_pred ccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCCC
Q 009754 424 DCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDDD 494 (526)
Q Consensus 424 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~~ 494 (526)
...+++|+.|++.+| .++.++. .. .+++|++|++.+|.-....| ...+++|+.|+++++++...
T Consensus 327 -~~~l~~L~~L~l~~n-~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNN-KVSDVSS-LA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCGG-GT--TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred -hccCccCCEeECCCC-ccCCchh-hc--cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 146899999999998 5666642 22 38999999999986544444 44789999999977766543
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.5e-21 Score=200.59 Aligned_cols=82 Identities=12% Similarity=0.098 Sum_probs=54.4
Q ss_pred cCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccC
Q 009754 26 PSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG 104 (526)
Q Consensus 26 l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 104 (526)
.++|++|+++++ .+..+ |..+.+ +++|++|+++++.......... ...+++|++|++++|..-...|..
T Consensus 29 ~~~l~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~L~~n~~~~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 29 PAHVNYVDLSLN-SIAELNETSFSR--------LQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTSS--------CTTCCEEECCCCSTTCEECTTT-TTTCTTCCEEECTTCTTCEECTTT
T ss_pred CCccCEEEecCC-ccCcCChhHhcc--------CccccEEECcCCcccceECccc-ccccccCCEEeCCCCccCccChhh
Confidence 378899999886 67776 445555 7888888888765433333322 345788888888887533333555
Q ss_pred cccCCCeeeEEec
Q 009754 105 ILSTPKLHKVQVT 117 (526)
Q Consensus 105 ~~~~~~L~~L~l~ 117 (526)
+..+++|++|+++
T Consensus 99 ~~~l~~L~~L~L~ 111 (455)
T 3v47_A 99 FNGLANLEVLTLT 111 (455)
T ss_dssp TTTCTTCCEEECT
T ss_pred ccCcccCCEEeCC
Confidence 6667777777776
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=6.2e-22 Score=202.67 Aligned_cols=321 Identities=18% Similarity=0.120 Sum_probs=145.1
Q ss_pred cceeEEeeccCceeecccccCCcCCCceEEecccccccEecccccccccccc-----ccccccceeeecccccccccccc
Q 009754 4 LLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENR-----IAFSKLKVLILDYLPTLTSFCLE 78 (526)
Q Consensus 4 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~l~~~~~~ 78 (526)
..|+.++++...-...+..++.+++|++|++++|...+.+|..++++..... -...++++|+++++. +++++.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~- 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE- 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC-
Confidence 4577788876665443447999999999999997555577877765210000 000123556665542 333322
Q ss_pred CceecCCCccEEEecCCCCccccccCcccCCCeeeEEeccccc---------ccceeeeccccchhhHHhhhhhcCCCCC
Q 009754 79 NYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEE---------GELHHWEGNKLNSTIQKCYEEMIGFRDM 149 (526)
Q Consensus 79 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~L 149 (526)
..++|+.|+++++ .++.+|.. .++|++|+++++.- +..+... .+.+..++ .+..+++|
T Consensus 89 ----~~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~----~n~l~~lp-~~~~l~~L 155 (454)
T 1jl5_A 89 ----LPPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVS----NNQLEKLP-ELQNSSFL 155 (454)
T ss_dssp ----CCTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECC----SSCCSSCC-CCTTCTTC
T ss_pred ----CcCCCCEEEccCC-cCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECc----CCCCCCCc-ccCCCCCC
Confidence 1356666666665 34444422 34566666553210 0001111 11222333 35556666
Q ss_pred cEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCC
Q 009754 150 EYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEH 229 (526)
Q Consensus 150 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 229 (526)
++|+++++. ++.+ + ....+|++|++++| .++.+ |. ++.+++|++|++++| .++.++.
T Consensus 156 ~~L~l~~N~-l~~l------p-~~~~~L~~L~L~~n-~l~~l-~~--~~~l~~L~~L~l~~N-~l~~l~~---------- 212 (454)
T 1jl5_A 156 KIIDVDNNS-LKKL------P-DLPPSLEFIAAGNN-QLEEL-PE--LQNLPFLTAIYADNN-SLKKLPD---------- 212 (454)
T ss_dssp CEEECCSSC-CSCC------C-CCCTTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSSCCC----------
T ss_pred CEEECCCCc-Cccc------C-CCcccccEEECcCC-cCCcC-cc--ccCCCCCCEEECCCC-cCCcCCC----------
Confidence 666666654 3221 1 12346666666666 34444 22 566666666666666 3433332
Q ss_pred CCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccc
Q 009754 230 RGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQ 307 (526)
Q Consensus 230 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 307 (526)
..++|+.|+++++ .++.++. +..+++|++|+++++ +++.++ +.+++.++++++.+.+++.
T Consensus 213 ---~~~~L~~L~l~~n-~l~~lp~----~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~--------- 274 (454)
T 1jl5_A 213 ---LPLSLESIVAGNN-ILEELPE----LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPE--------- 274 (454)
T ss_dssp ---CCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCC---------
T ss_pred ---CcCcccEEECcCC-cCCcccc----cCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccccCc---------
Confidence 1246667776665 3444432 446667777777663 454433 3455555555555444321
Q ss_pred cccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccc
Q 009754 308 VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL 387 (526)
Q Consensus 308 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 387 (526)
.+++|+.|+++++ .++.++. ..++|+.|+++++. ++.++.. .++|++|+++++ .++.+
T Consensus 275 ---------~~~~L~~L~ls~N-~l~~l~~-------~~~~L~~L~l~~N~-l~~i~~~---~~~L~~L~Ls~N-~l~~l 332 (454)
T 1jl5_A 275 ---------LPQSLTFLDVSEN-IFSGLSE-------LPPNLYYLNASSNE-IRSLCDL---PPSLEELNVSNN-KLIEL 332 (454)
T ss_dssp ---------CCTTCCEEECCSS-CCSEESC-------CCTTCCEEECCSSC-CSEECCC---CTTCCEEECCSS-CCSCC
T ss_pred ---------ccCcCCEEECcCC-ccCcccC-------cCCcCCEEECcCCc-CCcccCC---cCcCCEEECCCC-ccccc
Confidence 1145556666553 2333321 12455555555542 3333211 135555555553 34443
Q ss_pred ccchhhhhccCCceEEEecc
Q 009754 388 LTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 388 ~~~~~~~~l~~L~~L~i~~c 407 (526)
|. .+++|++|+++++
T Consensus 333 p~-----~~~~L~~L~L~~N 347 (454)
T 1jl5_A 333 PA-----LPPRLERLIASFN 347 (454)
T ss_dssp CC-----CCTTCCEEECCSS
T ss_pred cc-----cCCcCCEEECCCC
Confidence 32 1355555655554
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.5e-21 Score=206.23 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=152.6
Q ss_pred CCccceEecCCCccccccccCCC--ccccCCCcceEeeecCCCCcccc---------CcccceeeecCCCCccccchhhh
Q 009754 234 FPKLYGLRLIDLPKLKRFCNFTG--NIIELPELQHLTIQNCPDMETFI---------SNSVVHVTTDNKEPQKLTSEENF 302 (526)
Q Consensus 234 l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~---------~~~L~~L~i~~~~~~~~~~~~~~ 302 (526)
.++|+.|+++++.--..+|.... ....++.|+.+++..+ .+ .++ ...++.++++++.......
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~-~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---- 348 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-VF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC---- 348 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC-CC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC----
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccc-ee-ecChhhhhhhhccCcceEEEccCCCcccccC----
Confidence 35899999998753334543320 0034555555555553 33 222 2458888888887654221
Q ss_pred hhccccccccccCCCCCCccEEEecCCCCceE-ecccCChhhhhhcccceeEeccCcCcccc---CCCCCCCCCCCEEee
Q 009754 303 LLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWKENDESNKAFANLESLEISECSKLQKL---VPPSWHLENLEALEV 378 (526)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~l 378 (526)
...+++|+.|+++++. ++. ++... ..+++|+.|+++++ .++.+ |..+..+++|++|++
T Consensus 349 ------------~~~l~~L~~L~l~~n~-l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 349 ------------PPSPSSFTFLNFTQNV-FTDSVFQGC----STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp ------------CSSCCCCCEEECCSSC-CCTTTTTTC----CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ------------ccCCCCceEEECCCCc-cccchhhhh----cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEEC
Confidence 1356899999999864 443 33222 77899999999997 45544 356788999999999
Q ss_pred ccccCccc-cccchhhhhccCCceEEEecccCcceeeccCCcccccccccc-cccceeecccccccceecCCCccCCCCC
Q 009754 379 SKCHGLIN-LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF-KELRYLELYCLPSLTSFCLGNYALEFPS 456 (526)
Q Consensus 379 ~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 456 (526)
+++. ++. ++.. ....+++|++|+++++. ++.... ..+ ++|+.|+++++ .++.+|.+... +++
T Consensus 411 ~~N~-l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~----------~~l~~~L~~L~L~~N-~l~~ip~~~~~--l~~ 474 (562)
T 3a79_B 411 SLNS-LNSHAYDR-TCAWAESILVLNLSSNM-LTGSVF----------RCLPPKVKVLDLHNN-RIMSIPKDVTH--LQA 474 (562)
T ss_dssp TTSC-CBSCCSSC-CCCCCTTCCEEECCSSC-CCGGGG----------SSCCTTCSEEECCSS-CCCCCCTTTTS--SCC
T ss_pred CCCc-CCCccChh-hhcCcccCCEEECCCCC-CCcchh----------hhhcCcCCEEECCCC-cCcccChhhcC--CCC
Confidence 9964 555 6653 34678999999999974 332111 123 69999999998 78899887765 999
Q ss_pred ccEEEEcCCCCceeccCC-CCCCCCcceEEeeccCCC
Q 009754 457 LKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 457 L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~~ 492 (526)
|++|+++++ +++.+|.. +..+++|+.++++++.+.
T Consensus 475 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 475 LQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 999999985 77789986 678899999999777664
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.5e-21 Score=199.93 Aligned_cols=318 Identities=15% Similarity=0.132 Sum_probs=184.8
Q ss_pred ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (526)
Q Consensus 20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 99 (526)
..+++.+++|++|+++++ .+..+| .+.. +++|++|+++++ .+++.+ ...+++|++|++++|. ++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~--------l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~-l~ 98 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMT-GIEK--------LTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNK-LT 98 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCT-TGGG--------CTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CS
T ss_pred ccChhHcCCCCEEEccCC-CcccCh-hhcc--------cCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCC-Cc
Confidence 446777889999999986 677776 4555 788888888875 355543 3467888888888874 55
Q ss_pred ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (526)
Q Consensus 100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 179 (526)
.++ +..+++|++|+++++ .+..++ +..+++|++|+++++. ++.+. ...+++|++
T Consensus 99 ~~~--~~~l~~L~~L~L~~N---------------~l~~l~--~~~l~~L~~L~l~~N~-l~~l~------l~~l~~L~~ 152 (457)
T 3bz5_A 99 NLD--VTPLTKLTYLNCDTN---------------KLTKLD--VSQNPLLTYLNCARNT-LTEID------VSHNTQLTE 152 (457)
T ss_dssp CCC--CTTCTTCCEEECCSS---------------CCSCCC--CTTCTTCCEEECTTSC-CSCCC------CTTCTTCCE
T ss_pred eee--cCCCCcCCEEECCCC---------------cCCeec--CCCCCcCCEEECCCCc-cceec------cccCCcCCE
Confidence 554 556777888888732 222222 4566777777777765 33321 145677777
Q ss_pred EEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccc
Q 009754 180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNII 259 (526)
Q Consensus 180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 259 (526)
|++++|..+..+ + +..+++|++|++++| .++.++ ...+++|+.|+++++ .++.++ +.
T Consensus 153 L~l~~n~~~~~~-~---~~~l~~L~~L~ls~n-~l~~l~------------l~~l~~L~~L~l~~N-~l~~~~-----l~ 209 (457)
T 3bz5_A 153 LDCHLNKKITKL-D---VTPQTQLTTLDCSFN-KITELD------------VSQNKLLNRLNCDTN-NITKLD-----LN 209 (457)
T ss_dssp EECTTCSCCCCC-C---CTTCTTCCEEECCSS-CCCCCC------------CTTCTTCCEEECCSS-CCSCCC-----CT
T ss_pred EECCCCCccccc-c---cccCCcCCEEECCCC-ccceec------------cccCCCCCEEECcCC-cCCeec-----cc
Confidence 777777655544 3 566777777777776 444442 345677777777765 344431 44
Q ss_pred cCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccC
Q 009754 260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN 339 (526)
Q Consensus 260 ~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 339 (526)
.+++|+.|+++++ +++.++ .+.+++|+.|+++++ .++.++.
T Consensus 210 ~l~~L~~L~Ls~N-~l~~ip-----------------------------------~~~l~~L~~L~l~~N-~l~~~~~-- 250 (457)
T 3bz5_A 210 QNIQLTFLDCSSN-KLTEID-----------------------------------VTPLTQLTYFDCSVN-PLTELDV-- 250 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCC-----------------------------------CTTCTTCSEEECCSS-CCSCCCC--
T ss_pred cCCCCCEEECcCC-cccccC-----------------------------------ccccCCCCEEEeeCC-cCCCcCH--
Confidence 6777777777774 444432 123466666766664 3443332
Q ss_pred ChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCc
Q 009754 340 DESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVG 419 (526)
Q Consensus 340 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 419 (526)
+.+++|+.|+++++ +|+.+++++|..+..+|. ..+++|+.|++++|+.++.++.....
T Consensus 251 ----~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 251 ----STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp ----TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred ----HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCCCc
Confidence 33455555544331 344555555544444432 34455666666555555444431111
Q ss_pred ccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCce
Q 009754 420 EEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMK 469 (526)
Q Consensus 420 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 469 (526)
.........++|+.|+++++ .++.++. . .+++|++|+++++ +++
T Consensus 309 L~~L~l~~~~~L~~L~L~~N-~l~~l~l--~--~l~~L~~L~l~~N-~l~ 352 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNT-ELTELDV--S--HNTKLKSLSCVNA-HIQ 352 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTC-CCSCCCC--T--TCTTCSEEECCSS-CCC
T ss_pred ceEechhhcccCCEEECCCC-ccccccc--c--cCCcCcEEECCCC-CCC
Confidence 11111122356666666654 4555432 2 2777777777663 444
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=209.93 Aligned_cols=400 Identities=15% Similarity=0.159 Sum_probs=245.8
Q ss_pred eEEeeccCceeecccccCCcCCCceEEecccccccEec-cccccccccccccccccceeeeccccccccccccCceecCC
Q 009754 7 YFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP 85 (526)
Q Consensus 7 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (526)
+++|++.......+..+. ++|++|+++++ .+..++ ..+.+ +++|++|+++++ .+++..+.. ...++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~-~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN-YISELWTSDILS--------LSKLRILIISHN-RIQYLDISV-FKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSS-CCCCCCHHHHTT--------CTTCCEEECCSS-CCCEEEGGG-GTTCT
T ss_pred ceEecCCCCccccccccc--ccccEEECCCC-cccccChhhccc--------cccccEEecCCC-ccCCcChHH-hhccc
Confidence 467888776554333344 89999999997 677775 45555 899999999986 455554433 34689
Q ss_pred CccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhH--HhhhhhcCCCCCcEEEeecCCCCcee
Q 009754 86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ--KCYEEMIGFRDMEYLQLSYFPHLKEI 163 (526)
Q Consensus 86 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~ 163 (526)
+|++|+++++ .++.+|.. .+++|++|++++ +.+. .++..+..+++|++|+++++. ++..
T Consensus 70 ~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~---------------N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~ 130 (520)
T 2z7x_B 70 ELEYLDLSHN-KLVKISCH--PTVNLKHLDLSF---------------NAFDALPICKEFGNMSQLKFLGLSTTH-LEKS 130 (520)
T ss_dssp TCCEEECCSS-CCCEEECC--CCCCCSEEECCS---------------SCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG
T ss_pred CCCEEecCCC-ceeecCcc--ccCCccEEeccC---------------CccccccchhhhccCCcceEEEecCcc-cchh
Confidence 9999999998 57788876 789999999983 2333 245677889999999999976 3321
Q ss_pred ccCCCCCcCCCCCc--cEEEEecCCC--cccCCChHHHhcCC-CCCeeeeccccccchhccccccccccCCCCCCCCccc
Q 009754 164 WHGQALPVSFFNNL--ARLVVDDCTN--MSSAIPANLLRCLN-NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY 238 (526)
Q Consensus 164 ~~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~ 238 (526)
.. ..+++| ++|++++|.. .... |.. +..+. ....++++++.....++.. ....+++|+
T Consensus 131 ~~------~~l~~L~L~~L~l~~n~l~~~~~~-~~~-l~~l~~~~l~l~l~~n~~~~~~~~~---------~~~~l~~L~ 193 (520)
T 2z7x_B 131 SV------LPIAHLNISKVLLVLGETYGEKED-PEG-LQDFNTESLHIVFPTNKEFHFILDV---------SVKTVANLE 193 (520)
T ss_dssp GG------GGGTTSCEEEEEEEECTTTTSSCC-TTT-TTTCCEEEEEEECCSSSCCCCCCCC---------CCTTCSEEE
T ss_pred hc------cccccceeeEEEeecccccccccc-ccc-ccccccceEEEEeccCcchhhhhhh---------hhhccccee
Confidence 11 346677 9999998854 2221 221 23322 1112333333222222110 223445555
Q ss_pred eEecCCCcc------ccccccCCCccccCC---------------------------CcceEeeecCCCCcc-cc-----
Q 009754 239 GLRLIDLPK------LKRFCNFTGNIIELP---------------------------ELQHLTIQNCPDMET-FI----- 279 (526)
Q Consensus 239 ~L~l~~~~~------l~~~~~~~~~~~~~~---------------------------~L~~L~l~~c~~l~~-~~----- 279 (526)
.|+++++.. +..... .+..++ +|++|++++| ++.+ .+
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~ 269 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV-KLQGQLDFRDFD 269 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE-EEESCCCCCCCC
T ss_pred eccccccccccccceeecchh---hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc-cccCccccchhh
Confidence 555444320 000000 023334 5555555553 2221 11
Q ss_pred -----CcccceeeecCCCCccccc--hhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhccccee
Q 009754 280 -----SNSVVHVTTDNKEPQKLTS--EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESL 352 (526)
Q Consensus 280 -----~~~L~~L~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L 352 (526)
...++.++++++.. .++. ..... .-++|+.|+++++. +..++. + ..+++|+.|
T Consensus 270 ~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~-------------~~~~L~~L~l~~n~-l~~~~~---~--~~l~~L~~L 329 (520)
T 2z7x_B 270 YSGTSLKALSIHQVVSDVF-GFPQSYIYEIF-------------SNMNIKNFTVSGTR-MVHMLC---P--SKISPFLHL 329 (520)
T ss_dssp CCSCCCCEEEEEEEEECCC-CSCTHHHHHHH-------------HTCCCSEEEEESSC-CCCCCC---C--SSCCCCCEE
T ss_pred cccccCceeEeccccccce-ecchhhhhccc-------------ccCceeEEEcCCCc-cccccc---h--hhCCcccEE
Confidence 12233334444333 2210 00000 01468888888754 333221 1 567899999
Q ss_pred EeccCcCccccCCCCCCCCCCCEEeeccccCccccccc-hhhhhccCCceEEEecccCcce-eeccCCcccccccccccc
Q 009754 353 EISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTF-STSESLVNLGRMMIADCKMIEQ-IIQLQVGEEAKDCNVFKE 430 (526)
Q Consensus 353 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~ 430 (526)
++++|..-..+|..+..+++|++|+++++ .++.++.. ..+..+++|++|+++++. ++. ++. + ....+++
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~---~----~~~~l~~ 400 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK---G----DCSWTKS 400 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG---C----SCCCCTT
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCccccc---c----hhccCcc
Confidence 99998654557888899999999999996 45543321 134788999999999874 444 432 1 1234689
Q ss_pred cceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCCC
Q 009754 431 LRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKDD 493 (526)
Q Consensus 431 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~~ 493 (526)
|+.|+++++.--..++... .++|++|++++| +++.+|.....+++|+.|+++++++..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL----PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC----CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCEEECcCCCCCcchhhhh----cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCc
Confidence 9999999985334444321 279999999986 777899876689999999998777753
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.1e-21 Score=198.95 Aligned_cols=343 Identities=11% Similarity=0.075 Sum_probs=230.9
Q ss_pred ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754 3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (526)
++.|+.|+++.+... .++.++.+++|++|+++++ .+..+| ++. +++|++|+++++. ++..+ ..
T Consensus 41 l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~--------l~~L~~L~Ls~N~-l~~~~----~~ 103 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSN-NITTLD--LSQ--------NTNLTYLACDSNK-LTNLD----VT 103 (457)
T ss_dssp HTTCCEEECCSSCCC-CCTTGGGCTTCSEEECCSS-CCSCCC--CTT--------CTTCSEEECCSSC-CSCCC----CT
T ss_pred cCCCCEEEccCCCcc-cChhhcccCCCCEEEccCC-cCCeEc--ccc--------CCCCCEEECcCCC-Cceee----cC
Confidence 578999999987544 4678999999999999997 688875 555 8999999999864 55553 34
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|++|+++++ .++.++ +..+++|++|+++++ .+..+ .+..+++|++|+++++..+..
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N---------------~l~~l--~l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN---------------TLTEI--DVSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS---------------CCSCC--CCTTCTTCCEEECTTCSCCCC
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC---------------cccee--ccccCCcCCEEECCCCCcccc
Confidence 6999999999999 566665 677899999999842 22222 256789999999999875655
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
+. . ..+++|++|++++| .++.+ + +..+++|++|++++| .++.+ .++.+++|+.|++
T Consensus 164 ~~--~----~~l~~L~~L~ls~n-~l~~l-~---l~~l~~L~~L~l~~N-~l~~~------------~l~~l~~L~~L~L 219 (457)
T 3bz5_A 164 LD--V----TPQTQLTTLDCSFN-KITEL-D---VSQNKLLNRLNCDTN-NITKL------------DLNQNIQLTFLDC 219 (457)
T ss_dssp CC--C----TTCTTCCEEECCSS-CCCCC-C---CTTCTTCCEEECCSS-CCSCC------------CCTTCTTCSEEEC
T ss_pred cc--c----ccCCcCCEEECCCC-cccee-c---cccCCCCCEEECcCC-cCCee------------ccccCCCCCEEEC
Confidence 42 2 45899999999998 56665 4 678999999999998 45554 3457899999999
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCccccCc---ccceeeecCCCCccccchhhhhhccccccccccCCCCC
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISN---SVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFP 319 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (526)
+++ .++.++ +..+++|+.|+++++ +++..++. .++.+.+++ .
T Consensus 220 s~N-~l~~ip-----~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l~~----------------------------n 264 (457)
T 3bz5_A 220 SSN-KLTEID-----VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHCIQ----------------------------T 264 (457)
T ss_dssp CSS-CCSCCC-----CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEECTT----------------------------C
T ss_pred cCC-cccccC-----ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEeccC----------------------------C
Confidence 996 456653 458899999999995 67665532 222332221 4
Q ss_pred CccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC--------CCCCCCCCEEeeccccCccccccch
Q 009754 320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP--------SWHLENLEALEVSKCHGLINLLTFS 391 (526)
Q Consensus 320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--------~~~l~~L~~L~l~~c~~l~~l~~~~ 391 (526)
+|+.|+++++.....++. +.+++|+.|++++|+.++.+|.. +...++|++|+++++ .++.++
T Consensus 265 ~L~~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--- 334 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--- 334 (457)
T ss_dssp CCSCCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC---
T ss_pred CCCEEECCCCccCCcccc------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc---
Confidence 666777777665665542 55688888888888766655531 233345555555543 333332
Q ss_pred hhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceec
Q 009754 392 TSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIF 471 (526)
Q Consensus 392 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~l 471 (526)
+..+++|+.|+++++ +++ .++.|..|.+... .+...+ . +..|+.+++++..--..+
T Consensus 335 -l~~l~~L~~L~l~~N-~l~---------------~l~~L~~L~l~~n-~l~g~~----~--~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNA-HIQ---------------DFSSVGKIPALNN-NFEAEG----Q--TITMPKETLTNNSLTIAV 390 (457)
T ss_dssp -CTTCTTCSEEECCSS-CCC---------------BCTTGGGSSGGGT-SEEEEE----E--EEECCCBCCBTTBEEEEC
T ss_pred -cccCCcCcEEECCCC-CCC---------------CccccccccccCC-cEEecc----e--eeecCccccccCcEEEEc
Confidence 244555666666553 222 1344555554442 232221 1 455667777663323367
Q ss_pred cCCC
Q 009754 472 SQGV 475 (526)
Q Consensus 472 p~~~ 475 (526)
|..+
T Consensus 391 p~~~ 394 (457)
T 3bz5_A 391 SPDL 394 (457)
T ss_dssp CTTC
T ss_pred ChhH
Confidence 7643
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.1e-21 Score=194.33 Aligned_cols=309 Identities=16% Similarity=0.202 Sum_probs=214.8
Q ss_pred cccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCc
Q 009754 19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM 98 (526)
Q Consensus 19 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 98 (526)
.+..+..+++|++|+++++ .+..++. +.. +++|++|+++++ .+++.+. ...+++|++|++++| .+
T Consensus 36 ~~~~~~~l~~L~~L~l~~~-~i~~~~~-~~~--------~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i 100 (347)
T 4fmz_A 36 DVVTQEELESITKLVVAGE-KVASIQG-IEY--------LTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KI 100 (347)
T ss_dssp SEECHHHHTTCSEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CC
T ss_pred CcccchhcccccEEEEeCC-ccccchh-hhh--------cCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cc
Confidence 3455667889999999986 6777764 444 888999999876 4555543 346889999999988 46
Q ss_pred cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc
Q 009754 99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA 178 (526)
Q Consensus 99 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 178 (526)
+.++ .+..+++|++|+++++ .+..++. +..+++|+.|+++++..+..... . ..+++|+
T Consensus 101 ~~~~-~~~~l~~L~~L~l~~n---------------~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~----~~l~~L~ 158 (347)
T 4fmz_A 101 TDIS-ALQNLTNLRELYLNED---------------NISDISP-LANLTKMYSLNLGANHNLSDLSP-L----SNMTGLN 158 (347)
T ss_dssp CCCG-GGTTCTTCSEEECTTS---------------CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-G----TTCTTCC
T ss_pred cCch-HHcCCCcCCEEECcCC---------------cccCchh-hccCCceeEEECCCCCCcccccc-h----hhCCCCc
Confidence 6654 4667888888888832 2233333 56788888888888865553322 2 4578888
Q ss_pred EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCcc
Q 009754 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI 258 (526)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 258 (526)
+|++++|. +....+ +..+++|++|++++| .+..++. ...+++|+.|+++++ .+..++. +
T Consensus 159 ~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-----------~~~l~~L~~L~l~~n-~l~~~~~----~ 217 (347)
T 4fmz_A 159 YLTVTESK-VKDVTP---IANLTDLYSLSLNYN-QIEDISP-----------LASLTSLHYFTAYVN-QITDITP----V 217 (347)
T ss_dssp EEECCSSC-CCCCGG---GGGCTTCSEEECTTS-CCCCCGG-----------GGGCTTCCEEECCSS-CCCCCGG----G
T ss_pred EEEecCCC-cCCchh---hccCCCCCEEEccCC-ccccccc-----------ccCCCccceeecccC-CCCCCch----h
Confidence 88888874 444433 778888999998887 4544432 345788888888886 3444332 5
Q ss_pred ccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEeccc
Q 009754 259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE 338 (526)
Q Consensus 259 ~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 338 (526)
..+++|++|++++| +++..++ ...+++|+.|+++++ .++.++ .
T Consensus 218 ~~~~~L~~L~l~~n-~l~~~~~----------------------------------~~~l~~L~~L~l~~n-~l~~~~-~ 260 (347)
T 4fmz_A 218 ANMTRLNSLKIGNN-KITDLSP----------------------------------LANLSQLTWLEIGTN-QISDIN-A 260 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG----------------------------------GTTCTTCCEEECCSS-CCCCCG-G
T ss_pred hcCCcCCEEEccCC-ccCCCcc----------------------------------hhcCCCCCEEECCCC-ccCCCh-h
Confidence 57888888888885 4444321 134589999999886 455442 1
Q ss_pred CChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCC
Q 009754 339 NDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQV 418 (526)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 418 (526)
...+++|+.|++++| .++.+ +.+..+++|++|++++| .+...+.. .+..+++|++|++++|+ ++.+..
T Consensus 261 ----~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~--- 328 (347)
T 4fmz_A 261 ----VKDLTKLKMLNVGSN-QISDI-SVLNNLSQLNSLFLNNN-QLGNEDME-VIGGLTNLTTLFLSQNH-ITDIRP--- 328 (347)
T ss_dssp ----GTTCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCGGGHH-HHHTCTTCSEEECCSSS-CCCCGG---
T ss_pred ----HhcCCCcCEEEccCC-ccCCC-hhhcCCCCCCEEECcCC-cCCCcChh-HhhccccCCEEEccCCc-cccccC---
Confidence 277889999999987 46666 35778899999999997 45554443 34678999999999985 544422
Q ss_pred cccccccccccccceeeccccc
Q 009754 419 GEEAKDCNVFKELRYLELYCLP 440 (526)
Q Consensus 419 ~~~~~~~~~~~~L~~L~l~~c~ 440 (526)
...+++|++|++++++
T Consensus 329 ------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 ------LASLSKMDSADFANQV 344 (347)
T ss_dssp ------GGGCTTCSEESSSCC-
T ss_pred ------hhhhhccceeehhhhc
Confidence 1458999999998874
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=7.3e-21 Score=195.56 Aligned_cols=376 Identities=12% Similarity=0.129 Sum_probs=232.6
Q ss_pred eEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc-cCcccCC
Q 009754 31 NLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGILSTP 109 (526)
Q Consensus 31 ~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~ 109 (526)
.++.+++ .+..+|. + .++|++|+++++ .+++..... ...+++|++|+++++.....++ ..+..++
T Consensus 14 ~~~c~~~-~l~~lp~-l----------~~~l~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 14 NAICINR-GLHQVPE-L----------PAHVNYVDLSLN-SIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp EEECCSS-CCSSCCC-C----------CTTCCEEECCSS-CCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred ccCcCCC-CcccCCC-C----------CCccCEEEecCC-ccCcCChhH-hccCccccEEECcCCcccceECcccccccc
Confidence 4555553 6677775 2 468999999975 455554433 4579999999999996544553 4466789
Q ss_pred CeeeEEecccccccceeeeccccchhhHHh-hhhhcCCCCCcEEEeecCCCCce-eccCCCCCcCCCCCccEEEEecCCC
Q 009754 110 KLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKE-IWHGQALPVSFFNNLARLVVDDCTN 187 (526)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~ 187 (526)
+|++|++++ +.+..+ +..+..+++|++|+++++. ++. ..... ....+++|++|++++|.
T Consensus 80 ~L~~L~Ls~---------------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~~~l~~L~~L~L~~n~- 140 (455)
T 3v47_A 80 SLIILKLDY---------------NQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGN--FFKPLTSLEMLVLRDNN- 140 (455)
T ss_dssp TCCEEECTT---------------CTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSS--TTTTCTTCCEEECCSSB-
T ss_pred cCCEEeCCC---------------CccCccChhhccCcccCCEEeCCCCC-CCccccCcc--cccCcccCCEEECCCCc-
Confidence 999999983 233333 5667788999999999886 332 11110 01457899999999984
Q ss_pred cccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCC--CCccceEecCCCccccccccCCC------ccc
Q 009754 188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPL--FPKLYGLRLIDLPKLKRFCNFTG------NII 259 (526)
Q Consensus 188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~l~~~~~~~~------~~~ 259 (526)
++.+.+...+..+++|++|++++|. +..++.. .... .++|+.|+++++. +..++.... ...
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEE---------DLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTT---------TSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTT
T ss_pred cCccCcccccCCCCcccEEeCCCCc-ccccChh---------hhhccccccccccccccCc-ccccchhhcccccccccc
Confidence 5555465557889999999999884 4333210 1222 2688889888864 343322110 123
Q ss_pred cCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE-----
Q 009754 260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH----- 334 (526)
Q Consensus 260 ~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----- 334 (526)
.+++|++|++++| ++....+..+. .....++|+.|+++++.....
T Consensus 210 ~~~~L~~L~Ls~n-~l~~~~~~~~~-----------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 210 KNTSITTLDLSGN-GFKESMAKRFF-----------------------------DAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp TTCEEEEEECTTS-CCCHHHHHHHH-----------------------------HHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccceeeeEecCCC-cccccchhhhh-----------------------------ccccccceeeEeeccccccccccchh
Confidence 5578888888885 44432211100 001124556666554422111
Q ss_pred ----ecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCc
Q 009754 335 ----LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI 410 (526)
Q Consensus 335 ----l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 410 (526)
.....+. ....++|+.|+++++......|..+..+++|++|+++++ .+..++.. .+..+++|++|+++++ .+
T Consensus 260 ~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l 335 (455)
T 3v47_A 260 NFKDPDNFTFK-GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQN-FL 335 (455)
T ss_dssp SSCCCCTTTTG-GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CC
T ss_pred hhccCcccccc-cccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCC-cc
Confidence 1100010 022367888888887654455667777888888888875 45555443 2366788888888876 45
Q ss_pred ceeeccCCcccccccccccccceeecccccccceec-CCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEeec
Q 009754 411 EQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFC-LGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTE 488 (526)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~ 488 (526)
+.+... ....+++|++|+++++ .++.+. ..... +++|++|+++++ +++.+|.. +..+++|+.|++++
T Consensus 336 ~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 336 GSIDSR-------MFENLDKLEVLDLSYN-HIRALGDQSFLG--LPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CEECGG-------GGTTCTTCCEEECCSS-CCCEECTTTTTT--CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCcChh-------HhcCcccCCEEECCCC-cccccChhhccc--cccccEEECCCC-ccccCCHhHhccCCcccEEEccC
Confidence 544320 1234688888888887 456553 33333 788888888874 56666653 45678888888877
Q ss_pred cCCCCCc
Q 009754 489 EEKDDDE 495 (526)
Q Consensus 489 ~~~~~~~ 495 (526)
+++....
T Consensus 405 N~l~~~~ 411 (455)
T 3v47_A 405 NPWDCSC 411 (455)
T ss_dssp SCBCCCT
T ss_pred CCcccCC
Confidence 7766443
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.2e-20 Score=186.88 Aligned_cols=302 Identities=14% Similarity=0.201 Sum_probs=225.8
Q ss_pred ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754 3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (526)
+++++.++++++... .++.++.+++|++|++++| .+..++. +.. +++|++|++.++ .+++++. ..
T Consensus 43 l~~L~~L~l~~~~i~-~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~--------l~~L~~L~L~~n-~i~~~~~---~~ 107 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGN-QITDISP-LSN--------LVKLTNLYIGTN-KITDISA---LQ 107 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSS-CCCCCGG---GT
T ss_pred cccccEEEEeCCccc-cchhhhhcCCccEEEccCC-ccccchh-hhc--------CCcCCEEEccCC-cccCchH---Hc
Confidence 578999999986654 4677999999999999997 7888876 555 899999999986 4555432 45
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|++|++++|. ++.++. +..+++|++|+++++. .... ...+..+++|++|+++++. +..
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~--------------~~~~-~~~~~~l~~L~~L~l~~~~-~~~ 169 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANH--------------NLSD-LSPLSNMTGLNYLTVTESK-VKD 169 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCT--------------TCCC-CGGGTTCTTCCEEECCSSC-CCC
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCC--------------Cccc-ccchhhCCCCcEEEecCCC-cCC
Confidence 79999999999984 666654 6779999999999532 1122 2236688999999999986 332
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
... . ..+++|++|++++|. ++.+.+ +..+++|++|++++| .+..++. ...+++|+.|++
T Consensus 170 ~~~-~----~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-----------~~~~~~L~~L~l 228 (347)
T 4fmz_A 170 VTP-I----ANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN-QITDITP-----------VANMTRLNSLKI 228 (347)
T ss_dssp CGG-G----GGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG-----------GGGCTTCCEEEC
T ss_pred chh-h----ccCCCCCEEEccCCc-cccccc---ccCCCccceeecccC-CCCCCch-----------hhcCCcCCEEEc
Confidence 221 2 568999999999984 555533 789999999999998 4554432 346899999999
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCcc
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR 322 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 322 (526)
+++ .++.++. +..+++|++|++++| +++..+ . ...+++|+
T Consensus 229 ~~n-~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~--~--------------------------------~~~l~~L~ 268 (347)
T 4fmz_A 229 GNN-KITDLSP----LANLSQLTWLEIGTN-QISDIN--A--------------------------------VKDLTKLK 268 (347)
T ss_dssp CSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCCG--G--------------------------------GTTCTTCC
T ss_pred cCC-ccCCCcc----hhcCCCCCEEECCCC-ccCCCh--h--------------------------------HhcCCCcC
Confidence 997 4555543 568999999999996 444431 1 13458999
Q ss_pred EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceE
Q 009754 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRM 402 (526)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 402 (526)
.|+++++ .++.++ ....+++|+.|++++|......+..+..+++|++|++++|+ ++.+++ ...+++|++|
T Consensus 269 ~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L 338 (347)
T 4fmz_A 269 MLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSA 338 (347)
T ss_dssp EEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEE
T ss_pred EEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhcccee
Confidence 9999986 455542 12788999999999986444445567788999999999975 666654 4678999999
Q ss_pred EEeccc
Q 009754 403 MIADCK 408 (526)
Q Consensus 403 ~i~~c~ 408 (526)
++++|+
T Consensus 339 ~l~~N~ 344 (347)
T 4fmz_A 339 DFANQV 344 (347)
T ss_dssp SSSCC-
T ss_pred ehhhhc
Confidence 998874
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=8.4e-21 Score=191.02 Aligned_cols=305 Identities=14% Similarity=0.128 Sum_probs=223.8
Q ss_pred CcCCCceEEecccccccEecccc-ccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc-
Q 009754 25 IPSSLVNLNVSRCDKIEEIIRHV-GEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS- 102 (526)
Q Consensus 25 ~l~~L~~L~L~~c~~l~~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~- 102 (526)
.+++++.|+++++ .++.+|..+ .+ +++|++|++.++. +++..... ...+++|++|+++++. ++.++
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~--------l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDS--------FRQVELLNLNDLQ-IEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPP 110 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHH--------CCCCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CCCCCT
T ss_pred ccCCceEEEecCC-chhhCChhHhcc--------cccCcEEECCCCc-ccccChhh-ccCCCCcCEEECCCCC-CCcCCH
Confidence 4799999999996 799998763 33 8899999999864 55554433 3468999999999985 55554
Q ss_pred cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhh-hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEE
Q 009754 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV 181 (526)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 181 (526)
..+..+++|++|++++ +.+..++.. +..+++|++|+++++. ++.+.... ...+++|++|+
T Consensus 111 ~~~~~l~~L~~L~L~~---------------n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~ 171 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLER---------------NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT---FQATTSLQNLQ 171 (390)
T ss_dssp TTTTTCTTCCEEECCS---------------SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT---TSSCTTCCEEE
T ss_pred HHhcCCCCCCEEECCC---------------CccCcCCHHHhcCCCCCcEEECCCCc-cCccChhh---ccCCCCCCEEE
Confidence 4467799999999983 344456554 4678999999999886 44332111 14579999999
Q ss_pred EecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC
Q 009754 182 VDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL 261 (526)
Q Consensus 182 l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 261 (526)
+++|. ++.+ + +..+++|++|++++| .++.++ ..++|+.|+++++ .+..++.. .+
T Consensus 172 l~~n~-l~~~-~---~~~l~~L~~L~l~~n-~l~~~~--------------~~~~L~~L~l~~n-~l~~~~~~-----~~ 225 (390)
T 3o6n_A 172 LSSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHN-SINVVRGP-----VN 225 (390)
T ss_dssp CCSSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCSSCSEEECCSS-CCCEEECC-----CC
T ss_pred CCCCc-CCcc-c---cccccccceeecccc-cccccC--------------CCCcceEEECCCC-eeeecccc-----cc
Confidence 99984 5544 3 678999999999988 444432 3468999999986 45555332 46
Q ss_pred CCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCCh
Q 009754 262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE 341 (526)
Q Consensus 262 ~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 341 (526)
++|+.|+++++ ++++.+ . ...+++|+.|+++++ .++.+....+
T Consensus 226 ~~L~~L~l~~n-~l~~~~--~--------------------------------l~~l~~L~~L~Ls~n-~l~~~~~~~~- 268 (390)
T 3o6n_A 226 VELTILKLQHN-NLTDTA--W--------------------------------LLNYPGLVEVDLSYN-ELEKIMYHPF- 268 (390)
T ss_dssp SSCCEEECCSS-CCCCCG--G--------------------------------GGGCTTCSEEECCSS-CCCEEESGGG-
T ss_pred ccccEEECCCC-CCcccH--H--------------------------------HcCCCCccEEECCCC-cCCCcChhHc-
Confidence 78999999985 444321 1 124589999999986 4555543333
Q ss_pred hhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccc
Q 009754 342 SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEE 421 (526)
Q Consensus 342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 421 (526)
..+++|+.|+++++ .++.++.....+++|++|+++++ .+..++.. ...+++|++|++++++ ++.+..
