Query 009759
Match_columns 526
No_of_seqs 542 out of 2074
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 16:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02871 UDP-sulfoquinovose:DA 100.0 1.9E-56 4.1E-61 461.1 48.0 407 115-524 55-464 (465)
2 PLN02939 transferase, transfer 100.0 6.7E-44 1.5E-48 372.6 41.9 383 115-500 478-972 (977)
3 PRK10307 putative glycosyl tra 100.0 1.2E-43 2.7E-48 361.5 37.8 370 119-497 1-410 (412)
4 PRK00654 glgA glycogen synthas 100.0 1.4E-43 2.9E-48 364.7 36.9 371 119-497 1-465 (466)
5 PLN02316 synthase/transferase 100.0 5.7E-43 1.2E-47 372.6 41.1 363 115-496 584-1035(1036)
6 PRK14099 glycogen synthase; Pr 100.0 1.3E-42 2.7E-47 356.1 36.8 374 117-498 2-482 (485)
7 cd03796 GT1_PIG-A_like This fa 100.0 1.4E-42 3.1E-47 351.7 36.6 357 120-498 1-371 (398)
8 PRK14098 glycogen synthase; Pr 100.0 2.3E-42 5E-47 354.5 37.7 377 118-497 5-488 (489)
9 TIGR02095 glgA glycogen/starch 100.0 5.2E-42 1.1E-46 354.7 36.8 370 119-495 1-473 (473)
10 TIGR03449 mycothiol_MshA UDP-N 100.0 8.3E-42 1.8E-46 347.7 37.1 358 133-497 19-404 (405)
11 cd04962 GT1_like_5 This family 100.0 1.9E-41 4.1E-46 341.1 37.0 357 119-494 1-370 (371)
12 cd03814 GT1_like_2 This family 100.0 4.5E-41 9.8E-46 336.7 37.0 360 120-492 1-363 (364)
13 PRK15427 colanic acid biosynth 100.0 1.2E-40 2.5E-45 336.3 36.6 351 119-494 1-405 (406)
14 TIGR03088 stp2 sugar transfera 100.0 9.2E-41 2E-45 336.4 35.2 358 119-495 2-373 (374)
15 TIGR02472 sucr_P_syn_N sucrose 100.0 2E-40 4.4E-45 339.1 36.8 356 130-491 22-437 (439)
16 TIGR02149 glgA_Coryne glycogen 100.0 2.4E-40 5.1E-45 335.3 36.2 367 119-496 1-388 (388)
17 TIGR02468 sucrsPsyn_pln sucros 100.0 4.3E-40 9.3E-45 349.5 39.0 378 113-498 164-674 (1050)
18 cd03791 GT1_Glycogen_synthase_ 100.0 6.6E-40 1.4E-44 340.5 33.7 368 120-493 1-475 (476)
19 PLN02846 digalactosyldiacylgly 100.0 2.4E-39 5.2E-44 322.8 34.6 350 116-494 2-391 (462)
20 cd03800 GT1_Sucrose_synthase T 100.0 1.4E-38 3.1E-43 323.3 36.0 353 131-488 18-397 (398)
21 PRK15484 lipopolysaccharide 1, 100.0 3.4E-38 7.3E-43 316.6 36.6 343 120-495 4-378 (380)
22 cd04955 GT1_like_6 This family 100.0 5.9E-38 1.3E-42 314.7 38.1 351 120-493 1-363 (363)
23 cd05844 GT1_like_7 Glycosyltra 100.0 1.9E-38 4.1E-43 318.8 34.6 346 120-488 1-365 (367)
24 cd03817 GT1_UGDG_like This fam 100.0 3E-38 6.5E-43 317.0 36.0 362 120-494 1-373 (374)
25 cd03818 GT1_ExpC_like This fam 100.0 2.6E-38 5.7E-43 320.4 35.6 351 120-488 1-395 (396)
26 cd03795 GT1_like_4 This family 100.0 3.1E-38 6.8E-43 315.8 35.3 344 120-484 1-357 (357)
27 cd03799 GT1_amsK_like This is 100.0 3.1E-38 6.8E-43 315.6 34.9 339 120-487 1-355 (355)
28 TIGR02470 sucr_synth sucrose s 100.0 7.2E-38 1.6E-42 326.7 38.5 378 116-499 253-751 (784)
29 cd03805 GT1_ALG2_like This fam 100.0 1.3E-38 2.8E-43 323.0 31.8 357 119-487 1-392 (392)
30 PRK10125 putative glycosyl tra 100.0 9.4E-38 2E-42 313.9 34.0 350 119-495 1-405 (405)
31 cd03801 GT1_YqgM_like This fam 100.0 2.8E-37 6E-42 308.7 37.1 363 120-492 1-373 (374)
32 cd03809 GT1_mtfB_like This fam 100.0 6E-38 1.3E-42 314.4 31.0 355 120-488 1-364 (365)
33 cd03802 GT1_AviGT4_like This f 100.0 3.1E-37 6.6E-42 306.0 34.8 325 119-493 1-335 (335)
34 cd03825 GT1_wcfI_like This fam 100.0 3.6E-37 7.7E-42 309.1 35.5 332 119-494 1-364 (365)
35 PRK15179 Vi polysaccharide bio 100.0 2.3E-37 4.9E-42 323.9 35.1 364 116-493 278-692 (694)
36 cd03816 GT1_ALG1_like This fam 100.0 2.6E-37 5.6E-42 313.6 34.3 357 118-488 3-411 (415)
37 cd03823 GT1_ExpE7_like This fa 100.0 3.1E-37 6.8E-42 308.1 34.2 343 120-493 1-358 (359)
38 cd03798 GT1_wlbH_like This fam 100.0 7.2E-37 1.6E-41 306.6 36.1 358 121-494 1-376 (377)
39 cd03794 GT1_wbuB_like This fam 100.0 3.3E-37 7.2E-42 311.1 33.6 361 120-487 1-393 (394)
40 PRK09922 UDP-D-galactose:(gluc 100.0 3.2E-37 6.9E-42 308.2 32.0 341 119-496 1-357 (359)
41 cd04951 GT1_WbdM_like This fam 100.0 1.2E-36 2.7E-41 304.6 36.4 348 120-493 1-359 (360)
42 cd03821 GT1_Bme6_like This fam 100.0 8.7E-37 1.9E-41 306.4 35.3 357 120-488 1-374 (375)
43 cd03792 GT1_Trehalose_phosphor 100.0 3.7E-37 8E-42 309.6 31.9 342 120-494 1-371 (372)
44 TIGR03087 stp1 sugar transfera 100.0 1.7E-37 3.6E-42 314.5 29.5 354 121-493 1-395 (397)
45 cd03812 GT1_CapH_like This fam 100.0 9.3E-37 2E-41 305.4 30.2 337 120-475 1-346 (358)
46 cd03822 GT1_ecORF704_like This 100.0 8.3E-36 1.8E-40 299.0 37.0 343 120-492 1-365 (366)
47 cd03807 GT1_WbnK_like This fam 100.0 3.5E-36 7.6E-41 300.8 33.9 349 120-493 1-365 (365)
48 cd03820 GT1_amsD_like This fam 100.0 6.8E-36 1.5E-40 296.5 34.9 337 120-488 1-347 (348)
49 cd03813 GT1_like_3 This family 100.0 1.6E-36 3.4E-41 313.1 30.3 274 204-493 173-475 (475)
50 cd03808 GT1_cap1E_like This fa 100.0 1.2E-35 2.6E-40 296.0 35.4 344 120-488 1-358 (359)
51 cd03819 GT1_WavL_like This fam 100.0 3.1E-36 6.8E-41 301.2 31.2 325 132-482 8-354 (355)
52 PLN00142 sucrose synthase 100.0 7.1E-36 1.5E-40 311.7 34.1 378 116-499 277-774 (815)
53 PLN02949 transferase, transfer 100.0 5.1E-35 1.1E-39 296.8 38.0 365 114-498 29-460 (463)
54 PRK15490 Vi polysaccharide bio 100.0 2.3E-35 4.9E-40 294.6 33.9 291 192-494 268-575 (578)
55 KOG1111 N-acetylglucosaminyltr 100.0 7.8E-37 1.7E-41 279.9 20.2 380 119-522 1-410 (426)
56 PLN02501 digalactosyldiacylgly 100.0 3.3E-35 7.1E-40 295.9 32.7 350 115-489 319-705 (794)
57 cd03811 GT1_WabH_like This fam 100.0 5.1E-35 1.1E-39 290.6 32.2 340 120-479 1-352 (353)
58 cd03806 GT1_ALG11_like This fa 100.0 1.5E-34 3.3E-39 293.0 31.9 343 121-485 3-418 (419)
59 cd03804 GT1_wbaZ_like This fam 100.0 2.3E-34 5E-39 287.2 29.8 334 120-487 1-350 (351)
60 cd04946 GT1_AmsK_like This fam 100.0 1.9E-32 4.1E-37 277.4 35.0 266 203-488 126-406 (407)
61 PLN02275 transferase, transfer 100.0 2.7E-32 6E-37 273.1 31.9 318 119-458 5-371 (371)
62 TIGR02918 accessory Sec system 100.0 1.6E-32 3.5E-37 281.2 29.0 280 193-494 200-499 (500)
63 COG0297 GlgA Glycogen synthase 100.0 4.2E-31 9.1E-36 263.6 31.5 377 119-498 1-481 (487)
64 PHA01630 putative group 1 glyc 100.0 9.5E-31 2.1E-35 255.2 31.5 238 225-494 66-330 (331)
65 cd04949 GT1_gtfA_like This fam 100.0 3.8E-30 8.2E-35 259.0 26.0 266 203-487 98-372 (372)
66 PRK00726 murG undecaprenyldiph 100.0 2.5E-29 5.3E-34 251.4 29.9 328 119-488 2-352 (357)
67 PHA01633 putative glycosyl tra 100.0 1.7E-28 3.6E-33 236.1 31.8 305 119-488 1-334 (335)
68 cd03785 GT1_MurG MurG is an N- 100.0 3.1E-28 6.7E-33 243.0 29.7 317 132-485 8-349 (350)
69 cd04950 GT1_like_1 Glycosyltra 100.0 6.1E-28 1.3E-32 242.0 29.3 334 131-489 13-367 (373)
70 PRK13609 diacylglycerol glucos 100.0 4.1E-28 8.9E-33 244.5 28.1 342 116-493 2-370 (380)
71 TIGR01133 murG undecaprenyldip 100.0 2.8E-27 6.1E-32 235.9 28.4 324 119-485 1-346 (348)
72 PLN02605 monogalactosyldiacylg 100.0 1.5E-26 3.2E-31 232.7 27.7 265 194-488 90-376 (382)
73 cd03788 GT1_TPS Trehalose-6-Ph 100.0 2.7E-27 5.9E-32 241.8 19.5 276 204-491 131-459 (460)
74 cd03793 GT1_Glycogen_synthase_ 100.0 3.6E-26 7.8E-31 228.8 26.6 289 203-497 147-589 (590)
75 PRK13608 diacylglycerol glucos 100.0 8.2E-26 1.8E-30 227.5 29.0 343 117-496 4-373 (391)
76 TIGR02400 trehalose_OtsA alpha 99.9 1.8E-26 3.8E-31 233.7 23.4 273 204-491 127-454 (456)
77 PRK05749 3-deoxy-D-manno-octul 99.9 1.1E-25 2.3E-30 230.3 26.3 334 134-496 60-421 (425)
78 PRK09814 beta-1,6-galactofuran 99.9 2.9E-24 6.3E-29 211.6 29.9 308 119-486 1-324 (333)
79 PLN03063 alpha,alpha-trehalose 99.9 2.6E-24 5.6E-29 231.0 23.7 282 205-497 148-480 (797)
80 cd01635 Glycosyltransferase_GT 99.9 2.8E-23 6.1E-28 193.5 24.7 220 121-442 1-229 (229)
81 PRK14501 putative bifunctional 99.9 2.4E-23 5.3E-28 224.4 19.5 280 205-497 134-465 (726)
82 PF00534 Glycos_transf_1: Glyc 99.9 2.7E-23 5.9E-28 185.1 15.2 152 320-474 12-172 (172)
83 PRK00025 lpxB lipid-A-disaccha 99.9 5.5E-22 1.2E-26 200.1 25.9 333 118-488 1-368 (380)
84 TIGR00236 wecB UDP-N-acetylglu 99.9 4E-22 8.6E-27 199.8 23.3 343 119-488 1-362 (365)
85 KOG0853 Glycosyltransferase [C 99.9 1.7E-21 3.7E-26 191.6 24.1 363 118-494 34-467 (495)
86 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 3.2E-21 7E-26 193.4 24.1 322 120-467 1-344 (363)
87 KOG2941 Beta-1,4-mannosyltrans 99.9 4.7E-19 1E-23 162.4 30.7 360 114-488 8-436 (444)
88 KOG1387 Glycosyltransferase [C 99.9 7.5E-20 1.6E-24 167.4 25.3 360 119-497 44-461 (465)
89 TIGR02398 gluc_glyc_Psyn gluco 99.9 2.7E-20 5.8E-25 187.3 22.8 275 205-494 133-483 (487)
90 COG0438 RfaG Glycosyltransfera 99.9 2.4E-18 5.2E-23 170.6 36.6 346 130-496 11-378 (381)
91 TIGR02094 more_P_ylases alpha- 99.8 2.2E-18 4.7E-23 178.8 25.9 293 196-492 151-599 (601)
92 PLN03064 alpha,alpha-trehalose 99.8 1.1E-18 2.4E-23 186.5 21.8 277 205-495 232-563 (934)
93 TIGR00215 lpxB lipid-A-disacch 99.8 4.3E-17 9.3E-22 163.3 25.4 323 120-478 7-369 (385)
94 COG0707 MurG UDP-N-acetylgluco 99.8 4.9E-16 1.1E-20 151.5 29.3 327 119-487 1-351 (357)
95 PRK12446 undecaprenyldiphospho 99.8 1.6E-15 3.5E-20 149.8 30.2 322 119-488 1-346 (352)
96 PF13692 Glyco_trans_1_4: Glyc 99.7 2E-17 4.4E-22 140.8 9.2 127 324-460 3-135 (135)
97 cd04299 GT1_Glycogen_Phosphory 99.7 6.6E-15 1.4E-19 155.6 26.8 297 203-503 247-699 (778)
98 PF13439 Glyco_transf_4: Glyco 99.7 2.7E-16 5.8E-21 140.3 12.1 175 121-303 1-176 (177)
99 TIGR03713 acc_sec_asp1 accesso 99.7 3.6E-15 7.8E-20 153.2 20.5 204 262-488 269-516 (519)
100 PF13579 Glyco_trans_4_4: Glyc 99.6 2.4E-15 5.2E-20 131.7 10.4 158 134-297 1-160 (160)
101 PF05693 Glycogen_syn: Glycoge 99.6 3E-13 6.5E-18 135.5 21.2 294 206-502 145-589 (633)
102 PF00982 Glyco_transf_20: Glyc 99.6 1.1E-13 2.4E-18 140.1 17.9 275 204-491 141-472 (474)
103 TIGR03492 conserved hypothetic 99.6 3.7E-12 8E-17 127.8 28.8 323 135-487 8-392 (396)
104 PF13528 Glyco_trans_1_3: Glyc 99.6 8E-13 1.7E-17 129.9 23.7 294 119-457 1-317 (318)
105 PRK10117 trehalose-6-phosphate 99.6 3.7E-13 8E-18 134.4 21.0 277 205-492 124-452 (474)
106 TIGR03568 NeuC_NnaA UDP-N-acet 99.6 4.8E-12 1E-16 125.8 28.4 336 119-488 1-362 (365)
107 TIGR02919 accessory Sec system 99.5 3.4E-12 7.3E-17 128.2 24.0 193 264-481 238-432 (438)
108 COG0380 OtsA Trehalose-6-phosp 99.5 9.1E-12 2E-16 123.8 23.9 279 204-493 147-479 (486)
109 PLN02205 alpha,alpha-trehalose 99.5 4.9E-12 1.1E-16 136.7 23.9 276 206-494 203-552 (854)
110 TIGR03590 PseG pseudaminic aci 99.5 9.7E-12 2.1E-16 118.9 22.3 265 120-424 1-269 (279)
111 PF13524 Glyco_trans_1_2: Glyc 99.5 3.3E-13 7.2E-18 106.2 9.5 90 394-488 1-91 (92)
112 cd03784 GT1_Gtf_like This fami 99.4 2E-11 4.4E-16 124.1 23.2 151 321-487 238-398 (401)
113 COG1519 KdtA 3-deoxy-D-manno-o 99.4 5.4E-10 1.2E-14 107.8 27.8 311 135-476 60-402 (419)
114 PF04007 DUF354: Protein of un 99.4 1.1E-10 2.3E-15 112.8 22.3 295 119-458 1-308 (335)
115 TIGR00661 MJ1255 conserved hyp 99.3 2.2E-10 4.8E-15 112.5 22.8 292 120-461 1-315 (321)
116 COG0381 WecB UDP-N-acetylgluco 99.3 1E-09 2.3E-14 105.0 26.2 345 117-487 2-368 (383)
117 COG4641 Uncharacterized protei 99.3 3.6E-10 7.8E-15 107.1 22.2 337 130-498 10-365 (373)
118 PF02684 LpxB: Lipid-A-disacch 99.3 3.3E-10 7.2E-15 110.9 22.1 309 135-470 9-350 (373)
119 COG0763 LpxB Lipid A disacchar 99.3 7.7E-10 1.7E-14 105.6 21.7 324 119-474 2-358 (381)
120 PRK01021 lpxB lipid-A-disaccha 99.3 1.3E-09 2.9E-14 111.0 23.6 324 119-476 227-587 (608)
121 TIGR01426 MGT glycosyltransfer 99.2 2.4E-09 5.3E-14 108.4 24.0 155 322-488 225-387 (392)
122 PF09314 DUF1972: Domain of un 99.2 3.9E-10 8.5E-15 98.5 15.4 176 119-299 2-185 (185)
123 PF13477 Glyco_trans_4_2: Glyc 99.2 6.1E-10 1.3E-14 95.1 13.1 136 120-273 1-139 (139)
124 COG1819 Glycosyl transferases, 99.1 3.4E-09 7.3E-14 106.5 19.6 156 322-492 237-399 (406)
125 PF02350 Epimerase_2: UDP-N-ac 99.1 1.3E-09 2.9E-14 107.2 15.6 276 192-488 55-342 (346)
126 PHA03392 egt ecdysteroid UDP-g 99.1 4.5E-08 9.7E-13 101.3 26.5 138 323-475 297-447 (507)
127 COG1817 Uncharacterized protei 99.1 2.5E-08 5.4E-13 91.7 20.5 300 119-463 1-317 (346)
128 PF08323 Glyco_transf_5: Starc 99.1 6.3E-10 1.4E-14 104.1 9.7 164 120-283 1-233 (245)
129 COG3980 spsG Spore coat polysa 99.1 1.5E-08 3.3E-13 91.8 17.6 297 119-472 1-305 (318)
130 PRK10017 colanic acid biosynth 98.8 1.9E-05 4.1E-10 79.7 33.1 321 119-467 1-399 (426)
131 COG3914 Spy Predicted O-linked 98.8 2.2E-06 4.8E-11 85.6 24.7 346 113-499 254-618 (620)
132 PLN03007 UDP-glucosyltransfera 98.8 2.7E-05 5.9E-10 80.5 32.1 133 321-461 284-441 (482)
133 PRK14089 ipid-A-disaccharide s 98.7 1.2E-06 2.6E-11 85.6 18.0 248 119-421 2-260 (347)
134 PLN02448 UDP-glycosyltransfera 98.6 0.00013 2.9E-09 75.0 32.4 337 116-473 8-429 (459)
135 PF04464 Glyphos_transf: CDP-G 98.6 2.5E-06 5.3E-11 85.7 19.2 270 204-491 78-367 (369)
136 PLN02208 glycosyltransferase f 98.6 0.00019 4.1E-09 73.1 32.9 339 118-474 4-416 (442)
137 PLN02670 transferase, transfer 98.6 0.00014 3E-09 74.5 31.8 163 321-493 277-465 (472)
138 PLN02764 glycosyltransferase f 98.6 0.00018 4E-09 73.0 32.0 343 116-475 3-423 (453)
139 PF13844 Glyco_transf_41: Glyc 98.6 2.4E-06 5.1E-11 85.7 16.2 178 313-495 276-467 (468)
140 KOG3742 Glycogen synthase [Car 98.5 1.9E-07 4.1E-12 89.5 6.0 104 384-488 493-607 (692)
141 COG4671 Predicted glycosyl tra 98.5 4.9E-05 1.1E-09 71.7 21.6 324 115-460 6-365 (400)
142 PLN02210 UDP-glucosyl transfer 98.5 0.0012 2.7E-08 67.6 33.6 352 116-488 6-450 (456)
143 PRK02797 4-alpha-L-fucosyltran 98.5 4.7E-05 1E-09 71.3 20.6 272 193-496 28-318 (322)
144 PLN02562 UDP-glycosyltransfera 98.4 0.00099 2.1E-08 68.2 32.1 137 322-468 273-421 (448)
145 PLN02410 UDP-glucoronosyl/UDP- 98.4 0.0012 2.6E-08 67.5 32.0 131 321-462 263-412 (451)
146 PLN00414 glycosyltransferase f 98.4 0.00047 1E-08 70.4 28.9 338 118-475 4-418 (446)
147 PF07429 Glyco_transf_56: 4-al 98.4 0.00046 9.9E-09 65.7 26.3 222 194-430 68-304 (360)
148 PLN02863 UDP-glucoronosyl/UDP- 98.4 0.0022 4.7E-08 66.1 32.8 160 322-490 283-468 (477)
149 PLN02173 UDP-glucosyl transfer 98.4 0.0025 5.3E-08 65.0 32.5 141 322-472 264-419 (449)
150 PF00201 UDPGT: UDP-glucoronos 98.3 1.3E-06 2.8E-11 91.6 8.5 132 321-468 275-417 (500)
151 PLN02992 coniferyl-alcohol glu 98.3 0.0061 1.3E-07 62.6 34.4 132 321-461 262-428 (481)
152 PLN02534 UDP-glycosyltransfera 98.1 0.018 3.8E-07 59.5 34.0 131 322-459 283-443 (491)
153 PF11440 AGT: DNA alpha-glucos 98.0 0.01 2.2E-07 54.4 25.6 299 134-460 1-353 (355)
154 PLN02152 indole-3-acetate beta 98.0 0.029 6.3E-07 57.4 31.4 131 322-461 261-418 (455)
155 PLN00164 glucosyltransferase; 98.0 0.034 7.3E-07 57.6 33.0 145 322-474 272-446 (480)
156 PLN03015 UDP-glucosyl transfer 97.9 0.038 8.3E-07 56.6 32.0 186 263-459 202-425 (470)
157 PF04101 Glyco_tran_28_C: Glyc 97.9 6.3E-07 1.4E-11 79.0 -4.3 110 351-470 32-154 (167)
158 COG3660 Predicted nucleoside-d 97.9 0.0075 1.6E-07 54.8 21.2 257 119-424 1-274 (329)
159 PLN02555 limonoid glucosyltran 97.8 0.058 1.3E-06 55.6 30.6 141 323-474 278-442 (480)
160 TIGR03609 S_layer_CsaB polysac 97.8 0.012 2.5E-07 57.2 23.8 247 131-422 9-276 (298)
161 PRK10916 ADP-heptose:LPS hepto 97.8 0.017 3.6E-07 57.5 25.3 95 322-421 180-286 (348)
162 COG0859 RfaF ADP-heptose:LPS h 97.7 0.0073 1.6E-07 59.5 21.7 266 118-422 1-277 (334)
163 TIGR02195 heptsyl_trn_II lipop 97.7 0.006 1.3E-07 60.3 20.7 95 322-421 174-276 (334)
164 cd03789 GT1_LPS_heptosyltransf 97.7 0.0053 1.1E-07 59.0 19.7 80 338-423 142-225 (279)
165 COG2327 WcaK Polysaccharide py 97.7 0.067 1.5E-06 52.5 26.6 313 119-465 1-356 (385)
166 PF11997 DUF3492: Domain of un 97.6 0.00052 1.1E-08 64.8 10.6 81 204-284 172-264 (268)
167 PF15024 Glyco_transf_18: Glyc 97.4 0.0037 8.1E-08 63.5 14.7 153 324-493 278-454 (559)
168 PRK10422 lipopolysaccharide co 97.4 0.025 5.4E-07 56.3 20.8 96 322-422 183-288 (352)
169 KOG1050 Trehalose-6-phosphate 97.4 0.0076 1.6E-07 64.4 17.6 255 204-468 140-448 (732)
170 PF12000 Glyco_trans_4_3: Gkyc 97.4 0.00068 1.5E-08 58.8 8.1 148 149-303 1-170 (171)
171 PLN03004 UDP-glycosyltransfera 97.4 0.0027 6E-08 64.7 13.7 138 321-465 269-429 (451)
172 PLN02554 UDP-glycosyltransfera 97.3 0.018 3.9E-07 59.7 19.0 135 322-466 274-447 (481)
173 TIGR02193 heptsyl_trn_I lipopo 97.2 0.1 2.2E-06 51.1 22.1 97 321-422 178-280 (319)
174 TIGR02201 heptsyl_trn_III lipo 97.2 0.028 6.2E-07 55.7 17.7 96 322-422 181-286 (344)
175 PRK10964 ADP-heptose:LPS hepto 97.1 0.34 7.4E-06 47.5 24.8 96 323-423 179-280 (322)
176 PF06258 Mito_fiss_Elm1: Mitoc 97.1 0.089 1.9E-06 50.9 19.5 239 135-425 2-259 (311)
177 PF08660 Alg14: Oligosaccharid 97.1 0.0072 1.6E-07 52.8 10.8 134 134-280 8-161 (170)
178 PF00862 Sucrose_synth: Sucros 97.0 0.0019 4E-08 64.5 7.6 187 119-306 273-530 (550)
179 TIGR00715 precor6x_red precorr 97.0 0.32 6.9E-06 45.7 23.4 243 119-458 1-255 (256)
180 PF04413 Glycos_transf_N: 3-De 97.0 0.0076 1.6E-07 53.7 10.5 147 134-296 31-179 (186)
181 PLN02207 UDP-glycosyltransfera 97.0 0.088 1.9E-06 54.1 19.4 188 263-459 209-425 (468)
182 PLN02167 UDP-glycosyltransfera 96.8 0.064 1.4E-06 55.5 16.6 142 322-475 280-453 (475)
183 PF12038 DUF3524: Domain of un 96.6 0.058 1.3E-06 46.0 12.1 135 119-283 1-137 (168)
184 PF04230 PS_pyruv_trans: Polys 96.5 0.7 1.5E-05 43.7 21.2 181 218-423 89-284 (286)
