BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009756
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 243/483 (50%), Gaps = 44/483 (9%)
Query: 42 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 101
EA F P GAVL++ N RL+ +A+IL+HA V++ D L E A++ G
Sbjct: 87 EAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE-AIR-------G 138
Query: 102 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 161
+LKT V+ DE L Y A G E DP + PE + + YT+
Sbjct: 139 ELKTVQHFVVMDEKAPEGYLAYEEALG--------EEADP---VRVPER--AACGMAYTT 185
Query: 162 GTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSLAALCG 219
GTT PKGVV SHR L SL +L+ G ++E V L +PMFH N W ++ A L G
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA-ATLVG 244
Query: 220 TSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 277
L ++ ++ GVT P V A+A+ E T L + + G+
Sbjct: 245 AKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL-ESTGHRLKTLRRLVVGGS 303
Query: 278 PPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAW-KPEWDSLPFETQARLNARQGVRTI 336
P SL+ + G + YGLTE T P V + K +SL E + L A+ G+ I
Sbjct: 304 AAPRSLIARFERMGVEVRQGYGLTE-TSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PI 361
Query: 337 CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLA 395
L L V D +PVP DGK +GE+ ++G + GY N +A A +G+F +GD+A
Sbjct: 362 PLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIA 420
Query: 396 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 455
V + Y+EIKDRLKD+I SGGE ISSV++E L HP V EAAVVA P +W E P A
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480
Query: 456 VT---LKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 511
V KP +EL++ +A + +P + VFA +P+++ GK K LR
Sbjct: 481 VVPRGEKPTPEELNE--------HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532
Query: 512 KAK 514
+ K
Sbjct: 533 QYK 535
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 149/472 (31%), Positives = 224/472 (47%), Gaps = 51/472 (10%)
Query: 45 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
+GA GAV IN RL A V+FILS + S VVI + + + + + A ++
Sbjct: 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQAD---- 137
Query: 105 TPHLIV--IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 162
P + IG +S + R A E +E G + ++ + YTSG
Sbjct: 138 PPGTVTDWIGADSLAER------LRSAAADEPAVECGGDD-----------NLFIMYTSG 180
Query: 163 TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TS 221
TT PKGVV +H + + + A + L LPMFH + T +A+ G T
Sbjct: 181 TTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSAMRGVTL 239
Query: 222 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 281
I + Q A V++ I V A P +LN + PE L + T GAP P
Sbjct: 240 ISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAPMPE 298
Query: 282 SLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 341
+L+ + K + Y LTE G ++ L E R G T+ D
Sbjct: 299 ALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRATMFTD-- 347
Query: 342 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 401
+ R + V + GE+V++ ++K Y P+A +AF NGWF +GD+ +
Sbjct: 348 --VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEG 404
Query: 402 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 461
Y+ IKDRLKD+IISGGEN+ E+E V+ P V E AV+ PDE+WGE A V +
Sbjct: 405 YLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVV--AD 462
Query: 462 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 512
+E+ + ++ E +C ++ Y +PK V+FA A+P++ TGKI K +LR +
Sbjct: 463 QNEVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 204/489 (41%), Gaps = 51/489 (10%)
Query: 33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92
++ N M E + GA+L +N RLNA +AF+L + +VV+ ++ + L
Sbjct: 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL 121
Query: 93 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
S G +K YA+ G+ + F + P
Sbjct: 122 P-----SLGGVKK----------------AYAIGDGSGPFAPFKDLASDTPFSAPEFGAA 160
Query: 153 QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 212
+ +T+ P+G ++S + + W + E V L LP+FH G
Sbjct: 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220
Query: 213 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCA-APVVLNAIANASPEDTILPLTNVVN 271
+L G S+ + I H VT AP++ N + A+P + L V
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ-LASLRAVTG 279
Query: 272 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 331
++T P F + T+G +E +G ++ + R +
Sbjct: 280 LDT----PETIERFEATCPNATFWATFGQSETSGLSTFAPY-------------RDRPKS 322
Query: 332 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 391
R + + V+DA ++P+P +GEIV+RG V KGY N A + AF NGW H+
Sbjct: 323 AGRPLFWRTVAVVDAE-DRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHT 379
Query: 392 GDLAVKHPDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 449
GD+ D Y+ R K++I +GGEN+ EVE L HP + +A V+ PD +W
Sbjct: 380 GDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWS 439
Query: 450 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHL 508
E+ A KP + A+ +++F + + Y PK VVF ALPK A G I +
Sbjct: 440 EAIKAVCVCKP-----GESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAA 494
Query: 509 LRAKAKEMG 517
++ + G
Sbjct: 495 VKTAHGQEG 503
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 181/374 (48%), Gaps = 38/374 (10%)
Query: 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVF------LWTLPMFHGNGW 208
+AL Y+SGTT PKGV+++H+G L++ + G N F L LPMFH
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKG--LVTSVAQQVDGENPNLYFHSDDVILCVLPMFH---- 281
Query: 209 SYTWSLAALCGTSI-----CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
Y + LCG + + + + I VT P ++ AIA +S E
Sbjct: 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS-ETEK 340
Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
L+++ V + AP L A++ K ++ YG+TE GP + + P
Sbjct: 341 YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPV 399
Query: 322 ETQARLNARQGVRTICLDGLDVIDART-NQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
++ A + +D D D+ + NQP GEI +RG +MKGYL NP A
Sbjct: 400 KSGACGTVVRNAEMKIVDP-DTGDSLSRNQP--------GEICIRGHQIMKGYLNNPAAT 450
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
E +GW H+GD+ + D+ + I DRLK++I G ++ E+E +L HP + + A
Sbjct: 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVA 510
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
VVA +E GE P AFV +K + EL + +DV +F ++ Y V F ++PK
Sbjct: 511 VVAMKEEAAGEVPVAFV-VKSKDSELSE----DDVKQFVSKQVVFYKRINKVFFTESIPK 565
Query: 499 SATGKIQKHLLRAK 512
+ +GKI + LRAK
Sbjct: 566 APSGKILRKDLRAK 579
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 160/360 (44%), Gaps = 41/360 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
++ +TSGTT K V + R Y ++ G + +L LP++H +G S
Sbjct: 167 SIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226
Query: 216 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 275
T + + A+ + T I +TH P LN + + N+ +
Sbjct: 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY----NLQKILLG 282
Query: 276 GAPPPPSLLFAMSQKGFRITHTYGLTE-----LTGPASVCAWKPEWDSLPFETQARLNAR 330
GA +++ Q I +++G+TE LT + +P+ +P
Sbjct: 283 GAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSAN------- 335
Query: 331 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 390
+D + P + + GE++++G+ VM GYL P F NG+F+
Sbjct: 336 -------------VDVKIKNP---NKEGHGELMIKGANVMNGYLY-PTDLTGTFENGYFN 378
Query: 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 450
+GD+A + Y+ I DR KD+IISGGENI ++E V P + +A V PD+ WG+
Sbjct: 379 TGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438
Query: 451 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLL 509
P + E+D + K +L +SK + Y VPK LP ++TGK+Q++ L
Sbjct: 439 VPKLYFV--SESD-ISKAQLIAYLSK----HLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 180/375 (48%), Gaps = 40/375 (10%)
Query: 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVF------LWTLPMFHGNGW 208
+AL Y+SGTT PKGV+++H+G L++ + G N F L LPMFH
Sbjct: 181 VALPYSSGTTGLPKGVMLTHKG--LITSVAQQVDGDNPNLYFHSEDVILCVLPMFH---- 234
Query: 209 SYTWSLAALCGTSI-----CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 263
Y + LCG + + + ++ I + V+ P V+ +IA SP+
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK-SPDLDK 293
Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPF 321
L+++ + + GAP L + K R+ YG+TE GP V A + PF
Sbjct: 294 HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGP--VLAMCLAFAKEPF 350
Query: 322 ETQARLNARQGVRTICLDG-LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
+ + T+ + + ++D T +P + GEI +RG +MKGYL +P+A
Sbjct: 351 DIKP-----GACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEAT 403
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
GW H+GD+ D+ + I DRLK++I G ++ E+E +L HP + +AA
Sbjct: 404 SRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAA 463