T Consensus 269 --~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~~------ 335 (390)
T 3o6n_A 269 --VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLKL------ 335 (390)
T ss_dssp --TTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCCC------
T ss_pred --cccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeCc------
Confidence 77899999999987 57778777788899999999997 57776652 4678999999999874 555432
Q ss_pred ccccccccccceeeccccc
Q 009754 422 AKDCNVFKELRYLELYCLP 440 (526)
Q Consensus 422 ~~~~~~~~~L~~L~l~~c~ 440 (526)
..+++|+.|++++++
T Consensus 336 ----~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 336 ----STHHTLKNLTLSHND 350 (390)
T ss_dssp ----CTTCCCSEEECCSSC
T ss_pred ----hhhccCCEEEcCCCC
Confidence 458999999998874
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.5e-20 Score=186.45 Aligned_cols=305 Identities=14% Similarity=0.139 Sum_probs=219.6
Q ss_pred ccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc-CcccCCCeeeEEecccccccceeeeccccchhh
Q 009754 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI 136 (526)
Q Consensus 58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 136 (526)
+++++.|++.+. .++.++... ...+++|+.|+++++. ++.++. .+..+++|++|++++ +.+
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~---------------n~l 105 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGF---------------NAI 105 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHH-HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCS---------------SCC
T ss_pred cCCceEEEecCC-chhhCChhH-hcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCC---------------CCC
Confidence 789999999874 466665442 3468999999999985 565554 667799999999983 233
Q ss_pred HHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754 137 QKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE 215 (526)
Q Consensus 137 ~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (526)
..++ ..+..+++|++|+++++. ++.++... ...+++|++|++++|. ++.+++ ..+..+++|++|++++| .++
T Consensus 106 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~ 178 (390)
T 3o6n_A 106 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSN-RLT 178 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCBCCT-TTTSSCTTCCEEECCSS-CCS
T ss_pred CcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH---hcCCCCCcEEECCCCc-cCccCh-hhccCCCCCCEEECCCC-cCC
Confidence 3443 446788999999999886 44433221 1357899999999984 555533 33788999999999998 455
Q ss_pred hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK 295 (526)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~ 295 (526)
.+ ....+++|+.|+++++ .+.. +...++|+.|+++++ ++...+..
T Consensus 179 ~~------------~~~~l~~L~~L~l~~n-~l~~-------~~~~~~L~~L~l~~n-~l~~~~~~-------------- 223 (390)
T 3o6n_A 179 HV------------DLSLIPSLFHANVSYN-LLST-------LAIPIAVEELDASHN-SINVVRGP-------------- 223 (390)
T ss_dssp BC------------CGGGCTTCSEEECCSS-CCSE-------EECCSSCSEEECCSS-CCCEEECC--------------
T ss_pred cc------------ccccccccceeecccc-cccc-------cCCCCcceEEECCCC-eeeecccc--------------
Confidence 44 3356899999999885 3343 334568899999885 45443211
Q ss_pred ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCE
Q 009754 296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 375 (526)
.+++|+.|+++++. ++..+ ....+++|+.|+++++..-...|..+..+++|++
T Consensus 224 ---------------------~~~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 224 ---------------------VNVELTILKLQHNN-LTDTA-----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp ---------------------CCSSCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ---------------------ccccccEEECCCCC-CcccH-----HHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 23789999999863 44432 2278899999999998544444677888999999
Q ss_pred EeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCC
Q 009754 376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFP 455 (526)
Q Consensus 376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 455 (526)
|+++++ .++.++. ....+++|++|++++| .++.++. ....+++|+.|++.++ .++.++.. .++
T Consensus 277 L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~N-~i~~~~~~----~~~ 339 (390)
T 3o6n_A 277 LYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHN-SIVTLKLS----THH 339 (390)
T ss_dssp EECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSS-CCCCCCCC----TTC
T ss_pred EECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCc--------cccccCcCCEEECCCC-ccceeCch----hhc
Confidence 999995 6777665 3367899999999998 4655543 1235799999999997 47777643 289
Q ss_pred CccEEEEcCCC
Q 009754 456 SLKQVVVRQCP 466 (526)
Q Consensus 456 ~L~~L~l~~C~ 466 (526)
+|++|++.+++
T Consensus 340 ~L~~L~l~~N~ 350 (390)
T 3o6n_A 340 TLKNLTLSHND 350 (390)
T ss_dssp CCSEEECCSSC
T ss_pred cCCEEEcCCCC
Confidence 99999998864
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=8.6e-20 Score=188.75 Aligned_cols=298 Identities=19% Similarity=0.219 Sum_probs=214.1
Q ss_pred CcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc
Q 009754 25 IPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (526)
Q Consensus 25 ~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 103 (526)
..+++++|+|+++ .+..++. .+.+ +++|++|++.++ .++...... ...+++|+.|+++++ .++.++.
T Consensus 30 ~~~~l~~L~L~~n-~l~~~~~~~~~~--------l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 30 IPTETRLLDLGKN-RIKTLNQDEFAS--------FPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp CCTTCSEEECCSS-CCCEECTTTTTT--------CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCT
T ss_pred CCCCCcEEECCCC-ccceECHhHccC--------CCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cCCccCc
Confidence 3578999999996 7888854 5555 899999999975 455554443 346899999999998 4677776
Q ss_pred C-cccCCCeeeEEecccccccceeeeccccchhhHHh-hhhhcCCCCCcEEEeecCCCCceecc-CCCCCcCCCCCccEE
Q 009754 104 G-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWH-GQALPVSFFNNLARL 180 (526)
Q Consensus 104 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L 180 (526)
. +..+++|++|++++ +.+..+ +..+..+++|+.|+++++. ++.+.. .. ..+++|++|
T Consensus 98 ~~~~~l~~L~~L~Ls~---------------n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~----~~l~~L~~L 157 (477)
T 2id5_A 98 GVFTGLSNLTKLDISE---------------NKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAF----SGLNSLEQL 157 (477)
T ss_dssp TSSTTCTTCCEEECTT---------------SCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSS----TTCTTCCEE
T ss_pred ccccCCCCCCEEECCC---------------CccccCChhHccccccCCEEECCCCc-cceeChhhc----cCCCCCCEE
Confidence 5 45689999999983 222222 3456678999999999876 443322 22 457899999
Q ss_pred EEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCcccc
Q 009754 181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE 260 (526)
Q Consensus 181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 260 (526)
++++| .++.+ +...+..+++|+.|++++| .+..++.. .+..+++|+.|+++++..+..++.. ...
T Consensus 158 ~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~i~~~~~~---------~~~~l~~L~~L~l~~~~~~~~~~~~---~~~ 222 (477)
T 2id5_A 158 TLEKC-NLTSI-PTEALSHLHGLIVLRLRHL-NINAIRDY---------SFKRLYRLKVLEISHWPYLDTMTPN---CLY 222 (477)
T ss_dssp EEESC-CCSSC-CHHHHTTCTTCCEEEEESC-CCCEECTT---------CSCSCTTCCEEEEECCTTCCEECTT---TTT
T ss_pred ECCCC-cCccc-ChhHhcccCCCcEEeCCCC-cCcEeChh---------hcccCcccceeeCCCCccccccCcc---ccc
Confidence 99998 45555 5555889999999999988 44444321 5567889999999998877776544 335
Q ss_pred CCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCC
Q 009754 261 LPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND 340 (526)
Q Consensus 261 ~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 340 (526)
..+|+.|++++| +++..+...+ ..+++|+.|+++++ .++.++...+
T Consensus 223 ~~~L~~L~l~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~Ls~n-~l~~~~~~~~ 268 (477)
T 2id5_A 223 GLNLTSLSITHC-NLTAVPYLAV--------------------------------RHLVYLRFLNLSYN-PISTIEGSML 268 (477)
T ss_dssp TCCCSEEEEESS-CCCSCCHHHH--------------------------------TTCTTCCEEECCSS-CCCEECTTSC
T ss_pred CccccEEECcCC-cccccCHHHh--------------------------------cCccccCeeECCCC-cCCccChhhc
Confidence 568999999985 5555442221 24588999999885 4666665544
Q ss_pred hhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754 341 ESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 341 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
..+++|+.|+++++..-...+..+..+++|++|+++++ .++.++.. .+..+++|++|++++++
T Consensus 269 ---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 269 ---HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp ---TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred ---cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence 67889999999887543334667788899999999985 67777664 34678889999988764
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=4e-19 Score=190.30 Aligned_cols=164 Identities=20% Similarity=0.105 Sum_probs=115.3
Q ss_pred CCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhh
Q 009754 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSE 394 (526)
Q Consensus 315 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (526)
...+++|+.+++.++......+...+ ..+++++.++++.+..-...+..+..+++|+.|+++++.....+.+. .+.
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~ 491 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFT 491 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCT
T ss_pred ccccccccchhhhhcccccccccccc---ccccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhh
Confidence 34567888888877543322222222 67788899999887544444566777899999999997656555443 347
Q ss_pred hccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC
Q 009754 395 SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG 474 (526)
Q Consensus 395 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~ 474 (526)
.+++|++|++++| +++.+.. + .+..+++|++|+++++ +++.++..... .+++|++|+++++.-....|..
T Consensus 492 ~l~~L~~L~Ls~N-~L~~l~~---~----~f~~l~~L~~L~Ls~N-~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 492 ELRNLTFLDLSQC-QLEQLSP---T----AFNSLSSLQVLNMSHN-NFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp TCTTCCEEECTTS-CCCEECT---T----TTTTCTTCCEEECTTS-CCCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSC
T ss_pred hccccCEEECCCC-ccCCcCh---H----HHcCCCCCCEEECCCC-cCCCCChhHHh-CCCCCCEEECCCCcCCCCCHHH
Confidence 8899999999997 5776654 1 2245789999999997 67877665432 4899999999986433444555
Q ss_pred CCCC-CCcceEEeeccCCC
Q 009754 475 VLDT-PMLNKVNVTEEEKD 492 (526)
Q Consensus 475 ~~~~-~~L~~l~l~~~~~~ 492 (526)
+..+ ++|+.|++++|.+.
T Consensus 562 l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTCCCTTCCEEECTTCCBC
T ss_pred HHhhhCcCCEEEeeCCCCc
Confidence 5555 68999999777665
No 36
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=4.1e-23 Score=219.68 Aligned_cols=416 Identities=13% Similarity=0.063 Sum_probs=181.2
Q ss_pred cCCcCCCceEEeccccccc---Eecccccccc----ccccccccccceeeeccccccccccccCceecCCC-ccEEEecC
Q 009754 23 VGIPSSLVNLNVSRCDKIE---EIIRHVGEEA----KENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS-LERVSMTH 94 (526)
Q Consensus 23 ~~~l~~L~~L~L~~c~~l~---~l~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~ 94 (526)
+..+++|++|++++|..+. .+|...+... ......+++|++|+++++ .+++.........+++ |++|++++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcC
Confidence 3456667777776665432 1222222110 112224666777777665 2332222211112344 77777766
Q ss_pred CCCccc--cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCC--c--eeccCCC
Q 009754 95 CPNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL--K--EIWHGQA 168 (526)
Q Consensus 95 c~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l--~--~~~~~~~ 168 (526)
|..+.. ++.....+++|++|+++++. ..+. ....+......+++|+.|+++++.-- . .+....
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~------~~~~----~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~- 216 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESS------FSEK----DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA- 216 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCE------EECC----CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECcccc------ccCc----chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-
Confidence 653321 11111245667777766431 0000 00111222234566777776654411 0 000000
Q ss_pred CCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccc
Q 009754 169 LPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKL 248 (526)
Q Consensus 169 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 248 (526)
..+++|++|++.+|. +..+ + ..+..+++|++|+++++........... ....+++|+.|.+.++. .
T Consensus 217 ---~~~~~L~~L~L~~~~-~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~l~~~~~L~~L~l~~~~-~ 282 (592)
T 3ogk_B 217 ---RNCRSLVSVKVGDFE-ILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEKYM-------NLVFPRKLCRLGLSYMG-P 282 (592)
T ss_dssp ---HHCTTCCEEECSSCB-GGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTSSS-------CCCCCTTCCEEEETTCC-T
T ss_pred ---hhCCCCcEEeccCcc-HHHH-H-HHHhhhhHHHhhcccccccccchHHHHH-------HhhccccccccCccccc-h
Confidence 235667777776653 3332 2 3366667777777764322211110000 33445566666665531 1
Q ss_pred cccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCc
Q 009754 249 KRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL 321 (526)
Q Consensus 249 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 321 (526)
..++.. +..+++|++|++++|. +.+.. ...|+.|.+.++ ... ..+..+ ...+++|
T Consensus 283 ~~l~~~---~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~-~~l~~~------------~~~~~~L 344 (592)
T 3ogk_B 283 NEMPIL---FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGD-RGLEVL------------AQYCKQL 344 (592)
T ss_dssp TTGGGG---GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHH------------HHHCTTC
T ss_pred hHHHHH---HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCH-HHHHHH------------HHhCCCC
Confidence 222222 3456666666666654 33211 234555555411 000 000000 0124566
Q ss_pred cEEEecC----------CCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCC-CCCCCCEEeecc---ccCccc
Q 009754 322 RWLELSG----------LHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSW-HLENLEALEVSK---CHGLIN 386 (526)
Q Consensus 322 ~~L~l~~----------~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~-~l~~L~~L~l~~---c~~l~~ 386 (526)
++|++.+ |..++......+ ...+++|++|++ .|+.++.. +..+. .+++|++|+++. |+.+++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l--~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIAL--AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHH--HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CEEEeecCccccccccccCccCHHHHHHH--HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 6666663 444432211100 134566666666 33333321 11222 255666666652 445554
Q ss_pred cccc----hhhhhccCCceEEEecccC-cceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEE
Q 009754 387 LLTF----STSESLVNLGRMMIADCKM-IEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVV 461 (526)
Q Consensus 387 l~~~----~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 461 (526)
.|.. ..+..+++|++|+++.|.+ +++... .. ....+++|++|++.+|. +++.........+++|++|+
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-----~~-~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL-----SY-IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-----HH-HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEE
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-----HH-HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeee
Confidence 3221 1234566666666665543 211110 00 00225666666666653 33211111111256666666
Q ss_pred EcCCCCcee--ccCCCCCCCCcceEEeeccCCCC
Q 009754 462 VRQCPKMKI--FSQGVLDTPMLNKVNVTEEEKDD 493 (526)
Q Consensus 462 l~~C~~l~~--lp~~~~~~~~L~~l~l~~~~~~~ 493 (526)
+++|+ ++. ++.....+++|+.|+++++++..
T Consensus 495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 66665 321 22222245666666665555543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4.2e-20 Score=196.30 Aligned_cols=306 Identities=13% Similarity=0.124 Sum_probs=215.1
Q ss_pred CcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccC
Q 009754 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG 104 (526)
Q Consensus 25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 104 (526)
.+++++.|+++++ .+..+|..+.. .+++|++|++.++. ++..+... ...+++|+.|++++|. ++.++..
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~-------~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLD-------SFRQVELLNLNDLQ-IEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHH-------HCCCCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHc-------cCCCCcEEECCCCC-CCCCChHH-hcCCCCCCEEECCCCc-CCCCCHH
Confidence 4789999999996 78888875422 38899999999754 66555433 3468999999999985 5655554
Q ss_pred -cccCCCeeeEEecccccccceeeeccccchhhHHhhhh-hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754 105 -ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (526)
Q Consensus 105 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l 182 (526)
+..+++|++|++++ +.+..++.. +..+++|++|+++++. ++.+.... ...+++|++|++
T Consensus 118 ~~~~l~~L~~L~L~~---------------n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L 178 (597)
T 3oja_B 118 VFQNVPLLTVLVLER---------------NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT---FQATTSLQNLQL 178 (597)
T ss_dssp TTTTCTTCCEEECCS---------------SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT---TTTCTTCCEEEC
T ss_pred HHcCCCCCCEEEeeC---------------CCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhh---hhcCCcCcEEEC
Confidence 46789999999983 344455544 4678999999999886 43322111 145789999999
Q ss_pred ecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC
Q 009754 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP 262 (526)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 262 (526)
++|. ++.+ + +..+++|++|++++| .+..++ ..++|+.|+++++ .+..++.. ..+
T Consensus 179 ~~N~-l~~~-~---~~~l~~L~~L~l~~n-~l~~l~--------------~~~~L~~L~ls~n-~l~~~~~~-----~~~ 232 (597)
T 3oja_B 179 SSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHN-SINVVRGP-----VNV 232 (597)
T ss_dssp TTSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCTTCSEEECCSS-CCCEEECS-----CCS
T ss_pred cCCC-CCCc-C---hhhhhhhhhhhcccC-cccccc--------------CCchhheeeccCC-cccccccc-----cCC
Confidence 9984 5544 3 677899999999987 444332 3568999999886 45555332 346
Q ss_pred CcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChh
Q 009754 263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES 342 (526)
Q Consensus 263 ~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 342 (526)
+|+.|++++| .+++.+ . .+.+++|+.|+++++. ++.+....+
T Consensus 233 ~L~~L~L~~n-~l~~~~--~--------------------------------l~~l~~L~~L~Ls~N~-l~~~~~~~~-- 274 (597)
T 3oja_B 233 ELTILKLQHN-NLTDTA--W--------------------------------LLNYPGLVEVDLSYNE-LEKIMYHPF-- 274 (597)
T ss_dssp CCCEEECCSS-CCCCCG--G--------------------------------GGGCTTCSEEECCSSC-CCEEESGGG--
T ss_pred CCCEEECCCC-CCCCCh--h--------------------------------hccCCCCCEEECCCCc-cCCCCHHHh--
Confidence 8889998885 444321 1 1245788888888854 544433332
Q ss_pred hhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccc
Q 009754 343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEA 422 (526)
Q Consensus 343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 422 (526)
..+++|+.|++++| .++.+|..+..+++|+.|++++| .+..+|. .+..+++|+.|++++|. +..++.
T Consensus 275 -~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~~------- 341 (597)
T 3oja_B 275 -VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLKL------- 341 (597)
T ss_dssp -TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCCC-------
T ss_pred -cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcCh-------
Confidence 67788888888886 46677777777888888888886 5666664 24678888888888874 444432
Q ss_pred cccccccccceeeccccc
Q 009754 423 KDCNVFKELRYLELYCLP 440 (526)
Q Consensus 423 ~~~~~~~~L~~L~l~~c~ 440 (526)
..+++|+.|++++++
T Consensus 342 ---~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 342 ---STHHTLKNLTLSHND 356 (597)
T ss_dssp ---CTTCCCSEEECCSSC
T ss_pred ---hhcCCCCEEEeeCCC
Confidence 357888888888765
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.5e-19 Score=186.95 Aligned_cols=280 Identities=19% Similarity=0.204 Sum_probs=142.9
Q ss_pred hhcCCCCCcEEEeecCCCCcee-ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccc
Q 009754 142 EMIGFRDMEYLQLSYFPHLKEI-WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL 220 (526)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 220 (526)
.+..+++|++|+++++. ++.+ +... ..+++|++|++++| .++.+ +...+..+++|++|++++|. +..++..
T Consensus 51 ~~~~l~~L~~L~L~~n~-i~~~~~~~~----~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~~~~ 122 (477)
T 2id5_A 51 EFASFPHLEELELNENI-VSAVEPGAF----NNLFNLRTLGLRSN-RLKLI-PLGVFTGLSNLTKLDISENK-IVILLDY 122 (477)
T ss_dssp TTTTCTTCCEEECTTSC-CCEECTTTT----TTCTTCCEEECCSS-CCCSC-CTTSSTTCTTCCEEECTTSC-CCEECTT
T ss_pred HccCCCCCCEEECCCCc-cCEeChhhh----hCCccCCEEECCCC-cCCcc-CcccccCCCCCCEEECCCCc-cccCChh
Confidence 34445556666665553 3322 1112 34566666666665 34443 32335566666666666663 3222110
Q ss_pred cccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchh
Q 009754 221 EEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEE 300 (526)
Q Consensus 221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~ 300 (526)
.+..+++|+.|+++++ .+..+. ...+..+++|++|++++| +++..++..+
T Consensus 123 ---------~~~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~l----------------- 172 (477)
T 2id5_A 123 ---------MFQDLYNLKSLEVGDN-DLVYIS--HRAFSGLNSLEQLTLEKC-NLTSIPTEAL----------------- 172 (477)
T ss_dssp ---------TTTTCTTCCEEEECCT-TCCEEC--TTSSTTCTTCCEEEEESC-CCSSCCHHHH-----------------
T ss_pred ---------HccccccCCEEECCCC-ccceeC--hhhccCCCCCCEEECCCC-cCcccChhHh-----------------
Confidence 3445666666666664 233331 111456666666666664 3443322111
Q ss_pred hhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecc
Q 009754 301 NFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (526)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (526)
..+++|+.|++.++ .+..++...+ ..+++|+.|++++|+.+..++.......+|++|++++
T Consensus 173 ---------------~~l~~L~~L~l~~n-~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 173 ---------------SHLHGLIVLRLRHL-NINAIRDYSF---KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp ---------------TTCTTCCEEEEESC-CCCEECTTCS---CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred ---------------cccCCCcEEeCCCC-cCcEeChhhc---ccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 13356666666654 3444443333 4556666666666666666655555555666666666
Q ss_pred ccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEE
Q 009754 381 CHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQV 460 (526)
Q Consensus 381 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 460 (526)
+ .++.++.. .+..+++|++|+++++. ++.+.. + ....+++|+.|++.++ .++.+...... .+++|++|
T Consensus 234 n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~---~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L 301 (477)
T 2id5_A 234 C-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG---S----MLHELLRLQEIQLVGG-QLAVVEPYAFR-GLNYLRVL 301 (477)
T ss_dssp S-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECT---T----SCTTCTTCCEEECCSS-CCSEECTTTBT-TCTTCCEE
T ss_pred C-cccccCHH-HhcCccccCeeECCCCc-CCccCh---h----hccccccCCEEECCCC-ccceECHHHhc-CcccCCEE
Confidence 4 45555432 23556666666666653 444332 0 1123566666666665 44444332221 36666666
Q ss_pred EEcCCCCceeccCC-CCCCCCcceEEeeccCC
Q 009754 461 VVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEK 491 (526)
Q Consensus 461 ~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~ 491 (526)
+++++ +++.+|.. +..+++|+.|++.++.+
T Consensus 302 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 302 NVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp ECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 66664 44444432 33456666666655444
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.8e-19 Score=189.87 Aligned_cols=305 Identities=14% Similarity=0.140 Sum_probs=187.1
Q ss_pred ccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc-CcccCCCeeeEEecccccccceeeeccccchhh
Q 009754 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI 136 (526)
Q Consensus 58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 136 (526)
+.+++.|.+.++ .++.++... ...+++|+.|++++|. ++.++. .+..+++|++|++++ +.+
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~---------------n~l 111 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGF---------------NAI 111 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHH-HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCS---------------SCC
T ss_pred CCCceEEEeeCC-CCCCcCHHH-HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCC---------------CcC
Confidence 567777777753 344444332 2357788888888774 454443 566677888888873 223
Q ss_pred HHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754 137 QKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE 215 (526)
Q Consensus 137 ~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (526)
..++ ..+..+++|++|+++++. ++.++... ...+++|++|++++|. ++.+++. .+..+++|++|++++| .+.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~ 184 (597)
T 3oja_B 112 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNN-LERIEDD-TFQATTSLQNLQLSSN-RLT 184 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECTTS-CCS
T ss_pred CCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH---hccCCCCCEEEeeCCc-CCCCChh-hhhcCCcCcEEECcCC-CCC
Confidence 3333 334667888888888775 44332211 1346788888888773 4444332 3677888888888877 444
Q ss_pred hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK 295 (526)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~ 295 (526)
.+ ..+.+++|+.|+++++ .+.. +...++|+.|+++++ .+...+..
T Consensus 185 ~~------------~~~~l~~L~~L~l~~n-~l~~-------l~~~~~L~~L~ls~n-~l~~~~~~-------------- 229 (597)
T 3oja_B 185 HV------------DLSLIPSLFHANVSYN-LLST-------LAIPIAVEELDASHN-SINVVRGP-------------- 229 (597)
T ss_dssp BC------------CGGGCTTCSEEECCSS-CCSE-------EECCTTCSEEECCSS-CCCEEECS--------------
T ss_pred Cc------------ChhhhhhhhhhhcccC-cccc-------ccCCchhheeeccCC-cccccccc--------------
Confidence 43 2345777888887775 2332 234556777777774 34433211
Q ss_pred ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCE
Q 009754 296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 375 (526)
.+++|+.|+++++. ++.. +....+++|+.|++++|..-...|..+..+++|+.
T Consensus 230 ---------------------~~~~L~~L~L~~n~-l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 230 ---------------------VNVELTILKLQHNN-LTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ---------------------CCSCCCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ---------------------cCCCCCEEECCCCC-CCCC-----hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 12577777777753 3332 11267778888888876543344566777788888
Q ss_pred EeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCC
Q 009754 376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFP 455 (526)
Q Consensus 376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 455 (526)
|+++++ .+..++. ....+++|+.|++++| .++.++. ....+++|+.|+++++ .+..++.. .++
T Consensus 283 L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~--------~~~~l~~L~~L~L~~N-~l~~~~~~----~~~ 345 (597)
T 3oja_B 283 LYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHN-SIVTLKLS----THH 345 (597)
T ss_dssp EECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSS-CCCCCCCC----TTC
T ss_pred EECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCc--------ccccCCCCCEEECCCC-CCCCcChh----hcC
Confidence 888874 5666554 2356778888888776 3444432 1134678888888876 45555532 277
Q ss_pred CccEEEEcCCC
Q 009754 456 SLKQVVVRQCP 466 (526)
Q Consensus 456 ~L~~L~l~~C~ 466 (526)
+|++|++.+++
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 88888887754
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=2.2e-19 Score=189.51 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=70.8
Q ss_pred cccceeEEeeccCceeecc-cccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccccccccccccC
Q 009754 2 IFLLFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLEN 79 (526)
Q Consensus 2 ~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 79 (526)
++++++.|+++........ ..++.+++|++|+++++ .+..+ |..+.+ +++|++|+++++. ++.++..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--------l~~L~~L~Ls~N~-l~~lp~~- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLF--------NQDLEYLDVSHNR-LQNISCC- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTT--------CTTCCEEECTTSC-CCEECSC-
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCC--------CCCCCEEECCCCc-CCccCcc-
Confidence 3567788888876655444 26788888888888885 67777 444554 7788888888743 5555443
Q ss_pred ceecCCCccEEEecCCCCcccc--ccCcccCCCeeeEEecc
Q 009754 80 YTLEFPSLERVSMTHCPNMKTF--SHGILSTPKLHKVQVTE 118 (526)
Q Consensus 80 ~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~ 118 (526)
.+++|++|++++|. ++.+ |..+..+++|++|++++
T Consensus 119 ---~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 119 ---PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp ---CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred ---ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCC
Confidence 57888888888874 4443 35667788888888874
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.3e-18 Score=186.33 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=104.6
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESL 396 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 396 (526)
..+|+.+++..+. ...++... ..+++|+.+++.+++.....+ ..+..+++++.++++.+ .+...+.. ....+
T Consensus 396 ~~~L~~L~~~~~~-~~~~~~~~----~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~-~~~~~ 468 (635)
T 4g8a_A 396 TISLKYLDLSFNG-VITMSSNF----LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGL 468 (635)
T ss_dssp CSCCCEEECCSCS-EEEECSCC----TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTT-TTTTC
T ss_pred hhhhhhhhccccc-cccccccc----cccccccchhhhhcccccccccccccccccccccccccc-cccccccc-ccccc
Confidence 3556666665532 23333332 556777777777665444332 34566777888888774 44444432 34667
Q ss_pred cCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CC
Q 009754 397 VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GV 475 (526)
Q Consensus 397 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~ 475 (526)
++|+.|+++++...+.+.. .....+++|++|++++| .++.++..... .+++|++|+++++ +++.++. .+
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~-------~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~-~l~~L~~L~Ls~N-~l~~l~~~~~ 538 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFPY 538 (635)
T ss_dssp TTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCCBCCCGGG
T ss_pred hhhhhhhhhhcccccccCc-------hhhhhccccCEEECCCC-ccCCcChHHHc-CCCCCCEEECCCC-cCCCCChhHH
Confidence 8899999988764443322 12245789999999998 67877654432 4899999999986 6766654 45
Q ss_pred CCCCCcceEEeeccCCCCC
Q 009754 476 LDTPMLNKVNVTEEEKDDD 494 (526)
Q Consensus 476 ~~~~~L~~l~l~~~~~~~~ 494 (526)
..+++|+.|+++.+++...
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp TTCTTCCEEECTTSCCCBC
T ss_pred hCCCCCCEEECCCCcCCCC
Confidence 5789999999988877543
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.3e-21 Score=207.96 Aligned_cols=419 Identities=13% Similarity=0.067 Sum_probs=214.9
Q ss_pred ccceeEEeeccCceeecc----cccC------------CcCCCceEEecccccccEe-ccccccccccccccccc-ccee
Q 009754 3 FLLFYFFNIHTHAHTFAY----FQVG------------IPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSK-LKVL 64 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~----~~~~------------~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~-L~~L 64 (526)
|++|+.|+++++...... ...+ .+++|++|+|++| .+... +..+.. .+++ |++|
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~-------~~~~~L~~L 143 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAK-------ARADDLETL 143 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHH-------HHGGGCCEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHH-------hccccCcEE
Confidence 788999999887653311 1111 6899999999997 34322 222222 2445 9999
Q ss_pred eeccccccccccccCceecCCCccEEEecCCCCccc-----cccCcccCCCeeeEEecccccccceeeeccccchhhHHh
Q 009754 65 ILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT-----FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC 139 (526)
Q Consensus 65 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 139 (526)
++.+|..++..........+++|++|++++|. +.. ++.....+++|++|++++..- . ......+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~------~----~~~~~~l 212 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEF------A----KISPKDL 212 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCC------S----SCCHHHH
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCC------C----ccCHHHH
Confidence 99888755443332223468999999999884 221 111223577888888873100 0 0011334
Q ss_pred hhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccC-CChHHHhcCCCCCeeeeccccccchhc
Q 009754 140 YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSA-IPANLLRCLNNLQWLEVRNCDSIEEVL 218 (526)
Q Consensus 140 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~l~~l~~L~~L~l~~~~~l~~~~ 218 (526)
+..+..+++|+.|+++++. +..+.... ..+++|++|.+..+...... .....+..+++|+.|+++++ ....++
T Consensus 213 ~~~~~~~~~L~~L~L~~~~-~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~ 286 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFE-ILELVGFF----KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMP 286 (592)
T ss_dssp HHHHHHCTTCCEEECSSCB-GGGGHHHH----HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGG
T ss_pred HHHHhhCCCCcEEeccCcc-HHHHHHHH----hhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHH
Confidence 4444456777777777654 22221111 33456666666542211000 00011344555555555543 222222
Q ss_pred cccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecC-
Q 009754 219 HLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDN- 290 (526)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~- 290 (526)
. ....+++|++|++++|. +....... .+..+++|++|++.++ +.+.. ...|++|++++
T Consensus 287 ~----------~~~~~~~L~~L~Ls~~~-l~~~~~~~-~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 287 I----------LFPFAAQIRKLDLLYAL-LETEDHCT-LIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp G----------GGGGGGGCCEEEETTCC-CCHHHHHH-HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECC
T ss_pred H----------HHhhcCCCcEEecCCCc-CCHHHHHH-HHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecC
Confidence 2 22344556666665554 22111000 0235555666655532 11111 23455555552
Q ss_pred ---------CCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEecc---Cc
Q 009754 291 ---------KEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE---CS 358 (526)
Q Consensus 291 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~---c~ 358 (526)
+...+-.....+. ..+++|++|++. +..++......+ ...+++|+.|++.+ |+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~------------~~~~~L~~L~l~-~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALA------------QGCQELEYMAVY-VSDITNESLESI--GTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHH------------HHCTTCSEEEEE-ESCCCHHHHHHH--HHHCCSCCEEEEEECSCCS
T ss_pred ccccccccccCccCHHHHHHHH------------hhCccCeEEEee-cCCccHHHHHHH--HhhCCCCcEEEEeecCCCc
Confidence 2111111111110 135788888883 344433221111 13478888888874 45
Q ss_pred CccccCC------CCCCCCCCCEEeeccccC-ccccccchhhhhccCCceEEEecccCcceeeccCCccccccccccccc
Q 009754 359 KLQKLVP------PSWHLENLEALEVSKCHG-LINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKEL 431 (526)
Q Consensus 359 ~l~~l~~------~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L 431 (526)
.+++.|. .+..+++|++|+++.|.+ +.+.....+...+++|++|++++|. +++... ......+++|
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~------~~~~~~~~~L 490 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL------MEFSRGCPNL 490 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH------HHHHTCCTTC
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH------HHHHhcCccc
Confidence 5665432 245578888888887654 3443333344557888888888774 332111 0001246888
Q ss_pred ceeeccccccccee--cCCCccCCCCCccEEEEcCCCCceeccC--CCCCCCCcceEEe
Q 009754 432 RYLELYCLPSLTSF--CLGNYALEFPSLKQVVVRQCPKMKIFSQ--GVLDTPMLNKVNV 486 (526)
Q Consensus 432 ~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~l~~C~~l~~lp~--~~~~~~~L~~l~l 486 (526)
++|++++|+ +++. +.... .+++|++|++++|. ++.... ....+|.++...+
T Consensus 491 ~~L~l~~n~-l~~~~~~~~~~--~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 491 QKLEMRGCC-FSERAIAAAVT--KLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp CEEEEESCC-CBHHHHHHHHH--HCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEE
T ss_pred CeeeccCCC-CcHHHHHHHHH--hcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEe
Confidence 888888886 5432 22222 37888888888886 442211 1113455555555
No 43
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2.1e-21 Score=206.55 Aligned_cols=206 Identities=13% Similarity=0.066 Sum_probs=110.6
Q ss_pred CCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc-------CcccceeeecCCC--------Ccccc
Q 009754 233 LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI-------SNSVVHVTTDNKE--------PQKLT 297 (526)
Q Consensus 233 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~--------~~~~~ 297 (526)
.+++|++|++++|. +.+.... ..+..+++|++|++.+| +.+.. ...|++|++.+++ ..+-.
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLV-KLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHH-HHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred hhCCCCEEEccCCC-CCHHHHH-HHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 45677777777765 4432111 01346677777777776 22211 3456667664321 11101
Q ss_pred chhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEec-----cCcCccccCC------C
Q 009754 298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEIS-----ECSKLQKLVP------P 366 (526)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~-----~c~~l~~l~~------~ 366 (526)
.+..+. ..+++|+.|.+. +..++......+ ...+++|+.|++. +|+.++..|. .
T Consensus 363 ~l~~l~------------~~~~~L~~L~~~-~~~l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 363 GLVSVS------------MGCPKLESVLYF-CRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp HHHHHH------------HHCTTCCEEEEE-ESCCCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred HHHHHH------------HhchhHHHHHHh-cCCcCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 111111 124788888554 344433221111 1357788888888 5666664432 1
Q ss_pred CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceec
Q 009754 367 SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFC 446 (526)
Q Consensus 367 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 446 (526)
+..+++|++|++++ .+++.....+...+++|+.|++++|. +++... .. ....+++|+.|++++|+. ++..
T Consensus 428 ~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~-----~~-l~~~~~~L~~L~L~~n~~-~~~~ 497 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM-----HH-VLSGCDSLRKLEIRDCPF-GDKA 497 (594)
T ss_dssp HHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH-----HH-HHHHCTTCCEEEEESCSC-CHHH
T ss_pred HhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHH-----HH-HHhcCCCcCEEECcCCCC-cHHH
Confidence 45667888888865 45554333343457888888888774 322111 00 002368888888888864 3322
Q ss_pred CCCccCCCCCccEEEEcCCCC
Q 009754 447 LGNYALEFPSLKQVVVRQCPK 467 (526)
Q Consensus 447 ~~~~~~~~~~L~~L~l~~C~~ 467 (526)
.......+++|++|++++|+.
