BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009759
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 43/351 (12%)
Query: 145 KYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKV-----------PLSLALS 193
K L E G E+ +T+ G+P ++ +P ++ +V P LAL+
Sbjct: 38 KQLAERGHEIHFITS--GLPFRL-------NKVYPNIYFHEVTVNQYSVFQYPPYDLALA 88
Query: 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC--VPIVMSYH-THVPVYIPRYTFSW 250
++ R DI+H A + +++ + IV + H T + V + +
Sbjct: 89 SKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNN 148
Query: 251 LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRS 309
L I+F +D+ V +V+ E + NK I+ +D + R
Sbjct: 149 L-------IRFGIEQSDV--VTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKR-DM 198
Query: 310 SEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELE 366
++++ E +K LI H+ V++ D ++ + E A++ +GDGP +
Sbjct: 199 TQLKKEYGISESEKILI-HISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTIL 257
Query: 367 KMFTGMPAVFTGMLLGEE--LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424
++ + + LG++ +++ A D+ ++ SE E+ GLV+LEAM+ G+P +G R G
Sbjct: 258 QLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVG 317
Query: 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 475
GIP++I Q G GYL GD + LL ++EL MG+ AR+ +
Sbjct: 318 GIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESV 365
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 43/351 (12%)
Query: 145 KYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKV-----------PLSLALS 193
K L E G E+ +T+ G+P ++ +P ++ +V P LAL+
Sbjct: 58 KQLAERGHEIHFITS--GLPFRL-------NKVYPNIYFHEVTVNQYSVFQYPPYDLALA 108
Query: 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC--VPIVMSYH-THVPVYIPRYTFSW 250
++ R DI+H A + +++ + IV + H T + V + +
Sbjct: 109 SKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNN 168
Query: 251 LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRS 309
L I+F +D+ V +V+ E + NK I+ +D + R
Sbjct: 169 L-------IRFGIEQSDV--VTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKR-DM 218
Query: 310 SEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELE 366
++++ E +K LI H+ V++ D ++ + E A++ +GDGP +
Sbjct: 219 TQLKKEYGISESEKILI-HISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTIL 277
Query: 367 KMFTGMPAVFTGMLLGEE--LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424
++ + + LG++ +++ A D+ ++ SE E+ GLV+LEAM+ G+P +G R G
Sbjct: 278 QLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVG 337
Query: 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 475
GIP++I Q G GYL GD + LL ++EL MG+ AR+ +
Sbjct: 338 GIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESV 385
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 289 NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP-DKPLIVHVGRL----GVEKSLDFLKR 343
++I + G D E + P + R R G P ++ VGRL G + + +
Sbjct: 188 DRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 247
Query: 344 VMDRLPEARI-AFIGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAYASGD 393
+ DR P+ + I GP YR E++ F EL Y + D
Sbjct: 248 LFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAAD 307
Query: 394 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 453
+ +PS +E+ GLV +EA +SG PV+ R GG+P + E + G + +P D L+
Sbjct: 308 IVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALAT 367
Query: 454 LEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496
LL + E R MG+ A + + W AAT + YN AI
Sbjct: 368 ---LLDDDETRIRMGEDAVEHARTFSW-AATAAQLSSLYNDAI 406
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 289 NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP-DKPLIVHVGRL----GVEKSLDFLKR 343
++I + G D E + P + R R G P ++ VGRL G + + +
Sbjct: 208 DRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 267
Query: 344 VMDRLPEARI-AFIGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAYASGD 393
+ DR P+ + I GP YR E++ F EL Y + D
Sbjct: 268 LFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAAD 327
Query: 394 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 453
+ +PS +E+ GLV +EA +SG PV+ R GG+P + E + G + +P D L+
Sbjct: 328 IVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALAT 387
Query: 454 LEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496
LL + E R MG+ A + + W AAT + YN AI
Sbjct: 388 ---LLDDDETRIRMGEDAVEHARTFSW-AATAAQLSSLYNDAI 426
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 152/381 (39%), Gaps = 46/381 (12%)
Query: 124 FVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV---TTHEGVPQEFYGAKLIGSRSFPC 180
V P F G ++ + LR+ G EV V+ + H +P + G ++ P
Sbjct: 25 MVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYV----VSGGKAVPI 80