185 PF06925 MGDG_synth: Monogalac 96.5 0.014 3E-07 51.3 8.3 87 192-295 77-166 (169)
186 PF00343 Phosphorylase: Carboh 96.4 0.24 5.1E-06 52.7 17.6 182 262-444 328-596 (713)
187 PF05159 Capsule_synth: Capsul 96.2 0.39 8.4E-06 45.8 17.1 98 320-424 114-227 (269)
188 PF01075 Glyco_transf_9: Glyco 96.2 0.31 6.7E-06 45.7 16.3 96 321-421 104-208 (247)
189 COG0058 GlgP Glucan phosphoryl 96.1 0.087 1.9E-06 56.0 12.7 123 320-445 484-631 (750)
190 PRK14986 glycogen phosphorylas 95.9 0.085 1.8E-06 56.8 12.1 122 320-444 540-695 (815)
191 PF10933 DUF2827: Protein of u 95.8 2.1 4.5E-05 41.6 21.4 313 132-483 16-353 (364)
192 KOG4626 O-linked N-acetylgluco 95.7 1.4 3E-05 45.6 18.5 178 320-500 756-946 (966)
193 PF08288 PIGA: PIGA (GPI ancho 95.3 0.044 9.5E-07 41.0 5.1 54 186-239 32-86 (90)
194 cd04300 GT1_Glycogen_Phosphory 95.3 0.17 3.7E-06 54.6 11.6 122 320-444 527-682 (797)
195 PRK14985 maltodextrin phosphor 95.2 0.071 1.5E-06 57.2 8.4 122 320-444 526-681 (798)
196 TIGR02093 P_ylase glycogen/sta 94.9 0.11 2.4E-06 55.8 8.6 122 320-444 524-679 (794)
197 COG1887 TagB Putative glycosyl 94.0 3.4 7.3E-05 41.5 16.6 221 262-491 145-384 (388)
198 KOG1192 UDP-glucuronosyl and U 93.8 1.1 2.4E-05 46.9 13.6 142 323-472 278-434 (496)
199 PF03016 Exostosin: Exostosin 92.9 0.46 1E-05 46.0 8.5 70 383-455 228-300 (302)
200 PF10087 DUF2325: Uncharacteri 92.1 0.34 7.3E-06 38.0 5.1 77 353-429 2-89 (97)
201 PF00551 Formyl_trans_N: Formy 90.5 1 2.3E-05 39.9 7.2 87 119-214 1-89 (181)
202 KOG3349 Predicted glycosyltran 89.5 2.6 5.7E-05 35.3 8.0 90 324-421 5-106 (170)
203 PF01113 DapB_N: Dihydrodipico 89.0 0.48 1E-05 39.1 3.6 45 383-427 59-103 (124)
204 PF02951 GSH-S_N: Prokaryotic 88.1 0.82 1.8E-05 37.2 4.3 41 119-161 1-41 (119)
205 COG2910 Putative NADH-flavin r 87.9 1.8 3.9E-05 37.8 6.3 40 119-167 1-40 (211)
206 COG0373 HemA Glutamyl-tRNA red 87.6 23 0.00049 35.7 14.8 122 322-451 177-301 (414)
207 PF10087 DUF2325: Uncharacteri 86.3 7.5 0.00016 30.3 8.8 73 134-234 6-81 (97)
208 COG0569 TrkA K+ transport syst 85.4 11 0.00024 34.7 10.8 129 119-285 1-133 (225)
209 PF02844 GARS_N: Phosphoribosy 85.3 4.6 0.0001 31.6 6.9 89 119-232 1-90 (100)
210 PRK05647 purN phosphoribosylgl 85.2 3 6.5E-05 37.6 6.7 86 119-213 2-89 (200)
211 PRK06849 hypothetical protein; 84.6 2 4.4E-05 43.3 6.1 84 117-214 3-86 (389)
212 PF02571 CbiJ: Precorrin-6x re 84.5 36 0.00077 31.9 21.0 220 119-427 1-231 (249)
213 TIGR00639 PurN phosphoribosylg 84.3 5.4 0.00012 35.6 7.9 87 119-214 1-89 (190)
214 COG2120 Uncharacterized protei 83.8 7.6 0.00016 36.1 9.0 94 115-213 7-118 (237)
215 PRK01372 ddl D-alanine--D-alan 83.7 6.6 0.00014 38.0 9.1 43 117-160 3-45 (304)
216 PF12996 DUF3880: DUF based on 83.7 2 4.3E-05 32.1 4.1 64 261-333 14-77 (79)
217 PRK13789 phosphoribosylamine-- 83.0 6.7 0.00014 40.1 9.0 93 117-232 3-96 (426)
218 PF04321 RmlD_sub_bind: RmlD s 82.8 2.2 4.8E-05 41.0 5.2 58 119-211 1-58 (286)
219 PF03033 Glyco_transf_28: Glyc 82.7 1.9 4.2E-05 36.0 4.3 28 134-161 9-36 (139)
220 PRK06395 phosphoribosylamine-- 82.2 10 0.00022 38.8 10.1 92 118-232 2-93 (435)
221 PF01012 ETF: Electron transfe 82.2 13 0.00028 32.2 9.4 114 120-238 1-124 (164)
222 PF01975 SurE: Survival protei 80.8 2.7 5.8E-05 37.7 4.6 38 119-162 1-38 (196)
223 PRK00207 sulfur transfer compl 80.2 3.6 7.9E-05 34.0 4.9 42 119-162 1-43 (128)
224 PRK13011 formyltetrahydrofolat 79.7 8.2 0.00018 36.9 7.8 87 115-213 86-174 (286)
225 PRK09288 purT phosphoribosylgl 79.6 11 0.00024 38.1 9.3 77 114-213 8-84 (395)
226 COG0496 SurE Predicted acid ph 79.3 11 0.00025 34.9 8.2 111 119-237 1-126 (252)
227 TIGR03646 YtoQ_fam YtoQ family 79.2 9.4 0.0002 31.1 6.6 70 386-458 70-143 (144)
228 COG1087 GalE UDP-glucose 4-epi 78.9 6.8 0.00015 37.2 6.7 66 134-210 7-73 (329)
229 PRK00676 hemA glutamyl-tRNA re 78.6 63 0.0014 31.7 13.5 138 346-496 170-320 (338)
230 PRK14569 D-alanyl-alanine synt 78.3 18 0.0004 34.8 10.0 40 118-158 3-42 (296)
231 PRK00994 F420-dependent methyl 77.5 54 0.0012 29.9 11.5 102 326-446 7-118 (277)
232 COG1927 Mtd Coenzyme F420-depe 77.2 53 0.0012 29.2 12.1 102 325-443 6-115 (277)
233 KOG1021 Acetylglucosaminyltran 76.5 11 0.00023 39.1 8.1 93 383-481 335-433 (464)
234 PLN02778 3,5-epimerase/4-reduc 76.4 11 0.00023 36.5 7.8 33 115-156 6-38 (298)
235 TIGR00877 purD phosphoribosyla 76.0 13 0.00027 38.0 8.6 92 119-232 1-92 (423)
236 PLN00016 RNA-binding protein; 75.5 16 0.00035 36.6 9.1 42 115-161 49-90 (378)
237 COG2099 CobK Precorrin-6x redu 75.4 70 0.0015 29.7 22.8 99 118-238 2-103 (257)
238 PRK02122 glucosamine-6-phospha 75.0 21 0.00046 38.5 10.1 43 115-162 366-408 (652)
239 PRK13940 glutamyl-tRNA reducta 75.0 78 0.0017 32.2 13.7 98 323-430 181-279 (414)
240 PRK06027 purU formyltetrahydro 74.8 7.7 0.00017 37.2 6.1 87 115-213 86-174 (286)
241 PF02310 B12-binding: B12 bind 73.8 36 0.00078 27.4 9.3 45 138-212 15-59 (121)
242 PRK12815 carB carbamoyl phosph 73.7 26 0.00056 40.6 11.0 103 117-233 554-659 (1068)
243 PRK05784 phosphoribosylamine-- 73.2 32 0.00069 35.8 10.6 95 119-232 1-97 (486)
244 cd01715 ETF_alpha The electron 72.8 18 0.00038 31.5 7.5 111 120-238 1-117 (168)
245 COG0052 RpsB Ribosomal protein 72.6 15 0.00032 33.8 6.9 33 205-238 157-189 (252)
246 cd01965 Nitrogenase_MoFe_beta_ 72.4 17 0.00038 37.1 8.5 96 118-233 299-394 (428)
247 TIGR01369 CPSaseII_lrg carbamo 72.3 25 0.00054 40.6 10.5 104 117-233 553-658 (1050)
248 TIGR00655 PurU formyltetrahydr 71.7 19 0.00042 34.3 7.9 86 116-213 82-169 (280)
249 PLN02735 carbamoyl-phosphate s 71.6 26 0.00057 40.5 10.4 84 114-211 19-105 (1102)
250 COG0223 Fmt Methionyl-tRNA for 71.5 9.3 0.0002 36.7 5.7 83 118-214 1-89 (307)
251 COG4370 Uncharacterized protei 71.3 9.9 0.00021 36.0 5.6 206 261-485 174-405 (412)
252 PRK05562 precorrin-2 dehydroge 71.3 84 0.0018 28.8 12.8 122 350-476 48-178 (223)
253 COG2204 AtoC Response regulato 71.2 35 0.00077 35.0 10.0 112 352-463 6-125 (464)
254 TIGR00460 fmt methionyl-tRNA f 71.0 21 0.00045 34.8 8.3 33 119-161 1-33 (313)
255 cd01985 ETF The electron trans 70.2 15 0.00032 32.4 6.6 100 135-238 19-125 (181)
256 COG1703 ArgK Putative periplas 70.2 1.1E+02 0.0023 29.5 13.4 128 133-274 61-199 (323)
257 PRK08057 cobalt-precorrin-6x r 70.1 96 0.0021 29.0 25.1 98 118-238 2-102 (248)
258 PF02441 Flavoprotein: Flavopr 69.8 8.8 0.00019 31.8 4.7 37 119-161 1-37 (129)
259 PF00389 2-Hacid_dh: D-isomer 69.2 64 0.0014 26.6 13.4 81 372-454 19-101 (133)
260 PRK08305 spoVFB dipicolinate s 69.2 13 0.00027 33.3 5.7 38 117-161 4-43 (196)
261 PRK06988 putative formyltransf 69.2 28 0.00061 33.8 8.7 83 118-213 2-86 (312)
262 PRK13849 putative crown gall t 69.1 39 0.00085 31.2 9.3 39 119-162 1-41 (231)
263 PF03358 FMN_red: NADPH-depend 69.1 14 0.00029 31.5 5.9 41 119-161 1-41 (152)
264 PF05686 Glyco_transf_90: Glyc 69.1 28 0.0006 35.2 8.9 91 403-497 225-320 (395)
265 COG1091 RfbD dTDP-4-dehydrorha 68.9 11 0.00024 35.8 5.6 57 119-211 1-57 (281)
266 PLN02695 GDP-D-mannose-3',5'-e 68.8 9.2 0.0002 38.3 5.5 39 113-160 16-54 (370)
267 PRK13932 stationary phase surv 68.2 10 0.00022 35.5 5.1 41 115-162 2-42 (257)
268 PF01408 GFO_IDH_MocA: Oxidore 68.1 17 0.00037 29.3 6.1 39 195-233 53-91 (120)
269 PRK13010 purU formyltetrahydro 68.0 13 0.00028 35.7 5.9 87 115-213 90-178 (289)
270 PRK00005 fmt methionyl-tRNA fo 67.6 26 0.00057 34.0 8.2 82 119-213 1-87 (309)
271 COG1748 LYS9 Saccharopine dehy 67.6 24 0.00052 35.3 7.9 98 119-236 2-100 (389)
272 PRK05802 hypothetical protein; 67.3 18 0.00039 35.4 7.0 107 119-235 173-286 (320)
273 PRK09739 hypothetical protein; 67.3 47 0.001 29.8 9.3 41 118-161 3-44 (199)
274 cd01974 Nitrogenase_MoFe_beta 67.2 49 0.0011 33.9 10.5 98 118-233 303-400 (435)
275 TIGR01286 nifK nitrogenase mol 67.1 26 0.00057 36.7 8.5 96 118-232 363-459 (515)
276 TIGR01285 nifN nitrogenase mol 66.9 42 0.0009 34.4 9.8 85 118-232 311-395 (432)
277 COG4635 HemG Flavodoxin [Energ 66.7 11 0.00024 32.1 4.4 39 119-161 1-39 (175)
278 PRK11070 ssDNA exonuclease Rec 66.6 59 0.0013 34.6 11.0 93 117-238 68-161 (575)
279 PRK05447 1-deoxy-D-xylulose 5- 66.6 41 0.0009 33.5 9.2 83 335-422 36-122 (385)
280 PRK14478 nitrogenase molybdenu 66.5 22 0.00047 37.0 7.8 92 118-232 324-415 (475)
281 PF00852 Glyco_transf_10: Glyc 66.4 31 0.00067 34.2 8.5 122 325-467 178-305 (349)
282 smart00672 CAP10 Putative lipo 66.3 75 0.0016 29.9 10.6 88 402-493 155-247 (256)
283 PRK02261 methylaspartate mutas 65.7 47 0.001 27.8 8.3 61 117-212 2-62 (137)
284 TIGR01283 nifE nitrogenase mol 65.6 29 0.00063 35.9 8.5 86 138-236 336-421 (456)
285 PRK14571 D-alanyl-alanine synt 65.3 42 0.00091 32.4 9.1 40 119-159 1-40 (299)
286 cd00363 PFK Phosphofructokinas 65.2 61 0.0013 32.0 10.2 116 119-237 1-130 (338)
287 COG0205 PfkA 6-phosphofructoki 65.2 63 0.0014 31.8 10.1 117 118-237 2-127 (347)
288 COG1553 DsrE Uncharacterized c 65.0 59 0.0013 26.5 8.1 79 119-212 1-80 (126)
289 PRK00346 surE 5'(3')-nucleotid 64.6 65 0.0014 30.1 9.7 37 119-162 1-37 (250)
290 COG0240 GpsA Glycerol-3-phosph 64.5 67 0.0014 31.3 9.9 140 119-283 2-144 (329)
291 COG1832 Predicted CoA-binding 64.5 47 0.001 27.6 7.6 38 118-161 16-53 (140)
292 PF13460 NAD_binding_10: NADH( 64.5 39 0.00084 29.5 8.1 89 134-237 5-98 (183)
293 PRK03202 6-phosphofructokinase 64.3 64 0.0014 31.5 10.0 115 119-237 2-125 (320)
294 PRK04148 hypothetical protein; 64.1 31 0.00068 28.7 6.7 92 117-236 16-110 (134)
295 PRK11519 tyrosine kinase; Prov 63.6 71 0.0015 35.3 11.4 41 118-161 525-565 (719)
296 PF10093 DUF2331: Uncharacteri 63.1 1E+02 0.0023 30.6 11.2 79 337-421 196-288 (374)
297 PRK04155 chaperone protein Hch 63.1 64 0.0014 30.9 9.6 44 118-161 49-100 (287)
298 PLN02653 GDP-mannose 4,6-dehyd 62.7 32 0.0007 33.7 8.0 27 134-160 13-39 (340)
299 PRK06718 precorrin-2 dehydroge 62.6 1.2E+02 0.0026 27.3 15.8 77 350-430 33-109 (202)
300 PRK05920 aromatic acid decarbo 62.6 17 0.00037 32.7 5.3 38 118-161 3-40 (204)
301 COG1089 Gmd GDP-D-mannose dehy 62.2 25 0.00055 33.2 6.3 83 119-210 2-84 (345)
302 PRK14071 6-phosphofructokinase 62.2 70 0.0015 31.8 10.0 116 118-236 4-139 (360)
303 PLN02285 methionyl-tRNA formyl 62.1 57 0.0012 32.1 9.3 19 195-213 84-102 (334)
304 TIGR03446 mycothiol_Mca mycoth 61.7 54 0.0012 31.3 8.8 20 193-212 110-129 (283)
305 PRK00048 dihydrodipicolinate r 61.5 23 0.0005 33.4 6.3 43 383-425 52-94 (257)
306 PF00532 Peripla_BP_1: Peripla 61.5 1.2E+02 0.0027 28.8 11.5 181 120-359 3-189 (279)
307 PF01210 NAD_Gly3P_dh_N: NAD-d 61.1 12 0.00026 32.2 4.0 74 137-216 8-81 (157)
308 cd03466 Nitrogenase_NifN_2 Nit 60.9 38 0.00083 34.7 8.3 96 118-233 300-395 (429)
309 PF01408 GFO_IDH_MocA: Oxidore 60.8 50 0.0011 26.4 7.6 89 325-422 2-93 (120)
310 PLN02712 arogenate dehydrogena 60.7 35 0.00076 37.1 8.3 38 113-160 47-84 (667)
311 PRK08177 short chain dehydroge 60.7 24 0.00051 32.2 6.2 28 135-162 9-36 (225)
312 PRK05472 redox-sensing transcr 60.6 1.1E+02 0.0024 27.7 10.6 40 383-422 136-177 (213)
313 PF09198 T4-Gluco-transf: Bact 60.3 34 0.00074 20.4 4.7 37 119-155 1-38 (38)
314 cd01968 Nitrogenase_NifE_I Nit 59.5 35 0.00076 34.7 7.7 93 118-233 287-379 (410)
315 PF00365 PFK: Phosphofructokin 59.2 62 0.0013 31.0 8.8 118 119-239 1-127 (282)
316 PRK09271 flavodoxin; Provision 59.2 20 0.00044 30.9 5.1 37 119-159 1-37 (160)
317 TIGR02853 spore_dpaA dipicolin 59.2 1.7E+02 0.0037 28.0 18.7 26 135-160 8-33 (287)
318 cd01020 TroA_b Metal binding p 59.1 89 0.0019 29.5 9.9 89 384-477 45-136 (264)
319 TIGR02026 BchE magnesium-proto 58.9 53 0.0012 34.4 9.1 48 139-213 24-72 (497)
320 TIGR01380 glut_syn glutathione 58.7 12 0.00026 36.5 4.0 41 119-161 1-41 (312)
321 COG0458 CarB Carbamoylphosphat 58.7 55 0.0012 32.6 8.4 99 115-234 2-106 (400)
322 PRK11914 diacylglycerol kinase 58.4 98 0.0021 29.9 10.4 41 119-161 9-49 (306)
323 TIGR01214 rmlD dTDP-4-dehydror 58.4 26 0.00056 33.3 6.3 26 134-159 6-31 (287)
324 PRK10840 transcriptional regul 58.2 1.4E+02 0.0031 26.8 11.2 107 350-459 3-125 (216)
325 PRK12767 carbamoyl phosphate s 58.2 52 0.0011 32.0 8.5 75 119-213 2-78 (326)
326 PF12738 PTCB-BRCT: twin BRCT 58.2 31 0.00067 24.1 5.1 60 352-422 2-62 (63)
327 PRK10675 UDP-galactose-4-epime 57.9 27 0.00059 34.2 6.5 32 119-159 1-32 (338)
328 PRK06249 2-dehydropantoate 2-r 57.9 19 0.00041 35.0 5.3 36 116-161 3-38 (313)
329 PRK05294 carB carbamoyl phosph 57.7 72 0.0016 37.0 10.6 81 117-211 6-89 (1066)
330 TIGR01915 npdG NADPH-dependent 57.6 17 0.00038 33.2 4.7 33 119-160 1-33 (219)
331 COG4088 Predicted nucleotide k 57.6 71 0.0015 28.9 8.0 39 119-161 1-39 (261)
332 PRK15181 Vi polysaccharide bio 57.6 37 0.0008 33.5 7.4 34 117-159 14-47 (348)
333 PRK11303 DNA-binding transcrip 57.5 1.9E+02 0.004 28.0 17.3 89 117-235 60-148 (328)
334 PF03401 TctC: Tripartite tric 57.4 98 0.0021 29.4 9.9 142 324-471 79-243 (274)
335 PLN02884 6-phosphofructokinase 57.1 81 0.0018 32.0 9.5 114 116-233 51-177 (411)
336 KOG3339 Predicted glycosyltran 57.0 42 0.00091 29.4 6.4 28 117-150 37-64 (211)
337 cd00764 Eukaryotic_PFK Phospho 57.0 1E+02 0.0023 33.9 10.9 119 115-236 386-516 (762)
338 PRK00170 azoreductase; Reviewe 56.9 45 0.00098 29.8 7.3 41 119-161 2-45 (201)
339 PLN03209 translocon at the inn 56.5 46 0.001 35.2 7.9 28 134-161 87-114 (576)
340 PRK12342 hypothetical protein; 56.5 67 0.0014 30.2 8.3 102 132-237 32-145 (254)
341 PRK12815 carB carbamoyl phosph 56.5 94 0.002 36.1 11.2 81 117-211 6-89 (1068)
342 TIGR01142 purT phosphoribosylg 56.3 57 0.0012 32.6 8.6 63 138-213 9-71 (380)
343 PRK00885 phosphoribosylamine-- 56.1 55 0.0012 33.4 8.5 89 119-232 1-90 (420)
344 PLN02166 dTDP-glucose 4,6-dehy 55.8 19 0.00041 37.0 5.0 36 115-159 117-152 (436)
345 COG1647 Esterase/lipase [Gener 55.8 91 0.002 28.5 8.5 91 134-237 25-116 (243)
346 cd00763 Bacterial_PFK Phosphof 55.4 1E+02 0.0022 30.0 9.7 112 119-234 1-121 (317)
347 TIGR01284 alt_nitrog_alph nitr 54.9 37 0.00079 35.1 7.0 94 118-234 325-419 (457)
348 TIGR02482 PFKA_ATP 6-phosphofr 54.8 1.2E+02 0.0025 29.4 9.9 113 120-235 1-122 (301)
349 CHL00194 ycf39 Ycf39; Provisio 54.8 19 0.00041 35.0 4.8 34 119-161 1-34 (317)
350 PRK06719 precorrin-2 dehydroge 54.6 21 0.00046 30.7 4.5 32 118-159 13-44 (157)
351 COG0299 PurN Folate-dependent 54.6 50 0.0011 29.3 6.6 107 119-237 1-109 (200)
352 PF03808 Glyco_tran_WecB: Glyc 54.5 34 0.00074 29.9 5.8 50 192-241 89-139 (172)
353 PF01113 DapB_N: Dihydrodipico 54.4 1.2E+02 0.0026 24.8 9.1 97 119-238 1-101 (124)
354 PRK03708 ppnK inorganic polyph 54.4 88 0.0019 29.8 9.0 36 119-158 1-36 (277)
355 PLN02527 aspartate carbamoyltr 54.2 2.1E+02 0.0046 27.7 13.2 133 257-400 88-227 (306)
356 TIGR00644 recJ single-stranded 54.2 1.2E+02 0.0026 32.2 10.7 92 117-237 53-144 (539)
357 PF02826 2-Hacid_dh_C: D-isome 54.1 51 0.0011 28.9 6.9 42 383-424 83-129 (178)
358 TIGR00036 dapB dihydrodipicoli 53.9 35 0.00076 32.3 6.2 42 384-425 61-102 (266)
359 PRK09987 dTDP-4-dehydrorhamnos 53.4 36 0.00077 32.8 6.4 30 119-158 1-30 (299)
360 PF00070 Pyr_redox: Pyridine n 53.4 32 0.0007 25.4 4.8 28 135-162 6-33 (80)
361 COG1058 CinA Predicted nucleot 53.2 69 0.0015 30.0 7.7 71 137-234 20-93 (255)
362 PF07355 GRDB: Glycine/sarcosi 52.6 1E+02 0.0022 30.2 8.9 48 193-240 69-123 (349)
363 PF03205 MobB: Molybdopterin g 52.5 71 0.0015 26.8 7.2 30 131-160 8-37 (140)
364 COG1255 Uncharacterized protei 52.2 1.2E+02 0.0026 24.5 7.6 80 139-237 24-104 (129)
365 COG0512 PabA Anthranilate/para 52.2 27 0.00059 30.9 4.6 33 119-160 2-34 (191)
366 TIGR02478 6PF1K_euk 6-phosphof 52.2 1.2E+02 0.0025 33.6 10.4 120 115-237 386-517 (745)
367 TIGR01369 CPSaseII_lrg carbamo 52.1 1.1E+02 0.0023 35.6 10.8 82 117-212 5-89 (1050)
368 PF02525 Flavodoxin_2: Flavodo 51.9 28 0.00061 31.2 5.0 41 119-161 1-43 (199)
369 PF04392 ABC_sub_bind: ABC tra 51.9 86 0.0019 30.1 8.7 145 262-422 56-218 (294)
370 cd00316 Oxidoreductase_nitroge 51.9 75 0.0016 32.0 8.7 85 138-235 289-373 (399)
371 cd01972 Nitrogenase_VnfE_like 51.8 1.1E+02 0.0023 31.3 9.8 104 117-234 292-399 (426)
372 PLN02331 phosphoribosylglycina 51.6 91 0.002 28.2 8.1 86 120-214 1-88 (207)
373 PRK07206 hypothetical protein; 51.5 1.1E+02 0.0024 31.0 10.0 80 141-230 15-95 (416)
374 TIGR01007 eps_fam capsular exo 51.5 34 0.00074 30.7 5.5 40 119-161 17-56 (204)
375 TIGR01205 D_ala_D_alaTIGR D-al 51.5 85 0.0018 30.4 8.8 41 120-161 1-41 (315)
376 PRK11891 aspartate carbamoyltr 51.3 2.9E+02 0.0062 28.3 12.7 133 257-400 174-317 (429)
377 COG0673 MviM Predicted dehydro 51.2 82 0.0018 30.8 8.7 91 324-421 4-97 (342)
378 PRK07178 pyruvate carboxylase 51.0 1.1E+02 0.0025 31.7 10.0 67 138-211 12-80 (472)
379 cd06354 PBP1_BmpA_PnrA_like Pe 50.6 1.2E+02 0.0026 28.4 9.4 88 120-235 1-88 (265)
380 COG4394 Uncharacterized protei 50.3 1.5E+02 0.0033 28.1 9.3 44 373-421 239-282 (370)
381 PF13380 CoA_binding_2: CoA bi 50.3 1.3E+02 0.0029 24.2 8.8 85 120-235 2-86 (116)
382 PRK14477 bifunctional nitrogen 50.2 57 0.0012 37.0 8.0 96 117-235 319-414 (917)
383 cd01080 NAD_bind_m-THF_DH_Cycl 50.2 57 0.0012 28.4 6.4 62 339-401 29-97 (168)
384 cd06315 PBP1_ABC_sugar_binding 50.1 1.4E+02 0.0031 28.0 10.0 85 120-234 2-87 (280)
385 PRK06756 flavodoxin; Provision 50.1 34 0.00075 28.9 5.1 37 119-159 2-38 (148)