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhCCCCCEEeeeCCCC
Confidence 211111378888888888865
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.3e-18 Score=170.34 Aligned_cols=206 Identities=18% Similarity=0.267 Sum_probs=114.3
Q ss_pred cCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCc
Q 009754 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI 105 (526)
Q Consensus 26 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 105 (526)
.++++.|+++++ .+..+|..+.+ +++|++|+++++. ++.++.. ...+++|++|++++| .++.+|..+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~--------l~~L~~L~L~~n~-l~~lp~~--~~~l~~L~~L~Ls~n-~l~~lp~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFR--------LSHLQHMTIDAAG-LMELPDT--MQQFAGLETLTLARN-PLRALPASI 146 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGG--------GTTCSEEEEESSC-CCCCCSC--GGGGTTCSEEEEESC-CCCCCCGGG
T ss_pred ccceeEEEccCC-CchhcChhhhh--------CCCCCEEECCCCC-ccchhHH--HhccCCCCEEECCCC-ccccCcHHH
Confidence 455666666664 45566655554 5566666666532 3333221 234666666666665 344555555
Q ss_pred ccCCCeeeEEecccccccceeeeccccchhhHHhhhh---------hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCC
Q 009754 106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE---------MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNN 176 (526)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 176 (526)
..+++|++|+++++.. ...++.. +..+++|+.|+++++. ++.++... ..+++
T Consensus 147 ~~l~~L~~L~L~~n~~--------------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l----~~l~~ 207 (328)
T 4fcg_A 147 ASLNRLRELSIRACPE--------------LTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASI----ANLQN 207 (328)
T ss_dssp GGCTTCCEEEEEEETT--------------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGG----GGCTT
T ss_pred hcCcCCCEEECCCCCC--------------ccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhh----cCCCC
Confidence 5666666666663221 1112211 2236667777776654 33332222 44667
Q ss_pred ccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCC
Q 009754 177 LARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG 256 (526)
Q Consensus 177 L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 256 (526)
|++|++++|. ++.+++. +..+++|++|++++|.....++. .++.+++|+.|++++|.....++..
T Consensus 208 L~~L~L~~N~-l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~----------~~~~l~~L~~L~L~~n~~~~~~p~~-- 272 (328)
T 4fcg_A 208 LKSLKIRNSP-LSALGPA--IHHLPKLEELDLRGCTALRNYPP----------IFGGRAPLKRLILKDCSNLLTLPLD-- 272 (328)
T ss_dssp CCEEEEESSC-CCCCCGG--GGGCTTCCEEECTTCTTCCBCCC----------CTTCCCCCCEEECTTCTTCCBCCTT--
T ss_pred CCEEEccCCC-CCcCchh--hccCCCCCEEECcCCcchhhhHH----------HhcCCCCCCEEECCCCCchhhcchh--
Confidence 7777777663 4444332 66677777777777665555544 4455667777777776665555443
Q ss_pred ccccCCCcceEeeecCCCCcccc
Q 009754 257 NIIELPELQHLTIQNCPDMETFI 279 (526)
Q Consensus 257 ~~~~~~~L~~L~l~~c~~l~~~~ 279 (526)
+..+++|++|++++|+....+|
T Consensus 273 -~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 273 -IHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp -GGGCTTCCEEECTTCTTCCCCC
T ss_pred -hhcCCCCCEEeCCCCCchhhcc
Confidence 5566777777777765554444
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.6e-18 Score=169.80 Aligned_cols=187 Identities=22% Similarity=0.306 Sum_probs=127.0
Q ss_pred CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (526)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 251 (526)
..+++|++|++++|. ++.+ |.. +..+++|++|++++|..+..+|...+....+. .+..+++|+.|+++++ .++.+
T Consensus 124 ~~l~~L~~L~Ls~n~-l~~l-p~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~-~~~~l~~L~~L~L~~n-~l~~l 198 (328)
T 4fcg_A 124 QQFAGLETLTLARNP-LRAL-PAS-IASLNRLRELSIRACPELTELPEPLASTDASG-EHQGLVNLQSLRLEWT-GIRSL 198 (328)
T ss_dssp GGGTTCSEEEEESCC-CCCC-CGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC-CEEESTTCCEEEEEEE-CCCCC
T ss_pred hccCCCCEEECCCCc-cccC-cHH-HhcCcCCCEEECCCCCCccccChhHhhccchh-hhccCCCCCEEECcCC-CcCcc
Confidence 446667777776663 4444 322 66777777777777766666653211000000 1234778888888876 45555
Q ss_pred ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (526)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 331 (526)
+.. +..+++|++|++++| +++.+++ .+ +.+++|+.|+++++..
T Consensus 199 p~~---l~~l~~L~~L~L~~N-~l~~l~~-~l--------------------------------~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 199 PAS---IANLQNLKSLKIRNS-PLSALGP-AI--------------------------------HHLPKLEELDLRGCTA 241 (328)
T ss_dssp CGG---GGGCTTCCEEEEESS-CCCCCCG-GG--------------------------------GGCTTCCEEECTTCTT
T ss_pred hHh---hcCCCCCCEEEccCC-CCCcCch-hh--------------------------------ccCCCCCEEECcCCcc
Confidence 443 667888888888885 4544332 11 2447888888888776
Q ss_pred ceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEec
Q 009754 332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD 406 (526)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 406 (526)
...++... ..+++|+.|++++|+..+.+|..+..+++|++|++++|+.++.+|. .+..+++|+.+++..
T Consensus 242 ~~~~p~~~----~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 242 LRNYPPIF----GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp CCBCCCCT----TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred hhhhHHHh----cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 66665544 7788899999998888888888888889999999999888888876 457888888888865
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.2e-17 Score=164.08 Aligned_cols=226 Identities=15% Similarity=0.185 Sum_probs=113.0
Q ss_pred CCccEEEecCCCCccccc-cCcccCCCeeeEEecccccccceeeeccccchhhHHh-hhhhcCCCCCcEEEeecCCCCce
Q 009754 85 PSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 85 ~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
++|+.|+++++. ++.++ ..+..+++|++|++++ +.+..+ +..+..+++|++|+++++. ++.
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~---------------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 116 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVN---------------NKISKIHEKAFSPLRKLQKLYISKNH-LVE 116 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS---------------SCCCEECGGGSTTCTTCCEEECCSSC-CCS
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCC---------------CccCccCHhHhhCcCCCCEEECCCCc-CCc
Confidence 455566666553 33332 2344555566666652 122222 3345566677777776654 332
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
++. ..+++|++|+++++. ++.+ +...+..+++|++|++++|. ++..+...+ ....+ +|+.|++
T Consensus 117 l~~------~~~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------~~~~l-~L~~L~l 179 (332)
T 2ft3_A 117 IPP------NLPSSLVELRIHDNR-IRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPG-------AFDGL-KLNYLRI 179 (332)
T ss_dssp CCS------SCCTTCCEEECCSSC-CCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTT-------SSCSC-CCSCCBC
T ss_pred cCc------cccccCCEEECCCCc-cCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcc-------cccCC-ccCEEEC
Confidence 222 223677777777763 4444 33336677777777777763 332111000 22333 6677777
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCcc
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR 322 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 322 (526)
+++ .++.++.. .+++|++|+++++ +++..++..+ ..+++|+
T Consensus 180 ~~n-~l~~l~~~-----~~~~L~~L~l~~n-~i~~~~~~~l--------------------------------~~l~~L~ 220 (332)
T 2ft3_A 180 SEA-KLTGIPKD-----LPETLNELHLDHN-KIQAIELEDL--------------------------------LRYSKLY 220 (332)
T ss_dssp CSS-BCSSCCSS-----SCSSCSCCBCCSS-CCCCCCTTSS--------------------------------TTCTTCS
T ss_pred cCC-CCCccCcc-----ccCCCCEEECCCC-cCCccCHHHh--------------------------------cCCCCCC
Confidence 665 34444322 2256666666663 3433332221 2335666
Q ss_pred EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccccc
Q 009754 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT 389 (526)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 389 (526)
.|+++++ .++.++...+ ..+++|+.|++++| .++.+|.++..+++|++|+++++ .++.++.
T Consensus 221 ~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 221 RLGLGHN-QIRMIENGSL---SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp CCBCCSS-CCCCCCTTGG---GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred EEECCCC-cCCcCChhHh---hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccCh
Confidence 6666553 3333333222 45556666666554 34455555555566666666653 3444443
No 47
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=2.8e-20 Score=197.87 Aligned_cols=383 Identities=15% Similarity=0.110 Sum_probs=189.2
Q ss_pred ccceeEEeeccCceeec-ccccC-CcCCCceEEecccccccE--eccccccccccccccccccceeeecccccccccccc
Q 009754 3 FLLFYFFNIHTHAHTFA-YFQVG-IPSSLVNLNVSRCDKIEE--IIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE 78 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~-~~~~~-~l~~L~~L~L~~c~~l~~--l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 78 (526)
+++|+.|+++.+..... +..+. .+++|++|++++|..+.. ++.... .+++|++|++.++. +++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--------~~~~L~~L~L~~~~-i~~~~~~ 174 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA--------TCRNLKELDLRESD-VDDVSGH 174 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH--------HCTTCCEEECTTCE-EECCCGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH--------hCCCCCEEeCcCCc-cCCcchH
Confidence 56788888887653322 12333 478888888888754443 222222 37788888887765 3332211
Q ss_pred ---CceecCCCccEEEecCCC-Ccc--ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEE
Q 009754 79 ---NYTLEFPSLERVSMTHCP-NMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYL 152 (526)
Q Consensus 79 ---~~~~~~~~L~~L~l~~c~-~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L 152 (526)
.....+++|+.|++++|. .+. .+..-...+++|++|++.++ ..+..++..+..+++|+.|
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--------------~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--------------VPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT--------------SCHHHHHHHHHHCTTCSEE
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC--------------CcHHHHHHHHhcCCcceEc
Confidence 112246778888877774 111 11111123577777777743 1222233334444555555
Q ss_pred EeecCCC-------------------Ccee------ccCCCCCc--CCCCCccEEEEecCCCcccCCChHHHhcCCCCCe
Q 009754 153 QLSYFPH-------------------LKEI------WHGQALPV--SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQW 205 (526)
Q Consensus 153 ~l~~~~~-------------------l~~~------~~~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~ 205 (526)
+++.+.. ++.+ .... ++. ..+++|++|++++|. ++......++..+++|++
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY-LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG-GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCE
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh-HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCE
Confidence 5443321 0000 0000 000 134566666666664 332112222445666666
Q ss_pred eeeccccccchhccccccccccCCCCCCCCccceEecCCC--------ccccccccCCCccccCCCcceEeeecCCCCcc
Q 009754 206 LEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL--------PKLKRFCNFTGNIIELPELQHLTIQNCPDMET 277 (526)
Q Consensus 206 L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 277 (526)
|++++|..-..+.. ....+++|+.|+++++ ..+++.... .....+++|+.|.+. |.++++
T Consensus 319 L~l~~~~~~~~l~~----------l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~-~l~~~~~~L~~L~~~-~~~l~~ 386 (594)
T 2p1m_B 319 LWVLDYIEDAGLEV----------LASTCKDLRELRVFPSEPFVMEPNVALTEQGLV-SVSMGCPKLESVLYF-CRQMTN 386 (594)
T ss_dssp EEEEGGGHHHHHHH----------HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH-HHHHHCTTCCEEEEE-ESCCCH
T ss_pred EeCcCccCHHHHHH----------HHHhCCCCCEEEEecCcccccccCCCCCHHHHH-HHHHhchhHHHHHHh-cCCcCH
Confidence 66665521111111 1123556666666332 222211000 001235566666332 344433
Q ss_pred ccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEec-----CCCCceEeccc-CCh-hhhhhcccc
Q 009754 278 FISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELS-----GLHKVQHLWKE-NDE-SNKAFANLE 350 (526)
Q Consensus 278 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~l~~~-~~~-~~~~l~~L~ 350 (526)
..... +. ..+++|+.|++. +|..++..+.. .+. ....+++|+
T Consensus 387 ~~~~~-------------------l~------------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 387 AALIT-------------------IA------------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp HHHHH-------------------HH------------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred HHHHH-------------------HH------------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 22110 00 124788888888 55666543321 111 125678899
Q ss_pred eeEeccCcCcccc-CCCCC-CCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccc
Q 009754 351 SLEISECSKLQKL-VPPSW-HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF 428 (526)
Q Consensus 351 ~L~l~~c~~l~~l-~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 428 (526)
.|++++ .+++. +..+. .+++|++|++++|. +++.....++..+++|++|++++|+. ++... ......+
T Consensus 436 ~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~------~~~~~~l 505 (594)
T 2p1m_B 436 RLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL------LANASKL 505 (594)
T ss_dssp EEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH------HHTGGGG
T ss_pred EEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH------HHHHHhC
Confidence 999866 33321 12222 36789999998874 54443333446688999999988863 22211 0011347
Q ss_pred cccceeecccccccceecCCCccCCCCCccEEEEcC
Q 009754 429 KELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQ 464 (526)
Q Consensus 429 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 464 (526)
++|+.|++++|+. +.-........+|.|+...+..
T Consensus 506 ~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 506 ETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp GGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred CCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 8899999998865 2221111112367776655543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=8.4e-17 Score=157.87 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=110.5
Q ss_pred hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccc
Q 009754 141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL 220 (526)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 220 (526)
..+..+++|++|+++++. ++.++. ..+++|++|++++| .++.+ +...+..+++|++|++++|. +......
T Consensus 94 ~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 163 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQ-LKELPE------KMPKTLQELRVHEN-EITKV-RKSVFNGLNQMIVVELGTNP-LKSSGIE 163 (330)
T ss_dssp TTTTTCTTCCEEECCSSC-CSBCCS------SCCTTCCEEECCSS-CCCBB-CHHHHTTCTTCCEEECCSSC-CCGGGBC
T ss_pred HHhcCCCCCCEEECCCCc-CCccCh------hhcccccEEECCCC-ccccc-CHhHhcCCccccEEECCCCc-CCccCcC
Confidence 344456667777776654 333222 23467888888777 34444 44447778888888887773 3221110
Q ss_pred cccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchh
Q 009754 221 EEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEE 300 (526)
Q Consensus 221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~ 300 (526)
.+ .+..+++|+.|+++++ .++.++.. .+++|++|+++++ +++...+..+
T Consensus 164 ~~-------~~~~l~~L~~L~l~~n-~l~~l~~~-----~~~~L~~L~l~~n-~l~~~~~~~~----------------- 212 (330)
T 1xku_A 164 NG-------AFQGMKKLSYIRIADT-NITTIPQG-----LPPSLTELHLDGN-KITKVDAASL----------------- 212 (330)
T ss_dssp TT-------GGGGCTTCCEEECCSS-CCCSCCSS-----CCTTCSEEECTTS-CCCEECTGGG-----------------
T ss_pred hh-------hccCCCCcCEEECCCC-ccccCCcc-----ccccCCEEECCCC-cCCccCHHHh-----------------
Confidence 00 3455677777777775 34444322 2367777777774 4444433322
Q ss_pred hhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecc
Q 009754 301 NFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (526)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (526)
..+++|+.|+++++ .++.++...+ ..+++|+.|++++| .++.+|.++..+++|++|++++
T Consensus 213 ---------------~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 213 ---------------KGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp ---------------TTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS
T ss_pred ---------------cCCCCCCEEECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC
Confidence 23467777777774 3555544333 56677777777776 4667777777777777777777
Q ss_pred ccCcccccc
Q 009754 381 CHGLINLLT 389 (526)
Q Consensus 381 c~~l~~l~~ 389 (526)
+ .++.++.
T Consensus 273 N-~i~~~~~ 280 (330)
T 1xku_A 273 N-NISAIGS 280 (330)
T ss_dssp S-CCCCCCT
T ss_pred C-cCCccCh
Confidence 4 4555554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=3.7e-17 Score=160.55 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=189.9
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccc-ccCc
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHGI 105 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~ 105 (526)
.+++.++++++ .+..+|..+ .+++++|++.++. ++...... ...+++|+.|++++|. ++.+ |..+
T Consensus 33 c~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~ 98 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKEI----------SPDTTLLDLQNND-ISELRKDD-FKGLQHLYALVLVNNK-ISKIHEKAF 98 (332)
T ss_dssp EETTEEECCSS-CCSSCCSCC----------CTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSC-CCEECGGGS
T ss_pred ccCCEEECCCC-CccccCCCC----------CCCCeEEECCCCc-CCccCHhH-hhCCCCCcEEECCCCc-cCccCHhHh
Confidence 36888888885 677887654 3578888888753 55554432 3468889999998885 4544 5667
Q ss_pred ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecC
Q 009754 106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC 185 (526)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 185 (526)
..+++|++|++++ +.+..++..+. ++|++|+++++. ++.+.... ...+++|++|+++++
T Consensus 99 ~~l~~L~~L~L~~---------------n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 99 SPLRKLQKLYISK---------------NHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGN 157 (332)
T ss_dssp TTCTTCCEEECCS---------------SCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSC
T ss_pred hCcCCCCEEECCC---------------CcCCccCcccc--ccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCC
Confidence 7788899999883 33334444433 789999998876 43332211 145789999999988
Q ss_pred CCcc-cCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCc
Q 009754 186 TNMS-SAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPEL 264 (526)
Q Consensus 186 ~~l~-~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 264 (526)
.... ...+ ..+..+ +|++|++++| .++.++. ..+++|+.|+++++ .++.++. ..+..+++|
T Consensus 158 ~l~~~~~~~-~~~~~l-~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n-~i~~~~~--~~l~~l~~L 219 (332)
T 2ft3_A 158 PLENSGFEP-GAFDGL-KLNYLRISEA-KLTGIPK------------DLPETLNELHLDHN-KIQAIEL--EDLLRYSKL 219 (332)
T ss_dssp CCBGGGSCT-TSSCSC-CCSCCBCCSS-BCSSCCS------------SSCSSCSCCBCCSS-CCCCCCT--TSSTTCTTC
T ss_pred ccccCCCCc-ccccCC-ccCEEECcCC-CCCccCc------------cccCCCCEEECCCC-cCCccCH--HHhcCCCCC
Confidence 5321 1222 225556 8999999988 5666543 23478999999986 4454421 126688999
Q ss_pred ceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhh
Q 009754 265 QHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNK 344 (526)
Q Consensus 265 ~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 344 (526)
++|+++++ ++...++..+ ..+++|+.|+++++ .++.++... .
T Consensus 220 ~~L~L~~N-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~l~~lp~~l----~ 261 (332)
T 2ft3_A 220 YRLGLGHN-QIRMIENGSL--------------------------------SFLPTLRELHLDNN-KLSRVPAGL----P 261 (332)
T ss_dssp SCCBCCSS-CCCCCCTTGG--------------------------------GGCTTCCEEECCSS-CCCBCCTTG----G
T ss_pred CEEECCCC-cCCcCChhHh--------------------------------hCCCCCCEEECCCC-cCeecChhh----h
Confidence 99999985 5665544333 23489999999986 566776554 7
Q ss_pred hhcccceeEeccCcCccccCCC-CC------CCCCCCEEeeccccCcc-ccccchhhhhccCCceEEEeccc
Q 009754 345 AFANLESLEISECSKLQKLVPP-SW------HLENLEALEVSKCHGLI-NLLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 345 ~l~~L~~L~l~~c~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
.+++|+.|++++++ ++.++.. +. ..++|+.+++.+++... .+++. .+..+++|+.++++++.
T Consensus 262 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~-~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA-TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-GGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcc-cccccchhhhhhccccc
Confidence 88999999999874 6666432 21 14678888888865321 23332 34567788888877653
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=6.7e-17 Score=158.58 Aligned_cols=291 Identities=12% Similarity=0.149 Sum_probs=187.3
Q ss_pred cCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccc-ccC
Q 009754 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHG 104 (526)
Q Consensus 26 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~ 104 (526)
..+++.++++++ .+..+|..+ .+++++|+++++ .+++..... ...+++|+.|++++|. ++.+ |..
T Consensus 30 ~c~l~~l~~~~~-~l~~lp~~~----------~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~ 95 (330)
T 1xku_A 30 QCHLRVVQCSDL-GLEKVPKDL----------PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINNK-ISKISPGA 95 (330)
T ss_dssp EEETTEEECTTS-CCCSCCCSC----------CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CCCBCTTT
T ss_pred cCCCeEEEecCC-CccccCccC----------CCCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCCc-CCeeCHHH
Confidence 346888888885 677777643 357888888875 455554433 3468889999998884 4444 666
Q ss_pred cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEec
Q 009754 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD 184 (526)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 184 (526)
+..+++|++|++++ +.+..++..+ +++|++|+++++. ++.+.... ...+++|++|++++
T Consensus 96 ~~~l~~L~~L~Ls~---------------n~l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 96 FAPLVKLERLYLSK---------------NQLKELPEKM--PKTLQELRVHENE-ITKVRKSV---FNGLNQMIVVELGT 154 (330)
T ss_dssp TTTCTTCCEEECCS---------------SCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHH---HTTCTTCCEEECCS
T ss_pred hcCCCCCCEEECCC---------------CcCCccChhh--cccccEEECCCCc-ccccCHhH---hcCCccccEEECCC
Confidence 77788899999883 2333444433 2789999998876 33221110 14578999999998
Q ss_pred CCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCc
Q 009754 185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPEL 264 (526)
Q Consensus 185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 264 (526)
+.....-.....+..+++|++|++++| .++.++. ..+++|+.|+++++. ++.+. ...+..+++|
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n~-l~~~~--~~~~~~l~~L 218 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ------------GLPPSLTELHLDGNK-ITKVD--AASLKGLNNL 218 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS------------SCCTTCSEEECTTSC-CCEEC--TGGGTTCTTC
T ss_pred CcCCccCcChhhccCCCCcCEEECCCC-ccccCCc------------cccccCCEEECCCCc-CCccC--HHHhcCCCCC
Confidence 854221112233788999999999988 5665543 234899999999874 55442 1126688999
Q ss_pred ceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhh
Q 009754 265 QHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNK 344 (526)
Q Consensus 265 ~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 344 (526)
++|+++++ +++..++..+ ..+++|+.|+++++ .++.++... .
T Consensus 219 ~~L~Ls~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~l~~lp~~l----~ 260 (330)
T 1xku_A 219 AKLGLSFN-SISAVDNGSL--------------------------------ANTPHLRELHLNNN-KLVKVPGGL----A 260 (330)
T ss_dssp CEEECCSS-CCCEECTTTG--------------------------------GGSTTCCEEECCSS-CCSSCCTTT----T
T ss_pred CEEECCCC-cCceeChhhc--------------------------------cCCCCCCEEECCCC-cCccCChhh----c
Confidence 99999985 5665543332 23489999999986 466666554 7
Q ss_pred hhcccceeEeccCcCccccCCCCC-------CCCCCCEEeeccccCcc-ccccchhhhhccCCceEEEecc
Q 009754 345 AFANLESLEISECSKLQKLVPPSW-------HLENLEALEVSKCHGLI-NLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 345 ~l~~L~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c 407 (526)
.+++|+.|++++++ ++.++.... ..++|+.+++.+.+... .+++. ....+++++.++++++
T Consensus 261 ~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC---
T ss_pred cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCcc-ccccccceeEEEeccc
Confidence 78999999999874 666553221 23567778877754221 12222 2344566666666553
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=4e-17 Score=158.79 Aligned_cols=253 Identities=11% Similarity=0.045 Sum_probs=125.6
Q ss_pred CCCceEEeccccccc---EeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc
Q 009754 27 SSLVNLNVSRCDKIE---EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~---~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 103 (526)
.++++|+++++ .+. .+|..+.+ +++|++|+++++..+....+.. ...+++|++|+++++..-..+|.
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~--------l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLAN--------LPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGG--------CTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCC-CccCCcccChhHhC--------CCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCH
Confidence 56777777775 344 45665555 6677777776433444322222 33566666666666643334554
Q ss_pred CcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEe
Q 009754 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD 183 (526)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 183 (526)
.+..+++|++|++++ +.....++..+.. +++|++|+++
T Consensus 120 ~~~~l~~L~~L~Ls~--------------N~l~~~~p~~~~~----------------------------l~~L~~L~L~ 157 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSY--------------NALSGTLPPSISS----------------------------LPNLVGITFD 157 (313)
T ss_dssp GGGGCTTCCEEECCS--------------SEEESCCCGGGGG----------------------------CTTCCEEECC
T ss_pred HHhCCCCCCEEeCCC--------------CccCCcCChHHhc----------------------------CCCCCeEECc
Confidence 455555555555552 1111122333333 4455555555
Q ss_pred cCCCcccCCChHHHhcCC-CCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC
Q 009754 184 DCTNMSSAIPANLLRCLN-NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP 262 (526)
Q Consensus 184 ~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 262 (526)
+|.....+ |.. +..++ .|++|++++|.....++. .+..++ |+.|+++++.--...+.. +..++
T Consensus 158 ~N~l~~~~-p~~-l~~l~~~L~~L~L~~N~l~~~~~~----------~~~~l~-L~~L~Ls~N~l~~~~~~~---~~~l~ 221 (313)
T 1ogq_A 158 GNRISGAI-PDS-YGSFSKLFTSMTISRNRLTGKIPP----------TFANLN-LAFVDLSRNMLEGDASVL---FGSDK 221 (313)
T ss_dssp SSCCEEEC-CGG-GGCCCTTCCEEECCSSEEEEECCG----------GGGGCC-CSEEECCSSEEEECCGGG---CCTTS
T ss_pred CCcccCcC-CHH-HhhhhhcCcEEECcCCeeeccCCh----------HHhCCc-ccEEECcCCcccCcCCHH---HhcCC
Confidence 54221122 222 44444 556666655532223332 222233 566666554221111111 44556
Q ss_pred CcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce-EecccCCh
Q 009754 263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ-HLWKENDE 341 (526)
Q Consensus 263 ~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~ 341 (526)
+|+.|+++++ +++...+. ...+++|++|+++++. ++ .++...
T Consensus 222 ~L~~L~L~~N-~l~~~~~~---------------------------------~~~l~~L~~L~Ls~N~-l~~~~p~~l-- 264 (313)
T 1ogq_A 222 NTQKIHLAKN-SLAFDLGK---------------------------------VGLSKNLNGLDLRNNR-IYGTLPQGL-- 264 (313)
T ss_dssp CCSEEECCSS-EECCBGGG---------------------------------CCCCTTCCEEECCSSC-CEECCCGGG--
T ss_pred CCCEEECCCC-ceeeecCc---------------------------------ccccCCCCEEECcCCc-ccCcCChHH--
Confidence 6666666663 23221111 1233666777776643 33 333322
Q ss_pred hhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCcccc
Q 009754 342 SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL 387 (526)
Q Consensus 342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 387 (526)
..+++|+.|++++++....+|.. ..+++|+.+++.+++.+...
T Consensus 265 --~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 265 --TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp --GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred --hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 66677777777776543355544 66777777777776555443
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=1.2e-19 Score=186.83 Aligned_cols=293 Identities=19% Similarity=0.110 Sum_probs=147.7
Q ss_pred HhhhhhcCCCCCcEEEeecCCCCceeccCCCCC---cCCCCCccEEEEecCCCcccCCC---hHHHhcCCCCCeeeeccc
Q 009754 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP---VSFFNNLARLVVDDCTNMSSAIP---ANLLRCLNNLQWLEVRNC 211 (526)
Q Consensus 138 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~c~~l~~~~~---~~~l~~l~~L~~L~l~~~ 211 (526)
.++..+..+++|++|+++++. +++..... +. ....++|++|++++|. ++.... ...+..+++|++|++++|
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 445555566666666666655 33111000 00 0123467777777763 332111 223556778888888777
Q ss_pred cccchhc-c-ccccccccCCCCCCCCccceEecCCCccccc-----cccCCCccccCCCcceEeeecCCCCccccCcccc
Q 009754 212 DSIEEVL-H-LEEQNADKEHRGPLFPKLYGLRLIDLPKLKR-----FCNFTGNIIELPELQHLTIQNCPDMETFISNSVV 284 (526)
Q Consensus 212 ~~l~~~~-~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~ 284 (526)
. +.... . +.. . .....++|+.|+++++. ++. ++.. +..+++|++|++++| ++.+.....+.
T Consensus 181 ~-i~~~~~~~l~~--~----l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~---l~~~~~L~~L~Ls~n-~l~~~~~~~l~ 248 (461)
T 1z7x_W 181 D-INEAGVRVLCQ--G----LKDSPCQLEALKLESCG-VTSDNCRDLCGI---VASKASLRELALGSN-KLGDVGMAELC 248 (461)
T ss_dssp B-CHHHHHHHHHH--H----HHHSCCCCCEEECTTSC-CBTTHHHHHHHH---HHHCTTCCEEECCSS-BCHHHHHHHHH
T ss_pred C-cchHHHHHHHH--H----HhcCCCCceEEEccCCC-CcHHHHHHHHHH---HHhCCCccEEeccCC-cCChHHHHHHH
Confidence 4 43321 1 000 0 00124577888887763 332 1111 446778888888875 45443211100
Q ss_pred eeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCCh-hhhhhcccceeEeccCcCccc-
Q 009754 285 HVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECSKLQK- 362 (526)
Q Consensus 285 ~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~- 362 (526)
. .+ ...+++|+.|+++++ .++......++ ....+++|++|+++++. +++
T Consensus 249 ~---------------~~------------~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 299 (461)
T 1z7x_W 249 P---------------GL------------LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE 299 (461)
T ss_dssp H---------------HH------------TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH
T ss_pred H---------------HH------------hcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchH
Confidence 0 00 012367777777775 34331110000 11456777888877764 321
Q ss_pred ----cCCCC-CCCCCCCEEeeccccCccccccc---hhhhhccCCceEEEecccCcceeeccCCccccccc-ccccccce
Q 009754 363 ----LVPPS-WHLENLEALEVSKCHGLINLLTF---STSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC-NVFKELRY 433 (526)
Q Consensus 363 ----l~~~~-~~l~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~ 433 (526)
+...+ ...++|++|++++|. +++.... ..+..+++|++|+++++ .+++.... ...... ...++|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~---~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR---ELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH---HHHHHHTSTTCCCCE
T ss_pred HHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH---HHHHHHcCCCCceEE
Confidence 11111 123578888888864 4433211 12345688888888876 34433210 000000 11468888
Q ss_pred eecccccccc-----eecCCCccCCCCCccEEEEcCCCCcee---------ccCCCCCCCCcceEEe
Q 009754 434 LELYCLPSLT-----SFCLGNYALEFPSLKQVVVRQCPKMKI---------FSQGVLDTPMLNKVNV 486 (526)
Q Consensus 434 L~l~~c~~l~-----~~~~~~~~~~~~~L~~L~l~~C~~l~~---------lp~~~~~~~~L~~l~l 486 (526)
|++++| .++ .++..... +++|++|++++|+ ++. +|. ..++|+.|.+
T Consensus 375 L~L~~n-~i~~~~~~~l~~~l~~--~~~L~~L~l~~N~-i~~~~~~~l~~~l~~---~~~~L~~L~~ 434 (461)
T 1z7x_W 375 LWLADC-DVSDSSCSSLAATLLA--NHSLRELDLSNNC-LGDAGILQLVESVRQ---PGCLLEQLVL 434 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHHH--CCCCCEEECCSSS-CCHHHHHHHHHHHTS---TTCCCCEEEC
T ss_pred EECCCC-CCChhhHHHHHHHHHh--CCCccEEECCCCC-CCHHHHHHHHHHhcc---CCcchhheee
Confidence 888887 454 34444333 7888899888864 332 232 2346777777
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.1e-15 Score=161.37 Aligned_cols=234 Identities=18% Similarity=0.150 Sum_probs=126.4
Q ss_pred CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (526)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 254 (526)
++|++|++++| .++.+++ .+++|++|++++| .++.++. .+++|+.|+++++ .++.++.
T Consensus 61 ~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~-------------~l~~L~~L~Ls~N-~l~~l~~- 118 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV-------------LPPGLLELSIFSN-PLTHLPA- 118 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC-------------CCTTCCEEEECSC-CCCCCCC-
T ss_pred CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC-------------CCCCCCEEECcCC-cCCCCCC-
Confidence 45555555555 3333322 3455555555555 2333321 3455555555553 2333321
Q ss_pred CCccccCCCcceEeeecCCCCcccc--CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754 255 TGNIIELPELQHLTIQNCPDMETFI--SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (526)
Q Consensus 255 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 332 (526)
.+++|+.|+++++ +++.++ ..+|+.|+++++.+..++. .+++|+.|++.++ .+
T Consensus 119 -----~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~~------------------~~~~L~~L~L~~N-~l 173 (622)
T 3g06_A 119 -----LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPA------------------LPSELCKLWAYNN-QL 173 (622)
T ss_dssp -----CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSS-CC
T ss_pred -----CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcCC------------------ccCCCCEEECCCC-CC
Confidence 3455555555553 344443 2445555555554443321 1256677777663 34
Q ss_pred eEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcce
Q 009754 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQ 412 (526)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 412 (526)
+.++ ..+++|+.|++++| .++.+|.. +++|+.|+++++ .++.++. .+++|++|+++++ .++.
T Consensus 174 ~~l~-------~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N-~L~~ 235 (622)
T 3g06_A 174 TSLP-------MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN-RLTS 235 (622)
T ss_dssp SCCC-------CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSC
T ss_pred CCCc-------ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCC-----CCCCCCEEEccCC-ccCc
Confidence 4444 23466777777665 35555432 356777777764 4555443 2356777777665 4444
Q ss_pred eeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCC
Q 009754 413 IIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEK 491 (526)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~ 491 (526)
++. .+++|+.|+++++ .++.++. . +++|++|++++| +++.+|..+..+++|+.|++++|.+
T Consensus 236 lp~-----------~l~~L~~L~Ls~N-~L~~lp~---~--~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 236 LPV-----------LPSELKELMVSGN-RLTSLPM---L--PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCC-----------CCTTCCEEECCSS-CCSCCCC---C--CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCC-----------CCCcCcEEECCCC-CCCcCCc---c--cccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 432 3567777777765 5666655 2 567777777665 5556666665667777777755554
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=7.6e-16 Score=162.53 Aligned_cols=256 Identities=18% Similarity=0.126 Sum_probs=157.3
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 106 (526)
.+++.|+++++ .+..+|..+ .++|++|++.++ .++.++. .+++|+.|++++|. ++.+|.
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC---
T ss_pred CCCcEEEecCC-CcCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC---
Confidence 35777777774 567776643 246777777765 3544433 36777777777773 666654
Q ss_pred cCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCC
Q 009754 107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT 186 (526)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 186 (526)
.+++|++|++++ +.+..++. .+++|+.|+++++. ++.+ + ..+++|++|++++|
T Consensus 99 ~l~~L~~L~Ls~---------------N~l~~l~~---~l~~L~~L~L~~N~-l~~l------p-~~l~~L~~L~Ls~N- 151 (622)
T 3g06_A 99 LPPGLLELSIFS---------------NPLTHLPA---LPSGLCKLWIFGNQ-LTSL------P-VLPPGLQELSVSDN- 151 (622)
T ss_dssp CCTTCCEEEECS---------------CCCCCCCC---CCTTCCEEECCSSC-CSCC------C-CCCTTCCEEECCSS-
T ss_pred CCCCCCEEECcC---------------CcCCCCCC---CCCCcCEEECCCCC-CCcC------C-CCCCCCCEEECcCC-
Confidence 567777777762 22233333 45778888887765 3332 2 23478888888887
Q ss_pred CcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcce
Q 009754 187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQH 266 (526)
Q Consensus 187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 266 (526)
.++.++. .+++|+.|++++| .++.++ ..+++|+.|+++++ .++.++. .+++|+.
T Consensus 152 ~l~~l~~-----~~~~L~~L~L~~N-~l~~l~-------------~~~~~L~~L~Ls~N-~l~~l~~------~~~~L~~ 205 (622)
T 3g06_A 152 QLASLPA-----LPSELCKLWAYNN-QLTSLP-------------MLPSGLQELSVSDN-QLASLPT------LPSELYK 205 (622)
T ss_dssp CCSCCCC-----CCTTCCEEECCSS-CCSCCC-------------CCCTTCCEEECCSS-CCSCCCC------CCTTCCE
T ss_pred cCCCcCC-----ccCCCCEEECCCC-CCCCCc-------------ccCCCCcEEECCCC-CCCCCCC------ccchhhE
Confidence 4554422 3567888888877 455543 23678888888875 3554432 3467888
Q ss_pred EeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhh
Q 009754 267 LTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAF 346 (526)
Q Consensus 267 L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l 346 (526)
|++++| +++.++. .+++|+.|+++++ .++.++ ..+
T Consensus 206 L~L~~N-~l~~l~~------------------------------------~~~~L~~L~Ls~N-~L~~lp-------~~l 240 (622)
T 3g06_A 206 LWAYNN-RLTSLPA------------------------------------LPSGLKELIVSGN-RLTSLP-------VLP 240 (622)
T ss_dssp EECCSS-CCSSCCC------------------------------------CCTTCCEEECCSS-CCSCCC-------CCC
T ss_pred EECcCC-cccccCC------------------------------------CCCCCCEEEccCC-ccCcCC-------CCC
Confidence 888774 4444331 1256777777664 454444 334
Q ss_pred cccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754 347 ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 347 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
++|+.|++++| .++.+|. .+++|+.|++++| .++.+|. .+..+++|+.|++++++
T Consensus 241 ~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 241 SELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred CcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 67777777765 4566655 4567777777775 5556654 24667777777777764
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=4.6e-17 Score=158.40 Aligned_cols=236 Identities=14% Similarity=0.079 Sum_probs=136.4
Q ss_pred hhhcCCCCCcEEEeecCCCCc-eeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc
Q 009754 141 EEMIGFRDMEYLQLSYFPHLK-EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH 219 (526)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 219 (526)
..+..+++|++|+++++..+. .++... ..+++|++|++++|.....+ |.. +..+++|++|++++|.....++.
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~-p~~-~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHTNVSGAI-PDF-LSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEECCEEEC-CGG-GGGCTTCCEEECCSSEEESCCCG
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCCeeCCcC-CHH-HhCCCCCCEEeCCCCccCCcCCh
Confidence 344445555555555321122 122222 34666777777666322232 322 66777777777777743324433
Q ss_pred ccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC-CcceEeeecCCCCccccCcccceeeecCCCCccccc
Q 009754 220 LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP-ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS 298 (526)
Q Consensus 220 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~ 298 (526)
.+..+++|+.|+++++.--..++.. +..++ +|++|+++++ ++....+..+.
