Query 009756
Match_columns 526
No_of_seqs 183 out of 2183
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 12:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 1.4E-76 4.7E-81 604.4 42.0 467 1-516 31-501 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.1E-76 3.8E-81 610.3 40.8 475 1-515 52-535 (536)
3 3r44_A Fatty acyl COA syntheta 100.0 1.1E-76 3.7E-81 607.2 39.6 470 1-518 46-516 (517)
4 3g7s_A Long-chain-fatty-acid-- 100.0 1E-76 3.4E-81 612.4 37.3 476 1-519 55-546 (549)
5 3etc_A AMP-binding protein; ad 100.0 8.9E-76 3.1E-80 607.1 43.3 475 1-515 89-579 (580)
6 2d1s_A Luciferase, luciferin 4 100.0 7.4E-76 2.5E-80 604.9 42.1 477 1-517 55-545 (548)
7 1v25_A Long-chain-fatty-acid-C 100.0 3.2E-77 1.1E-81 614.6 30.3 482 1-516 50-537 (541)
8 3rix_A Luciferase, luciferin 4 100.0 2E-76 6.7E-81 610.3 30.6 479 1-519 53-545 (550)
9 3c5e_A Acyl-coenzyme A synthet 100.0 1.5E-74 5.1E-79 597.2 43.2 476 1-517 76-564 (570)
10 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.7E-75 1.3E-79 599.0 38.2 469 1-516 53-532 (539)
11 1pg4_A Acetyl-COA synthetase; 100.0 9.1E-74 3.1E-78 600.2 43.2 486 1-516 110-622 (652)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 9.4E-74 3.2E-78 584.4 40.2 454 1-514 32-503 (504)
13 1ry2_A Acetyl-coenzyme A synth 100.0 1.3E-73 4.3E-78 599.1 42.0 489 1-516 116-638 (663)
14 3o83_A Peptide arylation enzym 100.0 3.7E-75 1.3E-79 599.7 28.9 473 1-517 58-542 (544)
15 3ivr_A Putative long-chain-fat 100.0 2.4E-75 8.1E-80 597.2 27.1 469 1-521 34-507 (509)
16 2v7b_A Benzoate-coenzyme A lig 100.0 1.2E-72 4.1E-77 580.0 41.7 472 1-511 51-528 (529)
17 3fce_A D-alanine--poly(phospho 100.0 5.6E-73 1.9E-77 580.1 38.3 470 1-521 29-510 (512)
18 3rg2_A Enterobactin synthase c 100.0 2.5E-72 8.5E-77 586.9 43.1 469 1-516 53-535 (617)
19 3e7w_A D-alanine--poly(phospho 100.0 2.2E-72 7.5E-77 575.3 40.7 467 1-518 29-506 (511)
20 1amu_A GRSA, gramicidin synthe 100.0 3.9E-72 1.3E-76 578.2 38.0 451 1-514 67-528 (563)
21 3l8c_A D-alanine--poly(phospho 100.0 1.2E-71 4.2E-76 571.7 37.2 469 1-518 32-515 (521)
22 3ipl_A 2-succinylbenzoate--COA 100.0 1.9E-71 6.5E-76 567.5 35.8 462 1-516 29-498 (501)
23 4gr5_A Non-ribosomal peptide s 100.0 3.4E-72 1.1E-76 580.9 26.6 452 1-512 103-568 (570)
24 3tsy_A Fusion protein 4-coumar 100.0 4.4E-72 1.5E-76 614.7 27.8 483 1-517 91-584 (979)
25 4dg8_A PA1221; ANL superfamily 100.0 2.2E-70 7.5E-75 569.7 35.4 446 1-516 55-514 (620)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 8.3E-71 2.8E-75 561.7 30.9 445 1-511 51-504 (505)
27 3ite_A SIDN siderophore synthe 100.0 1.8E-69 6.3E-74 560.5 23.7 468 1-520 58-548 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 2.1E-68 7.1E-73 556.7 30.0 476 1-519 43-571 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 1E-67 3.4E-72 550.3 34.6 473 1-520 52-568 (576)
30 2vsq_A Surfactin synthetase su 100.0 4.5E-67 1.6E-71 588.7 33.3 455 1-514 492-959 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.3E-54 1.8E-58 436.9 23.9 369 1-408 61-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 4.4E-53 1.5E-57 410.4 21.7 316 151-517 36-356 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 2.9E-48 9.8E-53 389.8 23.1 347 130-508 73-437 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 4.2E-48 1.4E-52 387.8 23.6 328 149-507 82-429 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 4.4E-48 1.5E-52 387.7 22.1 328 149-508 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.1E-30 3.7E-35 255.5 13.5 236 149-418 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.5 1.3E-14 4.4E-19 113.9 7.6 96 407-506 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.5 7.9E-14 2.7E-18 109.1 9.3 96 407-507 1-102 (109)
39 4eql_A 4-substituted benzoates 98.9 3.4E-08 1.2E-12 99.0 16.1 85 358-459 385-481 (581)
40 4b2g_A GH3-1 auxin conjugating 98.9 5.4E-08 1.8E-12 97.7 17.0 90 351-459 392-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.7 3.6E-07 1.2E-11 91.3 17.5 92 351-461 387-490 (581)
42 3qov_A Phenylacetate-coenzyme 85.6 2.5 8.5E-05 41.1 8.7 81 8-93 115-197 (436)
43 2y27_A Phenylacetate-coenzyme 84.7 1.7 5.9E-05 42.2 7.1 72 20-92 127-200 (437)
44 2y4o_A Phenylacetate-coenzyme 83.2 2 6.9E-05 41.8 6.9 71 20-91 129-201 (443)
45 3ivr_A Putative long-chain-fat 74.8 19 0.00065 35.5 11.1 94 150-253 19-116 (509)
46 3rix_A Luciferase, luciferin 4 73.0 12 0.0004 37.6 9.1 85 170-255 49-137 (550)
47 3g7s_A Long-chain-fatty-acid-- 71.4 30 0.001 34.5 11.7 103 150-255 32-139 (549)
48 3ni2_A 4-coumarate:COA ligase; 71.0 20 0.0007 35.6 10.3 97 150-254 35-135 (536)
49 3hgu_A EHPF; phenazine, antibi 70.1 11 0.00038 35.3 7.7 67 20-88 128-219 (369)
50 3ezx_A MMCP 1, monomethylamine 67.5 39 0.0013 28.9 9.8 91 194-287 93-195 (215)
51 3etc_A AMP-binding protein; ad 63.1 40 0.0014 33.9 10.6 94 150-248 69-166 (580)
52 2v7b_A Benzoate-coenzyme A lig 63.0 36 0.0012 33.7 10.2 82 170-252 47-132 (529)
53 1t5h_X 4-chlorobenzoyl COA lig 62.9 50 0.0017 32.4 11.2 97 150-254 15-117 (504)
54 2d1s_A Luciferase, luciferin 4 61.6 24 0.00084 35.2 8.7 66 22-89 231-298 (548)
55 3r44_A Fatty acyl COA syntheta 61.5 48 0.0016 32.7 10.8 94 150-251 29-126 (517)
56 1v25_A Long-chain-fatty-acid-C 59.6 29 0.00099 34.6 8.8 71 21-91 213-284 (541)
57 3c5e_A Acyl-coenzyme A synthet 59.6 61 0.0021 32.4 11.3 100 150-254 56-160 (570)
58 1amu_A GRSA, gramicidin synthe 58.8 55 0.0019 32.7 10.7 95 150-254 52-150 (563)
59 3t5a_A Long-chain-fatty-acid-- 58.7 48 0.0016 32.2 10.1 106 150-257 37-149 (480)
60 1pg4_A Acetyl-COA synthetase; 58.0 60 0.0021 33.2 11.0 94 151-248 90-187 (652)
61 1ry2_A Acetyl-coenzyme A synth 54.1 68 0.0023 32.9 10.6 96 150-249 95-195 (663)
62 4fuq_A Malonyl COA synthetase; 53.1 65 0.0022 31.6 10.0 80 170-250 27-110 (503)
63 3ipl_A 2-succinylbenzoate--COA 51.2 44 0.0015 32.7 8.4 68 21-89 198-266 (501)
64 3kxw_A Saframycin MX1 syntheta 50.7 1.1E+02 0.0037 30.6 11.5 101 150-256 24-131 (590)
65 3o83_A Peptide arylation enzym 48.4 93 0.0032 30.8 10.4 70 21-91 226-298 (544)
66 3tsy_A Fusion protein 4-coumar 48.2 79 0.0027 34.2 10.5 94 150-251 74-171 (979)
67 4dg8_A PA1221; ANL superfamily 48.1 55 0.0019 33.2 8.7 71 20-90 197-269 (620)
68 4gr5_A Non-ribosomal peptide s 48.0 57 0.0019 32.7 8.8 71 20-90 247-319 (570)
69 1mdb_A 2,3-dihydroxybenzoate-A 46.5 54 0.0018 32.5 8.3 69 22-91 218-289 (539)
70 3fce_A D-alanine--poly(phospho 46.2 1E+02 0.0035 30.2 10.2 88 150-247 14-105 (512)
71 3l8c_A D-alanine--poly(phospho 44.9 1.1E+02 0.0036 30.1 10.1 78 170-248 28-109 (521)
72 3nra_A Aspartate aminotransfer 44.8 1.7E+02 0.0059 27.1 11.4 53 24-80 123-185 (407)
73 3dzz_A Putative pyridoxal 5'-p 43.5 2E+02 0.0068 26.5 12.0 55 24-81 106-167 (391)
74 2cvi_A 75AA long hypothetical 43.0 59 0.002 22.5 5.8 47 422-483 15-61 (83)
75 3tbh_A O-acetyl serine sulfhyd 38.5 92 0.0031 28.6 7.9 63 21-83 64-127 (334)
76 2vsq_A Surfactin synthetase su 38.0 1.3E+02 0.0044 33.8 10.4 88 20-114 640-731 (1304)
77 3e7w_A D-alanine--poly(phospho 37.9 48 0.0016 32.6 6.3 68 21-88 178-248 (511)
78 2zzt_A Putative uncharacterize 36.2 1.3E+02 0.0043 22.1 8.0 62 422-483 12-73 (107)
79 3rg2_A Enterobactin synthase c 35.5 1.8E+02 0.006 29.3 10.2 70 22-92 220-292 (617)
80 3ite_A SIDN siderophore synthe 33.2 2.3E+02 0.0079 27.9 10.6 96 150-248 33-134 (562)
81 3gqw_A Fatty acid AMP ligase; 32.6 1.5E+02 0.005 29.5 9.0 84 170-254 48-142 (576)
82 2zbc_A 83AA long hypothetical 31.2 87 0.003 21.3 5.1 47 422-483 15-61 (83)
83 3vc3_A Beta-cyanoalnine syntha 30.5 88 0.003 28.9 6.3 60 24-83 83-142 (344)
84 4h1h_A LMO1638 protein; MCCF-l 30.1 1.6E+02 0.0054 27.0 7.9 18 21-38 6-23 (327)
85 3ej9_B Beta-subunit of trans-3 28.6 1.1E+02 0.0037 20.5 4.5 53 453-505 2-57 (70)
86 3zzp_A TS9, ribosomal protein 27.6 1.5E+02 0.0051 20.3 8.3 62 416-480 13-74 (77)
87 3sr3_A Microcin immunity prote 26.5 1.9E+02 0.0065 26.5 7.8 17 22-38 8-24 (336)
88 4e5s_A MCCFLIKE protein (BA_56 25.9 1.6E+02 0.0053 27.1 7.0 16 23-38 8-23 (331)
89 3hvy_A Cystathionine beta-lyas 25.8 3.8E+02 0.013 25.5 10.1 59 24-82 113-184 (427)
90 3tla_A MCCF; serine protease, 24.9 2E+02 0.007 26.8 7.7 17 22-38 38-54 (371)
91 3byp_A CZRB protein; membrane 24.5 1.6E+02 0.0055 20.7 5.6 63 421-483 11-75 (94)
92 1zsy_A Mitochondrial 2-enoyl t 24.1 1.5E+02 0.005 27.4 6.7 60 22-82 163-224 (357)
93 1eg5_A Aminotransferase; PLP-d 23.3 1.3E+02 0.0044 27.7 6.3 56 25-81 87-146 (384)
94 4eez_A Alcohol dehydrogenase 1 23.1 1.5E+02 0.0051 27.1 6.5 60 20-82 157-216 (348)
95 3nyq_A Malonyl-COA ligase; A/B 22.8 3.8E+02 0.013 26.0 9.8 77 170-249 47-124 (505)
96 2djw_A Probable transcriptiona 22.7 97 0.0033 21.8 4.1 47 422-483 15-61 (92)
97 3ffh_A Histidinol-phosphate am 22.0 4.4E+02 0.015 23.8 10.9 53 24-80 105-161 (363)
98 3i16_A Aluminum resistance pro 21.7 1.9E+02 0.0066 27.5 7.1 59 24-82 112-184 (427)
99 3ss7_X D-serine dehydratase; t 21.1 3.3E+02 0.011 26.0 8.7 62 30-91 162-223 (442)
100 4aec_A Cysteine synthase, mito 21.1 2.5E+02 0.0086 26.8 7.6 62 21-82 167-229 (430)
101 3ri6_A O-acetylhomoserine sulf 20.0 1.8E+02 0.0062 27.7 6.5 53 31-83 100-155 (430)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.4e-76 Score=604.36 Aligned_cols=467 Identities=22% Similarity=0.301 Sum_probs=403.9
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 31 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 31 YAELVARAGRVANV-L---VARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+++....+........ ..++.++.... ..+.+........ .......++++++|+||
T Consensus 107 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~T 163 (503)
T 4fuq_A 107 DPSKRDGIAAIAAKVG---------ATVETLGPDGR-------------GSLTDAAAGASEA-FATIDRGADDLAAILYT 163 (503)
T ss_dssp CGGGTTTTHHHHHHHT---------CEEEECCTTSC-------------SHHHHHHHTSCSC-CCCCCCCTTSEEEEEEC
T ss_pred CchhhHHHHHHHhhcC---------ceEEEecCCcc-------------cccchhhhcCCCC-cCcCCCCCCCeEEEEEC
Confidence 9887666555544433 23444433211 1222222222211 12223578899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATH 239 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 239 (526)
|||||.||+|+++|+++.+........+++++++++++.+|++|.+++.. .+..++.|+++++.+.+++..+++.++
T Consensus 164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~-- 241 (503)
T 4fuq_A 164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA-- 241 (503)
T ss_dssp C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--
T ss_pred CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--
Confidence 99999999999999999999999888999999999999999999998654 556777888888888899999999998
Q ss_pred CceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCCCCC
Q 009756 240 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDS 318 (526)
Q Consensus 240 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~ 318 (526)
++|+++++|+++..|++........ ++++|.+++||+++++++.+.+. .+++++++.||+||++..++...
T Consensus 242 ~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~------- 313 (503)
T 4fuq_A 242 RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY------- 313 (503)
T ss_dssp TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-------
T ss_pred hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-------
Confidence 8999999999999999987666555 88999999999999999999998 45999999999999986543211
Q ss_pred CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeEE
Q 009756 319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVK 397 (526)
Q Consensus 319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~ 397 (526)
......+++|.|++++ +++|+|+++|++++.| +.|||+++|++++.||+++++.+...|. +|||+|||+|++
T Consensus 314 ----~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~ 386 (503)
T 4fuq_A 314 ----DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKI 386 (503)
T ss_dssp ----SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEE
T ss_pred ----CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEE
Confidence 0112236899999999 6999998889999998 8999999999999999999999999996 899999999999
Q ss_pred cCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHH
Q 009756 398 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF 477 (526)
Q Consensus 398 ~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 477 (526)
++||.+++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++... ..++++++
T Consensus 387 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~-----~~~~l~~~ 461 (503)
T 4fuq_A 387 DERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATI-----DEAQVLHG 461 (503)
T ss_dssp CTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-----CHHHHHHH
T ss_pred cCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCC-----CHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999889999999999877655 56889999
Q ss_pred HHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 478 CRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 478 l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
++++|+.|++|+.+.+++ ||+|++||++|++|++++.+.
T Consensus 462 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 462 LDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp HBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred HHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999999999999999988 999999999999999998653
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.1e-76 Score=610.26 Aligned_cols=475 Identities=23% Similarity=0.353 Sum_probs=409.7
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 52 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~ 127 (536)
T 3ni2_A 52 YADVELTARRVASG-L---NKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT 127 (536)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+.+....+.+...... ..++.++... .+...++++........ ......++++++|+||
T Consensus 128 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~T 186 (536)
T 3ni2_A 128 QACYYEKVKDFARESD---------VKVMCVDSAP-----------DGCLHFSELTQADENEA-PQVDISPDDVVALPYS 186 (536)
T ss_dssp CGGGTHHHHHHHHHHT---------CEEEESSCCC-----------TTCEETHHHHTSCGGGC-CCCCCCTTSEEECCEE
T ss_pred ChHHHHHHHHHHhhcC---------ceEEEecCCC-----------CCccCHHHHhhcccccc-ccCCCCccCEEEEEcC
Confidence 9988777776655432 3455554321 23455666655433222 2233578899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHh----HhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHHHH
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTA 235 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 235 (526)
|||||.||+|+++|+++.+.+..... .+.+.+++++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.
T Consensus 187 SGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 266 (536)
T 3ni2_A 187 SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL 266 (536)
T ss_dssp CTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH
T ss_pred CCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH
Confidence 99999999999999999887766543 346789999999999999999854 5566777888888888999999999
Q ss_pred HHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccC
Q 009756 236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWK 313 (526)
Q Consensus 236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~ 313 (526)
++++++|++.++|+++..|.+........ ++++|.+++|||++++++.++++ .+ ++++++.||+||++++++.+...
T Consensus 267 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~ 345 (536)
T 3ni2_A 267 IEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAF 345 (536)
T ss_dssp HHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGG
T ss_pred HHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhccccc
Confidence 99999999999999999999887655555 89999999999999999999998 45 89999999999998776654321
Q ss_pred CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeeecC
Q 009756 314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSG 392 (526)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tG 392 (526)
.. .......+++|.|++++ +++|+|+++|++++.| +.|||+++|++++.||+++++.+...| .+|||+||
T Consensus 346 ~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TG 416 (536)
T 3ni2_A 346 AK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG 416 (536)
T ss_dssp SS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE
T ss_pred CC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhccCCCceEcc
Confidence 11 01112347899999999 6999998889999988 899999999999999999999999999 58999999
Q ss_pred ceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHH
Q 009756 393 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE 472 (526)
Q Consensus 393 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 472 (526)
|+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++... ..+
T Consensus 417 Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----~~~ 491 (536)
T 3ni2_A 417 DIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA-----TED 491 (536)
T ss_dssp EEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-----CHH
T ss_pred cEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCC-----CHH
Confidence 999999999999999999999999999999999999999999999999999999889999999998876554 568
Q ss_pred HHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756 473 DVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 515 (526)
Q Consensus 473 ~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~ 515 (526)
+++++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+
T Consensus 492 ~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 492 EIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp HHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred HHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999999999999999988 99999999999999988754
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-76 Score=607.20 Aligned_cols=470 Identities=29% Similarity=0.402 Sum_probs=405.4
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 46 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 121 (517)
T 3r44_A 46 YAQMNALANRCADV-L---TALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIY 121 (517)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+.+....+........ ....++.+... .++.+.+........ .....++++++|+||
T Consensus 122 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~T 178 (517)
T 3r44_A 122 GAPSAPVIDAIRAQAD-------PPGTVTDWIGA---------------DSLAERLRSAAADEP-AVECGGDDNLFIMYT 178 (517)
T ss_dssp CGGGHHHHHHHHHSSS-------CCTTCCEEEEH---------------HHHHHHHHHCCCCCC-CCCCCTTSEEEEEEE
T ss_pred CCchHHHHHHHHhccC-------CccEEEEccCc---------------ccHHHHhhccCcCCC-CCCCCCCCeEEEEEC
Confidence 9988777766654433 12222222111 234444544333222 233578999999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG 240 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 240 (526)
|||||.||+|+++|+++.+.+......+++.+++++++.+|++|..++...+..++.|+++++.+.+++..+++.+++++
T Consensus 179 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~ 258 (517)
T 3r44_A 179 SGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER 258 (517)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTT
T ss_pred CcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhC
Confidence 99999999999999999999998888899999999999999999999987777777888888888899999999999999
Q ss_pred ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCCCCC
Q 009756 241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 320 (526)
Q Consensus 241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 320 (526)
+|++.++|+++..|.+........ ++++|.+++|||++++++.+.+.+.++++++.||+||+++.++......
T Consensus 259 ~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~------ 331 (517)
T 3r44_A 259 VCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED------ 331 (517)
T ss_dssp CCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGG------
T ss_pred CeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCcc------
Confidence 999999999999998875444444 7899999999999999999999977999999999999987766543211
Q ss_pred cccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC
Q 009756 321 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD 400 (526)
Q Consensus 321 ~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~ 400 (526)
.....+++|.|.+++ +++|+|++ |.+++.+ .|||+++|++++.||+++++.+...|.+|||+|||+|++++|
T Consensus 332 ---~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~d 403 (517)
T 3r44_A 332 ---ALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDE 403 (517)
T ss_dssp ---TTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTT
T ss_pred ---ccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCC
Confidence 122347899999999 69999986 8888775 699999999999999999999999999999999999999999
Q ss_pred ceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756 401 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA 480 (526)
Q Consensus 401 g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~ 480 (526)
|++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.+++++ ..++... ..+++++++++
T Consensus 404 G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~-----~~~~l~~~l~~ 477 (517)
T 3r44_A 404 GYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEV-----SEQQIVEYCGT 477 (517)
T ss_dssp SCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTC-----CHHHHHHHHHH
T ss_pred eeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCC-----CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888 4444333 45889999999
Q ss_pred cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756 481 KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 518 (526)
Q Consensus 481 ~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~ 518 (526)
+|+.|++|+.+.+++ ||+|++||++|++|++++.+..+
T Consensus 478 ~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 478 RLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp HSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred hCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 999999999999998 99999999999999999987643
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1e-76 Score=612.38 Aligned_cols=476 Identities=24% Similarity=0.352 Sum_probs=373.7
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 55 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~ 130 (549)
T 3g7s_A 55 FLEICEVTKKLASG-I---SRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVV 130 (549)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+++....+........ ...++.++. ...++++++..............++++++|+||
T Consensus 131 ~~~~~~~~~~~~~~~~--------~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T 188 (549)
T 3g7s_A 131 HSMLYENFKPVLEKTG--------VERVFVVGG--------------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYT 188 (549)
T ss_dssp EGGGHHHHHHHHTTSC--------CCEEEEETC--------------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEE
T ss_pred ChHHHHHHHHHHhhCC--------CcEEEEeCC--------------CCcCHHHHHhcCccccccccCCCCCCEEEEEEC
Confidence 9988777766544332 455555543 224677777665443332222334899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG 240 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 240 (526)
|||||.||+|+++|.++.+.+......+++.+++++++.+|++|..++...+.++..|+++++.+.+++..+++.+++++
T Consensus 189 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~ 268 (549)
T 3g7s_A 189 GGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYK 268 (549)
T ss_dssp CCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTT
T ss_pred CCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999999999998888899999999999999999999888777888899888888899999999999999
Q ss_pred ceeeeccHHHHHHHHccCCCCC--CCCCCceeeEeccCCCCCHHHHHHHhh-----cC---CeeecccccccCCCCcccc
Q 009756 241 VTHFCAAPVVLNAIANASPEDT--ILPLTNVVNVNTAGAPPPPSLLFAMSQ-----KG---FRITHTYGLTELTGPASVC 310 (526)
Q Consensus 241 ~t~l~~~P~~~~~l~~~~~~~~--~~~l~~lr~~~~~Ge~l~~~~~~~~~~-----~~---~~i~~~YG~tE~~~~~~~~ 310 (526)
+|+++++|+++..|.+...... .. ++++|.+++||+++++++.+++.+ ++ +++++.||+||++++++..