Query: 181 PWYQKVP---LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237
P+ V A ++ +A D++H P L + + PIV ++HT
Sbjct: 81 PYNGSVARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLAL-QAAEGPIVATFHT 139
Query: 238 HVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 297
+ F +++P K + R A V +A +EA ++ + I G
Sbjct: 140 STTKSLTLSVFQGILRPYHE--KIIGRIA----VSDLARRWQMEA---LGSDAVEI-PNG 189
Query: 298 VDSESF--------HPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP 349
VD SF +PR E R L G D+P R G+ L L +++ R P
Sbjct: 190 VDVASFADAPLLDGYPR----EGRTVLFLGRYDEP------RKGMAVLLAALPKLVARFP 239
Query: 350 EARIAFIGDGPYREELEKMFTGMPAV--FTGMLLGEELSQAYASGDVFVMPS-ESETLGL 406
+ I +G G +EL + + F G + + A S DV+ P E+ G+
Sbjct: 240 DVEILIVGRGD-EDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGI 298
Query: 407 VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET 466
V++EAM++G VV ++ DG G L D D + L +L + +LR
Sbjct: 299 VLVEAMAAGTAVVASDLDAFRRVL---ADGDAGRLVPVDDADGMAAALIGILEDDQLRAG 355
Query: 467 MGQAARQEMEKYDWRAATRTI 487
A + + +YDW + I
Sbjct: 356 YVARASERVHRYDWSVVSAQI 376
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 297 GVDSESFHPRFRSSEMRWRLSNGEPDK-PLIVHVGRLGVEKSLDFLKRVMDRL----PEA 351
GVD + F P + R G D P+I RL K D L + M ++ P+A
Sbjct: 171 GVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 352 RIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES-------E 402
++ +G G Y L ++ T + F G L +++ A+ D+F MP+ + E
Sbjct: 231 QLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 403 TLGLVVLEAMSSGIPVVGVRAGGIPDII 430
LG+V LEA + G+PV+ +GG P+ +
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETV 318
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 297 GVDSESFHPRFRSSEMRWRLSNGEPDK-PLIVHVGRLGVEKSLDFLKRVMDRL----PEA 351
GVD + F P + R G D P+I RL K D L + M ++ P+A
Sbjct: 171 GVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 352 RIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES-------E 402
++ +G G Y L ++ T + F G L +++ A+ D+F MP+ + E
Sbjct: 231 QLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 403 TLGLVVLEAMSSGIPVVGVRAGGIPDII 430
LG+V LEA + G+PV+ +GG P+ +
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETV 318
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 320 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 366
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 367 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423
K+ L+G E++ + DV + S E GL V EAM G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAV 347
Query: 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 477
GGI I DG+ G+L D ++ + + LL + E+ + MG A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 320 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 366
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 367 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423
K+ L+G E++ + DV + S GL V EAM G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRAGFGLTVTEAMWKGKPVIGRAV 347
Query: 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 477
GGI I DG+ G+L D ++ + + LL + E+ + MG A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 383 EELSQAYA----SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI 438
+EL+ YA G VF + S E GL +EAM+SG+P V R GG +I+ GK
Sbjct: 346 QELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEIL---DGGKY 402
Query: 439 GYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATR 485
G L +P D +D L ++E + +Q + E+Y W+ R
Sbjct: 403 GVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETAR 450
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 320 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 366
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVXAHDDPEGWIYFEKTLR 287
Query: 367 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423
K+ L+G E++ + DV + S E GL V EA G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQXSIREGFGLTVTEAXWKGKPVIGRAV 347
Query: 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 477
GGI I DG+ G+L D ++ + + LL + E+ + G A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEXGAKAKERVRK 396
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGML--- 380
PLI +GRL +K D + + L + + + G +++ EK+ M + G +
Sbjct: 328 PLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAV 387
Query: 381 --LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGK 437
L+ +G DV +PS E GL+ L+ M G P GG+ D + E + G
Sbjct: 388 VKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTG- 446
Query: 438 IGYLFNPGDLD-DC 450
F+ G L DC
Sbjct: 447 ----FHMGRLSVDC 456
