BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009755
         (526 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 260 ISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVL 319
           I  A WF  P       P F       ++ A LV + E  G     + +          L
Sbjct: 207 IINAHWFALP---TLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGL 263

Query: 320 SRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKF 379
            R +   G+  ++ G FG+ T +T   EN+G++ +TRV S  V+  +A F I  SC+GK 
Sbjct: 264 HRSMFANGLSTVISGFFGS-TPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKL 322

Query: 380 GAVFASIPIPIFAALYCVLFGLVASVGLSFL--QFTNMNCMRNLVITGLSLFLGIS 433
            A    IP+P+   +  +L+G++ + G+  L     + N  +NL++T + L +G+S
Sbjct: 323 AAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVS 378



 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 12/75 (16%)

Query: 33  ETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALFGT-R 91
           +TI L+ Q+   M G +V++P L        + + A    T+L  +GI TLL       +
Sbjct: 16  QTIPLSLQHLFAMFGATVLVPVLF-------HINPA----TVLLFNGIGTLLYLFICKGK 64

Query: 92  LPAVVGGSFAYVIPI 106
           +PA +G SFA++ P+
Sbjct: 65  IPAYLGSSFAFISPV 79


>pdb|4HYC|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|E Chain E, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|F Chain F, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|G Chain G, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|H Chain H, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYD|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYD|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYD|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYD|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYG|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
 pdb|4HYG|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
 pdb|4HYG|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
 pdb|4HYG|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
          Length = 301

 Score = 28.9 bits (63), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 356 RVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVASVGLSFL--QFT 413
           R G RR +    GF +F + L  FGA+      P  AA    L G VA   L +L  ++ 
Sbjct: 66  RTGGRRFIAAFIGFALFMTFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWY 125

Query: 414 NMNCMRNLVITGLSLFLGIS 433
            ++ +  L+  G++   GIS
Sbjct: 126 VIDILGVLISAGVASIFGIS 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.143    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,045,539
Number of Sequences: 62578
Number of extensions: 617535
Number of successful extensions: 1474
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 10
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)