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAED-VSKFCRAKMPSYWVPKSVVF-AALP 497
VV DE GE P AFV + +K + ED + ++ ++ Y K V F A+P
Sbjct: 464 VVGLKDEDAGEVPVAFVV------KSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIP 517
Query: 498 KSATGKIQKHLLRAK 512
K+ +GKI + L+ K
Sbjct: 518 KAPSGKILRKNLKEK 532
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
T +I +G + D+ + AR I + G+P +++ PP ED + A + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
TSGTT PK ++ R A L + G+ G V L +P++H G+ A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
L GT + + + + VT A P L+A+A A+ + L L ++ +V A
Sbjct: 221 LDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
GA P ++L + Q G ++ + YG TE + K + P F ++ R+ G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
G+D I A + GE+++ S GYL P+A E +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPEATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
A V + L + A+ + FCR +++ + PK + LPK+A K+ + L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
T +I +G + D+ + AR I + G+P +++ PP ED + A + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
TSGTT PK ++ R A L + G+ G V L +P++H G+ A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
L GT + + + + VT A P L+A+A A+ + L L ++ +V A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
GA P ++L + Q G ++ + YG TE + K + P F ++ R+ G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
G+D I A + GE+++ S GYL P+A E +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
A V + L + A+ + FCR +++ + PK + LPK+A K+ + L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
T +I +G + D+ + AR I + G+P +++ PP ED + A + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
TSGTT PK ++ R A L + G+ G V L +P++H G+ A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
L GT + + + + VT A P L+A+A A+ + L L ++ +V A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
GA P ++L + Q G ++ + YG TE + K + P F ++ R+ G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
G+D I A + GE+++ S GYL P+A E +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
A V + L + A+ + FCR +++ + PK + LPK+A K+ + L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
T +I +G + D+ + AR I + G+P +++ PP ED + A + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
TSGTT PK ++ R A L + G+ G V L +P++H G+ A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
L GT + + + + VT A P L+A+A A+ + L L ++ +V A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
GA P ++L + Q G ++ + YG TE + K + P F ++ R+ G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
G+D I A + GE+++ S GYL P+A E +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
A V + L + A+ + FCR +++ + PK + LPK+A K+ + L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 195/420 (46%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
T +I +G + D+ + AR I + G+P +++ PP ED + A + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
TSGTT PK ++ R A L + G+ G V L +P++H G+ A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
L GT + + + + VT A P L+A+A A+ + L L ++ +V A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
GA P ++L + Q G ++ + YG TE + K + P F ++ R+ G
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
G+D I A + GE+++ S GYL P+A E +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
A V + L + A+ + FCR +++ + PK + LPK+A K+ + L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 173/394 (43%), Gaps = 44/394 (11%)
Query: 126 ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG- 184
ARGA+ E + GDP YTSGTT PKG V+ R A +L+
Sbjct: 143 ARGAVP-EDGADDGDPALVV-------------YTSGTTGPPKGAVIPRR-ALATTLDAL 187
Query: 185 ALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSI-CLRQVTAKAVYTAIATHGVTH 243
A W V + LP+FH +G G S+ L + + + + G T
Sbjct: 188 ADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATM 246
Query: 244 FCAAPVVLNAIANASPEDTILPLTNV---VNVNTAGAPPPPSLLFAMSQKGFRITHTYGL 300
P + + IA P D L + V+ + A P + G R+ YG+
Sbjct: 247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGM 306
Query: 301 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV-IDARTNQPVPA-DGKT 358
TE SV A D P R G + L G+++ + P+ A DG++
Sbjct: 307 TETLMNTSVRA-----DGEP---------RAGTVGVPLPGVELRLVEEDGTPIAALDGES 352
Query: 359 IGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDR-LKDVIISG 416
+GEI +RG + YL P A AF +G+F +GD+AV+ PD Y+ I R D+I SG
Sbjct: 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSG 412
Query: 417 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476
G I + E+E L HP V EAAV PD GE A++ A G LA+ V+
Sbjct: 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVA- 471
Query: 477 FCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 509
A++ + P+ V + A+P++ GKI K L
Sbjct: 472 ---ARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 192/420 (45%), Gaps = 39/420 (9%)
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP-EDEWQSIA----LGY 159
T +I +G + D+ + AR I + G+P +++ PP ED + A + Y
Sbjct: 103 TAAVIAVGRQVADAIFQSGSGAR-IIFLGDLVRDGEP-YSYGPPIEDPQREPAQPAFIFY 160
Query: 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-A 216
TSGTT PK ++ R A L + G+ G V L P++H G+ A A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALA 220
Query: 217 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTA 275
L GT + + + + VT A P L+A+A A+ + L L ++ +V A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 276 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQG 332
GA P ++L + Q G ++ + YG TE K + P F ++ R+ G
Sbjct: 281 GATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRIVRIGG 339
Query: 333 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFHS 391
G+D I A + GE+++ S GYL P+A E +GW+ +
Sbjct: 340 -------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
Query: 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 451
D+AV P+ + I R+ D IISGGENI E+E+VL P V E V+ D+RWG+S
Sbjct: 384 SDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 452 PCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHLL 509
A V + L + A+ + FCR +++ + PK + LPK+A K+ + L
Sbjct: 444 VTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/500 (25%), Positives = 202/500 (40%), Gaps = 57/500 (11%)
Query: 33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI----VDQEFFSLA 88
+ P VP + G AG + I++ +T + + L + + ++ V QE ++A
Sbjct: 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA 164
Query: 89 EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
E + ++K +++ ++SCD L A +ETG E +
Sbjct: 165 SECPSL-------RIK----LLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEAS---- 209
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 208
A+ +TSGT+ PK S+ L + A W + + +WT+ GW
Sbjct: 210 -------AIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG-WTGLQASDIMWTI---SDTGW 258
Query: 209 SYT--------WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
W+L A C L + + ++++ + AP+V +
Sbjct: 259 ILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLS 317
Query: 261 DTILP-LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 319
P L N V V + P +L +Q G I +YG TE TG + +
Sbjct: 318 SYKFPHLQNCVTVGESLLPE--TLENWRAQTGLDIRESYGQTE-TGLTCMVS-------- 366
Query: 320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV--MRGSCVMKGYLKNP 377
+T G C D + +ID + N P IG V +R + GY+ NP
Sbjct: 367 --KTMKIKPGYMGTAASCYD-VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 437
++ GD +K D Y + R D+I S G I EVE L HP V+E
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVE 483
Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-L 496
AV++ PD GE AFV L + D +L +++ + ++ Y P+ + F L
Sbjct: 484 TAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNL 543
Query: 497 PKSATGKIQKHLLRAKAKEM 516
PK+ TGKIQ+ LR K +M
Sbjct: 544 PKTVTGKIQRAKLRDKEWKM 563
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/500 (25%), Positives = 202/500 (40%), Gaps = 57/500 (11%)
Query: 33 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI----VDQEFFSLA 88
+ P VP + G AG + I++ +T + + L + + ++ V QE ++A
Sbjct: 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA 164
Query: 89 EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
E + ++K +++ ++SCD L A +ETG E +
Sbjct: 165 SECPSL-------RIK----LLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEAS---- 209
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 208
A+ +TSGT+ PK S+ L + A W + + +WT+ GW
Sbjct: 210 -------AIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG-WTGLQASDIMWTI---SDTGW 258
Query: 209 SYT--------WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 260
W+L A C L + + ++++ + AP+V +
Sbjct: 259 ILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLS 317
