Query 009755
Match_columns 526
No_of_seqs 188 out of 1734
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.7E-69 5.7E-74 575.5 31.1 390 20-486 3-409 (429)
2 3qe7_A Uracil permease; uracil 72.5 18 0.00062 37.7 10.6 89 320-409 44-143 (429)
3 3o7q_A L-fucose-proton symport 34.4 3.3E+02 0.011 26.5 13.2 100 52-165 49-152 (438)
4 4aps_A DI-OR tripeptide H+ sym 23.8 5.3E+02 0.018 25.5 11.7 47 51-97 35-91 (491)
5 3o7q_A L-fucose-proton symport 20.8 2E+02 0.007 28.1 7.5 60 28-87 257-317 (438)
6 1pw4_A Glycerol-3-phosphate tr 18.6 4E+02 0.014 25.9 9.2 38 50-87 273-310 (451)
7 1pw4_A Glycerol-3-phosphate tr 17.3 1.4E+02 0.0049 29.3 5.5 61 32-94 28-95 (451)
8 2gfp_A EMRD, multidrug resista 12.7 8.4E+02 0.029 22.9 11.2 41 57-97 27-71 (375)
9 2xut_A Proton/peptide symporte 10.0 9.9E+02 0.034 23.7 9.5 36 52-87 35-76 (524)
10 1bts_A BAND 3 anion transport 8.3 1.1E+02 0.0037 18.8 0.6 22 320-341 4-25 (26)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=1.7e-69 Score=575.53 Aligned_cols=390 Identities=25% Similarity=0.430 Sum_probs=347.3
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh-CCCcceEEec
Q 009755 20 VFQMFLSAGFGKAETILLAFQNYILMLGTSVMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQALF-GTRLPAVVGG 98 (526)
Q Consensus 20 ~~~y~~~d~~p~~~~i~~GlQh~lam~~~~i~vPlil~~a~gl~~~~~~~li~a~ll~sGi~tllq~~~-G~rlPiv~g~ 98 (526)
|+.|++|||+|+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|+++|+
T Consensus 3 ~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G~ 71 (429)
T 3qe7_A 3 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLGS 71 (429)
T ss_dssp -CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEEE
T ss_pred CcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEecC
Confidence 4679999999999999999999999999999999996 8886 58999999999999986 8999999999
Q ss_pred hhhhHHHHHHHHhhccccccCcchhhHHhhHHHHHHHHHHHHHHHHHHhhh--hhh-hhHhhhcCcccHHHHHHHHHHHh
Q 009755 99 SFAYVIPIAYIINDSSLQRITDDHERFIQTMRAIQGALIVASSIQIILGYS--QVW-GLFSRFFSPLGIAPVVGLVGLGL 175 (526)
Q Consensus 99 sfa~i~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ga~ivaGvi~illg~~--g~~-~~l~~~fPp~V~G~~i~lIGl~l 175 (526)
||+|++++..+.. ++|++++|+++++|+++++++++ ++. +|++|+|||+|+|.++++||+++
T Consensus 72 sfafi~~~~~i~~---------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l 136 (429)
T 3qe7_A 72 SFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLEL 136 (429)
T ss_dssp CGGGHHHHHHHGG---------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHH
Confidence 9999998876643 36999999999999999999987 543 69999999999999999999999
Q ss_pred HHhhhcccc-----------cchhhHHHHHHHHHHHHHhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHhhcCCCCC
Q 009755 176 FQRGFPLLG-----------NCVEIGIPMLLLVIGLSQYLKHVRPFRDLPIFERFPVLISVTIIWIYSVILTASGAYRGK 244 (526)
Q Consensus 176 ~~~~~~~~~-----------~~~~v~~~~l~~ii~l~~~~~~~~~~~~~~~~r~~~vLigiivG~l~a~~lg~~g~~~~~ 244 (526)
++.++++.+ .++.+++.++++++++.++.| +++|++++|+|+++||++++.+|..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k--------g~~~~~aiLigivvg~~~a~~~G~~------ 202 (429)
T 3qe7_A 137 AGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR--------GFLAIIPILIGVLVGYALSFAMGIV------ 202 (429)
T ss_dssp HHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS--------TTTTTHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc--------ccchhhHHHHHHHHHHHHHHHhcCC------
Confidence 998876543 245678888888777766554 4579999999999999999998853
Q ss_pred CCccccccccCccCcCCCCCccccCccccccCCcccHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcCCCCCCcCCCcchh
Q 009755 245 PYTTQISCRTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAASRLAIATPPPAYVLSRGIG 324 (526)
Q Consensus 245 ~~~~~~~~~~d~~~~v~~a~~~~lP~~~~~g~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~l~ 324 (526)
|++. +.+++|+++|. |+.|+||++.+.+++++++++++|++|++.++++..+++.+++++.||++.
