Query 009755
Match_columns 526
No_of_seqs 188 out of 1734
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 12:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009755.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009755hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 13.6 3.9E+02 0.028 23.3 11.6 36 52-87 272-307 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 8.6 2.7E+02 0.019 23.7 6.5 44 53-96 31-78 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 6.6 3.4E+02 0.025 23.7 6.4 43 50-94 46-92 (447)
4 d2j7ja2 g.37.1.1 (A:29-57) Tra 2.9 73 0.0053 18.2 -1.2 13 509-521 11-23 (29)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 2.6 5.4E+02 0.039 14.4 2.4 15 219-233 12-26 (32)
6 d1q90g_ f.23.26.1 (G:) PetG su 2.0 6.8E+02 0.05 14.1 2.3 7 371-377 9-15 (30)
7 d1kf6d_ f.21.2.2 (D:) Fumarate 1.7 5.3E+02 0.038 19.6 1.9 16 27-42 10-25 (119)
8 d2fug71 d.82.2.2 (7:3-129) NAD 1.6 4E+02 0.029 20.3 0.9 13 508-520 41-53 (127)
9 d1xrda1 f.3.1.1 (A:1-52) Light 1.5 8.5E+02 0.062 15.6 2.4 16 360-375 11-26 (52)
10 d1phza1 d.58.18.3 (A:19-115) P 1.4 9.7E+02 0.071 16.9 3.0 37 4-40 2-38 (97)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.63 E-value=3.9e+02 Score=23.27 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009755 52 IPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL 87 (526)
Q Consensus 52 vPlil~~a~gl~~~~~~~li~a~ll~sGi~tllq~~ 87 (526)
.|..+.+..+.+.++.........+...+++++..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhh
Confidence 355555556888888777777777777777777765
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.62 E-value=2.7e+02 Score=23.68 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=33.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH----hCCCcceEE
Q 009755 53 PTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPAVV 96 (526)
Q Consensus 53 Plil~~a~gl~~~~~~~li~a~ll~sGi~tllq~~----~G~rlPiv~ 96 (526)
|.-+.+..|+++.|...+.+...+...++..+-+. +|.|..++.
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~ 78 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 44466678999999888888888888888888775 577765543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=3.4e+02 Score=23.70 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 009755 50 VMIPTLLVHAMGGSNGDKARVIQTLLFVSGINTLLQAL----FGTRLPA 94 (526)
Q Consensus 50 i~vPlil~~a~gl~~~~~~~li~a~ll~sGi~tllq~~----~G~rlPi 94 (526)
++.|.+. ..|++++|...+.+...+..++++++-+. +|.|..+
T Consensus 46 ~~~p~~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~ 92 (447)
T d1pw4a_ 46 LAMPYLV--EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 92 (447)
T ss_dssp HHHHHTT--SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 3445442 37999999998888888888998888875 4555443
No 4
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=2.91 E-value=73 Score=18.25 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.1
Q ss_pred CCccccCCccccc
Q 009755 509 NEEFYTLPFNLNR 521 (526)
Q Consensus 509 ~~~~~~~p~~~~~ 521 (526)
-++.|++|+++.|
T Consensus 11 cdk~fs~ps~lkr 23 (29)
T d2j7ja2 11 CDKRFSLPSRLKR 23 (29)
T ss_dssp CCCEESSHHHHHH
T ss_pred ccccccCHHHHhh
Confidence 3456888888765
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.62 E-value=5.4e+02 Score=14.42 Aligned_cols=15 Identities=7% Similarity=0.452 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHH
Q 009755 219 FPVLISVTIIWIYSV 233 (526)
Q Consensus 219 ~~vLigiivG~l~a~ 233 (526)
.+...|+.+|.+++.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 345667777766653
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.00 E-value=6.8e+02 Score=14.06 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=4.0
Q ss_pred HHHHhhh
Q 009755 371 IFFSCLG 377 (526)
Q Consensus 371 illgl~p 377 (526)
+++|++|
T Consensus 9 ivlGlip 15 (30)
T d1q90g_ 9 IVLGLVP 15 (30)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 3556666
No 7
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=1.68 E-value=5.3e+02 Score=19.65 Aligned_cols=16 Identities=0% Similarity=-0.683 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHHHHH
Q 009755 27 AGFGKAETILLAFQNY 42 (526)
Q Consensus 27 d~~p~~~~i~~GlQh~ 42 (526)
|+|.++..+-+|=.+.
T Consensus 10 ~EPi~WgLFgAGGm~~ 25 (119)
T d1kf6d_ 10 DEPVFWGLFGAGGMWS 25 (119)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CCCchheeecCCchhH
Confidence 5566777777776554
No 8
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=1.58 E-value=4e+02 Score=20.26 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.3
Q ss_pred CCCccccCCcccc
Q 009755 508 RNEEFYTLPFNLN 520 (526)
Q Consensus 508 ~~~~~~~~p~~~~ 520 (526)
+-+++|+||+-++
T Consensus 41 RMERpYdLPTTvM 53 (127)
T d2fug71 41 RMERPYDLPTTIM 53 (127)
T ss_dssp CCSSCCCCSCSEE
T ss_pred hccccccCChhhe
Confidence 5678899998765
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=1.52 E-value=8.5e+02 Score=15.62 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHHHHh
Q 009755 360 RRVVQISAGFMIFFSC 375 (526)
Q Consensus 360 R~~~~~~g~~lillgl 375 (526)
|++.+.-+++|.++++
T Consensus 11 Rr~lva~~~fL~~LAl 26 (52)
T d1xrda1 11 RQALVGLATFLFVLAL 26 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555544
No 10
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.39 E-value=9.7e+02 Score=16.87 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=0.0
Q ss_pred ccccccCCCCCcccccccccccCCCCCHHHHHHHHHH
Q 009755 4 QKTLKSLVPFDTATFQVFQMFLSAGFGKAETILLAFQ 40 (526)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~y~~~d~~p~~~~i~~GlQ 40 (526)
|++...+.+.+..+...++|.++++|-..-.++..++
T Consensus 2 ~~~~~~e~~~~~~~ktSl~f~~~~~pGaL~~vL~~f~ 38 (97)
T d1phza1 2 QETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFE 38 (97)
T ss_dssp CCCSCCCCCCCSSCCEEEEEEEECCTTHHHHHHHHHH
T ss_pred CCCCcCcCCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Done!