T Consensus 269 ~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 347 (549)
T 3g7s_A 269 GTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTN 347 (549)
T ss_dssp CCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEEC
T ss_pred CeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcC
Confidence 9999999999999987643332 34 789999999999999999999874 45 8999999999998776654
Q ss_pred ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh---cCC
Q 009756 311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---ANG 387 (526)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g 387 (526)
... ......++|.|++++ +++|+|+++|++++.| +.|||+|+|++++.||+++++.+...| .+|
T Consensus 348 ~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g 414 (549)
T 3g7s_A 348 PPL----------RLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414 (549)
T ss_dssp CGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTC
T ss_pred Ccc----------ccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCC
Confidence 211 113347899999999 6999997779999998 899999999999999999999999998 677
Q ss_pred --eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchh
Q 009756 388 --WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL 465 (526)
Q Consensus 388 --~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 465 (526)
||+|||+|++++||.+++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|++.++....
T Consensus 415 ~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 494 (549)
T 3g7s_A 415 RKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGK 494 (549)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTS
T ss_pred CceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCc
Confidence 999999999999999999999999999999999999999999999999999999999998899999999998763211
Q ss_pred hhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCc
Q 009756 466 DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 519 (526)
Q Consensus 466 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~ 519 (526)
...++|+++++++|+.|++|+.+.+++ ||+|++||++|++|+++..+....
T Consensus 495 ---~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 495 ---VDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546 (549)
T ss_dssp ---CCHHHHHHHHHTTCC-----CCCCEEEECC----------------------
T ss_pred ---CCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence 156899999999999999999999888 999999999999999998876544
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8.9e-76 Score=607.05 Aligned_cols=475 Identities=20% Similarity=0.277 Sum_probs=389.8
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 89 y~eL~~~~~~~A~~-L---~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~ 164 (580)
T 3etc_A 89 FKDLKYYSDKAANF-F---VKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVC 164 (580)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchH--HHHHHHHHHhhhccCCCCCC-CeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCC---CCCCCCCe
Q 009756 81 DQEFF--SLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWK---PPEDEWQS 154 (526)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~ 154 (526)
+.+.. ..+.+.....+ .. ..++.++... ..+..++.+.+.......... ....++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 227 (580)
T 3etc_A 165 IAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDI 227 (580)
T ss_dssp ESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSE
T ss_pred ecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------ccccccHHHHHhhCCcccccCccccCCCCCCc
Confidence 88754 56666655554 23 4556665431 235577888777655433222 23578899
Q ss_pred EEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeee--cccCHHH
Q 009756 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICL--RQVTAKA 231 (526)
Q Consensus 155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~--~~~~~~~ 231 (526)
++|+|||||||.||+|.++|.+++.........+++.+++++++..|++|..+.+. .+..+..|+++++. ..+++..
T Consensus 228 a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~ 307 (580)
T 3etc_A 228 CLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKN 307 (580)
T ss_dssp EEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHH
T ss_pred EEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHH
Confidence 99999999999999999999998887776666678899999999999999887765 44455566666665 4689999
Q ss_pred HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccc
Q 009756 232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVC 310 (526)
Q Consensus 232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~ 310 (526)
+++.++++++|+++++|++++.|.+.. ..... ++++|.+++|||++++++.+++. .+|+++++.||+||++..++..
T Consensus 308 ~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~-l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 308 MLEKASKYGVTTFCAPPTIYRFLIKED-LSHYN-FSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp HHHHHHHHTCCEEEECHHHHHHHHTSC-C---C-CTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred HHHHHHHHCCeEEEccHHHHHHHHhcc-cccCC-CccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence 999999999999999999999999863 33334 78999999999999999999998 4599999999999998665543
Q ss_pred ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC-----ccccccccCChhhhhhhhc
Q 009756 311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG-----SCVMKGYLKNPKANEEAFA 385 (526)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~ 385 (526)
... ....+++|.|++++ +++|+|++ |++++.| +.|||+++| +.++.||+++++.+...|.
T Consensus 386 ~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~ 450 (580)
T 3etc_A 386 PWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWH 450 (580)
T ss_dssp TTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE
T ss_pred CCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcC
Confidence 211 12337899999999 69999987 9999998 899999997 7899999999999999999
Q ss_pred CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchh
Q 009756 386 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL 465 (526)
Q Consensus 386 ~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 465 (526)
+|||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+|+|++.+++..++.+.++|++.++....
T Consensus 451 ~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~ 530 (580)
T 3etc_A 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPS 530 (580)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999998775432
Q ss_pred hhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHh
Q 009756 466 DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 515 (526)
Q Consensus 466 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~ 515 (526)
....++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+
T Consensus 531 --~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 531 --DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp --HHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred --HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 2257899999999999999999999988 99999999999999998764
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7.4e-76 Score=604.95 Aligned_cols=477 Identities=21% Similarity=0.293 Sum_probs=408.4
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 55 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 55 YAEYLEKSCCLGKA-L---QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC-cCCCCCC-----CCCCe
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE-FAWKPPE-----DEWQS 154 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-----~~~~~ 154 (526)
+++....+.......+ ....++.++.... ..+..++++++...... ....... .++++
T Consensus 131 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 194 (548)
T 2d1s_A 131 SKKGLDKVITVQKTVT-------TIKTIVILDSKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQV 194 (548)
T ss_dssp CTTTHHHHHHHHHHST-------TCCEEEETTCSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCE
T ss_pred cHHHHHHHHHHhcCCC-------CCCEEEEeCCccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCE
Confidence 9988776666554433 2455665544211 01234577776654221 1110001 23899
Q ss_pred EEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHH
Q 009756 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA 231 (526)
Q Consensus 155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 231 (526)
++++|||||||.||+|+++|+++.+.+...... +++++++++++.+|++|.+++...+...+.|+++++.+.+++..
T Consensus 195 a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~G~~~v~~~~~~~~~ 274 (548)
T 2d1s_A 195 ALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET 274 (548)
T ss_dssp EEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHTTCEEEECCCCCHHH
T ss_pred EEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHhcCcEEEEcCCCCHHH
Confidence 999999999999999999999998888776665 67889999999999999999876555545888888888889999
Q ss_pred HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccc
Q 009756 232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASV 309 (526)
Q Consensus 232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~ 309 (526)
+++.++++++|+++++|+++..|.+........ ++++|.+++||+++++++.+++. .+ ++++++.||+||++++++.
T Consensus 275 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 353 (548)
T 2d1s_A 275 FLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII 353 (548)
T ss_dssp HHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred HHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee
Confidence 999999999999999999999999876544445 88999999999999999999998 45 7889999999999876654
Q ss_pred cccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCe
Q 009756 310 CAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGW 388 (526)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~ 388 (526)
.... ....+++|.|++++ +++|+|+++|++++.| +.|||+++|++++.||+++++.+...| .+||
T Consensus 354 ~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 419 (548)
T 2d1s_A 354 TPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGW 419 (548)
T ss_dssp CCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSC
T ss_pred cCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCChHHhhhcccCCcE
Confidence 2111 12337899999999 6999997779999988 799999999999999999999999999 5899
Q ss_pred eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG 468 (526)
Q Consensus 389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 468 (526)
|+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++|++.++...
T Consensus 420 ~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~---- 495 (548)
T 2d1s_A 420 LHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM---- 495 (548)
T ss_dssp EEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC----
T ss_pred EEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCC----
Confidence 9999999999999999999999999999999999999999999999999999999998888999999998876543
Q ss_pred hhHHHHHHHHHhcCCCccCCc-EEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756 469 KLAEDVSKFCRAKMPSYWVPK-SVVFAA-LPKSATGKIQKHLLRAKAKEMG 517 (526)
Q Consensus 469 ~~~~~l~~~l~~~l~~~~~p~-~~~~~~-lP~t~~GKv~r~~l~~~~~~~~ 517 (526)
..++++++++++|+.|++|+ .+.+++ ||+|++||++|++|++++.+..
T Consensus 496 -~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 496 -TEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp -CHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred -CHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 46889999999999999999 888888 9999999999999999987543
No 7
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.2e-77 Score=614.62 Aligned_cols=482 Identities=32% Similarity=0.490 Sum_probs=372.7
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 50 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 125 (541)
T 1v25_A 50 YAEVYQRARRLMGG-L---RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLF 125 (541)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+++....+.......+ ....++.++.... .+..++++++...... ....++++++|+||
T Consensus 126 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~----~~~~~~~~a~i~~T 184 (541)
T 1v25_A 126 DPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGYLAYEEALGEEADP----VRVPERAACGMAYT 184 (541)
T ss_dssp CGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTCEEHHHHCCSCCCC----CCCCTTSEEEEEEE
T ss_pred ChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------cccccHHHHhhccCCc----ccCCCCCcEEEEEC
Confidence 9987766655543333 3455666554321 1334566665443322 23467899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhh--HhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc-cCHHHHHHHHH
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNG--ALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ-VTAKAVYTAIA 237 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~ 237 (526)
|||||.||+|+++|+++.+..... ...+++++++++++.+|++|..++...+.+++.|+++++.+. +++..+++.++
T Consensus 185 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~ 264 (541)
T 1v25_A 185 TGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD 264 (541)
T ss_dssp CSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHH
T ss_pred CCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHH
Confidence 999999999999999988776653 345678899999999999999998777788888888887753 69999999999
Q ss_pred hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCC
Q 009756 238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 317 (526)
Q Consensus 238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 317 (526)
++++|+++++|+++..|.+........ ++++|.+++||+++++++.+++..+++++++.||+||++++++.+.....+.
T Consensus 265 ~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~ 343 (541)
T 1v25_A 265 GEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLE 343 (541)
T ss_dssp HTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGT
T ss_pred hcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceeccccccccc
Confidence 999999999999999998765433334 7899999999999999999999777999999999999987766543322211
Q ss_pred CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCceeE
Q 009756 318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAV 396 (526)
Q Consensus 318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~ 396 (526)
..+.........++|.|++++ +++|+|++ |++++.++++.|||+++|++++.||+++++.+...|. +|||+|||+|+
T Consensus 344 ~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~ 421 (541)
T 1v25_A 344 SLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV 421 (541)
T ss_dssp TSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEE
T ss_pred ccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEE
Confidence 111111112347899999999 69999987 8898865446899999999999999999999999997 99999999999
Q ss_pred EcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756 397 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476 (526)
Q Consensus 397 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 476 (526)
+++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+.. +... ..+++++
T Consensus 422 ~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~-----~~~~l~~ 495 (541)
T 1v25_A 422 WDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKP-----TPEELNE 495 (541)
T ss_dssp ECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------
T ss_pred EcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCC-----CHHHHHH
Confidence 999999999999999999999999999999999999999999999999998899999999876 2222 4577889
Q ss_pred HHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 477 FCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 477 ~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
++++ +|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus 496 ~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 496 HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp -----CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred HHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 9988 899999999999988 999999999999999987643
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2e-76 Score=610.33 Aligned_cols=479 Identities=22% Similarity=0.302 Sum_probs=315.0
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 53 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 128 (550)
T 3rix_A 53 YAEYFEMSVRLAEA-M---KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 128 (550)
T ss_dssp HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC------cCCCCCCCCCCe
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE------FAWKPPEDEWQS 154 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~ 154 (526)
+++....+.......+ ....++.++.... ..+..++.+++...... ..+.....++++
T Consensus 129 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 192 (550)
T 3rix_A 129 SKKGLQKILNVQKKLP-------IIQKIIIMDSKTD---------YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192 (550)
T ss_dssp CGGGHHHHHHHHHHCT-------TCCEEEETTCSSC---------BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSE
T ss_pred cHHHHHHHHHHHhhCC-------CcceEEEEcCCcc---------ccCcccHHHHhhccccccccccccCCCCCCCCCCE
Confidence 9998888877776665 4566776655421 12445666666543321 111122345789
Q ss_pred EEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHH
Q 009756 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA 231 (526)
Q Consensus 155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 231 (526)
++|+|||||||.||+|+++|+++...+...... +++.+++++++.+|++|.+++...+.++..|+++++...+++..
T Consensus 193 a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~ 272 (550)
T 3rix_A 193 ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL 272 (550)
T ss_dssp EEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred EEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence 999999999999999999999998887766554 46788999999999999999988888889999999988899999
Q ss_pred HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCe-eecccccccCCCCccc
Q 009756 232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFR-ITHTYGLTELTGPASV 309 (526)
Q Consensus 232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~-i~~~YG~tE~~~~~~~ 309 (526)
+++.++++++|+++++|+++..|++........ ++++|.+++||+++++++.+++. .++.. +++.||+||+++.++.
T Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 273 FLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSC-CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHhCccccccC-cccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 999999999999999999999999887665555 89999999999999999999998 55764 9999999999876665
Q ss_pred cccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCe
Q 009756 310 CAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGW 388 (526)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~ 388 (526)
+... ....+++|.|++++ +++|+|+++|++++.| +.|||+++|++++.||+++++.+...| .+||
T Consensus 352 ~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~ 417 (550)
T 3rix_A 352 TPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGW 417 (550)
T ss_dssp CCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSC
T ss_pred CCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCC
Confidence 4321 12237899999999 6999998889999988 899999999999999999999999999 5899
Q ss_pred eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG 468 (526)
Q Consensus 389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 468 (526)
|+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++...
T Consensus 418 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~---- 493 (550)
T 3rix_A 418 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM---- 493 (550)
T ss_dssp EEEEEEEEECTTCCEEEC--------------------------------------------------------------
T ss_pred eecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999989999999998876544
Q ss_pred hhHHHHHHHHHhcCCCccCC-cEEEecc-ccCCCCccccHHHHHHHHHhcCCc
Q 009756 469 KLAEDVSKFCRAKMPSYWVP-KSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 519 (526)
Q Consensus 469 ~~~~~l~~~l~~~l~~~~~p-~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~ 519 (526)
..++++++++++++.++.| ..+.+++ ||+|++||++|++|++++.+....
T Consensus 494 -~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 494 -TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp -----------------------------------------------------
T ss_pred -CHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence 5688999999999988655 4677888 999999999999999999875543
No 9
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.5e-74 Score=597.16 Aligned_cols=476 Identities=22% Similarity=0.319 Sum_probs=403.4
Q ss_pred CccchhhhhhcccccccCccCC-CCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLF-PSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 79 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 79 (526)
|+||.++++++|++ | ++. |+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus 76 y~el~~~~~~lA~~-L---~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 151 (570)
T 3c5e_A 76 FRELSENSQQAANV-L---SGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIV 151 (570)
T ss_dssp HHHHHHHHHHHHHH-H---HTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHH-H---HHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEE
Confidence 78999999999999 9 888 999999999999999999999999999999999999999999999999999999999
Q ss_pred EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756 80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 159 (526)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~ 159 (526)
++++....+.+.....+ ..+.++.++.... .+..++++++........ .....++++++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~ 213 (570)
T 3c5e_A 152 AGDEVIQEVDTVASECP-------SLRIKLLVSEKSC----------DGWLNFKKLLNEASTTHH-CVETGSQEASAIYF 213 (570)
T ss_dssp EETTTHHHHHHHGGGCT-------TCCEEEEESSSCC----------TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEE
T ss_pred echHHHHHHHHHhhcCC-------ceeEEEEecccCc----------cccccHHHHhhccccccc-ccCCCCCCcEEEEE
Confidence 99887766655444333 3455666654211 234567777665443222 12356789999999
Q ss_pred cCCCCCCccceeecchhHHH--HHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeec--ccCHHHHHH
Q 009756 160 TSGTTASPKGVVVSHRGAYL--MSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLR--QVTAKAVYT 234 (526)
Q Consensus 160 TSGsTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~~~ 234 (526)
||||||.||+|+++|+ ++. ..... ..+++++++++++..|++|..++. ..+.++..|+++++.. .+++..+++
T Consensus 214 TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 291 (570)
T 3c5e_A 214 TSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILK 291 (570)
T ss_dssp CCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHH
T ss_pred CCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHH
Confidence 9999999999999999 544 33333 567889999999999999999886 4566677788777775 689999999
Q ss_pred HHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccccC
Q 009756 235 AIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWK 313 (526)
Q Consensus 235 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~ 313 (526)
.++++++|+++++|+++..|.+.. ..... ++++|.+++||+++++++.+++.+ +++++++.||+||++.+++.....
T Consensus 292 ~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~-~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~ 369 (570)
T 3c5e_A 292 TLSSYPIKSMMGAPIVYRMLLQQD-LSSYK-FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM 369 (570)
T ss_dssp HHHHSCCCEEEECHHHHHHHHTSC-TTTCC-CTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS
T ss_pred HHHHhCCeEEeccHHHHHHHHhcc-ccccc-cccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCccc
Confidence 999999999999999999999873 22233 789999999999999999999984 699999999999998554432110
Q ss_pred CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEc-----CccccccccCChhhhhhhhcCCe
Q 009756 314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR-----GSCVMKGYLKNPKANEEAFANGW 388 (526)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~g~ 388 (526)
....+++|.|++++ +++|+|++ |++++.| +.|||+++ |++++.||+++++.+...|.+||
T Consensus 370 -----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~ 434 (570)
T 3c5e_A 370 -----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDF 434 (570)
T ss_dssp -----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTE
T ss_pred -----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhcCCc
Confidence 12237899999999 69999987 9999988 89999999 99999999999999999999999
Q ss_pred eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG 468 (526)
Q Consensus 389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 468 (526)
|+|||+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|++.++....+..
T Consensus 435 ~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~ 514 (570)
T 3c5e_A 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPE 514 (570)
T ss_dssp EEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHH
T ss_pred cccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999987654222223
Q ss_pred hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756 469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 517 (526)
Q Consensus 469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~ 517 (526)
...++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+.+
T Consensus 515 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 515 QLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhh
Confidence 367899999999999999999999988 9999999999999999886543
No 10
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.7e-75 Score=598.96 Aligned_cols=469 Identities=23% Similarity=0.329 Sum_probs=397.3
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 53 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 128 (539)
T 1mdb_A 53 YRELDTRADRLAAG-F---QKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII 128 (539)
T ss_dssp HHHHHHHHHHHHHH-H---HHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756 81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI 155 (526)
Q Consensus 81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a 155 (526)
+++.. ..+.......+ ..+.++..++.. .+.++....... .......+++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~d~a 185 (539)
T 1mdb_A 129 PDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE---------------EFLPLEDLHTEP-VKLPEVKSSDVA 185 (539)
T ss_dssp ESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT---------------TSEEGGGCCCCC-CCCCCCCTTSEE
T ss_pred ccccccccHHHHHHHHHhcCC-------CccEEEEcCCcc---------------chhhhhhccccc-cccCCCCcCceE
Confidence 87532 23333333333 344555444321 111122111111 111235678999
Q ss_pred EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH--HHHHHHhhcceeeeecccCHHHHH
Q 009756 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS--YTWSLAALCGTSICLRQVTAKAVY 233 (526)
Q Consensus 156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 233 (526)
+++|||||||.||+|+++|+++.+.+......+++++++++++.+|++|.+++. ..+.++..|+++++.+.+++..++
T Consensus 186 ~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 265 (539)
T 1mdb_A 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265 (539)
T ss_dssp EEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHH
T ss_pred EEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHH
Confidence 999999999999999999999999988888888999999999999999999886 467778889988888888999999
Q ss_pred HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756 234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW 312 (526)
Q Consensus 234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~ 312 (526)
+.++++++|+++++|+++..|++........ ++++|.+++||+++++++.+++. .+++++++.||+||++..++..
T Consensus 266 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~-- 342 (539)
T 1mdb_A 266 PLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRL-- 342 (539)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCT--
T ss_pred HHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCC--
Confidence 9999999999999999999998765433444 89999999999999999999998 5699999999999964322211
Q ss_pred CCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-CCeeec
Q 009756 313 KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHS 391 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~t 391 (526)
. ........++|.|+++..+++|+|++ +++++.| +.|||+++|++++.||+++++.+...|. +|||+|
T Consensus 343 ~--------~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 343 D--------DPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp T--------SCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred C--------CcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 0 01112346899999876469999986 9999988 8999999999999999999999999994 899999
Q ss_pred CceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhH
Q 009756 392 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA 471 (526)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 471 (526)
||+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..+. .. ..
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-~~-----~~ 485 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-AP-----KA 485 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CC-----CH
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC-CC-----CH
Confidence 9999999999999999999999999999999999999999999999999999998888999999998743 22 45
Q ss_pred HHHHHHHHhc-CCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 472 EDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 472 ~~l~~~l~~~-l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
++++++++++ |+.|++|+.+.+++ ||+|++||++|++|++++.+.
T Consensus 486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence 7899999997 99999999999988 999999999999999998764
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=9.1e-74 Score=600.16 Aligned_cols=486 Identities=21% Similarity=0.277 Sum_probs=405.1
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 110 Y~eL~~~v~~lA~~-L---~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~ 185 (652)
T 1pg4_A 110 YRELHRDVCRFANT-L---LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVIT 185 (652)
T ss_dssp HHHHHHHHHHHHHH-H---HHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCC
Q 009756 81 DQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE 151 (526)
Q Consensus 81 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 151 (526)
++... ..+.+.....+ ......++.++....... ........|+++++....... .....+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 255 (652)
T 1pg4_A 186 ADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID----WQEGRDLWWRDLIEKASPEHQ-PEAMNA 255 (652)
T ss_dssp ESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC----CCBTTEEEHHHHHTTSCSCCC-CCCEET
T ss_pred cCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc----ccCCCceeHHHHHhhcCCCCC-ccccCC
Confidence 87642 23333332211 002456777764321100 001123567777765433221 123467
Q ss_pred CCeEEEEecCCCCCCccceeecchhHHHHHH-hhHhHhCCcCCcEEEEecccccchhh-HHHHHHHhhcceeeeecc---
Q 009756 152 WQSIALGYTSGTTASPKGVVVSHRGAYLMSL-NGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALCGTSICLRQ--- 226 (526)
Q Consensus 152 ~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~--- 226 (526)
+++++|+|||||||.||||+++|.+++.... .....++++++|++++..|++|..++ ...+.++..|+++++.+.