T Consensus 203 ----------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~ 268 (429)
T 3qe7_A 203 ----------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 268 (429)
T ss_dssp ----------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred ----------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence 4443 56689999995 567999999999999999999999999999999998866556789999999
Q ss_pred hHhHHHHHhhhcCCCCCCcccccchhhhhhcccCcchHHHHHHHHHHHHHhhhHHHHHHHhCChhHHHHHHHHHHHHHHH
Q 009755 325 WQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSCLGKFGAVFASIPIPIFAALYCVLFGLVAS 404 (526)
Q Consensus 325 ~dGl~~ilaglfG~~p~tt~s~~n~g~i~~Tg~~SR~~~~~~g~~lillgl~pk~~al~a~IP~~Vlgg~ll~~fg~i~~ 404 (526)
+||++|+++|+||++|.|+|+ ||+|+++.||++||++.+.+|+++++++++||++++++.||.||+||+++++||++..
T Consensus 269 adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~ 347 (429)
T 3qe7_A 269 ANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGA 347 (429)
T ss_dssp HHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh--hccccCCCccEEeehhHHHhhhhhhhhhhcccCCCCCCcccccccchhHHHHHHhcchhHHHHHHHHHHhhc
Q 009755 405 VGLSFL--QFTNMNCMRNLVITGLSLFLGISIPQFFNEYWNPQHHGLVHTNAGWFNAFLNTIFSSPPTVGLIVAVFLDNT 482 (526)
Q Consensus 405 ~Gi~~l--~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln~~ 482 (526)
+|+|.+ +++|++++||.+|+|+++.+|++... +| ++.+..||+++|+++|++||++
T Consensus 348 ~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~ 405 (429)
T 3qe7_A 348 SGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLI 405 (429)
T ss_dssp HHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHH
Confidence 999999 89999988999999999999998521 11 2346789999999999999999
Q ss_pred CCCC
Q 009755 483 LEVE 486 (526)
Q Consensus 483 ~~~~ 486 (526)
+|++
T Consensus 406 l~~~ 409 (429)
T 3qe7_A 406 FKLI 409 (429)
T ss_dssp HTCC
T ss_pred hcCc
Confidence 9965
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=72.48 E-value=18 Score=37.67 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=53.1
Q ss_pred CcchhhHhHHHHHhhhcCCCCCCcccccchhh----hhhcccCcc----hHHHHHHHHHHHHHhh-hHH--HHHHHhCCh
Q 009755 320 SRGIGWQGIGILLDGLFGTGTGSTVSVENVGL----LGLTRVGSR----RVVQISAGFMIFFSCL-GKF--GAVFASIPI 388 (526)
Q Consensus 320 ~r~l~~dGl~~ilaglfG~~p~tt~s~~n~g~----i~~Tg~~SR----~~~~~~g~~lillgl~-pk~--~al~a~IP~ 388 (526)
+.++.+.|+++++=+++++.+.-.+.+.|-+. ....+ .+- -+.+.+|++.++++++ .|+ ..+...+|.
T Consensus 44 ~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Pp 122 (429)
T 3qe7_A 44 ATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPP 122 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCC
Confidence 36899999999999988655432222233332 11122 221 1356678888888876 333 368999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 009755 389 PIFAALYCVLFGLVASVGLSF 409 (526)
Q Consensus 389 ~Vlgg~ll~~fg~i~~~Gi~~ 409 (526)
.|+|.+....--.....+++.
T Consensus 123 vviG~~i~~IGl~l~~~~~~~ 143 (429)
T 3qe7_A 123 AAMGAIVAVIGLELAGVAAGM 143 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHHh
Confidence 888887654322233334443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=34.37 E-value=3.3e+02 Score=26.45 Aligned_cols=100 Identities=8% Similarity=-0.032 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEechhhhHHHHHHHHhhccccccCcchhhHHh
Q 009755 52 IPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVVGGSFAYVIPIAYIINDSSLQRITDDHERFIQ 127 (526)
Q Consensus 52 vPlil~~a~gl~~~~~~~li~a~ll~sGi~tllq~~----~G~rlPiv~g~sfa~i~~~~~i~~~~~~~~~~~~~~~~~~ 127 (526)
.|. +.+..|+++++...+.+...+...++.++-+. +|.|..++.+.....+........... .