Query: 261 DTILP-LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 319
P L N V V + P +L +Q G I +YG TE TG + +
Sbjct: 318 SYKFPHLQNCVTVGESLLPE--TLENWRAQTGLDIRESYGQTE-TGLTCMVS-------- 366
Query: 320 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV--MRGSCVMKGYLKNP 377
+T G C D + +ID + N P IG V +R + GY+ NP
Sbjct: 367 --KTMKIKPGYMGTAASCYD-VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 437
++ GD +K D Y + R D+I S G I EVE L HP V+E
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVE 483
Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-L 496
AV++ PD GE AFV L + D +L +++ + ++ Y P+ + F L
Sbjct: 484 TAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNL 543
Query: 497 PKSATGKIQKHLLRAKAKEM 516
PK+ TGKIQ+ LR K +M
Sbjct: 544 PKTVTGKIQRAKLRDKEWKM 563
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 193/441 (43%), Gaps = 43/441 (9%)
Query: 98 NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
N + KL I+I D D + + Y L G E+ + P D ++
Sbjct: 138 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH------LPPGFNEYDFVPESFDRDKT 191
Query: 155 IALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
IAL +SG+T PKGV + HR A + S I+G + L +P HG G
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251
Query: 211 TWSLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
T +CG + L + ++ ++ + + P + + A ++ D L+N+
Sbjct: 252 TLGYL-ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNL 309
Query: 270 VNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
+ + GAP + A++++ F I YGLTE T S PE D P
Sbjct: 310 HEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPEGDDKPGAVG-- 363
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFA 385
+ + V+D T + + + + GE+ +RG +M GY+ NP+A N
Sbjct: 364 -------KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDK 414
Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
+GW HSGD+A D + I DRLK +I G ++ E+E +L HP + +A V PD
Sbjct: 415 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPD 474
Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
+ GE P A V L+ +K + S+ AK + VVF +PK TGK+
Sbjct: 475 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL 530
Query: 505 QKHLLRA---KAKEMGPVKMI 522
+R KAK+ G K++
Sbjct: 531 DARKIREILIKAKKGGKSKLV 551
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 167/377 (44%), Gaps = 33/377 (8%)
Query: 150 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 205
D + +AL +SG+T PKGV ++H S I+G ++ G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 206 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
G T +CG + L + + + + T+ P + AI N S
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLF-AILNKSELLNKY 306
Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
L+N+V + + GAP + A++++ G R YGLTE T S PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
+ + + L VID T + + + + GE+ ++G +MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
+E GW H+GD+ + + I DRLK +I G + E+E VL HP + +A
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
V PD GE P A V L+ + +K + S+ AK + V F +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 499 SATGKIQKHLLRAKAKE 515
TGKI +R K+
Sbjct: 527 GLTGKIDGRAIREILKK 543
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 192/440 (43%), Gaps = 43/440 (9%)
Query: 98 NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
N + KL I+I D D + + Y L G E+ + P D ++
Sbjct: 138 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFV------TSHLPPGFNEYDFVPESFDRDKT 191
Query: 155 IALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
IAL +SG+T PKGV + HR A + S I+G + L +P HG G
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251
Query: 211 TWSLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
T +CG + L + ++ ++ + + P + + A ++ D L+N+
Sbjct: 252 TLGYL-ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNL 309
Query: 270 VNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
+ + GAP + A++++ F I YGLTE T S PE D P
Sbjct: 310 HEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPEGDDKPGAVG-- 363
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFA 385
+ + V+D T + + + + GE+ +RG +M GY+ NP+A N
Sbjct: 364 -------KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDK 414
Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
+GW HSGD+A D + I DRLK +I G ++ E+E +L HP + +A V PD
Sbjct: 415 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPD 474
Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
+ GE P A V L+ +K + S+ AK + VVF +PK TGK+
Sbjct: 475 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL 530
Query: 505 QKHLLRA---KAKEMGPVKM 521
+R KAK+ G K+
Sbjct: 531 DARKIREILIKAKKGGKSKL 550
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 192/440 (43%), Gaps = 43/440 (9%)
Query: 98 NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
N + KL I+I D D + + Y L G E+ + P D ++
Sbjct: 143 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFV------TSHLPPGFNEYDFVPESFDRDKT 196
Query: 155 IALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
IAL +SG+T PKGV + HR A + S I+G + L +P HG G
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 256
Query: 211 TWSLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
T +CG + L + ++ ++ + + P + + A ++ D L+N+
Sbjct: 257 TLGYL-ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNL 314
Query: 270 VNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
+ + GAP + A++++ F I YGLTE T S PE D P
Sbjct: 315 HEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPEGDDKPGAVG-- 368
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFA 385
+ + V+D T + + + + GE+ +RG +M GY+ NP+A N
Sbjct: 369 -------KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDK 419
Query: 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 445
+GW HSGD+A D + I DRLK +I G ++ E+E +L HP + +A V PD
Sbjct: 420 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPD 479
Query: 446 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 504
+ GE P A V L+ +K + S+ AK + VVF +PK TGK+
Sbjct: 480 DDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL 535
Query: 505 QKHLLRA---KAKEMGPVKM 521
+R KAK+ G K+
Sbjct: 536 DARKIREILIKAKKGGKSKL 555
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 166/377 (44%), Gaps = 33/377 (8%)
Query: 150 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 205
D + +AL +SG+T PKGV ++H S I+G ++ G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 206 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
G T +CG + L + + + + T P + AI N S
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
L+N+V + + GAP + A++++ G R YGLTE T S PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
+ + + L VID T + + + + GE+ ++G +MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
+E GW H+GD+ + + I DRLK +I G + E+E VL HP + +A
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
V PD GE P A V L+ + +K + S+ AK + V F +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 499 SATGKIQKHLLRAKAKE 515
TGKI +R K+
Sbjct: 527 GLTGKIDGRAIREILKK 543
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 166/377 (44%), Gaps = 33/377 (8%)
Query: 150 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 205
D + +AL +SG+T PKGV ++H S I+G ++ G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 206 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 264
G T +CG + L + + + + T P + AI N S
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 265 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 320
L+N+V + + GAP + A++++ G R YGLTE T S PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
+ + + L VID T + + + + GE+ ++G +MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 381 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
+E GW H+GD+ + + I DRLK +I G + E+E VL HP + +A
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 498
V PD GE P A V L+ + +K + S+ AK + V F +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 499 SATGKIQKHLLRAKAKE 515
TGKI +R K+
Sbjct: 527 GLTGKIDGRAIREILKK 543
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 188/439 (42%), Gaps = 41/439 (9%)
Query: 98 NSEGKLKTPHLIVIGDESCDSKQLE--YALARGAIEYEKFLETGDPEFAWKPPE-DEWQS 154
N + KL I+I D D + + Y L G E+ + P D ++
Sbjct: 143 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFV------TSHLPPGFNEYDFVPESFDRDKT 196
Query: 155 IALGY-TSGTTASPKGVVVSHRG-AYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSY 210
IAL +SG+T PKGV + HR A S I+G + L +P HG G
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFT 256
Query: 211 TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVV 270
T + + + + ++ + + P + + +A ++ D L+N+
Sbjct: 257 TLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDK-YDLSNLH 315