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 314 WRLSNG-EPDKPLIVHVG----RLGVEKSLDFLKRVMDRLPEARIAFI--GDGPYREELE 366
+R NG + + L++ VG R GV++S++ L + + L + F+ D P + E
Sbjct: 186 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEAL 245
Query: 367 KMFTGMPA---VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423
G+ + F+G ++S+ A+ D+ + P+ E G+V+LEA+++G+PV+
Sbjct: 246 AEKLGVRSNVHFFSGR---NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAV 302
Query: 424 GGIPDIIPEDQDGK-IGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 479
G I + G I F+ L++ L K L LR + AR + D
Sbjct: 303 CGYAHYIADANCGTVIAEPFSQEQLNEVLRK---ALTQSPLRMAWAENARHYADTQD 356
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 107/286 (37%), Gaps = 54/286 (18%)
Query: 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR 264
PD++H + GALI K +P V + H +P + F H
Sbjct: 123 PDVVHFHDWHTVFAGALI-KKYFKIPAVFTIHRLNKSKLPAFYF--------------HE 167
Query: 265 AADLTLVPSVAIGKDLEAARVTA--------------------ANKIRIWKKGVD----S 300
A L P I + + KI G+D +
Sbjct: 168 AGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWN 227
Query: 301 ESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP------EAR 352
ES+ R + LS G + + +GR +K +D L + ++ L E R
Sbjct: 228 ESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMR 287
Query: 353 IAFIGDGP-----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 407
IG G + LE+ G V T ML E + + Y S D ++PS E GLV
Sbjct: 288 FIIIGKGDPELEGWARSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLV 346
Query: 408 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 453
LEAM G + GG+ DII ++ G + +PG+L + + K
Sbjct: 347 ALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGDPGELANAILK 391
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 107/286 (37%), Gaps = 54/286 (18%)
Query: 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR 264
PD++H + GALI K +P V + H +P + F H
Sbjct: 123 PDVVHFHDWHTVFAGALI-KKYFKIPAVFTIHRLNKSKLPAFYF--------------HE 167
Query: 265 AADLTLVPSVAIGKDLEAARVTA--------------------ANKIRIWKKGVD----S 300
A L P I + + KI G+D +
Sbjct: 168 AGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWN 227
Query: 301 ESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP------EAR 352
ES+ R + LS G + + +GR +K +D L + ++ L E R
Sbjct: 228 ESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMR 287
Query: 353 IAFIGDGP-----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 407
IG G + LE+ G V T ML E + + Y S D ++PS E GLV
Sbjct: 288 FIIIGKGDPELEGWARSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLV 346
Query: 408 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 453
LEAM G + GG+ DII ++ G + +PG+L + + K
Sbjct: 347 ALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGDPGELANAILK 391
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 107/286 (37%), Gaps = 54/286 (18%)
Query: 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR 264
PD++H + GALI K +P V + H +P + F H
Sbjct: 124 PDVVHFHDWHTVFAGALI-KKYFKIPAVFTIHRLNKSKLPAFYF--------------HE 168
Query: 265 AADLTLVPSVAIGKDLEAARVTA--------------------ANKIRIWKKGVD----S 300
A L P I + + KI G+D +
Sbjct: 169 AGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWN 228
Query: 301 ESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP------EAR 352
ES+ R + LS G + + +GR +K +D L + ++ L E R
Sbjct: 229 ESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMR 288
Query: 353 IAFIGDGP-----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 407
IG G + LE+ G V T ML E + + Y S D ++PS E GLV
Sbjct: 289 FIIIGKGDPELEGWARSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLV 347
Query: 408 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 453
LEAM G + GG+ DII ++ G + +PG+L + + K
Sbjct: 348 ALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGDPGELANAILK 392
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 327 VHVGRLGVEKSLDFLKRVMDRLPEARIAFIG---DGPYREELEKMFTGMP---AVFTGML 380
+ V R+ EK ++ V +L + ++ +G G + E + + F G +
Sbjct: 27 LSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIXKIAPDNVKFLGSV 86
Query: 381 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY 440
EEL Y+ + ++ E GL +EA +SG PV+ V GG + + + K GY
Sbjct: 87 SEEELIDLYSRCKGLLCTAKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINE---KTGY 143
Query: 441 LFN 443
L N
Sbjct: 144 LVN 146
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 335 EKSLDFLKRVMDRLP------EARIAFIGDGP-----YREELEKMFTGMPAVFTGMLLGE 383
+K +D L + ++ L E R IG G + LE+ G V T ML E
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKH-GNVKVITEMLSRE 107
Query: 384 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN 443