T Consensus 256 ~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~ 335 (652)
T 1pg4_A 256 EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335 (652)
T ss_dssp TSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTT
T ss_pred CCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCC
Confidence 8999999999999999999999999877664 34556789999999999999999998 456677788888888754
Q ss_pred -cCHHHHHHHHHhcCceeeeccHHHHHHHHccCC--CCCCCCCCceeeEeccCCCCCHHHHHHHh-hcC---Ceeecccc
Q 009756 227 -VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP--EDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG---FRITHTYG 299 (526)
Q Consensus 227 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~---~~i~~~YG 299 (526)
.++..+++.++++++|+++++|++++.|.+... ....+ +++||.+++|||++++++.+++. .++ +++++.||
T Consensus 336 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG 414 (652)
T 1pg4_A 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 414 (652)
T ss_dssp SSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBC
T ss_pred CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEcccc
Confidence 588999999999999999999999999998754 22334 89999999999999999999998 456 89999999
Q ss_pred cccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcC--ccccccccCCh
Q 009756 300 LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--SCVMKGYLKNP 377 (526)
Q Consensus 300 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~~ 377 (526)
+||+++.++...... .....+++|.|++++ +++|+|++ |++++.| +.|||+++| |+++.||++++
T Consensus 415 ~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~ 481 (652)
T 1pg4_A 415 QTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-GHPQEGA--TEGNLVITDSWPGQARTLFGDH 481 (652)
T ss_dssp CGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-CCBCCSS--EEEEEEECSCCTTCCCEETTCH
T ss_pred CcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-CCCcCCC--ceEEEEEccCCCchhhhhcCCH
Confidence 999987665432110 112347899999999 69999987 9999987 899999999 78999999999
Q ss_pred hhhhhhh---cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756 378 KANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 454 (526)
Q Consensus 378 ~~~~~~~---~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 454 (526)
+.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.+||+|.+|+|++.+++..|+.+++
T Consensus 482 e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a 561 (652)
T 1pg4_A 482 ERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561 (652)
T ss_dssp HHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEE
Confidence 9887776 3789999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
+|++.++.... .+..++|+++++++|+.|++|+.+++++ ||+|++||++|+.|++++.+.
T Consensus 562 ~Vv~~~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 562 YVTLNHGEEPS--PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEECTTCCCC--HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEECCCCCCC--HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 99998765321 1256899999999999999999999998 999999999999999999865
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=9.4e-74 Score=584.35 Aligned_cols=454 Identities=25% Similarity=0.367 Sum_probs=383.5
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 32 y~el~~~~~~~A~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~ 107 (504)
T 1t5h_X 32 HAELRARVEAVAAR-L---HADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI 107 (504)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCC----CCcCCCCCCCCCCe
Q 009756 81 --DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGD----PEFAWKPPEDEWQS 154 (526)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 154 (526)
+++....+. .... . ..++.++ +++.... ..........++++
T Consensus 108 ~~~~~~~~~~~---~~~~-------~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (504)
T 1t5h_X 108 AVGRQVADAIF---QSGS-------G-ARIIFLG---------------------DLVRDGEPYSYGPPIEDPQREPAQP 155 (504)
T ss_dssp CC--CHHHHHH---HHCC-------C-CEEEEGG---------------------GTEETTEECCCSCCCCCCCCCTTSE
T ss_pred ecchhhhhhhh---hccc-------c-ceeEEec---------------------chhhcCcccccCCccCCCCCCCCCe
Confidence 665433321 1111 1 1122221 1111110 00011123567899
Q ss_pred EEEEecCCCCCCccceeecchhHHHHHHhhHhHhCC--cCCcEEEEecccccchhhH-HHHHHHhhcceeeeecccCHHH
Q 009756 155 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM--NEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKA 231 (526)
Q Consensus 155 a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 231 (526)
++|+|||||||.||+|.++|+++.+.+......+++ .+++++++.+|++|..++. ..+.++..|+++++.+.+++..
T Consensus 156 a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 235 (504)
T 1t5h_X 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD 235 (504)
T ss_dssp EEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHH
T ss_pred EEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHH
Confidence 999999999999999999999999888887777777 8899999999999999984 5667777888888888899999
Q ss_pred HHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcc
Q 009756 232 VYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPAS 308 (526)
Q Consensus 232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~ 308 (526)
+++.++++++|+++++|+++..|.+.... .... ++++|.+++||+++++++.+++. .+++++++.||+||++ .+.
T Consensus 236 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~ 313 (504)
T 1t5h_X 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSL 313 (504)
T ss_dssp HHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEE
T ss_pred HHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-ccc
Confidence 99999999999999999999999886522 2333 78999999999999999999998 4589999999999983 222
Q ss_pred ccccCCCCCCCCcccccccccccceeeeecCCceeecCCCC---CccCCCCCceEEEEEc-CccccccccCChhhhhhhh
Q 009756 309 VCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTN---QPVPADGKTIGEIVMR-GSCVMKGYLKNPKANEEAF 384 (526)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g---~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~ 384 (526)
. .. ....+++|.|.+++ +++++|.+ + ++++.| +.|||+++ |+.++.||+++++.+...|
T Consensus 314 ~-~~------------~~~~~~~g~p~~~~-~~~i~~~~-~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~~f 376 (504)
T 1t5h_X 314 Y-MR------------QPKTGTEMAPGFFS-EVRIVRIG-GGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKL 376 (504)
T ss_dssp E-EE------------SCSSSSEEBCCTTC-CEEEECTT-SCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHE
T ss_pred c-cc------------CCCCCccccCCCCC-ceeEEecc-CCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhhhh
Confidence 1 11 11236789999999 69999987 5 888887 79999999 9999999999999999999
Q ss_pred cCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch
Q 009756 385 ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE 464 (526)
Q Consensus 385 ~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (526)
.+|||+|||+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|++.++...
T Consensus 377 ~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~ 456 (504)
T 1t5h_X 377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL 456 (504)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCC
T ss_pred cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999998876543
Q ss_pred hhhhhhHHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756 465 LDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 514 (526)
Q Consensus 465 ~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~ 514 (526)
..+++++++++ +|+.|++|+.+.+++ ||+|++||++|++|++++.
T Consensus 457 -----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 457 -----SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp -----CHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred -----CHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 45789999998 999999999999998 9999999999999999864
No 13
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-73 Score=599.14 Aligned_cols=489 Identities=21% Similarity=0.276 Sum_probs=401.0
Q ss_pred CccchhhhhhcccccccCcc-CCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPL-LFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 79 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~-~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 79 (526)
|+||.++++++|++ | + ++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus 116 Y~eL~~~v~~lA~~-L---~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li 191 (663)
T 1ry2_A 116 YKELLEEVCQVAQV-L---TYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVI 191 (663)
T ss_dssp HHHHHHHHHHHHHH-H---HHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEE
Confidence 78999999999999 9 9 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EccchH---------HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCC
Q 009756 80 VDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPED 150 (526)
Q Consensus 80 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 150 (526)
+++... ..+.+.....+ ..+.++.++....... . ........|.+++........ ..+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 260 (663)
T 1ry2_A 192 TTDESNRGGKVIETKRIVDDALRETP-------GVRHVLVYRKTNNPSV--A-FHAPRDLDWATEKKKYKTYYP-CTPVD 260 (663)
T ss_dssp EESBCCBTTBCCBHHHHHHHHTTSCT-------TCCEEEEECSSCCSSC--C-CCSSSEEEHHHHHTTSCSCCC-CCCEE
T ss_pred EccccccCCcccchHHHHHHHHHhCC-------CCceEEEEecCCCCcc--c-cCCCccccHHHHHhhcCCCCC-ccccC
Confidence 987642 22333322222 3566777764321000 0 001223567777764432221 12356
Q ss_pred CCCeEEEEecCCCCCCccceeecchhHHHHHHh-hHhHhCCcCCcEEEEecccccchhh-HHHHHHHhhcceeeeecc--
Q 009756 151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALCGTSICLRQ-- 226 (526)
Q Consensus 151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~-- 226 (526)
++++++|+|||||||.||||+++|.+++..... ....++++++|++++..|++|..+. ...+.+++.|+++++++.
T Consensus 261 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~ 340 (663)
T 1ry2_A 261 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTP 340 (663)
T ss_dssp TTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCT
T ss_pred CCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCC
Confidence 789999999999999999999999998766643 4456789999999999999999988 445677788888888753
Q ss_pred --cCHHHHHHHHHhcCceeeeccHHHHHHHHccCCC--CCCCCCCceeeEeccCCCCCHHHHHHHh-hcC---Ceeeccc
Q 009756 227 --VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMS-QKG---FRITHTY 298 (526)
Q Consensus 227 --~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~---~~i~~~Y 298 (526)
.++..+++.|+++++|+++++|++++.|.+.... ...+ +++||.+++|||++++++.+++. .++ +++++.|
T Consensus 341 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~Y 419 (663)
T 1ry2_A 341 AYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTY 419 (663)
T ss_dssp TSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECB
T ss_pred CCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeE
Confidence 5789999999999999999999999999887542 2334 89999999999999999999998 456 8999999
Q ss_pred ccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCC-CCCceEEEEEcC--ccccccccC
Q 009756 299 GLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA-DGKTIGEIVMRG--SCVMKGYLK 375 (526)
Q Consensus 299 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~-~~~~~Gel~v~~--~~~~~gy~~ 375 (526)
|+||+++.++...... ......+++|.|++++ +++|+|+++|++++. | +.|||+++| |+++.||++
T Consensus 420 G~TE~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~v~i~d~~~g~~v~~~g--~~Gel~i~g~~p~~~~gy~~ 488 (663)
T 1ry2_A 420 WQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWK 488 (663)
T ss_dssp CCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETT
T ss_pred CCccccCeeeccCCCC--------CcccCCCccccCcCCC-eEEEEcCCCCCcCCCCC--cceEEEEecCCCchhccccc
Confidence 9999987665532100 0112347899999999 699999956999987 5 799999999 589999999
Q ss_pred Chhhhhhhhc---CCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCcee
Q 009756 376 NPKANEEAFA---NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452 (526)
Q Consensus 376 ~~~~~~~~~~---~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 452 (526)
+++.+...|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|.|.+++|++.+++..|+.+
T Consensus 489 ~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~ 568 (663)
T 1ry2_A 489 NHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568 (663)
T ss_dssp CHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCC
T ss_pred ChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEE
Confidence 9998888773 7899999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEEEecCCCc-----hhhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 453 CAFVTLKPEAD-----ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 453 ~~~v~~~~~~~-----~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
+++|+++++.. .++..+..++|+++++++|+.|++|+.+++++ ||+|++||++|+.|++++.+.
T Consensus 569 ~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 569 AAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp EEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred EEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 99999987643 11001257899999999999999999999998 999999999999999988764
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.7e-75 Score=599.65 Aligned_cols=473 Identities=21% Similarity=0.297 Sum_probs=311.3
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 58 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~ 133 (544)
T 3o83_A 58 YIELDRLSTNLATR-L---AEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIG 133 (544)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756 81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI 155 (526)
Q Consensus 81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a 155 (526)
++... ........... ....++.++.... ...+.++...............+++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~d~a 194 (544)
T 3o83_A 134 SRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQAT------------DFGLLDWIETPAETFVDFSSTPADEVA 194 (544)
T ss_dssp ETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTT------------SEEHHHHHHSCCSSCCCCCCCCTTSEE
T ss_pred ccccccccHHHHHHHHhhccc-------CcceEEEecCCcc------------ccchhhhhhcccccccccccCCccceE
Confidence 87653 33333333322 3455555544311 123444444433322222345788999
Q ss_pred EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH--HHHHHHhhcceeeeecccCHHHHH
Q 009756 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS--YTWSLAALCGTSICLRQVTAKAVY 233 (526)
Q Consensus 156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 233 (526)
+|+|||||||.||+|+++|+++.+.+......+++.+++++++.+|++|.+++. ..+.++..|+++++.+.+++..++
T Consensus 195 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 274 (544)
T 3o83_A 195 FFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCF 274 (544)
T ss_dssp EEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHH
Confidence 999999999999999999999999999998899999999999999999998876 366777788888888889999999
Q ss_pred HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccccc
Q 009756 234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAW 312 (526)
Q Consensus 234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~ 312 (526)
+.++++++|+++++|+++..|++........ ++++|.+++||+++++++.+++. .+++++++.||+||++..++...
T Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~- 352 (544)
T 3o83_A 275 SIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLD- 352 (544)
T ss_dssp HHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTT-
T ss_pred HHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCC-
Confidence 9999999999999999999999886655555 88999999999999999999998 45999999999999874333221
Q ss_pred CCCCCCCCcccccccccccceee-eecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeee
Q 009756 313 KPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH 390 (526)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~ 390 (526)
........++|.|+ ++. +++|+|++ +++++.| +.|||+++|++++.||+++++.+...| .+|||+
T Consensus 353 ---------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~ 419 (544)
T 3o83_A 353 ---------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYY 419 (544)
T ss_dssp ---------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEE
T ss_pred ---------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeE
Confidence 11122346889996 666 69999966 9999998 899999999999999999999999999 589999
Q ss_pred cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL 470 (526)
Q Consensus 391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 470 (526)
|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..|+.++++++..+.. . .
T Consensus 420 TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-~-----~ 493 (544)
T 3o83_A 420 SGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE-L-----K 493 (544)
T ss_dssp EEEEEEECTTSCEEEEEEEC------------------------------------------------------------
T ss_pred cCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC-C-----C
Confidence 999999999999999999999999999999999999999999999999999999999899999999877532 1 4
Q ss_pred HHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756 471 AEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 517 (526)
Q Consensus 471 ~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~ 517 (526)
..++++++++ +|+.|++|+.+.+++ ||+|++||++|++|++++.+..
T Consensus 494 ~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 494 AVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 5778888888 799999999999988 9999999999999999987643
No 15
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.4e-75 Score=597.24 Aligned_cols=469 Identities=26% Similarity=0.420 Sum_probs=307.9
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 34 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 109 (509)
T 3ivr_A 34 HRDYLARAERLASG-L---LRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA 109 (509)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+.+....+........ ....++.+++.. ..+.++...............++++++|+||
T Consensus 110 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T 168 (509)
T 3ivr_A 110 GTDYRDIVAGVLPSLG-------GVKKAYAIGDGS--------------GPFAPFKDLASDTPFSAPEFGAADGFVIIHT 168 (509)
T ss_dssp CSTTHHHHHHHGGGCS-------SCCEEEESSCCC--------------SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEE
T ss_pred CcchhhhHHhhhcccC-------CceEEEEcCCCC--------------cChhhHhhccCCCCCCcCCCCccccEEEEeC
Confidence 9987776544443333 455666665421 1122222211111122234578899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcC
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHG 240 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 240 (526)
|||||.||+|+++|+++.+........+++++++++++.+|++|..++...+..++.+++.++...+++..+++.+++++
T Consensus 169 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 248 (509)
T 3ivr_A 169 AAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHK 248 (509)
T ss_dssp EC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHC
Confidence 99999999999999999999999888999999999999999999999988888888888888888889999999999999
Q ss_pred ceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccCCCCCC
Q 009756 241 VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWKPEWDS 318 (526)
Q Consensus 241 ~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~ 318 (526)
+|+++++|+++..|++.. .... ++++|.++.+|++ +..+.+. .+ ++++++.||+||++++++.+...
T Consensus 249 ~t~~~~~p~~~~~l~~~~--~~~~-l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----- 317 (509)
T 3ivr_A 249 VTVMAEFAPMLGNILDQA--APAQ-LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR----- 317 (509)
T ss_dssp CCEEEEETTHHHHHHHHC--CGGG-GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-----
T ss_pred CcEEEecHHHHHHHHhcc--cccc-hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-----
Confidence 999999999999999886 2233 7899999999987 7777776 44 89999999999998766654321
Q ss_pred CCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEc
Q 009756 319 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKH 398 (526)
Q Consensus 319 ~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~ 398 (526)
.....+|.|++++ +++|+|++ +++++.| +.|||+++|++++.||+++++.+...|.+|||+|||+|+++
T Consensus 318 -------~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~ 386 (509)
T 3ivr_A 318 -------DRPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD 386 (509)
T ss_dssp -------GSTTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC
T ss_pred -------cCCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC
Confidence 1124589999999 69999988 9999998 89999999999999999999999999999999999999999
Q ss_pred CCceEEEeccc--cceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHH
Q 009756 399 PDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 476 (526)
Q Consensus 399 ~~g~~~~~GR~--~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 476 (526)
+||++++.||. +|+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++..++... ..+++++
T Consensus 387 ~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~-----~~~~l~~ 461 (509)
T 3ivr_A 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI-----AADALAE 461 (509)
T ss_dssp TTSCEEEEEEC---------------------------------------------------------------------
T ss_pred CCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC-----CHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999889999999998876544 5688999
Q ss_pred HHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCccc
Q 009756 477 FCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKM 521 (526)
Q Consensus 477 ~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~~ 521 (526)
+++++|+.|++|+.+.+++ ||+|++||++|++|++++.+....+.
T Consensus 462 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~~ 507 (509)
T 3ivr_A 462 FVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHHH 507 (509)
T ss_dssp ----------------------------------------------
T ss_pred HHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccccC
Confidence 9999999999999999888 99999999999999999988766543
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.2e-72 Score=580.02 Aligned_cols=472 Identities=25% Similarity=0.318 Sum_probs=385.1
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 51 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 51 YGELEERARRFASA-L---RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCC-CeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 159 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~ 159 (526)
+++....+.+.....+ .. ..++.++.... .......+++++....... ......++|+++++|
T Consensus 127 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~ 190 (529)
T 2v7b_A 127 SGALVQNVTQALESAE-------HDGCQLIVSQPRES--------EPRLAPLFEELIDAAAPAA-KAAATGCDDIAFWLY 190 (529)
T ss_dssp EGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHHHHHHTSCCCS-SCCCCCTTSEEEEEE
T ss_pred chhhhhHHHHHHhhcc-------ccCceEEEeccccc--------ccccccchhhhhccCCCcc-cccCCCCCCeEEEEE
Confidence 9987766655543222 22 44444443211 0011235666665333221 122357789999999
Q ss_pred cCCCCCCccceeecchhH-HHHHHhhHhHhCCcCCcEEEEecccccchhhHHH-HHHHhhcceeeee-cccCHHHHHHHH
Q 009756 160 TSGTTASPKGVVVSHRGA-YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAALCGTSICL-RQVTAKAVYTAI 236 (526)
Q Consensus 160 TSGsTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~i 236 (526)
||||||.||+|+++|+++ .+........+++.+++++++..|++|..++... +.++..|+++++. ..+++..+++.+
T Consensus 191 TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i 270 (529)
T 2v7b_A 191 SSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARL 270 (529)
T ss_dssp C-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHH
T ss_pred CCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHH
Confidence 999999999999999998 5655555556788899999999999999998654 4566677777766 567999999999
Q ss_pred HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCccccccCCC
Q 009756 237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPE 315 (526)
Q Consensus 237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~ 315 (526)
+++++|+++++|+++..+.......... ..++|.+++|||++++++.+++.+ +++++++.||+||++++++.+....
T Consensus 271 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~- 348 (529)
T 2v7b_A 271 VEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA- 348 (529)
T ss_dssp HHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-
T ss_pred HHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-
Confidence 9999999999999999999876544332 248999999999999999999984 6999999999999976554432110
Q ss_pred CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCcee
Q 009756 316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA 395 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~ 395 (526)
....++|.|++++ +++|+|++ |++++.| +.|||+++|++++.||+++++.+...|.+|||+|||+|
T Consensus 349 ----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~ 414 (529)
T 2v7b_A 349 ----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKY 414 (529)
T ss_dssp ----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEE
T ss_pred ----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceE
Confidence 2236899999999 69999976 9999988 89999999999999999999999999999999999999
Q ss_pred EEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHH
Q 009756 396 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVS 475 (526)
Q Consensus 396 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 475 (526)
++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++. ++..++.++++++..++.... ....++++
T Consensus 415 ~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~--~~~~~~l~ 491 (529)
T 2v7b_A 415 CRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS--EILAEELK 491 (529)
T ss_dssp EECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC--HHHHHHHH
T ss_pred EECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc--hhHHHHHH
Confidence 999999999999999999999999999999999999999999999999 555678899999987664211 11446899
Q ss_pred HHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756 476 KFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 511 (526)
Q Consensus 476 ~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~ 511 (526)
++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus 492 ~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 492 AFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp HHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred HHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99999999999999999988 9999999999999986
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=5.6e-73 Score=580.09 Aligned_cols=470 Identities=18% Similarity=0.203 Sum_probs=393.2
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 29 y~el~~~~~~lA~~-L---~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~ 104 (512)
T 3fce_A 29 YKQLKEDSDALAHW-I---SSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS 104 (512)
T ss_dssp HHHHHHHHHHHHHH-H---HHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEe
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCC-eEEEEccCCCCchhhhhhhhcCcccHHHHHhhCC-CCcCCCCCCCCCCeEEEE
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTP-HLIVIGDESCDSKQLEYALARGAIEYEKFLETGD-PEFAWKPPEDEWQSIALG 158 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~i~ 158 (526)
+..... . ... .++.. ..+.++..... ..........++++++|+
T Consensus 105 ~~~~~~---------~-------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~ 150 (512)
T 3fce_A 105 ATAVTV---------T-------DLPVRIVSE------------------DNLKDIFFTHKGNTPNPEHAVKGDENFYII 150 (512)
T ss_dssp SSCCCS---------S-------CCSSEEEET------------------HHHHHHHHHTTTCCCCGGGSCCTTSEEEEE
T ss_pred cCcccc---------c-------ccccceech------------------hhhhhhcccccccCCCccccCCCCCeEEEE
Confidence 754311 0 011 11111 11222222111 111112235678999999
Q ss_pred ecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHH
Q 009756 159 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTA 235 (526)
Q Consensus 159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~ 235 (526)
|||||||.||+|+++|.++.+.+......+++.+++++++.+|++|..++...+.++..|+++++.+. .++..+++.
T Consensus 151 ~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 230 (512)
T 3fce_A 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS 230 (512)
T ss_dssp EECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH
T ss_pred ECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHH
Confidence 99999999999999999999999988888999999999999999999998888888888998888865 689999999
Q ss_pred HHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccC
Q 009756 236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWK 313 (526)
Q Consensus 236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~ 313 (526)
++++++|+++++|+++..++......... ++++|.+++||+++++++.+++. .+ ++++++.||+||+++.++.....
T Consensus 231 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 309 (512)
T 3fce_A 231 LEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309 (512)
T ss_dssp HHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECC
T ss_pred HHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEec
Confidence 99999999999999999998887666555 89999999999999999999998 45 89999999999998776654322
Q ss_pred CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc----CCee
Q 009756 314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA----NGWF 389 (526)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~ 389 (526)
.. ........++|.|.+++ +++|+|++ |++++.| +.|||+++|++++.||+++++.+...|. +|||
T Consensus 310 ~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 379 (512)
T 3fce_A 310 EE------VLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY 379 (512)
T ss_dssp HH------HHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred cc------cccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEE
Confidence 10 11112346789999999 69999976 9999988 7999999999999999999999999984 5699
Q ss_pred ecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhh
Q 009756 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGK 469 (526)
Q Consensus 390 ~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 469 (526)
+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++...++.++++++..+.... +...