Query: 271 NVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 327
+ + GAP + A++++ F I YGLTE T S P+ D P
Sbjct: 316 EIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETT---SAILITPKGDDKPGAVG--- 368
Query: 328 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFAN 386
+ + V+D T + + + + GE+ +RG +M GY+ NP+A N +
Sbjct: 369 ------KVVPFFEAKVVDLDTGKTLGVNQR--GELSVRGPMIMSGYVNNPEATNALIDKD 420
Query: 387 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 446
GW HSGD+A D + I DRLK +I G ++ E+E +L HP + +A V PD+
Sbjct: 421 GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDD 480
Query: 447 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 505
GE P A V L+ +K + S+ AK + VVF +PK TGK+
Sbjct: 481 DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKLD 536
Query: 506 KHLLRA---KAKEMGPVKM 521
+R KAK+ G K+
Sbjct: 537 ARKIREILIKAKKGGKSKL 555
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 30/377 (7%)
Query: 142 EFAWKP-PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 200
+F P P DE L + GTT +PK + +H Y I + +L +
Sbjct: 175 DFTATPSPADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAI 232
Query: 201 PMFHGNGWSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS 258
P H S SL GT + +A + I H V P ++ A
Sbjct: 233 PAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQAL 292
Query: 259 PE-DTILPLTNVVNVNTAGAPPPPSLLFAM-SQKGFRITHTYGLTELTGPASVCAWKPEW 316
E ++ L ++ + GA +L + ++ G ++ +G+ E G +
Sbjct: 293 IEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE--GLVNYTRLD--- 347
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
++ ++ QG D + V DA N P+P +G ++ RG +GY K+
Sbjct: 348 -----DSAEKIIHTQGYPMCPDDEVWVADAEGN-PLPQ--GEVGRLMTRGPYTFRGYYKS 399
Query: 377 PKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 435
P+ N AF ANG++ SGDL P+ YI ++ R KD I GGE I++ E+E +L HP V
Sbjct: 400 PQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAV 459
Query: 436 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSV-VF 493
+ AA+V+ DE GE CA++ +K + A V +F R + + + +P V
Sbjct: 460 IYAALVSMEDELMGEKSCAYLVVK-------EPLRAVQVRRFLREQGIAEFKLPDRVECV 512
Query: 494 AALPKSATGKIQKHLLR 510
+LP +A GK+ K LR
Sbjct: 513 DSLPLTAVGKVDKKQLR 529
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 166/378 (43%), Gaps = 43/378 (11%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 218
YT GTT PKGV ++H +L A+ G++ + P FH + +
Sbjct: 187 YTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVG 246
Query: 219 GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA- 277
+ + + I + T A P LN + N + + V GA
Sbjct: 247 NEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306
Query: 278 PPPPSL------LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN--A 329
P P+L L A R+ H ++ G C P + P RL+
Sbjct: 307 PVAPALVEKLLKLAAEKCNNPRLRHN----QIWGXTEAC---PXVTTNP---PLRLDKST 356
Query: 330 RQGVRTICLDGLDVIDARTNQPVPADGKTIG-----EIVMRGSCVMKGYLKNPKANEEAF 384
QGV ++ L VI DG+ +G EIV+RG + KGY K K N+E +
Sbjct: 357 TQGVPXSDIE-LKVISLE-------DGRELGVGESGEIVIRGPNIFKGYWKREKENQECW 408
Query: 385 -----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 439
+F +GD+ + ++ +DR+K+VI G I+ E+E +L H V + A
Sbjct: 409 WYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVA 468
Query: 440 VVARPDERWGESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVFA-ALP 497
V+ +PDE GE P AF+ LKPE +GK+ ED+ ++ R ++ Y + V F LP
Sbjct: 469 VIGKPDEEAGEVPKAFIVLKPEY----RGKVDEEDIIEWVRERISGYKRVREVEFVEELP 524
Query: 498 KSATGKIQKHLLRAKAKE 515
++A+GK+ + LLR K E
Sbjct: 525 RTASGKLLRRLLREKEAE 542
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/424 (26%), Positives = 184/424 (43%), Gaps = 39/424 (9%)
Query: 100 EGKLKTPHLIVIGDESCD--SKQLEYALARGAIEYEKFLETGDPEFAWKPP--EDEWQSI 155
+ KL IVI D D KQ Y+ E L G E+ + P + E +
Sbjct: 174 QKKLPIIQKIVILDSREDYMGKQSMYSFI------ESHLPAGFNEYDYIPDSFDRETATA 227
Query: 156 ALGYTSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTW 212
+ +SG+T PKGV ++H+ + S ++G + L +P HG G T
Sbjct: 228 LIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTL 287
Query: 213 SLAALCGTSICLRQVTAKAVY-TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 271
CG I L + ++ ++ + + P + + A ++ D L+N+
Sbjct: 288 GYLT-CGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDK-YDLSNLHE 345
Query: 272 VNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 328
+ + GAP + A++++ F+ I YGLTE T +++ D P
Sbjct: 346 IASGGAPLAKEVGEAVAKR-FKLPGIRQGYGLTETT--SAIIITPRGRDDKPGACG---- 398
Query: 329 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 387
+ + ++D T + + + + GE+ ++G +MKGY+ NP+A +G
Sbjct: 399 -----KVVPFFSAKIVDLDTGKTLGVNQR--GELCVKGPMIMKGYVNNPEATSALIDKDG 451
Query: 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 447
W HSGD+A D Y I DRLK +I G + E+E +L HP + +A V PD
Sbjct: 452 WLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPD 511
Query: 448 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQK 506
GE P A V L+ E + + ++ + V+ A S + V F +PK TGKI
Sbjct: 512 AGELPAAVVVLE-EGKTMTEQEVMDYVAGQVTA---SKRLRGGVKFVDEVPKGLTGKIDA 567
Query: 507 HLLR 510
+R
Sbjct: 568 RKIR 571
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 167/371 (45%), Gaps = 30/371 (8%)
Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
P DE L + G+T +PK + +H A I G+N L LP H
Sbjct: 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246
Query: 208 WSYTWSLAALC--GTSICLRQVTAKAVYTAIATHGVTHFCAAP--VVLNAIANASPEDTI 263
S +L L G + ++ I H V P V++ A +D I
Sbjct: 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQI 306
Query: 264 LPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFE 322
L + GA P SL + + ++ +G+ E G + + D F
Sbjct: 307 QSLKLL---QVGGASFPESLARQVPEVLNCKLQQVFGMAE--GLVNYTRLD-DSDEQIFT 360
Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 382
TQ R + D + ++D + + VP +G+ IG + RG GY ++P+ N +
Sbjct: 361 TQGRPISSD-------DEIKIVDEQYRE-VP-EGE-IGMLATRGPYTFCGYYQSPEHNSQ 410
Query: 383 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 441
F + +++SGDL + PD + + R+KD I GGE I+S E+EK++ LHP V+ AA+V
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV 470
Query: 442 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSA 500
A DE++GE CAF+ + EL L + + A+ Y +P + + +LP +A
Sbjct: 471 AIVDEQFGEKSCAFIVSR--NPELKAVVLRRHLMELGIAQ---YKLPDQIKLIESLPLTA 525
Query: 501 TGKIQKHLLRA 511
GK+ K LR+
Sbjct: 526 VGKVDKKQLRS 536
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 157/366 (42%), Gaps = 44/366 (12%)
Query: 45 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
+GA GAV IN RL A V+FILS + S VVI + + + + + A ++
Sbjct: 72 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQAD---- 123
Query: 105 TPHLIV--IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 162
P + IG +S + R A E +E G + ++ + YTSG
Sbjct: 124 PPGTVTDWIGADSLAER------LRSAAADEPAVECGGDD-----------NLFIMYTSG 166
Query: 163 TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TS 221
TT PKGVV +H + + + A + L LPMFH + T +A+ G T
Sbjct: 167 TTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSAMRGVTL 225
Query: 222 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 281
I + Q A V++ I V A P +LN + PE L + T GAP P
Sbjct: 226 ISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAPMPE 284
Query: 282 SLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 341
+L+ + K + Y LTE G ++ L E R G T+ D
Sbjct: 285 ALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRATMFTD-- 333
Query: 342 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 401
+ R + V + GE+V++ ++K Y P+A +AF NGWF +GD+ +
Sbjct: 334 --VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEG 390
Query: 402 YIEIKD 407
Y+ IKD
Sbjct: 391 YLYIKD 396
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 160/373 (42%), Gaps = 42/373 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
A+ YTSGTT KG +SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
G+ I L + + A T P + SP T T +
Sbjct: 219 LFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQ-SPRLT-KETTGHXRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
+G+ P L A + + G + YG TE S P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAKTGHAVLERYGXTETNXNTS----NPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
G L G+ V D T + +P IG I ++G V KGY + P+ + F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
+ G+F +GDL Y+ I R KD++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
+GE A V ++ + +D+ ++ + ++ + PK V+F LP++ GK
Sbjct: 434 HADFGEGVTA-VVVRDKGATIDEAQVLHGLD----GQLAKFKXPKKVIFVDDLPRNTXGK 488
Query: 504 IQKHLLRAKAKEM 516
+QK++LR K++
Sbjct: 489 VQKNVLRETYKDI 501
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 131/485 (27%), Positives = 196/485 (40%), Gaps = 59/485 (12%)