386 PLN02927 antheraxanthin epoxid 50.1 41 0.0009 36.4 6.6 36 115-160 78-113 (668)
387 TIGR02622 CDP_4_6_dhtase CDP-g 50.1 44 0.00095 33.0 6.6 27 134-160 11-37 (349)
388 TIGR01761 thiaz-red thiazoliny 50.0 88 0.0019 30.9 8.4 91 322-422 2-97 (343)
389 PRK14106 murD UDP-N-acetylmura 49.8 37 0.00081 34.9 6.2 22 139-160 16-37 (450)
390 PRK05246 glutathione synthetas 49.5 20 0.00043 35.0 3.9 41 119-161 2-42 (316)
391 cd00027 BRCT Breast Cancer Sup 49.5 83 0.0018 21.6 6.5 62 351-422 2-65 (72)
392 COG0745 OmpR Response regulato 49.3 1.4E+02 0.0029 27.6 9.1 72 119-233 1-77 (229)
393 cd06274 PBP1_FruR Ligand bindi 48.9 2.2E+02 0.0048 26.3 17.3 73 137-237 15-87 (264)
394 PRK05234 mgsA methylglyoxal sy 48.8 1.4E+02 0.003 25.2 8.3 102 117-236 3-114 (142)
395 PRK05583 ribosomal protein L7A 48.7 74 0.0016 25.2 6.3 75 337-412 21-98 (104)
396 PF02670 DXP_reductoisom: 1-de 48.5 1.6E+02 0.0034 24.4 8.7 93 321-420 22-119 (129)
397 PRK08410 2-hydroxyacid dehydro 48.5 97 0.0021 30.1 8.5 44 383-426 188-236 (311)
398 cd06533 Glyco_transf_WecG_TagA 48.5 44 0.00095 29.2 5.5 45 195-240 90-136 (171)
399 cd00532 MGS-like MGS-like doma 48.3 87 0.0019 25.0 6.9 88 137-235 11-106 (112)
400 PF02585 PIG-L: GlcNAc-PI de-N 48.0 1.4E+02 0.003 24.3 8.3 59 136-214 51-110 (128)
401 cd02037 MRP-like MRP (Multiple 48.0 95 0.0021 26.8 7.7 28 135-162 12-39 (169)
402 TIGR03837 efp_adjacent_2 conse 47.8 2.7E+02 0.0059 27.6 11.1 82 334-421 191-286 (371)
403 PRK10360 DNA-binding transcrip 47.8 1.9E+02 0.004 25.1 10.8 105 352-459 3-117 (196)
404 PRK05294 carB carbamoyl phosph 47.8 1.5E+02 0.0033 34.4 11.2 104 116-232 552-657 (1066)
405 PRK08125 bifunctional UDP-gluc 47.7 91 0.002 34.0 9.0 31 119-159 1-31 (660)
406 TIGR01861 ANFD nitrogenase iro 47.7 73 0.0016 33.4 7.8 95 117-234 327-422 (513)
407 KOG2884 26S proteasome regulat 47.6 2E+02 0.0043 26.1 9.1 118 322-461 107-230 (259)
408 KOG1203 Predicted dehydrogenas 47.5 75 0.0016 32.0 7.4 42 115-165 76-117 (411)
409 smart00115 CASc Caspase, inter 47.5 48 0.001 30.9 5.9 46 114-159 3-51 (241)
410 PF10649 DUF2478: Protein of u 47.3 36 0.00078 29.3 4.6 38 385-422 86-130 (159)
411 PRK15029 arginine decarboxylas 47.3 98 0.0021 34.2 8.9 40 119-159 1-40 (755)
412 cd06318 PBP1_ABC_sugar_binding 47.3 1.1E+02 0.0025 28.6 8.8 87 120-236 1-88 (282)
413 TIGR01860 VNFD nitrogenase van 47.2 73 0.0016 33.0 7.7 93 117-232 326-419 (461)
414 PRK09620 hypothetical protein; 47.1 88 0.0019 28.9 7.5 22 138-159 30-51 (229)
415 cd00287 ribokinase_pfkB_like r 47.1 1.6E+02 0.0034 25.8 9.2 19 140-158 39-57 (196)
416 PRK07313 phosphopantothenoylcy 46.8 40 0.00086 29.8 5.0 37 119-161 2-38 (182)
417 TIGR02536 eut_hyp ethanolamine 46.8 96 0.0021 28.1 7.4 64 352-424 23-99 (207)
418 PLN00141 Tic62-NAD(P)-related 46.6 41 0.0009 31.3 5.5 36 117-161 16-51 (251)
419 cd01124 KaiC KaiC is a circadi 46.6 86 0.0019 27.4 7.3 31 132-162 8-38 (187)
420 PRK13931 stationary phase surv 46.1 2.1E+02 0.0046 27.0 9.9 110 119-236 1-129 (261)
421 COG1066 Sms Predicted ATP-depe 46.1 64 0.0014 32.4 6.6 97 135-237 105-219 (456)
422 cd01976 Nitrogenase_MoFe_alpha 46.1 78 0.0017 32.3 7.7 94 117-233 299-392 (421)
423 PLN02896 cinnamyl-alcohol dehy 46.0 37 0.00079 33.6 5.3 38 114-160 6-43 (353)
424 PRK06932 glycerate dehydrogena 46.0 1E+02 0.0022 30.0 8.2 44 383-426 189-237 (314)
425 cd01977 Nitrogenase_VFe_alpha 45.7 61 0.0013 33.0 6.9 95 117-234 287-382 (415)
426 PLN02657 3,8-divinyl protochlo 45.6 62 0.0013 32.6 6.9 39 114-161 56-94 (390)
427 PLN02828 formyltetrahydrofolat 45.5 1E+02 0.0023 29.1 7.8 40 115-162 67-108 (268)
428 KOG1111 N-acetylglucosaminyltr 45.5 3.1E+02 0.0067 27.2 10.8 230 119-419 88-322 (426)
429 PRK09273 hypothetical protein; 45.5 1.9E+02 0.0041 26.2 8.9 39 119-160 1-39 (211)
430 PF02374 ArsA_ATPase: Anion-tr 45.4 31 0.00068 33.4 4.5 38 119-162 1-40 (305)
431 PRK07454 short chain dehydroge 45.4 38 0.00082 31.1 5.0 35 118-160 5-39 (241)
432 PRK06179 short chain dehydroge 45.3 89 0.0019 29.2 7.7 27 135-161 12-38 (270)
433 PRK06222 ferredoxin-NADP(+) re 45.3 1.2E+02 0.0025 29.0 8.4 105 119-236 99-212 (281)
434 COG0771 MurD UDP-N-acetylmuram 45.1 59 0.0013 33.3 6.5 35 118-162 7-41 (448)
435 COG5017 Uncharacterized conser 45.1 1.7E+02 0.0037 24.5 7.7 67 353-430 34-101 (161)
436 PRK09841 cryptic autophosphory 45.1 2.5E+02 0.0053 31.2 11.8 42 117-161 529-570 (726)
437 PRK01077 cobyrinic acid a,c-di 45.1 1.1E+02 0.0023 31.7 8.6 109 119-236 3-122 (451)
438 COG0036 Rpe Pentose-5-phosphat 45.1 2.4E+02 0.0053 25.7 11.1 69 194-274 19-93 (220)
439 TIGR02990 ectoine_eutA ectoine 45.0 1.4E+02 0.003 27.8 8.4 89 118-234 120-212 (239)
440 PLN02206 UDP-glucuronate decar 44.8 34 0.00074 35.2 4.9 35 115-158 116-150 (442)
441 PF04244 DPRP: Deoxyribodipyri 44.8 1.2E+02 0.0026 27.8 7.9 76 138-237 49-126 (224)
442 COG0655 WrbA Multimeric flavod 44.5 1.4E+02 0.003 26.9 8.4 42 119-162 1-42 (207)
443 PRK10669 putative cation:proto 44.4 91 0.002 33.2 8.2 122 135-285 424-548 (558)
444 PF00289 CPSase_L_chain: Carba 44.4 66 0.0014 25.7 5.5 69 139-213 13-83 (110)
445 PF00072 Response_reg: Respons 44.4 1.5E+02 0.0032 22.9 9.4 91 362-455 11-112 (112)
446 PRK14072 6-phosphofructokinase 44.3 1.8E+02 0.0039 29.6 9.8 113 118-233 3-137 (416)
447 TIGR00087 surE 5'/3'-nucleotid 44.0 39 0.00085 31.5 4.7 37 119-162 1-37 (244)
448 cd02067 B12-binding B12 bindin 43.6 1.2E+02 0.0025 24.4 7.1 49 134-212 10-58 (119)
449 COG4567 Response regulator con 43.5 2.1E+02 0.0045 24.5 10.8 107 349-457 8-124 (182)
450 PRK10217 dTDP-glucose 4,6-dehy 43.3 84 0.0018 31.0 7.4 26 134-159 8-33 (355)
451 PF01993 MTD: methylene-5,6,7, 43.3 53 0.0011 30.1 5.1 114 326-458 6-127 (276)
452 cd06300 PBP1_ABC_sugar_binding 43.0 1.8E+02 0.0039 27.0 9.4 88 120-235 1-92 (272)
453 COG2804 PulE Type II secretory 42.9 2.9E+02 0.0063 28.7 10.9 103 121-239 260-363 (500)
454 TIGR02931 anfK_nitrog Fe-only 42.9 1.6E+02 0.0036 30.4 9.5 98 117-234 311-412 (461)
455 TIGR01754 flav_RNR ribonucleot 42.9 46 0.001 27.8 4.7 34 119-156 1-34 (140)
456 PF00148 Oxidored_nitro: Nitro 42.9 48 0.001 33.5 5.6 94 118-233 271-364 (398)
457 PRK08462 biotin carboxylase; V 42.8 1.8E+02 0.0038 29.9 9.9 88 139-232 15-105 (445)
458 COG3349 Uncharacterized conser 42.6 30 0.00065 35.6 4.0 33 119-161 1-33 (485)
459 PF02635 DrsE: DsrE/DsrF-like 42.4 60 0.0013 25.9 5.2 42 119-162 1-45 (122)
460 PLN02496 probable phosphopanto 42.3 68 0.0015 29.0 5.7 38 116-161 17-55 (209)
461 PRK14619 NAD(P)H-dependent gly 42.1 49 0.0011 32.1 5.3 34 117-160 3-36 (308)
462 PF09587 PGA_cap: Bacterial ca 42.0 1.7E+02 0.0036 27.3 8.8 58 138-216 171-228 (250)
463 TIGR00750 lao LAO/AO transport 41.8 2.3E+02 0.0049 27.3 9.9 41 118-162 33-73 (300)
464 PF03853 YjeF_N: YjeF-related 41.8 79 0.0017 27.5 6.1 39 117-161 24-62 (169)
465 PLN02650 dihydroflavonol-4-red 41.8 53 0.0012 32.4 5.7 37 115-160 2-38 (351)
466 PLN02260 probable rhamnose bio 41.6 69 0.0015 35.0 7.0 32 115-155 377-408 (668)
467 TIGR03018 pepcterm_TyrKin exop 41.5 73 0.0016 28.7 6.1 43 117-162 33-76 (207)
468 TIGR03012 sulf_tusD_dsrE sulfu 41.4 52 0.0011 27.1 4.6 41 120-162 1-42 (127)
469 PRK12775 putative trifunctiona 41.4 90 0.002 35.9 8.0 107 119-236 100-212 (1006)
470 TIGR00064 ftsY signal recognit 41.3 91 0.002 29.6 6.9 41 117-161 70-110 (272)
471 TIGR03609 S_layer_CsaB polysac 41.3 2.9E+02 0.0063 26.4 10.6 86 334-424 10-108 (298)
472 COG0608 RecJ Single-stranded D 41.3 2.2E+02 0.0048 29.7 10.3 87 118-237 36-122 (491)
473 COG2894 MinD Septum formation 41.1 2.9E+02 0.0063 25.4 9.4 38 120-162 3-42 (272)
474 COG4566 TtrR Response regulato 41.1 2.6E+02 0.0056 24.9 8.8 110 353-462 7-124 (202)
475 PLN02662 cinnamyl-alcohol dehy 40.9 61 0.0013 31.4 5.9 28 134-161 11-38 (322)
476 PF03446 NAD_binding_2: NAD bi 40.7 48 0.001 28.6 4.6 32 119-160 2-33 (163)
477 PRK04284 ornithine carbamoyltr 40.6 3.7E+02 0.0079 26.4 12.2 131 257-400 92-233 (332)
478 KOG0780 Signal recognition par 40.6 64 0.0014 32.0 5.6 90 119-213 101-192 (483)
479 PRK08192 aspartate carbamoyltr 40.4 3.7E+02 0.0081 26.5 13.1 135 257-400 92-235 (338)
480 PF01370 Epimerase: NAD depend 40.4 47 0.001 30.3 4.8 68 134-211 5-72 (236)
481 PRK14618 NAD(P)H-dependent gly 40.1 47 0.001 32.5 5.0 35 117-161 3-37 (328)
482 TIGR03029 EpsG chain length de 40.1 70 0.0015 30.3 6.0 43 116-161 100-142 (274)
483 PRK06111 acetyl-CoA carboxylas 40.1 2.1E+02 0.0046 29.3 10.0 77 119-211 3-81 (450)
484 PF06564 YhjQ: YhjQ protein; 40.1 57 0.0012 30.3 5.1 38 119-161 1-40 (243)
485 PRK02910 light-independent pro 40.0 1E+02 0.0022 32.5 7.6 93 118-234 293-386 (519)
486 PRK10569 NAD(P)H-dependent FMN 40.0 71 0.0015 28.5 5.6 39 119-160 1-40 (191)
487 cd06310 PBP1_ABC_sugar_binding 40.0 2.3E+02 0.005 26.3 9.6 87 120-234 1-88 (273)
488 cd08549 G1PDH_related Glycerol 40.0 2.3E+02 0.005 27.8 9.7 86 119-234 25-110 (332)
489 TIGR02113 coaC_strep phosphopa 39.8 60 0.0013 28.5 5.0 36 120-161 2-37 (177)
490 PRK13302 putative L-aspartate 39.7 1.4E+02 0.003 28.4 7.8 94 324-425 7-101 (271)
491 PF03721 UDPG_MGDP_dh_N: UDP-g 39.7 35 0.00077 30.2 3.6 33 119-161 1-33 (185)
492 TIGR01472 gmd GDP-mannose 4,6- 39.6 99 0.0021 30.3 7.2 27 134-160 7-33 (343)
493 cd06270 PBP1_GalS_like Ligand 39.6 3.1E+02 0.0067 25.3 18.3 74 136-237 14-87 (268)
494 COG3367 Uncharacterized conser 39.5 3.7E+02 0.008 26.2 11.7 39 120-162 150-188 (339)
495 PRK14476 nitrogenase molybdenu 39.5 1.4E+02 0.003 30.8 8.4 84 118-233 311-394 (455)
496 PRK06444 prephenate dehydrogen 39.4 38 0.00082 30.4 3.7 28 119-155 1-28 (197)
497 TIGR01279 DPOR_bchN light-inde 39.4 72 0.0016 32.4 6.2 94 117-234 273-367 (407)
498 PF05728 UPF0227: Uncharacteri 39.4 1.5E+02 0.0031 26.4 7.4 76 134-235 11-88 (187)
499 TIGR02417 fruct_sucro_rep D-fr 39.4 3.6E+02 0.0077 26.0 12.7 90 117-236 59-148 (327)
500 KOG1429 dTDP-glucose 4-6-dehyd 39.2 60 0.0013 30.8 4.9 37 115-160 24-60 (350)
No 1
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.9e-56 Score=461.07 Aligned_cols=407 Identities=82% Similarity=1.349 Sum_probs=349.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..++|||+++++..|++..||.+.++.+++++|.++||+|++++..........+..+.+...++.+.+......+....
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 134 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSP 134 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCH
Confidence 37889999999888888899999999999999999999999999876544444455555555555444444444444455
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
.+.+.+++.+||+||+|.+....+.++.+++..++|+|+++|++.+.+.......+..+..+.+++.+++.+|.++++|+
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~ 214 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSP 214 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCH
Confidence 78889999999999999876666666667788899999999997765544433333333344567888899999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEE
Q 009759 275 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIA 354 (526)
Q Consensus 275 ~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ 354 (526)
..++.+.+.+..+.+++.+++||+|.+.|.+.......+.++....+++++|+|+|++.+.||++.++++++++++++|+
T Consensus 215 ~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~~~~~l~ 294 (465)
T PLN02871 215 ALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERLPGARLA 294 (465)
T ss_pred HHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhCCCcEEE
Confidence 99999998775556899999999999988776555555555543345678899999999999999999999999999999
Q ss_pred EEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccC
Q 009759 355 FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ 434 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~ 434 (526)
|+|+|++.+++++++++.+|+|+|+++++|+..+|+.||++|+||..|++|++++||||+|+|||+++.||..|++ +
T Consensus 295 ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv---~ 371 (465)
T PLN02871 295 FVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGIPDII---P 371 (465)
T ss_pred EEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhh---h
Confidence 9999999999999988889999999999999999999999999999999999999999999999999999999999 7
Q ss_pred C---CceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCchh
Q 009759 435 D---GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRKKRAQLLRPIQ 511 (526)
Q Consensus 435 ~---~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~~~~~~~~~~~~~~~ 511 (526)
+ +.+|++++++|+++++++|.++++|++.+++|++++++.+++|+|+.+++++++..|+++++.|++++.+++++++
T Consensus 372 ~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~~~~~~~~~~~~~~~ 451 (465)
T PLN02871 372 PDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAIWFWRKKRAQLLGPVQ 451 (465)
T ss_pred cCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7 8999999999999999999999999999999999999999999999999999866899999999999999999999
Q ss_pred hhhhhcCCCCcCC
Q 009759 512 WLAKRIFPSAEVN 524 (526)
Q Consensus 512 ~~~~~~~~~~~~~ 524 (526)
|.+..+++.|+.|
T Consensus 452 ~~~~~~~~~~~~~ 464 (465)
T PLN02871 452 WLPAQLFPAPEVN 464 (465)
T ss_pred hhhhhcccccccC
Confidence 9999999999876
No 2
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.7e-44 Score=372.58 Aligned_cols=383 Identities=19% Similarity=0.220 Sum_probs=282.2
Q ss_pred CCCCcEEEEE-eccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCc------------------ee-
Q 009759 115 NSRPRRIALF-VEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGA------------------KL- 172 (526)
Q Consensus 115 ~~~~mkIliv-~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~------------------~~- 172 (526)
...+|||++| ++..|+...||.+.++..|.++|+++||+|.|+++.+..... ..+. .+
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 557 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIW 557 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEE
Confidence 4667999999 666799999999999999999999999999999997753320 0000 00
Q ss_pred ----ccccccCCC------ccccc--c-------chhcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHH-----h
Q 009759 173 ----IGSRSFPCP------WYQKV--P-------LSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAK-----L 226 (526)
Q Consensus 173 ----~~~~~~~~~------~~~~~--~-------~~~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~-----~ 226 (526)
.++..+-+. ++.+- . ....+.+....++.. ++|||||+|+|+....+.++... .
T Consensus 558 ~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~ 637 (977)
T PLN02939 558 TGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGF 637 (977)
T ss_pred EEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccC
Confidence 011111000 11000 0 011222334455554 69999999999876654433321 2
Q ss_pred cCCCEEEEEecCCcccccc------ccc--ccc---------cchHHHHHHHHhhcCcEEEeCChhHHHHHHHhc-----
Q 009759 227 LCVPIVMSYHTHVPVYIPR------YTF--SWL---------VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR----- 284 (526)
Q Consensus 227 ~~~p~v~~~h~~~~~~~~~------~~~--~~~---------~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~----- 284 (526)
.++|+|+++|+........ ... ..+ ......+.+..+..+|.|+++|+.+++++...+
T Consensus 638 ~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~ 717 (977)
T PLN02939 638 NSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQ 717 (977)
T ss_pred CCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchH
Confidence 4689999999964221100 000 000 001124455667789999999999999987632
Q ss_pred ---ccCCCcEEEeecCCCCCCCCCCcc------------------cHHHHHhhcCCC--CCCcEEEEEecccccccHHHH
Q 009759 285 ---VTAANKIRIWKKGVDSESFHPRFR------------------SSEMRWRLSNGE--PDKPLIVHVGRLGVEKSLDFL 341 (526)
Q Consensus 285 ---~~~~~ki~vi~ngid~~~~~~~~~------------------~~~~~~~~~~~~--~~~~~i~~vG~l~~~Kg~~~l 341 (526)
.....++.+|+||||.+.|.|..+ +..++.++++.. ++.++|+|+||+.++||++.+
T Consensus 718 ~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlL 797 (977)
T PLN02939 718 DTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLI 797 (977)
T ss_pred HHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHH
Confidence 235678999999999999988643 345677777643 357899999999999999999
Q ss_pred HHHHHhC--CCcEEEEEeCCcc---HHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHH
Q 009759 342 KRVMDRL--PEARIAFIGDGPY---REELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 412 (526)
Q Consensus 342 i~a~~~l--~~~~l~ivG~g~~---~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAm 412 (526)
++|+..+ ++++|+|+|+|+. .+.++.++... +|.|.|.+++...+.+|+.||++|+||++|+||++++|||
T Consensus 798 leA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAM 877 (977)
T PLN02939 798 RHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAM 877 (977)
T ss_pred HHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHH
Confidence 9999876 5799999999964 35566665543 5999999987778899999999999999999999999999
Q ss_pred HcCCcEEEeCCCCCCceeccc------CCCceeEeeCCCCHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHhCCHHH
Q 009759 413 SSGIPVVGVRAGGIPDIIPED------QDGKIGYLFNPGDLDDCLSKLEPLLY----NQELRETMGQAARQEMEKYDWRA 482 (526)
Q Consensus 413 a~G~PvI~~~~gg~~e~v~~~------~~~~~g~~~~~~d~~~la~ai~~ll~----d~~~~~~~~~~a~~~~~~fs~~~ 482 (526)
+||+|+|++++||+.|.+.+. .++.+|+++++.|+++|+++|.+++. |++.+++|++++. .++|||+.