T Consensus 380 ~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~-~~~~ 457 (512)
T 3fce_A 380 KTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE-KEFK 457 (512)
T ss_dssp EEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS-SHHH
T ss_pred eCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc-chhh
Confidence 99999999 799999999999999999999999999999999999999999999988888899999998765432 1223
Q ss_pred hHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCCccc
Q 009756 470 LAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKM 521 (526)
Q Consensus 470 ~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~~ 521 (526)
..++++++++++|+.|++|+.+.+++ ||+|++||++|++|++.+.+...++.
T Consensus 458 ~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp HHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred hHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 56789999999999999999999988 99999999999999999998876543
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.5e-72 Score=586.93 Aligned_cols=469 Identities=23% Similarity=0.332 Sum_probs=400.3
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus 53 Y~eL~~~a~~lA~~-L---~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~ 128 (617)
T 3rg2_A 53 YRELNQAADNLACS-L---RRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIA 128 (617)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEe
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchH-----HHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeE
Q 009756 81 DQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI 155 (526)
Q Consensus 81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a 155 (526)
+.... ........... ....+..++.... ..+.+.......... ..+..+++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~a 187 (617)
T 3rg2_A 129 DRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSGE-------------HNLQDAINHPAEDFT-ATPSPADEVA 187 (617)
T ss_dssp ETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCST-------------TBHHHHHHSCCSSCC-CCCCCTTSEE
T ss_pred cccccccccHHHHHHHhhcCC-------ccceeeecccccc-------------cchhhhhcccccccC-CCCCCCCCeE
Confidence 87654 33333333333 3445555443321 234444443332222 2335678999
Q ss_pred EEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH--HHHHHHhhcceeeeecccCHHHHH
Q 009756 156 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS--YTWSLAALCGTSICLRQVTAKAVY 233 (526)
Q Consensus 156 ~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 233 (526)
+|+|||||||.||+|+++|+++.+.+......+++.+++++++.+|++|.+++. ..+.+++.|+++++.+..++..++
T Consensus 188 ~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 267 (617)
T 3rg2_A 188 YFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF 267 (617)
T ss_dssp EEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred EEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHH
Confidence 999999999999999999999999999988889999999999999999988875 477788889999888888999999
Q ss_pred HHHHhcCceeeeccHHHHHHHHccCCCCC--CCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCcccc
Q 009756 234 TAIATHGVTHFCAAPVVLNAIANASPEDT--ILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVC 310 (526)
Q Consensus 234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~ 310 (526)
+.++++++|++.++|+++..|.+...... .. ++++|.+++|||++++++.+++. .+++++++.||+||++..++..
T Consensus 268 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 346 (617)
T 3rg2_A 268 PLIEKHQVNVTALVPPAVSLWLQALIEGESRAQ-LASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRL 346 (617)
T ss_dssp HHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTT-TTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCT
T ss_pred HHHHHhCCcEEEcchHHHHHHHHhhhccccccc-CCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccC
Confidence 99999999999999999999987543222 23 88999999999999999999998 5699999999999987543322
Q ss_pred ccCCCCCCCCcccccccccccceee-eecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCe
Q 009756 311 AWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGW 388 (526)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~ 388 (526)
. ........++|.|+ ++. +++|+|++ ++++|.| +.|||+|+|++++.||+++++.+...| .++|
T Consensus 347 ~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~ 412 (617)
T 3rg2_A 347 D----------DSAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGF 412 (617)
T ss_dssp T----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSC
T ss_pred C----------CcccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCc
Confidence 1 11122335789997 455 69999976 9999998 899999999999999999999999999 5899
Q ss_pred eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG 468 (526)
Q Consensus 389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 468 (526)
|+|||+|++++||.++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++..+..
T Consensus 413 yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------ 486 (617)
T 3rg2_A 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------ 486 (617)
T ss_dssp EEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------
T ss_pred eecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999888889999999987643
Q ss_pred hhHHHHHHHHHh-cCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 469 KLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 469 ~~~~~l~~~l~~-~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
...++++++++ .|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus 487 -~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 487 -RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp -CHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 34778999988 699999999999998 999999999999999988653
No 19
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.2e-72 Score=575.25 Aligned_cols=467 Identities=20% Similarity=0.239 Sum_probs=399.6
Q ss_pred CccchhhhhhcccccccCccC-CCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLL-FPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 79 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~-~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 79 (526)
|+||.++++++|++ | ++ .|.++|++|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|
T Consensus 29 y~eL~~~~~~~A~~-L---~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li 104 (511)
T 3e7w_A 29 YQELWEQSDRAAAA-I---QKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLI 104 (511)
T ss_dssp HHHHHHHHHHHHHH-H---TTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHH-H---HHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEE
Confidence 78999999999999 8 77 4888999999999999999999999999999999999999999999999999999999
Q ss_pred EccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEe
Q 009756 80 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 159 (526)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~ 159 (526)
+++..... ... ......++.+++..............++++++|+|
T Consensus 105 ~~~~~~~~----------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 150 (511)
T 3e7w_A 105 HAAGLSID----------------AVG------------------QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIY 150 (511)
T ss_dssp ESSSCCTT----------------CCC------------------CSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEE
T ss_pred ecccccch----------------hcc------------------cccceecHhhhhccccCCccccccCCCCCeEEEEE
Confidence 97543110 000 00112344455544333222223356789999999
Q ss_pred cCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHH
Q 009756 160 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAI 236 (526)
Q Consensus 160 TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i 236 (526)
||||||.||+|+++|+++.+.+.+....+++..++++++..|++|..++...+.++..|+++++.+. .++..+++.+
T Consensus 151 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i 230 (511)
T 3e7w_A 151 TSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEEL 230 (511)
T ss_dssp ECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHH
T ss_pred CCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHH
Confidence 9999999999999999999999988888999999999999999999998888888888888888765 6899999999
Q ss_pred HhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccCC
Q 009756 237 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWKP 314 (526)
Q Consensus 237 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~ 314 (526)
+++++|+++++|+++..++......... ++++|.+++||+++++++.+++. .+ ++++++.||+||+++.++.+....
T Consensus 231 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~ 309 (511)
T 3e7w_A 231 KKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN 309 (511)
T ss_dssp HHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECH
T ss_pred HHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccc
Confidence 9999999999999999999887655555 89999999999999999999998 45 899999999999988776543221
Q ss_pred CCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc--CC--eee
Q 009756 315 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--NG--WFH 390 (526)
Q Consensus 315 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g--~~~ 390 (526)
+ ........++|.|.+++ +++|+|++ |++++.| +.|||+++|++++.||+++++.+...|. +| ||+
T Consensus 310 ~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~ 379 (511)
T 3e7w_A 310 D------VISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYR 379 (511)
T ss_dssp H------HHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEE
T ss_pred c------ccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEe
Confidence 1 00112235799999999 69999987 9999988 8999999999999999999999999983 44 799
Q ss_pred cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL 470 (526)
Q Consensus 391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 470 (526)
|||+|++ +||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++..++.... ..+.
T Consensus 380 TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~-~~~~ 457 (511)
T 3e7w_A 380 TGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEK-EFQL 457 (511)
T ss_dssp EEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSS-HHHH
T ss_pred CCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccc-hhhH
Confidence 9999999 5999999999999999999999999999999999999999999999888889999999988764321 2225
Q ss_pred HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756 471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 518 (526)
Q Consensus 471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~ 518 (526)
.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+..-
T Consensus 458 ~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 458 TSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 6889999999999999999999998 99999999999999999987543
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.9e-72 Score=578.24 Aligned_cols=451 Identities=18% Similarity=0.251 Sum_probs=380.4
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 67 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~ 142 (563)
T 1amu_A 67 YHELNVKANQLARI-F---IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT 142 (563)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+++....+.. .. ....+..++.... ... .......+..++|+++|+||
T Consensus 143 ~~~~~~~~~~----~~-------~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~~~~d~a~i~~T 190 (563)
T 1amu_A 143 QKHLVHLIHN----IQ-------FNGQVEIFEEDTI--------------------KIR-EGTNLHVPSKSTDLAYVIYT 190 (563)
T ss_dssp CGGGHHHHTT----SC-------CCSEEEECCCSTT--------------------TTS-CCSCCCCCCCTTSEEEEEEE
T ss_pred cCchhhhhhh----cc-------ccCceeeecchhh--------------------ccc-cCccCCCCCCCCCeEEEEEC
Confidence 9876543221 11 1122333322100 000 01111123467899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA 237 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~ 237 (526)
|||||.||||++||+++.+........++++++|++++..|++|..++...+.+++.|+++++.+. .++..+++.++
T Consensus 191 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~ 270 (563)
T 1amu_A 191 SGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYIN 270 (563)
T ss_dssp C-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHH
T ss_pred CCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHH
Confidence 999999999999999999888877778889999999999999999998877888888888888754 68899999999
Q ss_pred hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccCCCCC
Q 009756 238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 317 (526)
Q Consensus 238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 317 (526)
++++|++.++|+++..|... . ++++|.+++||+++++++.+++.+. +++++.||+||++.+++.+......
T Consensus 271 ~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~- 341 (563)
T 1amu_A 271 QKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-VTYINAYGPTETTICATTWVATKET- 341 (563)
T ss_dssp HTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-SEEEEEECCGGGSSCSEEEECCSSC-
T ss_pred HcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-CeEEEEECcCHHhHhheeeeccccc-
Confidence 99999999999998877543 2 6889999999999999999999864 8999999999998766654322110
Q ss_pred CCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcC-------Ceee
Q 009756 318 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------GWFH 390 (526)
Q Consensus 318 ~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g~~~ 390 (526)
.....++|.|++++ +++|+|++ |++++.| +.|||+++|++++.||+++++.+...|.+ +||+
T Consensus 342 -------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~ 410 (563)
T 1amu_A 342 -------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYK 410 (563)
T ss_dssp -------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEE
T ss_pred -------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEe
Confidence 11236899999999 69999976 9999988 89999999999999999999999999853 4999
Q ss_pred cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL 470 (526)
Q Consensus 391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 470 (526)
|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..... .
T Consensus 411 TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-------~ 483 (563)
T 1amu_A 411 TGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-------P 483 (563)
T ss_dssp EEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-------C
T ss_pred cCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC-------C
Confidence 999999999999999999999999999999999999999999999999999999988889999999976433 3
Q ss_pred HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756 471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 514 (526)
Q Consensus 471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~ 514 (526)
.++|+++++++|+.|++|+.+++++ ||+|++||++|++|++...
T Consensus 484 ~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 484 LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 5789999999999999999999998 9999999999999987543
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.2e-71 Score=571.71 Aligned_cols=469 Identities=21% Similarity=0.224 Sum_probs=380.9
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 32 y~el~~~~~~lA~~-L---~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 32 YGQLKRDSDSIAAF-I---DSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp HHHHHHHHHHHHHH-H---HHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+++....+ ....++.+. .+........+ ........++++++|+||
T Consensus 108 ~~~~~~~~---------------~~~~~~~~~------------------~~~~~~~~~~~-~~~~~~~~~~d~a~i~~T 153 (521)
T 3l8c_A 108 IEEFPLTI---------------EGISLVSLS------------------EIESAKLAEMP-YERTHSVKGDDNYYIIFT 153 (521)
T ss_dssp SSCCCSCC---------------TTSEEEEHH------------------HHHHHHHHTCC-CCCSSCCCTTSEEEEEEC
T ss_pred cCcccccc---------------ccCcccchh------------------hhhhcccccCC-cccCCCCCCCCcEEEEEc
Confidence 87642110 001111111 11111111111 111223577899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhH--hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeeccc---CHHHHHHH
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV---TAKAVYTA 235 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~ 235 (526)
|||||.||+|+++|+++.+...+.... +++..++++++..|++|..++...+.++..|+++++.+.. ++..+++.
T Consensus 154 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~ 233 (521)
T 3l8c_A 154 SGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTT 233 (521)
T ss_dssp CC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHH
T ss_pred CCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHH
Confidence 999999999999999998877766554 6778999999999999999888888888888888887653 88999999
Q ss_pred HHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccC
Q 009756 236 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWK 313 (526)
Q Consensus 236 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~ 313 (526)
++++++|++.++|+++..+.......... ++++|.+++||+++++++.+++. .+ ++++++.||+||+++.++.+...
T Consensus 234 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 312 (521)
T 3l8c_A 234 IAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEIT 312 (521)
T ss_dssp HHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEEC
T ss_pred HHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecc
Confidence 99999999999999999998876655555 89999999999999999999988 44 89999999999998777654322
Q ss_pred CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc----CCee
Q 009756 314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA----NGWF 389 (526)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~ 389 (526)
.. ........++|.|++++ +++|+|++ |++++.| +.|||+++|++++.||+++++.+...|. +|||
T Consensus 313 ~~------~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 382 (521)
T 3l8c_A 313 RE------MVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382 (521)
T ss_dssp HH------HHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred cc------cccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence 10 01112235799999999 69999987 9999988 7999999999999999999999999982 5699
Q ss_pred ecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCC-CCceeEEEEEecCCCchh--h
Q 009756 390 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER-WGESPCAFVTLKPEADEL--D 466 (526)
Q Consensus 390 ~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~--~ 466 (526)
+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++..+.. .++.++++|++.++.... .
T Consensus 383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~ 462 (521)
T 3l8c_A 383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462 (521)
T ss_dssp EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999887554 357899999998775321 1
Q ss_pred hhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcCC
Q 009756 467 KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 518 (526)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~~ 518 (526)
.....++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+...
T Consensus 463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 463 ELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp HHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred chhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 12357899999999999999999999998 99999999999999999876554
No 22
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.9e-71 Score=567.51 Aligned_cols=462 Identities=21% Similarity=0.302 Sum_probs=364.7
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++. +||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 29 y~eL~~~~~~lA~~-L---~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~ 101 (501)
T 3ipl_A 29 YQNLYCEASLLAKR-L---KAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFC 101 (501)
T ss_dssp HHHHHHHHHHHHHH-H---HTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEE
Confidence 78999999999999 8 776 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCc------hhhhhhhhc-CcccHHHHHhhCCCCcCCCCCCCCCC
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS------KQLEYALAR-GAIEYEKFLETGDPEFAWKPPEDEWQ 153 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 153 (526)
+.+..... ..++......... ......... .....+................++++
T Consensus 102 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 164 (501)
T 3ipl_A 102 TLPLELRG-----------------FQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDD 164 (501)
T ss_dssp SSCCCCTT-----------------SEEEETTC--------------------------------CCHHHHTCCCCCTTS
T ss_pred cccccccc-----------------ccccccccceeeeeecccccccccccccccccchhhccccCCcccccccCCCCCC
Confidence 87643221 1111110000000 000000000 00001111111111111122357789
Q ss_pred eEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHHHHH
Q 009756 154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY 233 (526)
Q Consensus 154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 233 (526)
+++|+|||||||.||+|.++|+++.+........+++++++++++..|++|.+++...+.++..|+++++.+.+++..++
T Consensus 165 ~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~ 244 (501)
T 3ipl_A 165 IASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQIL 244 (501)
T ss_dssp EEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred eEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHH
Confidence 99999999999999999999999999999888889999999999999999999998888888899999988889999999
Q ss_pred HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCccccccC
Q 009756 234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWK 313 (526)
Q Consensus 234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 313 (526)
+.++++++|+++++|+++..|.+..... ..++|.+++||+++++++.+++.++++++++.||+||+++.++.+..
T Consensus 245 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~- 319 (501)
T 3ipl_A 245 TMIKNERITHISLVPQTLNWLMQQGLHE----PYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP- 319 (501)
T ss_dssp HHHHHSCCCEEEECHHHHHHHHHHTCCS----CTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH-
T ss_pred HHHHHcCCcEEEchHHHHHHHHhcCCCC----cCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc-
Confidence 9999999999999999999999876543 23899999999999999999999889999999999999765544321
Q ss_pred CCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCc
Q 009756 314 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGD 393 (526)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD 393 (526)
........++|.|++++ +++|+|++. + +.|||+++|+.++.||+++++.+.. |.+|||+|||
T Consensus 320 --------~~~~~~~~~~G~p~~~~-~~~i~d~~~------~--~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGD 381 (501)
T 3ipl_A 320 --------EMLHARPDTVGMPSANV-DVKIKNPNK------E--GHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGD 381 (501)
T ss_dssp --------HHHHHCTTCCBEECTTC-EEEEESCCS------S--CCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEE
T ss_pred --------cccccCCCCCCCCCCCc-EEEEecCCC------C--CccEEEEeccchhhhhCcChhhcch-hcCCceecCC
Confidence 11122346899999999 699999761 2 5799999999999999999998887 8899999999
Q ss_pred eeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHH
Q 009756 394 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED 473 (526)
Q Consensus 394 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 473 (526)
+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++..... ..++
T Consensus 382 l~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~-------~~~~ 454 (501)
T 3ipl_A 382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI-------SKAQ 454 (501)
T ss_dssp EEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC-------CHHH
T ss_pred EEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC-------CHHH
Confidence 999999999999999999999999999999999999999999999999999998899999999875443 4578
Q ss_pred HHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 474 VSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 474 l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
++++++++|+.|++|+.+.+++ ||+|++||++|++|++...+.
T Consensus 455 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 455 LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred HHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 9999999999999999999998 999999999999999887653
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.4e-72 Score=580.88 Aligned_cols=452 Identities=21% Similarity=0.278 Sum_probs=291.0
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | +++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 103 y~el~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~ 178 (570)
T 4gr5_A 103 YGALNERANRLAHR-L---VGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVT 178 (570)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEe
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+++....+ . ... .+.+.+.. ..............++|+++|+||
T Consensus 179 ~~~~~~~~-------~-------~~~-~~~~~~~~---------------------~~~~~~~~~~~~~~~~d~a~i~~T 222 (570)
T 4gr5_A 179 SRPLSGRL-------T-------GTT-TLYVEDEA---------------------ASDAPAGNLATGVGPEDVACVMFT 222 (570)
T ss_dssp CTTTTTSS-------C-------SSE-EEECCC----------------------------CCCCCCCCCTTSEEEEECC
T ss_pred cchhhhcc-------c-------CCc-ceeeeccc---------------------cccccccccCCCCCCCCeEEEEEC
Confidence 87643211 0 111 11111110 000011111123577899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec--ccCHHHHHHHHHh
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIAT 238 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~ 238 (526)
|||||.||+|+++|+++.+.... ...+++++++++++.+|++|..+....+.++..|+++++.+ .+++..+++.+++
T Consensus 223 SGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~ 301 (570)
T 4gr5_A 223 SGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVAR 301 (570)
T ss_dssp SSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHH
T ss_pred CcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHH
Confidence 99999999999999998766554 34557889999999999998877777778888888888875 4789999999999
Q ss_pred cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCCC
Q 009756 239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEW 316 (526)
Q Consensus 239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~ 316 (526)
+++|++.++|+++..|.+.... . ++++|.+++||++++++..+++.+ + ++++++.||+||++++++.......
T Consensus 302 ~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~- 376 (570)
T 4gr5_A 302 HGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAG- 376 (570)
T ss_dssp HTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGG-
T ss_pred cCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccc-
Confidence 9999999999999999976532 2 789999999999999999888874 4 8999999999999877665432211
Q ss_pred CCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc---------CC
Q 009756 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA---------NG 387 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------~g 387 (526)
.......++|.|++++ +++|+|++ +++++.| +.|||+|+|++++.||+++++.+...|. +|
T Consensus 377 ------~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~ 446 (570)
T 4gr5_A 377 ------DLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGER 446 (570)
T ss_dssp ------GTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCE
T ss_pred ------ccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCE
Confidence 1111235689999999 69999987 9999988 8999999999999999999999999984 26
Q ss_pred eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK 467 (526)
Q Consensus 388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 467 (526)
||+|||+|++++||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++.+++.++++|+........
T Consensus 447 w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~-- 524 (570)
T 4gr5_A 447 MYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPP-- 524 (570)
T ss_dssp EEEEEEEEEECTTSCEEEEEC-----------------------------------------------------------
T ss_pred EEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCc--
Confidence 999999999999999999999999999999999999999999999999999999999988889999999876543221
Q ss_pred hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHH
Q 009756 468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 512 (526)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~ 512 (526)
..++|+++|+++|+.|++|+.+++++ ||+|++||++|++|++.
T Consensus 525 --~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 525 --DAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------
T ss_pred --CHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 56889999999999999999999888 99999999999999875
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.4e-72 Score=614.67 Aligned_cols=483 Identities=24% Similarity=0.335 Sum_probs=317.5
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+
T Consensus 91 Y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 166 (979)
T 3tsy_A 91 YSDVHVISRQIAAN-F---HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIIT 166 (979)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCC--cCCCCCCCCCCeEEEE
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE--FAWKPPEDEWQSIALG 158 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~i~ 158 (526)
+++....+....... ...++.++..... ....+...+.++....... ........++|+++|+
T Consensus 167 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~ 231 (979)
T 3tsy_A 167 EARYVDKIKPLQNDD---------GVVIVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALP 231 (979)
T ss_dssp CSTTTTTSHHHHHTS---------CCEEEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECC
T ss_pred ChHHHHHHHHHhhcC---------CceEEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEE
Confidence 988776665554322 2345555443111 0112334555554433221 1122335789999999
Q ss_pred ecCCCCCCccceeecchhHHHHHHhhHh----HhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeecccCHHHHH
Q 009756 159 YTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVY 233 (526)
Q Consensus 159 ~TSGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 233 (526)
|||||||.||+|+++|+++.+.+..... .+.+.+++++++.+|++|.+++.. .+..+..|+++++.+.+++..++
T Consensus 232 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 311 (979)
T 3tsy_A 232 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL 311 (979)
T ss_dssp BCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHH
T ss_pred eCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHH
Confidence 9999999999999999999888766543 346788999999999999999854 45667778888888889999999
Q ss_pred HHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccc
Q 009756 234 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCA 311 (526)
Q Consensus 234 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~ 311 (526)
+.++++++|++.++|+++..|.+........ ++++|.+++||+++++++.+++. .+ ++++++.||+||++++++.+.
T Consensus 312 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~ 390 (979)
T 3tsy_A 312 ELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSL 390 (979)
T ss_dssp HHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECG
T ss_pred HHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCC
Confidence 9999999999999999999999887665555 89999999999999999999998 45 899999999999987665542
Q ss_pred cCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhh-cCCeee
Q 009756 312 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH 390 (526)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~ 390 (526)
.... .......+++|.|++++ +++|+|++++++++.| +.|||+|+|++++.||+++++.+...| .+|||+
T Consensus 391 ~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~ 461 (979)
T 3tsy_A 391 GFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461 (979)
T ss_dssp GGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred CCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCccccccCChhhhhhhccCCCcEE
Confidence 1111 01112347899999999 6999998889999998 789999999999999999999999999 589999
Q ss_pred cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhh
Q 009756 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL 470 (526)
Q Consensus 391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 470 (526)
|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..++... .