+ + Y S D ++PS E GLV LEAM G + GG+ DII ++ G + +
Sbjct: 108 FVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGD 166
Query: 444 PGDLDDCLSK 453
PG+L + + K
Sbjct: 167 PGELANAILK 176
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 395 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 454
FV P+ E GL V+EAM+ G+P GG +II GK G+ +P D L
Sbjct: 668 FVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVH---GKSGFHIDPYHGDQAADTL 724
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 314 WRLSNG-EPDKPLIVHVG----RLGVEKSLDFLKRVMDRLPEARIAFI--GDGPYREELE 366
+R NG + + L++ VG R GV++S++ L + + L + F+ D P + E
Sbjct: 186 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEAL 245
Query: 367 KMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 426
G+ + ++S+ A+ D+ + P+ E G+V+LEA+++G+PV+ G
Sbjct: 246 AEKLGVRSNVHFFSGRNDVSELXAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGY 305
Query: 427 PDIIPEDQDGK-IGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 479
I + G I F+ L++ L K L LR + AR + D
Sbjct: 306 AHYIADANCGTVIAEPFSQEQLNEVLRK---ALTQSPLRXAWAENARHYADTQD 356
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 322 DKPLIVHVGRLGVEKSLDFL----KRVMDRLPEARIAFIGDGPYREEL--------EKMF 369
D L +++ R K LD R + + P+A++ F+ + + + E +
Sbjct: 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVA 242
Query: 370 TGMPAVFTGM---------LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 420
+G+ VFT + L E + Y + DV V S E GL E G P++
Sbjct: 243 SGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII 302
Query: 421 VRAGGIPDIIPEDQDGKI 438
GG D D KI
Sbjct: 303 SAVGGADDYFSGDCVYKI 320
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 394 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 453
FV P+ E GL V+EA + G+P GG +II GK G+ +P D
Sbjct: 667 AFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVH---GKSGFHIDPYHGDQAADT 723
Query: 454 L 454
L
Sbjct: 724 L 724
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 125/331 (37%), Gaps = 60/331 (18%)
Query: 175 SRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASS-PGIMVFGALIIAKLLCVPIVM 233
+ +P W + LSLA + + ++PD++HA M + A+ +P ++
Sbjct: 101 GKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIPSLL 160
Query: 234 SYHT-----------HVPVYIPRYTFSWLVKPMWLVIKFLHRA-----ADLTLVPSVA-- 275
+ H + +P + F + + FL A T+ PS A
Sbjct: 161 TIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEE 220
Query: 276 -----IGKDLEAARVTAANKIRIWKKGVDSESFHP--------RFRSSEMRWRLSN---- 318
G LE + A+ + G+D++ ++P + ++ ++ R N
Sbjct: 221 ILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAV 280
Query: 319 ------GEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFT 370
+ PL + RL +K +D + +D + R+ +G G E +
Sbjct: 281 AEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAA 340
Query: 371 -----GMPAVFTGMLLGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSG-IPVVGVRA 423
G V G E LS +G D ++PS E GL L A+ G IPVV R
Sbjct: 341 ASRHHGRVGVAIGY--NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-ART 397
Query: 424 GGIPDIIPEDQDGKI------GYLFNPGDLD 448
GG+ D + + + G F+P LD
Sbjct: 398 GGLADTVIDANHAALASKAATGVQFSPVTLD 428
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 29/181 (16%)
Query: 293 IWKKGVDSESFHPRFRSSEMRWRLSN----------GEPDKPLIVHVGRLGVEKSLDFLK 342
+W D H + ++ ++ R N + PL + RL +K +D
Sbjct: 252 VWNPATD-HLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLXA 310
Query: 343 RVMDRLPE--ARIAFIGDGPYREELEKM-----FTGMPAVFTGMLLGEELSQAYASG-DV 394
+D + R+ +G G E + G V G E LS +G D
Sbjct: 311 EAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY--NEPLSHLXQAGCDA 368
Query: 395 FVMPSESETLGLVVLEAMSSG-IPVVGVRAGGIPDIIPEDQDGKI------GYLFNPGDL 447
++PS E GL L A+ G IPVV R GG+ D + + + G F+P L
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVV-ARTGGLADTVIDANHAALASKAATGVQFSPVTL 427
Query: 448 D 448
D
Sbjct: 428 D 428
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 324 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 380
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 381 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 432
E S G DV ++PS E GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 324 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 380
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 381 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 432
E S G DV ++PS E GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 324 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 380
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 381 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 432