T Consensus 878 AyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am--~~dFSWe~ 955 (977)
T PLN02939 878 RYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDM--NIDFSWDS 955 (977)
T ss_pred HCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HhcCCHHH
Confidence 999999999999999998321 12579999999999999999998875 7999999987653 26899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009759 483 ATRTIRNEQYNAAIWFWR 500 (526)
Q Consensus 483 ~~~~~~~~ly~~~l~~~~ 500 (526)
++++|+ ++|++++...+
T Consensus 956 ~A~qYe-eLY~~ll~~~~ 972 (977)
T PLN02939 956 SASQYE-ELYQRAVARAR 972 (977)
T ss_pred HHHHHH-HHHHHHHHhhh
Confidence 999997 89999987543
No 3
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.2e-43 Score=361.51 Aligned_cols=370 Identities=18% Similarity=0.208 Sum_probs=282.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc---------------cccCceeccccccCCCcc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ---------------EFYGAKLIGSRSFPCPWY 183 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 183 (526)
|||++++..++ |..||.+.++.+++++|.++||+|+|+++....+. ...++.+.++........
T Consensus 1 mkIlii~~~~~-P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~ 79 (412)
T PRK10307 1 MKILVYGINYA-PELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQP 79 (412)
T ss_pred CeEEEEecCCC-CCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCc
Confidence 89999998664 67899999999999999999999999997532111 012233333222111000
Q ss_pred ccccc---hhcccH-HHHHHHH--hcCCCEEEECCCchH-HHHHHHHHHhcCCCEEEEEecCCccccccc---ccccccc
Q 009759 184 QKVPL---SLALSP-RIISEVA--RFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRY---TFSWLVK 253 (526)
Q Consensus 184 ~~~~~---~~~~~~-~l~~~l~--~~~pDiV~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~---~~~~~~~ 253 (526)
..... ...+.. .+..+++ +.+||+||+|.+... ...+..+++..++|+++++||.++...... ......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~ 159 (412)
T PRK10307 80 SGLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVAR 159 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHH
Confidence 00000 000111 1111222 268999999987544 344566778889999999998765322111 1122223
Q ss_pred hHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcc--cHHHHHhhcCCCCCCcEEEEEec
Q 009759 254 PMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR--SSEMRWRLSNGEPDKPLIVHVGR 331 (526)
Q Consensus 254 ~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~vG~ 331 (526)
....+++.+++.+|.++++|+.+++.+.+.+ .+..++.+||||+|.+.+.+... ....+.+++. .++.++++|+|+
T Consensus 160 ~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~-~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~ 237 (412)
T PRK10307 160 LATAFERSLLRRFDNVSTISRSMMNKAREKG-VAAEKVIFFPNWSEVARFQPVADADVDALRAQLGL-PDGKKIVLYSGN 237 (412)
T ss_pred HHHHHHHHHHhhCCEEEecCHHHHHHHHHcC-CCcccEEEECCCcCHhhcCCCCccchHHHHHHcCC-CCCCEEEEEcCc
Confidence 3446788899999999999999999998765 36678999999999988765432 2244555544 456788999999
Q ss_pred ccccccHHHHHHHHHhC---CCcEEEEEeCCccHHHHHHHhcCC---CeEEecccChhhHHHHHHcCcEEEecCCCCC--
Q 009759 332 LGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESET-- 403 (526)
Q Consensus 332 l~~~Kg~~~li~a~~~l---~~~~l~ivG~g~~~~~l~~l~~~~---~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~-- 403 (526)
+.+.||++.+++|++.+ ++++|+|+|+|+..+++++++++. +|.|+|+++.+++.++|++||++++|+..|+
T Consensus 238 l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~ 317 (412)
T PRK10307 238 IGEKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAAD 317 (412)
T ss_pred cccccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCccc
Confidence 99999999999999877 579999999999888888877643 6999999999999999999999999999887
Q ss_pred --CcHHHHHHHHcCCcEEEeCCCCC--CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhC
Q 009759 404 --LGLVVLEAMSSGIPVVGVRAGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKY 478 (526)
Q Consensus 404 --~~~~ilEAma~G~PvI~~~~gg~--~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~f 478 (526)
+|.+++|||+||+|||+++.+|. .+++ + .+|++++++|+++++++|.++++|++.+++|++++++.+ ++|
T Consensus 318 ~~~p~kl~eama~G~PVi~s~~~g~~~~~~i---~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~f 392 (412)
T PRK10307 318 LVLPSKLTNMLASGRNVVATAEPGTELGQLV---E--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTL 392 (412)
T ss_pred ccCcHHHHHHHHcCCCEEEEeCCCchHHHHH---h--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHc
Confidence 68899999999999999998763 5777 4 589999999999999999999999999999999999999 489
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 009759 479 DWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 479 s~~~~~~~~~~~ly~~~l~ 497 (526)
||+.+++++. ++|++++.
T Consensus 393 s~~~~~~~~~-~~~~~~~~ 410 (412)
T PRK10307 393 DKENVLRQFI-ADIRGLVA 410 (412)
T ss_pred CHHHHHHHHH-HHHHHHhc
Confidence 9999999997 89988875
No 4
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.4e-43 Score=364.74 Aligned_cols=371 Identities=20% Similarity=0.261 Sum_probs=270.8
Q ss_pred cEEEEEecc-CCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc----------------------ccCceeccc
Q 009759 119 RRIALFVEP-SPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE----------------------FYGAKLIGS 175 (526)
Q Consensus 119 mkIliv~~~-~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~----------------------~~~~~~~~~ 175 (526)
|||++++.. +|+...||.+.++..|+++|+++||+|.|+++.++.... ..+++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 899999654 788889999999999999999999999999987653210 011211111
Q ss_pred cc---cCCC-ccccccch---hcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHHh-----cCCCEEEEEecCCcc
Q 009759 176 RS---FPCP-WYQKVPLS---LALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAKL-----LCVPIVMSYHTHVPV 241 (526)
Q Consensus 176 ~~---~~~~-~~~~~~~~---~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~-----~~~p~v~~~h~~~~~ 241 (526)
.. +... .+...... ..+.....+++++ .+|||||+|+|.....+ .++++. .++|+|+|+|+....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~-~~l~~~~~~~~~~~~~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIP-ALLKEKYWRGYPDIKTVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHH-HHHHHhhhccCCCCCEEEEcCCCcCC
Confidence 10 0000 01000000 0122334444443 48999999997654443 333333 379999999996432
Q ss_pred cccc------ccc---cc-ccc----hHHHHHHHHhhcCcEEEeCChhHHHHHHHhc---------ccCCCcEEEeecCC
Q 009759 242 YIPR------YTF---SW-LVK----PMWLVIKFLHRAADLTLVPSVAIGKDLEAAR---------VTAANKIRIWKKGV 298 (526)
Q Consensus 242 ~~~~------~~~---~~-~~~----~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~---------~~~~~ki~vi~ngi 298 (526)
.... ... .+ ... ....+.+..+..+|.++++|+.+++++.... ..+.+++.+|+||+
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGi 239 (466)
T PRK00654 160 GLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGI 239 (466)
T ss_pred CcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCC
Confidence 1100 000 00 000 0123456678999999999999999887521 22457899999999
Q ss_pred CCCCCCCCcc------------------cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC--CCcEEEEEeC
Q 009759 299 DSESFHPRFR------------------SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGD 358 (526)
Q Consensus 299 d~~~~~~~~~------------------~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l--~~~~l~ivG~ 358 (526)
|.+.|.|... +..++.++++..++.++|+|+||+.++||++.+++|++++ .+++|+|+|+
T Consensus 240 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~ 319 (466)
T PRK00654 240 DYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGT 319 (466)
T ss_pred CccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEec
Confidence 9999987532 2345666666445788999999999999999999999887 4799999998
Q ss_pred Cc--cHHHHHHHhcCC--CeEE-ecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceeccc
Q 009759 359 GP--YREELEKMFTGM--PAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED 433 (526)
Q Consensus 359 g~--~~~~l~~l~~~~--~V~~-~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~ 433 (526)
|+ +.+.+++++++. ++.+ .|+ +.+++..+|++||++|+||++|+||++++|||+||+|+|++++||+.|++
T Consensus 320 g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v--- 395 (466)
T PRK00654 320 GDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTV--- 395 (466)
T ss_pred CcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCcccee---
Confidence 75 356777777654 4554 455 55667899999999999999999999999999999999999999999999
Q ss_pred CCC------ceeEeeCCCCHHHHHHHHHHhhh---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 434 QDG------KIGYLFNPGDLDDCLSKLEPLLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 434 ~~~------~~g~~~~~~d~~~la~ai~~ll~---d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
.++ .+|++++++|+++++++|.++++ +++.++++++++++ ++|||+.++++++ ++|+++++
T Consensus 396 ~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~lY~~~~~ 465 (466)
T PRK00654 396 IDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYL-ELYRRLLG 465 (466)
T ss_pred ecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHHHHHhh
Confidence 666 89999999999999999999876 67778888777653 5899999999997 89998864
No 5
>PLN02316 synthase/transferase
Probab=100.00 E-value=5.7e-43 Score=372.64 Aligned_cols=363 Identities=18% Similarity=0.226 Sum_probs=271.7
Q ss_pred CCCCcEEEEE-eccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCce------------------ec
Q 009759 115 NSRPRRIALF-VEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAK------------------LI 173 (526)
Q Consensus 115 ~~~~mkIliv-~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~------------------~~ 173 (526)
...+|||++| .+..|+...||.+.++..|+++|+++||+|.|+++.+..... ..... .-
T Consensus 584 ~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 663 (1036)
T PLN02316 584 KEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVE 663 (1036)
T ss_pred CCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEEC
Confidence 3456999999 466788899999999999999999999999999997753110 00000 00
Q ss_pred cccccCCC----cccc---------ccchhcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHH------hcCCCEE
Q 009759 174 GSRSFPCP----WYQK---------VPLSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAK------LLCVPIV 232 (526)
Q Consensus 174 ~~~~~~~~----~~~~---------~~~~~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~------~~~~p~v 232 (526)
++..+-+. ++.. ......+......++.+ .+|||||+|+|.....+. +++. ..++|+|
T Consensus 664 GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~-llk~~~~~~~~~~~p~V 742 (1036)
T PLN02316 664 GLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAW-LFKDHYAHYGLSKARVV 742 (1036)
T ss_pred CcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHH-HHHHhhhhhccCCCCEE
Confidence 11111000 1100 00111222334444443 589999999986544433 3333 2468999
Q ss_pred EEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhccc--CCCcEEEeecCCCCCCCCCCcc--
Q 009759 233 MSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVT--AANKIRIWKKGVDSESFHPRFR-- 308 (526)
Q Consensus 233 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~--~~~ki~vi~ngid~~~~~~~~~-- 308 (526)
+++|+.... ....+..+..+|.|+++|+.+++++...+.. ...++.+|+||||.+.|.|..+
T Consensus 743 ~TiHnl~~~--------------~n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~ 808 (1036)
T PLN02316 743 FTIHNLEFG--------------ANHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNF 808 (1036)
T ss_pred EEeCCcccc--------------hhHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCccccc
Confidence 999985311 0124457789999999999999999876542 2479999999999998876422
Q ss_pred -----------------cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC--CCcEEEEEeCCcc---HHHHH
Q 009759 309 -----------------SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY---REELE 366 (526)
Q Consensus 309 -----------------~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l--~~~~l~ivG~g~~---~~~l~ 366 (526)
+..++.++++...+.++|+|+||+.++||++.|++|+..+ .+++|+|+|+|+. .+.++
T Consensus 809 lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~ 888 (1036)
T PLN02316 809 IPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFV 888 (1036)
T ss_pred ccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHH
Confidence 2235666766444678999999999999999999999886 5799999999864 45666
Q ss_pred HHhcC------CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCC-----
Q 009759 367 KMFTG------MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD----- 435 (526)
Q Consensus 367 ~l~~~------~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~----- 435 (526)
+++.. .+|.|.|..+....+.+|+.||++|+||++|+||++++|||+||+|+|++++||+.|.+ .+
T Consensus 889 ~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV---~d~d~~~ 965 (1036)
T PLN02316 889 NLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTV---FDVDHDK 965 (1036)
T ss_pred HHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhc---ccccccc
Confidence 66663 25888887765445689999999999999999999999999999999999999999999 44
Q ss_pred --------CceeEeeCCCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Q 009759 436 --------GKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 436 --------~~~g~~~~~~d~~~la~ai~~ll~d-~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l 496 (526)
+.+|+++++.|+++|+.+|.+++.+ .+....+++.+++.+ ++|||+.++++|+ ++|+++.
T Consensus 966 ~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~-~LY~~a~ 1035 (1036)
T PLN02316 966 ERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYM-ELYHSAR 1035 (1036)
T ss_pred ccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHh
Confidence 3689999999999999999999986 455666788888887 5899999999997 8999875
No 6
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.3e-42 Score=356.10 Aligned_cols=374 Identities=22% Similarity=0.249 Sum_probs=272.5
Q ss_pred CCcEEEEE-eccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccC------ce--------e-----ccc
Q 009759 117 RPRRIALF-VEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYG------AK--------L-----IGS 175 (526)
Q Consensus 117 ~~mkIliv-~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~------~~--------~-----~~~ 175 (526)
++|||+++ ++..|+.+.||.+.++..|.++|+++||+|.|+.+.++... .... .. + .++
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGGL 81 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCCc
Confidence 46999999 67789999999999999999999999999999999765331 0000 00 0 000
Q ss_pred ccc--------CCC--cccc-----ccc---hh-cccHHHHHHH----HhcCCCEEEECCCchHHHHHHHHH-HhcCCCE
Q 009759 176 RSF--------PCP--WYQK-----VPL---SL-ALSPRIISEV----ARFKPDIIHASSPGIMVFGALIIA-KLLCVPI 231 (526)
Q Consensus 176 ~~~--------~~~--~~~~-----~~~---~~-~~~~~l~~~l----~~~~pDiV~~~~~~~~~~~~~~~~-~~~~~p~ 231 (526)
..+ ..+ .+.. ... .+ .+......++ .+++|||||+|+|+......++.. ...++|+
T Consensus 82 ~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~~~~~ 161 (485)
T PRK14099 82 DLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRPAPGT 161 (485)
T ss_pred eEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCCCCCE
Confidence 000 000 0100 000 01 1122223333 247999999999876554433321 1346899
Q ss_pred EEEEecCCccc-ccccc-----c--cccc------chHHHHHHHHhhcCcEEEeCChhHHHHHHHhc---------ccCC
Q 009759 232 VMSYHTHVPVY-IPRYT-----F--SWLV------KPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR---------VTAA 288 (526)
Q Consensus 232 v~~~h~~~~~~-~~~~~-----~--~~~~------~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~---------~~~~ 288 (526)
|+|+|+..... ..... . .... .....+.+..+..+|.|+++|+.+++++.+.. ..+.
T Consensus 162 V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~ 241 (485)
T PRK14099 162 VFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRA 241 (485)
T ss_pred EEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhC
Confidence 99999964221 10000 0 0000 00013467788999999999999999987532 1235
Q ss_pred CcEEEeecCCCCCCCCCCcc------------------cHHHHHhhcCCC-CCCcEEEEEecccccccHHHHHHHHHhC-
Q 009759 289 NKIRIWKKGVDSESFHPRFR------------------SSEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL- 348 (526)
Q Consensus 289 ~ki~vi~ngid~~~~~~~~~------------------~~~~~~~~~~~~-~~~~~i~~vG~l~~~Kg~~~li~a~~~l- 348 (526)
+++.+|+||+|.+.|.|... +..++.++++.. .+.++++++||+.++||++.+++|+..+
T Consensus 242 ~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~ 321 (485)
T PRK14099 242 DRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLL 321 (485)
T ss_pred CCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHH
Confidence 79999999999999987643 234556666633 3568899999999999999999999877
Q ss_pred -CCcEEEEEeCCc--cHHHHHHHhcCC--Ce-EEecccChhhHHHHH-HcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 349 -PEARIAFIGDGP--YREELEKMFTGM--PA-VFTGMLLGEELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 349 -~~~~l~ivG~g~--~~~~l~~l~~~~--~V-~~~g~v~~~~l~~~~-~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
.+++|+|+|+|+ ..+.+++++++. ++ .+.|+ ++++..+| +.||++|+||++|+||++++|||+||+|+|++
T Consensus 322 ~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs 399 (485)
T PRK14099 322 GEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVA 399 (485)
T ss_pred hcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEe
Confidence 479999999886 456777776543 44 68898 47888876 57999999999999999999999999999999
Q ss_pred CCCCCCceecccCCC---------ceeEeeCCCCHHHHHHHHHH---hhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009759 422 RAGGIPDIIPEDQDG---------KIGYLFNPGDLDDCLSKLEP---LLYNQELRETMGQAARQEMEKYDWRAATRTIRN 489 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~---------~~g~~~~~~d~~~la~ai~~---ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~ 489 (526)
++||+.|.+ .++ .+|+++++.|+++++++|.+ +++|++.+++++++++ .++|||+.++++++
T Consensus 400 ~~GGl~d~V---~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a~~y~- 473 (485)
T PRK14099 400 RVGGLADTV---VDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRNGM--TTDVSWRNPAQHYA- 473 (485)
T ss_pred CCCCcccee---ecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhh--hhcCChHHHHHHHH-
Confidence 999999998 443 68999999999999999997 6779999999999886 36899999999997
Q ss_pred HHHHHHHHH
Q 009759 490 EQYNAAIWF 498 (526)
Q Consensus 490 ~ly~~~l~~ 498 (526)
++|++++..
T Consensus 474 ~lY~~l~~~ 482 (485)
T PRK14099 474 ALYRSLVAE 482 (485)
T ss_pred HHHHHHHhh
Confidence 999999854
No 7
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.4e-42 Score=351.65 Aligned_cols=357 Identities=20% Similarity=0.273 Sum_probs=274.1
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--c--ccCceeccccccCCCccccccchhcccHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--E--FYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
||+++++.+. |..||.++++..++++|.++||+|+|++...+... . ..++.+..++...................
T Consensus 1 kI~~v~~~~~-p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~ 79 (398)
T cd03796 1 RICMVSDFFY-PNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPL 79 (398)
T ss_pred CeeEEeeccc-cccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHH
Confidence 7899988654 77899999999999999999999999997543211 1 11222222221111100111122334456
Q ss_pred HHHHHHhcCCCEEEECCCchH-HHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 196 IISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
+.+.+++.+||+||+|++... ...+.++++..++|+|++.|+.++.. . ..........+..++.+|.++++|+
T Consensus 80 l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~--~----~~~~~~~~~~~~~~~~~d~ii~~s~ 153 (398)
T cd03796 80 LRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFA--D----ASSIHTNKLLRFSLADVDHVICVSH 153 (398)
T ss_pred HHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEeccccccc--c----hhhHHhhHHHHHhhccCCEEEEecH
Confidence 777888889999999986433 33455667888999999999864311 0 0011122455677899999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CC
Q 009759 275 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE 350 (526)
Q Consensus 275 ~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~ 350 (526)
...+.+....+.+.+++.+||||+|.+.|.+.... ..++.++++|+|++.+.||++.++++++.+ ++
T Consensus 154 ~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~---------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~ 224 (398)
T cd03796 154 TSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK---------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPN 224 (398)
T ss_pred hHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc---------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCC
Confidence 99887644444466899999999998877654321 135678899999999999999999999754 68
Q ss_pred cEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 351 ARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 351 ~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
++|+++|+|+..+.+++++++. +|.+.|+++.+++..+|+.||++|+||..|++|++++||||||+|||+++.||.
T Consensus 225 ~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~ 304 (398)
T cd03796 225 VRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI 304 (398)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc
Confidence 9999999998888888777653 599999999999999999999999999999999999999999999999999999
Q ss_pred CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHH
Q 009759 427 PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWF 498 (526)
Q Consensus 427 ~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l~~ 498 (526)
.|++ .++. ++++. .|.++++++|.+++++......+++++++.+ ++|||+.++++++ ++|++++..
T Consensus 305 ~e~i---~~~~-~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~~l~~~ 371 (398)
T cd03796 305 PEVL---PPDM-ILLAE-PDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTE-KVYDRILQT 371 (398)
T ss_pred hhhe---eCCc-eeecC-CCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHhcC
Confidence 9999 5553 44444 4899999999999998776667788888887 6899999999998 999998864
No 8
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=2.3e-42 Score=354.51 Aligned_cols=377 Identities=18% Similarity=0.261 Sum_probs=275.2
Q ss_pred CcEEEEE-eccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc----ccC------ce--------ecccc--
Q 009759 118 PRRIALF-VEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE----FYG------AK--------LIGSR-- 176 (526)
Q Consensus 118 ~mkIliv-~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~----~~~------~~--------~~~~~-- 176 (526)
.|||+++ ++..|+.+.||.+.++..|.++|+++||+|.|+.+.+..... ... .. ...+.
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 3999999 677799999999999999999999999999999997643321 000 00 00000
Q ss_pred ccC---CC--------------cccc------c----cchhcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHH--
Q 009759 177 SFP---CP--------------WYQK------V----PLSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAK-- 225 (526)
Q Consensus 177 ~~~---~~--------------~~~~------~----~~~~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~-- 225 (526)
..+ ++ .+.. . .....+.....+.+++ ++|||||+|+|+....+.++..+
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~ 164 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYA 164 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhh
Confidence 000 00 0000 0 0001122234445543 58999999998765444333222
Q ss_pred ----hcCCCEEEEEecCCccccccc----------cccccc--chHHHHHHHHhhcCcEEEeCChhHHHHHHHh----cc
Q 009759 226 ----LLCVPIVMSYHTHVPVYIPRY----------TFSWLV--KPMWLVIKFLHRAADLTLVPSVAIGKDLEAA----RV 285 (526)
Q Consensus 226 ----~~~~p~v~~~h~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~----~~ 285 (526)
..++|+|+++|+......... ...+.. .....+.+..+..+|.|+++|+.+++++.+. ++
T Consensus 165 ~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~g 244 (489)
T PRK14098 165 DHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFG 244 (489)
T ss_pred hccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcC
Confidence 137999999998643211100 000000 0112456778899999999999999998752 12
Q ss_pred c------CCCcEEEeecCCCCCCCCCCcc------------------cHHHHHhhcCC-CCCCcEEEEEecccccccHHH
Q 009759 286 T------AANKIRIWKKGVDSESFHPRFR------------------SSEMRWRLSNG-EPDKPLIVHVGRLGVEKSLDF 340 (526)
Q Consensus 286 ~------~~~ki~vi~ngid~~~~~~~~~------------------~~~~~~~~~~~-~~~~~~i~~vG~l~~~Kg~~~ 340 (526)
. ...++.+|+||||.+.|.|... +..++.++++. .++.++|+++||+.++||++.
T Consensus 245 l~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~ 324 (489)
T PRK14098 245 LDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAEL 324 (489)
T ss_pred hHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHHH
Confidence 2 2579999999999999987643 22344455553 246789999999999999999
Q ss_pred HHHHHHhC--CCcEEEEEeCCc--cHHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHc
Q 009759 341 LKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 414 (526)
Q Consensus 341 li~a~~~l--~~~~l~ivG~g~--~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~ 414 (526)
+++|+..+ ++++|+|+|+|+ +.+.+++++++. +|.+.|.++++++..+|++||++|+||++|+||++++|||+|
T Consensus 325 li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~ 404 (489)
T PRK14098 325 LAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSY 404 (489)
T ss_pred HHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhC
Confidence 99999887 579999999886 356777777644 699999999889999999999999999999999999999999
Q ss_pred CCcEEEeCCCCCCceeccc-CCCceeEeeCCCCHHHHHHHHHHhh---hCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009759 415 GIPVVGVRAGGIPDIIPED-QDGKIGYLFNPGDLDDCLSKLEPLL---YNQELRETMGQAARQEMEKYDWRAATRTIRNE 490 (526)
Q Consensus 415 G~PvI~~~~gg~~e~v~~~-~~~~~g~~~~~~d~~~la~ai~~ll---~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ 490 (526)
|+|+|++++||+.|.+.+. +++.+|+++++.|+++++++|.+++ +|++.++++++++. .++|||+..+++++ +
T Consensus 405 G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~y~-~ 481 (489)
T PRK14098 405 GTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAM--ERDFSWKNSAEEYA-Q 481 (489)
T ss_pred CCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh--cCCCChHHHHHHHH-H
Confidence 9999999999999988221 2367999999999999999999865 58888888776553 25899999999997 9
Q ss_pred HHHHHHH
Q 009759 491 QYNAAIW 497 (526)
Q Consensus 491 ly~~~l~ 497 (526)
+|+++++
T Consensus 482 lY~~~~~ 488 (489)
T PRK14098 482 LYRELLG 488 (489)
T ss_pred HHHHHhc
Confidence 9998863
No 9
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=5.2e-42 Score=354.74 Aligned_cols=370 Identities=22% Similarity=0.290 Sum_probs=274.5
Q ss_pred cEEEEEecc-CCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc-----------------------------c
Q 009759 119 RRIALFVEP-SPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF-----------------------------Y 168 (526)
Q Consensus 119 mkIliv~~~-~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~-----------------------------~ 168 (526)
|||++++.. .|+...||.+.++..|+++|+++||+|.|+++.++..... .