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------------~ 115 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------------M 115 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT------------T
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc------------c
Confidence 344 34558999999888888888888888888775 566665544443222222111000000 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhcCcccHH
Q 009755 128 TMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGIA 165 (526)
Q Consensus 128 g~~~~~ga~ivaGvi~illg~~g~~~~l~~~fPp~V~G 165 (526)
.+.....+.++.|+..-..-.. ....+.+++|+.--+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~ 152 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGH 152 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHH
Confidence 3455555556666554433322 235667788875443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=23.80 E-value=5.3e+02 Score=25.55 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHH-----hCCCcceEEe
Q 009755 51 MIPTLLVHA-----MGGSNGDKARVIQTLLFVSGINTLLQAL-----FGTRLPAVVG 97 (526)
Q Consensus 51 ~vPlil~~a-----~gl~~~~~~~li~a~ll~sGi~tllq~~-----~G~rlPiv~g 97 (526)
..|..+.+. .|.+.++...+.+...+...++.++.+. +|.|..++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 345555565 8999999988888888888888888875 3555444333
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=20.76 E-value=2e+02 Score=28.09 Aligned_cols=60 Identities=10% Similarity=-0.096 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHhHHHHH-HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009755 28 GFGKAETILLAFQNYILMLGTSVMIPTL-LVHAMGGSNGDKARVIQTLLFVSGINTLLQAL 87 (526)
Q Consensus 28 ~~p~~~~i~~GlQh~lam~~~~i~vPli-l~~a~gl~~~~~~~li~a~ll~sGi~tllq~~ 87 (526)
++......+..+-............|.. +.+..|.++++...+.....++..++.++-.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333333344666 66666999877776666655666666666554
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.59 E-value=4e+02 Score=25.93 Aligned_cols=38 Identities=16% Similarity=-0.024 Sum_probs=23.9
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009755 50 VMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL 87 (526)
Q Consensus 50 i~vPlil~~a~gl~~~~~~~li~a~ll~sGi~tllq~~ 87 (526)
...|..+.+..|.++.+...+.....++..++.++-..
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466655557888877666666655666666666554
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=17.28 E-value=1.4e+02 Score=29.31 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhH---hHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 009755 32 AETILLAFQNYILMLGTS---VMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPA 94 (526)
Q Consensus 32 ~~~i~~GlQh~lam~~~~---i~vPlil~~a~gl~~~~~~~li~a~ll~sGi~tllq~~----~G~rlPi 94 (526)
+......+.+++..+... ...|.+.. .. .++.+...+.+...+...++.++-+. +|.|..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 95 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence 334444455544443322 22343332 25 78888888877777877887877765 4555433
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=12.75 E-value=8.4e+02 Score=22.89 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=29.7
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEe
Q 009755 57 VHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVVG 97 (526)
Q Consensus 57 ~~a~gl~~~~~~~li~a~ll~sGi~tllq~~----~G~rlPiv~g 97 (526)
.+..|.++++...+.+...+...++.++-+. +|.|..+..+
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 71 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVG 71 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3457999988888888888888888877765 4666655433
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=9.98 E-value=9.9e+02 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=26.7
Q ss_pred HHHHHHHhcC------CChhHHHHHHHHHHHHHHHHHHHHHH
Q 009755 52 IPTLLVHAMG------GSNGDKARVIQTLLFVSGINTLLQAL 87 (526)
Q Consensus 52 vPlil~~a~g------l~~~~~~~li~a~ll~sGi~tllq~~ 87 (526)
.|..+.+..| .++.+...+.+...+...++.++-+.
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~ 76 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGW 76 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556678 89888888877777777788877775
No 10
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=8.28 E-value=1.1e+02 Score=18.83 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=16.2
Q ss_pred CcchhhHhHHHHHhhhcCCCCC
Q 009755 320 SRGIGWQGIGILLDGLFGTGTG 341 (526)
Q Consensus 320 ~r~l~~dGl~~ilaglfG~~p~ 341 (526)
++.+++++++.++=++|++-|.
T Consensus 4 ~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 4 SELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHhcccC
Confidence 4678889999999999988764
Done!