T Consensus 144 ----------~~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~~L~~L~L~~N-~l~~~~~~~~~-------------- 195 (313)
T 1ogq_A 144 ----------SISSLPNLVGITFDGNRISGAIPDS---YGSFSKLFTSMTISRN-RLTGKIPPTFA-------------- 195 (313)
T ss_dssp ----------GGGGCTTCCEEECCSSCCEEECCGG---GGCCCTTCCEEECCSS-EEEEECCGGGG--------------
T ss_pred ----------HHhcCCCCCeEECcCCcccCcCCHH---HhhhhhcCcEEECcCC-eeeccCChHHh--------------
Confidence 3455677777777775432233332 45665 7777777774 44433332221
Q ss_pred hhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEee
Q 009754 299 EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEV 378 (526)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 378 (526)
.++ |+.|+++++ .++......+ ..+++|+.|+++++. ++..++.+..+++|++|++
T Consensus 196 ------------------~l~-L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 196 ------------------NLN-LAFVDLSRN-MLEGDASVLF---GSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDL 251 (313)
T ss_dssp ------------------GCC-CSEEECCSS-EEEECCGGGC---CTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEEC
T ss_pred ------------------CCc-ccEEECcCC-cccCcCCHHH---hcCCCCCEEECCCCc-eeeecCcccccCCCCEEEC
Confidence 123 777777775 3443333322 667888888888764 4433344677788999999
Q ss_pred ccccCcc-ccccchhhhhccCCceEEEecccCcc-eeeccCCcccccccccccccceeecccccccceecC
Q 009754 379 SKCHGLI-NLLTFSTSESLVNLGRMMIADCKMIE-QIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCL 447 (526)
Q Consensus 379 ~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 447 (526)
+++. +. .+|. .+..+++|++|+++++. ++ .++. . ..+++|+.+++.+++.+...|.
T Consensus 252 s~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~-l~~~ip~---~------~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 252 RNNR-IYGTLPQ--GLTQLKFLHSLNVSFNN-LCGEIPQ---G------GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CSSC-CEECCCG--GGGGCTTCCEEECCSSE-EEEECCC---S------TTGGGSCGGGTCSSSEEESTTS
T ss_pred cCCc-ccCcCCh--HHhcCcCCCEEECcCCc-ccccCCC---C------ccccccChHHhcCCCCccCCCC
Confidence 8864 44 4443 34678889999998874 43 3332 1 3578899999988876665443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.3e-16 Score=155.15 Aligned_cols=206 Identities=15% Similarity=0.116 Sum_probs=128.2
Q ss_pred CcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc-c
Q 009754 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-H 103 (526)
Q Consensus 25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~ 103 (526)
.++.....+.++ +.+..+|..+ .++|++|+++++ .++..+... ...+++|+.|+++++ .++.++ .
T Consensus 29 ~C~~~~~c~~~~-~~l~~iP~~~----------~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~ 94 (353)
T 2z80_A 29 SCDRNGICKGSS-GSLNSIPSGL----------TEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTIEED 94 (353)
T ss_dssp EECTTSEEECCS-TTCSSCCTTC----------CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTT
T ss_pred CCCCCeEeeCCC-CCcccccccc----------cccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCccCHh
Confidence 355555677777 3677777653 347888888864 355554432 346888888888887 455543 4
Q ss_pred CcccCCCeeeEEecccccccceeeeccccchhhHHhhhh-hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (526)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l 182 (526)
.+..+++|++|++++ +.+..++.. +..+++|++|+++++. ++.+.... ....+++|++|++
T Consensus 95 ~~~~l~~L~~L~Ls~---------------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~--~~~~l~~L~~L~l 156 (353)
T 2z80_A 95 SFSSLGSLEHLDLSY---------------NYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETS--LFSHLTKLQILRV 156 (353)
T ss_dssp TTTTCTTCCEEECCS---------------SCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSC--SCTTCTTCCEEEE
T ss_pred hcCCCCCCCEEECCC---------------CcCCcCCHhHhCCCccCCEEECCCCC-CcccCchh--hhccCCCCcEEEC
Confidence 466678888888872 333344433 5677888888888775 43332200 0145778888888
Q ss_pred ecCCCcccCCChHHHhcCCCCCeeeeccccccchh-ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC
Q 009754 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV-LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL 261 (526)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 261 (526)
++|..++.+++. .+..+++|++|++++|. +..+ +. .+..+++|++|+++++. ++.++.. ....+
T Consensus 157 ~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~----------~l~~l~~L~~L~l~~n~-l~~~~~~--~~~~~ 221 (353)
T 2z80_A 157 GNMDTFTKIQRK-DFAGLTFLEELEIDASD-LQSYEPK----------SLKSIQNVSHLILHMKQ-HILLLEI--FVDVT 221 (353)
T ss_dssp EESSSCCEECTT-TTTTCCEEEEEEEEETT-CCEECTT----------TTTTCSEEEEEEEECSC-STTHHHH--HHHHT
T ss_pred CCCccccccCHH-HccCCCCCCEEECCCCC-cCccCHH----------HHhccccCCeecCCCCc-cccchhh--hhhhc
Confidence 887555555332 36778888888888774 3333 22 45567788888887754 3444321 12347
Q ss_pred CCcceEeeecCCCCccc
Q 009754 262 PELQHLTIQNCPDMETF 278 (526)
Q Consensus 262 ~~L~~L~l~~c~~l~~~ 278 (526)
++|+.|+++++ +++..
T Consensus 222 ~~L~~L~L~~n-~l~~~ 237 (353)
T 2z80_A 222 SSVECLELRDT-DLDTF 237 (353)
T ss_dssp TTEEEEEEESC-BCTTC
T ss_pred ccccEEECCCC-ccccc
Confidence 78888888874 44443
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=5.3e-16 Score=153.64 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=168.9
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 253 (526)
.++|++|+++++. ++.+++ ..+..+++|++|++++| .++.++.. .+..+++|++|+++++ .++.++.
T Consensus 51 ~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSN-GINTIEED---------SFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp CTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECTT---------TTTTCTTCCEEECCSS-CCSSCCH
T ss_pred cccCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCC-ccCccCHh---------hcCCCCCCCEEECCCC-cCCcCCH
Confidence 4678888888773 555533 23677888888888877 45444210 3556788888888875 3444432
Q ss_pred CCCccccCCCcceEeeecCCCCccccC-cccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754 254 FTGNIIELPELQHLTIQNCPDMETFIS-NSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (526)
Q Consensus 254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 332 (526)
. .+..+++|++|+++++ +++.++. .. ...+++|+.|+++++..+
T Consensus 118 ~--~~~~l~~L~~L~L~~n-~l~~l~~~~~--------------------------------~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 118 S--WFKPLSSLTFLNLLGN-PYKTLGETSL--------------------------------FSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp H--HHTTCTTCSEEECTTC-CCSSSCSSCS--------------------------------CTTCTTCCEEEEEESSSC
T ss_pred h--HhCCCccCCEEECCCC-CCcccCchhh--------------------------------hccCCCCcEEECCCCccc
Confidence 1 1456788888888874 4554432 11 134588888988887667
Q ss_pred eEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcce
Q 009754 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQ 412 (526)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 412 (526)
+.++...+ ..+++|+.|+++++..-...|..+..+++|++|+++++ .++.++.. ....+++|++|+++++. ++.
T Consensus 163 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~-~~~~~~~L~~L~L~~n~-l~~ 236 (353)
T 2z80_A 163 TKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEI-FVDVTSSVECLELRDTD-LDT 236 (353)
T ss_dssp CEECTTTT---TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHHHH-HHHHTTTEEEEEEESCB-CTT
T ss_pred cccCHHHc---cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccchhh-hhhhcccccEEECCCCc-ccc
Confidence 77755444 67889999999987644444778888899999999986 45655542 34568899999998873 443
Q ss_pred eeccCCcccccccccccccceeeccccc----ccceecCCCccCCCCCccEEEEcCCCCceeccCCC-CCCCCcceEEee
Q 009754 413 IIQLQVGEEAKDCNVFKELRYLELYCLP----SLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGV-LDTPMLNKVNVT 487 (526)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~----~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~-~~~~~L~~l~l~ 487 (526)
....+ .......+.++.+++.++. .+..++..... +++|++|++++| +++.+|... ..+++|+.++++
T Consensus 237 ~~~~~----l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~--l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 237 FHFSE----LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHHHT--CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred ccccc----cccccccchhhccccccccccCcchhhhHHHHhc--ccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 32210 0001224556666665542 12234433333 899999999986 777888764 678999999997
Q ss_pred ccCCCC
Q 009754 488 EEEKDD 493 (526)
Q Consensus 488 ~~~~~~ 493 (526)
++++..
T Consensus 310 ~N~~~~ 315 (353)
T 2z80_A 310 TNPWDC 315 (353)
T ss_dssp SSCBCC
T ss_pred CCCccC
Confidence 776653
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=3.9e-15 Score=152.60 Aligned_cols=207 Identities=21% Similarity=0.204 Sum_probs=104.6
Q ss_pred hhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccc
Q 009754 142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE 221 (526)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 221 (526)
.+..+++|+.|+++++. ++.+.... ...+++|++|++++| .++.+ +...+..+++|++|++++| .++.++..
T Consensus 94 ~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~- 165 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNS-IRQIEVGA---FNGLASLNTLELFDN-WLTVI-PSGAFEYLSKLRELWLRNN-PIESIPSY- 165 (452)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCSBC-CTTTSSSCTTCCEEECCSC-CCCEECTT-
T ss_pred HcCCCCCCCEEECCCCc-cCCcChhh---ccCcccCCEEECCCC-cCCcc-ChhhhcccCCCCEEECCCC-CcceeCHh-
Confidence 34455666666666554 33222111 034566666666665 34443 2333556666666666666 34433321
Q ss_pred ccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhh
Q 009754 222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN 301 (526)
Q Consensus 222 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~ 301 (526)
.+..+++|+.|+++++..+..++. ..+..+++|+.|++++| +++..+.
T Consensus 166 --------~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n-~l~~~~~--------------------- 213 (452)
T 3zyi_A 166 --------AFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMC-NIKDMPN--------------------- 213 (452)
T ss_dssp --------TTTTCTTCCEEECCCCTTCCEECT--TTTTTCTTCCEEECTTS-CCSSCCC---------------------
T ss_pred --------HHhcCCcccEEeCCCCCCccccCh--hhccCCCCCCEEECCCC-ccccccc---------------------
Confidence 344566666666666655555532 12445666666666664 3433320
Q ss_pred hhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccc
Q 009754 302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC 381 (526)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 381 (526)
...+++|+.|+++++ .++.+....+ ..+++|+.|+++++..-...+..+..+++|+.|+++++
T Consensus 214 -------------~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 214 -------------LTPLVGLEELEMSGN-HFPEIRPGSF---HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp -------------CTTCTTCCEEECTTS-CCSEECGGGG---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -------------ccccccccEEECcCC-cCcccCcccc---cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 123356666666653 3444433222 45566666666655322222344555566666666664
Q ss_pred cCccccccchhhhhccCCceEEEecc
Q 009754 382 HGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 382 ~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
.++.++.. .+..+++|+.|+++++
T Consensus 277 -~l~~~~~~-~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 277 -NLSSLPHD-LFTPLRYLVELHLHHN 300 (452)
T ss_dssp -CCSCCCTT-SSTTCTTCCEEECCSS
T ss_pred -cCCccChH-HhccccCCCEEEccCC
Confidence 45555443 2345566666666554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=4.1e-15 Score=151.81 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=97.1
Q ss_pred hcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754 143 MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE 222 (526)
Q Consensus 143 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 222 (526)
+..+++|+.|+++++. ++.+.... ...+++|++|++++| .++.+ +...+..+++|++|++++| .++.++..
T Consensus 84 ~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~-- 154 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNH-IRTIEIGA---FNGLANLNTLELFDN-RLTTI-PNGAFVYLSKLKELWLRNN-PIESIPSY-- 154 (440)
T ss_dssp TSSCSSCCEEECCSSC-CCEECGGG---GTTCSSCCEEECCSS-CCSSC-CTTTSCSCSSCCEEECCSC-CCCEECTT--
T ss_pred hhCCCCCCEEECCCCc-CCccChhh---ccCCccCCEEECCCC-cCCee-CHhHhhccccCceeeCCCC-cccccCHH--
Confidence 3445555555555543 22221110 023455556655555 33333 2222455556666666555 23333210
Q ss_pred cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhh
Q 009754 223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENF 302 (526)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~ 302 (526)
.+..+++|+.|+++++..+..++. ..+..+++|++|++++| +++.++.
T Consensus 155 -------~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n-~l~~~~~---------------------- 202 (440)
T 3zyj_A 155 -------AFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMC-NLREIPN---------------------- 202 (440)
T ss_dssp -------TTTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTS-CCSSCCC----------------------
T ss_pred -------HhhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecCCCC-cCccccc----------------------
Confidence 334455666666655555444422 11445555666666553 3333220
Q ss_pred hhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCCEEeeccc
Q 009754 303 LLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKC 381 (526)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c 381 (526)
...+++|+.|+++++ .++.+....+ ..+++|+.|++.++. ++.+ +..+..+++|++|+++++
T Consensus 203 ------------~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 203 ------------LTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp ------------CTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS
T ss_pred ------------cCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC
Confidence 113355666666554 3444433332 455566666665543 3332 334455566666666653
Q ss_pred cCccccccchhhhhccCCceEEEecc
Q 009754 382 HGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 382 ~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
.++.++.. .+..+++|+.|+++++
T Consensus 266 -~l~~~~~~-~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 266 -NLTLLPHD-LFTPLHHLERIHLHHN 289 (440)
T ss_dssp -CCCCCCTT-TTSSCTTCCEEECCSS
T ss_pred -CCCccChh-HhccccCCCEEEcCCC
Confidence 45554443 2245566666665553
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=4.6e-15 Score=152.04 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=15.5
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC 211 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (526)
+++|++|++++| .++.+.+ ..+..+++|++|++++|
T Consensus 98 l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 98 LHHLEVLQLGRN-SIRQIEV-GAFNGLASLNTLELFDN 133 (452)
T ss_dssp CTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCC-ccCCcCh-hhccCcccCCEEECCCC
Confidence 444555555444 2333221 12444455555555444
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=8.9e-16 Score=148.83 Aligned_cols=182 Identities=17% Similarity=0.186 Sum_probs=101.3
Q ss_pred CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (526)
.+++|++|+++++. ++.++... ..+++|++|+++++. ++.+++...+..+++|++|++++|......+.
T Consensus 76 ~~~~L~~L~Ls~n~-i~~l~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----- 144 (306)
T 2z66_A 76 GTTSLKYLDLSFNG-VITMSSNF----LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----- 144 (306)
T ss_dssp SCSCCCEEECCSCS-EEEEEEEE----ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTT-----
T ss_pred cccccCEEECCCCc-cccChhhc----CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchh-----
Confidence 45666666666654 33332222 346677777777663 34333323366777777777777632222222
Q ss_pred cccCCCCCCCCccceEecCCCcccc-ccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhh
Q 009754 225 ADKEHRGPLFPKLYGLRLIDLPKLK-RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL 303 (526)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 303 (526)
.+..+++|+.|+++++..-. ..+.. +..+++|++|++++| +++..++..+
T Consensus 145 -----~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~-------------------- 195 (306)
T 2z66_A 145 -----IFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQC-QLEQLSPTAF-------------------- 195 (306)
T ss_dssp -----TTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTS-CCCEECTTTT--------------------
T ss_pred -----hcccCcCCCEEECCCCccccccchhH---HhhCcCCCEEECCCC-CcCCcCHHHh--------------------
Confidence 34556777777777653221 12222 456777777777774 4544433322
Q ss_pred hccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCC-CCCEEeecccc
Q 009754 304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE-NLEALEVSKCH 382 (526)
Q Consensus 304 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~ 382 (526)
..+++|+.|+++++ .++.++...+ ..+++|+.|+++++......+..+..++ +|++|++++++
T Consensus 196 ------------~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 ------------NSLSSLQVLNMSHN-NFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ------------TTCTTCCEEECTTS-CCSBCCSGGG---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ------------cCCCCCCEEECCCC-ccCccChhhc---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 23467777777764 3444433222 5567777777777654444455556663 77777777753
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=5e-15 Score=151.18 Aligned_cols=235 Identities=15% Similarity=0.176 Sum_probs=132.2
Q ss_pred hHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccc
Q 009754 136 IQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE 215 (526)
Q Consensus 136 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (526)
+..+|..+ .++++.|+++++. ++.+.... + ..+++|++|++++| .++.+ +...+..+++|++|++++| .++
T Consensus 55 l~~iP~~~--~~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~L~~n-~l~ 125 (440)
T 3zyj_A 55 LREVPDGI--STNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRN-HIRTI-EIGAFNGLANLNTLELFDN-RLT 125 (440)
T ss_dssp CSSCCSCC--CTTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSS-CCCEE-CGGGGTTCSSCCEEECCSS-CCS
T ss_pred cCcCCCCC--CCCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCC-cCCcc-ChhhccCCccCCEEECCCC-cCC
Confidence 34455443 2667777777665 44332111 1 34677777777776 34444 3333667777777777776 455
Q ss_pred hhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK 295 (526)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~ 295 (526)
.++.. .+..+++|+.|+++++. ++.++. ..+..+++|++|++++|..+..+++..+
T Consensus 126 ~~~~~---------~~~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~------------ 181 (440)
T 3zyj_A 126 TIPNG---------AFVYLSKLKELWLRNNP-IESIPS--YAFNRIPSLRRLDLGELKRLSYISEGAF------------ 181 (440)
T ss_dssp SCCTT---------TSCSCSSCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEECTTTT------------
T ss_pred eeCHh---------HhhccccCceeeCCCCc-ccccCH--HHhhhCcccCEeCCCCCCCcceeCcchh------------
Confidence 44321 34556777777777653 444422 1255667777777777665554443222
Q ss_pred ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCC
Q 009754 296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLE 374 (526)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~ 374 (526)
.++++|+.|+++++ .++.++. . ..+++|+.|+++++. ++.+ +..+..+++|+
T Consensus 182 --------------------~~l~~L~~L~L~~n-~l~~~~~-~----~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 182 --------------------EGLSNLRYLNLAMC-NLREIPN-L----TPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp --------------------TTCSSCCEEECTTS-CCSSCCC-C----TTCSSCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred --------------------hcccccCeecCCCC-cCccccc-c----CCCcccCEEECCCCc-cCccChhhhccCccCC
Confidence 23467777777764 3444432 1 566677777777663 3333 45666677777
Q ss_pred EEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccc
Q 009754 375 ALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLP 440 (526)
Q Consensus 375 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 440 (526)
+|+++++ .++.++.. .+..+++|++|+++++ .++.++. + ....+++|+.|++.++|
T Consensus 235 ~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~---~----~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 235 KLWMIQS-QIQVIERN-AFDNLQSLVEINLAHN-NLTLLPH---D----LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTC-CCCEECTT-SSTTCTTCCEEECTTS-CCCCCCT---T----TTSSCTTCCEEECCSSC
T ss_pred EEECCCC-ceeEEChh-hhcCCCCCCEEECCCC-CCCccCh---h----HhccccCCCEEEcCCCC
Confidence 7777764 45555443 2356677777777665 3444332 0 11235667777776654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=3.4e-16 Score=152.58 Aligned_cols=245 Identities=15% Similarity=0.110 Sum_probs=135.8
Q ss_pred cCCCCCcEEEeecCCCCceec-cCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccc
Q 009754 144 IGFRDMEYLQLSYFPHLKEIW-HGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEE 222 (526)
Q Consensus 144 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 222 (526)
..+++|++|+++++. ++.+. ... ..+++|++|++++|. ++..++ +..+++|++|++++| .++.++
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n-~l~~l~---- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAADL----APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELL---- 96 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHHH----TTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSS-EEEEEE----
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHh----hCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCC-cccccc----
Confidence 345677777777764 33221 111 346777777777763 333323 667777777777776 344433
Q ss_pred cccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhh
Q 009754 223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENF 302 (526)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~ 302 (526)
..++|+.|+++++ .+..++. ..+++|++|+++++ +++..++..+
T Consensus 97 ----------~~~~L~~L~l~~n-~l~~~~~-----~~~~~L~~L~l~~N-~l~~~~~~~~------------------- 140 (317)
T 3o53_A 97 ----------VGPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE------------------- 140 (317)
T ss_dssp ----------ECTTCCEEECCSS-CCSEEEE-----CCCSSCEEEECCSS-CCCSGGGBCT-------------------
T ss_pred ----------CCCCcCEEECCCC-ccCCcCc-----cccCCCCEEECCCC-CCCCccchhh-------------------
Confidence 2367777777765 3444422 24667777777764 4544432221
Q ss_pred hhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecccc
Q 009754 303 LLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH 382 (526)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 382 (526)
..+++|+.|+++++ .++.+....+. ..+++|+.|++++|. ++.++.. ..+++|++|+++++
T Consensus 141 -------------~~l~~L~~L~Ls~N-~l~~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N- 201 (317)
T 3o53_A 141 -------------GCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN- 201 (317)
T ss_dssp -------------GGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-
T ss_pred -------------hccCCCCEEECCCC-CCCcccHHHHh--hccCcCCEEECCCCc-Ccccccc-cccccCCEEECCCC-
Confidence 12367777777764 34444332221 345677777777653 5555332 33667777777774
Q ss_pred CccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccc-ceecCCCccCCCCCccEEE
Q 009754 383 GLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSL-TSFCLGNYALEFPSLKQVV 461 (526)
Q Consensus 383 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~ 461 (526)
.++.++.. +..+++|++|+++++ .++.++. ....+++|+.|++++++-. ..++..... ++.|++++
T Consensus 202 ~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~--~~~L~~l~ 268 (317)
T 3o53_A 202 KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVA 268 (317)
T ss_dssp CCCEECGG--GGGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHT--CHHHHHHH
T ss_pred cCCcchhh--hcccCcccEEECcCC-cccchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhc--cccceEEE
Confidence 45555542 356677777777765 4555433 1124567777777766433 223332222 66666666
Q ss_pred EcCCCCcee
Q 009754 462 VRQCPKMKI 470 (526)
Q Consensus 462 l~~C~~l~~ 470 (526)
+.+++.++.
T Consensus 269 l~~~~~l~~ 277 (317)
T 3o53_A 269 KQTVKKLTG 277 (317)
T ss_dssp HHHHHHHHS
T ss_pred CCCchhccC
Confidence 665555554
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=6e-15 Score=142.95 Aligned_cols=182 Identities=20% Similarity=0.194 Sum_probs=92.4
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 253 (526)
.++|++|+++++ .++.+ +...+..+++|++|++++| .++.+..... ....+++|+.|+++++ .+..++.
T Consensus 27 ~~~l~~L~L~~n-~l~~i-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-------~~~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 27 PSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQ-------SDFGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp CTTCCEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCEEEEEEH-------HHHSCSCCCEEECCSC-SEEEEEE
T ss_pred CCCCCEEECCCC-ccCcc-CHhHhhccccCCEEECCCC-ccCcccCccc-------ccccccccCEEECCCC-ccccChh
Confidence 356777777766 34444 3344567777777777766 3332210000 1223567777777765 3344433
Q ss_pred CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (526)
Q Consensus 254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 333 (526)
. +..+++|++|+++++ +++..++. .....+++|+.|+++++. +.
T Consensus 96 ~---~~~l~~L~~L~l~~n-~l~~~~~~-------------------------------~~~~~l~~L~~L~l~~n~-l~ 139 (306)
T 2z66_A 96 N---FLGLEQLEHLDFQHS-NLKQMSEF-------------------------------SVFLSLRNLIYLDISHTH-TR 139 (306)
T ss_dssp E---EETCTTCCEEECTTS-EEESSTTT-------------------------------TTTTTCTTCCEEECTTSC-CE
T ss_pred h---cCCCCCCCEEECCCC-cccccccc-------------------------------hhhhhccCCCEEECCCCc-CC
Confidence 2 446667777776663 33332210 011234566666666542 33
Q ss_pred EecccCChhhhhhcccceeEeccCcCcc-ccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 334 HLWKENDESNKAFANLESLEISECSKLQ-KLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
......+ ..+++|+.|+++++.... .+|..+..+++|++|+++++ .++.++.. .+..+++|++|+++++
T Consensus 140 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 140 VAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN 209 (306)
T ss_dssp ECSTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS
T ss_pred ccchhhc---ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHH-HhcCCCCCCEEECCCC
Confidence 3332222 455666666666653222 24555566666666666664 34444332 2244555555555554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=1.4e-15 Score=148.25 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=65.7
Q ss_pred cccceeEeccCcCcccc-CCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCccccccc
Q 009754 347 ANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDC 425 (526)
Q Consensus 347 ~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 425 (526)
++|+.|+++++. ++.+ +..+..+++|++|+++++ .+..++...+...+++|++|+++++ .++.+...
T Consensus 120 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------- 187 (317)
T 3o53_A 120 QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ--------- 187 (317)
T ss_dssp SSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC---------
T ss_pred CCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCcccccc---------
Confidence 445555555442 2222 223444555555555553 3444333333334556666666554 24433220
Q ss_pred ccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754 426 NVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 426 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
..+++|++|+++++ .++.++..... +++|++|+++++ .++.+|..+..+++|+.++++++.+.
T Consensus 188 ~~l~~L~~L~Ls~N-~l~~l~~~~~~--l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 188 VVFAKLKTLDLSSN-KLAFMGPEFQS--AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCTTCCEEECCSS-CCCEECGGGGG--GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cccccCCEEECCCC-cCCcchhhhcc--cCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 12556666666664 45555544333 566666666654 45556655555666666666555554
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=3.9e-17 Score=167.95 Aligned_cols=383 Identities=17% Similarity=0.106 Sum_probs=222.0
Q ss_pred cccceeEEeeccCceeeccc--ccCCcCCCceEEecccccccE-----eccccccccccccccccccceeeecccccccc
Q 009754 2 IFLLFYFFNIHTHAHTFAYF--QVGIPSSLVNLNVSRCDKIEE-----IIRHVGEEAKENRIAFSKLKVLILDYLPTLTS 74 (526)
Q Consensus 2 ~~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~-----l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 74 (526)
+.+.++.||++......... .+..+++|++|++++| .+.. ++..+.. +++|++|+++++. +++
T Consensus 1 l~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~--------~~~L~~L~Ls~n~-l~~ 70 (461)
T 1z7x_W 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRV--------NPALAELNLRSNE-LGD 70 (461)
T ss_dssp -CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHT--------CTTCCEEECTTCC-CHH
T ss_pred CCccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHh--------CCCcCEEeCCCCc-CCh
Confidence 35788999998665432222 2677899999999998 4552 3333333 7899999999854 443
Q ss_pred ccccCceecCC----CccEEEecCCCCcc-----ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhh-c
Q 009754 75 FCLENYTLEFP----SLERVSMTHCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEM-I 144 (526)
Q Consensus 75 ~~~~~~~~~~~----~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 144 (526)
.........++ +|++|++++|. ++ .++..+..+++|++|+++++.- .......+...+ .
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i----------~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL----------GDAGLQLLCEGLLD 139 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC----------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcC----------chHHHHHHHHHHhc
Confidence 22221122344 79999999995 44 4566667788999999984210 001122233332 2
Q ss_pred CCCCCcEEEeecCCCCceeccCCCCC--cCCCCCccEEEEecCCCcccCCChHHH----hcCCCCCeeeeccccccch--
Q 009754 145 GFRDMEYLQLSYFPHLKEIWHGQALP--VSFFNNLARLVVDDCTNMSSAIPANLL----RCLNNLQWLEVRNCDSIEE-- 216 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~l----~~l~~L~~L~l~~~~~l~~-- 216 (526)
..++|++|+++++. ++...... ++ ...+++|++|++++|. +++.....+. ...++|++|++++| .++.
T Consensus 140 ~~~~L~~L~L~~n~-l~~~~~~~-l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~ 215 (461)
T 1z7x_W 140 PQCRLEKLQLEYCS-LSAASCEP-LASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDN 215 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHH-HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTH
T ss_pred CCCcceEEECCCCC-CCHHHHHH-HHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHH
Confidence 35689999998875 43211100 00 0236788999988875 4332111111 13568899999888 3443
Q ss_pred ---hccccccccccCCCCCCCCccceEecCCCccccccccC---CCccccCCCcceEeeecCCCCccc-----c-----C
Q 009754 217 ---VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF---TGNIIELPELQHLTIQNCPDMETF-----I-----S 280 (526)
Q Consensus 217 ---~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~-----~-----~ 280 (526)
++. .+..+++|++|+++++. +++.... ......+++|++|++++| +++.. + .
T Consensus 216 ~~~l~~----------~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 216 CRDLCG----------IVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK 283 (461)
T ss_dssp HHHHHH----------HHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC
T ss_pred HHHHHH----------HHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhC
Confidence 222 23457888888888873 3432100 000225788888888886 56652 2 3
Q ss_pred cccceeeecCCCCcccc--chhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCC-hhhhhhcccceeEeccC
Q 009754 281 NSVVHVTTDNKEPQKLT--SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND-ESNKAFANLESLEISEC 357 (526)
Q Consensus 281 ~~L~~L~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~l~~L~~L~l~~c 357 (526)
..++.|+++++.+.... .+.... ....++|+.|++++|. ++......+ .....+++|+.|++++|
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l-----------~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETL-----------LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHH-----------TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCcceEECCCCCCchHHHHHHHHHh-----------ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC
Confidence 57888888887654311 111110 0123699999999874 433211111 11256799999999988
Q ss_pred cCcccc-C----CCCC-CCCCCCEEeeccccCccc-----cccchhhhhccCCceEEEecccCcceeeccCCcccccccc
Q 009754 358 SKLQKL-V----PPSW-HLENLEALEVSKCHGLIN-----LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCN 426 (526)
Q Consensus 358 ~~l~~l-~----~~~~-~l~~L~~L~l~~c~~l~~-----l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 426 (526)
. +++. + ..+. ..++|++|++++| .+++ ++. .+..+++|++|++++++ +++.....-... ...
T Consensus 352 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~--~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~--l~~ 424 (461)
T 1z7x_W 352 R-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAA--TLLANHSLRELDLSNNC-LGDAGILQLVES--VRQ 424 (461)
T ss_dssp B-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH--HHHHCCCCCEEECCSSS-CCHHHHHHHHHH--HTS
T ss_pred c-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHH--HHHhCCCccEEECCCCC-CCHHHHHHHHHH--hcc
Confidence 4 4432 1 1222 2579999999997 4553 222 34568999999999874 443211000000 001
Q ss_pred cccccceeeccccc
Q 009754 427 VFKELRYLELYCLP 440 (526)
Q Consensus 427 ~~~~L~~L~l~~c~ 440 (526)
...+|+.|.+.++.
T Consensus 425 ~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 425 PGCLLEQLVLYDIY 438 (461)
T ss_dssp TTCCCCEEECTTCC
T ss_pred CCcchhheeecccc
Confidence 23468888877654
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=6.8e-15 Score=141.03 Aligned_cols=183 Identities=18% Similarity=0.129 Sum_probs=98.4
Q ss_pred CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (526)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 252 (526)
.+++|++|+++++ .++.+.+. .+..+++|++|++++|..++.++.. .+..+++|+.|+++++. +..++
T Consensus 54 ~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~ 121 (285)
T 1ozn_A 54 ACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPA---------TFHGLGRLHTLHLDRCG-LQELG 121 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTT---------TTTTCTTCCEEECTTSC-CCCCC
T ss_pred cCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHH---------HhcCCcCCCEEECCCCc-CCEEC
Confidence 3455566666555 23333222 2555666666666665434443210 33455666666666543 23321
Q ss_pred cCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (526)
Q Consensus 253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 332 (526)
. ..+..+++|++|+++++ +++..++..+ ..+++|+.|+++++ .+
T Consensus 122 ~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~l~~n-~l 165 (285)
T 1ozn_A 122 P--GLFRGLAALQYLYLQDN-ALQALPDDTF--------------------------------RDLGNLTHLFLHGN-RI 165 (285)
T ss_dssp T--TTTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CC
T ss_pred H--hHhhCCcCCCEEECCCC-cccccCHhHh--------------------------------ccCCCccEEECCCC-cc
Confidence 1 11445666666666663 3443332221 23466777777664 45
Q ss_pred eEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
+.++...+ ..+++|+.|+++++..-...|..+..+++|++|+++++ .++.++.. .+..+++|++|++++++
T Consensus 166 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 166 SSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred cccCHHHh---cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCC
Confidence 55554433 55677777777776433333566667777777777774 45555543 23566777777777654
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.7e-14 Score=141.09 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=133.2
Q ss_pred CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (526)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 254 (526)
+++++|+++++ .++.+ +.+.++++++|++|++++|...+.++.. .+..+++++.+...++..+..++.
T Consensus 30 ~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---------~f~~L~~l~~~l~~~~N~l~~l~~- 97 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEAD---------VFSNLPKLHEIRIEKANNLLYINP- 97 (350)
T ss_dssp TTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTT---------SBCSCTTCCEEEEEEETTCCEECT-
T ss_pred CCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccChh---------HhhcchhhhhhhcccCCcccccCc-
Confidence 56677777666 35554 3333666777777777776544444320 234456666555555555665532
Q ss_pred CCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE
Q 009754 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH 334 (526)
Q Consensus 255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 334 (526)
+.+..+++|++|+++++ +++..++... ....++..+++.++..+..
T Consensus 98 -~~f~~l~~L~~L~l~~n-~l~~~~~~~~--------------------------------~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 98 -EAFQNLPNLQYLLISNT-GIKHLPDVHK--------------------------------IHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp -TSBCCCTTCCEEEEEEE-CCSSCCCCTT--------------------------------CCBSSCEEEEEESCTTCCE
T ss_pred -hhhhhcccccccccccc-ccccCCchhh--------------------------------cccchhhhhhhcccccccc
Confidence 12556777777777763 4444432111 0124556666666666666
Q ss_pred ecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceee
Q 009754 335 LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQII 414 (526)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~ 414 (526)
++...+. .....++.|+++++ .++.++.......+|+++++.+++.++.++... +..+++|++|+++++ +++.++
T Consensus 144 l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 144 IERNSFV--GLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp ECTTSST--TSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCCCCC
T ss_pred ccccchh--hcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC-CcCccC
Confidence 6654432 22345667777664 466666666666677777777767777776643 356777777777765 466555
Q ss_pred ccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcC
Q 009754 415 QLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQ 464 (526)
Q Consensus 415 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 464 (526)
. ..|.+|+.|.+.++.+++.+|. .. .+++|+.+++.+
T Consensus 219 ~----------~~~~~L~~L~~l~~~~l~~lP~-l~--~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 S----------YGLENLKKLRARSTYNLKKLPT-LE--KLVALMEASLTY 255 (350)
T ss_dssp S----------SSCTTCCEEECTTCTTCCCCCC-TT--TCCSCCEEECSC
T ss_pred h----------hhhccchHhhhccCCCcCcCCC-ch--hCcChhhCcCCC
Confidence 4 2466777777777777777764 22 267777777753
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=2.4e-14 Score=133.47 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=40.2
Q ss_pred CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCC
Q 009754 176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT 255 (526)
Q Consensus 176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 255 (526)
+|++|+++++ .++.+++ ..+..+++|++|++++|..++.++.. .+..+++|+.|++++|..++.++.
T Consensus 32 ~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~---------~f~~l~~L~~L~l~~~n~l~~i~~-- 98 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESH---------SFYNLSKVTHIEIRNTRNLTYIDP-- 98 (239)
T ss_dssp TCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTT---------TEESCTTCCEEEEEEETTCCEECT--
T ss_pred cccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHh---------HcCCCcCCcEEECCCCCCeeEcCH--
Confidence 5556666555 2343322 22555666666666655434444320 223455556666555444444421
Q ss_pred CccccCCCcceEeeec
Q 009754 256 GNIIELPELQHLTIQN 271 (526)
Q Consensus 256 ~~~~~~~~L~~L~l~~ 271 (526)
..+..+++|++|++++
T Consensus 99 ~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 99 DALKELPLLKFLGIFN 114 (239)
T ss_dssp TSEECCTTCCEEEEEE
T ss_pred HHhCCCCCCCEEeCCC
Confidence 1144555555555555
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=4.1e-14 Score=135.56 Aligned_cols=184 Identities=20% Similarity=0.181 Sum_probs=120.1
Q ss_pred hcCCCCCcEEEeecCCCCcee-ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccc
Q 009754 143 MIGFRDMEYLQLSYFPHLKEI-WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE 221 (526)
Q Consensus 143 ~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 221 (526)
+..+++|++|+++++. ++.+ +... ..+++|++|++++|..++.+.+. .+..+++|++|++++|. +..++..
T Consensus 52 ~~~~~~L~~L~l~~n~-l~~~~~~~~----~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~- 123 (285)
T 1ozn_A 52 FRACRNLTILWLHSNV-LARIDAAAF----TGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCG-LQELGPG- 123 (285)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTT----TTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCTT-
T ss_pred cccCCCCCEEECCCCc-cceeCHhhc----CCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECCCCc-CCEECHh-
Confidence 4456777777777664 4433 2222 45678888888887545555332 36778888888888873 4443210
Q ss_pred ccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhh
Q 009754 222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN 301 (526)
Q Consensus 222 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~ 301 (526)
.+..+++|+.|+++++ .++.++. ..+..+++|++|+++++ +++..++..+
T Consensus 124 --------~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~------------------ 173 (285)
T 1ozn_A 124 --------LFRGLAALQYLYLQDN-ALQALPD--DTFRDLGNLTHLFLHGN-RISSVPERAF------------------ 173 (285)
T ss_dssp --------TTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS-CCCEECTTTT------------------
T ss_pred --------HhhCCcCCCEEECCCC-cccccCH--hHhccCCCccEEECCCC-cccccCHHHh------------------
Confidence 4556788888888876 3444432 12557888888888884 5655543322
Q ss_pred hhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeecc
Q 009754 302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSK 380 (526)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 380 (526)
..+++|+.|+++++ .++.+....+ ..+++|+.|+++++ .++.++. .+..+++|++|++++
T Consensus 174 --------------~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 174 --------------RGLHSLDRLLLHQN-RVAHVHPHAF---RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp --------------TTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred --------------cCccccCEEECCCC-cccccCHhHc---cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence 24578889998885 4555544333 67889999999887 4555653 467789999999998
Q ss_pred ccC
Q 009754 381 CHG 383 (526)
Q Consensus 381 c~~ 383 (526)
++-
T Consensus 235 N~~ 237 (285)
T 1ozn_A 235 NPW 237 (285)
T ss_dssp SCE
T ss_pred CCc
Confidence 653
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=8.1e-15 Score=151.31 Aligned_cols=237 Identities=15% Similarity=0.110 Sum_probs=137.5
Q ss_pred CCCCCcEEEeecCCCCceec-cCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccccc
Q 009754 145 GFRDMEYLQLSYFPHLKEIW-HGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ 223 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 223 (526)
.+++|+.|+++++. ++.+. ... ..+++|++|++++|. ++..++ +..+++|++|++++| .++.++.
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~---- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADL----APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELLV---- 97 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGG----TTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEEEE----
T ss_pred cCCCccEEEeeCCc-CCCCCHHHH----hCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCCCC----
Confidence 34478888887765 33221 112 356777777777764 433333 667777777777777 4544432
Q ss_pred ccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhh
Q 009754 224 NADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL 303 (526)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 303 (526)
.++|+.|+++++ .+..++. ..+++|+.|++++| .++..++..+
T Consensus 98 ----------~~~L~~L~L~~N-~l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~-------------------- 140 (487)
T 3oja_A 98 ----------GPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE-------------------- 140 (487)
T ss_dssp ----------CTTCCEEECCSS-CCCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCG--------------------
T ss_pred ----------CCCcCEEECcCC-cCCCCCc-----cccCCCCEEECCCC-CCCCCCchhh--------------------
Confidence 367777777775 3444422 24567777777774 4544433222
Q ss_pred hccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccccC
Q 009754 304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHG 383 (526)
Q Consensus 304 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 383 (526)
+.+++|+.|+++++ .++.+....+. ..+++|+.|++++|. ++.++.. ..+++|++|+++++ .