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 899999644 6888899999999999999999999999999877532110 0
Q ss_pred Cceeccccc---cCCC--ccc-----cccchhcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHHhcC---CCEEE
Q 009759 169 GAKLIGSRS---FPCP--WYQ-----KVPLSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAKLLC---VPIVM 233 (526)
Q Consensus 169 ~~~~~~~~~---~~~~--~~~-----~~~~~~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~~~---~p~v~ 233 (526)
++.++.+.. +..+ .+. .......+.....+++++ .+|||||+|++..... +.+++...+ +|+|+
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~-~~~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALV-PALLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHH-HHHHHhhccCCCCCEEE
Confidence 111111100 0000 111 000011223344445543 6899999999765544 344444444 99999
Q ss_pred EEecCCccc-cccccccc-------cc-c-----hHHHHHHHHhhcCcEEEeCChhHHHHHHHh-cc--------cCCCc
Q 009759 234 SYHTHVPVY-IPRYTFSW-------LV-K-----PMWLVIKFLHRAADLTLVPSVAIGKDLEAA-RV--------TAANK 290 (526)
Q Consensus 234 ~~h~~~~~~-~~~~~~~~-------~~-~-----~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~-~~--------~~~~k 290 (526)
++|+..... .+...... .. . ....+.+..+..+|.++++|+.+++++... ++ .+..+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 999865221 11100000 00 0 012456778899999999999999988653 11 13569
Q ss_pred EEEeecCCCCCCCCCCcc------------------cHHHHHhhcCCC-CCCcEEEEEecccccccHHHHHHHHHhC--C
Q 009759 291 IRIWKKGVDSESFHPRFR------------------SSEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--P 349 (526)
Q Consensus 291 i~vi~ngid~~~~~~~~~------------------~~~~~~~~~~~~-~~~~~i~~vG~l~~~Kg~~~li~a~~~l--~ 349 (526)
+.+|+||+|.+.|.|..+ +..++.++++.. ++.++|+|+||+.++||++.+++++..+ .
T Consensus 240 i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~ 319 (473)
T TIGR02095 240 LRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL 319 (473)
T ss_pred eEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc
Confidence 999999999999987532 234566666532 3688999999999999999999999887 3
Q ss_pred CcEEEEEeCCc--cHHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 350 EARIAFIGDGP--YREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 350 ~~~l~ivG~g~--~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
+++|+|+|+|+ +.+.++++..+. ++.+.+.++.+++..+|++||++|+||.+|+||++++|||+||+|||++++||
T Consensus 320 ~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg 399 (473)
T TIGR02095 320 GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG 399 (473)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC
Confidence 69999999984 556777776544 58888888888899999999999999999999999999999999999999999
Q ss_pred CCceecccCCC------ceeEeeCCCCHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 009759 426 IPDIIPEDQDG------KIGYLFNPGDLDDCLSKLEPLLY----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 426 ~~e~v~~~~~~------~~g~~~~~~d~~~la~ai~~ll~----d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~ 495 (526)
+.|++ .++ .+|+++++.|+++++++|.+++. +++.++++++++.+ ++|||++++++++ ++|+++
T Consensus 400 ~~e~v---~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~Y~~l 473 (473)
T TIGR02095 400 LADTV---VDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYV-ELYRSL 473 (473)
T ss_pred ccceE---ecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHH-HHHHhC
Confidence 99999 776 89999999999999999999988 89999999887753 5899999999997 899863
No 10
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=8.3e-42 Score=347.70 Aligned_cols=358 Identities=25% Similarity=0.318 Sum_probs=271.7
Q ss_pred cCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-----cccCceeccccccCCCcccc--ccch-hcccHHHH-HHHHh-
Q 009759 133 VSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-----EFYGAKLIGSRSFPCPWYQK--VPLS-LALSPRII-SEVAR- 202 (526)
Q Consensus 133 ~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~-~~l~~- 202 (526)
.||.+.++.+|+++|.++||+|+|++....... ...++.+..+...+...... .... ..+...+. .++++
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 599999999999999999999999997543211 11233333322111111100 0000 01111222 33333
Q ss_pred -cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccc--cccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 203 -FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT--FSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 203 -~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
.+||+||+|.+.. .+.+..+++..++|+|++.|+.......... ........+..++.+++.+|.++++|+...+.
T Consensus 99 ~~~~Diih~h~~~~-~~~~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~ 177 (405)
T TIGR03449 99 PGYYDLIHSHYWLS-GQVGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEARD 177 (405)
T ss_pred CCCCCeEEechHHH-HHHHHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHHH
Confidence 4799999998533 3445566778899999999986432111000 00111123345677889999999999998888
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CC--cEE
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE--ARI 353 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~--~~l 353 (526)
+...++.+.+++.+|+||+|.+.+.+. .....+.+++. ..++++|+|+|++.+.||++.++++++.+ ++ ++|
T Consensus 178 ~~~~~~~~~~ki~vi~ngvd~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l 255 (405)
T TIGR03449 178 LVRHYDADPDRIDVVAPGADLERFRPG-DRATERARLGL-PLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRV 255 (405)
T ss_pred HHHHcCCChhhEEEECCCcCHHHcCCC-cHHHHHHhcCC-CCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEE
Confidence 877666567899999999999888655 33444555544 45678999999999999999999999876 55 899
Q ss_pred EEEeC----C-ccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 354 AFIGD----G-PYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 354 ~ivG~----g-~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
+++|. | +..++++++++.. +|.++|+++.+++.++|+.||++++||..|++|++++|||++|+|||+++.|
T Consensus 256 ~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~ 335 (405)
T TIGR03449 256 IVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVG 335 (405)
T ss_pred EEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCC
Confidence 99995 3 4456677766543 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
+..|++ .++.+|++++++|+++++++|.+++++++.++++++++++.+++|+|+.++++++ ++|.+++.
T Consensus 336 ~~~e~i---~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~-~~y~~~~~ 404 (405)
T TIGR03449 336 GLPVAV---ADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLL-SSYRDALA 404 (405)
T ss_pred CcHhhh---ccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhh
Confidence 999999 8899999999999999999999999999999999999999888999999999997 89988763
No 11
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.9e-41 Score=341.11 Aligned_cols=357 Identities=23% Similarity=0.382 Sum_probs=276.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--cccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--EFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||++++. +..||.+.++.+++++|.++||+|++++....... ...+...........+..............+
T Consensus 1 mki~~~~~----p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (371)
T cd04962 1 MKIGIVCY----PTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKI 76 (371)
T ss_pred CceeEEEE----eCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEecccccchhhcchhHHHHHHHH
Confidence 79999974 56799999999999999999999999987543211 1112121111111111111112223344677
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHh---cCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKL---LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
.+.+++.+||+||+|.+........+..+. .++|+++++|+........ ....+.+.+..++.+|.++++|
T Consensus 77 ~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------~~~~~~~~~~~~~~~d~ii~~s 150 (371)
T cd04962 77 AEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQ------DPSFQPATRFSIEKSDGVTAVS 150 (371)
T ss_pred HHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccc------cccchHHHHHHHhhCCEEEEcC
Confidence 888889999999999754333333333222 3899999999753221111 1122345677889999999999
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC---CC
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---PE 350 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l---~~ 350 (526)
+..++.+.+.+. ...++.+++||+|...+.+.. ....+.+.+. .+++++++++|++.+.||++.++++++.+ .+
T Consensus 151 ~~~~~~~~~~~~-~~~~i~vi~n~~~~~~~~~~~-~~~~~~~~~~-~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~ 227 (371)
T cd04962 151 ESLRQETYELFD-ITKEIEVIPNFVDEDRFRPKP-DEALKRRLGA-PEGEKVLIHISNFRPVKRIDDVIRIFAKVRKEVP 227 (371)
T ss_pred HHHHHHHHHhcC-CcCCEEEecCCcCHhhcCCCc-hHHHHHhcCC-CCCCeEEEEecccccccCHHHHHHHHHHHHhcCC
Confidence 999999887764 467899999999988765542 2333334433 45678899999999999999999999876 36
Q ss_pred cEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 351 ARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 351 ~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
++++++|.|+..+.+++++.+. +|.+.|+. +++.++|+.||++|+||..|++|++++|||++|+|||+++.|+.
T Consensus 228 ~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~ 305 (371)
T cd04962 228 ARLLLVGDGPERSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGI 305 (371)
T ss_pred ceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCc
Confidence 8999999998888887776643 59999987 58999999999999999999999999999999999999999999
Q ss_pred CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 009759 427 PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 427 ~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~ 494 (526)
.|++ .++.+|++++++|+++++++|.++++|++.+.+|++++++.+ ++|+|+.+++++. ++|++
T Consensus 306 ~e~i---~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~~ 370 (371)
T cd04962 306 PEVV---KHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYE-ALYRR 370 (371)
T ss_pred hhhh---cCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHh
Confidence 9999 889999999999999999999999999999999999999996 6899999999997 88875
No 12
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.5e-41 Score=336.74 Aligned_cols=360 Identities=40% Similarity=0.649 Sum_probs=290.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+++++.++ +..||.+.++..++++|.++||+|++++........... ....+.....+..............+.+.
T Consensus 1 kIl~i~~~~~-p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T cd03814 1 RIAIVTDTFL-PQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA-RVVPVPSVPLPGYPEIRLALPPRRRVRRL 78 (364)
T ss_pred CeEEEecccC-ccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC-CceeecccccCcccceEecccchhhHHHH
Confidence 6899998776 666999999999999999999999999986543222111 12222222333333333444455677788
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
+++.+||+||++.+....+.+..+++..++|+++++|+.++.+.............+...+.+++.+|.+++.|+.+.+.
T Consensus 79 ~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~ 158 (364)
T cd03814 79 LDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADE 158 (364)
T ss_pred HHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHH
Confidence 88899999999987666666677778899999999999876544433333333333567788899999999999999986
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCC---CcEEEEE
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP---EARIAFI 356 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~---~~~l~iv 356 (526)
+...+ ..++.+++||+|.+.+.+.......+.++. ..+.+.++|+|++...||++.++++++.+. +++|+++
T Consensus 159 ~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~ 233 (364)
T cd03814 159 LRARG---FRRVRLWPRGVDTELFHPRRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV 233 (364)
T ss_pred HhccC---CCceeecCCCccccccCcccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE
Confidence 65543 368899999999998876544444444442 456778999999999999999999999884 6999999
Q ss_pred eCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCC
Q 009759 357 GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG 436 (526)
Q Consensus 357 G~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~ 436 (526)
|.|+..+.++ ....+|.+.|+++.+++.++|+.||++|+|+..|++|++++|||+||+|||+++.++..+++ +++
T Consensus 234 G~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i---~~~ 308 (364)
T cd03814 234 GDGPARARLE--ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV---TDG 308 (364)
T ss_pred eCCchHHHHh--ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh---cCC
Confidence 9988777665 22348999999999999999999999999999999999999999999999999999999999 888
Q ss_pred ceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 437 KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 437 ~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
.+|+++++.|.++++++|.+++.|++.++++++++++.+++|+|+.++++++ ++|
T Consensus 309 ~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 363 (364)
T cd03814 309 ENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLL-EAY 363 (364)
T ss_pred cceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHH-Hhh
Confidence 9999999999999999999999999999999999999998999999999997 665
No 13
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.2e-40 Score=336.31 Aligned_cols=351 Identities=23% Similarity=0.280 Sum_probs=265.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccC-ce--ec--cccccCCC------------
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYG-AK--LI--GSRSFPCP------------ 181 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~-~~--~~--~~~~~~~~------------ 181 (526)
|||++++..+| .-.+..+.+-+.+|.++||+|.+++........... .. .. .+...+..
T Consensus 1 m~ia~~~~~~P----~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (406)
T PRK15427 1 MKVGFFLLKFP----LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRA 76 (406)
T ss_pred CeEEEEeccCC----ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhh
Confidence 89999999877 455889999999999999999999865432211100 00 00 00000000
Q ss_pred ------ccccc-cch------------hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHH--hcCCCEEEEEecCCc
Q 009759 182 ------WYQKV-PLS------------LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK--LLCVPIVMSYHTHVP 240 (526)
Q Consensus 182 ------~~~~~-~~~------------~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~--~~~~p~v~~~h~~~~ 240 (526)
+.... ... +.....+.+.+++.++|+||+|....... +..++. ..+.++++++|+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~-~~~~~~~~~~~~~~~~t~Hg~d~ 155 (406)
T PRK15427 77 SQTLRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVT-AAKLRELGVLRGKIATIFHGIDI 155 (406)
T ss_pred hhHhhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHH-HHHHHHhCCCCCCeEEEEccccc
Confidence 00000 000 00011223445677899999998644333 333333 345577889997532
Q ss_pred ccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCC
Q 009759 241 VYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGE 320 (526)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~ 320 (526)
.. .. .........+..++.+|.++++|+..++.+.+.+ .+.+++.+++||+|.+.|.+.... ..
T Consensus 156 ~~-~~-----~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l~~~g-~~~~ki~vi~nGvd~~~f~~~~~~---------~~ 219 (406)
T PRK15427 156 SS-RE-----VLNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMG-CPPEKIAVSRMGVDMTRFSPRPVK---------AP 219 (406)
T ss_pred cc-ch-----hhhhhhHHHHHHHHhCCEEEECCHHHHHHHHHcC-CCHHHEEEcCCCCCHHHcCCCccc---------cC
Confidence 11 00 0111123456678899999999999999998764 467899999999999888653211 12
Q ss_pred CCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcC
Q 009759 321 PDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASG 392 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~a 392 (526)
.+...|+|+||+.+.||++.++++++.+ ++++++|+|+|+..+++++++++. +|.+.|+++++++.++|+.|
T Consensus 220 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~a 299 (406)
T PRK15427 220 ATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDA 299 (406)
T ss_pred CCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 3556799999999999999999999876 479999999999888888887754 59999999999999999999
Q ss_pred cEEEecCCC------CCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHH
Q 009759 393 DVFVMPSES------ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRE 465 (526)
Q Consensus 393 Dv~v~ps~~------e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~ 465 (526)
|++|+||.. ||+|++++|||++|+|||+|+.||..|++ +++.+|++++++|+++++++|.++++ |++.++
T Consensus 300 Dv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v---~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~ 376 (406)
T PRK15427 300 DVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELV---EADKSGWLVPENDAQALAQRLAAFSQLDTDELA 376 (406)
T ss_pred CEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhh---cCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHH
Confidence 999999974 99999999999999999999999999999 89999999999999999999999999 999999
Q ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 009759 466 TMGQAARQEM-EKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 466 ~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~ 494 (526)
+|++++++.+ ++|+|+.+++++. ++|++
T Consensus 377 ~~~~~ar~~v~~~f~~~~~~~~l~-~~~~~ 405 (406)
T PRK15427 377 PVVKRAREKVETDFNQQVINRELA-SLLQA 405 (406)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-HHHhh
Confidence 9999999999 5899999999997 78765
No 14
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=9.2e-41 Score=336.39 Aligned_cols=358 Identities=23% Similarity=0.298 Sum_probs=270.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
.||+++... ...||+++++.+++++|.+.||++.+++....... .......++..+..+... ...+.....+.+
T Consensus 2 ~~il~ii~~---~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~i~~~~~~~~~--~~~~~~~~~l~~ 75 (374)
T TIGR03088 2 PLIVHVVYR---FDVGGLENGLVNLINHLPADRYRHAVVALTEVSAF-RKRIQRPDVAFYALHKQP--GKDVAVYPQLYR 75 (374)
T ss_pred ceEEEEeCC---CCCCcHHHHHHHHHhhccccccceEEEEcCCCChh-HHHHHhcCceEEEeCCCC--CCChHHHHHHHH
Confidence 489999875 45699999999999999999999988875432210 000011111111111111 112344567888
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCE-EEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPI-VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIG 277 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~-v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~ 277 (526)
++++.+||+||+|+... ..+.+.++..++|. +++.|........ ... .....+.+...+.+|.++++|+..+
T Consensus 76 ~l~~~~~Divh~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~i~vs~~~~ 148 (374)
T TIGR03088 76 LLRQLRPDIVHTRNLAA--LEAQLPAALAGVPARIHGEHGRDVFDLD--GSN---WKYRWLRRLYRPLIHHYVAVSRDLE 148 (374)
T ss_pred HHHHhCCCEEEEcchhH--HHHHHHHHhcCCCeEEEeecCcccccch--hhH---HHHHHHHHHHHhcCCeEEEeCHHHH
Confidence 99999999999997532 22344556667775 3334432111000 001 1122345556678999999999999
Q ss_pred HHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C----
Q 009759 278 KDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P---- 349 (526)
Q Consensus 278 ~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~---- 349 (526)
+.+.+.++.+.+++.+|+||+|.+.+.+.........+......+.++++++||+.+.||++.++++++.+ +
T Consensus 149 ~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~ 228 (374)
T TIGR03088 149 DWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAE 228 (374)
T ss_pred HHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCccccc
Confidence 99988776677899999999999888654322211111222345678999999999999999999998765 2
Q ss_pred CcEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 350 EARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
+++|+++|+|+..+.+++.++.. ++.+.|.. +|+.++|+.||++|+||..||+|++++|||+||+|||+++.||
T Consensus 229 ~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g 306 (374)
T TIGR03088 229 RLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG 306 (374)
T ss_pred ceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC
Confidence 68999999998888888877654 47888865 7899999999999999999999999999999999999999999
Q ss_pred CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Q 009759 426 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 426 ~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~ 495 (526)
..|++ +++.+|++++++|+++++++|.+++++++.+.++++++++.+ ++|+|+.+++++. ++|+++
T Consensus 307 ~~e~i---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~y~~~ 373 (374)
T TIGR03088 307 NPELV---QHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYA-GLYDQL 373 (374)
T ss_pred cHHHh---cCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHh
Confidence 99999 889999999999999999999999999999999999999998 6899999999997 899876
No 15
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=2e-40 Score=339.12 Aligned_cols=356 Identities=20% Similarity=0.266 Sum_probs=255.3
Q ss_pred CCccCchHHHHHHHHHHHHHCCC--eEEEEEeCCCCC-------cc----ccCceeccccccCCCcccc---ccchhccc
Q 009759 130 FSYVSGYKNRFQNFIKYLREMGD--EVMVVTTHEGVP-------QE----FYGAKLIGSRSFPCPWYQK---VPLSLALS 193 (526)
Q Consensus 130 ~~~~gG~~~~~~~l~~~L~~~G~--~V~vi~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 193 (526)
.|..||.+.++.+|+++|.++|| +|+|++...... .. ..++.+.++...+...... ......+.
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELA 101 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHH
Confidence 37789999999999999999997 999999542210 00 1223333332211111000 00111233
Q ss_pred HHHHHHHHhc--CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccc-----ccccc---c--hHHHHHHH
Q 009759 194 PRIISEVARF--KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT-----FSWLV---K--PMWLVIKF 261 (526)
Q Consensus 194 ~~l~~~l~~~--~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~-----~~~~~---~--~~~~~~~~ 261 (526)
..+.+.+++. +|||||+|.+. ..+.+.++++..++|+|++.|+.......... ..... . .....++.
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~-~~~~~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYAD-AGYVGARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchh-HHHHHHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 4566677653 79999999864 34556667788899999999975321110000 00000 0 01124677
Q ss_pred HhhcCcEEEeCChhHHH-HHHHhcccCCCcEEEeecCCCCCCCCCCcccH---HHH---HhhcCCCCCCcEEEEEecccc
Q 009759 262 LHRAADLTLVPSVAIGK-DLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMR---WRLSNGEPDKPLIVHVGRLGV 334 (526)
Q Consensus 262 ~~~~ad~ii~~S~~~~~-~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~---~~~---~~~~~~~~~~~~i~~vG~l~~ 334 (526)
.++.+|.++++|..... .+....+.+.+++.+||||+|.+.|.+..... ..+ .+.. ..++.++|+|+||+.+
T Consensus 181 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vGrl~~ 259 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFL-KDPEKPPILAISRPDR 259 (439)
T ss_pred HHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhc-cccCCcEEEEEcCCcc
Confidence 89999999999976543 34444445678999999999999887643211 111 1122 2456779999999999
Q ss_pred cccHHHHHHHHHhCC----CcEEE-EEeCCccHHH-----------HHHHhcC----CCeEEecccChhhHHHHHHcC--
Q 009759 335 EKSLDFLKRVMDRLP----EARIA-FIGDGPYREE-----------LEKMFTG----MPAVFTGMLLGEELSQAYASG-- 392 (526)
Q Consensus 335 ~Kg~~~li~a~~~l~----~~~l~-ivG~g~~~~~-----------l~~l~~~----~~V~~~g~v~~~~l~~~~~~a-- 392 (526)
.||++.+++|++.++ +.+++ ++|+|+..+. +..++++ .+|.|.|+++.+++.++|+.|
T Consensus 260 ~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~ 339 (439)
T TIGR02472 260 RKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAAR 339 (439)
T ss_pred cCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 999999999998642 24444 5677654221 2233332 259999999999999999987
Q ss_pred --cEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 009759 393 --DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQA 470 (526)
Q Consensus 393 --Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~ 470 (526)
|++|+||..|+||++++||||||+|||+|+.||..|++ .++.+|++++++|+++++++|.++++|++.+++++++
T Consensus 340 ~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 416 (439)
T TIGR02472 340 SRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDII---ANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRN 416 (439)
T ss_pred cCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHh---cCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred HHHHH-HhCCHHHHHHHHHHHH
Q 009759 471 ARQEM-EKYDWRAATRTIRNEQ 491 (526)
Q Consensus 471 a~~~~-~~fs~~~~~~~~~~~l 491 (526)
+++.+ ++|||+.++++++ ++
T Consensus 417 a~~~~~~~fsw~~~~~~~~-~l 437 (439)
T TIGR02472 417 GIEGVRRHYSWDAHVEKYL-RI 437 (439)
T ss_pred HHHHHHHhCCHHHHHHHHH-HH
Confidence 99998 6899999999997 44
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=2.4e-40 Score=335.25 Aligned_cols=367 Identities=23% Similarity=0.360 Sum_probs=273.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhc-ccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLA-LSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 197 (526)
|||++++..+|....||.+.++.+++++|.+. ++|.|++..... ....++.+.+...... .......+. ....+.
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 76 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR-FDSEGLTVKGYRPWSE--LKEANKALGTFSVDLA 76 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch-hcCCCeEEEEecChhh--ccchhhhhhhhhHHHH
Confidence 89999998877334599999999999999987 777777765432 1122223322211100 000000000 011111
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccccc-ccccccchHHHHHHHHhhcCcEEEeCChhH
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY-TFSWLVKPMWLVIKFLHRAADLTLVPSVAI 276 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~ 276 (526)
......++|+||+|.+... +.+.++++..++|+|++.|+..+...... ...........+++..++.+|.++++|+.+
T Consensus 77 ~~~~~~~~divh~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 155 (388)
T TIGR02149 77 MANDPVDADVVHSHTWYTF-LAGHLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGM 155 (388)
T ss_pred HhhCCCCCCeEeecchhhh-hHHHHHHHhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHH
Confidence 1122347999999985433 33455567789999999999754321110 001111233456788899999999999999
Q ss_pred HHHHHHhc-ccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC-CCcEEE
Q 009759 277 GKDLEAAR-VTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIA 354 (526)
Q Consensus 277 ~~~l~~~~-~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l-~~~~l~ 354 (526)
++.+.+.+ +.+..++.+++||+|.+.+.+. .....+.+++. .++.++++|+||+.+.||++.++++++.+ ++++++
T Consensus 156 ~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~l~ 233 (388)
T TIGR02149 156 REDILKYYPDLDPEKVHVIYNGIDTKEYKPD-DGNVVLDRYGI-DRSRPYILFVGRITRQKGVPHLLDAVHYIPKDVQVV 233 (388)
T ss_pred HHHHHHHcCCCCcceEEEecCCCChhhcCCC-chHHHHHHhCC-CCCceEEEEEcccccccCHHHHHHHHHHHhhcCcEE
Confidence 99988775 4456789999999999888664 33445555554 45677899999999999999999999988 478999
Q ss_pred EEeCCccH----HHHHHHhcCC-----CeEEe-cccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 355 FIGDGPYR----EELEKMFTGM-----PAVFT-GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 355 ivG~g~~~----~~l~~l~~~~-----~V~~~-g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
++|+|+.. +.+++...+. +|.+. |.++.+++..+|+.||++|+||..|++|++++|||++|+|||+++.|
T Consensus 234 i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~ 313 (388)
T TIGR02149 234 LCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG 313 (388)
T ss_pred EEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC
Confidence 98876543 3444443322 36654 67999999999999999999999999999999999999999999999
Q ss_pred CCCceecccCCCceeEeeCCCCH------HHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDL------DDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~------~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l 496 (526)
+..|++ +++.+|++++.+|. ++++++|.++++|++.++++++++++.+ ++|||+.+++++. ++|++++
T Consensus 314 ~~~e~i---~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~-~~y~~~~ 388 (388)
T TIGR02149 314 GIPEVV---VDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTV-EMYRKVL 388 (388)
T ss_pred CHHHHh---hCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhhC
Confidence 999999 88899999999888 9999999999999999999999999998 6899999999997 8998763
No 17
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=4.3e-40 Score=349.53 Aligned_cols=378 Identities=17% Similarity=0.216 Sum_probs=275.6
Q ss_pred CCCCCCcEEEEEeccCC----------CCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCc-------c-------
Q 009759 113 ENNSRPRRIALFVEPSP----------FSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQ-------E------- 166 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p----------~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~-------~------- 166 (526)
+...++|.|++|+-+.- -++.||...++.+|+++|+++| |+|.++|....... .