T Consensus 462 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~-----~ 536 (979)
T 3tsy_A 462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL-----S 536 (979)
T ss_dssp EEEEEEECTTSCEEEEEESCC-----------------------------------------------------------
T ss_pred cCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCC-----C
Confidence 99999999999999999999999999999999999999999999999999999998889999999998766444 5
Q ss_pred HHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756 471 AEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 517 (526)
Q Consensus 471 ~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~ 517 (526)
.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++++.+..
T Consensus 537 ~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 537 EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 6789999999999999999999888 9999999999999999987643
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.2e-70 Score=569.65 Aligned_cols=446 Identities=17% Similarity=0.195 Sum_probs=365.9
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus 55 Y~eL~~~a~~lA~~-L---~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~ 130 (620)
T 4dg8_A 55 YRQLLDSAEQLSDY-L---LEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD 130 (620)
T ss_dssp HHHHHHHHHHHHHH-H---HHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEe
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
++...... . ... .+.+... .............++++++|+||
T Consensus 131 ~~~~~~~~-------~-------~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~d~a~iiyT 172 (620)
T 4dg8_A 131 CSTTPTPA-------N-------GLP-CVPVRHL-----------------------PAAPASVARPCFAADQIAYINFS 172 (620)
T ss_dssp CCSSCCCC-------T-------TSC-EEEGGGC-----------------------CCCCCCSSCCCCCTTSEEEEEEE
T ss_pred cCcccccc-------c-------CCc-eeeeccC-----------------------CcCCccccCCCCCCCCeEEEEEC
Confidence 65432100 0 011 1111000 00111111122467899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec--ccCHHHHHHHHHh
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIAT 238 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~ 238 (526)
|||||.||||+++|+++.+.+.. ...+++.++++++...|++|..++...+.++..|+++++.+ .+++..+++.+++
T Consensus 173 SGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~ 251 (620)
T 4dg8_A 173 SGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGE 251 (620)
T ss_dssp BSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHT
T ss_pred CCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHH
Confidence 99999999999999998777655 45678899999999999999999988888999999888863 5789999999999
Q ss_pred cCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc-CCeeecccccccCCCCccccccCCCC
Q 009756 239 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK-GFRITHTYGLTELTGPASVCAWKPEW 316 (526)
Q Consensus 239 ~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~ 316 (526)
+++|+++++|+++..|.+... .. ++++|.+++|||+++++..+++. .+ ++++++.||+||++.+++.+.....
T Consensus 252 ~~vt~~~~~Ps~~~~l~~~~~---~~-l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~- 326 (620)
T 4dg8_A 252 RGADSAWLTASLFNTLVDLDP---DC-LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD- 326 (620)
T ss_dssp TCCCEEEEEHHHHHHHHHHCG---GG-GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTG-
T ss_pred hCCcEEEccHHHHHHHHhcCh---hh-CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccc-
Confidence 999999999999999987533 22 78999999999999988888876 33 8999999999999877665432211
Q ss_pred CCCCcccccccccccceeeeecCCceeecCCCCCc-cCCCCCceEEEEEcCccccccccCChhhhhhhhcC--------C
Q 009756 317 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQP-VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN--------G 387 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g 387 (526)
.......++|.|++++ +++|+|++ +++ ++.| +.|||+|+|++++.||+++++.+...|.+ +
T Consensus 327 ------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~ 396 (620)
T 4dg8_A 327 ------DLEEDDIPIGKAIAGT-AVLLLDEH-GQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLR 396 (620)
T ss_dssp ------GGGSSSCCCBEECTTE-EEEEECTT-SCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEE
T ss_pred ------ccCCCCCCceecccCc-EEEEECcc-CCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCCCce
Confidence 1122336899999999 69999988 555 6777 79999999999999999999999999964 7
Q ss_pred eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhh
Q 009756 388 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK 467 (526)
Q Consensus 388 ~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 467 (526)
||+|||+|++++||+++++||.||+||++|++|+|.+||.+|.++|+|.+|+|++.++...++ ++++++....
T Consensus 397 ~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~~------ 469 (620)
T 4dg8_A 397 AYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKAD------ 469 (620)
T ss_dssp EEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECTT------
T ss_pred EEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecChH------
Confidence 999999999999999999999999999999999999999999999999999999988775333 4444443322
Q ss_pred hhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhc
Q 009756 468 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~ 516 (526)
.+.+.+.++|+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus 470 -----~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 470 -----ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp -----CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred -----HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 12345667899999999999988 999999999999999887643
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=8.3e-71 Score=561.66 Aligned_cols=445 Identities=26% Similarity=0.347 Sum_probs=358.9
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | .. |++|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 51 y~eL~~~~~~~A~~-L---~~-----~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 121 (505)
T 3nyq_A 51 YAELAAAAGATAGR-I---GG-----AGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLA 121 (505)
T ss_dssp HHHHHHHHHHHHTT-C---C--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHhh-c---cC-----CCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEE
Confidence 78999999999999 8 52 789999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+.+.... .... ....+.++.. ..........+++++++|+||
T Consensus 122 ~~~~~~~-----~~~~--------~~~~~~~~~~-------------------------~~~~~~~~~~~~~d~a~i~~T 163 (505)
T 3nyq_A 122 PPDAELP-----PALG--------ALERVDVDVR-------------------------ARGAVPEDGADDGDPALVVYT 163 (505)
T ss_dssp CTTCCCC-----GGGT--------TSEEEECCTT-------------------------CCCCCCCCCCCTTSEEEEEEE
T ss_pred CCccccc-----hhhc--------cccccccccc-------------------------cccCCCCCCCCCCCeEEEEeC
Confidence 8652100 0000 1111111110 001111123567899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhH-HHHHHHhhcceeeeecccCHHHHHHHHHhc
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIATH 239 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 239 (526)
|||||.||+|+++|+++.+.+......+++++++++++.+|++|..++. ..+.++..|+++++...+++..+++.+ ++
T Consensus 164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~ 242 (505)
T 3nyq_A 164 SGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-ND 242 (505)
T ss_dssp CCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TT
T ss_pred CCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hh
Confidence 9999999999999999999999988889999999999999999999875 466777888888888889999999999 88
Q ss_pred CceeeeccHHHHHHHHccCCCC---CCCCCCceeeEeccCCCCCHHHHHHHh-hcCCeeecccccccCCCCccccccCCC
Q 009756 240 GVTHFCAAPVVLNAIANASPED---TILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPE 315 (526)
Q Consensus 240 ~~t~l~~~P~~~~~l~~~~~~~---~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~ 315 (526)
++|+++++|+++..|.+..... ... ++++|.+++||+++++++.+++. .+++++++.||+||++..++.....
T Consensus 243 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~-l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-- 319 (505)
T 3nyq_A 243 GATMLFGVPTMYHRIAETLPADPELAKA-LAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-- 319 (505)
T ss_dssp TCCEEEECHHHHHHHHHHGGGCHHHHHH-HHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS--
T ss_pred CCeEEEehHHHHHHHHHhhhcCchhhcc-cccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC--
Confidence 9999999999999998753221 122 67899999999999999999998 4599999999999997655432211
Q ss_pred CCCCCcccccccccccceeeeecCCceeecCCCCCccCC-CCCceEEEEEcCccccccccCChhhhhhhhc-CCeeecCc
Q 009756 316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA-DGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGD 393 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD 393 (526)
.....++|.|++++ +++|+|++ |++++. .+++.|||+++|++++.||+++++.+...|. +|||+|||
T Consensus 320 ---------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGD 388 (505)
T 3nyq_A 320 ---------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGD 388 (505)
T ss_dssp ---------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEE
T ss_pred ---------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCC
Confidence 12236899999999 69999987 888876 2237999999999999999999999999995 89999999
Q ss_pred eeEEcCCceEEEeccc-cceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHH
Q 009756 394 LAVKHPDNYIEIKDRL-KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE 472 (526)
Q Consensus 394 ~~~~~~~g~~~~~GR~-~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 472 (526)
+|++++||++++.||. ||+||++|++|+|.+||.+|.++|+|.+++|++.+++..++.++++|+..+..... ..+
T Consensus 389 l~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~----~~~ 464 (505)
T 3nyq_A 389 MAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP----ALG 464 (505)
T ss_dssp EEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCC----CHH
T ss_pred eEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCC----CHH
Confidence 9999999999999998 58999999999999999999999999999999999998899999999987643221 568
Q ss_pred HHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHH
Q 009756 473 DVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 511 (526)
Q Consensus 473 ~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~ 511 (526)
+|+++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus 465 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 465 TLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred HHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 89999999999999999999988 9999999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.8e-69 Score=560.48 Aligned_cols=468 Identities=18% Similarity=0.190 Sum_probs=288.7
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | .+.|+ +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 58 y~eL~~~~~~lA~~-L---~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~ 132 (562)
T 3ite_A 58 YKKLNETANQVANL-I---IHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFV 132 (562)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHH-H---HhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEE
Confidence 78999999999999 9 89999 7999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+++....+. .. ....++... ...+.+.+........ .....++++++|+||
T Consensus 133 ~~~~~~~~~-----~~-------~~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~T 183 (562)
T 3ite_A 133 CDNNFDGVE-----LP-------PETKVLDTK----------------NQSFIENLSTQDTSDI-LNNYPENLDAYLLYT 183 (562)
T ss_dssp CTTTTTTCC-----CC-------TTCEEEETT----------------CHHHHHHHHHSCCSCC-CCCCCTTSEEEEEEE
T ss_pred ccccccccc-----cC-------ccceeeccc----------------chhhhhhccccccccc-ccCCCCCCcEEEEEC
Confidence 875432110 00 111222111 1223333333322221 123457789999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhH--------hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccC-HHH
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALI--------WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT-AKA 231 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~ 231 (526)
|||||.||+|+++|+++.+........ +.+...+++++..|++|..++...+.++..|++++...... +..
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 999999999999999998877665443 34677899999999999888887888888888887765433 467
Q ss_pred HHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccccCCCCcccc
Q 009756 232 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVC 310 (526)
Q Consensus 232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~ 310 (526)
+++.++++++|+++++|++++.+.... .. ++++|.+++||+++++++.+++.+ +++++++.||+||+++.++..
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 338 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGLVP----ED-APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTCCG----GG-STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred HHHHHHHcCCCEEEcCHHHHhhcccCc----cc-cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence 889999999999999999988875443 23 789999999999999999999985 489999999999998766654
Q ss_pred ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCC--e
Q 009756 311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG--W 388 (526)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~ 388 (526)
...+. ....++|.|++++ +++|+|++++++++.| +.|||+++|++++.||+++++.+...+.+| |
T Consensus 339 ~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w 405 (562)
T 3ite_A 339 RILPD----------SDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKM 405 (562)
T ss_dssp ECCTT----------SCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEE
T ss_pred eecCC----------CCCccccccCCCC-eEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEE
Confidence 33221 1236789999999 6999999889999988 899999999999999999999888777777 9
Q ss_pred eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcC-CCeeeeEEEEcCCCCCCceeEEEEEecCCCch---
Q 009756 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH-PLVLEAAVVARPDERWGESPCAFVTLKPEADE--- 464 (526)
Q Consensus 389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 464 (526)
|+|||+|++++||++++.||.||+||++|++|+|.+||++|.++ +.+.+++|++.+++..++..+++++...+...
T Consensus 406 ~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~ 485 (562)
T 3ite_A 406 YRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGE 485 (562)
T ss_dssp EEEEEEEEECTTSCEEEEEEC-----------------------------------------------------------
T ss_pred EecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999998 77889999988888877766666555433221
Q ss_pred -----hhhhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCC-CCccccHHHHHHHHHhcCCcc
Q 009756 465 -----LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKS-ATGKIQKHLLRAKAKEMGPVK 520 (526)
Q Consensus 465 -----~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t-~~GKv~r~~l~~~~~~~~~~~ 520 (526)
++.....++|+++|+++|+.|++|+.+.+++ ||+| ++||++|++|++++.+....+
T Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~~~~ 548 (562)
T 3ite_A 486 LRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLSLGE 548 (562)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccCHHH
Confidence 1112234689999999999999999999988 9998 899999999999998766544
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.1e-68 Score=556.67 Aligned_cols=476 Identities=18% Similarity=0.171 Sum_probs=379.8
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCcc---ChHHHHHHHhhcCceE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL---NATVVAFILSHASSAV 77 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ 77 (526)
|+||.++++++|++ | ++.|+++||+|+++++|++++++++|||+++|++++|+++.+ +.+++.++++.+++++
T Consensus 43 y~eL~~~~~~lA~~-L---~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~ 118 (590)
T 3kxw_A 43 YEQLDQHAKAIAAT-L---QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVI 118 (590)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCE
Confidence 78999999999999 9 999999999999999999999999999999999999999987 4578999999999999
Q ss_pred EEEccchHHHHHHHH-HHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEE
Q 009756 78 VIVDQEFFSLAEEAL-KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 156 (526)
Q Consensus 78 vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~ 156 (526)
++++.+....+.... ...+ ....+..+.... +... ...........++++++
T Consensus 119 vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~d~a~ 171 (590)
T 3kxw_A 119 VLMIADHIKKFTADELNTNP-------KFLKIPAIALES-------------------IELN-RSSSWQPTSIKSNDIAF 171 (590)
T ss_dssp EEECHHHHHHHCC-----CC-------EETTEEEEEGGG-------------------CCGG-GGGGCCCCCCCTTSEEE
T ss_pred EEeCHHHHHHHHHhhhhhcc-------cccccceeechh-------------------cccc-ccccCCCCCCCCCCeEE
Confidence 999987655443322 1111 111111111110 0000 00111112357789999
Q ss_pred EEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHH-HHHHHhhcceeeeeccc----CHHH
Q 009756 157 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQV----TAKA 231 (526)
Q Consensus 157 i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~----~~~~ 231 (526)
|+|||||||.||+|++||+++.+.+......+++++++++++.+|++|..++.. .+.++..|+++++.+.. ++..
T Consensus 172 i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 251 (590)
T 3kxw_A 172 LQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLS 251 (590)
T ss_dssp EEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHH
T ss_pred EEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHH
Confidence 999999999999999999999999999989999999999999999999999876 55566667767666544 7899
Q ss_pred HHHHHHhcCceeeeccHHHHHHHHccCC---CCCCCCCCceeeEeccCCCCCHHHHHHHhh-c------CCeeecccccc
Q 009756 232 VYTAIATHGVTHFCAAPVVLNAIANASP---EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K------GFRITHTYGLT 301 (526)
Q Consensus 232 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~---~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~------~~~i~~~YG~t 301 (526)
+++.++++++|++.++|..+..+.+... ..... ++++|.+++||+++++++.+++.+ + +.++++.||+|
T Consensus 252 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~T 330 (590)
T 3kxw_A 252 WLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLA 330 (590)
T ss_dssp HHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECG
T ss_pred HHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccc
Confidence 9999999999999999999999887632 22334 899999999999999999999874 3 34799999999
Q ss_pred cCCCCccccccCCCCCCC----------------CcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEc
Q 009756 302 ELTGPASVCAWKPEWDSL----------------PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 365 (526)
Q Consensus 302 E~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~ 365 (526)
|++++++.......+... +.........++|.|+++ ++|+|++++.+++.| +.|||+|+
T Consensus 331 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~---v~i~d~~~~~~~~~g--~~GEl~v~ 405 (590)
T 3kxw_A 331 EATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE---VKIIDPDTLIPCDFD--QVGEIWVQ 405 (590)
T ss_dssp GGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE---EEEECTTTCCBCCTT--BCEEEEEE
T ss_pred cccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC---eEEEcCCCCcCCCCC--CEEEEEEe
Confidence 998877654322111000 001112334678999887 788999889999988 89999999
Q ss_pred CccccccccCChhhhhhhhcC-------C--eeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHH-HcCCCe
Q 009756 366 GSCVMKGYLKNPKANEEAFAN-------G--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL-YLHPLV 435 (526)
Q Consensus 366 ~~~~~~gy~~~~~~~~~~~~~-------g--~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l-~~~~~v 435 (526)
|++++.||+++++.+...|.+ | ||+|||+|+++ ||.+++.||.||+||++|++|+|.+||.+| ..+|.|
T Consensus 406 g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v 484 (590)
T 3kxw_A 406 SNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHH 484 (590)
T ss_dssp STTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGG
T ss_pred CCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccc
Confidence 999999999999999999964 5 99999999999 999999999999999999999999999999 788999
Q ss_pred e--eeEEEEcCCCCCCceeEEEEEecCCCc-hhhhhhhHHHHHHHHHhcCCC-ccCCc-EEEec--c-ccCCCCccccHH
Q 009756 436 L--EAAVVARPDERWGESPCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKMPS-YWVPK-SVVFA--A-LPKSATGKIQKH 507 (526)
Q Consensus 436 ~--~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~l~~~l~~~l~~-~~~p~-~~~~~--~-lP~t~~GKv~r~ 507 (526)
. +|+|++.+++. ++.++++++..++.. .. ..+++.++|+++++. +++|. .+.++ + ||+|++||++|+
T Consensus 485 ~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~ 559 (590)
T 3kxw_A 485 VLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDV----AQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRN 559 (590)
T ss_dssp GEEEEEEEEEEETT-EEEEEEEEEESCTTCCHH----HHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHH
T ss_pred cCccEEEEEecCCC-CceEEEEEEeccccccch----hHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHH
Confidence 8 79999988776 778888988876642 21 456777777777764 67775 45544 5 999999999999
Q ss_pred HHHHHHHhcCCc
Q 009756 508 LLRAKAKEMGPV 519 (526)
Q Consensus 508 ~l~~~~~~~~~~ 519 (526)
+|++++.+....
T Consensus 560 ~L~~~~~~~~~~ 571 (590)
T 3kxw_A 560 FCRKHLLDKTLP 571 (590)
T ss_dssp HHHHHHHHTCSC
T ss_pred HHHHHHHcCCCc
Confidence 999999977653
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1e-67 Score=550.35 Aligned_cols=473 Identities=19% Similarity=0.220 Sum_probs=379.0
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccC-------hHHHHHHHhhc
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN-------ATVVAFILSHA 73 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~ 73 (526)
|+||.++++++|++ | +++|+++||+|+++++|++++++++|||+++|++++|+++.++ .+++.++++.+
T Consensus 52 y~eL~~~~~~lA~~-L---~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~ 127 (576)
T 3gqw_A 52 YQTLKARAEAGAKR-L---LSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASC 127 (576)
T ss_dssp HHHHHHHHHHHHHH-H---HHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-H---HHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhc
Confidence 78999999999999 9 9999999999999999999999999999999999999999998 78999999999
Q ss_pred CceEEEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCC
Q 009756 74 SSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ 153 (526)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 153 (526)
+++++|++++....+.......+ ...+ +.. .+. ..............+++
T Consensus 128 ~~~~ii~~~~~~~~~~~~~~~~~--------~~~~--~~~-----------------~~~---~~~~~~~~~~~~~~~~d 177 (576)
T 3gqw_A 128 QPAAIITGDEWLPLVNAATHDNP--------ELHV--LSH-----------------AWF---KALPEADVALQRPVPND 177 (576)
T ss_dssp CCSEEEECGGGHHHHHHHGGGCT--------TCEE--EEH-----------------HHH---HTSCCCCCCCCCCCTTS
T ss_pred CCCEEEecHHHHHHHHHhhccCC--------ccee--cch-----------------hhh---hcccccccccCCCCCCC
Confidence 99999999987776655433222 1111 110 011 11111111122356789
Q ss_pred eEEEEecCCCCCCccceeecchhHHHHHHhhHhH-hCCcCCcEEEEecccccchhhHHHHHHH-hhcceeeeecc----c
Q 009756 154 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-WGMNEGAVFLWTLPMFHGNGWSYTWSLA-ALCGTSICLRQ----V 227 (526)
Q Consensus 154 ~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~g~~~~~~~~----~ 227 (526)
+++|+|||||||.||+|+++|+++.+.+...... +++.+++++++.+|++|..++...+... ..|+++++... +
T Consensus 178 ~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 257 (576)
T 3gqw_A 178 IAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAM 257 (576)
T ss_dssp EEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHH
T ss_pred eEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhh
Confidence 9999999999999999999999999888776654 7899999999999999999987655544 44555544432 5
Q ss_pred CHHHHHHHHHhcCceeeeccHHHHHHHHccCCC---CCCCCCCceeeEeccCCCCCHHHHHHHhh-c------CCeeecc
Q 009756 228 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE---DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K------GFRITHT 297 (526)
Q Consensus 228 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~------~~~i~~~ 297 (526)
++..+++.++++++|+++++|+++..+.+.... .... ++++|.+++||+++++++.+++.+ + ++++++.
T Consensus 258 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (576)
T 3gqw_A 258 RPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELD-LSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPC 336 (576)
T ss_dssp CTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCC-CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEE
T ss_pred CHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCC-hhhhHhhhccCccCCHHHHHHHHHHHhhcCCCccccccc
Confidence 788999999999999999999999888765432 2233 789999999999999999999874 3 6789999
Q ss_pred cccccCCCCccccccCCCCCCCC-----------------cccccccccccceeeeecCCceeecCCCCCccCCCCCceE
Q 009756 298 YGLTELTGPASVCAWKPEWDSLP-----------------FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIG 360 (526)
Q Consensus 298 YG~tE~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~G 360 (526)
||+||++++++.+.......... .........++|.|++++ +++|+|++ |++++.| +.|
T Consensus 337 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~G 412 (576)
T 3gqw_A 337 YGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEH-GIEIRNEA-GMPVAER--VVG 412 (576)
T ss_dssp EECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTC-EEEEECTT-SCBCCTT--BCE
T ss_pred CCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCC-eEEEECCC-CCCCCCC--CeE
Confidence 99999988776543222110000 000011123789999999 69999966 9999998 899
Q ss_pred EEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEE
Q 009756 361 EIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 440 (526)
Q Consensus 361 el~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 440 (526)
||+++|++++.||+++++.+...+.+|||+|||+|++ +||.++++||.||+||++|++|+|.+||.+|.+||+|.+++|
T Consensus 413 El~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~v 491 (576)
T 3gqw_A 413 HICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDA 491 (576)
T ss_dssp EEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSE
T ss_pred EEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccE
Confidence 9999999999999999999988888999999999999 699999999999999999999999999999999999999888
Q ss_pred EEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcC-CCccCCcEEEecc---ccCCCCccccHHHHHHHHHhc
Q 009756 441 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM-PSYWVPKSVVFAA---LPKSATGKIQKHLLRAKAKEM 516 (526)
Q Consensus 441 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~~~~~~---lP~t~~GKv~r~~l~~~~~~~ 516 (526)
++..... +.+.+++........ ..+++.+.+++++ +.+++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 492 v~~~~~~--~~~~~~~~~~~~~~~-----~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 564 (576)
T 3gqw_A 492 IAFVTAQ--EKIILQIQCRISDEE-----RRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKA 564 (576)
T ss_dssp EEEECTT--SCEEEEEECCCCCHH-----HHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHH
T ss_pred EEEEcCC--ccEEEEEEEecCchh-----HHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHH
Confidence 8776653 345555555444332 4567788888877 6789999887653 999999999999999999876
Q ss_pred CCcc
Q 009756 517 GPVK 520 (526)
Q Consensus 517 ~~~~ 520 (526)
....