T Consensus 141 ------------~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~~-~~l~~L~~L~Ls~N-~ 202 (487)
T 3oja_A 141 ------------GCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-K 202 (487)
T ss_dssp ------------GGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-C
T ss_pred ------------cCCCCCCEEECCCC-CCCCcChHHHh--hhCCcccEEecCCCc-ccccccc-ccCCCCCEEECCCC-C
Confidence 23478888888775 34443333221 356788888888764 5555433 34777888888874 5
Q ss_pred ccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeeccccccc-ceecCCCccCCCCCccEEEE
Q 009754 384 LINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSL-TSFCLGNYALEFPSLKQVVV 462 (526)
Q Consensus 384 l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~l 462 (526)
++.+++. +..+++|+.|+++++ .++.++. ....+++|+.|++.+++-. ..++..... ++.|+.+++
T Consensus 203 l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~--l~~L~~l~~ 269 (487)
T 3oja_A 203 LAFMGPE--FQSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAK 269 (487)
T ss_dssp CCEECGG--GGGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCBCHHHHHHHHTT--CHHHHHHHH
T ss_pred CCCCCHh--HcCCCCccEEEecCC-cCcccch--------hhccCCCCCEEEcCCCCCcCcchHHHHHh--CCCCcEEec
Confidence 6666553 456777888888775 4555443 1134577777777776433 123322222 555665555
Q ss_pred c
Q 009754 463 R 463 (526)
Q Consensus 463 ~ 463 (526)
.
T Consensus 270 ~ 270 (487)
T 3oja_A 270 Q 270 (487)
T ss_dssp H
T ss_pred c
Confidence 3
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=2.9e-14 Score=147.13 Aligned_cols=236 Identities=11% Similarity=0.033 Sum_probs=127.4
Q ss_pred CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (526)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 252 (526)
.+++|++|++++| .++.+++ ..+..+++|++|++++|. +...+ .+..+++|+.|+++++ .++.++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-----------~l~~l~~L~~L~Ls~N-~l~~l~ 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETL-----------DLESLSTLRTLDLNNN-YVQELL 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSC-CEEEE-----------ECTTCTTCCEEECCSS-EEEEEE
T ss_pred cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCC-CCCCc-----------ccccCCCCCEEEecCC-cCCCCC
Confidence 3568888888887 4555533 337788888888888873 44332 2345778888888876 344432
Q ss_pred cCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (526)
Q Consensus 253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 332 (526)
..++|++|++++| .+...++. .+++|+.|+++++ .+
T Consensus 97 -------~~~~L~~L~L~~N-~l~~~~~~-----------------------------------~l~~L~~L~L~~N-~l 132 (487)
T 3oja_A 97 -------VGPSIETLHAANN-NISRVSCS-----------------------------------RGQGKKNIYLANN-KI 132 (487)
T ss_dssp -------ECTTCCEEECCSS-CCCCEEEC-----------------------------------CCSSCEEEECCSS-CC
T ss_pred -------CCCCcCEEECcCC-cCCCCCcc-----------------------------------ccCCCCEEECCCC-CC
Confidence 2367777777774 34433211 2366777777664 34
Q ss_pred eEecccCChhhhhhcccceeEeccCcCccccCCCCC-CCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcc
Q 009754 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSW-HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIE 411 (526)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 411 (526)
+.++...+ +.+++|+.|+++++..-...|..+. .+++|++|+++++ .++.++.. ..+++|++|+++++ .++
T Consensus 133 ~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~Ls~N-~l~ 204 (487)
T 3oja_A 133 TMLRDLDE---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ---VVFAKLKTLDLSSN-KLA 204 (487)
T ss_dssp CSGGGBCG---GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC---CCCTTCCEEECCSS-CCC
T ss_pred CCCCchhh---cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc---ccCCCCCEEECCCC-CCC
Confidence 43332222 5566666666666532222333333 4566666666664 34444331 23566666666654 344
Q ss_pred eeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCc-eeccCCCCCCCCcceEEe
Q 009754 412 QIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKM-KIFSQGVLDTPMLNKVNV 486 (526)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l-~~lp~~~~~~~~L~~l~l 486 (526)
.++. ....+++|+.|+++++ .++.+|..... +++|++|++.+++-. ..+|..+..++.++.+.+
T Consensus 205 ~~~~--------~~~~l~~L~~L~Ls~N-~l~~lp~~l~~--l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 205 FMGP--------EFQSAAGVTWISLRNN-KLVLIEKALRF--SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp EECG--------GGGGGTTCSEEECTTS-CCCEECTTCCC--CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCH--------hHcCCCCccEEEecCC-cCcccchhhcc--CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 4432 0123455666666554 44555554333 556666666554333 233333334444444444
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=7.6e-15 Score=144.20 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=97.5
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccc--cccC
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT--FSHG 104 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~ 104 (526)
..++.++++++ .+. +..+.... .++++.|++.+.. ++..... ...+++|++|++++|. ++. ++..
T Consensus 47 ~~~~~l~l~~~-~~~--~~~~~~~~------~~~l~~L~l~~n~-l~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH--PDVTGRLL------SQGVIAFRCPRSF-MDQPLAE--HFSPFRVQHMDLSNSV-IEVSTLHGI 113 (336)
T ss_dssp TTSSEEECTTC-BCC--HHHHHHHH------HTTCSEEECTTCE-ECSCCCS--CCCCBCCCEEECTTCE-ECHHHHHHH
T ss_pred hhheeeccccc-cCC--HHHHHhhh------hccceEEEcCCcc-ccccchh--hccCCCCCEEEccCCC-cCHHHHHHH
Confidence 34677777764 333 22222200 1566777766532 3332222 2346777777777664 331 4444
Q ss_pred cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce--eccCCCCCcCCCCCccEEEE
Q 009754 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE--IWHGQALPVSFFNNLARLVV 182 (526)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~l 182 (526)
+..+++|++|+++++ ......+..+..+++|++|+++++..+++ +.... ..+++|++|++
T Consensus 114 ~~~~~~L~~L~L~~~--------------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----~~~~~L~~L~l 175 (336)
T 2ast_B 114 LSQCSKLQNLSLEGL--------------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDELNL 175 (336)
T ss_dssp HTTBCCCSEEECTTC--------------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----HHCTTCCEEEC
T ss_pred HhhCCCCCEEeCcCc--------------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----hcCCCCCEEcC
Confidence 445666666666631 11123344445566666666666643442 11111 23556666666
Q ss_pred ecCCCcccCCChHHHhcCC-CCCeeeecccc-ccc--hhccccccccccCCCCCCCCccceEecCCCccccccccCCCcc
Q 009754 183 DDCTNMSSAIPANLLRCLN-NLQWLEVRNCD-SIE--EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI 258 (526)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 258 (526)
++|..+++......+..++ +|++|++++|. .++ .++. ....+++|+.|++++|..+++... . .+
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~----------~~~~~~~L~~L~l~~~~~l~~~~~-~-~l 243 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----------LVRRCPNLVHLDLSDSVMLKNDCF-Q-EF 243 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----------HHHHCTTCSEEECTTCTTCCGGGG-G-GG
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----------HHhhCCCCCEEeCCCCCcCCHHHH-H-HH
Confidence 6654343211122255566 66666666653 222 1222 122355666666666543332110 0 14
Q ss_pred ccCCCcceEeeecCC
Q 009754 259 IELPELQHLTIQNCP 273 (526)
Q Consensus 259 ~~~~~L~~L~l~~c~ 273 (526)
..+++|++|++++|.
T Consensus 244 ~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 244 FQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGCTTCCEEECTTCT
T ss_pred hCCCCCCEeeCCCCC
Confidence 455666666666654
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=7.4e-14 Score=130.08 Aligned_cols=209 Identities=10% Similarity=0.079 Sum_probs=152.3
Q ss_pred eecccccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCC
Q 009754 17 TFAYFQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHC 95 (526)
Q Consensus 17 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 95 (526)
...+|. ..++|++|+++++ .+..+|. .+.+ +++|++|++.++..++.++... ...+++|++|++++|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~--------l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSN--------LPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNT 90 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTT--------CTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEE
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHHHccC--------CCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCC
Confidence 444555 3458999999996 7899877 4555 8999999999876677776654 457999999999986
Q ss_pred CCccccccC-cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCc---EEEeecCCCCceeccCCCCCc
Q 009754 96 PNMKTFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDME---YLQLSYFPHLKEIWHGQALPV 171 (526)
Q Consensus 96 ~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~ 171 (526)
..++.++.. +..+++|++|++++ +.+..++. +..+++|+ .|++++++.++.+.... +
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~---------------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~-- 151 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFN---------------TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-F-- 151 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEE---------------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-T--
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCC---------------CCCccccc-cccccccccccEEECCCCcchhhcCccc-c--
Confidence 578877754 45689999999983 23333444 55677777 99999985577654332 1
Q ss_pred CCCCCcc-EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCC-CccceEecCCCcccc
Q 009754 172 SFFNNLA-RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLF-PKLYGLRLIDLPKLK 249 (526)
Q Consensus 172 ~~l~~L~-~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~ 249 (526)
..+++|+ +|+++++ .++.++ ...+.. ++|++|++++|..++.++.. ....+ ++|+.|+++++ .++
T Consensus 152 ~~l~~L~~~L~l~~n-~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~---------~~~~l~~~L~~L~l~~N-~l~ 218 (239)
T 2xwt_C 152 QGLCNETLTLKLYNN-GFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKD---------AFGGVYSGPSLLDVSQT-SVT 218 (239)
T ss_dssp TTTBSSEEEEECCSC-CCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTT---------TTTTCSBCCSEEECTTC-CCC
T ss_pred cchhcceeEEEcCCC-CCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHH---------HhhccccCCcEEECCCC-ccc
Confidence 4578999 9999988 455553 333444 89999999999657766431 44567 89999999985 566
Q ss_pred ccccCCCccccCCCcceEeeecCCC
Q 009754 250 RFCNFTGNIIELPELQHLTIQNCPD 274 (526)
Q Consensus 250 ~~~~~~~~~~~~~~L~~L~l~~c~~ 274 (526)
.++.. .+++|+.|++.++..
T Consensus 219 ~l~~~-----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 219 ALPSK-----GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCT-----TCTTCSEEECTTC--
T ss_pred cCChh-----HhccCceeeccCccC
Confidence 66432 789999999998754
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=3.3e-13 Score=133.26 Aligned_cols=213 Identities=21% Similarity=0.211 Sum_probs=118.0
Q ss_pred hhHHhhh-hhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754 135 TIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS 213 (526)
Q Consensus 135 ~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (526)
.+..++. .+..+++|++|+|+++.-.+.+.... + ..+++++++...++.+++.+++ +.+..+++|++|++++| .
T Consensus 41 ~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f--~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n-~ 115 (350)
T 4ay9_X 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-F--SNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNT-G 115 (350)
T ss_dssp CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-B--CSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEE-C
T ss_pred cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-h--hcchhhhhhhcccCCcccccCc-hhhhhcccccccccccc-c
Confidence 3344442 34456666666666665333222211 0 2345555554444445555533 33566777777777666 4
Q ss_pred cchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccC-CCcceEeeecCCCCccccCcccceeeecCCC
Q 009754 214 IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIEL-PELQHLTIQNCPDMETFISNSVVHVTTDNKE 292 (526)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~ 292 (526)
+..++.. ......++..|.+.++..+..++... +..+ ..++.|++++ ++++.+++..
T Consensus 116 l~~~~~~---------~~~~~~~l~~l~l~~~~~i~~l~~~~--f~~~~~~l~~L~L~~-N~i~~i~~~~---------- 173 (350)
T 4ay9_X 116 IKHLPDV---------HKIHSLQKVLLDIQDNINIHTIERNS--FVGLSFESVILWLNK-NGIQEIHNSA---------- 173 (350)
T ss_dssp CSSCCCC---------TTCCBSSCEEEEEESCTTCCEECTTS--STTSBSSCEEEECCS-SCCCEECTTS----------
T ss_pred cccCCch---------hhcccchhhhhhhccccccccccccc--hhhcchhhhhhcccc-ccccCCChhh----------
Confidence 4444321 12223445556665555555543221 2222 3456666665 3444433221
Q ss_pred CccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCC
Q 009754 293 PQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLEN 372 (526)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~ 372 (526)
...++|+++.+.++..++.++...+ ..+++|+.|+++++ .++.+|... +.+
T Consensus 174 -----------------------f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~~--~~~ 224 (350)
T 4ay9_X 174 -----------------------FNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSYG--LEN 224 (350)
T ss_dssp -----------------------STTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSSS--CTT
T ss_pred -----------------------ccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChhh--hcc
Confidence 1225677777777667777776554 66778888888775 467776532 567
Q ss_pred CCEEeeccccCccccccchhhhhccCCceEEEec
Q 009754 373 LEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD 406 (526)
Q Consensus 373 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 406 (526)
|++|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 77777777777777775 35677777777754
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=9.9e-15 Score=143.39 Aligned_cols=227 Identities=11% Similarity=0.085 Sum_probs=152.3
Q ss_pred eeEEeeccCceeecccccCCc--CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceec
Q 009754 6 FYFFNIHTHAHTFAYFQVGIP--SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE 83 (526)
Q Consensus 6 l~~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (526)
++.++++..... ...+..+ ++++.|+++++ .+...+..+.+ +++|++|+++++. +++.........
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~--------~~~L~~L~L~~~~-l~~~~~~~~~~~ 116 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFS--------PFRVQHMDLSNSV-IEVSTLHGILSQ 116 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCC--------CBCCCEEECTTCE-ECHHHHHHHHTT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchhhcc--------CCCCCEEEccCCC-cCHHHHHHHHhh
Confidence 445555543322 2334445 89999999996 56666555444 8899999999875 443211222456
Q ss_pred CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCcee
Q 009754 84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI 163 (526)
Q Consensus 84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 163 (526)
+++|++|++++|..-...+..+..+++|++|+++++.. -....++..+..+++|++|+++++..+++.
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~------------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG------------FSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS------------CCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC------------CCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 89999999999963335556667789999999995311 011134555667899999999999656642
Q ss_pred --ccCCCCCcCCCC-CccEEEEecCC-CcccCCChHHHhcCCCCCeeeeccccccch-hccccccccccCCCCCCCCccc
Q 009754 164 --WHGQALPVSFFN-NLARLVVDDCT-NMSSAIPANLLRCLNNLQWLEVRNCDSIEE-VLHLEEQNADKEHRGPLFPKLY 238 (526)
Q Consensus 164 --~~~~~~~~~~l~-~L~~L~l~~c~-~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~~l~~L~ 238 (526)
.... ..++ +|++|++++|. .+++......+..+++|++|++++|..++. .+. .+..+++|+
T Consensus 185 ~~~~~~----~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~----------~l~~l~~L~ 250 (336)
T 2ast_B 185 HVQVAV----AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----------EFFQLNYLQ 250 (336)
T ss_dssp HHHHHH----HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----------GGGGCTTCC
T ss_pred HHHHHH----HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH----------HHhCCCCCC
Confidence 2212 4578 99999999985 343211123477899999999999975543 222 345679999
Q ss_pred eEecCCCccccccccCCCccccCCCcceEeeecC
Q 009754 239 GLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC 272 (526)
Q Consensus 239 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 272 (526)
.|++++|..+.+. ....+..+++|+.|++++|
T Consensus 251 ~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIPE--TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGG--GGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCHH--HHHHHhcCCCCCEEeccCc
Confidence 9999998744432 1112668999999999997
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=3.3e-15 Score=145.17 Aligned_cols=258 Identities=16% Similarity=0.077 Sum_probs=141.3
Q ss_pred ccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee-------cCCCccEEEecC
Q 009754 22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL-------EFPSLERVSMTH 94 (526)
Q Consensus 22 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-------~~~~L~~L~l~~ 94 (526)
.++..++|+.|+++++ .+ .+|..+.. .|++|+++++. ++......... .+++|++|++++
T Consensus 38 ~~~~~~~L~~l~l~~n-~l-~~p~~~~~----------~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 104 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVD-TE-ADLGQFTD----------IIKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLEN 104 (312)
T ss_dssp EEEEEEECTTHHHHCC-TT-CCCHHHHH----------HHHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EEccCCCceeEeeccc-cc-ccHHHHHH----------HHhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccC
Confidence 3456677888888885 45 66665433 36666666532 22211111111 377788888887
Q ss_pred CCCccccccCc--ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCC-CCCc
Q 009754 95 CPNMKTFSHGI--LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ-ALPV 171 (526)
Q Consensus 95 c~~l~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~ 171 (526)
|..-...|..+ ..+++|++|+++ ++. ++..+... .++.
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls--------------------------------------~N~-l~~~~~~~~~l~~ 145 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLR--------------------------------------NVS-WATRDAWLAELQQ 145 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEE--------------------------------------SCB-CSSSSSHHHHHHT
T ss_pred CcccchhHHHHHHhcCCCccEEEcc--------------------------------------CCC-CcchhHHHHHHHH
Confidence 75333455443 445555555555 332 11110000 0000
Q ss_pred CCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (526)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 251 (526)
..+++|++|++++|. ++.+++. .++.+++|++|++++|.....++.... .....+++|+.|+++++ .++.+
T Consensus 146 ~~~~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~------~~~~~l~~L~~L~L~~N-~l~~~ 216 (312)
T 1wwl_A 146 WLKPGLKVLSIAQAH-SLNFSCE-QVRVFPALSTLDLSDNPELGERGLISA------LCPLKFPTLQVLALRNA-GMETP 216 (312)
T ss_dssp TCCTTCCEEEEESCS-CCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHH------SCTTSCTTCCEEECTTS-CCCCH
T ss_pred hhcCCCcEEEeeCCC-CccchHH-HhccCCCCCEEECCCCCcCcchHHHHH------HHhccCCCCCEEECCCC-cCcch
Confidence 112667777776663 3444322 266777777777777753333211000 02256777888888776 34422
Q ss_pred ccCC-CccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCC
Q 009754 252 CNFT-GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH 330 (526)
Q Consensus 252 ~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 330 (526)
+... ..+..+++|++|+++++ ++++.++.. ....+++|+.|+++++
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------------------------------~~~~l~~L~~L~Ls~N- 263 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHN-SLRDAAGAP-------------------------------SCDWPSQLNSLNLSFT- 263 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTS-CCCSSCCCS-------------------------------CCCCCTTCCEEECTTS-
T ss_pred HHHHHHHHhcCCCCCEEECCCC-cCCcccchh-------------------------------hhhhcCCCCEEECCCC-
Confidence 2110 11235678888888874 455433110 0123478888888875
Q ss_pred CceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeeccc
Q 009754 331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC 381 (526)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 381 (526)
.++.++... . ++|+.|+++++ .++.+|. +..+++|++|++++.
T Consensus 264 ~l~~ip~~~----~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 264 GLKQVPKGL----P--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSSCCSSC----C--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred ccChhhhhc----c--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 455665433 2 78888888886 4677765 778888888988884
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=8.5e-14 Score=134.86 Aligned_cols=199 Identities=17% Similarity=0.230 Sum_probs=141.1
Q ss_pred ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (526)
Q Consensus 20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 99 (526)
..+...+++|++|++++| .+..++ .+.. +++|++|+++++ .++++.. ...+++|++|++++|. ++
T Consensus 34 ~~~~~~l~~L~~L~l~~~-~i~~l~-~~~~--------l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~ 98 (308)
T 1h6u_A 34 TVTQADLDGITTLSAFGT-GVTTIE-GVQY--------LNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LK 98 (308)
T ss_dssp EECHHHHHTCCEEECTTS-CCCCCT-TGGG--------CTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CS
T ss_pred eecHHHcCCcCEEEeeCC-CccCch-hhhc--------cCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CC
Confidence 345566888999999886 677776 3444 788889988875 4555444 3468889999999885 66
Q ss_pred ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (526)
Q Consensus 100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 179 (526)
.++ .+..+++|++|+++++ .+..++ .+..+++|+.|+++++. ++.+.. ...+++|++
T Consensus 99 ~~~-~~~~l~~L~~L~l~~n---------------~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~ 155 (308)
T 1h6u_A 99 NVS-AIAGLQSIKTLDLTST---------------QITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-----LAGLTNLQY 155 (308)
T ss_dssp CCG-GGTTCTTCCEEECTTS---------------CCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCE
T ss_pred Cch-hhcCCCCCCEEECCCC---------------CCCCch-hhcCCCCCCEEECCCCc-cCcCcc-----ccCCCCccE
Confidence 654 5667888889888832 223333 26678899999998876 433221 145789999
Q ss_pred EEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccc
Q 009754 180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNII 259 (526)
Q Consensus 180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 259 (526)
|++++| .++.+++ +..+++|++|++++| .++.++. +..+++|+.|+++++ .+.+++. +.
T Consensus 156 L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~-----------l~~l~~L~~L~L~~N-~l~~~~~----l~ 214 (308)
T 1h6u_A 156 LSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDISP-----------LASLPNLIEVHLKNN-QISDVSP----LA 214 (308)
T ss_dssp EECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-----------GGGCTTCCEEECTTS-CCCBCGG----GT
T ss_pred EEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcChh-----------hcCCCCCCEEEccCC-ccCcccc----cc
Confidence 999988 4555533 788999999999988 5555543 346889999999986 4555542 66
Q ss_pred cCCCcceEeeecCCCCccc
Q 009754 260 ELPELQHLTIQNCPDMETF 278 (526)
Q Consensus 260 ~~~~L~~L~l~~c~~l~~~ 278 (526)
.+++|+.|+++++ .++..
T Consensus 215 ~l~~L~~L~l~~N-~i~~~ 232 (308)
T 1h6u_A 215 NTSNLFIVTLTNQ-TITNQ 232 (308)
T ss_dssp TCTTCCEEEEEEE-EEECC
T ss_pred CCCCCCEEEccCC-eeecC
Confidence 8899999999985 44443
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=1.4e-13 Score=133.27 Aligned_cols=192 Identities=17% Similarity=0.240 Sum_probs=147.6
Q ss_pred ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754 3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (526)
|++|+.|+++++... .++.+..+++|++|++++| .+..++. +.. +++|++|+++++. +++... ..
T Consensus 40 l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n-~i~~~~~-~~~--------l~~L~~L~L~~n~-l~~~~~---~~ 104 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN-QITDLAP-LKN--------LTKITELELSGNP-LKNVSA---IA 104 (308)
T ss_dssp HHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CCSCCEEECCSCC-CSCCGG---GT
T ss_pred cCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCC-cCCCChh-Hcc--------CCCCCEEEccCCc-CCCchh---hc
Confidence 678999999987544 4678999999999999997 7888876 655 8999999999865 655532 45
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|+.|++++|. ++.++. +..+++|++|+++++ .+..++. +..+++|+.|+++++. ++.
T Consensus 105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n---------------~l~~~~~-l~~l~~L~~L~l~~n~-l~~ 165 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN---------------QITNISP-LAGLTNLQYLSIGNAQ-VSD 165 (308)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS---------------CCCCCGG-GGGCTTCCEEECCSSC-CCC
T ss_pred CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC---------------ccCcCcc-ccCCCCccEEEccCCc-CCC
Confidence 69999999999994 666654 677999999999842 2233332 6678999999999986 443
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
+.. . ..+++|++|++++| .++.+++ +..+++|++|++++| .+..++. +..+++|+.|++
T Consensus 166 ~~~-l----~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~~-----------l~~l~~L~~L~l 224 (308)
T 1h6u_A 166 LTP-L----ANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVSP-----------LANTSNLFIVTL 224 (308)
T ss_dssp CGG-G----TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCGG-----------GTTCTTCCEEEE
T ss_pred Chh-h----cCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCcccc-----------ccCCCCCCEEEc
Confidence 322 2 56899999999998 4566544 789999999999998 5555542 356899999999
Q ss_pred CCCccccc
Q 009754 243 IDLPKLKR 250 (526)
Q Consensus 243 ~~~~~l~~ 250 (526)
++++ ++.
T Consensus 225 ~~N~-i~~ 231 (308)
T 1h6u_A 225 TNQT-ITN 231 (308)
T ss_dssp EEEE-EEC
T ss_pred cCCe-eec
Confidence 9864 343
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=1.9e-14 Score=139.85 Aligned_cols=204 Identities=21% Similarity=0.185 Sum_probs=120.3
Q ss_pred CCCCCcEEEeecCCCCc-eeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcC-----CCCCeeeeccccccchhc
Q 009754 145 GFRDMEYLQLSYFPHLK-EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL-----NNLQWLEVRNCDSIEEVL 218 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~~~ 218 (526)
.+++|++|+++++. ++ ..+... + ...+++|++|+++++. ++.. |.. +..+ ++|++|++++| .+..++
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~-~-~~~l~~L~~L~Ls~N~-l~~~-~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPL-L-EATGPDLNILNLRNVS-WATR-DAW-LAELQQWLKPGLKVLSIAQA-HSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCS-S-SCCSCCCSEEEEESCB-CSSS-SSH-HHHHHTTCCTTCCEEEEESC-SCCCCC
T ss_pred CcCCccEEEccCCc-ccchhHHHH-H-HhcCCCccEEEccCCC-Ccch-hHH-HHHHHHhhcCCCcEEEeeCC-CCccch
Confidence 67899999999876 32 222111 1 1457889999999884 5555 322 5555 88999999888 444443
Q ss_pred -cccccccccCCCCCCCCccceEecCCCcccccc--ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCcc
Q 009754 219 -HLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF--CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK 295 (526)
Q Consensus 219 -~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~ 295 (526)
. .++.+++|+.|+++++...... +.... +..+++|++|++++| +++..+..
T Consensus 166 ~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~-------------- 219 (312)
T 1wwl_A 166 CE----------QVRVFPALSTLDLSDNPELGERGLISALC-PLKFPTLQVLALRNA-GMETPSGV-------------- 219 (312)
T ss_dssp TT----------TCCCCSSCCEEECCSCTTCHHHHHHHHSC-TTSCTTCCEEECTTS-CCCCHHHH--------------
T ss_pred HH----------HhccCCCCCEEECCCCCcCcchHHHHHHH-hccCCCCCEEECCCC-cCcchHHH--------------
Confidence 2 4567888888888887533321 11111 257788888888875 44422100
Q ss_pred ccchhhhhhccccccccccCCCCCCccEEEecCCCCceEec-ccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCC
Q 009754 296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW-KENDESNKAFANLESLEISECSKLQKLVPPSWHLENLE 374 (526)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 374 (526)
...+ ...+++|+.|+++++. ++... ...+ ..+++|+.|++++|. ++.+|..+. ++|+
T Consensus 220 ---~~~~------------~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 220 ---CSAL------------AAARVQLQGLDLSHNS-LRDAAGAPSC---DWPSQLNSLNLSFTG-LKQVPKGLP--AKLS 277 (312)
T ss_dssp ---HHHH------------HHTTCCCSEEECTTSC-CCSSCCCSCC---CCCTTCCEEECTTSC-CSSCCSSCC--SEEE
T ss_pred ---HHHH------------HhcCCCCCEEECCCCc-CCcccchhhh---hhcCCCCEEECCCCc-cChhhhhcc--CCce
Confidence 0000 0134677777777743 43322 1211 445677777777763 556666555 6777
Q ss_pred EEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 375 ALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 375 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
+|+++++ .++.+|. ...+++|++|+++++
T Consensus 278 ~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 278 VLDLSYN-RLDRNPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECCSS-CCCSCCC---TTTSCEEEEEECTTC
T ss_pred EEECCCC-CCCCChh---HhhCCCCCEEeccCC
Confidence 7777774 5555543 355666777766654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=1.5e-12 Score=124.77 Aligned_cols=198 Identities=16% Similarity=0.088 Sum_probs=130.4
Q ss_pred CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (526)
.+++++++++++.. ++.++. ...+++++|+++++. ++.+ +...+..+++|++|++++| .++.++.
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~------~~~~~l~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~----- 72 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPP------DLPKDTTILHLSENL-LYTF-SLATLMPYTRLTQLNLDRA-ELTKLQV----- 72 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCS------CCCTTCCEEECTTSC-CSEE-EGGGGTTCTTCCEEECTTS-CCCEEEC-----
T ss_pred ccCCccEEECCCCC-CCcCCC------CCCCCCCEEEcCCCc-CCcc-CHHHhhcCCCCCEEECCCC-ccCcccC-----
Confidence 56777777777654 443332 224678888888874 4444 2333778888888888887 4555542
Q ss_pred cccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhh
Q 009754 225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL 304 (526)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~ 304 (526)
.+.+++|+.|+++++ .++.++.. +..+++|++|+++++ +++.+++..+
T Consensus 73 ------~~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N-~l~~l~~~~~--------------------- 120 (290)
T 1p9a_G 73 ------DGTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFN-RLTSLPLGAL--------------------- 120 (290)
T ss_dssp ------CSCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSS-CCCCCCSSTT---------------------
T ss_pred ------CCCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCC-cCcccCHHHH---------------------
Confidence 246788888888875 45655543 557888888888884 5665544332
Q ss_pred ccccccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccC
Q 009754 305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHG 383 (526)
Q Consensus 305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~ 383 (526)
..+++|+.|+++++ .++.++...+ ..+++|+.|+++++ .++.+|.. +..+++|++|+++++ .
T Consensus 121 -----------~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~ 183 (290)
T 1p9a_G 121 -----------RGLGELQELYLKGN-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-S 183 (290)
T ss_dssp -----------TTCTTCCEEECTTS-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred -----------cCCCCCCEEECCCC-CCCccChhhc---ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-c
Confidence 23478888888774 4566655443 56778888888776 46666654 356788888888874 5
Q ss_pred ccccccchhhhhccCCceEEEeccc
Q 009754 384 LINLLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 384 l~~l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
++.+|.. +...++|+.+++.+++
T Consensus 184 l~~ip~~--~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 LYTIPKG--FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCTT--TTTTCCCSEEECCSCC
T ss_pred CCccChh--hcccccCCeEEeCCCC
Confidence 6666653 3455678888877654
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=2.6e-12 Score=121.97 Aligned_cols=199 Identities=18% Similarity=0.163 Sum_probs=117.9
Q ss_pred CCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcccccccccc
Q 009754 148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADK 227 (526)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 227 (526)
+.+.+++++.. ++.++.. ..+++++|+++++. ++.+++ ..+..+++|++|++++| .++.++..
T Consensus 17 ~~~~l~~~~~~-l~~ip~~------~~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~i~~~------- 79 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSN------IPADTKKLDLQSNK-LSSLPS-KAFHRLTKLRLLYLNDN-KLQTLPAG------- 79 (270)
T ss_dssp TTTEEECTTSC-CSSCCSC------CCTTCSEEECCSSC-CSCCCT-TSSSSCTTCCEEECCSS-CCSCCCTT-------
T ss_pred CCCEEEccCCC-CCccCCC------CCCCCCEEECcCCC-CCeeCH-HHhcCCCCCCEEECCCC-ccCeeChh-------
Confidence 35566665543 3332222 23567777777763 444432 23667777888888776 44444320
Q ss_pred CCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccc
Q 009754 228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ 307 (526)
Q Consensus 228 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 307 (526)
.+..+++|+.|+++++ .+..++. ..+..+++|++|+++++ +++..++..+
T Consensus 80 --~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~------------------------ 129 (270)
T 2o6q_A 80 --IFKELKNLETLWVTDN-KLQALPI--GVFDQLVNLAELRLDRN-QLKSLPPRVF------------------------ 129 (270)
T ss_dssp --TTSSCTTCCEEECCSS-CCCCCCT--TTTTTCSSCCEEECCSS-CCCCCCTTTT------------------------
T ss_pred --hhcCCCCCCEEECCCC-cCCcCCH--hHcccccCCCEEECCCC-ccCeeCHHHh------------------------
Confidence 2355777777777775 3444432 11456777777777773 4544433222
Q ss_pred cccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccc
Q 009754 308 VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLIN 386 (526)
Q Consensus 308 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~ 386 (526)
..+++|+.|+++++ .++.++...+ ..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.
T Consensus 130 --------~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 195 (270)
T 2o6q_A 130 --------DSLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKR 195 (270)
T ss_dssp --------TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred --------CcCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCc
Confidence 23477777777774 4555554433 56677888888776 3555544 3566777888888775 5666
Q ss_pred cccchhhhhccCCceEEEeccc
Q 009754 387 LLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 387 l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
++.. .+..+++|+.|++++++
T Consensus 196 ~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 196 VPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTT-TTTTCTTCCEEECCSSC
T ss_pred CCHH-HhccccCCCEEEecCCC
Confidence 6553 23567777777776654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=1.9e-12 Score=124.11 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=126.8
Q ss_pred cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (526)
Q Consensus 23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 102 (526)
++.+++++.++++++ .+..+|..+ .++++.|+++++. ++...... ...+++|+.|+++++ .++.++
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~ 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDL----------PKDTTILHLSENL-LYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQ 71 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCC----------CTTCCEEECTTSC-CSEEEGGG-GTTCTTCCEEECTTS-CCCEEE
T ss_pred ccccCCccEEECCCC-CCCcCCCCC----------CCCCCEEEcCCCc-CCccCHHH-hhcCCCCCEEECCCC-ccCccc
Confidence 455666777777663 566666543 2466666666543 34333322 234677777777766 355554
Q ss_pred cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (526)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l 182 (526)
.. ..+++|++|+++ .+.+..++..+..+++|+.|+++++. ++.+.... ...+++|++|++
T Consensus 72 ~~-~~l~~L~~L~Ls---------------~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~~l~~L~~L~L 131 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLS---------------HNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGA---LRGLGELQELYL 131 (290)
T ss_dssp CC-SCCTTCCEEECC---------------SSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSST---TTTCTTCCEEEC
T ss_pred CC-CCCCcCCEEECC---------------CCcCCcCchhhccCCCCCEEECCCCc-CcccCHHH---HcCCCCCCEEEC
Confidence 43 456677777776 23334455555567788888887765 44332111 145788888888
Q ss_pred ecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCC
Q 009754 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP 262 (526)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 262 (526)
++| .++.+ +...+..+++|++|++++| .++.++.. .+..+++|+.|+++++ .++.++.. +...+
T Consensus 132 ~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~---------~~~~l~~L~~L~L~~N-~l~~ip~~---~~~~~ 195 (290)
T 1p9a_G 132 KGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAG---------LLNGLENLDTLLLQEN-SLYTIPKG---FFGSH 195 (290)
T ss_dssp TTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTT---------TTTTCTTCCEEECCSS-CCCCCCTT---TTTTC
T ss_pred CCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccCHH---------HhcCcCCCCEEECCCC-cCCccChh---hcccc
Confidence 887 45555 4444778889999999887 56665531 3456888999999885 46666554 55777
Q ss_pred CcceEeeecCC
Q 009754 263 ELQHLTIQNCP 273 (526)
Q Consensus 263 ~L~~L~l~~c~ 273 (526)
+|+.+++++++
T Consensus 196 ~L~~l~L~~Np 206 (290)
T 1p9a_G 196 LLPFAFLHGNP 206 (290)
T ss_dssp CCSEEECCSCC
T ss_pred cCCeEEeCCCC
Confidence 89999998754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.9e-12 Score=123.07 Aligned_cols=175 Identities=19% Similarity=0.232 Sum_probs=89.3
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 253 (526)
+++|++|.+.++. ++.+.. +..+++|++|++++| .+..++ .+..+++|+.|+++++ .++.++.
T Consensus 40 l~~L~~L~l~~~~-i~~~~~---l~~l~~L~~L~l~~n-~l~~~~-----------~l~~l~~L~~L~L~~n-~l~~~~~ 102 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQG---IQYLPNVRYLALGGN-KLHDIS-----------ALKELTNLTYLILTGN-QLQSLPN 102 (272)
T ss_dssp HTTCCEEECTTSC-CCCCTT---GGGCTTCCEEECTTS-CCCCCG-----------GGTTCTTCCEEECTTS-CCCCCCT
T ss_pred ccceeeeeeCCCC-cccccc---cccCCCCcEEECCCC-CCCCch-----------hhcCCCCCCEEECCCC-ccCccCh
Confidence 4566666666552 333322 556666666666665 233332 2344566666666664 3343321
Q ss_pred CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (526)
Q Consensus 254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 333 (526)
. .+..+++|++|++++| +++..++..+ ..+++|+.|+++++ .++
T Consensus 103 ~--~~~~l~~L~~L~L~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~n-~l~ 146 (272)
T 3rfs_A 103 G--VFDKLTNLKELVLVEN-QLQSLPDGVF--------------------------------DKLTNLTYLNLAHN-QLQ 146 (272)
T ss_dssp T--TTTTCTTCCEEECTTS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCC
T ss_pred h--HhcCCcCCCEEECCCC-cCCccCHHHh--------------------------------ccCCCCCEEECCCC-ccC
Confidence 1 1345666666666663 3443332211 23356666666654 344
Q ss_pred EecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 334 HLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
.++...+ ..+++|+.|++++|. ++.++.. +..+++|++|+++++ .++.++.. ....+++|++|+++++
T Consensus 147 ~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 147 SLPKGVF---DKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCHHHh---ccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC-cCCccCHH-HHhCCcCCCEEEccCC
Confidence 4443322 455666666666653 4444332 355666666666664 34444442 2345566666666554
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=4.3e-12 Score=120.80 Aligned_cols=180 Identities=18% Similarity=0.245 Sum_probs=98.9
Q ss_pred CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (526)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 252 (526)
.+++|++|++++| .++.+++ ..+..+++|++|++++| .++.++.. .+..+++|+.|+++++. +..++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~ 116 (276)
T 2z62_A 50 SFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLALG---------AFSGLSSLQKLVAVETN-LASLE 116 (276)
T ss_dssp TCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTT---------TTTTCTTCCEEECTTSC-CCCST
T ss_pred cccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCC-ccCccChh---------hhcCCccccEEECCCCC-ccccC
Confidence 3566666666665 3333322 22566666666666666 33333210 34456666666666642 33332
Q ss_pred cCCCccccCCCcceEeeecCCCCcccc-CcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754 253 NFTGNIIELPELQHLTIQNCPDMETFI-SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (526)
Q Consensus 253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 331 (526)
.. .+..+++|++|+++++ +++... +..+ ..+++|+.|+++++ .