T Consensus 164 ~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~ 243 (1050)
T TIGR02468 164 QQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPR 243 (1050)
T ss_pred hcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccc
Confidence 44677899999955432 1456788899999999999998 89999996543211 0
Q ss_pred -----------ccCceeccccccCCC-ccccc---cchhcccHHHHHHHHh--------------cCCCEEEECCCchHH
Q 009759 167 -----------FYGAKLIGSRSFPCP-WYQKV---PLSLALSPRIISEVAR--------------FKPDIIHASSPGIMV 217 (526)
Q Consensus 167 -----------~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~l~~--------------~~pDiV~~~~~~~~~ 217 (526)
..+..+++++.-+.. +..+- +....+...+.+.+.+ ..||+||+|++. .+
T Consensus 244 ~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~-sG 322 (1050)
T TIGR02468 244 SSENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYAD-AG 322 (1050)
T ss_pred ccccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcch-HH
Confidence 012333333322221 11111 1111222233333321 149999999864 55
Q ss_pred HHHHHHHHhcCCCEEEEEecCCcccccc---cc---cc-----cccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhccc
Q 009759 218 FGALIIAKLLCVPIVMSYHTHVPVYIPR---YT---FS-----WLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVT 286 (526)
Q Consensus 218 ~~~~~~~~~~~~p~v~~~h~~~~~~~~~---~~---~~-----~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~ 286 (526)
..+..+++..++|+|+|.|......... .. .. +........++.++..||.||+.|..+.+++...|..
T Consensus 323 ~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 323 DSAALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred HHHHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 6677888999999999999753221110 00 00 0111223467889999999999999999876555421
Q ss_pred ----------------------CCCcEEEeecCCCCCCCCCCcccH--------------------HHHHhhcCCCCCCc
Q 009759 287 ----------------------AANKIRIWKKGVDSESFHPRFRSS--------------------EMRWRLSNGEPDKP 324 (526)
Q Consensus 287 ----------------------~~~ki~vi~ngid~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 324 (526)
...++.|||||+|.+.|.|..... .++ ++ +..++++
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~-~~~pdkp 480 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RF-FTNPRKP 480 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHH-hh-cccCCCc
Confidence 123899999999999998742211 111 11 1256778
Q ss_pred EEEEEecccccccHHHHHHHHHhCC------CcEEEEEeCCccH-----------HHHHHHhcCC----CeEEecccChh
Q 009759 325 LIVHVGRLGVEKSLDFLKRVMDRLP------EARIAFIGDGPYR-----------EELEKMFTGM----PAVFTGMLLGE 383 (526)
Q Consensus 325 ~i~~vG~l~~~Kg~~~li~a~~~l~------~~~l~ivG~g~~~-----------~~l~~l~~~~----~V~~~g~v~~~ 383 (526)
+|+|+||+.+.||++.|++|+..++ ++. +|+|.++.. ..+..++++. +|.|.|+++.+
T Consensus 481 vIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~e 559 (1050)
T TIGR02468 481 MILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQS 559 (1050)
T ss_pred EEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHH
Confidence 9999999999999999999998873 344 466865432 3344555543 59999999999
Q ss_pred hHHHHHHcC----cEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 384 ELSQAYASG----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 384 ~l~~~~~~a----Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
++..+|+.| |++|+||.+|+||++++||||||+|||+|+.||..|++ .++.+|+++++.|+++|+++|.++++
T Consensus 560 dvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII---~~g~nGlLVdP~D~eaLA~AL~~LL~ 636 (1050)
T TIGR02468 560 DVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH---RVLDNGLLVDPHDQQAIADALLKLVA 636 (1050)
T ss_pred HHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh---ccCCcEEEECCCCHHHHHHHHHHHhh
Confidence 999999988 69999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 009759 460 NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 498 (526)
Q Consensus 460 d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~~ 498 (526)
|++.+++|++++++.+++|+|+.++++++ ..|..+..+
T Consensus 637 Dpelr~~m~~~gr~~v~~FSWe~ia~~yl-~~i~~~~~~ 674 (1050)
T TIGR02468 637 DKQLWAECRQNGLKNIHLFSWPEHCKTYL-SRIASCRPR 674 (1050)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHhcc
Confidence 99999999999999998899999999998 677776543
No 18
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=6.6e-40 Score=340.45 Aligned_cols=368 Identities=21% Similarity=0.283 Sum_probs=267.5
Q ss_pred EEEEEecc-CCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc--cCc----------------------eecc
Q 009759 120 RIALFVEP-SPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF--YGA----------------------KLIG 174 (526)
Q Consensus 120 kIliv~~~-~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~--~~~----------------------~~~~ 174 (526)
||++++.. .|+...||.+.++..|+++|+++||+|.|+++.++..... ... ...+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 68899644 6888999999999999999999999999999876532210 000 0001
Q ss_pred cccc--CCCcc-cc--------c------cchhcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHHh-----cCCC
Q 009759 175 SRSF--PCPWY-QK--------V------PLSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAKL-----LCVP 230 (526)
Q Consensus 175 ~~~~--~~~~~-~~--------~------~~~~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~-----~~~p 230 (526)
+..+ ..+.+ .+ . .....+.....+++++ .+|||||+|+++......++.... .++|
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 1111 00000 00 0 0001122344455554 799999999987554443333322 4899
Q ss_pred EEEEEecCCcccccccc------cc---------cccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh---------ccc
Q 009759 231 IVMSYHTHVPVYIPRYT------FS---------WLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA---------RVT 286 (526)
Q Consensus 231 ~v~~~h~~~~~~~~~~~------~~---------~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~---------~~~ 286 (526)
+|+++|+.......... .. ........+++..+..+|.++++|+.+++.+.+. ...
T Consensus 161 ~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~ 240 (476)
T cd03791 161 TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRA 240 (476)
T ss_pred EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHh
Confidence 99999996533211100 00 0001122567888999999999999999988642 122
Q ss_pred CCCcEEEeecCCCCCCCCCCccc------------------HHHHHhhcCC-CCCCcEEEEEecccccccHHHHHHHHHh
Q 009759 287 AANKIRIWKKGVDSESFHPRFRS------------------SEMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDR 347 (526)
Q Consensus 287 ~~~ki~vi~ngid~~~~~~~~~~------------------~~~~~~~~~~-~~~~~~i~~vG~l~~~Kg~~~li~a~~~ 347 (526)
...++.+|+||+|.+.|.+.... ..++.+++.. .++.++|+|+||+.++||++.++++++.
T Consensus 241 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 320 (476)
T cd03791 241 RAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPE 320 (476)
T ss_pred ccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHH
Confidence 45799999999999999875432 2345555543 4678999999999999999999999988
Q ss_pred C--CCcEEEEEeCCcc--HHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 348 L--PEARIAFIGDGPY--REELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 348 l--~~~~l~ivG~g~~--~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
+ .+++|+++|+|+. .+.++++..+ .++.+.+..+.+++..+|+.||++|+||.+|+||++++|||+||+|||++
T Consensus 321 l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~ 400 (476)
T cd03791 321 LLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVR 400 (476)
T ss_pred HHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEEC
Confidence 7 3589999998853 4566666654 36877766677788899999999999999999999999999999999999
Q ss_pred CCCCCCceecccCCCc------eeEeeCCCCHHHHHHHHHHhhh---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 422 RAGGIPDIIPEDQDGK------IGYLFNPGDLDDCLSKLEPLLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~~------~g~~~~~~d~~~la~ai~~ll~---d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
++||+.|++ .++. +|+++++.|+++++++|.++++ +++.+.++++++.+ ++|||+.++++++ ++|
T Consensus 401 ~~gg~~e~v---~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~y 474 (476)
T cd03791 401 ATGGLADTV---IDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMA--QDFSWDRSAKEYL-ELY 474 (476)
T ss_pred cCCCccceE---eCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHH
Confidence 999999999 7766 9999999999999999999875 66777777766543 4799999999997 787
Q ss_pred H
Q 009759 493 N 493 (526)
Q Consensus 493 ~ 493 (526)
+
T Consensus 475 ~ 475 (476)
T cd03791 475 R 475 (476)
T ss_pred h
Confidence 5
No 19
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=2.4e-39 Score=322.81 Aligned_cols=350 Identities=15% Similarity=0.170 Sum_probs=257.5
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEEeCCCCCc---------------c-------ccCcee
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVTTHEGVPQ---------------E-------FYGAKL 172 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~---------------~-------~~~~~~ 172 (526)
.++|||+|+++.++ |..+|.......++.+|+++| |+|+++.+...... + +.+..+
T Consensus 2 ~~~mrIaivTdt~l-P~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v 80 (462)
T PLN02846 2 QKKQHIAIFTTASL-PWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERI 80 (462)
T ss_pred CCCCEEEEEEcCCC-CCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeE
Confidence 45699999999876 899999999999999999999 79999998653110 0 012344
Q ss_pred ccccccCCCcccc-c---cchhcccHHHHHHHHhcCCCEEEECCCchHHHH--HHHHHHhcCCCEEEEEecCCccccccc
Q 009759 173 IGSRSFPCPWYQK-V---PLSLALSPRIISEVARFKPDIIHASSPGIMVFG--ALIIAKLLCVPIVMSYHTHVPVYIPRY 246 (526)
Q Consensus 173 ~~~~~~~~~~~~~-~---~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~ 246 (526)
..+..++++.+.. + .........+.+.+++++|||||++++...++. +..++++.++ +|.++|..+..+.+.+
T Consensus 81 ~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~tyHT~y~~Y~~~~ 159 (462)
T PLN02846 81 SFLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRL-VIGIVHTNYLEYVKRE 159 (462)
T ss_pred EEecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCc-EEEEECCChHHHHHHh
Confidence 5666666666555 1 122224568999999999999999999877774 4455555555 8889999877665543
Q ss_pred ccccccchHH-HHHHHHh-hcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCC--
Q 009759 247 TFSWLVKPMW-LVIKFLH-RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD-- 322 (526)
Q Consensus 247 ~~~~~~~~~~-~~~~~~~-~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~-- 322 (526)
...+...... .+.+++. ..+|.++++|....+ +.+ .+.+.++|||.+.|.+.... .+... . ..+
T Consensus 160 ~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~~-------~~i~~v~GVd~~~f~~~~~~--~~~~~-~-~~~~~ 227 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YPR-------SIICNVHGVNPKFLEIGKLK--LEQQK-N-GEQAF 227 (462)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hhh-------CEEecCceechhhcCCCccc--Hhhhc-C-CCCCc
Confidence 3212122111 1222222 238999999986655 432 23445689999988766432 22211 1 223
Q ss_pred CcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCccHHHHHHHhcCCC--e-EEecccChhhHHHHHHcCcEE
Q 009759 323 KPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMP--A-VFTGMLLGEELSQAYASGDVF 395 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~~~~~l~~l~~~~~--V-~~~g~v~~~~l~~~~~~aDv~ 395 (526)
.+.++|+||+..+||++.++++++.+ ++++|+|+|+|+.++++++++.+.+ + .+.|.. +..++|+.+|++
T Consensus 228 ~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~---~~~~~~~~~DvF 304 (462)
T PLN02846 228 TKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRD---HADPLFHDYKVF 304 (462)
T ss_pred ceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCC---CHHHHHHhCCEE
Confidence 34689999999999999999999865 6899999999999999999888654 2 456654 344799999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 475 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~ 475 (526)
|+||..|++|++++||||+|+|||+++.++ .+++ .++.+|++++ |.+++++++.+++.++. ..++..+ .
T Consensus 305 v~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v---~~~~ng~~~~--~~~~~a~ai~~~l~~~~--~~~~~~a---~ 373 (462)
T PLN02846 305 LNPSTTDVVCTTTAEALAMGKIVVCANHPS-NEFF---KQFPNCRTYD--DGKGFVRATLKALAEEP--APLTDAQ---R 373 (462)
T ss_pred EECCCcccchHHHHHHHHcCCcEEEecCCC-ccee---ecCCceEecC--CHHHHHHHHHHHHccCc--hhHHHHH---H
Confidence 999999999999999999999999999997 5888 7899999885 89999999999998532 2222222 2
Q ss_pred HhCCHHHHHHHHHHHHHHH
Q 009759 476 EKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 476 ~~fs~~~~~~~~~~~ly~~ 494 (526)
++|||+.++++++ .+|+-
T Consensus 374 ~~~SWe~~~~~l~-~~~~~ 391 (462)
T PLN02846 374 HELSWEAATERFL-RVADL 391 (462)
T ss_pred HhCCHHHHHHHHH-HHhcc
Confidence 5999999999998 67653
No 20
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.4e-38 Score=323.30 Aligned_cols=353 Identities=29% Similarity=0.407 Sum_probs=267.7
Q ss_pred CccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc-----ccCceeccccccCCCcccc---ccchhcccHHHHHHHHh
Q 009759 131 SYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE-----FYGAKLIGSRSFPCPWYQK---VPLSLALSPRIISEVAR 202 (526)
Q Consensus 131 ~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~ 202 (526)
+..||.+.++.+++++|+++||+|+|++........ ..+..+..+...+...... ......+...+.+.+++
T Consensus 18 ~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (398)
T cd03800 18 ADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRR 97 (398)
T ss_pred CCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHh
Confidence 567999999999999999999999999865432211 1122222222111111110 11111234456666777
Q ss_pred c--CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccccccccc--ccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 203 F--KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSW--LVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 203 ~--~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
. +||+||+|.+.. .+.+..+++..++|+|++.|+............+ ........++.+++.+|.++++|+..++
T Consensus 98 ~~~~~Div~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 176 (398)
T cd03800 98 EGGRPDLIHAHYWDS-GLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAE 176 (398)
T ss_pred cCCCccEEEEecCcc-chHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHH
Confidence 6 999999997543 3445666788899999999986543222111111 1122234567789999999999999999
Q ss_pred HHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCC----CcEEE
Q 009759 279 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP----EARIA 354 (526)
Q Consensus 279 ~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~----~~~l~ 354 (526)
.+.+.+..+..++.+++||+|.+.+.+.......+..... ..++++|+|+||+...||++.+++++..+. +++|+
T Consensus 177 ~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~ 255 (398)
T cd03800 177 ELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLR-DPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLV 255 (398)
T ss_pred HHHHHccccccccEEECCCCCccceecccchhhHHHhhcc-CCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEE
Confidence 9988876566679999999999887665433322333322 456789999999999999999999998873 79999
Q ss_pred EEeCCccH------HHHHHHhcC----CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 355 FIGDGPYR------EELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 355 ivG~g~~~------~~l~~l~~~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
++|++... ..++.+.+. .++.++|+++.+++..+|+.||++++||..|++|++++|||++|+|||+++.+
T Consensus 256 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~ 335 (398)
T cd03800 256 IVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVG 335 (398)
T ss_pred EEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCC
Confidence 99976532 223333332 36999999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 488 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~ 488 (526)
+..+++ +++.+|++++++|+++++++|.++++|++.++++++++++.+ ++|||+.++++++
T Consensus 336 ~~~e~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 336 GPRDIV---VDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CHHHHc---cCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 999999 888899999999999999999999999999999999999999 6899999999885
No 21
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=3.4e-38 Score=316.60 Aligned_cols=343 Identities=21% Similarity=0.282 Sum_probs=256.9
Q ss_pred EEEEE-eccCCCCc--cCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc----cCceeccccccCCCcc--cc--ccc
Q 009759 120 RIALF-VEPSPFSY--VSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF----YGAKLIGSRSFPCPWY--QK--VPL 188 (526)
Q Consensus 120 kIliv-~~~~p~~~--~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~--~~~ 188 (526)
||+++ ++-.|.|. .||++.++.++++.|. ++|++++......... .+..+..+........ .+ ...
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLD 80 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccC
Confidence 77777 44445555 8899999999999994 3999999765431221 2223322211111000 10 001
Q ss_pred hhcccHHHHHHHHh---cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhc
Q 009759 189 SLALSPRIISEVAR---FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 265 (526)
Q Consensus 189 ~~~~~~~l~~~l~~---~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (526)
...+...+...+.. .++|+||+|+.. .+...+..+..+.|+++++|+.+. ...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vi~v~~~~--~~~~~~~~~~~~~~~v~~~h~~~~-------------------~~~~~~ 139 (380)
T PRK15484 81 PLPYSQRILNIAHKFTITKDSVIVIHNSM--KLYRQIRERAPQAKLVMHMHNAFE-------------------PELLDK 139 (380)
T ss_pred chhHHHHHHHHHHhcCCCCCcEEEEeCcH--HhHHHHHhhCCCCCEEEEEecccC-------------------hhHhcc
Confidence 23334445555543 469999999843 222334455668899999997532 123456
Q ss_pred CcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHH
Q 009759 266 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVM 345 (526)
Q Consensus 266 ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~ 345 (526)
++.++++|+..++.+.+.+ +..++.+||||+|.+.+.+. .....+.+++. ..+..+|+|+||+.+.||++.+++|+
T Consensus 140 ~~~ii~~S~~~~~~~~~~~--~~~~i~vIpngvd~~~~~~~-~~~~~~~~~~~-~~~~~~il~~Grl~~~Kg~~~Li~A~ 215 (380)
T PRK15484 140 NAKIIVPSQFLKKFYEERL--PNADISIVPNGFCLETYQSN-PQPNLRQQLNI-SPDETVLLYAGRISPDKGILLLMQAF 215 (380)
T ss_pred CCEEEEcCHHHHHHHHhhC--CCCCEEEecCCCCHHHcCCc-chHHHHHHhCC-CCCCeEEEEeccCccccCHHHHHHHH
Confidence 8999999999999988765 45789999999998877654 23334445543 34668899999999999999999999
Q ss_pred HhC----CCcEEEEEeCCcc---------HHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCCC-CCCcHHHH
Q 009759 346 DRL----PEARIAFIGDGPY---------REELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSES-ETLGLVVL 409 (526)
Q Consensus 346 ~~l----~~~~l~ivG~g~~---------~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~-e~~~~~il 409 (526)
+.+ ++++|+|+|+|+. .+.+++++.+ .++.++|+++.+++..+|+.||++|+||.. |+||++++
T Consensus 216 ~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~l 295 (380)
T PRK15484 216 EKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAV 295 (380)
T ss_pred HHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHH
Confidence 876 7899999997642 2344445443 369999999999999999999999999985 99999999
Q ss_pred HHHHcCCcEEEeCCCCCCceecccCCCceeE-eeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHH
Q 009759 410 EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY-LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTI 487 (526)
Q Consensus 410 EAma~G~PvI~~~~gg~~e~v~~~~~~~~g~-~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~ 487 (526)
||||||+|||+++.||..|++ .++.+|+ ++++.|+++++++|.++++|++. .++++++++.+ ++|+|+.+++++
T Consensus 296 EAma~G~PVI~s~~gg~~Eiv---~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~ 371 (380)
T PRK15484 296 EAMAAGKPVLASTKGGITEFV---LEGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRF 371 (380)
T ss_pred HHHHcCCCEEEeCCCCcHhhc---ccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999 8899998 56788999999999999999985 78999999987 699999999999
Q ss_pred HHHHHHHH
Q 009759 488 RNEQYNAA 495 (526)
Q Consensus 488 ~~~ly~~~ 495 (526)
+ ++|++.
T Consensus 372 ~-~~l~~~ 378 (380)
T PRK15484 372 E-EQIHNW 378 (380)
T ss_pred H-HHHHHh
Confidence 7 777654
No 22
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.9e-38 Score=314.65 Aligned_cols=351 Identities=20% Similarity=0.210 Sum_probs=253.3
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc---cccCceeccccccCCCccccccchhcccHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
||+++......+..||.+.++.+++++|.++||+|+|++....... ...++.+..+. ................+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~ 77 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIP---APEIGGLGTIIYDILAI 77 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcC---CCCccchhhhHHHHHHH
Confidence 6889866543477899999999999999999999999997654332 22233322222 11111111111111122
Q ss_pred HHHH-HhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChh
Q 009759 197 ISEV-ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 275 (526)
Q Consensus 197 ~~~l-~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~ 275 (526)
.+.+ .+.++|++|...+.. .....+.+..+.|++++.|+..... ...........+..++..++.+|.++++|+.
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~v~~~h~~~~~~--~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 153 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAI--APFLPLLRLKGKKVVVNMDGLEWKR--AKWGRPAKRYLKFGEKLAVKFADRLIADSPG 153 (363)
T ss_pred HHHHhccCCeEEEEecCccH--HHHHHHHHhcCCCEEEEccCcceee--cccccchhHHHHHHHHHHHhhccEEEeCCHH
Confidence 2222 234455555554433 2233344556899999999853211 1111122233455677788999999999999
Q ss_pred HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCC-CcEEE
Q 009759 276 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIA 354 (526)
Q Consensus 276 ~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~-~~~l~ 354 (526)
.++.+...++. .. .+|+||+|...+.+ ......... ..+...++++|++.+.||++.++++++++. +++|+
T Consensus 154 ~~~~~~~~~~~--~~-~~i~ngv~~~~~~~---~~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~l~ 225 (363)
T cd04955 154 IKEYLKEKYGR--DS-TYIPYGADHVVSSE---EDEILKKYG--LEPGRYYLLVGRIVPENNIDDLIEAFSKSNSGKKLV 225 (363)
T ss_pred HHHHHHHhcCC--CC-eeeCCCcChhhcch---hhhhHHhcC--CCCCcEEEEEecccccCCHHHHHHHHHhhccCceEE
Confidence 99999766653 23 89999999886644 112222222 234456899999999999999999999985 69999
Q ss_pred EEeCCccHHHHHHHhc-----CCCeEEecccChhhHHHHHHcCcEEEecCCC-CCCcHHHHHHHHcCCcEEEeCCCCCCc
Q 009759 355 FIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMSSGIPVVGVRAGGIPD 428 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~-----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~-e~~~~~ilEAma~G~PvI~~~~gg~~e 428 (526)
++|+|+....+.+.+. ..+|+++|+++++++.++|.+||++++|+.. |++|++++|||++|+|||+++.|+..|
T Consensus 226 ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e 305 (363)
T cd04955 226 IVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNRE 305 (363)
T ss_pred EEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccce
Confidence 9998754433333222 3479999999999999999999999999998 999999999999999999999999999
Q ss_pred eecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 009759 429 IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 429 ~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~-~fs~~~~~~~~~~~ly~ 493 (526)
++ ++ +|++++++|. ++++|.+++++++.+.++++++++.++ +|||+.++++++ ++|+
T Consensus 306 ~~---~~--~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~ 363 (363)
T cd04955 306 VL---GD--KAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYE-ELYK 363 (363)
T ss_pred ee---cC--CeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 99 44 7888886665 999999999999999999999999985 799999999997 7763
No 23
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=1.9e-38 Score=318.80 Aligned_cols=346 Identities=28% Similarity=0.365 Sum_probs=267.6
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccC--CCc--cccccchhcccHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFP--CPW--YQKVPLSLALSPR 195 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~ 195 (526)
||+++.+.++ ++.+.++.++++.|. ||+|++++........... ...++.... ... .............
T Consensus 1 ~~~~~~~~~~----~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (367)
T cd05844 1 RVLIFRPLLL----APSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGA-LAVRLADLAGGKAGLRLGALRLLTGSAPQ 73 (367)
T ss_pred CEEEEeCCCC----CCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcc-cceeeeecccchhHHHHHHHHhccccccH
Confidence 5788887655 348899999999995 7888888865432211111 111111110 000 0011112334456
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChh
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 275 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~ 275 (526)
+..++++.+||+||+|... ....+..+++..++|++++.|+.....................++.+++.+|.++++|+.