T Consensus 565 ~~~~ 568 (576)
T 3gqw_A 565 YAAS 568 (576)
T ss_dssp HTCC
T ss_pred hhhc
Confidence 5543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.5e-67 Score=588.69 Aligned_cols=455 Identities=21% Similarity=0.261 Sum_probs=383.8
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 80 (526)
|+||.++++++|++ | ++.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+
T Consensus 492 Y~eL~~~a~~lA~~-L---~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~ 567 (1304)
T 2vsq_A 492 YRELDEEANRIARR-L---QKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLT 567 (1304)
T ss_dssp HHHHHHHHHHHHHH-H---HHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHH-H---HhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEE
Confidence 78999999999999 9 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEEEec
Q 009756 81 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 160 (526)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~T 160 (526)
+.+....+. .++ .....+.+++.. . .... .........++++|||+||
T Consensus 568 ~~~~~~~~~----~~~-------~~~~~~~~~~~~---------------~----~~~~--~~~~~~~~~~~~~ayiiyT 615 (1304)
T 2vsq_A 568 HQEMKEQAA----ELP-------YTGTTLFIDDQT---------------R----FEEQ--ASDPATAIDPNDPAYIMYT 615 (1304)
T ss_dssp CSTTCTTST----TCC-------CCSEEEESSCGG---------------G----GGSC--SSCCCCCCCTTSEEEEEEE
T ss_pred Ccchhhhhh----ccC-------CCCcEEEecccc---------------c----cccc--cCCCCCCCCCCCeEEEEeC
Confidence 876433211 011 112233332210 0 0001 1111123568899999999
Q ss_pred CCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc---cCHHHHHHHHH
Q 009756 161 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIA 237 (526)
Q Consensus 161 SGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~ 237 (526)
|||||.||||+++|+++.+. ......++++++++++...|++|..+....+.++..|+++++.+. .++..+++.++
T Consensus 616 SGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~ 694 (1304)
T 2vsq_A 616 SGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLIL 694 (1304)
T ss_dssp CCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHH
T ss_pred CCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHH
Confidence 99999999999999998865 444556788899999999999999888888888889998888753 68999999999
Q ss_pred hcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhh-c-CCeeecccccccCCCCccccccCCC
Q 009756 238 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPE 315 (526)
Q Consensus 238 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~ 315 (526)
++++|+++++|+++..|..... .. ++++|.+++|||++++++.+++.+ + +++++|.||+||++.+++.+.....
T Consensus 695 ~~~vt~~~~~p~~~~~l~~~~~---~~-~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~ 770 (1304)
T 2vsq_A 695 QENVNVMFATTALFNLLTDAGE---DW-MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL 770 (1304)
T ss_dssp HHTCCEEEEEHHHHHHHHHHCS---HH-HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC
T ss_pred HcCCcEEEccHHHHHHHHhhch---hc-CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc
Confidence 9999999999999999987532 12 678999999999999999999874 3 5789999999999877765432210
Q ss_pred CCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhc-------CCe
Q 009756 316 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-------NGW 388 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~ 388 (526)
.......++|.|++++ +++|+|++ ++++|.| +.|||+|+|+++++||+++++.+..+|. ++|
T Consensus 771 -------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~ 839 (1304)
T 2vsq_A 771 -------PDSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETL 839 (1304)
T ss_dssp -------CSSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEE
T ss_pred -------cccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCee
Confidence 0111236799999999 69999987 9999998 8999999999999999999999999994 349
Q ss_pred eecCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhh
Q 009756 389 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG 468 (526)
Q Consensus 389 ~~tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 468 (526)
|+|||+|++++||.++++||.||+||++|.+|+|.+||.+|.++|+|.+++|++.++...++.++++++.....
T Consensus 840 yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~------ 913 (1304)
T 2vsq_A 840 YRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------ 913 (1304)
T ss_dssp EEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS------
T ss_pred EecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC------
Confidence 99999999999999999999999999999999999999999999999999999998888888999999976533
Q ss_pred hhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHH
Q 009756 469 KLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 514 (526)
Q Consensus 469 ~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~ 514 (526)
..++++++++++||.|++|+.+++++ ||+|++||++|++|++...
T Consensus 914 -~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 914 -SAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp -CHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred -CHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 35789999999999999999999888 9999999999999976543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.3e-54 Score=436.89 Aligned_cols=369 Identities=19% Similarity=0.186 Sum_probs=286.2
Q ss_pred CccchhhhhhcccccccCccCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccC---ccChHHHHHHHhhcCceE
Q 009756 1 MDQSTTRGIRLTGVAVDSPLLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINI---RLNATVVAFILSHASSAV 77 (526)
Q Consensus 1 y~el~~~~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ 77 (526)
|+||.++++++|++ | ++.|+ +||+|+|+++|++++++++|||+++|++++|+++ .++.+++.++++.+++++
T Consensus 61 y~el~~~~~~lA~~-L---~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~ 135 (480)
T 3t5a_A 61 WSQLYRRTLNVAQE-L---SRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVA 135 (480)
T ss_dssp HHHHHHHHHHHHHH-H---TTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHH-H---HhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence 78999999999999 9 99996 9999999999999999999999999999999999 788999999999999999
Q ss_pred EEEccchHHHHHHHHHHhhhccCCCCCCCeEEEEccCCCCchhhhhhhhcCcccHHHHHhhCCCCcCCCCCCCCCCeEEE
Q 009756 78 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL 157 (526)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i 157 (526)
+|++++....+.+........ ....++.++.... ............++++++|
T Consensus 136 vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~d~a~i 188 (480)
T 3t5a_A 136 ILTTSSAVDDVVQHVARRPGE-----SPPSIIEVDLLDL----------------------DAPNGYTFKEDEYPSTAYL 188 (480)
T ss_dssp EEECTTTHHHHHHTCC-----------CCEEEEGGGSCT----------------------TCC---CCCCSSCCSEEEE
T ss_pred EEeChhHHHHHHHHHhccccc-----cccceeEeccccc----------------------ccccCCCCCCCCCCceEEE
Confidence 999998776655432222100 1123333322110 0111111223567899999
Q ss_pred EecCCCCCCccceeecchhHHHHHHhhHhHhCCcC------CcEEEEecccccchhhHH-HHHHHhhcceeeeecc----
Q 009756 158 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE------GAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ---- 226 (526)
Q Consensus 158 ~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~---- 226 (526)
+|||||||.||+|++||+++.+.+......+.+.. ++++++.+|++|..++.. .+.++..|+++++.+.
T Consensus 189 ~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 268 (480)
T 3t5a_A 189 QYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFL 268 (480)
T ss_dssp ECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHH
T ss_pred EecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHH
Confidence 99999999999999999999999888888888777 999999999999999765 4566667777777654
Q ss_pred cCHHHHHHHHHhcCceeeeccHHHHHHHHccC----CCCCCCCCCceeeEeccCCCCCHHHHHHHh-hc------CCeee
Q 009756 227 VTAKAVYTAIATHGVTHFCAAPVVLNAIANAS----PEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QK------GFRIT 295 (526)
Q Consensus 227 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~----~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~-~~------~~~i~ 295 (526)
.++..+++.++++++| +.++|+++..++... ...... ++++|.+++||+++++++.+++. .+ +++++
T Consensus 269 ~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~ 346 (480)
T 3t5a_A 269 QRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIR 346 (480)
T ss_dssp HCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEE
T ss_pred HCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcc
Confidence 3899999999999999 888998888877642 222334 89999999999999999999998 43 24799
Q ss_pred cccccccCCCCccccccCCCCCCCCc--------------ccccccccccceeeeecCCceeecCCCCCccCCCCCceEE
Q 009756 296 HTYGLTELTGPASVCAWKPEWDSLPF--------------ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 361 (526)
Q Consensus 296 ~~YG~tE~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Ge 361 (526)
+.||+||++++++............. ........++|.|++ + +++|+|+++|++++.| +.||
T Consensus 347 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GE 422 (480)
T 3t5a_A 347 PSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGE 422 (480)
T ss_dssp EEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEE
T ss_pred ccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEE
Confidence 99999999877665433211100000 000233468999999 7 6999999888999998 8999
Q ss_pred EEEcCccccccccCChhhhhhhh------------cCCeeecCceeEEcCCceEEEecc
Q 009756 362 IVMRGSCVMKGYLKNPKANEEAF------------ANGWFHSGDLAVKHPDNYIEIKDR 408 (526)
Q Consensus 362 l~v~~~~~~~gy~~~~~~~~~~~------------~~g~~~tGD~~~~~~~g~~~~~GR 408 (526)
|+|+|++++.||+++++.+.+.| .+|||+|||+|+++ ||+++++||
T Consensus 423 l~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 423 IWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred EEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999999999999 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=4.4e-53 Score=410.42 Aligned_cols=316 Identities=19% Similarity=0.192 Sum_probs=264.6
Q ss_pred CCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecccCHH
Q 009756 151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAK 230 (526)
Q Consensus 151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 230 (526)
.+++++|+|||||||.||+|++||+++.+.+......++++++|++++.+|++|.+++...+.++..|+++++.... .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 46899999999999999999999999999999999999999999999999999999999888888999988887532 2
Q ss_pred HHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCHHHHHHHhhcCCeeecccccccCCCCcccc
Q 009756 231 AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVC 310 (526)
Q Consensus 231 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 310 (526)
..++.++++++|++.++|+++..|++..... .. ++++|.+++||+++++++.+++.++++++++.||+||+++.++..
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~ 191 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATS-GQ-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALK 191 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GG-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhcccccc-cc-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecc
Confidence 2467789999999999999999999876433 33 899999999999999999999998899999999999998766553
Q ss_pred ccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeee
Q 009756 311 AWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 390 (526)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~ 390 (526)
.... ...+.+|.+.|++ .+.+ + +.||++++|+.. .+|||+
T Consensus 192 ~~~~-----------~~~g~~~~~~pgv-~~~~-----------~--~~Gel~~~g~~~---------------~~g~~~ 231 (358)
T 4gs5_A 192 ALNG-----------PEASELYVFLPGI-QYGV-----------D--ERGCLHISGAVT---------------NGQTVQ 231 (358)
T ss_dssp ECSS-----------TTCCSCEEECTTC-EEEE-----------C--TTSEEEEESGGG---------------TTCCEE
T ss_pred cccc-----------cccceeeccCCCe-EEEe-----------c--CcCceEEecccc---------------cCccee
Confidence 3221 1125667777766 2433 1 358999987632 368999
Q ss_pred cCceeEEcCCceEEEeccccceeeeCCeeechHHHHHHH---HcCCCeeeeEEE-EcCCCCCCceeEEEEEecCCCchhh
Q 009756 391 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL---YLHPLVLEAAVV-ARPDERWGESPCAFVTLKPEADELD 466 (526)
Q Consensus 391 tGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~ 466 (526)
|||+|++++|| ++++||.||+||++|++|+|.+||++| .+||.|.+++|+ +.+++..|+.++++|+..... .
T Consensus 232 TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-~-- 307 (358)
T 4gs5_A 232 TNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-A-- 307 (358)
T ss_dssp EEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-H--
T ss_pred cCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-c--
Confidence 99999999988 667799999999999999999999877 467999998876 667777788898888765432 2
Q ss_pred hhhhHHHHHHHHHhcCCCccCCcEEEecc-ccCCCCccccHHHHHHHHHhcC
Q 009756 467 KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 517 (526)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~p~~~~~~~-lP~t~~GKv~r~~l~~~~~~~~ 517 (526)
..++|+++|+++|+.|++|+.+++++ ||+|++|||+|++|++++.+..
T Consensus 308 ---~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 308 ---LTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp ---HHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred ---CHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 55789999999999999999999988 9999999999999999987754
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.9e-48 Score=389.78 Aligned_cols=347 Identities=16% Similarity=0.174 Sum_probs=272.1
Q ss_pred ccHHHHHhhCCCCcCCCCCCCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhH---hHhCCcCCcEEEEeccc-ccc
Q 009756 130 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHG 205 (526)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~ 205 (526)
.+.+++.+..+.. .....++++++++|||||||.||+|+++|+++........ ..+++.+++++++..|+ +|.
T Consensus 73 ~~~~~l~~~~p~~---~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 149 (443)
T 2y4o_A 73 STKNDLRDNYPFG---LFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFT 149 (443)
T ss_dssp BCHHHHHTTTTTT---TCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred CcHHHHHhhCCCc---ccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccc
Confidence 4555555443211 1224678999999999999999999999999877655443 35688999999999998 567
Q ss_pred hhhHHHHHHHhhcceeeeecccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHH
Q 009756 206 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLL 284 (526)
Q Consensus 206 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~ 284 (526)
.++...+.++..|++++..+..++..+++.++++++|+++++|+++..|++........ .++++|.+++|||++++++.
T Consensus 150 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~ 229 (443)
T 2y4o_A 150 GGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALR 229 (443)
T ss_dssp HHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHH
T ss_pred cHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHH
Confidence 77777777788888888877789999999999999999999999999998764322222 15789999999999999999
Q ss_pred HHHh-hcCCeeecccccccCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEE
Q 009756 285 FAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV 363 (526)
Q Consensus 285 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~ 363 (526)
+++. .+|+++++.||+||+++.++....... ....+.+.+++ .++|+|+++|++++.| +.|||+
T Consensus 230 ~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~ 294 (443)
T 2y4o_A 230 NEVETRVGIDALDIYGLSEVMGPGVACECVET------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELV 294 (443)
T ss_dssp HHHHHHHTCEEEEEEEETTTTEEEEEEECTTT------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEE
T ss_pred HHHHHHhCcCEEeccCchhhcCCeEEeccCCC------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEE
Confidence 9998 459999999999998543222111100 01133344566 6999998889999988 799999
Q ss_pred EcCccccccccCChhhhhhhhcCCeeecCceeEEcCC-ceE-----EEeccccceeeeCCeeechHHHHHHHHcCCCeee
Q 009756 364 MRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 437 (526)
Q Consensus 364 v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~ 437 (526)
++|. +...|.++||+|||+|+++++ |++ ++.||.||+||++|++|+|.+||.+|.++|+|.+
T Consensus 295 v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~ 362 (443)
T 2y4o_A 295 FTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSG 362 (443)
T ss_dssp EEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEE
T ss_pred EeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCc
Confidence 9973 223456789999999999999 986 8999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCceeEEEEEecC--CCchhhhhhhHHHHHHHHHhcCCCc-cCCcEEEec--c-ccCCCCccccHHH
Q 009756 438 AAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA--A-LPKSATGKIQKHL 508 (526)
Q Consensus 438 ~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~-lP~t~~GKv~r~~ 508 (526)
++|++.+++..++.++++|++.+ +... .....++++++|+++|+.+ .+|..+.++ + ||+|++||++|..
T Consensus 363 ~~vv~~~~~~~~~~~~a~v~~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 363 QFQITLSRDGHMDRLDLAVELRSEAAASV--TDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEEEEEEETTEEEEEEEEEECHHHHTTC--CHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred cEEEEEecCCCCceEEEEEEECCcccccc--hhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 99888877766788999999875 2110 0114567888888888876 488877766 4 9999999999864
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.2e-48 Score=387.76 Aligned_cols=328 Identities=20% Similarity=0.224 Sum_probs=259.5
Q ss_pred CCC-CCeEEEEecCCCCCCccceeecchhHHHHHHhhH---hHhCCcCCcEEEEecccccchhh-HHHHHHHhhcceeee
Q 009756 149 EDE-WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALCGTSIC 223 (526)
Q Consensus 149 ~~~-~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~g~~~~~ 223 (526)
..+ +++++++|||||||.||+|+++|.++.+...... ..+++.+++++++..|+.|..+. ...+.++..|++++.
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 455 8899999999999999999999999877766553 34588999999999998665554 455666777888877
Q ss_pred ecccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHHHHHhh-cCCeeecccccc
Q 009756 224 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLT 301 (526)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~~~~~~-~~~~i~~~YG~t 301 (526)
.+..++..+++.++++++|+++++|+++..|++........ .++++|.+++|||++++++.+++.+ +|+++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 77889999999999999999999999999998774332221 1689999999999999999999985 499999999999
Q ss_pred cCCCCccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhhh
Q 009756 302 ELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 381 (526)
Q Consensus 302 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 381 (526)
|+++.++..... .....+.+.+++ .++|+|+++|++++.| +.|||+++|. +.
T Consensus 242 E~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 996543332211 002244555577 6999998789999988 7999999984 22
Q ss_pred hhhcCCeeecCceeEEcCCc------e---EEEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCcee
Q 009756 382 EAFANGWFHSGDLAVKHPDN------Y---IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 452 (526)
Q Consensus 382 ~~~~~g~~~tGD~~~~~~~g------~---~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 452 (526)
..|.++||+|||+|+++++| . +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus 294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 34567899999999999998 4 69999999999999999999999999999999999999999888878899
Q ss_pred EEEEEecCCCchhhhhhhHHHHHHHHHhcCCCc-cCCcEEEecc---ccCCCCccccHH
Q 009756 453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAA---LPKSATGKIQKH 507 (526)
Q Consensus 453 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~~---lP~t~~GKv~r~ 507 (526)
+++|++. +...+ .....+++.+.++++|+.+ ++|..+.+++ ||+|+ ||++|.
T Consensus 374 ~a~v~~~-~~~~~-~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 374 IVEVELS-DLSTD-NYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEC-TTCCC-CHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEc-Ccccc-chhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 9999998 44321 1113567777777777777 7888887764 99999 999885
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.4e-48 Score=387.71 Aligned_cols=328 Identities=17% Similarity=0.155 Sum_probs=267.6
Q ss_pred CCCCCeEEEEecCCCCCCccceeecchhHHHHHHhhH---hHhCCcCCcEEEEeccc-ccchhhHHHHHHHhhcceeeee
Q 009756 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 224 (526)
Q Consensus 149 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 224 (526)
..++++++++|||||||.||+|+++|.++........ ..+++++++++++..|+ +|..++...+.++..|++++..
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4678999999999999999999999999877665433 35678999999999998 6777777777778888888877
Q ss_pred cccCHHHHHHHHHhcCceeeeccHHHHHHHHccCCCCCCC-CCCceeeEeccCCCCCHHHHHHHh-hcCCeeeccccccc
Q 009756 225 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTE 302 (526)
Q Consensus 225 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~lr~~~~~Ge~l~~~~~~~~~-~~~~~i~~~YG~tE 302 (526)
+..++..+++.++++++|+++++|+++..|++........ .++++|.+++||+++++++.+.+. .+|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 7789999999999999999999999999998764322222 147899999999999999999997 56999999999999
Q ss_pred CCCC--ccccccCCCCCCCCcccccccccccceeeeecCCceeecCCCCCccCCCCCceEEEEEcCccccccccCChhhh
Q 009756 303 LTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 380 (526)
Q Consensus 303 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~v~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 380 (526)
+++. +..+... ....+.+.+++ .++|+|+++|++++.| +.|||+++|. +
T Consensus 247 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 247 VMGPGVASECVET--------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTEEEEEECCTTT--------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeeEEecCCC--------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 8543 2222110 01244455666 6999998889999988 7999999873 2
Q ss_pred hhhhcCCeeecCceeEEcC-CceE-----EEeccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEE
Q 009756 381 EEAFANGWFHSGDLAVKHP-DNYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 454 (526)
Q Consensus 381 ~~~~~~g~~~tGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 454 (526)
...|.++||+|||+|++++ +|++ ++.||.||+|+++|++|+|.+||++|.++|+|.+++|++.+++..++.+++
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 2345678999999999998 6985 899999999999999999999999999999999999888877766788999
Q ss_pred EEEecCCCchhhhhhhHHHHHHHHHhcCCCc-cCCcEEEec--c-ccCCCCccccHHH
Q 009756 455 FVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA--A-LPKSATGKIQKHL 508 (526)
Q Consensus 455 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~-lP~t~~GKv~r~~ 508 (526)
+|++.++...+ ....++++++|+++|+.+ .+|..+.++ + ||+|+ ||++|..
T Consensus 378 ~v~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAPD--TAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTTC--HHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccch--hhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 99987664311 114577888888888887 588888776 4 99999 9999863
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1.1e-30 Score=255.48 Aligned_cols=236 Identities=16% Similarity=0.113 Sum_probs=177.8
Q ss_pred CCCCCeEEEEecCCCCCCccceeecchhHHHHHHhh---HhHhCCcCCcEEEEeccc-ccchhhHHHHHHHhhcceeeee
Q 009756 149 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG---ALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 224 (526)
Q Consensus 149 ~~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 224 (526)
..++++++++|||||||.||+|.++|+++....... ...+++.+++++++..|+ +|..++...+.+...|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467889999999999999999999999998887743 345578899999999999 99999888777777777 6665
Q ss_pred cccCHH-----------------------HHHHHHHhcCceeeeccHHHHHHHHccCCCCCCCCCCceeeEeccCCCCCH
Q 009756 225 RQVTAK-----------------------AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 281 (526)
Q Consensus 225 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~Ge~l~~ 281 (526)
..+++. .+++.++++++|+++++|+++..|++........ ++++|.+++|||++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence 566766 7888999999999999999999998874322233 6899999999999999
Q ss_pred HHHHHHh-hc--CCeeecccccccCCCCccccccCCCCCCCCccccccccccccee------eeecCCceeecCCCCCcc
Q 009756 282 SLLFAMS-QK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVR------TICLDGLDVIDARTNQPV 352 (526)
Q Consensus 282 ~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~~v~d~~~g~~~ 352 (526)
++++++. +. ++++++.||+||+++++..+.. .++|.+ .+++ +++|+|+++|+++
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v 308 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTV 308 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence 9999998 55 8999999999999865543210 146777 7888 6999999779999
Q ss_pred CCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC--c-------eEEEeccccceeeeCCe
Q 009756 353 PADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD--N-------YIEIKDRLKDVIISGGE 418 (526)
Q Consensus 353 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~--g-------~~~~~GR~~d~i~~~G~ 418 (526)
+.| +.|||+|++.... .+ --+|+|||++...+. | .+..++|.++..++.|.