T Consensus 117 ~~--~~~~l~~L~~L~l~~n-~l~~~~l~~~~--------------------------------~~l~~L~~L~Ls~N-~ 160 (276)
T 2z62_A 117 NF--PIGHLKTLKELNVAHN-LIQSFKLPEYF--------------------------------SNLTNLEHLDLSSN-K 160 (276)
T ss_dssp TC--CCTTCTTCCEEECCSS-CCCCCCCCGGG--------------------------------GGCTTCCEEECCSS-C
T ss_pred ch--hcccCCCCCEEECcCC-ccceecCchhh--------------------------------ccCCCCCEEECCCC-C
Confidence 11 1446666777777663 343321 1111 23467777777764 3
Q ss_pred ceEecccCChhhhhhcccc----eeEeccCcCccccCCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 332 VQHLWKENDESNKAFANLE----SLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
++.++...+ ..+++|+ .|+++++ .++.++.......+|++|+++++ .++.++.. .+..+++|+.|+++++
T Consensus 161 l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 161 IQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTT-TTTTCCSCCEEECCSS
T ss_pred CCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHh-HhcccccccEEEccCC
Confidence 555544433 4444555 6777665 35566555555567888888775 46666553 3356777777777764
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=1.6e-11 Score=116.76 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=71.1
Q ss_pred hhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccc
Q 009754 344 KAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEA 422 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 422 (526)
..+++|+.|+++++. +..++. .+..+++|++|+++++ .++.+.....+..+++|++|+++++ .++.+...
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~------ 167 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT------ 167 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG------
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHH------
Confidence 444555555555543 333322 3455566666666653 3333221113355566666666665 34443320
Q ss_pred cccccccccc----eeecccccccceecCCCccCCCCCccEEEEcCCCCceeccCC-CCCCCCcceEEeeccCCC
Q 009754 423 KDCNVFKELR----YLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQG-VLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 423 ~~~~~~~~L~----~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~l~~~~~~ 492 (526)
....+++|+ .|+++++ .++.++..... ..+|++|+++++ +++.+|.. +..+++|+.++++++++.
T Consensus 168 -~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~--~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 -DLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK--EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -GGHHHHTCTTCCEEEECCSS-CCCEECTTSSC--SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred -HhhhhhhccccceeeecCCC-cccccCccccC--CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 011233444 5666664 45666655544 457777777765 46666653 345777888888666665
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=3.6e-12 Score=121.10 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=72.1
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|+.|+++++. ++.+ .++..+++|++|+++++ .+..+ ..+..+++|++|+++++. ++.
T Consensus 39 ~l~~L~~L~l~~~~-i~~~-~~l~~l~~L~~L~l~~n---------------~l~~~-~~l~~l~~L~~L~L~~n~-l~~ 99 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSV-QGIQYLPNVRYLALGGN---------------KLHDI-SALKELTNLTYLILTGNQ-LQS 99 (272)
T ss_dssp HHTTCCEEECTTSC-CCCC-TTGGGCTTCCEEECTTS---------------CCCCC-GGGTTCTTCCEEECTTSC-CCC
T ss_pred cccceeeeeeCCCC-cccc-cccccCCCCcEEECCCC---------------CCCCc-hhhcCCCCCCEEECCCCc-cCc
Confidence 46666777766663 4433 23444555666666521 11111 133455666666666553 222
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
+.... ...+++|++|++++|. ++.+ +...+..+++|++|++++| .++.++.. .+..+++|+.|++
T Consensus 100 ~~~~~---~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~l 164 (272)
T 3rfs_A 100 LPNGV---FDKLTNLKELVLVENQ-LQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPKG---------VFDKLTNLTELDL 164 (272)
T ss_dssp CCTTT---TTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCCEEEC
T ss_pred cChhH---hcCCcCCCEEECCCCc-CCcc-CHHHhccCCCCCEEECCCC-ccCccCHH---------HhccCccCCEEEC
Confidence 21110 1235566666666653 3333 2222455666666666665 34333210 2344556666666
Q ss_pred CCCccccccccCCCccccCCCcceEeeecC
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNC 272 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 272 (526)
+++ .++.++.. .+..+++|++|++++|
T Consensus 165 ~~n-~l~~~~~~--~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 165 SYN-QLQSLPEG--VFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CSS-CCCCCCTT--TTTTCTTCCEEECCSS
T ss_pred CCC-CcCccCHH--HhcCCccCCEEECCCC
Confidence 654 23333221 1335555666666553
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.4e-11 Score=116.89 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=95.1
Q ss_pred CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccc
Q 009754 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (526)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 252 (526)
.+++|++|+++++ .++.+ +...+..+++|++|++++| .++.++.. .+..+++|+.|+++++ .++.++
T Consensus 59 ~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n-~l~~~~~~---------~~~~l~~L~~L~l~~n-~l~~~~ 125 (270)
T 2o6q_A 59 RLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDN-KLQALPIG---------VFDQLVNLAELRLDRN-QLKSLP 125 (270)
T ss_dssp SCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSS-CCCCCCTT---------TTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCC-cCCcCCHh---------HcccccCCCEEECCCC-ccCeeC
Confidence 4566666666665 34444 3333566777777777766 34444320 3345677777777764 344442
Q ss_pred cCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCc
Q 009754 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (526)
Q Consensus 253 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 332 (526)
. ..+..+++|++|+++++ +++..++..+ ..+++|+.|+++++ .+
T Consensus 126 ~--~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~n-~l 169 (270)
T 2o6q_A 126 P--RVFDSLTKLTYLSLGYN-ELQSLPKGVF--------------------------------DKLTSLKELRLYNN-QL 169 (270)
T ss_dssp T--TTTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CC
T ss_pred H--HHhCcCcCCCEEECCCC-cCCccCHhHc--------------------------------cCCcccceeEecCC-cC
Confidence 2 11456777777777774 4554433222 23477888888774 45
Q ss_pred eEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeecccc
Q 009754 333 QHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCH 382 (526)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 382 (526)
+.++...+ ..+++|+.|+++++ .++.++. .+..+++|+.|++++++
T Consensus 170 ~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 55554433 56788888888886 4666654 36677888888888754
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=3.3e-11 Score=108.43 Aligned_cols=152 Identities=11% Similarity=0.119 Sum_probs=80.5
Q ss_pred cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (526)
Q Consensus 23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 102 (526)
.+.+++|++|+++++ .+..+| .+.. +++|++|++.++ .++.... ...+++|+.|++++|..-...+
T Consensus 40 ~~~l~~L~~L~l~~n-~i~~l~-~l~~--------l~~L~~L~l~~n-~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANI-NVTDLT-GIEY--------AHNIKDLTINNI-HATNYNP---ISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHHTCCEEEEESS-CCSCCT-TGGG--------CTTCSEEEEESC-CCSCCGG---GTTCTTCCEEEEECTTCBGGGS
T ss_pred hhhcCCccEEeccCC-CccChH-HHhc--------CCCCCEEEccCC-CCCcchh---hhcCCCCCEEEeECCccCcccC
Confidence 356677788888775 566666 4444 677777777766 4444321 3356777777777764332344
Q ss_pred cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (526)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l 182 (526)
..+..+++|++|++++ +......+..+..+++|++|+++++..++++. .. ..+++|++|++
T Consensus 106 ~~l~~l~~L~~L~Ls~--------------n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l----~~l~~L~~L~l 166 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISH--------------SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL----KTLPELKSLNI 166 (197)
T ss_dssp CCCTTCTTCCEEECCS--------------SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG----GGCSSCCEEEC
T ss_pred hhhcCCCCCCEEEecC--------------CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hh----cCCCCCCEEEC
Confidence 5555566666666662 11111233444455555666555554333322 11 23455555555
Q ss_pred ecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNC 211 (526)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (526)
++| .++++++ +..+++|++|++++|
T Consensus 167 ~~n-~i~~~~~---l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 167 QFD-GVHDYRG---IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TTB-CCCCCTT---GGGCSSCCEEEECBC
T ss_pred CCC-CCcChHH---hccCCCCCEEEeeCc
Confidence 554 2333321 445555555555544
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=1.2e-11 Score=118.62 Aligned_cols=150 Identities=14% Similarity=0.217 Sum_probs=89.1
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|+.|++++| .++.++. +..+++|++|++++ +.+..++ .+..+++|+.|+++++. ++.
T Consensus 66 ~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~---------------n~l~~~~-~l~~l~~L~~L~L~~n~-i~~ 126 (291)
T 1h6t_A 66 YLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDE---------------NKVKDLS-SLKDLKKLKSLSLEHNG-ISD 126 (291)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS---------------SCCCCGG-GGTTCTTCCEEECTTSC-CCC
T ss_pred cCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCC---------------CcCCCCh-hhccCCCCCEEECCCCc-CCC
Confidence 3455555555554 2333333 44455555555552 1122222 24566777777777664 333
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEec
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 242 (526)
+. .. ..+++|++|++++| .++.+ + .+..+++|++|++++| .++.++. ...+++|+.|++
T Consensus 127 ~~-~l----~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~N-~l~~~~~-----------l~~l~~L~~L~L 185 (291)
T 1h6t_A 127 IN-GL----VHLPQLESLYLGNN-KITDI-T--VLSRLTKLDTLSLEDN-QISDIVP-----------LAGLTKLQNLYL 185 (291)
T ss_dssp CG-GG----GGCTTCCEEECCSS-CCCCC-G--GGGGCTTCSEEECCSS-CCCCCGG-----------GTTCTTCCEEEC
T ss_pred Ch-hh----cCCCCCCEEEccCC-cCCcc-h--hhccCCCCCEEEccCC-ccccchh-----------hcCCCccCEEEC
Confidence 21 11 35678888888877 34444 2 2778888888888887 4555432 346788888888
Q ss_pred CCCccccccccCCCccccCCCcceEeeecCCCCccc
Q 009754 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF 278 (526)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 278 (526)
+++ .+++++. +..+++|+.|+++++ .+...
T Consensus 186 ~~N-~i~~l~~----l~~l~~L~~L~l~~n-~i~~~ 215 (291)
T 1h6t_A 186 SKN-HISDLRA----LAGLKNLDVLELFSQ-ECLNK 215 (291)
T ss_dssp CSS-CCCBCGG----GTTCTTCSEEEEEEE-EEECC
T ss_pred CCC-cCCCChh----hccCCCCCEEECcCC-cccCC
Confidence 886 4565532 567888888888884 44443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=1.5e-12 Score=130.34 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=8.6
Q ss_pred hhhhhcCCCCCcEEEeecC
Q 009754 139 CYEEMIGFRDMEYLQLSYF 157 (526)
Q Consensus 139 l~~~~~~~~~L~~L~l~~~ 157 (526)
+...+..+++|+.|+++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n 42 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGN 42 (386)
T ss_dssp TSHHHHHCSCCCEEECTTS
T ss_pred HHHHHhcCCCccEEECCCC
Confidence 3333444444555555444
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=119.27 Aligned_cols=205 Identities=18% Similarity=0.096 Sum_probs=111.8
Q ss_pred ccccceeeeccccccccccccCce-ecCCCccEEEecCCCCccccc----cCcccCCCeeeEEecccccccceeeecccc
Q 009754 58 FSKLKVLILDYLPTLTSFCLENYT-LEFPSLERVSMTHCPNMKTFS----HGILSTPKLHKVQVTEKEEGELHHWEGNKL 132 (526)
Q Consensus 58 l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 132 (526)
+++|++|++.++. ++...+.... ..+++|+.|+++++..-...+ ..+..+++|++|++++
T Consensus 90 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~-------------- 154 (310)
T 4glp_A 90 YSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ-------------- 154 (310)
T ss_dssp HSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC--------------
T ss_pred cCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC--------------
Confidence 4567777777653 3322222111 457777777777774322211 1223466777777772
Q ss_pred chhhHHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCC--hHHHhcCCCCCeeeec
Q 009754 133 NSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVR 209 (526)
Q Consensus 133 ~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~ 209 (526)
+.+..++ ..+..+++|++|+++++.-..............+++|++|++++|. ++.++. ...++.+++|++|+++
T Consensus 155 -n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 155 -AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp -CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECT
T ss_pred -CCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECC
Confidence 2222232 4455677788888877763221100000111346778888888773 443211 1135677888888888
Q ss_pred cccccchh-ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCcccc----Ccccc
Q 009754 210 NCDSIEEV-LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFI----SNSVV 284 (526)
Q Consensus 210 ~~~~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~ 284 (526)
+|. +... |...+ ....+++|++|+++++ .++.+|.. -+++|++|+++++ +++.++ ...++
T Consensus 233 ~N~-l~~~~p~~~~-------~~~~~~~L~~L~Ls~N-~l~~lp~~-----~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 233 HNS-LRATVNPSAP-------RCMWSSALNSLNLSFA-GLEQVPKG-----LPAKLRVLDLSSN-RLNRAPQPDELPEVD 297 (310)
T ss_dssp TSC-CCCCCCSCCS-------SCCCCTTCCCEECCSS-CCCSCCSC-----CCSCCSCEECCSC-CCCSCCCTTSCCCCS
T ss_pred CCC-CCccchhhHH-------hccCcCcCCEEECCCC-CCCchhhh-----hcCCCCEEECCCC-cCCCCchhhhCCCcc
Confidence 774 4433 32110 1222368888888775 45555432 2368888888874 566543 35667
Q ss_pred eeeecCCCCc
Q 009754 285 HVTTDNKEPQ 294 (526)
Q Consensus 285 ~L~i~~~~~~ 294 (526)
.++++++.+.
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 7777776654
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=4e-11 Score=114.94 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=125.0
Q ss_pred cccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCc
Q 009754 19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM 98 (526)
Q Consensus 19 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 98 (526)
.+.++..+++|+.|++++| .+..++. +.. +++|++|+++++ .++++.. ...+++|+.|+++++. +
T Consensus 38 ~~~~~~~l~~L~~L~l~~~-~i~~~~~-~~~--------l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l 102 (291)
T 1h6t_A 38 DAVTQNELNSIDQIIANNS-DIKSVQG-IQY--------LPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-V 102 (291)
T ss_dssp SEECHHHHHTCCEEECTTS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-C
T ss_pred cccchhhcCcccEEEccCC-CcccChh-Hhc--------CCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-C
Confidence 3455667888999999886 6777753 444 788999988875 3455443 3468899999999884 5
Q ss_pred cccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCcc
Q 009754 99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA 178 (526)
Q Consensus 99 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 178 (526)
+.++ .+..+++|++|+++++ .+..+ ..+..+++|+.|+++++. ++.+ ... ..+++|+
T Consensus 103 ~~~~-~l~~l~~L~~L~L~~n---------------~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l----~~l~~L~ 159 (291)
T 1h6t_A 103 KDLS-SLKDLKKLKSLSLEHN---------------GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVL----SRLTKLD 159 (291)
T ss_dssp CCGG-GGTTCTTCCEEECTTS---------------CCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGG----GGCTTCS
T ss_pred CCCh-hhccCCCCCEEECCCC---------------cCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhh----ccCCCCC
Confidence 6654 3667888999998842 22222 345678899999999876 4433 122 4678999
Q ss_pred EEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
+|++++| .++.+++ +..+++|++|++++| .++.++ .+..+++|+.|++++++
T Consensus 160 ~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~-----------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 160 TLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLR-----------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCG-----------GGTTCTTCSEEEEEEEE
T ss_pred EEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCCh-----------hhccCCCCCEEECcCCc
Confidence 9999988 4565544 788999999999998 566654 33568999999999864
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=2e-11 Score=128.63 Aligned_cols=172 Identities=18% Similarity=0.211 Sum_probs=96.0
Q ss_pred ccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcc
Q 009754 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (526)
Q Consensus 20 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 99 (526)
+.++..+++|+.|++++| .+..++. +.. +++|+.|+++++ .+++++. ...+++|+.|++++| .++
T Consensus 36 ~~~~~~L~~L~~L~l~~n-~i~~l~~-l~~--------l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~ 100 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNS-DIKSVQG-IQY--------LPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIK 100 (605)
T ss_dssp EECHHHHTTCCCCBCTTC-CCCCCTT-GGG--------CTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCC
T ss_pred ccchhcCCCCCEEECcCC-CCCCChH-Hcc--------CCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCC
Confidence 344556777777777775 4666552 333 667777777664 3444333 335677777777776 344
Q ss_pred ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccE
Q 009754 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (526)
Q Consensus 100 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 179 (526)
.++ .+..+++|+.|+++++ .+..+ ..+..+++|+.|+|+++. ++.+ ... ..+++|+.
T Consensus 101 ~l~-~l~~l~~L~~L~Ls~N---------------~l~~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l----~~l~~L~~ 157 (605)
T 1m9s_A 101 DLS-SLKDLKKLKSLSLEHN---------------GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVL----SRLTKLDT 157 (605)
T ss_dssp CCT-TSTTCTTCCEEECTTS---------------CCCCC-GGGGGCTTCSEEECCSSC-CCCC-GGG----GSCTTCSE
T ss_pred CCh-hhccCCCCCEEEecCC---------------CCCCC-ccccCCCccCEEECCCCc-cCCc-hhh----cccCCCCE
Confidence 443 4555666777776632 11222 234456667777766654 3322 111 34566666
Q ss_pred EEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754 180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (526)
Q Consensus 180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (526)
|++++| .+..+++ +..+++|++|++++| .+..++ .+..+++|+.|+++++
T Consensus 158 L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~-----------~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 158 LSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLR-----------ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCG-----------GGTTCTTCSEEECCSE
T ss_pred EECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCCh-----------HHccCCCCCEEEccCC
Confidence 666666 3444333 566666777776666 344433 2344666666666665
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.21 E-value=2.3e-10 Score=107.07 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=82.9
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 253 (526)
.+++++|+++++. ++.+.+ ..+..+++|++|++++| .++.++.. .+..+++|+.|+++++ .++.++.
T Consensus 34 ~~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~ 100 (251)
T 3m19_A 34 PADTEKLDLQSTG-LATLSD-ATFRGLTKLTWLNLDYN-QLQTLSAG---------VFDDLTELGTLGLANN-QLASLPL 100 (251)
T ss_dssp CTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTT---------TTTTCTTCCEEECTTS-CCCCCCT
T ss_pred CCCCCEEEccCCC-cCccCH-hHhcCcccCCEEECCCC-cCCccCHh---------HhccCCcCCEEECCCC-cccccCh
Confidence 3567777777763 444433 22667777777777776 34443210 3455677777777765 3444421
Q ss_pred CCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCce
Q 009754 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (526)
Q Consensus 254 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 333 (526)
..+..+++|++|+++++ +++.+++..+ ..+++|+.|+++++ .++
T Consensus 101 --~~~~~l~~L~~L~L~~N-~l~~~~~~~~--------------------------------~~l~~L~~L~Ls~N-~l~ 144 (251)
T 3m19_A 101 --GVFDHLTQLDKLYLGGN-QLKSLPSGVF--------------------------------DRLTKLKELRLNTN-QLQ 144 (251)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCC
T ss_pred --hHhcccCCCCEEEcCCC-cCCCcChhHh--------------------------------ccCCcccEEECcCC-cCC
Confidence 11446667777777663 4444332221 12356666666653 344
Q ss_pred EecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccc
Q 009754 334 HLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC 381 (526)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 381 (526)
.++...+ ..+++|+.|+++++. ++.++. .+..+++|++|+++++
T Consensus 145 ~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 145 SIPAGAF---DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCHHHc---CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 4444322 455666666666542 344432 3455566666666554
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=5.2e-11 Score=115.32 Aligned_cols=188 Identities=11% Similarity=0.030 Sum_probs=110.3
Q ss_pred cCCCccEEEecCCCCccccccCc--ccCCCeeeEEecccccccceeeeccccchhhHHhh-hhhcCCCCCcEEEeecCCC
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGI--LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPH 159 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~ 159 (526)
.+++|++|++++|..-...|..+ ..+++|++|+++++.-. .....+. ..+..+++|++|+++++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-----------~~~~~~~~~~~~~~~~L~~L~Ls~n~- 156 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA-----------TGRSWLAELQQWLKPGLKVLSIAQAH- 156 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS-----------STTSSHHHHHTTBCSCCCEEEEECCS-
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc-----------chhhhhHHHHhhhccCCCEEEeeCCC-
Confidence 35779999999996555666665 67888999999842110 0000111 233467889999998876
Q ss_pred Cceec-cCCCCCcCCCCCccEEEEecCCCccc--CCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCc
Q 009754 160 LKEIW-HGQALPVSFFNNLARLVVDDCTNMSS--AIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPK 236 (526)
Q Consensus 160 l~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 236 (526)
+.... ... ..+++|++|++++|..... +++...+..+++|++|++++| .++.++..... ..+.+++
T Consensus 157 l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~------l~~~l~~ 225 (310)
T 4glp_A 157 SPAFSCEQV----RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAA------LAAAGVQ 225 (310)
T ss_dssp SCCCCTTSC----CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHH------HHHHTCC
T ss_pred cchhhHHHh----ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHH------HHhcCCC
Confidence 33222 122 3578899999988853321 111111367888999999888 45544321000 1235688
Q ss_pred cceEecCCCcccccc-ccCCCccccCCCcceEeeecCCCCcccc---CcccceeeecCCCCcc
Q 009754 237 LYGLRLIDLPKLKRF-CNFTGNIIELPELQHLTIQNCPDMETFI---SNSVVHVTTDNKEPQK 295 (526)
Q Consensus 237 L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~ 295 (526)
|++|+++++. +... |........+++|++|+++++ +++.++ +..++.|+++++.+.+
T Consensus 226 L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 226 PHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp CSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred CCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCcCCC
Confidence 8999998864 4444 333221223478888888884 566554 2344444444444433
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=8.4e-11 Score=105.74 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=39.7
Q ss_pred CCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccc-c
Q 009754 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR-F 251 (526)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~ 251 (526)
.+++|++|+++++ .+++++. +..+++|++|++++| .++.++ .+..+++|+.|+++++. ++. .
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~l~~n-~~~~~~-----------~l~~l~~L~~L~l~~n~-l~~~~ 104 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLTG---IEYAHNIKDLTINNI-HATNYN-----------PISGLSNLERLRIMGKD-VTSDK 104 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCTT---GGGCTTCSEEEEESC-CCSCCG-----------GGTTCTTCCEEEEECTT-CBGGG
T ss_pred hcCCccEEeccCC-CccChHH---HhcCCCCCEEEccCC-CCCcch-----------hhhcCCCCCEEEeECCc-cCccc
Confidence 3556666666665 3344321 566666666666666 333332 22345556666665542 222 1
Q ss_pred ccCCCccccCCCcceEeeecC
Q 009754 252 CNFTGNIIELPELQHLTIQNC 272 (526)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~~c 272 (526)
+.. +..+++|++|++++|
T Consensus 105 ~~~---l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 105 IPN---LSGLTSLTLLDISHS 122 (197)
T ss_dssp SCC---CTTCTTCCEEECCSS
T ss_pred Chh---hcCCCCCCEEEecCC
Confidence 111 344555555555553
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=3.3e-10 Score=106.01 Aligned_cols=176 Identities=17% Similarity=0.153 Sum_probs=119.5
Q ss_pred CCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccC
Q 009754 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (526)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 254 (526)
.+.++++++++ .++.++. . -.+.+++|++++| .+..++.. .+..+++|+.|+++++ .+..++.
T Consensus 14 ~~~~~l~~~~~-~l~~~p~-~---~~~~l~~L~L~~n-~l~~~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~- 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS-G---IPADTEKLDLQST-GLATLSDA---------TFRGLTKLTWLNLDYN-QLQTLSA- 76 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS-C---CCTTCCEEECTTS-CCCCCCTT---------TTTTCTTCCEEECTTS-CCCCCCT-
T ss_pred CCCeEEecCCC-CccccCC-C---CCCCCCEEEccCC-CcCccCHh---------HhcCcccCCEEECCCC-cCCccCH-
Confidence 45667777765 4555532 1 2368899999888 44444321 4567889999999886 4555422
Q ss_pred CCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceE
Q 009754 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH 334 (526)
Q Consensus 255 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 334 (526)
..+..+++|++|+++++ +++..++..+ ..+++|+.|+++++ .++.
T Consensus 77 -~~~~~l~~L~~L~L~~n-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~l~~ 121 (251)
T 3m19_A 77 -GVFDDLTELGTLGLANN-QLASLPLGVF--------------------------------DHLTQLDKLYLGGN-QLKS 121 (251)
T ss_dssp -TTTTTCTTCCEEECTTS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCCC
T ss_pred -hHhccCCcCCEEECCCC-cccccChhHh--------------------------------cccCCCCEEEcCCC-cCCC
Confidence 22567888999998884 5665543332 24488899999885 5666
Q ss_pred ecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEeccc
Q 009754 335 LWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (526)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 408 (526)
++...+ ..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.++.. .+..+++|+.|++++++
T Consensus 122 ~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 122 LPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred cChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCc
Confidence 665543 66788999999886 5666665 5777888999999885 56666653 34677888888888764
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=7.7e-12 Score=125.19 Aligned_cols=242 Identities=14% Similarity=0.082 Sum_probs=130.1
Q ss_pred cccCCcCCCceEEecccccccEe-ccccccccccccccccccceeeeccc--cccccccccCc------eecCCCccEEE
Q 009754 21 FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENY------TLEFPSLERVS 91 (526)
Q Consensus 21 ~~~~~l~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~------~~~~~~L~~L~ 91 (526)
..+..+++|++|+|++| .+... +..+.. ....+++|++|+++++ ..++...+... ...+++|++|+
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~----~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSE----NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHH----TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHH----HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34556777888888886 44432 111110 1113777888888765 22322111100 13568888888
Q ss_pred ecCCCCcc----ccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCC---------CCCcEEEeecCC
Q 009754 92 MTHCPNMK----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGF---------RDMEYLQLSYFP 158 (526)
Q Consensus 92 l~~c~~l~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~~~ 158 (526)
+++|..-. .++..+..+++|++|+++++.-. ......+...+..+ ++|++|+++++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~----------~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG----------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH----------HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC----------HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 88774322 24555566778888888742100 00111222333333 788888888776
Q ss_pred CCceeccCC-CCCcCCCCCccEEEEecCCCccc-----CCChHHHhcCCCCCeeeecccccc----chhccccccccccC
Q 009754 159 HLKEIWHGQ-ALPVSFFNNLARLVVDDCTNMSS-----AIPANLLRCLNNLQWLEVRNCDSI----EEVLHLEEQNADKE 228 (526)
Q Consensus 159 ~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~l~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~~~ 228 (526)
+++..... .-....+++|++|++++|. ++. +.+ ..+..+++|++|++++|..- ..++.
T Consensus 171 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~-~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--------- 238 (386)
T 2ca6_A 171 -LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAI--------- 238 (386)
T ss_dssp -CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHHHH---------
T ss_pred -CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHH-HHhhcCCCccEEECcCCCCCcHHHHHHHH---------
Confidence 32110000 0000245678888888773 331 101 02567788888888877421 33332
Q ss_pred CCCCCCCccceEecCCCcccccc-----ccCCCcc--ccCCCcceEeeecCCCCcc-----cc------CcccceeeecC
Q 009754 229 HRGPLFPKLYGLRLIDLPKLKRF-----CNFTGNI--IELPELQHLTIQNCPDMET-----FI------SNSVVHVTTDN 290 (526)
Q Consensus 229 ~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~--~~~~~L~~L~l~~c~~l~~-----~~------~~~L~~L~i~~ 290 (526)
.+..+++|+.|+++++. ++.. +.. + ..+++|++|++++| .+.. ++ ...|+.|++++
T Consensus 239 -~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~---l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 239 -ALKSWPNLRELGLNDCL-LSARGAAAVVDA---FSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp -HGGGCTTCCEEECTTCC-CCHHHHHHHHHH---HHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred -HHccCCCcCEEECCCCC-CchhhHHHHHHH---HhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 33456778888888764 3322 111 2 23778888888875 4555 32 36677888887
Q ss_pred CCCcc
Q 009754 291 KEPQK 295 (526)
Q Consensus 291 ~~~~~ 295 (526)
+.+..
T Consensus 313 N~l~~ 317 (386)
T 2ca6_A 313 NRFSE 317 (386)
T ss_dssp SBSCT
T ss_pred CcCCc
Confidence 77664
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=1.5e-10 Score=122.03 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=129.7
Q ss_pred ccceeEEeeccCceeecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCcee
Q 009754 3 FLLFYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (526)
++.|+.|+++.+. +..++.++.+++|+.|+|++| .+..++. +.. +++|+.|+++++ .++..+. ..
T Consensus 42 L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~--------l~~L~~L~Ls~N-~l~~l~~---l~ 106 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LTN--------LKNLGWLFLDEN-KIKDLSS---LK 106 (605)
T ss_dssp HTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTS-CCCCCGG-GGG--------CTTCCEEECCSS-CCCCCTT---ST
T ss_pred CCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCC-CCCCChh-hcc--------CCCCCEEECcCC-CCCCChh---hc
Confidence 5788999998665 445778999999999999997 6888775 554 899999999986 4555432 45
Q ss_pred cCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCce
Q 009754 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (526)
Q Consensus 83 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 162 (526)
.+++|+.|++++|. +..+ ..+..+++|+.|+++++ .+..+ ..+..+++|+.|+|+++. +..
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N---------------~l~~l-~~l~~l~~L~~L~Ls~N~-l~~ 167 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN---------------KITDI-TVLSRLTKLDTLSLEDNQ-ISD 167 (605)
T ss_dssp TCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSS---------------CCCCC-GGGGSCTTCSEEECCSSC-CCC
T ss_pred cCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCC---------------ccCCc-hhhcccCCCCEEECcCCc-CCC
Confidence 79999999999995 5655 45677999999999842 23333 456789999999999986 443
Q ss_pred eccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS 213 (526)
Q Consensus 163 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (526)
+.. ...+++|+.|++++| .++.+ +. +..+++|+.|++++|..
T Consensus 168 ~~~-----l~~l~~L~~L~Ls~N-~i~~l-~~--l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 168 IVP-----LAGLTKLQNLYLSKN-HISDL-RA--LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CGG-----GTTCTTCCEEECCSS-CCCBC-GG--GTTCTTCSEEECCSEEE
T ss_pred chh-----hccCCCCCEEECcCC-CCCCC-hH--HccCCCCCEEEccCCcC
Confidence 221 256899999999998 56665 33 88999999999999843
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=1e-09 Score=114.37 Aligned_cols=192 Identities=16% Similarity=0.172 Sum_probs=133.7
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcc
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 106 (526)
.+|+.|+++++ .+..+|..+ +++|++|+++++ .++.++ ..+++|+.|++++| .++.+|. +.
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l----------~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNL----------PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPE-LP 119 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCC----------CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-CC
T ss_pred CCccEEEeCCC-CCCccCHhH----------cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcch-hh
Confidence 38999999996 688888753 468999999875 455555 24799999999998 5677776 43
Q ss_pred cCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCC
Q 009754 107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT 186 (526)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 186 (526)
. +|++|++++ +.+..++. .+++|+.|+++++. ++. ++ ..+++|++|++++|
T Consensus 120 ~--~L~~L~Ls~---------------N~l~~lp~---~l~~L~~L~Ls~N~-l~~------lp-~~l~~L~~L~Ls~N- 170 (571)
T 3cvr_A 120 A--SLKHLDVDN---------------NQLTMLPE---LPALLEYINADNNQ-LTM------LP-ELPTSLEVLSVRNN- 170 (571)
T ss_dssp T--TCCEEECCS---------------SCCSCCCC---CCTTCCEEECCSSC-CSC------CC-CCCTTCCEEECCSS-
T ss_pred c--CCCEEECCC---------------CcCCCCCC---cCccccEEeCCCCc-cCc------CC-CcCCCcCEEECCCC-
Confidence 3 899999983 33444554 57899999999886 433 23 24689999999998
Q ss_pred CcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcce
Q 009754 187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQH 266 (526)
Q Consensus 187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 266 (526)
.++.++. +. ++|++|++++| .++.+|.+.+ . .....+.|+.|+++++ .++.+|.. +..+++|+.
T Consensus 171 ~L~~lp~---l~--~~L~~L~Ls~N-~L~~lp~~~~--~----L~~~~~~L~~L~Ls~N-~l~~lp~~---l~~l~~L~~ 234 (571)
T 3cvr_A 171 QLTFLPE---LP--ESLEALDVSTN-LLESLPAVPV--R----NHHSEETEIFFRCREN-RITHIPEN---ILSLDPTCT 234 (571)
T ss_dssp CCSCCCC---CC--TTCCEEECCSS-CCSSCCCCC--------------CCEEEECCSS-CCCCCCGG---GGGSCTTEE
T ss_pred CCCCcch---hh--CCCCEEECcCC-CCCchhhHHH--h----hhcccccceEEecCCC-cceecCHH---HhcCCCCCE
Confidence 4566543 33 89999999998 6767664210 0 0111233399999986 56777654 557999999
Q ss_pred EeeecCCCCccccCccc
Q 009754 267 LTIQNCPDMETFISNSV 283 (526)
Q Consensus 267 L~l~~c~~l~~~~~~~L 283 (526)
|+++++ .++...+..+
T Consensus 235 L~L~~N-~l~~~~p~~l 250 (571)
T 3cvr_A 235 IILEDN-PLSSRIRESL 250 (571)
T ss_dssp EECCSS-SCCHHHHHHH
T ss_pred EEeeCC-cCCCcCHHHH
Confidence 999995 5665544433
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.02 E-value=6.1e-10 Score=104.93 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=90.6
Q ss_pred CcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccC
Q 009754 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG 104 (526)
Q Consensus 25 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 104 (526)
.+.+++.++++++ .+.+++ .+.. +++|++|++.++ .+++++ . ...+++|+.|++++| .++.++.
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~-~~~~--------l~~L~~L~l~~n-~i~~l~-~--l~~l~~L~~L~L~~N-~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV-SQKE--------LSGVQNFNGDNS-NIQSLA-G--MQFFTNLKELHLSHN-QISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE-CHHH--------HTTCSEEECTTS-CCCCCT-T--GGGCTTCCEEECCSS-CCCCCGG-
T ss_pred HHHHHHHHHhcCC-Cccccc-chhh--------cCcCcEEECcCC-Ccccch-H--HhhCCCCCEEECCCC-ccCCChh-
Confidence 3444455555553 444444 2222 555555555543 333332 1 234566666666655 3444443
Q ss_pred cccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEec
Q 009754 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD 184 (526)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 184 (526)
+..+++|++|++++ +.+..++.. .. ++|+.|+++++. ++.+. .. ..+++|++|++++
T Consensus 81 l~~l~~L~~L~L~~---------------N~l~~l~~~-~~-~~L~~L~L~~N~-l~~~~-~l----~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 81 LKDLTKLEELSVNR---------------NRLKNLNGI-PS-ACLSRLFLDNNE-LRDTD-SL----IHLKNLEILSIRN 137 (263)
T ss_dssp GTTCSSCCEEECCS---------------SCCSCCTTC-CC-SSCCEEECCSSC-CSBSG-GG----TTCTTCCEEECTT
T ss_pred hccCCCCCEEECCC---------------CccCCcCcc-cc-CcccEEEccCCc-cCCCh-hh----cCcccccEEECCC
Confidence 44556666666652 122222221 12 667777777664 33321 11 4567788888877
Q ss_pred CCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754 185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
| .++.+ +. +..+++|++|++++| .++.+. .+..+++|+.|++++++
T Consensus 138 N-~i~~~-~~--l~~l~~L~~L~L~~N-~i~~~~-----------~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 138 N-KLKSI-VM--LGFLSKLEVLDLHGN-EITNTG-----------GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp S-CCCBC-GG--GGGCTTCCEEECTTS-CCCBCT-----------TSTTCCCCCEEEEEEEE
T ss_pred C-cCCCC-hH--HccCCCCCEEECCCC-cCcchH-----------HhccCCCCCEEeCCCCc
Confidence 7 35554 22 777888888888877 444442 45567888888887753
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=2.8e-11 Score=119.91 Aligned_cols=85 Identities=16% Similarity=0.038 Sum_probs=42.4
Q ss_pred CccEEEecCCCCceEecccCCh-hhhhh-cccceeEeccCcCccc-----cCCCCCC-CCCCCEEeeccccCccccccch
Q 009754 320 RLRWLELSGLHKVQHLWKENDE-SNKAF-ANLESLEISECSKLQK-----LVPPSWH-LENLEALEVSKCHGLINLLTFS 391 (526)
Q Consensus 320 ~L~~L~l~~~~~l~~l~~~~~~-~~~~l-~~L~~L~l~~c~~l~~-----l~~~~~~-l~~L~~L~l~~c~~l~~l~~~~ 391 (526)
+|++|+++++ .++......+. ....+ ++|+.|++++|. +++ ++..+.. .++|++|+++++ .+++.+...
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 244 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLEN 244 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHH
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHH
Confidence 7777777765 33332221111 11223 467777777653 333 3333333 246777777764 444443311
Q ss_pred ---hhhhccCCceEEEecc
Q 009754 392 ---TSESLVNLGRMMIADC 407 (526)
Q Consensus 392 ---~~~~l~~L~~L~i~~c 407 (526)
....+++|++|++++|
T Consensus 245 l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHhcCCCccEEEeccC
Confidence 2244566677776665
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=4.8e-11 Score=118.26 Aligned_cols=61 Identities=13% Similarity=-0.036 Sum_probs=29.7
Q ss_pred CCccEEEecCCCCceEecccCCh-hhhh-hcccceeEeccCcCcccc-----CCCCCCCCCCCEEeeccc
Q 009754 319 PRLRWLELSGLHKVQHLWKENDE-SNKA-FANLESLEISECSKLQKL-----VPPSWHLENLEALEVSKC 381 (526)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~-~~~~-l~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c 381 (526)
++|+.|+++++. +++.....++ .... .++|+.|++++|. +++. ...+..+++|+.|++++|
T Consensus 196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 367777776643 3331111011 0122 2467777776653 3322 123355566777777665
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.00 E-value=1.6e-09 Score=113.03 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=128.1
Q ss_pred ceeEEeeccCceeecccc-cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceec
Q 009754 5 LFYFFNIHTHAHTFAYFQ-VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE 83 (526)
Q Consensus 5 ~l~~l~~~~~~~~~~~~~-~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (526)
+++.++++.+.... ++. + +++|++|+|+++ .+..+| . . +++|++|+++++ .++.++. .