T Consensus 74 ~~~~~~~~~~dvvh~~~~~-~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 152 (367)
T cd05844 74 LRRLLRRHRPDLVHAHFGF-DGVYALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQF 152 (367)
T ss_pred HHHHHHhhCCCEEEeccCc-hHHHHHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHH
Confidence 6667889999999998754 334455567888999999999754322211111111223345677788999999999999
Q ss_pred HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCc
Q 009759 276 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEA 351 (526)
Q Consensus 276 ~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~ 351 (526)
+++.+.+.+ .+..++.+++||+|.+.+.+.. ...+...++|+|++.+.||++.+++++..+ +++
T Consensus 153 ~~~~~~~~~-~~~~~i~vi~~g~d~~~~~~~~-----------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~ 220 (367)
T cd05844 153 IRDRLLALG-FPPEKVHVHPIGVDTAKFTPAT-----------PARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEV 220 (367)
T ss_pred HHHHHHHcC-CCHHHeEEecCCCCHHhcCCCC-----------CCCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCe
Confidence 999998874 3667899999999988776542 134567899999999999999999999766 589
Q ss_pred EEEEEeCCccHHHHHHHhcC----CCeEEecccChhhHHHHHHcCcEEEecCC------CCCCcHHHHHHHHcCCcEEEe
Q 009759 352 RIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 352 ~l~ivG~g~~~~~l~~l~~~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~------~e~~~~~ilEAma~G~PvI~~ 421 (526)
+|+++|+|+..+++++++++ .+|+++|+++++++..+|+.||++|+||. .||+|++++|||++|+|||++
T Consensus 221 ~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s 300 (367)
T cd05844 221 RLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVAT 300 (367)
T ss_pred EEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEe
Confidence 99999999888888877765 36999999999999999999999999996 489999999999999999999
Q ss_pred CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 009759 422 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 488 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~ 488 (526)
+.++..|++ .++.+|++++++|+++++++|.++++|++.+++++.++++.+ ++|||+..++++.
T Consensus 301 ~~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~ 365 (367)
T cd05844 301 RHGGIPEAV---EDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLE 365 (367)
T ss_pred CCCCchhhe---ecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 999999999 889999999999999999999999999999999999999998 5899999999885
No 24
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=3e-38 Score=317.01 Aligned_cols=362 Identities=31% Similarity=0.517 Sum_probs=276.9
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||++++..+| |..||.+.++..++++|.++||+|++++.....................................+...
T Consensus 1 kil~~~~~~~-p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03817 1 KIGIFTDTYL-PQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIII 79 (374)
T ss_pred CeeEeehhcc-CCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHH
Confidence 6899988766 788999999999999999999999999976543322111111111000011112222223334455666
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccccccc--ccccchHH-HHHHHHhhcCcEEEeCChhH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF--SWLVKPMW-LVIKFLHRAADLTLVPSVAI 276 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ad~ii~~S~~~ 276 (526)
+++.+||+||++.+......+..+++..++|++++.|+.+..+...... ........ ..++.+++.+|.++++|+..
T Consensus 80 ~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~ 159 (374)
T cd03817 80 LKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKI 159 (374)
T ss_pred HhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHH
Confidence 8889999999998755555566677888999999999876533221111 11111122 56788899999999999999
Q ss_pred HHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcE
Q 009759 277 GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEAR 352 (526)
Q Consensus 277 ~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~ 352 (526)
++.+...+. ..++.+++||+|...+.+.... ..+..... ..+++.++++|++.+.||++.++++++.+ ++++
T Consensus 160 ~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~ 235 (374)
T cd03817 160 ADLLREYGV--KRPIEVIPTGIDLDRFEPVDGD-DERRKLGI-PEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVK 235 (374)
T ss_pred HHHHHhcCC--CCceEEcCCccchhccCccchh-HHHHhcCC-CCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeE
Confidence 999887653 3569999999999887665322 22333332 45678899999999999999999999876 5799
Q ss_pred EEEEeCCccHHHHHHHhcC----CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCc
Q 009759 353 IAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 428 (526)
Q Consensus 353 l~ivG~g~~~~~l~~l~~~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e 428 (526)
|+++|.|+..+.+++++++ .+|.++|+++++++..+|+.||++++|+..|++|++++|||++|+|||+++.|+..+
T Consensus 236 l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~ 315 (374)
T cd03817 236 LVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPD 315 (374)
T ss_pred EEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhh
Confidence 9999999888888777643 369999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 009759 429 IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 429 ~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~ 494 (526)
++ .++.+|+++++++. +++++|.+++++++.++++++++++.+++++ .++++. ++|++
T Consensus 316 ~i---~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 373 (374)
T cd03817 316 LV---ADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKVE-KLYEE 373 (374)
T ss_pred he---ecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHHH-HHHhc
Confidence 99 88899999998777 9999999999999999999999999997766 444553 55543
No 25
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=2.6e-38 Score=320.43 Aligned_cols=351 Identities=20% Similarity=0.265 Sum_probs=250.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCcc------ccccch----
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWY------QKVPLS---- 189 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---- 189 (526)
|||||...+| .....|+++|.++||+|++++......... ++++..+...+.... ......
T Consensus 1 ~il~~~~~~p--------~~~~~la~~L~~~G~~v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T cd03818 1 RILFVHQNFP--------GQFRHLAPALAAQGHEVVFLTEPNAAPPPG-GVRVVRYRPPRGPTSGTHPYLREFEEAVLRG 71 (396)
T ss_pred CEEEECCCCc--------hhHHHHHHHHHHCCCEEEEEecCCCCCCCC-CeeEEEecCCCCCCCCCCccchhHHHHHHHH
Confidence 6899988777 346789999999999999999876543222 344444332221110 000000
Q ss_pred hcccHHHHHH-HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcc------cccccccccc-cchHH---HH
Q 009759 190 LALSPRIISE-VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV------YIPRYTFSWL-VKPMW---LV 258 (526)
Q Consensus 190 ~~~~~~l~~~-l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~------~~~~~~~~~~-~~~~~---~~ 258 (526)
......+..+ .+.++||+||+|...... ..+.....++|+|.++|-.+.. +......... ....+ ..
T Consensus 72 ~~~~~~~~~~~~~~~~pdvi~~h~~~~~~--~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (396)
T cd03818 72 QAVARALLALRAKGFRPDVIVAHPGWGET--LFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNAL 149 (396)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccchh--hhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhH
Confidence 1111122222 234689999999743222 2222333578998877532211 1111111100 01111 12
Q ss_pred HHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHH-HHHhhcCCCCCCcEEEEEec-ccccc
Q 009759 259 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE-MRWRLSNGEPDKPLIVHVGR-LGVEK 336 (526)
Q Consensus 259 ~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vG~-l~~~K 336 (526)
....++.+|.++++|+..++.+...+ .+++.+|+||+|.+.|.+...... .+.... ...+.++|+|+|| +.+.|
T Consensus 150 ~~~~~~~ad~vi~~s~~~~~~~~~~~---~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~-~~~~~~~i~~vgR~l~~~K 225 (396)
T cd03818 150 ILLALAQADAGVSPTRWQRSTFPAEL---RSRISVIHDGIDTDRLRPDPQARLRLPNGRV-LTPGDEVITFVARNLEPYR 225 (396)
T ss_pred hHHHHHhCCEEECCCHHHHhhCcHhh---ccceEEeCCCccccccCCCchhhhccccccc-CCCCCeEEEEECCCccccc
Confidence 44678999999999999999887654 268999999999998876532211 111111 1346778999997 99999
Q ss_pred cHHHHHHHHHhC----CCcEEEEEeCCc------------cHHH-HHHHhc---CCCeEEecccChhhHHHHHHcCcEEE
Q 009759 337 SLDFLKRVMDRL----PEARIAFIGDGP------------YREE-LEKMFT---GMPAVFTGMLLGEELSQAYASGDVFV 396 (526)
Q Consensus 337 g~~~li~a~~~l----~~~~l~ivG~g~------------~~~~-l~~l~~---~~~V~~~g~v~~~~l~~~~~~aDv~v 396 (526)
|++.+++|+..+ ++++|+|+|++. +.+. ++++.. ..+|+|+|+++++++..+|+.||+++
T Consensus 226 g~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v 305 (396)
T cd03818 226 GFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHV 305 (396)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEE
Confidence 999999999765 689999999632 1222 233332 34799999999999999999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 009759 397 MPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 476 (526)
Q Consensus 397 ~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~ 476 (526)
+||..|++|++++||||||+|||+++.||..|++ .++.+|++++++|+++++++|.++++|++.+.+|++++++.++
T Consensus 306 ~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~ 382 (396)
T cd03818 306 YLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVI---TDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTAL 382 (396)
T ss_pred EcCcccccchHHHHHHHCCCCEEEcCCCCchhhc---ccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 8899999999999999999999999999999999999999995
Q ss_pred -hCCHHHHHHHHH
Q 009759 477 -KYDWRAATRTIR 488 (526)
Q Consensus 477 -~fs~~~~~~~~~ 488 (526)
+|+|+.++++++
T Consensus 383 ~~fs~~~~~~~~~ 395 (396)
T cd03818 383 RYDLLSVCLPRQL 395 (396)
T ss_pred HhccHHHHHHHHh
Confidence 699999998875
No 26
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.1e-38 Score=315.82 Aligned_cols=344 Identities=28% Similarity=0.373 Sum_probs=263.2
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc---CceeccccccCCCccccccchhcccHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY---GAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
||+++...++ |..||.+..+..++++|.++||+|++++.......... +......... .... .......+
T Consensus 1 kil~i~~~~~-p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~ 73 (357)
T cd03795 1 RVLHVGKFYP-PDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSL-----LNVA-STPFSPSF 73 (357)
T ss_pred CeeEecCCCC-CCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecc-----cccc-cccccHHH
Confidence 6889987665 55899999999999999999999999997654332211 1111111110 0000 00011111
Q ss_pred HHH--HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 197 ISE--VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 197 ~~~--l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
... +...++|+||++.+......... ....++|+++++|+..... .........+++.+++.+|.++++|+
T Consensus 74 ~~~~~~~~~~~Dii~~~~~~~~~~~~~~-~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~d~vi~~s~ 146 (357)
T cd03795 74 FKQLKKLAKKADVIHLHFPNPLADLALL-LLPRKKPVVVHWHSDIVKQ------KLLLKLYRPLQRRFLRRADAIVATSP 146 (357)
T ss_pred HHHHHhcCCCCCEEEEecCcchHHHHHH-HhccCceEEEEEcChhhcc------chhhhhhhHHHHHHHHhcCEEEeCcH
Confidence 111 45679999999986544333222 2236889999999743211 12223344567778999999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEE
Q 009759 275 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIA 354 (526)
Q Consensus 275 ~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ 354 (526)
...+.+...+.. ..++.++|||+|...+.+...... .......+.+.++|+|++.+.||++.++++++++.+++|+
T Consensus 147 ~~~~~~~~~~~~-~~~~~~i~~gi~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~l~ 222 (357)
T cd03795 147 NYAETSPVLRRF-RDKVRVIPLGLDPARYPRPDALEE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALPDAPLV 222 (357)
T ss_pred HHHHHHHHhcCC-ccceEEecCCCChhhcCCcchhhh---HhhcCCCCCcEEEEecccccccCHHHHHHHHHhccCcEEE
Confidence 999988776653 378999999999987765432111 1111245678999999999999999999999999889999
Q ss_pred EEeCCccHHHHHHHhcC----CCeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCc
Q 009759 355 FIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPD 428 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e 428 (526)
++|+|+..+.+++++++ .+|.++|+++++++.++|+.||++++||. .|++|++++|||++|+|||+++.++..+
T Consensus 223 i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~ 302 (357)
T cd03795 223 IVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS 302 (357)
T ss_pred EEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh
Confidence 99999888888777632 37999999999999999999999999986 5999999999999999999999999999
Q ss_pred eecccCC-CceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHH
Q 009759 429 IIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAAT 484 (526)
Q Consensus 429 ~v~~~~~-~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~ 484 (526)
.+ .+ +.+|++++++|+++++++|.++++|++.++++++++++.+ ++|||+.++
T Consensus 303 ~i---~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 303 YV---NLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HH---hhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 88 65 8899999999999999999999999999999999999999 589999763
No 27
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=3.1e-38 Score=315.58 Aligned_cols=339 Identities=28% Similarity=0.385 Sum_probs=269.0
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccC-ceeccccccCCCccccccchhcccHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYG-AKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+++..+| +|.+.++.++++.|.++||+|.+++........... ...... .................+.+
T Consensus 1 ki~~~~~~~~----~~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 73 (355)
T cd03799 1 KIAYLVKEFP----RLSETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELA---RTRYLARSLALLAQALVLAR 73 (355)
T ss_pred CEEEECCCCC----CcchHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccc---chHHHHHHHHHHHHHHHHHH
Confidence 6999998765 447899999999999999999999976543221110 000000 00001111122333445666
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
.+++.++|+||+|..........+.++..++|++++.|+........ ...++..++.+|.++++|+..++
T Consensus 74 ~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~vi~~s~~~~~ 143 (355)
T cd03799 74 ELRRLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRSPD----------AIDLDEKLARADFVVAISEYNRQ 143 (355)
T ss_pred HHHhcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEecccccccCc----------hHHHHHHHhhCCEEEECCHHHHH
Confidence 67788999999998755555555566666899999999753221110 03567788999999999999999
Q ss_pred HHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEE
Q 009759 279 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIA 354 (526)
Q Consensus 279 ~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ 354 (526)
.+.+.++.+..++.+++||+|.+.+.+.... ...++..|+|+|++.+.||++.+++++..+ ++++++
T Consensus 144 ~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~~---------~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~ 214 (355)
T cd03799 144 QLIRLLGCDPDKIHVVHCGVDLERFPPRPPP---------PPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLD 214 (355)
T ss_pred HHHHhcCCCcccEEEEeCCcCHHHcCCcccc---------ccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEE
Confidence 9999855567899999999998877654200 245677899999999999999999999877 479999
Q ss_pred EEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCC------CCCcHHHHHHHHcCCcEEEeCCC
Q 009759 355 FIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSES------ETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~------e~~~~~ilEAma~G~PvI~~~~g 424 (526)
++|.++..+.+++.+++. +|.+.|+++.+++..+|++||++++|+.. |++|++++|||++|+|||+++.|
T Consensus 215 i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~ 294 (355)
T cd03799 215 IVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS 294 (355)
T ss_pred EEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC
Confidence 999998888877766543 69999999999999999999999999998 99999999999999999999999
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTI 487 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~ 487 (526)
+.++++ +++.+|++++++|+++++++|.+++++++.+.++++++++.+ ++|+|+..++++
T Consensus 295 ~~~~~i---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l 355 (355)
T cd03799 295 GIPELV---EDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAARL 355 (355)
T ss_pred Ccchhh---hCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999 888899999999999999999999999999999999999998 589999988753
No 28
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=7.2e-38 Score=326.69 Aligned_cols=378 Identities=19% Similarity=0.266 Sum_probs=262.4
Q ss_pred CCCcEEEEEeccC--------CCCccCchHHHHHHHHHHH--------HHCCC----eEEEEEeCCCCC---------cc
Q 009759 116 SRPRRIALFVEPS--------PFSYVSGYKNRFQNFIKYL--------REMGD----EVMVVTTHEGVP---------QE 166 (526)
Q Consensus 116 ~~~mkIliv~~~~--------p~~~~gG~~~~~~~l~~~L--------~~~G~----~V~vi~~~~~~~---------~~ 166 (526)
...|||++++.+. ..++.||...++.+++++| +++|| +|.|+|...... +.
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~ 332 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK 332 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc
Confidence 5569999997765 2234688888999999975 68899 777998653311 11
Q ss_pred c---cCceeccccccCCC------cccc---ccchhcccHHHHHHHH---hcCCCEEEECCCchHHHHHHHHHHhcCCCE
Q 009759 167 F---YGAKLIGSRSFPCP------WYQK---VPLSLALSPRIISEVA---RFKPDIIHASSPGIMVFGALIIAKLLCVPI 231 (526)
Q Consensus 167 ~---~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~l~~~l~---~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~ 231 (526)
. .+..+.+++.-+.. +..+ .+....+...+.+.+. ..+||+||+|.+.. .+.+..+++..++|.
T Consensus 333 ~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~-glva~lla~~lgVP~ 411 (784)
T TIGR02470 333 VYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDG-NLVASLLARKLGVTQ 411 (784)
T ss_pred ccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCch-HHHHHHHHHhcCCCE
Confidence 1 12233332222211 0111 1111222233444333 23699999999754 455678899999999
Q ss_pred EEEEecCCcccccccccccc--cchH-----HHHHHHHhhcCcEEEeCChhHHH----HHHHh-----------c----c
Q 009759 232 VMSYHTHVPVYIPRYTFSWL--VKPM-----WLVIKFLHRAADLTLVPSVAIGK----DLEAA-----------R----V 285 (526)
Q Consensus 232 v~~~h~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~ad~ii~~S~~~~~----~l~~~-----------~----~ 285 (526)
+.+.|.............+. ...+ ...+..++..||.||+.|..+.. .+..+ + +
T Consensus 412 v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnG 491 (784)
T TIGR02470 412 CTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHG 491 (784)
T ss_pred EEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecC
Confidence 99999764322111111111 0011 12255788899999999976533 22211 1 1
Q ss_pred --cCCCcEEEeecCCCCCCCCCCcccHH------------------HHHhhcC-CCCCCcEEEEEecccccccHHHHHHH
Q 009759 286 --TAANKIRIWKKGVDSESFHPRFRSSE------------------MRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRV 344 (526)
Q Consensus 286 --~~~~ki~vi~ngid~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~i~~vG~l~~~Kg~~~li~a 344 (526)
.+..|+.+||+|+|.+.|.|...... .+..++. ..+++++|+++||+.+.||++.+++|
T Consensus 492 id~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA 571 (784)
T TIGR02470 492 IDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVEC 571 (784)
T ss_pred ccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHH
Confidence 14579999999999998876533211 1123332 24578899999999999999999999
Q ss_pred HHhC----CCcEEEEEeCCcc------------HHHHHHHhcCC----CeEEeccc-ChhhHHHHHH----cCcEEEecC
Q 009759 345 MDRL----PEARIAFIGDGPY------------REELEKMFTGM----PAVFTGML-LGEELSQAYA----SGDVFVMPS 399 (526)
Q Consensus 345 ~~~l----~~~~l~ivG~g~~------------~~~l~~l~~~~----~V~~~g~v-~~~~l~~~~~----~aDv~v~ps 399 (526)
+.++ ++++|+|+|++.. .+.+.+++++. +|.|+|++ +..++.++|+ .+|++|+||
T Consensus 572 ~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS 651 (784)
T TIGR02470 572 YGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPA 651 (784)
T ss_pred HHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECC
Confidence 9765 3589999997532 12344455543 59999985 4455555554 358999999
Q ss_pred CCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhh----hCHHHHHHHHHHHHHHH
Q 009759 400 ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL----YNQELRETMGQAARQEM 475 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll----~d~~~~~~~~~~a~~~~ 475 (526)
.+|+||++++||||||+|||+|+.||..|++ .++.+|+++++.|+++++++|.+++ .|++.++++++++++.+
T Consensus 652 ~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV---~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV 728 (784)
T TIGR02470 652 LYEAFGLTVLEAMTCGLPTFATRFGGPLEII---QDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRI 728 (784)
T ss_pred cccCCCHHHHHHHHcCCCEEEcCCCCHHHHh---cCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 8999999999999999999999876 69999999999999998
Q ss_pred -HhCCHHHHHHHHHHHHHHHHHHHH
Q 009759 476 -EKYDWRAATRTIRNEQYNAAIWFW 499 (526)
Q Consensus 476 -~~fs~~~~~~~~~~~ly~~~l~~~ 499 (526)
++|||+.++++++ .+. .+-..|
T Consensus 729 ~~~FSW~~~A~~ll-~l~-~~~~~~ 751 (784)
T TIGR02470 729 YEKYTWKIYSERLL-TLA-GIYGFW 751 (784)
T ss_pred HHhCCHHHHHHHHH-HHH-hhhhHh
Confidence 6899999999997 443 555566
No 29
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.3e-38 Score=323.03 Aligned_cols=357 Identities=19% Similarity=0.240 Sum_probs=256.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc----cC-ceeccccc-cCCCccccccchhcc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF----YG-AKLIGSRS-FPCPWYQKVPLSLAL 192 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~----~~-~~~~~~~~-~~~~~~~~~~~~~~~ 192 (526)
||||++... ...||.++++..+++.|.++||+|++++........+ .+ ..+..... .+.............
T Consensus 1 mkIl~~~~~---~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 77 (392)
T cd03805 1 LRVAFIHPD---LGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAY 77 (392)
T ss_pred CeEEEECCC---CCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHH
Confidence 899999653 4579999999999999999999999999754321111 11 11110000 000000000000000
Q ss_pred cHHHH-----HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccc--cccccccchHHHHHHHHhhc
Q 009759 193 SPRII-----SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPR--YTFSWLVKPMWLVIKFLHRA 265 (526)
Q Consensus 193 ~~~l~-----~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 265 (526)
...+. ..++..++|+||++....... +.....+.|++++.|......... ............+++..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 154 (392)
T cd03805 78 LRMLYLALYLLLLPDEKYDVFIVDQVSACVP---LLKLFSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGM 154 (392)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcCcchHHH---HHHHhcCCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhC
Confidence 11111 134557999999987543221 222333489999999432211110 00011122344667788999
Q ss_pred CcEEEeCChhHHHHHHHhcccCC-CcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHH
Q 009759 266 ADLTLVPSVAIGKDLEAARVTAA-NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 344 (526)
Q Consensus 266 ad~ii~~S~~~~~~l~~~~~~~~-~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a 344 (526)
+|.++++|+..++.+.+.++... .++.+|+||+|.+.+.+..... .... .....+.++++++|++.+.||++.++++
T Consensus 155 ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~grl~~~Kg~~~ll~a 232 (392)
T cd03805 155 ADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP-DPGL-LIPKSGKKTFLSINRFERKKNIALAIEA 232 (392)
T ss_pred ceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc-cccc-cccCCCceEEEEEeeecccCChHHHHHH
Confidence 99999999999998887654222 3345999999998776543221 1111 1134677889999999999999999999
Q ss_pred HHhC-------CCcEEEEEeCCcc--------HHHHHHHhcC-----CCeEEecccChhhHHHHHHcCcEEEecCCCCCC
Q 009759 345 MDRL-------PEARIAFIGDGPY--------REELEKMFTG-----MPAVFTGMLLGEELSQAYASGDVFVMPSESETL 404 (526)
Q Consensus 345 ~~~l-------~~~~l~ivG~g~~--------~~~l~~l~~~-----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~ 404 (526)
++++ ++++|+++|+|+. .+++++++++ .+|.|+|+++.+++..+|+.||++++||..|++
T Consensus 233 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~ 312 (392)
T cd03805 233 FAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHF 312 (392)
T ss_pred HHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCC
Confidence 9876 4789999998754 2566666655 369999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHH
Q 009759 405 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAA 483 (526)
Q Consensus 405 ~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~ 483 (526)
|++++|||+||+|||+++.||..|++ .++.+|++++. |+++++++|.+++++++.++++++++++.+ ++|+|+.+
T Consensus 313 g~~~lEAma~G~PvI~s~~~~~~e~i---~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~ 388 (392)
T cd03805 313 GIVPLEAMYAGKPVIACNSGGPLETV---VDGETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAF 388 (392)
T ss_pred CchHHHHHHcCCCEEEECCCCcHHHh---ccCCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999 88889999876 899999999999999999999999999998 58999999
Q ss_pred HHHH
Q 009759 484 TRTI 487 (526)
Q Consensus 484 ~~~~ 487 (526)
++++
T Consensus 389 ~~~~ 392 (392)
T cd03805 389 AERL 392 (392)
T ss_pred hhhC
Confidence 8764
No 30
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=9.4e-38 Score=313.88 Aligned_cols=350 Identities=15% Similarity=0.089 Sum_probs=242.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccc---------cCCCccccc-cc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRS---------FPCPWYQKV-PL 188 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~ 188 (526)
||||.|... ...||+++.+.+|++.|.++||+|.++.................... ......+.. ..
T Consensus 1 mkil~i~~~---l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (405)
T PRK10125 1 MNILQFNVR---LAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRD 77 (405)
T ss_pred CeEEEEEee---ecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchh
Confidence 899999764 55699999999999999999999999987654333211111100000 000000000 01
Q ss_pred hhcccHHHHHHH-HhcCCCEEEECCCchHH--HHHH------HHHHhcCCCEEEEEecCCccc--------ccc------
Q 009759 189 SLALSPRIISEV-ARFKPDIIHASSPGIMV--FGAL------IIAKLLCVPIVMSYHTHVPVY--------IPR------ 245 (526)
Q Consensus 189 ~~~~~~~l~~~l-~~~~pDiV~~~~~~~~~--~~~~------~~~~~~~~p~v~~~h~~~~~~--------~~~------ 245 (526)
.+.....+.+.+ ++++|||||+|+.+... +..+ +..+..++|+|+|.||.++.. ...
T Consensus 78 ~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~ 157 (405)
T PRK10125 78 LFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQ 157 (405)
T ss_pred hcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCC
Confidence 123344556666 58899999999865321 1111 113455799999999988552 000
Q ss_pred -------cccccc------cchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHH
Q 009759 246 -------YTFSWL------VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEM 312 (526)
Q Consensus 246 -------~~~~~~------~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~ 312 (526)
+..... ....+...+.+.+.++.++++|++.++.+.+.++ ..++.+|+||+|.+.+.+.......