Query: 43 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAN---- 98
A GA AG V N L ++L+H+ + VI +AL+ E +
Sbjct: 89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQL 148
Query: 99 --SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 156
S+ + P L + +E D+ A TG + A+ W
Sbjct: 149 IVSQPRESEPRLAPLFEELIDAAAPAAKAA----------ATGCDDIAF------WL--- 189
Query: 157 LGYTSGTTASPKGVVVSHRGAY-LMSLNGALIWGMNEGAVFLWTLPMFH----GNGWSYT 211
Y+SG+T PKG V +H Y L I G+ E V +F GNG ++
Sbjct: 190 --YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 212 WSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVV 270
S+ A T+I + + TA A++ + H T F P L A SP +
Sbjct: 248 LSVGA---TAILMAERPTADAIFARLVEHRPTVFYGVPT-LYANMLVSPNLPARADVAIR 303
Query: 271 NVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 330
+AG P + G R T +G L G S + L R A
Sbjct: 304 ICTSAGEALPREI-------GERFTAHFGCEILDGIGST-------EMLHIFLSNRAGAV 349
Query: 331 Q-GVRTICLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGW 388
+ G + G ++ + VP DG+ +G++ ++G Y N + + F W
Sbjct: 350 EYGTTGRPVPGYEIELRDEAGHAVP-DGE-VGDLYIKGPSAAVMYWNNREKSRATFLGEW 407
Query: 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
SGD + P+ R D++ G+ +S VEVE VL H VLEAAVV D
Sbjct: 408 IRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGG 466
Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKH 507
AFV LK E + LAE++ F + ++ + P+ +VF LPK+ATGKIQ+
Sbjct: 467 LVKTRAFVVLKREFAPSE--ILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRF 524
Query: 508 LLRAK 512
LR +
Sbjct: 525 KLREQ 529
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 156/373 (41%), Gaps = 39/373 (10%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
A+ YTSGTT G ++SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
G+ I L + +A T P + SP T T + +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
+G+ P L A + + G + YG+TE ++ P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
G L G+ V D T +P IG I + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
+ G+F +GDL Y+ I R D++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
+GE AFV L E + LAE++ F ++ + +P V+F LP++ G
Sbjct: 434 HADFGEGVTAFVVLXREFAPSE--ILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGA 491
Query: 504 IQKHLLRAKAKEM 516
+Q ++LR ++
Sbjct: 492 VQXNVLRETYXDI 504
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 418
G ++ RG ++GY K + N +F +G++ +GD+ D YI ++ R KD I GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 419 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 478
+++ EVE L HP V +AA+V+ PD+ GE C F+ + EA + A ++ F
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK------AAELKAFL 492
Query: 479 RAK-MPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
R + + +Y +P V F + P++ GK+ K LR E
Sbjct: 493 RERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 360 GEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 418
G ++ RG ++GY K + N +F +G++ +GD+ D YI ++ R KD I GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 419 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 478
+++ EVE L HP V +AA V+ PD+ GE C F+ + EA + A ++ F
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPK------AAELKAFL 492
Query: 479 RAK-MPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 515
R + + +Y +P V F + P++ GK+ K LR E
Sbjct: 493 RERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 168/407 (41%), Gaps = 44/407 (10%)
Query: 127 RGAIEYEKFLETGDPEFAWKPPE--DEWQSIALGY-TSGTTASPKGVVVSHRGAY-LMSL 182
G I++ K LE P F E + + I L Y +SGT PK +V H Y L +
Sbjct: 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHI 254
Query: 183 NGALIWGMNEGAVFLWTLPMFHGNGWS-------YTWSLAALCGTSICLRQVTAKAVYTA 235
A W E +T+ +GW Y +A + AK +
Sbjct: 255 LTAKYWQNVEDDGLHYTVA---DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK 311
Query: 236 IATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFR 293
+ +GVT FCA P + + ED + + + AG P P + + G +
Sbjct: 312 ASKYGVTTFCAPPTIYRFLIK---EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIK 368
Query: 294 ITHTYGLTELTGPASVCAW-KPEWDSLPFET---QARLNARQG-VRTICLDGLDVIDART 348
+ +G TE + W +P+ S+ T + L R G + + +G VI+
Sbjct: 369 LMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINT-- 426
Query: 349 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDR 408
+GK +G V G K+P+ EE + +G++H+GD+A D Y+ R
Sbjct: 427 -----MEGKPVGLFVHYG--------KDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGR 473
Query: 409 LKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG 468
D+I + G + EVE L HP VLE A+ PD G+ A + L + D
Sbjct: 474 ADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSD-- 531
Query: 469 KLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAK 514
L ++ + Y P+ + F LPK+ +GKI++ +R K +
Sbjct: 532 SLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 150/373 (40%), Gaps = 42/373 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
A+ YTSGTT G ++SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
G+ I L + +A T P + SP T T + +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
+G+ P L A + + G + YG+TE ++ P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
G L G+ V D T +P IG I + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
+ G+F +GDL Y+ I R D++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
+GE AFV L E V ++ + +P V+F LP++ G
Sbjct: 434 HADFGEGVTAFVVLXREF-----APSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGA 488
Query: 504 IQKHLLRAKAKEM 516
+Q ++LR ++
Sbjct: 489 VQXNVLRETYXDI 501
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 154/373 (41%), Gaps = 42/373 (11%)
Query: 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 215
A+ YTSGTT G ++SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 216 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 274
G+ I L + +A T P + SP T T + +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 275 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 327
+G+ P L A + + G + YG+TE ++ P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 328 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
G L G+ V D T +P IG I + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 386 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 444
+ G+F +GDL Y+ I R D++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 445 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 503
+GE A V ++ +D+ ++ + ++ + +P V+F LP++ G
Sbjct: 434 HADFGEGVTA-VVVRDXGATIDEAQVLHGLD----GQLAXFXMPXXVIFVDDLPRNTMGA 488
Query: 504 IQKHLLRAKAKEM 516
+Q ++LR ++
Sbjct: 489 VQXNVLRETYXDI 501
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 111/425 (26%), Positives = 172/425 (40%), Gaps = 84/425 (19%)
Query: 148 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-----WGMNEGAVFLWTLPM 202
P D + L YTSG+T +PKGV S G YL+ GAL+ + ++ VF +
Sbjct: 258 PVDSEDPLFLLYTSGSTGAPKGVQHSTAG-YLL---GALLTMRYTFDTHQEDVFFTAGDI 313
Query: 203 FHGNGWSYTWSLAALCGTSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANA 257
G +Y L G + + + T + I H VT F AP L + A
Sbjct: 314 GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRA 373
Query: 258 SPEDTIL---PLTNVVNVNTAGAPPPPSLLFAMSQKGFR----ITHTYGLTE----LTGP 306
D+ + L ++ + + G P + S+K + I TY TE L P
Sbjct: 374 G--DSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 431
Query: 307 --ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 364
V KP S PF G+ + LD P G+ +
Sbjct: 432 LAGGVTPMKPGSASFPF---------FGIDAVVLD-------------PNTGEELNTSHA 469
Query: 365 RGSCVMKG--------YLKNPKANEEAFAN---GWFHSGDLAVKHPDNYIEIKDRLKDVI 413
G +K KN + + N G++ +GD A K D YI I R+ DV+
Sbjct: 470 EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV 529
Query: 414 ISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA-------DELD 466
G +S+ E+E + P+V E AVV D+ G++ AFV LK ++ DEL
Sbjct: 530 NVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL- 588
Query: 467 KGKLAEDVSKF----CRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR----AKAKEMG 517
+D+ K R + + PK ++ LPK+ +GKI + +LR ++ ++G
Sbjct: 589 -----QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLG 643
Query: 518 PVKMI 522
V +
Sbjct: 644 DVSTL 648
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 146/376 (38%), Gaps = 56/376 (14%)
Query: 159 YTSGTTASPKGVVVSHR---GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSL 214
+TSG+T PKGV+ HR G YL G G VFL P+ W ++ L
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPV----SWDAFGLEL 272
Query: 215 -AALCGTSICLRQVTAK----AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 269
AL + C+ Q + +A HGVT + + N + + PE V
Sbjct: 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGV 328
Query: 270 VNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLPFETQ 324