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip-~--~--------l~~L~~L~Ls~N-~l~~ip~--l--- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP-E--L--------PASLEYLDACDN-RLSTLPE--L--- 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC-C--C--------CTTCCEEECCSS-CCSCCCC--C---
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc-c--c--------cCCCCEEEccCC-CCCCcch--h---
Confidence 78899999876544 443 4 589999999996 788888 2 2 789999999986 5555443 1
Q ss_pred CCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCcee
Q 009754 84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI 163 (526)
Q Consensus 84 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 163 (526)
..+|+.|++++| .++.+|. .+++|+.|++++ +.+..++. .+++|+.|+++++. ++.+
T Consensus 119 ~~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~---------------N~l~~lp~---~l~~L~~L~Ls~N~-L~~l 175 (571)
T 3cvr_A 119 PASLKHLDVDNN-QLTMLPE---LPALLEYINADN---------------NQLTMLPE---LPTSLEVLSVRNNQ-LTFL 175 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS---------------SCCSCCCC---CCTTCCEEECCSSC-CSCC
T ss_pred hcCCCEEECCCC-cCCCCCC---cCccccEEeCCC---------------CccCcCCC---cCCCcCEEECCCCC-CCCc
Confidence 229999999998 4677776 578999999983 33344444 46899999999986 4433
Q ss_pred ccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCC-------CeeeeccccccchhccccccccccCCCCCCCCc
Q 009754 164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNL-------QWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPK 236 (526)
Q Consensus 164 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 236 (526)
+. . .++|++|++++| .++.++. +.. +| +.|++++| .++.+|. .+..+++
T Consensus 176 p~-l------~~~L~~L~Ls~N-~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~----------~l~~l~~ 231 (571)
T 3cvr_A 176 PE-L------PESLEALDVSTN-LLESLPA---VPV--RNHHSEETEIFFRCREN-RITHIPE----------NILSLDP 231 (571)
T ss_dssp CC-C------CTTCCEEECCSS-CCSSCCC---CC----------CCEEEECCSS-CCCCCCG----------GGGGSCT
T ss_pred ch-h------hCCCCEEECcCC-CCCchhh---HHH--hhhcccccceEEecCCC-cceecCH----------HHhcCCC
Confidence 22 2 289999999998 5666543 222 56 99999998 6777775 3456899
Q ss_pred cceEecCCCcccc
Q 009754 237 LYGLRLIDLPKLK 249 (526)
Q Consensus 237 L~~L~l~~~~~l~ 249 (526)
|+.|++++++--.
T Consensus 232 L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 232 TCTIILEDNPLSS 244 (571)
T ss_dssp TEEEECCSSSCCH
T ss_pred CCEEEeeCCcCCC
Confidence 9999999975433
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=1.7e-09 Score=101.79 Aligned_cols=170 Identities=16% Similarity=0.226 Sum_probs=124.2
Q ss_pred ccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEecccccccceeeeccccchhhH
Q 009754 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (526)
Q Consensus 58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 137 (526)
+.++..+.+.+ ..+++... ...+++|+.|++++| .++.++ ++..+++|++|++++ +.+.
T Consensus 18 l~~l~~l~l~~-~~i~~~~~---~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~---------------N~i~ 76 (263)
T 1xeu_A 18 LANAVKQNLGK-QSVTDLVS---QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSH---------------NQIS 76 (263)
T ss_dssp HHHHHHHHHTC-SCTTSEEC---HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCS---------------SCCC
T ss_pred HHHHHHHHhcC-CCcccccc---hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCC---------------CccC
Confidence 55566666664 33444431 346899999999999 577776 677899999999983 3344
Q ss_pred HhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchh
Q 009754 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (526)
Q Consensus 138 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (526)
.++. +..+++|+.|+++++. ++.+.... . ++|++|++++| .++.+ +. +..+++|++|++++| .++.+
T Consensus 77 ~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-----~-~~L~~L~L~~N-~l~~~-~~--l~~l~~L~~L~Ls~N-~i~~~ 143 (263)
T 1xeu_A 77 DLSP-LKDLTKLEELSVNRNR-LKNLNGIP-----S-ACLSRLFLDNN-ELRDT-DS--LIHLKNLEILSIRNN-KLKSI 143 (263)
T ss_dssp CCGG-GTTCSSCCEEECCSSC-CSCCTTCC-----C-SSCCEEECCSS-CCSBS-GG--GTTCTTCCEEECTTS-CCCBC
T ss_pred CChh-hccCCCCCEEECCCCc-cCCcCccc-----c-CcccEEEccCC-ccCCC-hh--hcCcccccEEECCCC-cCCCC
Confidence 4444 7789999999999986 44432222 2 89999999998 56655 32 889999999999998 56665
Q ss_pred ccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccc
Q 009754 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF 278 (526)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 278 (526)
+ .+..+++|+.|+++++ .+.++ . .+..+++|+.|+++++ .+...
T Consensus 144 ~-----------~l~~l~~L~~L~L~~N-~i~~~---~-~l~~l~~L~~L~l~~N-~~~~~ 187 (263)
T 1xeu_A 144 V-----------MLGFLSKLEVLDLHGN-EITNT---G-GLTRLKKVNWIDLTGQ-KCVNE 187 (263)
T ss_dssp G-----------GGGGCTTCCEEECTTS-CCCBC---T-TSTTCCCCCEEEEEEE-EEECC
T ss_pred h-----------HHccCCCCCEEECCCC-cCcch---H-HhccCCCCCEEeCCCC-cccCC
Confidence 4 3356899999999996 45555 2 2678999999999985 44443
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.98 E-value=1.3e-11 Score=129.14 Aligned_cols=199 Identities=15% Similarity=0.106 Sum_probs=120.3
Q ss_pred cCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccc------------cccccccCceecCCCccEE
Q 009754 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT------------LTSFCLENYTLEFPSLERV 90 (526)
Q Consensus 23 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~------------l~~~~~~~~~~~~~~L~~L 90 (526)
+...++|+.|+|+++ .++.+|..+++ +++|+.|++.+... .....+. ....+++|+.|
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~--------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L 414 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELES--------CKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAV 414 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHH
T ss_pred cccCccceeccCChh-hHHhhHHHHHH--------HHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccC
Confidence 466889999999995 78899988877 77888777654321 1111111 12345566666
Q ss_pred E-ecCCCCcccccc------Ccc--cCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCc
Q 009754 91 S-MTHCPNMKTFSH------GIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK 161 (526)
Q Consensus 91 ~-l~~c~~l~~l~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 161 (526)
+ ++.+ .+..++. .+. ....|+.|++++ +.+..++. +..+++|+.|+++++. ++
T Consensus 415 ~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~---------------n~l~~lp~-~~~l~~L~~L~Ls~N~-l~ 476 (567)
T 1dce_A 415 DPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAH---------------KDLTVLCH-LEQLLLVTHLDLSHNR-LR 476 (567)
T ss_dssp CGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTT---------------SCCSSCCC-GGGGTTCCEEECCSSC-CC
T ss_pred cchhhc-ccchhhhhhhhcccccccCccCceEEEecC---------------CCCCCCcC-ccccccCcEeecCccc-cc
Confidence 5 2221 1111110 000 012467777762 33334444 6667888888888775 44
Q ss_pred eeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchh--ccccccccccCCCCCCCCccce
Q 009754 162 EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV--LHLEEQNADKEHRGPLFPKLYG 239 (526)
Q Consensus 162 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~~l~~L~~ 239 (526)
.++... ..+++|++|++++| .++.+ |. ++.+++|++|++++| .++.+ |. .++.+++|+.
T Consensus 477 ~lp~~~----~~l~~L~~L~Ls~N-~l~~l-p~--l~~l~~L~~L~Ls~N-~l~~~~~p~----------~l~~l~~L~~ 537 (567)
T 1dce_A 477 ALPPAL----AALRCLEVLQASDN-ALENV-DG--VANLPRLQELLLCNN-RLQQSAAIQ----------PLVSCPRLVL 537 (567)
T ss_dssp CCCGGG----GGCTTCCEEECCSS-CCCCC-GG--GTTCSSCCEEECCSS-CCCSSSTTG----------GGGGCTTCCE
T ss_pred ccchhh----hcCCCCCEEECCCC-CCCCC-cc--cCCCCCCcEEECCCC-CCCCCCCcH----------HHhcCCCCCE
Confidence 444333 56788888888887 45555 32 788888888888887 55555 43 4567888888
Q ss_pred EecCCCccccccccCCC-ccccCCCcceEee
Q 009754 240 LRLIDLPKLKRFCNFTG-NIIELPELQHLTI 269 (526)
Q Consensus 240 L~l~~~~~l~~~~~~~~-~~~~~~~L~~L~l 269 (526)
|++++++ ++..+.... ....+|+|+.|++
T Consensus 538 L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 8888863 555544322 1334788888753
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.97 E-value=2.8e-09 Score=96.58 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=16.3
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC 211 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (526)
+++|++|+++++ .++.+ +...+..+++|++|++++|
T Consensus 51 l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 51 LTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCC
Confidence 445555555544 23333 2222344555555555554
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.94 E-value=8e-09 Score=93.51 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=29.0
Q ss_pred hhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 344 KAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
..+++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. .+..+++|++|+++++
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSC
T ss_pred cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHH-HhccCCCccEEEecCC
Confidence 34455555555544 23333332 344555555555553 34444332 2244555555555554
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.92 E-value=1e-08 Score=93.70 Aligned_cols=77 Identities=9% Similarity=0.110 Sum_probs=37.1
Q ss_pred cEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCCCc
Q 009754 178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGN 257 (526)
Q Consensus 178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 257 (526)
++++++++ .++.+ |. .-.+.+++|++++| .++.++... .+..+++|+.|+++++ .++.++. +.
T Consensus 14 ~~l~~s~n-~l~~i-P~---~~~~~~~~L~L~~N-~l~~~~~~~--------~~~~l~~L~~L~L~~N-~i~~i~~--~~ 76 (220)
T 2v70_A 14 TTVDCSNQ-KLNKI-PE---HIPQYTAELRLNNN-EFTVLEATG--------IFKKLPQLRKINFSNN-KITDIEE--GA 76 (220)
T ss_dssp TEEECCSS-CCSSC-CS---CCCTTCSEEECCSS-CCCEECCCC--------CGGGCTTCCEEECCSS-CCCEECT--TT
T ss_pred CEeEeCCC-CcccC-cc---CCCCCCCEEEcCCC-cCCccCchh--------hhccCCCCCEEECCCC-cCCEECH--HH
Confidence 45666555 34444 22 12334566666666 344332100 2345566666666654 2444321 11
Q ss_pred cccCCCcceEeeec
Q 009754 258 IIELPELQHLTIQN 271 (526)
Q Consensus 258 ~~~~~~L~~L~l~~ 271 (526)
+..+++|++|++++
T Consensus 77 ~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 77 FEGASGVNEILLTS 90 (220)
T ss_dssp TTTCTTCCEEECCS
T ss_pred hCCCCCCCEEECCC
Confidence 44556666666665
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=1.2e-11 Score=129.58 Aligned_cols=186 Identities=17% Similarity=0.109 Sum_probs=120.6
Q ss_pred ccccceeeeccccccccccccCceecCCCccEEEecCCC-------------CccccccCcccCCCeeeEE-eccccccc
Q 009754 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCP-------------NMKTFSHGILSTPKLHKVQ-VTEKEEGE 123 (526)
Q Consensus 58 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~-------------~l~~l~~~~~~~~~L~~L~-l~~~~~~~ 123 (526)
.++|+.|++++. .++.++.. .+.+++|+.|+++++. .....|..+..+++|+.|+ +.. ....
T Consensus 348 ~~~L~~L~Ls~n-~L~~Lp~~--i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~ 423 (567)
T 1dce_A 348 DEQLFRCELSVE-KSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLD 423 (567)
T ss_dssp TTTSSSCCCCHH-HHHHHHHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred CccceeccCChh-hHHhhHHH--HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccc
Confidence 678888888863 45655544 4568888888876553 2333444555677788877 331 0000
Q ss_pred ceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCC
Q 009754 124 LHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNL 203 (526)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L 203 (526)
.+....- .++.+..++ ...|+.|+++++. ++.++. . ..+++|++|++++| .++.+ |.. ++.+++|
T Consensus 424 ~L~~l~l-~~n~i~~l~-----~~~L~~L~Ls~n~-l~~lp~-~----~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L 488 (567)
T 1dce_A 424 DLRSKFL-LENSVLKME-----YADVRVLHLAHKD-LTVLCH-L----EQLLLVTHLDLSHN-RLRAL-PPA-LAALRCL 488 (567)
T ss_dssp HHHHHHH-HHHHHHHHH-----HTTCSEEECTTSC-CSSCCC-G----GGGTTCCEEECCSS-CCCCC-CGG-GGGCTTC
T ss_pred hhhhhhh-hcccccccC-----ccCceEEEecCCC-CCCCcC-c----cccccCcEeecCcc-ccccc-chh-hhcCCCC
Confidence 0000000 011122222 2468999999875 554432 3 56889999999998 46666 433 8899999
Q ss_pred CeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc--ccCCCccccCCCcceEeeecCCCCcccc
Q 009754 204 QWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF--CNFTGNIIELPELQHLTIQNCPDMETFI 279 (526)
Q Consensus 204 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 279 (526)
++|++++| .++.+| .++.+++|+.|+++++ .++.+ |.. +..+++|+.|+++++ .++..+
T Consensus 489 ~~L~Ls~N-~l~~lp-----------~l~~l~~L~~L~Ls~N-~l~~~~~p~~---l~~l~~L~~L~L~~N-~l~~~~ 549 (567)
T 1dce_A 489 EVLQASDN-ALENVD-----------GVANLPRLQELLLCNN-RLQQSAAIQP---LVSCPRLVLLNLQGN-SLCQEE 549 (567)
T ss_dssp CEEECCSS-CCCCCG-----------GGTTCSSCCEEECCSS-CCCSSSTTGG---GGGCTTCCEEECTTS-GGGGSS
T ss_pred CEEECCCC-CCCCCc-----------ccCCCCCCcEEECCCC-CCCCCCCcHH---HhcCCCCCEEEecCC-cCCCCc
Confidence 99999998 566665 3356899999999986 55655 333 778999999999995 576665
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.91 E-value=1.2e-08 Score=94.01 Aligned_cols=149 Identities=16% Similarity=0.049 Sum_probs=78.3
Q ss_pred CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCccccccccCC
Q 009754 176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT 255 (526)
Q Consensus 176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 255 (526)
+-+.++.++. .++.+ |. .-.++|++|++++| .+..++.. .+..+++|+.|+++++. ++.++..
T Consensus 20 s~~~v~c~~~-~l~~i-p~---~~~~~L~~L~Ls~n-~i~~~~~~---------~~~~l~~L~~L~L~~N~-l~~i~~~- 82 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASV-PA---GIPTNAQILYLHDN-QITKLEPG---------VFDSLINLKELYLGSNQ-LGALPVG- 82 (229)
T ss_dssp ETTEEECTTS-CCSSC-CS---CCCTTCSEEECCSS-CCCCCCTT---------TTTTCTTCCEEECCSSC-CCCCCTT-
T ss_pred eCCEeEccCC-CcCcc-CC---CCCCCCCEEEcCCC-ccCccCHH---------HhhCccCCcEEECCCCC-CCCcChh-
Confidence 3455666554 45555 32 23377888888777 34443210 34566777777777753 4444321
Q ss_pred CccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEe
Q 009754 256 GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHL 335 (526)
Q Consensus 256 ~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 335 (526)
.+..+++|+.|+++++ +++.+++..+ ..+++|+.|+++++ .++.+
T Consensus 83 -~~~~l~~L~~L~Ls~N-~l~~l~~~~~--------------------------------~~l~~L~~L~Ls~N-~l~~l 127 (229)
T 3e6j_A 83 -VFDSLTQLTVLDLGTN-QLTVLPSAVF--------------------------------DRLVHLKELFMCCN-KLTEL 127 (229)
T ss_dssp -TTTTCTTCCEEECCSS-CCCCCCTTTT--------------------------------TTCTTCCEEECCSS-CCCSC
T ss_pred -hcccCCCcCEEECCCC-cCCccChhHh--------------------------------CcchhhCeEeccCC-ccccc
Confidence 1346677777777763 4544432221 12356666666553 34444
Q ss_pred cccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccc
Q 009754 336 WKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC 381 (526)
Q Consensus 336 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 381 (526)
+... ..+++|+.|+++++ .++.++. .+..+++|+.|++++.
T Consensus 128 p~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 128 PRGI----ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CTTG----GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred Cccc----ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 4333 45556666666554 3444442 3445555555555553
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.89 E-value=1.7e-08 Score=92.29 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=16.1
Q ss_pred CCCCccceEecCCCccccccccCCCccccCCCcceEeeec
Q 009754 232 PLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQN 271 (526)
Q Consensus 232 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 271 (526)
..+++|+.|+++++ .+..+. ...+..+++|++|++++
T Consensus 53 ~~l~~L~~L~Ls~N-~i~~~~--~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 53 SPYKKLRRIDLSNN-QISELA--PDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTCTTCCEEECCSS-CCCEEC--TTTTTTCSSCCEEECCS
T ss_pred hCCCCCCEEECCCC-cCCCcC--HHHhhCCcCCCEEECCC
Confidence 34455555555553 223221 11133445555555554
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.88 E-value=9.6e-09 Score=93.91 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=43.7
Q ss_pred ceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCcccccc-CcccC
Q 009754 30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILST 108 (526)
Q Consensus 30 ~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~ 108 (526)
+.++++++ .+..+|..+. ..+++|++++. .++..........+++|+.|+++++. ++.++. .+..+
T Consensus 14 ~~l~~s~n-~l~~iP~~~~----------~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l 80 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP----------QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGA 80 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC----------TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred CEeEeCCC-CcccCccCCC----------CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCC
Confidence 47788774 6777776543 35667777763 35544332223457777777777763 444443 34445
Q ss_pred CCeeeEEec
Q 009754 109 PKLHKVQVT 117 (526)
Q Consensus 109 ~~L~~L~l~ 117 (526)
++|++|+++
T Consensus 81 ~~L~~L~Ls 89 (220)
T 2v70_A 81 SGVNEILLT 89 (220)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEECC
Confidence 555555555
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=1.3e-08 Score=99.12 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=23.2
Q ss_pred cceeEEeeccCceeecccccCC-cCCCceEEeccccccc
Q 009754 4 LLFYFFNIHTHAHTFAYFQVGI-PSSLVNLNVSRCDKIE 41 (526)
Q Consensus 4 ~~l~~l~~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~ 41 (526)
+.+..|.+++......+..+.. +++|++|||+++ .+.
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~ 62 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA-EIK 62 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE-EEC
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcc-eeE
Confidence 4556666665544333444444 788999999885 565
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.83 E-value=2.5e-08 Score=98.53 Aligned_cols=173 Identities=15% Similarity=0.159 Sum_probs=117.7
Q ss_pred cEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCC-CCCccceEecCCCccccccccCCC
Q 009754 178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGP-LFPKLYGLRLIDLPKLKRFCNFTG 256 (526)
Q Consensus 178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~ 256 (526)
+.++++++ .++.+ |. .-.+.+++|++++| .++.++.. ... .+++|+.|+++++ .+..++. .
T Consensus 21 ~~l~c~~~-~l~~i-P~---~~~~~l~~L~Ls~N-~l~~l~~~---------~~~~~l~~L~~L~L~~N-~i~~i~~--~ 82 (361)
T 2xot_A 21 NILSCSKQ-QLPNV-PQ---SLPSYTALLDLSHN-NLSRLRAE---------WTPTRLTNLHSLLLSHN-HLNFISS--E 82 (361)
T ss_dssp TEEECCSS-CCSSC-CS---SCCTTCSEEECCSS-CCCEECTT---------SSSSCCTTCCEEECCSS-CCCEECT--T
T ss_pred CEEEeCCC-CcCcc-Cc---cCCCCCCEEECCCC-CCCccChh---------hhhhcccccCEEECCCC-cCCccCh--h
Confidence 56777765 56665 32 22356899999988 56665431 233 6889999999886 5566532 2
Q ss_pred ccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCCceEec
Q 009754 257 NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW 336 (526)
Q Consensus 257 ~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 336 (526)
.+..+++|++|+++++ +++.+++..+ ..+++|+.|+++++ .++.+.
T Consensus 83 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N-~i~~~~ 128 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSN-HLHTLDEFLF--------------------------------SDLQALEVLLLYNN-HIVVVD 128 (361)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTT--------------------------------TTCTTCCEEECCSS-CCCEEC
T ss_pred hccCCCCCCEEECCCC-cCCcCCHHHh--------------------------------CCCcCCCEEECCCC-cccEEC
Confidence 2668899999999984 5666554332 24589999999885 466665
Q ss_pred ccCChhhhhhcccceeEeccCcCccccCCCC----CCCCCCCEEeeccccCccccccchhhhhccC--CceEEEeccc
Q 009754 337 KENDESNKAFANLESLEISECSKLQKLVPPS----WHLENLEALEVSKCHGLINLLTFSTSESLVN--LGRMMIADCK 408 (526)
Q Consensus 337 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~--L~~L~i~~c~ 408 (526)
...+ ..+++|+.|+++++ .++.+|... ..+++|+.|+++++ .++.++... +..+++ ++.|++.+++
T Consensus 129 ~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 129 RNAF---EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTD-LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTTT---TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHH-HHHSCHHHHTTEECCSSC
T ss_pred HHHh---CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHH-hhhccHhhcceEEecCCC
Confidence 5444 77889999999886 577776544 46789999999984 677776543 355665 4778887754
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.83 E-value=2e-08 Score=99.27 Aligned_cols=176 Identities=20% Similarity=0.115 Sum_probs=119.6
Q ss_pred cEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHh-cCCCCCeeeeccccccchhccccccccccC
Q 009754 150 EYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLR-CLNNLQWLEVRNCDSIEEVLHLEEQNADKE 228 (526)
Q Consensus 150 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 228 (526)
+.+++++.. ++.++. .....++.|+++++ .++.+++. .+. .+++|++|++++| .++.++..
T Consensus 21 ~~l~c~~~~-l~~iP~------~~~~~l~~L~Ls~N-~l~~l~~~-~~~~~l~~L~~L~L~~N-~i~~i~~~-------- 82 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQ------SLPSYTALLDLSHN-NLSRLRAE-WTPTRLTNLHSLLLSHN-HLNFISSE-------- 82 (361)
T ss_dssp TEEECCSSC-CSSCCS------SCCTTCSEEECCSS-CCCEECTT-SSSSCCTTCCEEECCSS-CCCEECTT--------
T ss_pred CEEEeCCCC-cCccCc------cCCCCCCEEECCCC-CCCccChh-hhhhcccccCEEECCCC-cCCccChh--------
Confidence 566666543 444332 23467999999998 56666443 355 8999999999998 56665421
Q ss_pred CCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhcccc
Q 009754 229 HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV 308 (526)
Q Consensus 229 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~ 308 (526)
.+..+++|+.|+++++ .++.++. ..+..+++|+.|+++++ ++....+..+
T Consensus 83 -~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L~~N-~i~~~~~~~~------------------------- 132 (361)
T 2xot_A 83 -AFVPVPNLRYLDLSSN-HLHTLDE--FLFSDLQALEVLLLYNN-HIVVVDRNAF------------------------- 132 (361)
T ss_dssp -TTTTCTTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCCEECTTTT-------------------------
T ss_pred -hccCCCCCCEEECCCC-cCCcCCH--HHhCCCcCCCEEECCCC-cccEECHHHh-------------------------
Confidence 4567899999999996 4666633 22668899999999994 6666544433
Q ss_pred ccccccCCCCCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCC--CCEEeecccc
Q 009754 309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLEN--LEALEVSKCH 382 (526)
Q Consensus 309 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~--L~~L~l~~c~ 382 (526)
..+++|+.|+++++ .++.++...+.....+++|+.|+++++ .++.+|. .+..+++ ++.|++.+++
T Consensus 133 -------~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 133 -------EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -------TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred -------CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 34589999999985 577766554322246899999999986 4666652 3445555 4788888753
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.83 E-value=1.7e-08 Score=92.16 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCc
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
+++|++|+++++ .++.+.+ ..+..+++|++|++++| .++.++.. .+..+++|+.|++++++
T Consensus 103 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDN-KLQTIAKG---------TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT---------TTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCC-cCCEECHH---------HHhCCCCCCEEEeCCCC
Confidence 455566666555 2333322 22556666666666665 34433310 23445666666666543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=4.4e-09 Score=91.70 Aligned_cols=136 Identities=20% Similarity=0.263 Sum_probs=84.0
Q ss_pred CCcCCCceEEeccccccc--EeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccc-
Q 009754 24 GIPSSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT- 100 (526)
Q Consensus 24 ~~l~~L~~L~L~~c~~l~--~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~- 100 (526)
...++|++|++++| .+. .+|..+.. +++|++|++.++. ++.. .....+++|+.|++++|. ++.
T Consensus 21 ~~~~~L~~L~l~~n-~l~~~~i~~~~~~--------l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~ 86 (168)
T 2ell_A 21 RTPAAVRELVLDNC-KSNDGKIEGLTAE--------FVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG 86 (168)
T ss_dssp SCTTSCSEEECCSC-BCBTTBCSSCCGG--------GGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC
T ss_pred CCcccCCEEECCCC-CCChhhHHHHHHh--------CCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH
Confidence 44578888888886 465 66665554 7777777777654 5444 123456777777777664 222
Q ss_pred cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec--cCCCCCcCCCCCcc
Q 009754 101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW--HGQALPVSFFNNLA 178 (526)
Q Consensus 101 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~l~~L~ 178 (526)
+|. .+..+++|+.|+++++. ++.+. ... ..+++|+
T Consensus 87 ~~~--------------------------------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~l----~~l~~L~ 123 (168)
T 2ell_A 87 LDM--------------------------------------LAEKLPNLTHLNLSGNK-LKDISTLEPL----KKLECLK 123 (168)
T ss_dssp CCH--------------------------------------HHHHCTTCCEEECBSSS-CCSSGGGGGG----SSCSCCC
T ss_pred HHH--------------------------------------HHhhCCCCCEEeccCCc-cCcchhHHHH----hcCCCCC
Confidence 221 22235666666666654 33322 111 4578888
Q ss_pred EEEEecCCCcccCCC--hHHHhcCCCCCeeeeccccccchhc
Q 009754 179 RLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVRNCDSIEEVL 218 (526)
Q Consensus 179 ~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~~~~l~~~~ 218 (526)
+|++++|. ++..++ ...+..+++|++|++++| ...+++
T Consensus 124 ~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 124 SLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp EEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred EEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 88888874 555533 135888999999999988 455544
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.80 E-value=4.4e-08 Score=90.06 Aligned_cols=150 Identities=16% Similarity=0.093 Sum_probs=103.4
Q ss_pred ccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCcccc-CCCCCCCCCCCEEeeccccCccccccchhhhhccCC
Q 009754 321 LRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNL 399 (526)
Q Consensus 321 L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 399 (526)
-+.++.++ ..++.++... .++|+.|+++++. ++.+ +..+..+++|++|+++++ .+..++.. .+..+++|
T Consensus 21 ~~~v~c~~-~~l~~ip~~~------~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~-~~~~l~~L 90 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGI------PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVG-VFDSLTQL 90 (229)
T ss_dssp TTEEECTT-SCCSSCCSCC------CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTC
T ss_pred CCEeEccC-CCcCccCCCC------CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChh-hcccCCCc
Confidence 34566655 3456665432 3788888888864 4444 556778888888888885 56666653 34678888
Q ss_pred ceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceeccC-CCCCC
Q 009754 400 GRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFSQ-GVLDT 478 (526)
Q Consensus 400 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~ 478 (526)
++|+++++ .++.++. + ....+++|+.|+++++ .++.+|..... +++|++|+++++ +++.+|. .+..+
T Consensus 91 ~~L~Ls~N-~l~~l~~---~----~~~~l~~L~~L~Ls~N-~l~~lp~~~~~--l~~L~~L~L~~N-~l~~~~~~~~~~l 158 (229)
T 3e6j_A 91 TVLDLGTN-QLTVLPS---A----VFDRLVHLKELFMCCN-KLTELPRGIER--LTHLTHLALDQN-QLKSIPHGAFDRL 158 (229)
T ss_dssp CEEECCSS-CCCCCCT---T----TTTTCTTCCEEECCSS-CCCSCCTTGGG--CTTCSEEECCSS-CCCCCCTTTTTTC
T ss_pred CEEECCCC-cCCccCh---h----HhCcchhhCeEeccCC-cccccCccccc--CCCCCEEECCCC-cCCccCHHHHhCC
Confidence 88888886 5655543 1 1134788888888886 67778776655 889999999874 6777764 35567
Q ss_pred CCcceEEeeccCCC
Q 009754 479 PMLNKVNVTEEEKD 492 (526)
Q Consensus 479 ~~L~~l~l~~~~~~ 492 (526)
++|+.+++.++.+.
T Consensus 159 ~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 159 SSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCCEEECTTSCBC
T ss_pred CCCCEEEeeCCCcc
Confidence 88999988766654
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=6.7e-08 Score=94.15 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccc-eeecccccccceecCC
Q 009754 370 LENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELR-YLELYCLPSLTSFCLG 448 (526)
Q Consensus 370 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~ 448 (526)
+++|+.+++.++ .++.++..+ +.++++|+++++.+ +++.+.. + ....+++|+ .+.+.+ +++.++..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~--ni~~I~~---~----aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPH--NLKTIGQ---R----VFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCT--TCCEECT---T----TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCc--ccceehH---H----HhhCChhccEEEEEcc--cceEEchh
Confidence 567777777763 466666543 35677777777765 2555544 1 112345666 666655 56666655
Q ss_pred CccCCCCCccEEEEcCCCCceeccC-CCCCCCCcceEE
Q 009754 449 NYALEFPSLKQVVVRQCPKMKIFSQ-GVLDTPMLNKVN 485 (526)
Q Consensus 449 ~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~ 485 (526)
... .|++|+++++.+ .+++.++. .+..+++|+.+.
T Consensus 292 aF~-~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFM-GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTT-TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhh-CCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 443 577777777754 46666664 344566777664
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.72 E-value=2e-08 Score=87.54 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=88.7
Q ss_pred ccceeEEeeccCcee--ecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCc
Q 009754 3 FLLFYFFNIHTHAHT--FAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY 80 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~--~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (526)
.+.++.|+++.+... .....+..+++|++|++++| .+..+ ..+.. +++|++|+++++. ++..... .
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~--------l~~L~~L~Ls~N~-l~~~~~~-~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPK--------LPKLKKLELSENR-IFGGLDM-L 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCC--------CSSCCEEEEESCC-CCSCCCH-H
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhcc--------CCCCCEEECcCCc-CchHHHH-H
Confidence 578999999988765 33335688999999999997 57777 44554 8999999999865 4442222 1
Q ss_pred eecCCCccEEEecCCCCccccc--cCcccCCCeeeEEecccccccceeeeccccchhhHHhhh----hhcCCCCCcEEEe
Q 009754 81 TLEFPSLERVSMTHCPNMKTFS--HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE----EMIGFRDMEYLQL 154 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~L~~L~l 154 (526)
...+++|+.|++++| .++.++ ..+..+++|++|++++ +.+..++. .+..+++|+.|++
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~---------------N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFN---------------CEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCS---------------SGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeC---------------CcCcchHHHHHHHHHhCccCcEecC
Confidence 335999999999999 566654 4556677777777772 23333332 4455666666666
Q ss_pred ecCC
Q 009754 155 SYFP 158 (526)
Q Consensus 155 ~~~~ 158 (526)
+++.
T Consensus 155 ~~n~ 158 (168)
T 2ell_A 155 YDRE 158 (168)
T ss_dssp EETT
T ss_pred CCCC
Confidence 6654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=7.8e-09 Score=88.14 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=74.3
Q ss_pred CcCCCceEEeccccccc--EeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccc
Q 009754 25 IPSSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (526)
Q Consensus 25 ~l~~L~~L~L~~c~~l~--~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 102 (526)
..++|++|++++| .+. .+|..+.. +++|++|+++++ .++.. .....+++|+.|++++|. ++.
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~-- 78 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGLTDE--------FEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSG-- 78 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSCCTT--------CTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCS--
T ss_pred CCccCeEEEccCC-cCChhHHHHHHhh--------cCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccc--
Confidence 3567777777776 454 55654444 566666666654 33333 112345555555555553 221
Q ss_pred cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceec--cCCCCCcCCCCCccEE
Q 009754 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIW--HGQALPVSFFNNLARL 180 (526)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~l~~L~~L 180 (526)
.++..+..+++|+.|+++++. ++... ... ..+++|++|
T Consensus 79 -----------------------------------~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~----~~l~~L~~L 118 (149)
T 2je0_A 79 -----------------------------------GLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL----KKLENLKSL 118 (149)
T ss_dssp -----------------------------------CTHHHHHHCTTCCEEECTTSC-CCSHHHHGGG----GGCTTCCEE
T ss_pred -----------------------------------hHHHHhhhCCCCCEEECCCCc-CCChHHHHHH----hhCCCCCEE
Confidence 022233345667777776665 33321 222 457888888
Q ss_pred EEecCCCcccCCC--hHHHhcCCCCCeeeecc
Q 009754 181 VVDDCTNMSSAIP--ANLLRCLNNLQWLEVRN 210 (526)
Q Consensus 181 ~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~ 210 (526)
++++| .++..++ ...+..+++|++|++++
T Consensus 119 ~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 88887 4555544 14588999999998863
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.68 E-value=2.1e-08 Score=85.39 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=76.3
Q ss_pred ccceeEEeeccCcee--ecccccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCc
Q 009754 3 FLLFYFFNIHTHAHT--FAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY 80 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~--~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (526)
++.++.++++.+... .....++.+++|++|++++| .+..+ ..+.+ +++|++|+++++. +++..+. .
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~--------l~~L~~L~Ls~n~-i~~~~~~-~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPK--------LNKLKKLELSDNR-VSGGLEV-L 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCC--------CTTCCEEECCSSC-CCSCTHH-H
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhc--------CCCCCEEECCCCc-ccchHHH-H
Confidence 578999999998766 33446689999999999997 67777 44554 8999999999864 4442222 1
Q ss_pred eecCCCccEEEecCCCCccccc--cCcccCCCeeeEEec
Q 009754 81 TLEFPSLERVSMTHCPNMKTFS--HGILSTPKLHKVQVT 117 (526)
Q Consensus 81 ~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~ 117 (526)
...+++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECT
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCc
Confidence 3358999999999985 56543 556677888888887
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.62 E-value=2.3e-08 Score=87.84 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=78.6
Q ss_pred cccCCcCCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccc
Q 009754 21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT 100 (526)
Q Consensus 21 ~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 100 (526)
+.+..+++|++|+++++ .+..+|. +.. ..++|++|+++++ .++++ .....+++|+.|++++|. ++.
T Consensus 13 ~~~~~~~~L~~L~l~~n-~l~~i~~-~~~-------~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~ 78 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY-KIPVIEN-LGA-------TLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICR 78 (176)
T ss_dssp CEEECTTSCEEEECTTS-CCCSCCC-GGG-------GTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCE
T ss_pred HhcCCcCCceEEEeeCC-CCchhHH-hhh-------cCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccc
Confidence 44556788888888886 6666643 222 1347777777764 34443 113456677777777663 444
Q ss_pred cccCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceecc--CCCCCcCCCCCcc
Q 009754 101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH--GQALPVSFFNNLA 178 (526)
Q Consensus 101 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~l~~L~ 178 (526)
+|.+. +..+++|+.|+++++. ++.++. .. ..+++|+
T Consensus 79 ~~~~~-------------------------------------~~~l~~L~~L~L~~N~-i~~~~~~~~l----~~l~~L~ 116 (176)
T 1a9n_A 79 IGEGL-------------------------------------DQALPDLTELILTNNS-LVELGDLDPL----ASLKSLT 116 (176)
T ss_dssp ECSCH-------------------------------------HHHCTTCCEEECCSCC-CCCGGGGGGG----GGCTTCC
T ss_pred cCcch-------------------------------------hhcCCCCCEEECCCCc-CCcchhhHhh----hcCCCCC
Confidence 44333 1234555555555543 222221 11 3467777
Q ss_pred EEEEecCCCcccCCCh--HHHhcCCCCCeeeeccccc
Q 009754 179 RLVVDDCTNMSSAIPA--NLLRCLNNLQWLEVRNCDS 213 (526)
Q Consensus 179 ~L~l~~c~~l~~~~~~--~~l~~l~~L~~L~l~~~~~ 213 (526)
+|++++|. +..++.. ..+..+++|++|+++++..
T Consensus 117 ~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 117 YLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88877774 3444221 1478899999999988843
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=5.6e-06 Score=82.56 Aligned_cols=191 Identities=14% Similarity=0.166 Sum_probs=94.3
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCceecCCCccEEEecCCCCccccccCc-
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI- 105 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~- 105 (526)
..++.+.+-+ .+..|+..... . .+|+.+.+.+ +++.+....... .+|+.+.+.+ .++.+..+.
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~-------~-~~L~~i~l~~--~i~~I~~~aF~~--~~L~~i~lp~--~l~~I~~~aF 176 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFR-------N-SQIAKVVLNE--GLKSIGDMAFFN--STVQEIVFPS--TLEQLKEDIF 176 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTT-------T-CCCSEEECCT--TCCEECTTTTTT--CCCCEEECCT--TCCEECSSTT
T ss_pred CCccEEEECC--ccCEehHhhcc-------c-CCccEEEeCC--CccEECHHhcCC--CCceEEEeCC--CccEehHHHh
Confidence 5555555544 35555442211 1 2466666542 244444333221 3566666654 345544332
Q ss_pred ccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecC
Q 009754 106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC 185 (526)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 185 (526)
..+.+|+.+.+. .+.+..++.....+++|+.+.+... ++.+.... + ..+++|+.+.+..
T Consensus 177 ~~c~~L~~l~l~---------------~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~a-F--~~~~~L~~l~l~~- 235 (401)
T 4fdw_A 177 YYCYNLKKADLS---------------KTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQA-F--LKTSQLKTIEIPE- 235 (401)
T ss_dssp TTCTTCCEEECT---------------TSCCSEECTTTTTTCCCSEEECCTT--CCEECTTT-T--TTCTTCCCEECCT-
T ss_pred hCcccCCeeecC---------------CCcceEechhhEeecccCEEEeCCc--hheehhhH-h--hCCCCCCEEecCC-
Confidence 335667777765 2233334433334567777777532 44333222 1 2456777777765
Q ss_pred CCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcc----ccccccCCCccccC
Q 009754 186 TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK----LKRFCNFTGNIIEL 261 (526)
Q Consensus 186 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----l~~~~~~~~~~~~~ 261 (526)
+++.+ +...+.. .+|+.+.+.. .++.++.- ....+++|+.+.+.+... ...+ ....+..|
T Consensus 236 -~l~~I-~~~aF~~-~~L~~i~lp~--~i~~I~~~---------aF~~c~~L~~l~l~~~~~~~~~~~~I--~~~aF~~c 299 (401)
T 4fdw_A 236 -NVSTI-GQEAFRE-SGITTVKLPN--GVTNIASR---------AFYYCPELAEVTTYGSTFNDDPEAMI--HPYCLEGC 299 (401)
T ss_dssp -TCCEE-CTTTTTT-CCCSEEEEET--TCCEECTT---------TTTTCTTCCEEEEESSCCCCCTTCEE--CTTTTTTC
T ss_pred -CccCc-ccccccc-CCccEEEeCC--CccEEChh---------HhhCCCCCCEEEeCCccccCCcccEE--CHHHhhCC
Confidence 24444 3333444 5777777743 34444321 445667777777765321 0112 12225566
Q ss_pred CCcceEeee
Q 009754 262 PELQHLTIQ 270 (526)
Q Consensus 262 ~~L~~L~l~ 270 (526)
++|+.+.+.