T Consensus 309 p~G--~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 309 EYG--ERGNVIVTHLSPW------------AF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CTT--CEEEEEEEEEETT------------EE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCC--CceEEEEEEcCcc------------cc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 998 8999999874321 11 124899999988653 2 35677888888887774
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.53 E-value=1.3e-14 Score=113.93 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=72.1
Q ss_pred ccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCch--hhhhhhHHHHHHHHHhcCCC
Q 009756 407 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE--LDKGKLAEDVSKFCRAKMPS 484 (526)
Q Consensus 407 GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~ 484 (526)
.|.||+|+++|.+++|.+||++|.++|+|.++++++.+++.+++.+.++++..++... .+..+..+++++.+.+.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~-- 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI-- 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh--
Confidence 4899999999999999999999999999999999999999889999999998876542 222234445555555544
Q ss_pred ccCCcEEEecc---ccCCCCccccH
Q 009756 485 YWVPKSVVFAA---LPKSATGKIQK 506 (526)
Q Consensus 485 ~~~p~~~~~~~---lP~t~~GKv~r 506 (526)
.++..+.+++ ||+| +||++|
T Consensus 79 -gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 -LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp -SSCCEEEEECTTCSCCC----CCC
T ss_pred -CCccceEEEcCCeecCC-CCCcch
Confidence 2444555553 9998 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.49 E-value=7.9e-14 Score=109.09 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=71.5
Q ss_pred ccccceeeeCCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCc---hhhhhhhHHHHHHHHHhcCC
Q 009756 407 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD---ELDKGKLAEDVSKFCRAKMP 483 (526)
Q Consensus 407 GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~l~~~l~~~l~ 483 (526)
||.||+|+++|.+++|.+||++|.++|+|.++++++.+++.+++.+.+++++ ++.. ..+..+..+++++.+.+.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777778899999998 5532 12233355666666665543
Q ss_pred CccCCcEEEecc---ccCCCCccccHH
Q 009756 484 SYWVPKSVVFAA---LPKSATGKIQKH 507 (526)
Q Consensus 484 ~~~~p~~~~~~~---lP~t~~GKv~r~ 507 (526)
++..+.+++ ||+| +||++|.
T Consensus 80 ---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 ---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp ---SCCEEEEECTTCSCCC----CCCE
T ss_pred ---CceEEEEECCCCccCC-CCceEEE
Confidence 333566553 9999 9999873
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.88 E-value=3.4e-08 Score=98.98 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=59.7
Q ss_pred ceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC----CceEEEeccccceeeeCCeeechHHHHHHHHcCC
Q 009756 358 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 433 (526)
Q Consensus 358 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~ 433 (526)
+.+||+++..+ |.|+ |++||+.++.. ..++.+.||.++++.+.|++++..+||+++.+..
T Consensus 385 ~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 385 CTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp CEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred ceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 78999998763 5555 99999999875 4689999999999999999999999999998543
Q ss_pred --------CeeeeEEEEcCCCCCCceeEEEEEec
Q 009756 434 --------LVLEAAVVARPDERWGESPCAFVTLK 459 (526)
Q Consensus 434 --------~v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (526)
.|.+..+..... ....+.+.|.++.
T Consensus 449 ~~l~~~g~~l~eft~~~~~~-~~p~Hy~~~wel~ 481 (581)
T 4eql_A 449 LVLESSGLDLKDFTSYADTS-TFPGHYVVYLEVD 481 (581)
T ss_dssp -------------CEEEECS-SSSBEEEEECC--
T ss_pred HhhhhcCCEEEEEEEecCCC-CCCCeEEEEEEEe
Confidence 245555543322 2233555566554
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.87 E-value=5.4e-08 Score=97.68 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=66.7
Q ss_pred ccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcC----CceEEEeccccceeeeCCeeechHHHH
Q 009756 351 PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVE 426 (526)
Q Consensus 351 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~~ie 426 (526)
.+..| +.+||+++.. .|+|+ |++||++++.. ..++.+.||.++++.+.|+++++.+||
T Consensus 392 eVe~G--~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~ 453 (609)
T 4b2g_A 392 HVEVG--KEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQ 453 (609)
T ss_dssp GCCTT--CEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred HcCCC--CeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHH
Confidence 34455 7899999765 36665 99999999873 478999999999999999999999999
Q ss_pred HHHHc------CCC--eeeeEEEEcCCCCCCceeEEEEEec
Q 009756 427 KVLYL------HPL--VLEAAVVARPDERWGESPCAFVTLK 459 (526)
Q Consensus 427 ~~l~~------~~~--v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (526)
+++.+ ..+ |.+..+...... ...+.+.|.++.
T Consensus 454 ~av~~a~~~l~~~g~~l~eft~~~d~~~-~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 454 KAVDNASKLLREVNTSVVEYTSFADTKT-IPGHYVIYWELL 493 (609)
T ss_dssp HHHHHHHHGGGGTTEEEEEEEEEEECSS-SSCEEEEEEEEE
T ss_pred HHHHHHHHhhhccCCeEEEEEEecCCCC-CCCcEEEEEEEe
Confidence 99873 223 567766543322 233566666664
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.72 E-value=3.6e-07 Score=91.34 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=68.3
Q ss_pred ccCCCCCceEEEEEcCccccccccCChhhhhhhhcCCeeecCceeEEcCC----ceEEEeccccceeeeCCeeechHHHH
Q 009756 351 PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD----NYIEIKDRLKDVIISGGENISSVEVE 426 (526)
Q Consensus 351 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~----g~~~~~GR~~d~i~~~G~~v~~~~ie 426 (526)
.+..| +.+||+++..+ |.|+ |++||+.++..- .++.+.||.++++.+.|+++++.+||
T Consensus 387 eve~G--~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~ 448 (581)
T 4epl_A 387 QVKIG--EEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQ 448 (581)
T ss_dssp GCCTT--CEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred HcCCC--CeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHH
Confidence 34445 78999998763 5555 999999998742 57999999999999999999999999
Q ss_pred HHHHcC--------CCeeeeEEEEcCCCCCCceeEEEEEecCC
Q 009756 427 KVLYLH--------PLVLEAAVVARPDERWGESPCAFVTLKPE 461 (526)
Q Consensus 427 ~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (526)
.++.+. -.|.+..+...... ...+.+.|.+....
T Consensus 449 ~al~~a~~~l~~~~~~l~eft~~~d~~~-~p~hyv~~wE~~~~ 490 (581)
T 4epl_A 449 LSVESAAKRLSEEKIEVIDFSSYIDVST-DPGHYAIFWEISGE 490 (581)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEEEECSS-SSCEEEEEEEESSC
T ss_pred HHHHHHHHhhcccCCeEEEEEEecCCCC-CCCcEEEEEeecCC
Confidence 998741 24777777663322 23456666676543
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=85.59 E-value=2.5 Score=41.10 Aligned_cols=81 Identities=10% Similarity=0.035 Sum_probs=61.8
Q ss_pred hhhcccccccCccCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchH
Q 009756 8 GIRLTGVAVDSPLLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF 85 (526)
Q Consensus 8 ~~~~A~~~L~~~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 85 (526)
+..++.. + ...|+.++|++...+|-+ ...+..+++++..|+..++.+. .+.+.+...+++.++.+++..+...
T Consensus 115 ~~~~~~~-~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~ 189 (436)
T 3qov_A 115 ANLVARC-L---YMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALHAIPSYA 189 (436)
T ss_dssp HHHHHHH-H---HHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHHHHH-H---HHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEEECHHHH
Confidence 3344444 4 556899999999998754 3345567888999999998765 4778899999999999999999887
Q ss_pred HHHHHHHH
Q 009756 86 SLAEEALK 93 (526)
Q Consensus 86 ~~~~~~~~ 93 (526)
..+.+...
T Consensus 190 ~~l~~~~~ 197 (436)
T 3qov_A 190 IRLAEVFQ 197 (436)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665544
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=84.69 E-value=1.7 Score=42.24 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=57.4
Q ss_pred cCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHHH
Q 009756 20 LLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92 (526)
Q Consensus 20 ~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 92 (526)
...|+.++|++...+|.. ...+...++++..|+.+++++. .+.+.+...+++.++.+++..+.....+.+..
T Consensus 127 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 127 RAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEI 200 (437)
T ss_dssp HHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHH
Confidence 457889999999999863 3334557888999999998765 47889999999999999999998776665543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=83.19 E-value=2 Score=41.83 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=57.0
Q ss_pred cCCCCCCCCEEEEEcCCc--hhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHH
Q 009756 20 LLFPSSPSDLVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 91 (526)
Q Consensus 20 ~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 91 (526)
...|+.++|++...+|-+ ...+...++++..|+.+++++. .+.+.+...+++.++.+++..+.....+.+.
T Consensus 129 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 129 RAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDE 201 (443)
T ss_dssp HHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence 457889999999998864 3335567888999999998765 4788899999999999999998877666544
No 45
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=74.75 E-value=19 Score=35.54 Aligned_cols=94 Identities=11% Similarity=-0.029 Sum_probs=66.8
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-c
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~ 225 (526)
.++.+|++. .+..+|.+.+...+...... .++++++++...++-+.. .....++++..|+..+.+ +
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCC
Confidence 456777764 13568888887776665544 478899999988875433 234555566667766666 4
Q ss_pred ccCHHHHHHHHHhcCceeeeccHHHHHH
Q 009756 226 QVTAKAVYTAIATHGVTHFCAAPVVLNA 253 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~ 253 (526)
....+.+...+++.++..+++.+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 5678899999999999999998776554
No 46
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=73.00 E-value=12 Score=37.56 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=61.3
Q ss_pred eeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHHhcCceeee
Q 009756 170 VVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 245 (526)
Q Consensus 170 v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~ 245 (526)
..+|.+.+...+...... .+++++|++...++-+.. .....++++..|+..+.+ +....+++...++..++..++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 468888877666655543 488999999988875433 234555666667766666 457788999999999999999
Q ss_pred ccHHHHHHHH
Q 009756 246 AAPVVLNAIA 255 (526)
Q Consensus 246 ~~P~~~~~l~ 255 (526)
+....+..+.
T Consensus 128 ~~~~~~~~~~ 137 (550)
T 3rix_A 128 VSKKGLQKIL 137 (550)
T ss_dssp ECGGGHHHHH
T ss_pred EcHHHHHHHH
Confidence 9876655443
No 47
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=71.37 E-value=30 Score=34.51 Aligned_cols=103 Identities=7% Similarity=-0.047 Sum_probs=68.8
Q ss_pred CCCCeEEEEecCCC-CCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-
Q 009756 150 DEWQSIALGYTSGT-TASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL- 224 (526)
Q Consensus 150 ~~~~~a~i~~TSGs-TG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~- 224 (526)
.++.+|++....+. .+ ..-.+|.+.+...+...... .++++++++...++-+.. .....++++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE--FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCS--SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCccccc--ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccC
Confidence 35677776553221 12 13467888777666655543 478999999988875433 234455566667766666
Q ss_pred cccCHHHHHHHHHhcCceeeeccHHHHHHHH
Q 009756 225 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 255 (526)
Q Consensus 225 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 255 (526)
+....+.+...+++.++..+++.+.....+.
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 4577889999999999999998876655443
No 48
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=71.00 E-value=20 Score=35.63 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=66.1
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-c
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~ 225 (526)
.++.+|++....| -.+|.+.+...+...... .++++++++...++-+.. .....++++..|+..+.+ +
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 4567776643222 457888877666655543 578999999988876433 234455556666666666 4
Q ss_pred ccCHHHHHHHHHhcCceeeeccHHHHHHH
Q 009756 226 QVTAKAVYTAIATHGVTHFCAAPVVLNAI 254 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 254 (526)
....+.+...+++.++..+++.+.....+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 56788999999999999999877544433
No 49
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=70.13 E-value=11 Score=35.34 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=48.4
Q ss_pred cCCCCCCCCEEEEEcCCch--hHHHHHHhhhccCCeeeeccCccChH-----------------------HHHHHHhhcC
Q 009756 20 LLFPSSPSDLVSVIAPNVP--AMYEAQFGAPMAGAVLNSINIRLNAT-----------------------VVAFILSHAS 74 (526)
Q Consensus 20 ~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~-----------------------~l~~~l~~~~ 74 (526)
...|+.++|++..++|-+. .-+...++++..|+++++.+ +++. .+...+++.+
T Consensus 128 ~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 205 (369)
T 3hgu_A 128 QHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQD 205 (369)
T ss_dssp TTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCC
Confidence 6678999999999998733 22344555588999666543 3344 6667899999
Q ss_pred ceEEEEccchHHHH
Q 009756 75 SAVVIVDQEFFSLA 88 (526)
Q Consensus 75 ~~~vi~~~~~~~~~ 88 (526)
+.+++..+.....+
T Consensus 206 ~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 206 IRFLVTTPPVLREL 219 (369)
T ss_dssp EEEEEECHHHHHHH
T ss_pred CCEEEeCHHHHHHH
Confidence 99999988766554
No 50
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=67.52 E-value=39 Score=28.86 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=53.1
Q ss_pred cEEEEeccc--ccchhhHHHHHHHhhcc-eeeee-cccCHHHHHHHHHhcCceeeec--c----HHH--HHHHHccCCCC
Q 009756 194 AVFLWTLPM--FHGNGWSYTWSLAALCG-TSICL-RQVTAKAVYTAIATHGVTHFCA--A----PVV--LNAIANASPED 261 (526)
Q Consensus 194 ~~~~~~~p~--~~~~~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~i~~~~~t~l~~--~----P~~--~~~l~~~~~~~ 261 (526)
.+++...+. .|..|.......+...| .++.+ ....++.+.+.+++++++.+.. + +.. +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 444444443 67777765555555444 44444 4578899999999999997777 2 221 22222222111
Q ss_pred CCCCCCceeeEeccCCCCCHHHHHHH
Q 009756 262 TILPLTNVVNVNTAGAPPPPSLLFAM 287 (526)
Q Consensus 262 ~~~~l~~lr~~~~~Ge~l~~~~~~~~ 287 (526)
.. ...+ .+++||.+++++..+.+
T Consensus 173 ~~--~~~v-~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 KL--RDSV-KCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TC--GGGS-EEEEESSSCCHHHHHHH
T ss_pred CC--CCCC-EEEEECCCCCHHHHHHh
Confidence 11 0122 37889999998766554
No 51
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=63.10 E-value=40 Score=33.92 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=64.8
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHh---HhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-c
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~ 225 (526)
.++.+|++..... | ....+|.+.+...+..... ..+++++|++...++-.... +...++++..|+..+.+ +
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 5677888765331 2 2456888887766665544 45889999999888754332 34455555666666665 4
Q ss_pred ccCHHHHHHHHHhcCceeeeccH
Q 009756 226 QVTAKAVYTAIATHGVTHFCAAP 248 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~~P 248 (526)
....+.+...+++.++..+++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 57788999999999999998754
No 52
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=63.04 E-value=36 Score=33.70 Aligned_cols=82 Identities=6% Similarity=-0.149 Sum_probs=58.1
Q ss_pred eeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHHhcCceeee
Q 009756 170 VVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 245 (526)
Q Consensus 170 v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~ 245 (526)
..+|.+.+...+...... .++++++++...++-+..+ ....++++..|+..+.+ +....+++...+++.++..++
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 125 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEE
Confidence 357888877766655543 4788999999888764432 34455566667666666 346788899999999999998
Q ss_pred ccHHHHH
Q 009756 246 AAPVVLN 252 (526)
Q Consensus 246 ~~P~~~~ 252 (526)
+.+....
T Consensus 126 ~~~~~~~ 132 (529)
T 2v7b_A 126 ASGALVQ 132 (529)
T ss_dssp EEGGGHH
T ss_pred echhhhh
Confidence 8765543
No 53
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=62.89 E-value=50 Score=32.38 Aligned_cols=97 Identities=13% Similarity=-0.005 Sum_probs=64.8
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec-
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR- 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~- 225 (526)
.++.+|++... .+..+|.+.+...+...... .++.+++++...++-+..+ ....++++..|+..+.++
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 44566666421 13568888877766655543 4788999999888754332 345556666677776664
Q ss_pred ccCHHHHHHHHHhcCceeeec--cHHHHHHH
Q 009756 226 QVTAKAVYTAIATHGVTHFCA--APVVLNAI 254 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~--~P~~~~~l 254 (526)
....+.+...+++.+++.++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 467888999999999999988 65554444
No 54
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=61.57 E-value=24 Score=35.19 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEEcCCchhH--HHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHH
Q 009756 22 FPSSPSDLVSVIAPNVPAM--YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 89 (526)
Q Consensus 22 ~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 89 (526)
.++.++|++...+|-+..+ ...+++++ .|+..+.++ .++++.+...+++.++.+++..+.....+.
T Consensus 231 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 231 NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 6788999999888876443 23367777 999988775 578899999999999999999887665543
No 55
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=61.46 E-value=48 Score=32.68 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-c
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~ 225 (526)
.++.+|++.. + ....+|.+.+...+...... .++.+++++...++-+.. .....++++..|+..+.+ +
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCc
Confidence 4566776653 1 23468888877766665544 478999999988875433 234555666667766666 4
Q ss_pred ccCHHHHHHHHHhcCceeeeccHHHH
Q 009756 226 QVTAKAVYTAIATHGVTHFCAAPVVL 251 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~~P~~~ 251 (526)
....+.+...+++.++..+++.+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 56788899999999999998765443
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=59.59 E-value=29 Score=34.56 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=56.0
Q ss_pred CCCCCCCCEEEEEcCCchhHH-HHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHH
Q 009756 21 LFPSSPSDLVSVIAPNVPAMY-EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 91 (526)
Q Consensus 21 ~~g~~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 91 (526)
..++.++|++...+|-....- ..+++++..|+..+..++.+++..+...+++.++.+++..+.....+.+.
T Consensus 213 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 284 (541)
T 1v25_A 213 GTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY 284 (541)
T ss_dssp TTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred cccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhh
Confidence 357789999999888754332 24577888999999877667899999999999999999998877666544
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=59.57 E-value=61 Score=32.44 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=66.8
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---h-CCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---W-GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL- 224 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~- 224 (526)
.++.+|++.... .| ....+|.+.+...+...... . ++++++++...++-...+ ....++++..|+..+.+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 456677765421 12 13568888877666655443 3 788999998888754332 34455566667666666
Q ss_pred cccCHHHHHHHHHhcCceeeeccHHHHHHH
Q 009756 225 RQVTAKAVYTAIATHGVTHFCAAPVVLNAI 254 (526)
Q Consensus 225 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 254 (526)
+....+.+...++..++..+++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 346788899999999999999877655544
No 58
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=58.79 E-value=55 Score=32.71 Aligned_cols=95 Identities=4% Similarity=-0.072 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHh---HhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-c
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~ 225 (526)
.++.+|++.. .-.+|.+.+...+..... ..++++++++...++-+.. .....++++..|+..+.+ +
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeCC
Confidence 4556766531 235788887766665544 3478899999888875433 234455556666666666 4
Q ss_pred ccCHHHHHHHHHhcCceeeeccHHHHHHH
Q 009756 226 QVTAKAVYTAIATHGVTHFCAAPVVLNAI 254 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 254 (526)
....+.+...+++.++..+++.+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 56788899999999999999987655443
No 59
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=58.69 E-value=48 Score=32.18 Aligned_cols=106 Identities=9% Similarity=-0.003 Sum_probs=70.7
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhHh---CCcCCcEEEEecccccchhhHHHHHHHhhcceeeeec-
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW---GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR- 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~- 225 (526)
.++.+|++..............+|.+.+...+......+ +. +++++....+-... .....++++..|+..+.+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEeeCC
Confidence 456777776542211111336789988887777666554 43 89999887775433 2344556666677666664
Q ss_pred ---ccCHHHHHHHHHhcCceeeeccHHHHHHHHcc
Q 009756 226 ---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 257 (526)
Q Consensus 226 ---~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 257 (526)
....+++...+++.++..+++.+.....+...
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 34567889999999999999988877766554
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=58.02 E-value=60 Score=33.18 Aligned_cols=94 Identities=15% Similarity=0.032 Sum_probs=64.6
Q ss_pred CCCeEEEEecCCCCCCccceeecchhHHHHHHhhHh---HhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cc
Q 009756 151 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQ 226 (526)
Q Consensus 151 ~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~ 226 (526)
++.+|++.... .+| ....+|.+.+...+..... ..+++++|++..++|..... ....++++..|+..+.+ +.
T Consensus 90 pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCCC
Confidence 56677765422 122 2356888887766665544 45889999999988865432 34555666667766666 45
Q ss_pred cCHHHHHHHHHhcCceeeeccH
Q 009756 227 VTAKAVYTAIATHGVTHFCAAP 248 (526)
Q Consensus 227 ~~~~~~~~~i~~~~~t~l~~~P 248 (526)
+.++.+...+++.++..+++..
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 7889999999999999888753
No 61
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=54.12 E-value=68 Score=32.89 Aligned_cols=96 Identities=7% Similarity=0.030 Sum_probs=66.0
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHh----HhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL- 224 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~- 224 (526)
.++.+|++.... .+| ....+|.+.+...+..... ..+++++|++..++|..... ...+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 456777775432 122 2356888887766655443 45788999999998865432 34556666667766666
Q ss_pred cccCHHHHHHHHHhcCceeeeccHH
Q 009756 225 RQVTAKAVYTAIATHGVTHFCAAPV 249 (526)
Q Consensus 225 ~~~~~~~~~~~i~~~~~t~l~~~P~ 249 (526)
+.+..+.+...+++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 4578899999999999999988643
No 62
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=53.12 E-value=65 Score=31.61 Aligned_cols=80 Identities=11% Similarity=-0.057 Sum_probs=57.2
Q ss_pred eeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHHhcCceeee
Q 009756 170 VVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 245 (526)
Q Consensus 170 v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~ 245 (526)
-.+|.+.+...+...... .++++++++...++-+.. .....++++..|+..+.+ +....+.+...+++.++..++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 357888877766655543 478999999988875433 234555666667666666 456788899999999999999
Q ss_pred ccHHH
Q 009756 246 AAPVV 250 (526)
Q Consensus 246 ~~P~~ 250 (526)
+.+..
T Consensus 106 ~~~~~ 110 (503)
T 4fuq_A 106 CDPSK 110 (503)
T ss_dssp ECGGG
T ss_pred ECchh
Confidence 87643
No 63
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=51.22 E-value=44 Score=32.74 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=54.1
Q ss_pred CCCCCCCCEEEEEcCCchhH-HHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHH
Q 009756 21 LFPSSPSDLVSVIAPNVPAM-YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 89 (526)
Q Consensus 21 ~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 89 (526)
..++.++|++...+|-...+ +..+++++..|+..+..+ .+++..+...+++.++.+++..+.....+.
T Consensus 198 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 198 SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 45788999999988876432 334678889999988775 578899999999999999999987666554
No 64
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=50.74 E-value=1.1e+02 Score=30.63 Aligned_cols=101 Identities=4% Similarity=-0.187 Sum_probs=68.8
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ 226 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 226 (526)
.++.+|++....+ ..-.+|.+.+...+...... .++++++++...++-+.. .....++++..|+..+.+..
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEecC
Confidence 4567777655421 23568888877766655543 478899999988875433 23445566666776666644
Q ss_pred c----CHHHHHHHHHhcCceeeeccHHHHHHHHc
Q 009756 227 V----TAKAVYTAIATHGVTHFCAAPVVLNAIAN 256 (526)
Q Consensus 227 ~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 256 (526)
. ..+.+...++..++..++..+.....+..
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA 131 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHH
Confidence 2 34677888999999999999887776643
No 65
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=48.43 E-value=93 Score=30.80 Aligned_cols=70 Identities=9% Similarity=0.006 Sum_probs=54.9
Q ss_pred CCCCCCCCEEEEEcCCchhHHH---HHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHH
Q 009756 21 LFPSSPSDLVSVIAPNVPAMYE---AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 91 (526)
Q Consensus 21 ~~g~~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 91 (526)
..++.++|++...+|-...+-. .+++++..|++.+..+ ...+..+...+++.++.++...+.....+.+.