T G P P R+ + YG E T +V A +LP
Sbjct: 329 RYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVP 388
Query: 325 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 384
G R LD + PA +GE+ + G+ + GY+ P E F
Sbjct: 389 L-----AGKRAYVLD---------DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434
Query: 385 ---------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 435
+ +GDLA + D +E R D + G + EVE L HP V
Sbjct: 435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAV 494
Query: 436 LEAAVVARPDERWGESP-CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSVVF 493
+AAV+A+ D R G+ A+V A+ D A ++ + +P+Y VP + V
Sbjct: 495 RQAAVLAQ-DSRLGDKQLVAYVV----AERADAPPDAAELRRHVAEALPAYMVPVECVPV 549
Query: 494 AALPKSATGKIQKHLL 509
LP++ GK+ + L
Sbjct: 550 DELPRTPNGKLDRRAL 565
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 121/505 (23%), Positives = 199/505 (39%), Gaps = 51/505 (10%)
Query: 35 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
P VP A GAV + I + VA + +SS +VI E
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95 MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
++ N + LK P H+IV+ D +++ R + + +E PE +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
E + + YTSG+T PKGV+ + G YL+ + ++ + G ++ T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
G SY CG T++ V T + + H V AP + A+ A
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
+++ + +AG P P + ++ + T+ TE G +
Sbjct: 372 IEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
P L A R ++D N+ P +G T G +V+ S G +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
+ E F +F SGD A + D Y I R+ DV+ G + + E+E L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
HP + EAAVV P G++ A+VTL E +L +V + R ++ P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
+ + +LPK+ +GKI + +LR A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 198/505 (39%), Gaps = 51/505 (10%)
Query: 35 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
P VP A GAV + I + VA + +SS +VI E
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95 MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
++ N + LK P H+IV+ D +++ R + + +E PE +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
E + + YTSG+T PKGV+ + G YL+ + ++ + G ++ T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
G SY CG T++ V T + + H V AP + A+ A
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
+++ + + G P P + ++ + T+ TE G +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
P L A R ++D N+ P +G T G +V+ S G +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
+ E F +F SGD A + D Y I R+ DV+ G + + E+E L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
HP + EAAVV P G++ A+VTL E +L +V + R ++ P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
+ + +LPK+ +GKI + +LR A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 121/505 (23%), Positives = 200/505 (39%), Gaps = 51/505 (10%)
Query: 35 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
P VP A GAV + I + VA + +SS +VI E + A
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE--GVRAGASIP 197
Query: 95 MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
++ N + LK P H+IV+ D +++ R + + +E PE +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
E + + YTSG+T PKGV+ + G YL+ + ++ + G ++ T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
G SY CG T++ V T + + H V AP + A+ A
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
+++ + + G P P + ++ + T+ TE G +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
P L A R ++D N+ P +G T G +V+ S G +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
+ E F +F SGD A + D Y I R+ DV+ G + + E+E L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
HP + EAAVV P G++ A+VTL E +L +V + R ++ P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
+ + +LPK+ +GKI + +LR A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 198/505 (39%), Gaps = 51/505 (10%)
Query: 35 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
P VP A GAV + I + VA + +SS +VI E
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95 MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
++ N + LK P H+IV+ D +++ R + + +E PE +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
E + + YTSG+T PKGV+ + G YL+ + ++ + G ++ T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
G SY CG T++ V T + + H V AP + A+ A
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
+++ + + G P P + ++ + T+ TE G +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
P L A R ++D N+ P +G T G +V+ S G +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
+ E F +F SGD A + D Y I R+ DV+ G + + E+E L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
HP + EAAVV P G++ A+VTL E +L +V + R ++ P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
+ + +LPK+ +GKI + +LR A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 110/482 (22%), Positives = 197/482 (40%), Gaps = 76/482 (15%)
Query: 45 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 104
G AGA ++ +L ++++L+ +++A ++ QE + E+A ++
Sbjct: 532 LGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE---MKEQAAELP--------Y 580
Query: 105 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTT 164
T + I D++ +Q DP A P + + + YTSGTT
Sbjct: 581 TGTTLFIDDQTRFEEQ-----------------ASDPATAIDPNDPAY----IMYTSGTT 619
Query: 165 ASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSIC 223
PKG + +H A + L + + ++ FL ++ + + +++ + + L +
Sbjct: 620 GKPKGNITTH--ANIQGLVKHVDYMAFSDQDTFL-SVSNYAFDAFTFDFYASMLNAARLI 676
Query: 224 LRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 279
+ + + + I V A + N + +A ED + L ++ + P
Sbjct: 677 IADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-EDWMKGLRCILFGGERASVP 735
Query: 280 PPSLLFAMSQKGFRITHTYGLTELT--GPASVCAWKPE-WDSLPFETQARLNARQGVRTI 336
+ G ++ + YG TE T A V P+ SLP + I
Sbjct: 736 HVRKALRIMGPG-KLINCYGPTEGTVFATAHVVHDLPDSISSLPIG-----------KPI 783
Query: 337 CLDGLDVIDARTN-QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF------ 389
+ +++ ++ QP A +GE+ + G V KGY+ +E F F
Sbjct: 784 SNASVYILNEQSQLQPFGA----VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETL 839
Query: 390 -HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
+GDLA PD IE R+ D + G I E+EK L +P V +A VVA E
Sbjct: 840 YRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESG 899
Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKH 507
S A++ + + AEDV + ++P+Y VP++ F LP + GK+ K
Sbjct: 900 DASINAYLVNRTQLS-------AEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKR 952
Query: 508 LL 509
LL
Sbjct: 953 LL 954
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 119/505 (23%), Positives = 197/505 (39%), Gaps = 51/505 (10%)
Query: 35 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
P VP A GAV + I + VA + +SS +VI E
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95 MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
++ N + LK P H+IV+ D +++ R + + +E PE +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
E + + YTSG+T PKGV+ + G YL+ + ++ + G ++ T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
G SY CG T++ V T + + H V AP + A+ A
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
+++ + + G P P + ++ + T+ TE G +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
P L A R ++D N+ P +G T G +V+ S G +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
+ E F +F SGD A + D Y I R+ DV+ G + + E+E L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
HP + EAAVV P G++ A+VTL E +L +V + R ++ P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
+ + +LPK+ +G I + +LR A
Sbjct: 595 VLHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 119/505 (23%), Positives = 197/505 (39%), Gaps = 51/505 (10%)
Query: 35 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
P VP A GAV + I + VA + +SS +VI E
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95 MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
++ N + LK P H+IV+ D +++ R + + +E PE +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
E + + YTSG+T PKGV+ + G YL+ + ++ + G ++ T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
G SY CG T++ V T + + H V AP + A+ A
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
+++ + + G P P + ++ + T+ TE G +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
P L A R ++D N+ P +G T G +V+ S G +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
+ E F +F SGD A + D Y I R+ DV+ G + + E+E L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
HP + EAAVV P G++ A+VTL E +L +V + ++ P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVEKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
+ + +LPK+ +GKI + +LR A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 119/505 (23%), Positives = 197/505 (39%), Gaps = 51/505 (10%)