T Consensus 300 ~~L~~l~l~ 308 (401)
T 4fdw_A 300 PKLARFEIP 308 (401)
T ss_dssp TTCCEECCC
T ss_pred ccCCeEEeC
Confidence 666666665
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=3.8e-06 Score=83.80 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeecc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSK 380 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~ 380 (526)
+++|+.+.+.+ +++.++...| ..+++|+.+.+.. .++.+. ..+..+ +|+.+++.+
T Consensus 299 c~~L~~l~l~~--~i~~I~~~aF---~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 299 CPKLARFEIPE--SIRILGQGLL---GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp CTTCCEECCCT--TCCEECTTTT---TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC
T ss_pred CccCCeEEeCC--ceEEEhhhhh---cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC
Confidence 34555555542 3444444433 4445555555533 233332 223334 555555544
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.55 E-value=5.7e-07 Score=80.09 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCCCCCCCCCCEEeecccc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH 382 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 382 (526)
+++|+.|+++++ .++.++...+ ..+++|+.|+++++..-...|..+..+++|++|++++++
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNKMF---LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSS---TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cccCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 366667776663 4555554433 566777777777764333335566677777777777753
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=1.5e-07 Score=82.61 Aligned_cols=127 Identities=9% Similarity=0.107 Sum_probs=88.9
Q ss_pred ccceeEEeeccCceeecccccCCcC-CCceEEecccccccEeccccccccccccccccccceeeeccccccccccccCce
Q 009754 3 FLLFYFFNIHTHAHTFAYFQVGIPS-SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYT 81 (526)
Q Consensus 3 ~~~l~~l~~~~~~~~~~~~~~~~l~-~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (526)
+++|+.|+++++... .++.+..+. +|++|+++++ .+..+ ..+.. +++|++|+++++ .++.++... .
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~--------l~~L~~L~Ls~N-~l~~~~~~~-~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN-EIRKL-DGFPL--------LRRLKTLLVNNN-RICRIGEGL-D 84 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSS-CCCEE-CCCCC--------CSSCCEEECCSS-CCCEECSCH-H
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCC-CCCcc-ccccc--------CCCCCEEECCCC-cccccCcch-h
Confidence 567899999988655 456677666 9999999996 78887 44555 899999999985 466654432 2
Q ss_pred ecCCCccEEEecCCCCcccccc--CcccCCCeeeEEecccccccceeeeccccchhhHHhhhh----hcCCCCCcEEEee
Q 009754 82 LEFPSLERVSMTHCPNMKTFSH--GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE----MIGFRDMEYLQLS 155 (526)
Q Consensus 82 ~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~L~~L~l~ 155 (526)
..+++|+.|+++++. ++.+|. .+..+++|++|++++ +.+..++.. +..+++|+.|+++
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~---------------N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILR---------------NPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCS---------------SGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecC---------------CCCCCcHhHHHHHHHHCCccceeCCC
Confidence 568999999999984 576665 556677788887772 233333332 4455666666666
Q ss_pred cCC
Q 009754 156 YFP 158 (526)
Q Consensus 156 ~~~ 158 (526)
++.
T Consensus 149 ~n~ 151 (176)
T 1a9n_A 149 KVK 151 (176)
T ss_dssp ECC
T ss_pred cCC
Confidence 554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.52 E-value=3.9e-07 Score=81.23 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=27.8
Q ss_pred hhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccc
Q 009754 139 CYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC 211 (526)
Q Consensus 139 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (526)
++..+..+++|+.|+++++. ++.+.... ...+++|++|+++++ .++.+++ ..+..+++|++|++++|
T Consensus 46 ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~---f~~l~~L~~L~Ls~N-~l~~i~~-~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 46 VPKELSNYKHLTLIDLSNNR-ISTLSNQS---FSNMTQLLTLILSYN-RLRCIPP-RTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCGGGGGCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSS
T ss_pred hHHHhhcccCCCEEECCCCc-CCEeCHhH---ccCCCCCCEEECCCC-ccCEeCH-HHhCCCCCCCEEECCCC
Confidence 33344445555555555543 22211110 023445555555544 2333322 12444555555555544
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.50 E-value=1.2e-06 Score=77.98 Aligned_cols=110 Identities=10% Similarity=0.042 Sum_probs=52.6
Q ss_pred CCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCcc
Q 009754 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYA 451 (526)
Q Consensus 372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 451 (526)
+|++|+++++ .++.++....+..+++|++|+++++ .++.+.. .....+++|++|+++++ .++.++.....
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 99 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEP-------NAFEGASHIQELQLGEN-KIKEISNKMFL 99 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCT-------TTTTTCTTCCEEECCSC-CCCEECSSSST
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCH-------hHcCCcccCCEEECCCC-cCCccCHHHhc
Confidence 4555555543 3444433222344555555555543 2332211 01123455555555554 34444443221
Q ss_pred CCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754 452 LEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 452 ~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
.+++|++|+++++.--...|..+..+++|+.+++.++.+.
T Consensus 100 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 100 -GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 2566677776664333333555556667777777555554
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.46 E-value=1.3e-07 Score=102.11 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=86.9
Q ss_pred CCCceEEecccccccEeccccccccccccccccccceeeecccc----ccccccccCceecCCCccEEEecCCCCccccc
Q 009754 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLP----TLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 102 (526)
+.++.|+|.+. .+..++..... ..+|..+.+.... .+. ... .....+++|+.|+++++. +..+|
T Consensus 173 ~~~~~l~L~~n-~~~~~~~~~l~--------~l~Ls~~~i~~~~~~~n~~~-~~~-~~~~~l~~L~~L~Ls~n~-l~~l~ 240 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDEANQALLQ--------HKKLSQYSIDEDDDIENRMV-MPK-DSKYDDQLWHALDLSNLQ-IFNIS 240 (727)
T ss_dssp ------------------------------------------------------------CCCCCCEEECTTSC-CSCCC
T ss_pred CccceEEeeCC-CCCcchhhHhh--------cCccCcccccCcccccccee-cCh-hhhccCCCCcEEECCCCC-CCCCC
Confidence 55777888774 56665543322 3334444433321 111 111 123468899999999985 66888
Q ss_pred cCcccCCCeeeEEecccccccceeeeccccchhhHHhhhhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEE
Q 009754 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (526)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l 182 (526)
..+..+++|++|+++ .+.+..++..+..+++|+.|+|+++. ++.++... ..+++|++|++
T Consensus 241 ~~~~~l~~L~~L~Ls---------------~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L 300 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLN---------------GNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAEL----GSCFQLKYFYF 300 (727)
T ss_dssp GGGGGCCSCSCCBCT---------------TSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSG----GGGTTCSEEEC
T ss_pred hhhcCCCCCCEEEee---------------CCcCcccChhhhCCCCCCEEeCcCCc-CCccChhh----cCCCCCCEEEC
Confidence 888889999999998 34445677778889999999999887 55444444 56889999999
Q ss_pred ecCCCcccCCChHHHhcCCCCCeeeeccccccchh
Q 009754 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (526)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (526)
++| .++.++. . ++.+++|++|+|++|.....+
T Consensus 301 ~~N-~l~~lp~-~-~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 301 FDN-MVTTLPW-E-FGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CSS-CCCCCCS-S-TTSCTTCCCEECTTSCCCSHH
T ss_pred CCC-CCCccCh-h-hhcCCCccEEeCCCCccCCCC
Confidence 998 5666643 3 889999999999998544333
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.44 E-value=2.2e-05 Score=78.24 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=15.9
Q ss_pred CCCCCCCEEeeccccCccccccchhhhhccCCceEEEe
Q 009754 368 WHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA 405 (526)
Q Consensus 368 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 405 (526)
..+.+|+.+.+.. +++.++..+ ..++.+|+.+++.
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp 328 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLP 328 (394)
T ss_dssp TTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCC
T ss_pred ccccccccccccc--ccceechhh-hcCCCCCCEEEeC
Confidence 3445555555543 244443322 2344555555553
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.43 E-value=1.5e-06 Score=77.40 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC 381 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 381 (526)
+++|+.|+++++ .++.++...+ ..+++|+.|+++++ .++.++. .+..+++|+.|++++.
T Consensus 77 l~~L~~L~Ls~N-~l~~i~~~~f---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 77 MTQLLTLILSYN-RLRCIPPRTF---DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSS-CCCBCCTTTT---TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCC-ccCEeCHHHh---CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 356666666553 3444443333 45566666666664 3444544 3455666666666653
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.42 E-value=2.9e-07 Score=99.35 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccccccccceeecccccccc
Q 009754 364 VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLT 443 (526)
Q Consensus 364 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 443 (526)
+..+..+++|+.|+++++ .+..++.. +..+++|++|+++++ .++.++. .+..+++|++|+++++ .++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~lp~--------~~~~l~~L~~L~Ls~N-~l~ 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISAN--IFKYDFLTRLYLNGN-SLTELPA--------EIKNLSNLRVLDLSHN-RLT 283 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGG--GGGCCSCSCCBCTTS-CCSCCCG--------GGGGGTTCCEEECTTS-CCS
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChh--hcCCCCCCEEEeeCC-cCcccCh--------hhhCCCCCCEEeCcCC-cCC
Confidence 334445555555555553 33444432 234555555555554 2333322 1123455555555554 344
Q ss_pred eecCCCccCCCCCccEEEEcCCCCceeccCCCCCCCCcceEEeeccCCC
Q 009754 444 SFCLGNYALEFPSLKQVVVRQCPKMKIFSQGVLDTPMLNKVNVTEEEKD 492 (526)
Q Consensus 444 ~~~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~l~~~~~~ 492 (526)
.+|..... +++|++|++.+| .++.+|..+..+++|+.|++++|++.
T Consensus 284 ~lp~~~~~--l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 SLPAELGS--CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCSSGGG--GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred ccChhhcC--CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 55544433 556666666554 44555555555556666666555543
No 136
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=1.3e-07 Score=81.71 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=42.4
Q ss_pred CCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccccccc--cccccceeecccccccceecCCC
Q 009754 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCN--VFKELRYLELYCLPSLTSFCLGN 449 (526)
Q Consensus 372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~ 449 (526)
+|++|++++|. +++.....+ ..+++|++|++++|..+++... ...... ..++|++|++++|+++++-....
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 45555555553 444333222 3455555555555554443321 000000 12345566666665555443332
Q ss_pred ccCCCCCccEEEEcCCCCcee
Q 009754 450 YALEFPSLKQVVVRQCPKMKI 470 (526)
Q Consensus 450 ~~~~~~~L~~L~l~~C~~l~~ 470 (526)
.+ .+++|++|++++|++++.
T Consensus 135 L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GG-GCTTCCEEEEESCTTCCC
T ss_pred Hh-cCCCCCEEECCCCCCCCc
Confidence 22 256666666666666553
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.35 E-value=3.5e-06 Score=73.75 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=27.9
Q ss_pred hhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 344 KAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
..+++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. ....+++|++|+++++
T Consensus 73 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 73 DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-HhcCCcccCEEEecCC
Confidence 34445555555543 23333332 344555555555553 34444432 2234455555555544
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=6.5e-05 Score=74.80 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=40.6
Q ss_pred hhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecccCcceeeccCCcccc
Q 009754 344 KAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEA 422 (526)
Q Consensus 344 ~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 422 (526)
..+.+|+.+.+.+ .++.+.. .+..+.+|+.+++.. .++.++..++ .++.+|+.+.+.. .++.+.. +
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~---~--- 360 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPL--SLRKIGA---N--- 360 (394)
T ss_dssp TTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECT---T---
T ss_pred ccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECc--cccEehH---H---
Confidence 4455666666643 2444432 345556666666643 3555544332 4566666666643 2444433 1
Q ss_pred cccccccccceeecc
Q 009754 423 KDCNVFKELRYLELY 437 (526)
Q Consensus 423 ~~~~~~~~L~~L~l~ 437 (526)
....+++|+.+.+.
T Consensus 361 -aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 361 -AFQGCINLKKVELP 374 (394)
T ss_dssp -TBTTCTTCCEEEEE
T ss_pred -HhhCCCCCCEEEEC
Confidence 11234566666664
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.25 E-value=1.4e-08 Score=91.23 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=44.1
Q ss_pred CCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccc
Q 009754 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (526)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (526)
.+++|+.|+++++. ++.++... ..+++|++|++++| .++.+ +. +..+++|++|++++| .+..++.+.
T Consensus 68 ~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~~L~L~~N-~l~~l-~~--~~~l~~L~~L~l~~N-~i~~~~~~~--- 134 (198)
T 1ds9_A 68 GMENLRILSLGRNL-IKKIENLD----AVADTLEELWISYN-QIASL-SG--IEKLVNLRVLYMSNN-KITNWGEID--- 134 (198)
T ss_dssp HHTTCCEEEEEEEE-ECSCSSHH----HHHHHCSEEEEEEE-ECCCH-HH--HHHHHHSSEEEESEE-ECCCHHHHH---
T ss_pred cCCCCCEEECCCCC-cccccchh----hcCCcCCEEECcCC-cCCcC-Cc--cccCCCCCEEECCCC-cCCchhHHH---
Confidence 44555555555543 22211111 23466777777766 34443 22 566677777777766 444433211
Q ss_pred cccCCCCCCCCccceEecCCCc
Q 009754 225 ADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
.+..+++|+.|++++++
T Consensus 135 -----~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 135 -----KLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -----HHTTTTTCSEEEECSCH
T ss_pred -----HHhcCCCCCEEEecCCc
Confidence 23456777777777653
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.23 E-value=9e-06 Score=71.09 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeecccc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCH 382 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 382 (526)
+++|+.|+++++ .++.++...+ ..+++|+.|+++++ .++.+|.. +..+++|++|++++++
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNGVF---DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCC-CccccCHHHh---hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 356666666653 3444444332 55677777777776 45666654 3667888888888764
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.23 E-value=1.8e-08 Score=90.42 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=34.2
Q ss_pred CCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccc
Q 009754 146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS 213 (526)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (526)
+++|+.|+++++. ++.++ .. ..+++|++|++++|. ++.++....+..+++|++|++++|..
T Consensus 92 ~~~L~~L~L~~N~-l~~l~-~~----~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASLS-GI----EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHCSEEEEEEEE-CCCHH-HH----HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCcCCEEECcCCc-CCcCC-cc----ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 3455555555543 33221 11 345677777777763 44332223467788888888887743
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=5e-07 Score=78.06 Aligned_cols=88 Identities=8% Similarity=0.218 Sum_probs=38.2
Q ss_pred CccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCC----CCCCCEEeeccccCccccccchhhh
Q 009754 320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWH----LENLEALEVSKCHGLINLLTFSTSE 394 (526)
Q Consensus 320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (526)
.|+.|++++|. +++.... ....+++|+.|++++|..+++-. ..+.. .++|++|++++|+++++.....+ .
T Consensus 62 ~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 56666666653 3332221 12444555555555554443210 01111 12455555555555554433222 2
Q ss_pred hccCCceEEEecccCcce
Q 009754 395 SLVNLGRMMIADCKMIEQ 412 (526)
Q Consensus 395 ~l~~L~~L~i~~c~~l~~ 412 (526)
.+++|++|++++|+++++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 345555555555554443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.94 E-value=2e-05 Score=68.37 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (526)
+++|++|+++++ .++.+ +...+..+++|++|++++| .++.++.. .+..+++|+.|+++++
T Consensus 53 l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPRG---------AFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCCEEECCSS
T ss_pred cccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCC-ccCEeCHH---------HhcCCCCCCEEEeCCC
Confidence 445555555544 23333 2222445555555555555 33333320 2334555555555554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.90 E-value=2.7e-05 Score=67.87 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=27.5
Q ss_pred CCCccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCC
Q 009754 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (526)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (526)
+++|++|+++++ .++.+ +...+..+++|++|++++| .++.++.. .+..+++|+.|+++++
T Consensus 56 l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~~---------~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 56 LVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPRG---------AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT---------TTTTCTTCSEEECCSS
T ss_pred CcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCCC-ccceeCHH---------HhccccCCCEEEeCCC
Confidence 445555555544 33333 2222445555555555554 33333320 2334555555555554
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=7.8e-06 Score=80.12 Aligned_cols=120 Identities=16% Similarity=0.081 Sum_probs=68.4
Q ss_pred hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCCCccEEEEecCCCcccCCChHHHh--cCCCCCeeeeccccc-----
Q 009754 141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLR--CLNNLQWLEVRNCDS----- 213 (526)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~--~l~~L~~L~l~~~~~----- 213 (526)
..+..+++|+.|.|+++.++. ++...+++|++|.+..|. +... ....+. .+|+|++|+|+.+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-------l~~~~~~~L~~L~L~~~~-l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-------IGKKPRPNLKSLEIISGG-LPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-------CCSCBCTTCSEEEEECSB-CCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHhcCCCCcEEEEeCCCCce-------eccccCCCCcEEEEecCC-CChH-HHHHHHHccCCCCcEEEEeccccccccc
Confidence 344567899999998864332 111236899999998774 3221 111232 789999999864211
Q ss_pred --cchhccccccccccCCCCCCCCccceEecCCCccccccccCCCccccCCCcceEeeecCCCCccc
Q 009754 214 --IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETF 278 (526)
Q Consensus 214 --l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 278 (526)
+..+.... ....+|+|+.|.+.+|...............+++|++|+++. +.+.+.
T Consensus 237 ~~~~~l~~~l--------~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~ 294 (362)
T 2ra8_A 237 GDMNVFRPLF--------SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDE 294 (362)
T ss_dssp SCGGGTGGGS--------CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHH
T ss_pred hhHHHHHHHH--------hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChH
Confidence 11111110 224588999999987643221111100012578899999976 456553
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.87 E-value=6.2e-05 Score=65.52 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=28.5
Q ss_pred CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccc
Q 009754 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC 381 (526)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 381 (526)
++|+.|+++++ .++.++...+ ..+++|+.|+++++ .++.+|.. +..+++|++|+++++
T Consensus 57 ~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 57 VNLQQLYFNSN-KLTAIPTGVF---DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cCCCEEECCCC-CCCccChhHh---CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 45555555442 3444433322 44555555555554 34444443 455566666666553
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.84 E-value=6.9e-05 Score=64.92 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=48.3
Q ss_pred CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCCC-CCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (526)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (526)
++++.|++++. .++.++...+ ..+++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. .+..++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVF---DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNLK 102 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT---TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred CCCcEEEcCCC-cCCccChhhh---cCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHH-HhcCCC
Confidence 56666666663 4555543333 55667777777665 35555543 356677777777763 55555543 235566
Q ss_pred CCceEEEecc
Q 009754 398 NLGRMMIADC 407 (526)
Q Consensus 398 ~L~~L~i~~c 407 (526)
+|++|++++.
T Consensus 103 ~L~~L~L~~N 112 (170)
T 3g39_A 103 SLTHIWLLNN 112 (170)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEeCCC
Confidence 7777776664
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=2.7e-05 Score=76.25 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=32.3
Q ss_pred cccccceeeeccccc----ccccc---ccCceecCCCccEEEecCCCCccccccCcccCCCeeeEEec
Q 009754 57 AFSKLKVLILDYLPT----LTSFC---LENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVT 117 (526)
Q Consensus 57 ~l~~L~~L~l~~~~~----l~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 117 (526)
.|++|+.|.+..... +.... .......+|+|+.|.++++..++ ++. ...++|+.|.+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~~~~~L~~L~L~ 201 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--KPRPNLKSLEII 201 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--CBCTTCSEEEEE
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--ccCCCCcEEEEe
Confidence 478888888765321 11000 11112357888888888774332 222 236777777776
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.73 E-value=0.0043 Score=61.47 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=35.0
Q ss_pred CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (526)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (526)
..|+.+.+.+ .+..+....+ ..++.|+.+.+.. .++.++. .+..+.+|+.+++.. +++.+...++ .++.
T Consensus 265 ~~L~~i~lp~--~~~~I~~~aF---~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~C~ 334 (394)
T 4gt6_A 265 AYLASVKMPD--SVVSIGTGAF---MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF-AGCE 334 (394)
T ss_dssp SSCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCT
T ss_pred ccccEEeccc--ccceecCccc---ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh-hCCC
Confidence 4445544432 2333433333 4445555555532 3344432 334455566555543 3444444322 4555
Q ss_pred CCceEEEe
Q 009754 398 NLGRMMIA 405 (526)
Q Consensus 398 ~L~~L~i~ 405 (526)
+|+.+.|.
T Consensus 335 ~L~~i~ip 342 (394)
T 4gt6_A 335 QLERIAIP 342 (394)
T ss_dssp TCCEEEEC
T ss_pred CCCEEEEC
Confidence 56666553
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.61 E-value=0.00015 Score=70.79 Aligned_cols=98 Identities=10% Similarity=0.146 Sum_probs=66.7
Q ss_pred EeeccCceeecccccCCcCCCceEEecccccccEecc-ccccccccccccccccceeeeccccccccccccCceecCCCc
Q 009754 9 FNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSL 87 (526)
Q Consensus 9 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 87 (526)
++++....+..+|.++.+++|++|+|++++.+..+|. .+.+ +++|++|+|+++ .++...... ...+++|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~--------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L 82 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKS-GLRFVAPDA-FHFTPRL 82 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCS--------CCCCSEEECCSS-CCCEECTTG-GGSCSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhcc--------ccCCCEEECCCC-ccceeCHHH-hcCCcCC
Confidence 4565552344455588888889999986457888875 4554 788888888875 566665543 3468888
Q ss_pred cEEEecCCCCccccccCcccCCCeeeEEec
Q 009754 88 ERVSMTHCPNMKTFSHGILSTPKLHKVQVT 117 (526)
Q Consensus 88 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 117 (526)
+.|+|+++ .++.+|........|+.|++.
T Consensus 83 ~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 83 SRLNLSFN-ALESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp CEEECCSS-CCSCCCSTTTCSCCCCEEECC
T ss_pred CEEeCCCC-ccceeCHHHcccCCceEEEee
Confidence 88888887 466676655544447777766
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.60 E-value=0.0002 Score=69.86 Aligned_cols=101 Identities=21% Similarity=0.113 Sum_probs=67.5
Q ss_pred EEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCce
Q 009754 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR 401 (526)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 401 (526)
.++.++.+.++.+|. . ..+++|+.|+|++++.++.++ ..+..+++|+.|+++++ .+..++... +..+++|+.
T Consensus 12 ~v~~~~~n~l~~ip~-l----~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-L----PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT-S----CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCE
T ss_pred EEEcCCCCCCCccCC-C----CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH-hcCCcCCCE
Confidence 445555435666665 3 667788888888755677776 45778888888888885 677776643 367888888
Q ss_pred EEEecccCcceeeccCCcccccccccccccceeecccc
Q 009754 402 MMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCL 439 (526)
Q Consensus 402 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 439 (526)
|+++++ +++.++. +. ...+ .|+.|++.++
T Consensus 85 L~l~~N-~l~~~~~---~~----~~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 85 LNLSFN-ALESLSW---KT----VQGL-SLQELVLSGN 113 (347)
T ss_dssp EECCSS-CCSCCCS---TT----TCSC-CCCEEECCSS
T ss_pred EeCCCC-ccceeCH---HH----cccC-CceEEEeeCC
Confidence 888875 5665543 10 0112 3888888765
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.58 E-value=8.1e-06 Score=80.55 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=81.7
Q ss_pred ccccceeeeccccccccccccCc----eecCCCccEEEecCCCCcccc-ccCc-ccCCCeeeEEecccccccceeeeccc
Q 009754 58 FSKLKVLILDYLPTLTSFCLENY----TLEFPSLERVSMTHCPNMKTF-SHGI-LSTPKLHKVQVTEKEEGELHHWEGNK 131 (526)
Q Consensus 58 l~~L~~L~l~~~~~l~~~~~~~~----~~~~~~L~~L~l~~c~~l~~l-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 131 (526)
.++|++|+++++. ++....... ....++|+.|++++|. ++.. ...+ ..+++|++|+++++.-
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l---------- 138 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSL---------- 138 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCC----------
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCC----------
Confidence 4566666666543 222111110 0123577777777774 3210 0111 1245677777773200
Q ss_pred cchhhHHhhhhh-cCCCCCcEEEeecCCCCceeccCCCCC--cCCCCCccEEEEecCCCcccCCC---hHHHhcCCCCCe
Q 009754 132 LNSTIQKCYEEM-IGFRDMEYLQLSYFPHLKEIWHGQALP--VSFFNNLARLVVDDCTNMSSAIP---ANLLRCLNNLQW 205 (526)
Q Consensus 132 ~~~~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~---~~~l~~l~~L~~ 205 (526)
.......+...+ ...++|+.|++++|. +++..... ++ ....++|++|++++|. +++... ...+...++|++
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV-LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH-HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCE
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH-HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCe
Confidence 001122233333 246778888888775 44211110 10 0235678888888774 332110 122456778888
Q ss_pred eeeccccccchhcc--ccccccccCCCCCCCCccceEecCCCc
Q 009754 206 LEVRNCDSIEEVLH--LEEQNADKEHRGPLFPKLYGLRLIDLP 246 (526)
Q Consensus 206 L~l~~~~~l~~~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (526)
|++++| .++..+. +.. .+...++|+.|+++++.
T Consensus 216 L~Ls~N-~i~~~g~~~l~~-------~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 216 LNVAYN-GAGDTAALALAR-------AAREHPSLELLHLYFNE 250 (372)
T ss_dssp EECCSS-CCCHHHHHHHHH-------HHHHCSSCCEEECTTSS
T ss_pred EECCCC-CCCHHHHHHHHH-------HHHhCCCCCEEeccCCC
Confidence 888887 4443221 100 22345778888888864
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.013 Score=58.08 Aligned_cols=299 Identities=12% Similarity=0.114 Sum_probs=160.2
Q ss_pred ccCCc-CCCceEEecccccccEeccc-cccccccccccccccceeeeccc--cccccccccCceecCCCccEEEecCCCC
Q 009754 22 QVGIP-SSLVNLNVSRCDKIEEIIRH-VGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENYTLEFPSLERVSMTHCPN 97 (526)
Q Consensus 22 ~~~~l-~~L~~L~L~~c~~l~~l~~~-~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 97 (526)
.+..+ ..|+.+.+-. .++.|... +.+ +.+|+.+.+... ..++.+..... ..+.+|+.+.+.+ .
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~AF~~--------C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~--~ 124 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSNAFYN--------CTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILD--S 124 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTTTTTT--------CTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGT--T
T ss_pred hccCCCCcCEEEEECC--CeeEEhHHHhhC--------CccCceEeecCCCCCeeeEechhhc-hhcccceeeccCC--c
Confidence 35455 3578888754 47777553 333 778888887642 23555444431 2356666654432 2
Q ss_pred ccccccCc-ccCCCeeeEEecccccccceeeeccccchhhHHhh-hhhcCCCCCcEEEeecCCCCceeccCCCCCcCCCC
Q 009754 98 MKTFSHGI-LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN 175 (526)
Q Consensus 98 l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 175 (526)
++.+.... ..+.+|+.+.+.. ....+. ..+..+.+|+.+.+... ++.+.... -...
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~----------------~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~a----F~~~ 182 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPE----------------GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERA----FTGT 182 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCT----------------TCCEECTTTTTTCTTCCEEECCTT--CCEECTTT----TTTC
T ss_pred cceehhhhhhhhcccccccccc----------------eeeeecccceecccccccccccce--eeEecccc----cccc
Confidence 34443322 3466777777752 111111 23446778888887642 44443333 2246
Q ss_pred CccEEEEecCCCcccCCChHHHhcCCCCCeeeeccccccchhcc-ccccccccCC---CCCCCCccceEecCCCcccccc
Q 009754 176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH-LEEQNADKEH---RGPLFPKLYGLRLIDLPKLKRF 251 (526)
Q Consensus 176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~ 251 (526)
+|+.+.+... ++.+ ....+..+..++......... ..+.. .......... .......+..+.+-. .++.+
T Consensus 183 ~l~~i~ip~~--~~~i-~~~af~~c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i 256 (394)
T 4gt6_A 183 ALTQIHIPAK--VTRI-GTNAFSECFALSTITSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARI 256 (394)
T ss_dssp CCSEEEECTT--CCEE-CTTTTTTCTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEE
T ss_pred ceeEEEECCc--cccc-ccchhhhccccceeccccccc-ccccceeecccccccccccccccccccceEEcCC--cceEc
Confidence 7888888653 3333 233366777777776644311 11100 0000000000 001112233333321 22222
Q ss_pred ccCCCccccCCCcceEeeecCCCCccccCcccceeeecCCCCccccchhhhhhccccccccccCCCCCCccEEEecCCCC
Q 009754 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (526)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 331 (526)
....+..+..|+.+.+.+. +..+.... ..+++.|+.+.+.. .
T Consensus 257 --~~~aF~~c~~L~~i~lp~~--~~~I~~~a--------------------------------F~~c~~L~~i~l~~--~ 298 (394)
T 4gt6_A 257 --ETHAFDSCAYLASVKMPDS--VVSIGTGA--------------------------------FMNCPALQDIEFSS--R 298 (394)
T ss_dssp --CTTTTTTCSSCCEEECCTT--CCEECTTT--------------------------------TTTCTTCCEEECCT--T
T ss_pred --ccceeeecccccEEecccc--cceecCcc--------------------------------cccccccccccCCC--c
Confidence 1223556777777776541 22211111 12457888888853 5
Q ss_pred ceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhccCCceEEEecc
Q 009754 332 VQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (526)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 407 (526)
++.++...| ..+.+|+++.+.+ .++.+. ..+..+.+|+.+.+.. +++.+...++ .++++|+.+++.+.
T Consensus 299 i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 299 ITELPESVF---AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGS 367 (394)
T ss_dssp CCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSC
T ss_pred ccccCceee---cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCc
Confidence 777777666 7788999999865 466664 3567788999999864 4677766543 68889999988763
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.017 Score=56.62 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=66.3
Q ss_pred CCCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccCC-CCCCCCCCCEEeeccccCccccccchhhhhc
Q 009754 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESL 396 (526)
Q Consensus 318 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 396 (526)
+..|+.+.+.. .++.+....+ ..+.+|+.+.+.. .++.++. .+..+++|+.+.+.+ ..++.++..++ .++
T Consensus 239 ~~~L~~i~lp~--~v~~I~~~aF---~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF-~~c 309 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGSFLL---QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVF-MDC 309 (379)
T ss_dssp CSSCCEEEECT--TCCEECTTTT---TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTT-TTC
T ss_pred CccceEEEcCC--CccEeCcccc---ceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhh-cCC
Confidence 45677777654 3566655544 5667777777754 3555543 456677788887765 24556655433 567
Q ss_pred cCCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCC
Q 009754 397 VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGN 449 (526)
Q Consensus 397 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 449 (526)
.+|+.+.+.+ .++.+.. . ....+.+|+.+.+.. +++.+....
T Consensus 310 ~~L~~i~lp~--~l~~I~~---~----aF~~C~~L~~i~ip~--~v~~I~~~a 351 (379)
T 4h09_A 310 VKLSSVTLPT--ALKTIQV---Y----AFKNCKALSTISYPK--SITLIESGA 351 (379)
T ss_dssp TTCCEEECCT--TCCEECT---T----TTTTCTTCCCCCCCT--TCCEECTTT
T ss_pred CCCCEEEcCc--cccEEHH---H----HhhCCCCCCEEEECC--ccCEEchhH
Confidence 7788887753 4555543 1 112356677776643 466665544
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.42 E-value=5.9e-06 Score=81.55 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=16.5
Q ss_pred CCCCCCCEEeeccccCccccccchhh---hhccCCceEEEecc
Q 009754 368 WHLENLEALEVSKCHGLINLLTFSTS---ESLVNLGRMMIADC 407 (526)
Q Consensus 368 ~~l~~L~~L~l~~c~~l~~l~~~~~~---~~l~~L~~L~i~~c 407 (526)
...++|++|++++| .+++.....++ ...++|++|+++++
T Consensus 208 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 208 DRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred hcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 33445555555554 33332221111 22345555555544
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.37 E-value=0.039 Score=54.11 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCccEEEecCCCCceEecccCChhhhhhcccceeEeccCcCccccC-CCCCCCCCCCEEeeccccCccccccchhhhhcc
Q 009754 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (526)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (526)
..++.+.+.. .++.+....+ ..+..|+.+.+.. .++.+. ..+..+.+|+.+.+.. .++.++..+ ...++
T Consensus 217 ~~l~~i~~~~--~~~~i~~~~f---~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~a-F~~c~ 286 (379)
T 4h09_A 217 KNLKKITITS--GVTTLGDGAF---YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLL-CSGCS 286 (379)
T ss_dssp SSCSEEECCT--TCCEECTTTT---TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTT-TTTCT
T ss_pred cccceeeecc--ceeEEccccc---cCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccc-ccccc
Confidence 4555555543 3445544433 5566777777754 244443 2345566777777753 355555432 35667
Q ss_pred CCceEEEecccCcceeeccCCcccccccccccccceeecccccccceecCCCccCCCCCccEEEEcCCCCceecc
Q 009754 398 NLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELRYLELYCLPSLTSFCLGNYALEFPSLKQVVVRQCPKMKIFS 472 (526)
Q Consensus 398 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~lp 472 (526)
+|+.+.+.+. .++.+.. + ....+.+|+.+.+.. +++.+...... .|.+|+++.+.. +++.+.
T Consensus 287 ~L~~i~l~~~-~i~~I~~---~----aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 287 NLTKVVMDNS-AIETLEP---R----VFMDCVKLSSVTLPT--ALKTIQVYAFK-NCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TCCEEEECCT-TCCEECT---T----TTTTCTTCCEEECCT--TCCEECTTTTT-TCTTCCCCCCCT--TCCEEC
T ss_pred cccccccccc-ccceehh---h----hhcCCCCCCEEEcCc--cccEEHHHHhh-CCCCCCEEEECC--ccCEEc
Confidence 7777777542 3555533 1 112346677766642 35666554433 466777766632 355444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.56 E-value=0.011 Score=51.48 Aligned_cols=19 Identities=11% Similarity=-0.102 Sum_probs=10.2
Q ss_pred hhhhcCCCCCcEEEeecCC
Q 009754 140 YEEMIGFRDMEYLQLSYFP 158 (526)
Q Consensus 140 ~~~~~~~~~L~~L~l~~~~ 158 (526)
...+...++|++|+|+++.
T Consensus 86 ~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 86 AEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHCSSCCEEECCSSC
T ss_pred HHHHHhCCCcCEEECcCCc
Confidence 3344444556666666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.24 E-value=0.019 Score=53.07 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=47.0
Q ss_pred CCCCccEEEEecCCCcccCCC-hHHHhcCCCCCeeeeccccccchhccccccccccCCCCCCCCccceEecCCCcccccc
Q 009754 173 FFNNLARLVVDDCTNMSSAIP-ANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (526)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 251 (526)
.+++|++|+++++ .++.+.+ ...+..+++|+.|+|++| .++.+.++. .+..+ +|+.|.+.+++--..+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~--------~l~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD--------KIKGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGG--------GGTTS-CCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhh--------hcccC-CcceEEccCCcCcccc
Confidence 3566777777766 3443321 123567788888888776 455543322 22233 7788888776532222
Q ss_pred ccC----CCccccCCCcceEeee
Q 009754 252 CNF----TGNIIELPELQHLTIQ 270 (526)
Q Consensus 252 ~~~----~~~~~~~~~L~~L~l~ 270 (526)
+.. ...+..+|+|+.|+=.
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcchhHHHHHHHHCcccCeECCc
Confidence 110 0114567777777643
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.23 E-value=0.0042 Score=54.32 Aligned_cols=60 Identities=18% Similarity=0.090 Sum_probs=30.9
Q ss_pred hcccceeEeccCcCcc-----ccCCCCCCCCCCCEEee--ccccCccccccch---hhhhccCCceEEEecc
Q 009754 346 FANLESLEISECSKLQ-----KLVPPSWHLENLEALEV--SKCHGLINLLTFS---TSESLVNLGRMMIADC 407 (526)
Q Consensus 346 l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l--~~c~~l~~l~~~~---~~~~l~~L~~L~i~~c 407 (526)
.++|++|++++|. ++ .+...+...++|++|++ ++ +.+.+-.... .+...++|++|+++++
T Consensus 92 n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3456666665543 22 12334455566777777 44 3444432211 2234467777777665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.27 E-value=0.029 Score=51.86 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=5.5
Q ss_pred CCCCCCEEeecc
Q 009754 369 HLENLEALEVSK 380 (526)
Q Consensus 369 ~l~~L~~L~l~~ 380 (526)
.+++|+.|++++
T Consensus 194 ~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 194 KAPNLKILNLSG 205 (267)
T ss_dssp HSTTCCEEECTT
T ss_pred hCCCCCEEECCC
Confidence 344444444444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.72 E-value=2.1 Score=34.39 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=8.8
Q ss_pred CCCceEEecccccccEecc
Q 009754 27 SSLVNLNVSRCDKIEEIIR 45 (526)
Q Consensus 27 ~~L~~L~L~~c~~l~~l~~ 45 (526)
++|++|+|++ +++..+|.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~ 48 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPP 48 (130)
T ss_dssp TTCSEEECTT-SCCSSCCT
T ss_pred cCCCEEECCC-CcCCccCh
Confidence 3455555555 24555544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.07 E-value=2 Score=34.50 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCccEEEEecCCCcccCCChHHHhcCCCCCeeeecccc
Q 009754 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCD 212 (526)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 212 (526)
++|++|+|+++ .++.+ +.+.+..+++|+.|+|++|.
T Consensus 31 ~~l~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTAL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCcc-ChhhhhhccccCEEEecCCC
Confidence 45677777666 34444 34446666777777776653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=67.27 E-value=1.4 Score=38.32 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=16.4
Q ss_pred CCCCEEeeccccCccccccchhh---hhccCCceEEEecc
Q 009754 371 ENLEALEVSKCHGLINLLTFSTS---ESLVNLGRMMIADC 407 (526)
Q Consensus 371 ~~L~~L~l~~c~~l~~l~~~~~~---~~l~~L~~L~i~~c 407 (526)
+.|+.|++++| .+.+....+++ ..-++|++|+++++
T Consensus 70 ~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 70 KHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 45555665554 34433322222 22345566665553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=64.99 E-value=3.6 Score=35.75 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=28.7
Q ss_pred hcccceeEeccCcCcc-----ccCCCCCCCCCCCEEeecccc--Cccccccch---hhhhccCCceEEEec
Q 009754 346 FANLESLEISECSKLQ-----KLVPPSWHLENLEALEVSKCH--GLINLLTFS---TSESLVNLGRMMIAD 406 (526)
Q Consensus 346 l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~--~l~~l~~~~---~~~~l~~L~~L~i~~ 406 (526)
=++|+.|+|+++. +. .+...+..-+.|++|+++++. .+.+-.... ....-++|+.|++..
T Consensus 97 N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 97 SPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 3556666665543 22 122233334557777776542 233322111 223446777777753
Done!