E S G DV ++PS GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|1JBY|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At Low Ph
pdb|1JBZ|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At High Ph
Length = 236
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y SG+V++M + +
Sbjct: 137 HKLEYNYNSGNVYIMADKQKN 157
>pdb|2YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
Length = 236
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y SG+V++M + +
Sbjct: 137 HKLEYNYNSGNVYIMADKQKN 157
>pdb|2FWQ|A Chain A, Reduced Enolate Chromophore Intermediate For Y66h Gfp
Variant
Length = 237
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + E I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYNSGNVYITADKQKN 158
>pdb|1YJ2|A Chain A, Cyclized, Non-Dehydrated Post-Translational Product For
S65a Y66s H148g Gfp Variant
Length = 237
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + E I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYNSGNVYITADKQKN 158
>pdb|2AWM|A Chain A, Gfp R96a Chromophore Maturation Recovery Mutant R96a Q183r
Length = 228
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++ + +
Sbjct: 138 HKLEYNYNSHNVYITADKQKN 158
>pdb|1QYF|A Chain A, Crystal Structure Of Matured Green Fluorescent Protein
R96a Variant
Length = 228
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++ + +
Sbjct: 138 HKLEYNYNSHNVYITADKQKN 158
>pdb|1QY3|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (B)
Length = 229
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 79 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 138
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++ + +
Sbjct: 139 HKLEYNYNSHNVYITADKQKN 159
>pdb|1QXT|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (A)
Length = 230
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|2HFC|A Chain A, Structure Of S65t Y66f R96a Gfp Variant In Precursor State
Length = 239
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|1YHI|A Chain A, Uncyclized Precursor Structure Of S65a Y66s R96a Gfp
Variant
Length = 239
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|1X67|A Chain A, Solution Structure Of The Cofilin Homology Domain Of
Hip-55 (Drebrin-Like Protein)
Length = 146
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 382 GEELSQAYASGDVFVMPSESET-LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY 440
G L +AY V V+ +S T L E S+ I V G GG+ +++ E GK+ Y
Sbjct: 16 GPALQEAY----VRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMY 71
Query: 441 LF 442
F
Sbjct: 72 AF 73
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 65 LRVNSEKSRKRLEGLVVRDSDNSRQSNMTIS------EVREDEVEAPLLDPEINENNSRP 118
++ N+EK+ + ++ L D N N E +D +E+ DPE ++N+SR
Sbjct: 45 VKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRS 104
Query: 119 RRIALFVE 126
+ LF++
Sbjct: 105 KTKCLFIQ 112
>pdb|2YE1|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise-Gl (K206a Mutant)
Length = 243
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYISGNVYITADKQKN 158
>pdb|2DUG|A Chain A, Crystal Structure Of A Green Fluorescent Protein S65tH148N
At Ph 5
pdb|2DUH|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148N AT PH 9.5
Length = 236
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVM--DRLPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSNNVYIMADKQKN 157
>pdb|3MY7|A Chain A, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|B Chain B, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|C Chain C, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|D Chain D, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
Length = 452
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 408 VLEAMSSGIPVVGVRAGGIPDIIPEDQD 435
V A SSG P +GV AG +P +I E D
Sbjct: 199 VKAAYSSGKPAIGVGAGNVPVVIDETAD 226
>pdb|3U8P|A Chain A, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|B Chain B, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|C Chain C, Cytochrome B562 Integral Fusion With Egfp
Length = 347
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 336 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 382
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 188 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 247
Query: 383 EELSQAYASGDVFVMPSESET 403
+L Y S +V++M + +
Sbjct: 248 HKLEYNYNSHNVYIMADKQKN 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,452,272
Number of Sequences: 62578
Number of extensions: 615674
Number of successful extensions: 1462
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 51
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)