Query: 35 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 94
P VP A GAV + I + VA + +SS +VI E
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--P 197
Query: 95 MEANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 148
++ N + LK P H+IV+ D +++ R + + +E PE +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAM 253
Query: 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGN 206
E + + YTSG+T PKGV+ + G YL+ + ++ + G ++ T +
Sbjct: 254 NAE-DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 207 GWSYTWSLAALCG-TSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPE 260
G SY CG T++ V T + + H V AP + A+ A
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 261 DTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 316
+++ + + G P P + ++ + T+ TE G +
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG----------F 421
Query: 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 376
P L A R ++D N+ P +G T G +V+ S G +
Sbjct: 422 MITPLPGAIELKAGSATRPFFGVQPALVD---NEGHPQEGATEGNLVITDS--WPGQART 476
Query: 377 PKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 429
+ E F +F SGD A + D Y I R+ DV+ G + + E+E L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 430 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK 489
HP + EAAVV P G++ A+VTL E +L +V + ++ P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVAKEIGPLATPD 594
Query: 490 SVVFA-ALPKSATGKIQKHLLRAKA 513
+ + +LPK+ +GKI + +LR A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 156/375 (41%), Gaps = 54/375 (14%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP-MFHGNGWSYTWSLA-- 215
+TSGTT PKGV +SH L+S W + + A + P M +S+ S+
Sbjct: 152 FTSGTTGQPKGVQISHDN--LLSFTN---WMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206
Query: 216 ----ALCGTSICL-RQVTA--KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 268
AL GT L +++ A K ++T IA V + + P + +A S + +
Sbjct: 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFAD-MAMLSDDFCQAKMPA 265
Query: 269 VVNVNTAGAPPPPSLLFAMSQKGF------RITHTYGLTELTGPASVCAWKPEWDSLPFE 322
+ + G L + ++K F +I + YG TE T S E +
Sbjct: 266 LTHFYFDGE----ELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM----VD 317
Query: 323 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTI-----GEIVMRGSCVMKGYLKNP 377
RL G D+ T + DGK + GEI++ G V KGYL NP
Sbjct: 318 NYTRLPI----------GYPKPDSPT-YIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNP 366
Query: 378 KANEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 433
+ EAF +H+GD+ DN + RL I G I +V + L P
Sbjct: 367 EKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
Query: 434 LVLEAAVVARPD-ERWGESPCAFVTLKPEADE-LDKG-KLAEDVSKFCRAKMPSYWVPKS 490
+V A V R + E ++ A++ +K E D+ +L + + + M SY +P
Sbjct: 427 MVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSK 486
Query: 491 VVFA-ALPKSATGKI 504
++ +LP + GKI
Sbjct: 487 FLYRDSLPLTPNGKI 501
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 142/362 (39%), Gaps = 38/362 (10%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE-GAVFLWTLPMFHGNGWSYTWSLAAL 217
YTSGTT +PKG ++ H+G + + + E + + F + W +L
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248
Query: 218 CGTSICLRQVTAKAVY--TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 275
I L+ V I +T P + + PE IL + ++ TA
Sbjct: 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTY---VVHLDPE-RILSIQTLI---TA 301
Query: 276 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 335
G+ PSL+ +K I + YG TE T A+ E A + Q
Sbjct: 302 GSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQ---- 356
Query: 336 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF------ 389
+ ++D N + + G+ GE+ + G + +GY K P+ + F + F
Sbjct: 357 -----IYIVDE--NLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKL 408
Query: 390 -HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 448
+GD A D IE R+ + + G + EVE +L H + E AV D +
Sbjct: 409 YKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 468
Query: 449 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAALPKSATGKIQKH 507
CA+ +K E + +F ++P+Y +P + +P ++ GKI +
Sbjct: 469 QPYLCAYFV-------SEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRK 521
Query: 508 LL 509
L
Sbjct: 522 QL 523
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 162/383 (42%), Gaps = 49/383 (12%)
Query: 149 EDEW----QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPM 202
+D+W ++ + YTSG+T +PKGV +S A L S + + ++ G +FL P
Sbjct: 136 QDQWVKEHETFYIIYTSGSTGNPKGVQIS--AANLQSFTDWICADFPVSGGKIFLNQAP- 192
Query: 203 FHGNGWSYTWSLAAL--C----GTSICLRQVTA---KAVYTAIATHGVTHFCAAP-VVLN 252
+S+ S+ L C GT C+ + K ++ + G+ + + P V
Sbjct: 193 -----FSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247
Query: 253 AIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVC 310
+ + +LP + G P S+ A+ ++ +I +TYG TE T +V
Sbjct: 248 CLMDPGFSQDLLPHADTFMF--CGEVLPVSVAKALLERFPKAKIFNTYGPTEAT--VAVT 303
Query: 311 AWKPEWDSLPFETQARLN-ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 369
+ + D + + A+ + +D QP+P K GEIV+ G V
Sbjct: 304 SVEITNDVISRSESLPVGFAKPDMNIFIMD-------EEGQPLPEGEK--GEIVIAGPSV 354
Query: 370 MKGYLKNPKANEEAF---ANGW-FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 425
+GYL P+ E+AF W + +GD D I + RL I G + E+
Sbjct: 355 SRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEI 413
Query: 426 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRAKMPS 484
E + V A V+ P + G + PE E +K +L + K A +P+
Sbjct: 414 EFHVRQSQYVRSAVVI--PYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPA 471
Query: 485 YWVPKSVVFA-ALPKSATGKIQK 506
Y +P+ ++ + +A GKI +
Sbjct: 472 YMIPRKFIYQDHIQMTANGKIDR 494
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 344 IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYI 403
I+ R P + +G I + G + GY + + +E A GW +GDL D Y+
Sbjct: 395 IEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYL 453
Query: 404 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 442
+ R+KD+II G NI ++E + P + +A
Sbjct: 454 YVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA 492
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 157 LGYTSGTTASPKGVVVSHR--GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 207
L YTSG+T P+GV+++HR A L +++ I + G + LP +H G
Sbjct: 180 LQYTSGSTRFPRGVIITHREVXANLRAISHDGI-KLRPGDRCVSWLPFYHDXG 231
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 159/393 (40%), Gaps = 43/393 (10%)
Query: 138 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 197
T +PE A K E+ + + YTSG+T +PKGV +++ + + + G VFL
Sbjct: 134 TPNPEHAVKGDENFY----IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 198 WTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLN-A 253
P + GT + + K ++ ++ + + + P
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 254 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR--ITHTYGLTE----LTGPA 307
+ AS +++LP N+ G P + + ++ + I +TYG TE +TG
Sbjct: 250 LMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIH 307
Query: 308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 367
++ SLP C ++ + + + DG+ GEIV+ G
Sbjct: 308 VTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGP 353
Query: 368 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYIE-----IKDRLKDVIISGGENIS 421
V GYL +P+ E+AF G+ A K D Y+E RL I G +
Sbjct: 354 SVSVGYLGSPELTEKAFT---MIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRME 410
Query: 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRA 480
E+E L V A +V P ++ + + P +K KL + K
Sbjct: 411 LEEIEHHLRACSYVEGAVIV--PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468
Query: 481 KMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 512
++P+Y +P+ ++ +++P + GK+ + L ++
Sbjct: 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/390 (22%), Positives = 157/390 (40%), Gaps = 43/390 (11%)
Query: 138 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 197
T +PE A K E+ + + YTSG+T +PKGV +++ + + + G VFL
Sbjct: 134 TPNPEHAVKGDENFY----IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 198 WTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLN-A 253
P + GT + + K ++ ++ + + + P
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 254 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR--ITHTYGLTE----LTGPA 307
+ AS +++LP N+ G P + + ++ + I +TYG TE +TG
Sbjct: 250 LMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIH 307
Query: 308 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 367
++ SLP C ++ + + + DG+ GEIV+ G
Sbjct: 308 VTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGP 353
Query: 368 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYIE-----IKDRLKDVIISGGENIS 421