T Consensus 226 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 226 ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 3578899999999886654433 3788889999988765 46788888999999999999998876655443
No 66
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=48.21 E-value=79 Score=34.18 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHh---HhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-c
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~ 225 (526)
.++.+|++...+| ..+|.+.+...+..... ..++++++++...++-+.. .....++++..|+..+.+ +
T Consensus 74 ~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 4667777653222 45788887766665544 3578999999988876433 234555666667776666 4
Q ss_pred ccCHHHHHHHHHhcCceeeeccHHHH
Q 009756 226 QVTAKAVYTAIATHGVTHFCAAPVVL 251 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~~P~~~ 251 (526)
...++.+...+++.++..+++.+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 57788999999999999999876543
No 67
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=48.10 E-value=55 Score=33.23 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=55.8
Q ss_pred cCCCCCCCCEEEEEcCCchhHH-HHHHhhhccCCeeeecc-CccChHHHHHHHhhcCceEEEEccchHHHHHH
Q 009756 20 LLFPSSPSDLVSVIAPNVPAMY-EAQFGAPMAGAVLNSIN-IRLNATVVAFILSHASSAVVIVDQEFFSLAEE 90 (526)
Q Consensus 20 ~~~g~~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~v~l~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 90 (526)
...++.++|++...+|-+.+.- ..+|+.+..|++.+..+ ...++..+...+++.++.++...+.....+.+
T Consensus 197 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 197 SFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp GGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred HhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 3457889999999998875543 34788889999888764 35678899999999999999999877665543
No 68
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=47.98 E-value=57 Score=32.66 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=55.8
Q ss_pred cCCCCCCCCEEEEEcCCch-hHHHHHHhhhccCCeeeeccC-ccChHHHHHHHhhcCceEEEEccchHHHHHH
Q 009756 20 LLFPSSPSDLVSVIAPNVP-AMYEAQFGAPMAGAVLNSINI-RLNATVVAFILSHASSAVVIVDQEFFSLAEE 90 (526)
Q Consensus 20 ~~~g~~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 90 (526)
...++.++|++..++|-+. .....+++.+..|+..+..+. ...+..+...+++.++.++...+.....+.+
T Consensus 247 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 247 DYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp CSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred hhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 3457889999999998864 344567888889998887654 4677889999999999999999877665543
No 69
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=46.47 E-value=54 Score=32.54 Aligned_cols=69 Identities=9% Similarity=-0.036 Sum_probs=54.6
Q ss_pred CCCCCCCEEEEEcCCchhHHH---HHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHH
Q 009756 22 FPSSPSDLVSVIAPNVPAMYE---AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 91 (526)
Q Consensus 22 ~g~~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 91 (526)
.++.++|++...+|-+..+-. .+++++..|++.+..+ ..++..+...+++.++.+++..+.....+.+.
T Consensus 218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (539)
T 1mdb_A 218 CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDA 289 (539)
T ss_dssp HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence 467889999998887644333 4788899999988764 56888999999999999999998876665543
No 70
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=46.24 E-value=1e+02 Score=30.19 Aligned_cols=88 Identities=10% Similarity=-0.149 Sum_probs=59.6
Q ss_pred CCCCeEEEEecCCCCCCccceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-c
Q 009756 150 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 225 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~ 225 (526)
.++.+|++.. .-.+|.+.+...+...... .++.+++++....+-... .....++++..|+..+.+ +
T Consensus 14 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e-~~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVWR---------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPE-MIINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHH-HHHHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEeC---------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCC
Confidence 4556666541 1357888877766655544 478899998877765332 234555666667766666 4
Q ss_pred ccCHHHHHHHHHhcCceeeecc
Q 009756 226 QVTAKAVYTAIATHGVTHFCAA 247 (526)
Q Consensus 226 ~~~~~~~~~~i~~~~~t~l~~~ 247 (526)
....+.+...++..++..++..
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 5678899999999999888764
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=44.91 E-value=1.1e+02 Score=30.14 Aligned_cols=78 Identities=9% Similarity=-0.161 Sum_probs=54.9
Q ss_pred eeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHHhcCceeee
Q 009756 170 VVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 245 (526)
Q Consensus 170 v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~ 245 (526)
-.+|.+.+...+...... .++.+++++....+-... .....++++..|+..+.+ +....+.+...++..++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 347888877766655543 478899998887765432 234455566667766666 457788999999999999888
Q ss_pred ccH
Q 009756 246 AAP 248 (526)
Q Consensus 246 ~~P 248 (526)
+..
T Consensus 107 ~~~ 109 (521)
T 3l8c_A 107 AIE 109 (521)
T ss_dssp ESS
T ss_pred ecC
Confidence 754
No 72
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=44.78 E-value=1.7e+02 Score=27.14 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccC----------ccChHHHHHHHhhcCceEEEE
Q 009756 24 SSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINI----------RLNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 24 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~----------~~~~~~l~~~l~~~~~~~vi~ 80 (526)
+++||.|.+..|....+. -++...|+.+++++. ....+.+...++. +.++++.
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 185 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLF 185 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEE
Confidence 356787777666554332 334445665554433 1355667777765 5555543
No 73
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=43.48 E-value=2e+02 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCc-------cChHHHHHHHhhcCceEEEEc
Q 009756 24 SSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR-------LNATVVAFILSHASSAVVIVD 81 (526)
Q Consensus 24 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 81 (526)
+++||.|.+..|....+ ..++...|+.+++++.. .+.+.+...++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 36788887766654443 33445667777666542 567888888876677777654
No 74
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=43.03 E-value=59 Score=22.46 Aligned_cols=47 Identities=28% Similarity=0.220 Sum_probs=32.9
Q ss_pred hHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCC
Q 009756 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483 (526)
Q Consensus 422 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~ 483 (526)
..++++.|.+.|.|.+|..+..+.+ +.+.+... +.+++.+++.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~~----------d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVETD----------TLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEES----------SHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEEC----------CHHHHHHHHHHHhc
Confidence 4688999999999999988655443 55555553 45667777765554
No 75
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=38.50 E-value=92 Score=28.62 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=45.6
Q ss_pred CCC-CCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccc
Q 009756 21 LFP-SSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 83 (526)
Q Consensus 21 ~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 83 (526)
+.| +++|+.|.+....+-.-..+-++|...|.-++.+-|...+..-...++..+++++++...
T Consensus 64 ~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 64 KEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344 478888645555566777777888888987776656555555677889999999999764
No 76
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=38.02 E-value=1.3e+02 Score=33.81 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=64.5
Q ss_pred cCCCCCCCCEEEEEcCCchhHHH-HHHhhhccCCeeeeccCc--cChHHHHHHHhhcCceEEEEccchHHHHHHHH-HHh
Q 009756 20 LLFPSSPSDLVSVIAPNVPAMYE-AQFGAPMAGAVLNSINIR--LNATVVAFILSHASSAVVIVDQEFFSLAEEAL-KMM 95 (526)
Q Consensus 20 ~~~g~~~gd~V~i~~~~~~~~~~-~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~ 95 (526)
...++.++|++..+.+-+.+..+ -+|+.+..|++.+..++. .++..+...+++.++.++...+.....+.... ...
T Consensus 640 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~ 719 (1304)
T 2vsq_A 640 DYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWM 719 (1304)
T ss_dssp CSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHH
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcC
Confidence 45688999999998888766544 478888999998877653 57788999999999999999988776654321 112
Q ss_pred hhccCCCCCCCeEEEEccC
Q 009756 96 EANSEGKLKTPHLIVIGDE 114 (526)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~ 114 (526)
. +++.++.-++.
T Consensus 720 ~-------~lr~~~~gGe~ 731 (1304)
T 2vsq_A 720 K-------GLRCILFGGER 731 (1304)
T ss_dssp H-------TCSEEEEESSC
T ss_pred C-------CccEEEEecCC
Confidence 2 45666665543
No 77
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=37.95 E-value=48 Score=32.59 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=53.4
Q ss_pred CCCCCCCCEEEEEcCCchhH-HHHHHhhhccCCeeeeccCc--cChHHHHHHHhhcCceEEEEccchHHHH
Q 009756 21 LFPSSPSDLVSVIAPNVPAM-YEAQFGAPMAGAVLNSINIR--LNATVVAFILSHASSAVVIVDQEFFSLA 88 (526)
Q Consensus 21 ~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 88 (526)
..++.++|++...+|-+..+ +..+++++..|++.+.++.. .++..+...+++.++.+++..+.....+
T Consensus 178 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 178 DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 45788899999999877543 34578889999998877653 5678889999999999999988765443
No 78
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=36.18 E-value=1.3e+02 Score=22.10 Aligned_cols=62 Identities=13% Similarity=-0.072 Sum_probs=36.9
Q ss_pred hHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCC
Q 009756 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483 (526)
Q Consensus 422 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~ 483 (526)
...|+..+.+.|+|.++-=+-.......-.+-+-|++.+.....+..+...++.+.|++.++
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678888899998877544443322122445667776654433333356677777777665
No 79
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=35.54 E-value=1.8e+02 Score=29.35 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=54.4
Q ss_pred CCCCCCCEEEEEcCCchhHHH---HHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHHH
Q 009756 22 FPSSPSDLVSVIAPNVPAMYE---AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 92 (526)
Q Consensus 22 ~g~~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 92 (526)
.++.++|++...+|-+..+-. .+++++..|++.+..+. .+...+...+++.++.++...+.....+.+..
T Consensus 220 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 220 CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQAL 292 (617)
T ss_dssp HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhh
Confidence 477889999999886544333 37888889999887654 57788889999999999999998777665543
No 80
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=33.24 E-value=2.3e+02 Score=27.94 Aligned_cols=96 Identities=6% Similarity=-0.143 Sum_probs=61.0
Q ss_pred CCCCeEEEEecCCCCCCc--cceeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee
Q 009756 150 DEWQSIALGYTSGTTASP--KGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL 224 (526)
Q Consensus 150 ~~~~~a~i~~TSGsTG~p--K~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~ 224 (526)
.++.+|++...+ ..+.. ..-.+|.+.+...+...... .+. ++|++...++-...+ ....++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 456777765432 22222 23567888877766665544 356 699998888754332 34455556666666666
Q ss_pred -cccCHHHHHHHHHhcCceeeeccH
Q 009756 225 -RQVTAKAVYTAIATHGVTHFCAAP 248 (526)
Q Consensus 225 -~~~~~~~~~~~i~~~~~t~l~~~P 248 (526)
+....+.+...+++.++..++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 456788899999999998877653
No 81
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=32.63 E-value=1.5e+02 Score=29.48 Aligned_cols=84 Identities=7% Similarity=-0.084 Sum_probs=58.8
Q ss_pred eeecchhHHHHHHhhHhH---hCCcCCcEEEEecccccchhhHHHHHHHhhcceeeeecc-cC-------HHHHHHHHHh
Q 009756 170 VVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ-VT-------AKAVYTAIAT 238 (526)
Q Consensus 170 v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~i~~ 238 (526)
-.+|.+.+...+...... .++++++++...++-+.. .....++++..|+..+.+.. .. ...+...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 568888887776665544 478999999988875433 23455666666776666642 33 5778888999
Q ss_pred cCceeeeccHHHHHHH
Q 009756 239 HGVTHFCAAPVVLNAI 254 (526)
Q Consensus 239 ~~~t~l~~~P~~~~~l 254 (526)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999877655443
No 82
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=31.20 E-value=87 Score=21.35 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=31.4
Q ss_pred hHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCC
Q 009756 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483 (526)
Q Consensus 422 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~ 483 (526)
..++.+.+.++|.|.+|..+..+.+ +.+.+... +.+++.+++.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~~----------d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEAD----------SMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEECS----------SHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEEC----------CHHHHHHHHHHHhc
Confidence 3688899999999999987654332 55555543 34666666665554
No 83
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=30.48 E-value=88 Score=28.93 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccc
Q 009756 24 SSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 83 (526)
Q Consensus 24 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 83 (526)
+++|.+..+....+-+-..+-++|.++|.-++.+-|...+..-...++.+++++++++..
T Consensus 83 l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 567776666777777888888889999988877777766666778899999999999753
No 84
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=30.10 E-value=1.6e+02 Score=26.96 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCCCCCCCEEEEEcCCch
Q 009756 21 LFPSSPSDLVSVIAPNVP 38 (526)
Q Consensus 21 ~~g~~~gd~V~i~~~~~~ 38 (526)
=.-+++||+|+|++|.+.
T Consensus 6 P~~L~~GD~I~ivaPSs~ 23 (327)
T 4h1h_A 6 PAKLKQGDEIRIIAPSRS 23 (327)
T ss_dssp CCCCCTTCEEEEECSSSC
T ss_pred CCCCCCCCEEEEEeCCCC
Confidence 345799999999999863
No 85
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=28.56 E-value=1.1e+02 Score=20.46 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=36.8
Q ss_pred EEEEEecCCCchhhhhhhHHHHHHHHHhcCCCccCCcEEEeccccCC---CCcccc
Q 009756 453 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKS---ATGKIQ 505 (526)
Q Consensus 453 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~lP~t---~~GKv~ 505 (526)
.+-+.+-.++..+.+.+..+++.+.+.+-|..-.--.++++.++|+. -.||+.
T Consensus 2 i~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~~~ 57 (70)
T 3ej9_B 2 FIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGRIH 57 (70)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTCCT
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeeeEc
Confidence 34566667888888888888888888887764333345667779875 356654
No 86
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=27.60 E-value=1.5e+02 Score=20.32 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=43.9
Q ss_pred CCeeechHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHh
Q 009756 416 GGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA 480 (526)
Q Consensus 416 ~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~ 480 (526)
.+..=.+.++|..++-.+.|.+..++...... ..-..+++.|..+++......+++...+.+
T Consensus 13 ~a~~~~i~Eler~~rine~VlR~l~vr~d~~r---~YE~m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 13 EMPEDRVNDLARELRIRDNVRRVMVVASTTPG---RYEVNIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp ECCHHHHHHHHHHHHTSTTEEEEEEEECSSTT---EEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCHhHHHHHHHHhCCCHHHHHHHHHhccCCC---ceEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 33334567899999989999999999877665 455667778887776555556666665544
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.54 E-value=1.9e+02 Score=26.54 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.6
Q ss_pred CCCCCCCEEEEEcCCch
Q 009756 22 FPSSPSDLVSVIAPNVP 38 (526)
Q Consensus 22 ~g~~~gd~V~i~~~~~~ 38 (526)
.-+++||+|+|++|.+.
T Consensus 8 ~~L~~GD~I~ivaPSs~ 24 (336)
T 3sr3_A 8 KSLKYGDTIGIYSPSSP 24 (336)
T ss_dssp CCCCTTCEEEEECSSSC
T ss_pred CCCCCCCEEEEEeCCCC
Confidence 35799999999999884
No 88
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.86 E-value=1.6e+02 Score=27.07 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.0
Q ss_pred CCCCCCEEEEEcCCch
Q 009756 23 PSSPSDLVSVIAPNVP 38 (526)
Q Consensus 23 g~~~gd~V~i~~~~~~ 38 (526)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4789999999999875
No 89
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=25.82 E-value=3.8e+02 Score=25.47 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=38.3
Q ss_pred CCCCCEEEEEc-CCchhHHHHH--------HhhhccCCeeeeccC---ccChHHHHHHHhh-cCceEEEEcc
Q 009756 24 SSPSDLVSVIA-PNVPAMYEAQ--------FGAPMAGAVLNSINI---RLNATVVAFILSH-ASSAVVIVDQ 82 (526)
Q Consensus 24 ~~~gd~V~i~~-~~~~~~~~~~--------lA~~~~G~~~v~l~~---~~~~~~l~~~l~~-~~~~~vi~~~ 82 (526)
+++||.|.+.. +........+ -.+...|+.+..++. ..+.+.+...++. -++++|+++.
T Consensus 113 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 113 LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 57899988776 4333332222 234457888877765 2566788888875 5788888876
No 90
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=24.85 E-value=2e+02 Score=26.80 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.7
Q ss_pred CCCCCCCEEEEEcCCch
Q 009756 22 FPSSPSDLVSVIAPNVP 38 (526)
Q Consensus 22 ~g~~~gd~V~i~~~~~~ 38 (526)
.-+++||+|+|++|.+.
T Consensus 38 ~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCTTCEEEEECSSCC
T ss_pred CCCCCcCEEEEEeCCCC
Confidence 45799999999999874
No 91
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=24.51 E-value=1.6e+02 Score=20.67 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=36.0
Q ss_pred chHHHHHHHHcC--CCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCC
Q 009756 421 SSVEVEKVLYLH--PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483 (526)
Q Consensus 421 ~~~~ie~~l~~~--~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~ 483 (526)
....|++.+.++ |+|.++-=+-...-...-.+.+-++..++....+..+...++.+.++++++
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~ 75 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFP 75 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCC
Confidence 456677888888 888765433332211112344667766554433223356777777777765
No 92
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=24.15 E-value=1.5e+02 Score=27.40 Aligned_cols=60 Identities=18% Similarity=0.062 Sum_probs=40.9
Q ss_pred CCCCCCCEEEEEcC-CchhHHHHHHhhhccCCeee-eccCccChHHHHHHHhhcCceEEEEcc
Q 009756 22 FPSSPSDLVSVIAP-NVPAMYEAQFGAPMAGAVLN-SINIRLNATVVAFILSHASSAVVIVDQ 82 (526)
Q Consensus 22 ~g~~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~~vi~~~ 82 (526)
.++++|++|+|+.. -..-.+++.+|-. .|+..+ ..+..-..++....++..+++.++..+
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~ 224 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEE 224 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHH
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCcEEEecC
Confidence 47899999999998 4567777777654 687544 344433344455677788998887543
No 93
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=23.30 E-value=1.3e+02 Score=27.69 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCc----cChHHHHHHHhhcCceEEEEc
Q 009756 25 SPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR----LNATVVAFILSHASSAVVIVD 81 (526)
Q Consensus 25 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 81 (526)
++||.|.+..+....+.....++...|+.++.++.. .+.+.+...++. ++++++..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 466776665554444333333334456555544332 344555555543 45555543
No 94
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=23.05 E-value=1.5e+02 Score=27.14 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=44.0
Q ss_pred cCCCCCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEcc
Q 009756 20 LLFPSSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 82 (526)
Q Consensus 20 ~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 82 (526)
...++++|++|+|+..-+.-.+.+++|....|+.++-++. +.++ ..+++..+++.+|-..
T Consensus 157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEEEEC-
T ss_pred cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEEEeCC
Confidence 4558899999999998777778888887777877776653 2333 4567778888888654
No 95
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=22.85 E-value=3.8e+02 Score=25.97 Aligned_cols=77 Identities=6% Similarity=-0.180 Sum_probs=53.0
Q ss_pred eeecchhHHHHHHhhHhHhCCcCCcEEEEecccccchhhHHHHHHHhhcceeeee-cccCHHHHHHHHHhcCceeeeccH
Q 009756 170 VVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAP 248 (526)
Q Consensus 170 v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P 248 (526)
-.+|.+.+...+......+ ..++++...++-... .....++++..|+..+.+ +....+.+...+++.++..+++.+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~-~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAME-TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHH-HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 4688888887777766654 357788777765333 234556666677777766 456788899999999999999865
Q ss_pred H
Q 009756 249 V 249 (526)
Q Consensus 249 ~ 249 (526)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 96
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=22.66 E-value=97 Score=21.79 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=31.8
Q ss_pred hHHHHHHHHcCCCeeeeEEEEcCCCCCCceeEEEEEecCCCchhhhhhhHHHHHHHHHhcCC
Q 009756 422 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 483 (526)
Q Consensus 422 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~ 483 (526)
..++.+.+.++|.|.+|..+.-+.+ +.+.+... +.+++.+++.+++.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~~----------d~~~l~~~l~~~l~ 61 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRLK----------DVEELDDVVTQGIL 61 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEES----------SGGGHHHHCCCCCT
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEEC----------CHHHHHHHHHHhcc
Confidence 5788899999999999988755443 55555554 23555666655554
No 97
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=22.03 E-value=4.4e+02 Score=23.76 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCc----cChHHHHHHHhhcCceEEEE
Q 009756 24 SSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR----LNATVVAFILSHASSAVVIV 80 (526)
Q Consensus 24 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~ 80 (526)
+++||.|.+..|....+ ..++...|+.+++++.. .+.+.+...+.. ++++++.
T Consensus 105 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 161 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQY---RQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWI 161 (363)
T ss_dssp CSTTCEEEEEESSCHHH---HHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEE
T ss_pred ccCCCEEEEcCCChHHH---HHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEE
Confidence 35678877776644432 22334456555544322 245566666643 4566654
No 98
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=21.66 E-value=1.9e+02 Score=27.55 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=36.3
Q ss_pred CCCCCEEEEEc-CCchhHHHHH--------HhhhccCCeeeeccCc----cChHHHHHHHhh-cCceEEEEcc
Q 009756 24 SSPSDLVSVIA-PNVPAMYEAQ--------FGAPMAGAVLNSINIR----LNATVVAFILSH-ASSAVVIVDQ 82 (526)
Q Consensus 24 ~~~gd~V~i~~-~~~~~~~~~~--------lA~~~~G~~~v~l~~~----~~~~~l~~~l~~-~~~~~vi~~~ 82 (526)
+++||.|.+.. +........+ -.+...|+.+..++.+ .+.+.+...++. -++++|++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 46788887765 3333333222 2344568777776653 566778887774 4678887765
No 99
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=21.11 E-value=3.3e+02 Score=26.03 Aligned_cols=62 Identities=11% Similarity=-0.047 Sum_probs=42.5
Q ss_pred EEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEccchHHHHHHH
Q 009756 30 VSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 91 (526)
Q Consensus 30 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 91 (526)
..+....+-+-..+-++|.+.|.-++.+-|...+..-...++..+++++++..........+
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a 223 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEG 223 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHH
Confidence 44555556666677777888888766555554555567788999999999987654444433
No 100
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=21.10 E-value=2.5e+02 Score=26.80 Aligned_cols=62 Identities=18% Similarity=0.013 Sum_probs=44.5
Q ss_pred CCC-CCCCCEEEEEcCCchhHHHHHHhhhccCCeeeeccCccChHHHHHHHhhcCceEEEEcc
Q 009756 21 LFP-SSPSDLVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 82 (526)
Q Consensus 21 ~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 82 (526)
+.| +++|....+....+-+-..+-++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 167 ~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 344 36675544555556777777788888898777666665555667788999999999974
No 101
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.01 E-value=1.8e+02 Score=27.72 Aligned_cols=53 Identities=17% Similarity=0.050 Sum_probs=26.0
Q ss_pred EEEcCCchhHHH-HHHhhhccCCeeeeccCccChH--HHHHHHhhcCceEEEEccc
Q 009756 31 SVIAPNVPAMYE-AQFGAPMAGAVLNSINIRLNAT--VVAFILSHASSAVVIVDQE 83 (526)
Q Consensus 31 ~i~~~~~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~vi~~~~ 83 (526)
+++++++.+.+. ++.++++.|-.++.-++.+..- .+...+...+.+++.++..
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM 155 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 344445544433 3445555665444444444332 1222556667776666554
Done!