V GYL +P+ E+AF G+ A K D Y+E RL I G +
Sbjct: 354 SVSVGYLGSPELTEKAFT---MIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRME 410
Query: 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRA 480
E+E L V A +V P ++ + + P +K KL + K
Sbjct: 411 LEEIEHHLRACSYVEGAVIV--PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468
Query: 481 KMPSYWVPKSVVF-AALPKSATGKIQKHLL 509
++P+Y +P+ ++ +++P + GK+ + L
Sbjct: 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 352 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG---------WFHSGDLAVKHPDNY 402
+P D +GEI ++ + V KGY P+ AFA + +GDL H +N
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450
Query: 403 IEIKDRLKDVIISGGENISSVEVEKVLYLHPL 434
+ + R+KD+II G+N ++E L PL
Sbjct: 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPL 482
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 144 AWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGAL--IWGMNEGAVFLWTL 200
+W+P + IA L YTSG+T PKGV VSH L +LN +E +F W L
Sbjct: 158 SWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL-LDNLNKIFTSFHXNDETIIFSW-L 215
Query: 201 PMFHGNG 207
P H G
Sbjct: 216 PPHHDXG 222
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 143/375 (38%), Gaps = 53/375 (14%)
Query: 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAAL 217
YTSGTT +PKGV V H + ++ + +L +FH + ++ W +
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL----LFHSLSFDFSVWEIWGA 237
Query: 218 CGTSICLRQV------TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNV 269
T L + T + I GVT P A+ A+ + L V
Sbjct: 238 FSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYV 297
Query: 270 VNVNTAGAPP---PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 326
+ P P + F + + R+ + YG+TE T + + + R
Sbjct: 298 IFGGEKLTAPMLRPWAKAFGLDRP--RLVNGYGITETTVFTTFEEITEAYLAQDASIIGR 355
Query: 327 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 386
G R + DG DV A G+T GE+ + G+ + +GYL+ P+ E F
Sbjct: 356 ALPSFGTRVVGDDGRDV----------APGET-GELWLSGAQLAEGYLRRPELTAEKFPE 404
Query: 387 ----------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 436
++ +GDL + PD + R I G I ++E + H V+
Sbjct: 405 VTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVV 464
Query: 437 EAAVVARP----DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSV 491
+A V R D R CA+V + A A ++ + +P+Y P + +
Sbjct: 465 DAVVTVREFKPGDLRL---VCAYVAREGSA------TTARELRNHIKTLLPAYMHPARYL 515
Query: 492 VFAALPKSATGKIQK 506
LP++ GK+ +
Sbjct: 516 PLPGLPRTVNGKVDR 530
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 95/277 (34%), Gaps = 57/277 (20%)
Query: 159 YTSGTTASPKGVVVSHR---GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS-- 213
+TSG+T PKGV+ HR G YL G G VFL P+ +W
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPV--------SWDAF 268
Query: 214 ----LAALCGTSICLRQVTAK----AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
AL + C+ Q + +A HGVT + + N + + PE
Sbjct: 269 GLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----A 324
Query: 266 LTNVVNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLP 320
V T G P P R+ + YG E T +V A +LP
Sbjct: 325 FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALP 384
Query: 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380
G R LD + PA +GE+ + G+ + GY+ P
Sbjct: 385 IGVPL-----AGKRAYVLD---------DDLKPAANGALGELYVAGAGLAHGYVSRPALT 430
Query: 381 EEAF---------ANGWFHSGDLAVKHPDNYIEIKDR 408
E F + +GDLA + D +E R
Sbjct: 431 AERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 135/365 (36%), Gaps = 55/365 (15%)
Query: 157 LGYTSGTTASPKGVVVS-HRGAYLMSLNGALIWGMNEGAVFLWTLPMF----------HG 205
L YTSG+T +PKGV VS H + G LI + ++ L + F H
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239
Query: 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 265
W LC + R + GVTH P +L+ PED P
Sbjct: 240 GEXFLAWRFG-LCAVT-GERLSXLDDLPRTFRELGVTHAGIVPSLLDQTG-LVPEDA--P 294
Query: 266 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 325
+ V P +++ S + + + YG TE+T S P+ D
Sbjct: 295 HLVYLGVGGEKXTPRTQQIWSSSDR-VALVNVYGPTEVTIGCSAGRILPDSD-------- 345
Query: 326 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTI-----GEIVMRGSCVMKGYLKNPKAN 380
T C+ G + D+ + P + + GE+V+ GS V GYL P A
Sbjct: 346 ---------TRCI-GHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAK 395
Query: 381 EEAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY-LHPLVLE 437
NG + +GD+ D+ I R + + G+ + EV +V+ L P ++
Sbjct: 396 GFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDID 455
Query: 438 AAVVARPDERWGESPCAFVTLKPEADELDKGKLA----------EDVSKFCRAKMPSYWV 487
VV G S V+ + +G+L + + C +P+Y V
Sbjct: 456 --VVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYXV 513
Query: 488 PKSVV 492
P ++
Sbjct: 514 PDFII 518
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 106/281 (37%), Gaps = 57/281 (20%)
Query: 149 EDEWQSIA-LGYTSGTTASPKGVVVSHRG----------AYLMSLNGALIWGMNEGAVFL 197
EDE+ S A L YTSG+T +P GVV SH+ Y +G I N A+
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDG--IPPPNS-ALVS 235
Query: 198 WTLPMFHGNGWSYTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNA 253
W LP +H G L G L + A + + F AAP
Sbjct: 236 W-LPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFSAAPNFAFE 294
Query: 254 IANASPED------------TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLT 301
+A D TIL + V T F + ++ R +YGL
Sbjct: 295 LAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIR--PSYGLA 352
Query: 302 ELTGPASVCAWKPEW--DSLPFETQARLNARQGVRTICLDG---------------LDVI 344
E T V KP +++ F+T++ L+A G C G + ++
Sbjct: 353 EAT--VYVATSKPGQPPETVDFDTES-LSA--GHAKPCAGGGATSLISYXLPRSPIVRIV 407
Query: 345 DARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
D+ T P DG T+GEI + G V GY + P +E F
Sbjct: 408 DSDTCIECP-DG-TVGEIWVHGDNVANGYWQKPDESERTFG 446
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 109/276 (39%), Gaps = 47/276 (17%)
Query: 149 EDEWQSIA-LGYTSGTTASPKGVVVSHRGA-----YLMSLNGALIWGM--NEGAVFLWTL 200
EDE+ S A L YTSG+T +P GVV+SH+ LMS A G+ A+ W L
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-L 237
Query: 201 PMFHGNGWSYTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIAN 256
P +H G L G L + A + + F AAP +A
Sbjct: 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAA 297
Query: 257 ASPEDTIL---PLTNVVNVNTAGAPPPPSLLFAMSQKGFR-------ITHTYGLTELTGP 306
D + L N++ + + + + + + R I +Y L E T
Sbjct: 298 RRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT-- 355
Query: 307 ASVCAWKPEW--DSLPFETQARLNARQGVRTICLDG---------------LDVIDARTN 349
V KP +++ F+T++ L+A G C G + ++D+ T
Sbjct: 356 VYVATSKPGQPPETVDFDTES-LSA--GHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC 412
Query: 350 QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 385
P DG T+GEI + G V GY + P +E F
Sbjct: 413 IECP-DG-TVGEIWVHGDNVANGYWQKPDESERTFG 446
>pdb|3QLB|A Chain A, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
pdb|3QLB|B Chain B, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
Length = 748
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 141 PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL 186
P F WKP +D ++ YT T +P+ V + +G L + NG +
Sbjct: 268 PSFTWKPNDDTSLTLLADYTQDTFGAPR-VFLPAQGTLLGNPNGKV 312
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 11/49 (22%)
Query: 104 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
KTPH++++GD + LE+AL++G + E L T + E WK EW
Sbjct: 98 KTPHVMLVGDGA-----LEFALSQG-FKKENLL-TAESEKEWK----EW 135
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 11/49 (22%)
Query: 104 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
KTPH++++GD + LE+AL++G + E L T + E WK EW
Sbjct: 98 KTPHVMLVGDGA-----LEFALSQG-FKKENLL-TAESEKEWK----EW 135
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 11/49 (22%)
Query: 104 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
KTPH++++GD + LE+AL++G + E L T + E WK EW
Sbjct: 98 KTPHVMLVGDGA-----LEFALSQG-FKKENLL-TAESEKEWK----EW 135
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 11/49 (22%)
Query: 104 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
KTPH++++GD + LE+AL++G + E L T + E WK EW
Sbjct: 102 KTPHVMLVGDGA-----LEFALSQG-FKKENLL-TAESEKEWK----EW 139
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 11/49 (22%)
Query: 104 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 152
KTPH++++GD + LE+AL++G + E L T + E WK EW
Sbjct: 98 KTPHVMLVGDGA-----LEFALSQG-FKKENLL-TAESEKEWK----EW 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,329,681
Number of Sequences: 62578
Number of extensions: 646500
Number of successful extensions: 1485
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 99
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)