T Consensus 158 ~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~~~~~~~ 235 (405)
T PRK10125 158 KCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAILAELPPV 235 (405)
T ss_pred CCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCccccccccccccc
Confidence 000000 0111222334455678999999999999887654 4789999999997533221111000
Q ss_pred HHhhcCCCCCCcEEEEEecc--cccccHHHHHHHHHhC-CCcEEEEEeCCccHHHHHHHhcCCCeEEecccC-hhhHHHH
Q 009759 313 RWRLSNGEPDKPLIVHVGRL--GVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQA 388 (526)
Q Consensus 313 ~~~~~~~~~~~~~i~~vG~l--~~~Kg~~~li~a~~~l-~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~-~~~l~~~ 388 (526)
+ ...++++++++|+. .+.||++.+++|+..+ ++++|+++|.|+... ..++.++|+.. .+++.++
T Consensus 236 ~-----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~~-------~~~v~~~g~~~~~~~l~~~ 303 (405)
T PRK10125 236 R-----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPFT-------AGNVVNHGFETDKRKLMSA 303 (405)
T ss_pred c-----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCccc-------ccceEEecCcCCHHHHHHH
Confidence 0 13466789999984 4789999999999988 579999999875321 23688899874 4789999
Q ss_pred HHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHH--
Q 009759 389 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET-- 466 (526)
Q Consensus 389 ~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~-- 466 (526)
|++||++|+||..|++|++++||||||+|||+|++||++|++ .++ +|++++++|+++|++++ +++..++
T Consensus 304 y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv---~~~-~G~lv~~~d~~~La~~~-----~~~~~~~~~ 374 (405)
T PRK10125 304 LNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVL---QKS-GGKTVSEEEVLQLAQLS-----KPEIAQAVF 374 (405)
T ss_pred HHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhE---eCC-cEEEECCCCHHHHHhcc-----CHHHHHHhh
Confidence 999999999999999999999999999999999999999999 654 89999999999999854 4443333
Q ss_pred --HHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Q 009759 467 --MGQAARQEM-EKYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 467 --~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~ 495 (526)
+.+++++.+ ++|||+.++++++ ++|+++
T Consensus 375 ~~~~~~~r~~~~~~fs~~~~~~~y~-~lY~~l 405 (405)
T PRK10125 375 GTTLAEFSQRSRAAYSGQQMLEEYV-NFYQNL 405 (405)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHH-HHHHhC
Confidence 234577776 5899999999998 899763
No 31
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=2.8e-37 Score=308.71 Aligned_cols=363 Identities=33% Similarity=0.499 Sum_probs=283.9
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccc-cCCCccccccchhcccHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRS-FPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 198 (526)
||++++..++ +..||+..++..+++.|.+.||+|.+++................... ..................+.+
T Consensus 1 kI~ii~~~~~-~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03801 1 KILLVTPEYP-PSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRR 79 (374)
T ss_pred CeeEEecccC-CccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHH
Confidence 6889988765 34799999999999999999999999998765433221111110000 000111111222334456777
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
.+++.++|+||++.+....... ..++..++|++++.|+......... ............+..++.+|.+++.|+...+
T Consensus 80 ~~~~~~~Dii~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 157 (374)
T cd03801 80 LLRRERFDVVHAHDWLALLAAA-LAARLLGIPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRIIAVSEATRE 157 (374)
T ss_pred HhhhcCCcEEEEechhHHHHHH-HHHHhcCCcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH
Confidence 7888899999999976554433 5677789999999999765433221 1122334456778889999999999999999
Q ss_pred HHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEE
Q 009759 279 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIA 354 (526)
Q Consensus 279 ~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ 354 (526)
.+.+.+..+..++.+++||++...+.+.. ...+.... ...+.+.++++|++...||++.+++++..+ ++++|+
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~ 234 (374)
T cd03801 158 ELRELGGVPPEKITVIPNGVDTERFRPAP--RAARRRLG-IPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLV 234 (374)
T ss_pred HHHhcCCCCCCcEEEecCcccccccCccc--hHHHhhcC-CcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEE
Confidence 99998865557999999999998876542 11111111 245678899999999999999999999877 369999
Q ss_pred EEeCCccHHHHHHHhc----CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCcee
Q 009759 355 FIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII 430 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v 430 (526)
++|.+...+.++++++ ..+|.+.|+++.+++.++|+.||++++|+..|++|++++|||++|+|||+++.++..+++
T Consensus 235 i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~ 314 (374)
T cd03801 235 IVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVV 314 (374)
T ss_pred EEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHHh
Confidence 9998887777776652 337999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 009759 431 PEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQY 492 (526)
Q Consensus 431 ~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly 492 (526)
.++.+|+++++.|+++++++|.+++.|++.++++++++++.+ ++|+|+.+++++. ++|
T Consensus 315 ---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (374)
T cd03801 315 ---EDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTE-EVY 373 (374)
T ss_pred ---cCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHH-Hhh
Confidence 788999999999999999999999999999999999999776 6899999999997 555
No 32
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=6e-38 Score=314.36 Aligned_cols=355 Identities=23% Similarity=0.309 Sum_probs=270.9
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||++++...+....||++.++.+++++|.+.||+|++++.........................................
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 68888776542268999999999999999999999999987653332211111110001111111111122223344455
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
+...++|+||++....... +..++|+++++||..+..................++.+++.+|.++++|+..++.
T Consensus 81 ~~~~~~Dii~~~~~~~~~~------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~ 154 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRD 154 (365)
T ss_pred hhhcCCCeeeecccccCcc------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHH
Confidence 5567999999998654322 6679999999999776554443333334455677888999999999999999999
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCC----CcEEEE
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP----EARIAF 355 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~----~~~l~i 355 (526)
+.+.++.+..++.+++||+|...+....... +.... ...++.+|+++|++.+.||++.+++++..++ +++|++
T Consensus 155 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i 231 (365)
T cd03809 155 LLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE--VLRAL-YLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVI 231 (365)
T ss_pred HHHHhCcCHHHEEeeccccCccccCCCchHH--HHHHh-cCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEE
Confidence 9998765667999999999998876543222 22221 3557789999999999999999999998883 479999
Q ss_pred EeCCccH-HHHHH----HhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCcee
Q 009759 356 IGDGPYR-EELEK----MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII 430 (526)
Q Consensus 356 vG~g~~~-~~l~~----l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v 430 (526)
+|.+... ..... .....+|+++|+++++++.++|+.||++++|+..|++|++++|||++|+|||+++.|+..|++
T Consensus 232 ~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 311 (365)
T cd03809 232 VGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVA 311 (365)
T ss_pred ecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcccee
Confidence 9975422 22222 222347999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 431 PEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 431 ~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
+.+|++++.+|.++++++|.+++.|++.+.++++++++.+++|+|++++++++
T Consensus 312 -----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 312 -----GDAALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred -----cCceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35688899999999999999999999999999999998889999999999885
No 33
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=3.1e-37 Score=305.97 Aligned_cols=325 Identities=19% Similarity=0.261 Sum_probs=249.6
Q ss_pred cEEEEEeccC-C--CCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 119 RRIALFVEPS-P--FSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 119 mkIliv~~~~-p--~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
|||+++++.+ | .+..||.+.++..++++|.+.||+|++++.......... .........................
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPL--VPVVPEPLRLDAPGRDRAEAEALAL 78 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccce--eeccCCCcccccchhhHhhHHHHHH
Confidence 8999998764 1 357899999999999999999999999997664322110 0000000000001111122334456
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChh
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 275 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~ 275 (526)
+.+.+++.+||+||+|......+ +++..++|+|++.|+........ ........+.++++|+.
T Consensus 79 ~~~~~~~~~~Divh~~~~~~~~~----~~~~~~~~~v~~~h~~~~~~~~~-------------~~~~~~~~~~~~~~s~~ 141 (335)
T cd03802 79 AERALAAGDFDIVHNHSLHLPLP----FARPLPVPVVTTLHGPPDPELLK-------------LYYAARPDVPFVSISDA 141 (335)
T ss_pred HHHHHhcCCCCEEEecCcccchh----hhcccCCCEEEEecCCCCcccch-------------HHHhhCcCCeEEEecHH
Confidence 77888889999999998755433 46778999999999865422111 23345678889999999
Q ss_pred HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEEE
Q 009759 276 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF 355 (526)
Q Consensus 276 ~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~i 355 (526)
.++.+... .++.+|+||+|.+.+.+. ..++..++|+|++.+.||++.+++++++. +++|++
T Consensus 142 ~~~~~~~~-----~~~~vi~ngvd~~~~~~~-------------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~~-~~~l~i 202 (335)
T cd03802 142 QRRPWPPL-----PWVATVHNGIDLDDYPFR-------------GPKGDYLLFLGRISPEKGPHLAIRAARRA-GIPLKL 202 (335)
T ss_pred HHhhcccc-----cccEEecCCcChhhCCCC-------------CCCCCEEEEEEeeccccCHHHHHHHHHhc-CCeEEE
Confidence 88876543 689999999999888652 34566899999999999999999998875 799999
Q ss_pred EeCCccHHHHHHHhc-----CCCeEEecccChhhHHHHHHcCcEEEecCC-CCCCcHHHHHHHHcCCcEEEeCCCCCCce
Q 009759 356 IGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDI 429 (526)
Q Consensus 356 vG~g~~~~~l~~l~~-----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~-~e~~~~~ilEAma~G~PvI~~~~gg~~e~ 429 (526)
+|.|+..+.+..... ..+|.++|+++++++..+|+.+|++++|+. .|++|++++||||||+|||+++.||..|+
T Consensus 203 ~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~ 282 (335)
T cd03802 203 AGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEV 282 (335)
T ss_pred EeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhh
Confidence 999876555444322 347999999999999999999999999998 59999999999999999999999999999
Q ss_pred ecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 009759 430 IPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 430 v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~ 493 (526)
+ .++.+|+++++ +++++++|.++.... .+++++.+ ++|||+.++++++ ++|+
T Consensus 283 i---~~~~~g~l~~~--~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~-~~y~ 335 (335)
T cd03802 283 V---EDGVTGFLVDS--VEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYL-ALYR 335 (335)
T ss_pred e---eCCCcEEEeCC--HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 9 88889999984 999999999986543 23556666 6899999999997 7773
No 34
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=3.6e-37 Score=309.15 Aligned_cols=332 Identities=25% Similarity=0.349 Sum_probs=257.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+++... ...||.+.++..++++|.++||+|++++.... .+.+
T Consensus 1 MkIl~~~~~---~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~--------------------------------~~~~ 45 (365)
T cd03825 1 MKVLHLNTS---DISGGAARAAYRLHRALQAAGVDSTMLVQEKK--------------------------------ALIS 45 (365)
T ss_pred CeEEEEecC---CCCCcHHHHHHHHHHHHHhcCCceeEEEeecc--------------------------------hhhh
Confidence 899999763 55699999999999999999999999987543 3344
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHh-cCCCEEEEEecCCcccccccc----cc-----------------cccchHH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKL-LCVPIVMSYHTHVPVYIPRYT----FS-----------------WLVKPMW 256 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~----~~-----------------~~~~~~~ 256 (526)
.+++.+||+||+|......+....+.+. .++|+|+++|+.++....... .. ......+
T Consensus 46 ~~~~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (365)
T cd03825 46 KIEIINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIW 125 (365)
T ss_pred ChhcccCCEEEEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHH
Confidence 5667799999998754332222222232 499999999996543211000 00 0111111
Q ss_pred -HHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccc-
Q 009759 257 -LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV- 334 (526)
Q Consensus 257 -~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~- 334 (526)
.........++.++++|+..++.+.+.+..+..++.++|||+|.+.+.+. .....+...+. ..+..++++.|+...
T Consensus 126 ~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 203 (365)
T cd03825 126 RRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPR-DKREARKRLGL-PADKKIILFGAVGGTD 203 (365)
T ss_pred HHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCC-cHHHHHHHhCC-CCCCeEEEEEecCCCc
Confidence 11222235678899999999999988775567899999999999887654 33444444443 345566667776654
Q ss_pred -cccHHHHHHHHHhC-----CCcEEEEEeCCccHHHHHHHhcCCCeEEecccC-hhhHHHHHHcCcEEEecCCCCCCcHH
Q 009759 335 -EKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESETLGLV 407 (526)
Q Consensus 335 -~Kg~~~li~a~~~l-----~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~-~~~l~~~~~~aDv~v~ps~~e~~~~~ 407 (526)
.||++.++++++.+ ++++++++|.++..... ....+|.++|+++ .+++..+|+.||++++||..|++|++
T Consensus 204 ~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~ 280 (365)
T cd03825 204 PRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP---DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNT 280 (365)
T ss_pred cccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc---cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHH
Confidence 89999999999876 46899999987644332 1234799999998 67899999999999999999999999
Q ss_pred HHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHH
Q 009759 408 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRT 486 (526)
Q Consensus 408 ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~ 486 (526)
++|||++|+|||+++.|+..+++ .++.+|++++..|+++++++|.++++|++.+.++++++++.+ ++|||+.++++
T Consensus 281 ~~Eam~~g~PvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 357 (365)
T cd03825 281 AIEALACGTPVVAFDVGGIPDIV---DHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKR 357 (365)
T ss_pred HHHHHhcCCCEEEecCCCChhhe---eCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999 788899999999999999999999999999999999999998 58999999999
Q ss_pred HHHHHHHH
Q 009759 487 IRNEQYNA 494 (526)
Q Consensus 487 ~~~~ly~~ 494 (526)
++ ++|++
T Consensus 358 ~~-~~y~~ 364 (365)
T cd03825 358 YL-SLYEE 364 (365)
T ss_pred HH-HHHhh
Confidence 97 88876
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.3e-37 Score=323.93 Aligned_cols=364 Identities=16% Similarity=0.160 Sum_probs=261.6
Q ss_pred CCCc-EEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--------------eEEEEEeC--CCC--Ccc---ccCceec
Q 009759 116 SRPR-RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--------------EVMVVTTH--EGV--PQE---FYGAKLI 173 (526)
Q Consensus 116 ~~~m-kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--------------~V~vi~~~--~~~--~~~---~~~~~~~ 173 (526)
.++. ||+++... ...||.++++..|+.+|.+.|+ .|.++... .+. ... ..++.+.
T Consensus 278 ~~~~~rIl~vi~s---l~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~ 354 (694)
T PRK15179 278 ESFVGPVLMINGS---LGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVS 354 (694)
T ss_pred CCCcceEEEEeCC---CCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEE
Confidence 3445 89999875 5569999999999999999954 34444321 110 100 1233333
Q ss_pred cccccCCCcc----------cc----c-cchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE-EEec
Q 009759 174 GSRSFPCPWY----------QK----V-PLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM-SYHT 237 (526)
Q Consensus 174 ~~~~~~~~~~----------~~----~-~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~-~~h~ 237 (526)
.+...+.... .+ . .........+.+++++.+|||||+|......+ +.++++..++|+|+ +.|+
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~l-g~lAa~~~gvPvIv~t~h~ 433 (694)
T PRK15179 355 VYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFA-CALAALLAGVPRIVLSVRT 433 (694)
T ss_pred EeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHH-HHHHHHHcCCCEEEEEeCC
Confidence 2221111100 00 0 01233457888999999999999998765433 44556778899876 4455
Q ss_pred CCcccccccccccccchHHHHHHH-HhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhh
Q 009759 238 HVPVYIPRYTFSWLVKPMWLVIKF-LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRL 316 (526)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~ 316 (526)
..+..... .....+..+.+. ....++.++++|...++.+.+.++.+.+++.+|+||+|...|.+.......+..+
T Consensus 434 ~~~~~~~~----~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~ 509 (694)
T PRK15179 434 MPPVDRPD----RYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQF 509 (694)
T ss_pred Cccccchh----HHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhh
Confidence 33211111 111111111121 1223456777888888888776666778999999999988776432222111111
Q ss_pred cC-CCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHH
Q 009759 317 SN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQ 387 (526)
Q Consensus 317 ~~-~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~ 387 (526)
.. ...+.++|+++||+.+.||++.+++++..+ ++++|+|+|+|+..+.+++++++. +|+|.|++ +++..
T Consensus 510 ~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~--~dv~~ 587 (694)
T PRK15179 510 DARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLS--RRVGY 587 (694)
T ss_pred ccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCc--chHHH
Confidence 11 133567899999999999999999999764 789999999999888888887754 59999998 58999
Q ss_pred HHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCC--HHHHHHHHHHhhhCHHHHH
Q 009759 388 AYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRE 465 (526)
Q Consensus 388 ~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d--~~~la~ai~~ll~d~~~~~ 465 (526)
+|+.+|++|+||.+|++|++++|||+||+|||+|++||..|++ .++.+|++++++| +++++++|.+++.+.....
T Consensus 588 ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV---~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~ 664 (694)
T PRK15179 588 WLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAV---QEGVTGLTLPADTVTAPDVAEALARIHDMCAADP 664 (694)
T ss_pred HHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHc---cCCCCEEEeCCCCCChHHHHHHHHHHHhChhccH
Confidence 9999999999999999999999999999999999999999999 8999999998776 4689999988888766667
Q ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 009759 466 TMGQAARQEM-EKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 466 ~~~~~a~~~~-~~fs~~~~~~~~~~~ly~ 493 (526)
.+++++++.+ ++|||+.++++++ ++|+
T Consensus 665 ~l~~~ar~~a~~~FS~~~~~~~~~-~lY~ 692 (694)
T PRK15179 665 GIARKAADWASARFSLNQMIASTV-RCYQ 692 (694)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 7888999998 5899999999997 8885
No 36
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=2.6e-37 Score=313.63 Aligned_cols=357 Identities=18% Similarity=0.218 Sum_probs=256.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc----ccCceeccccccCCCccccccchhc--
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE----FYGAKLIGSRSFPCPWYQKVPLSLA-- 191 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-- 191 (526)
+.||++++.. .+|.+.++..+++.|+++||+|++++........ ..++.+..+...+ .........+.
T Consensus 3 ~~~~~~~~~~-----~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 76 (415)
T cd03816 3 RKRVCVLVLG-----DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPP-QRLNKLPFLLFAP 76 (415)
T ss_pred ccEEEEEEec-----ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCc-cccccchHHHHHH
Confidence 4577777653 2677788899999999999999999976543221 1222222222111 00111111110
Q ss_pred ------ccHHHHHHHHhcCCCEEEECCCchH--HHHHHHHHHhcCCCEEEEEecCCccccccc--ccccccchHHHHHHH
Q 009759 192 ------LSPRIISEVARFKPDIIHASSPGIM--VFGALIIAKLLCVPIVMSYHTHVPVYIPRY--TFSWLVKPMWLVIKF 261 (526)
Q Consensus 192 ------~~~~l~~~l~~~~pDiV~~~~~~~~--~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~--~~~~~~~~~~~~~~~ 261 (526)
....+..+++..+||+||+|.+... ...+.++++..++|+|+++|+.+....... ......+...++++.
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (415)
T cd03816 77 LKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKL 156 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHH
Confidence 1112222455678999999875432 233555677789999999998653211110 112223455677888
Q ss_pred HhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHh----------------hcCCCCCCcE
Q 009759 262 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR----------------LSNGEPDKPL 325 (526)
Q Consensus 262 ~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 325 (526)
+++.+|.++++|+.+++.+.+ ++.+.+++.+|+||. ...|.+.......... .....++..+
T Consensus 157 ~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (415)
T cd03816 157 FGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPAL 234 (415)
T ss_pred HhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCC-HHHceeCcHHHHHHHHHhccccccccccccccceecCCCceE
Confidence 999999999999999999987 445789999999995 4455554322111110 0112334567
Q ss_pred EEEEecccccccHHHHHHHHHhC----------CCcEEEEEeCCccHHHHHHHhcCC---CeEEe-cccChhhHHHHHHc
Q 009759 326 IVHVGRLGVEKSLDFLKRVMDRL----------PEARIAFIGDGPYREELEKMFTGM---PAVFT-GMLLGEELSQAYAS 391 (526)
Q Consensus 326 i~~vG~l~~~Kg~~~li~a~~~l----------~~~~l~ivG~g~~~~~l~~l~~~~---~V~~~-g~v~~~~l~~~~~~ 391 (526)
++++||+.+.||++.+++|++.+ ++++|+|+|+|+..+++++++++. ++.+. |+++.+++.++|++
T Consensus 235 i~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~ 314 (415)
T cd03816 235 LVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS 314 (415)
T ss_pred EEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh
Confidence 88899999999999999999875 469999999999999998888755 45554 68999999999999
Q ss_pred CcEEEecCC---CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC---HHHHH
Q 009759 392 GDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN---QELRE 465 (526)
Q Consensus 392 aDv~v~ps~---~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d---~~~~~ 465 (526)
||++++|+. .+++|++++||||||+|||+++.||..|++ +++.+|++++ |+++++++|.++++| ++.++
T Consensus 315 aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv---~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~ 389 (415)
T cd03816 315 ADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELV---KHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLN 389 (415)
T ss_pred CCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHh---cCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHH
Confidence 999997532 478999999999999999999999999999 8999999995 999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Q 009759 466 TMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 466 ~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
+|++++++.. +++|+....+.+
T Consensus 390 ~m~~~~~~~~-~~~~~~~~~~~~ 411 (415)
T cd03816 390 SLKKGAQEES-ELRWDENWDRVV 411 (415)
T ss_pred HHHHHHHHhh-hcCHHHHHHHHh
Confidence 9999999887 667766655543
No 37
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=3.1e-37 Score=308.14 Aligned_cols=343 Identities=24% Similarity=0.336 Sum_probs=264.6
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccc------cCCCccc-----cccc
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRS------FPCPWYQ-----KVPL 188 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~ 188 (526)
||++++..+|....||++.++.+++++|.++||+|++++................... ....... ....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 6899998877666799999999999999999999999997654332221111100000 0000000 0011
Q ss_pred hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcE
Q 009759 189 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 268 (526)
Q Consensus 189 ~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 268 (526)
.......+.+.+++.+||+||++.+..........++..++|+++++|+.+..... ........|.
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~--------------~~~~~~~~d~ 146 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPR--------------QGLFKKGGDA 146 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecch--------------hhhhccCCCE
Confidence 12234567788888999999999875554444555677789999999986532111 1111223399
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 348 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l 348 (526)
++++|+...+.+.+.+. ...++.+++||+|...+.+... ....++.+++++|++.+.||++.++++++.+
T Consensus 147 ii~~s~~~~~~~~~~~~-~~~~~~vi~n~~~~~~~~~~~~---------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l 216 (359)
T cd03823 147 VIAPSRFLLDRYVANGL-FAEKISVIRNGIDLDRAKRPRR---------APPGGRLRFGFIGQLTPHKGVDLLLEAFKRL 216 (359)
T ss_pred EEEeCHHHHHHHHHcCC-CccceEEecCCcChhhcccccc---------CCCCCceEEEEEecCccccCHHHHHHHHHHH
Confidence 99999999999988775 3579999999999988765422 0245678899999999999999999999988
Q ss_pred C--CcEEEEEeCCccHHHHHHHh-cCCCeEEecccChhhHHHHHHcCcEEEecCC-CCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 349 P--EARIAFIGDGPYREELEKMF-TGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 349 ~--~~~l~ivG~g~~~~~l~~l~-~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~-~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
. +++|+++|.+.......... ...+|.++|+++.+++.++|+.||++++|+. .|++|++++|||++|+|||+++.+
T Consensus 217 ~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~ 296 (359)
T cd03823 217 PRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG 296 (359)
T ss_pred HhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC
Confidence 5 89999999886555443322 2347999999999999999999999999998 799999999999999999999999
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~ 493 (526)
+..+++ .++.+|++++++|+++++++|.++++|++.++++++++++..+. +.++++++ ++|+
T Consensus 297 ~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~ 358 (359)
T cd03823 297 GMAELV---RDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI---EDQAEEYL-KLYR 358 (359)
T ss_pred CHHHHh---cCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH---HHHHHHHH-HHhh
Confidence 999999 88889999999999999999999999999999999998877644 88888886 6775
No 38
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=7.2e-37 Score=306.55 Aligned_cols=358 Identities=32% Similarity=0.486 Sum_probs=281.7
Q ss_pred EEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCcee-------ccccccCCCccccccchhccc
Q 009759 121 IALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKL-------IGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 121 Iliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 193 (526)
||++++.+|....||++.++..++++|.+.||+|++++.............. .....................
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 5788887765447999999999999999999999999976543322211100 000000111111122233445
Q ss_pred HHHHHHHH--hcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 194 PRIISEVA--RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 194 ~~l~~~l~--~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
..+.+.++ ..++|+||++......+......+..++|++++.|+.......... ......+..++.+|.+++
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~~~~~~d~ii~ 154 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKR------LLRALLRRALRRADAVIA 154 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchh------hHHHHHHHHHhcCCeEEe
Confidence 56777887 8899999999766666666677788889999999997654322211 345677888999999999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC---
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 348 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l--- 348 (526)
+|+..++.+.+.+ .+..++.+++||+|...+.+...... .+.. ...+.+.++++|++.+.||++.++++++.+
T Consensus 155 ~s~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~ 230 (377)
T cd03798 155 VSEALADELKALG-IDPEKVTVIPNGVDTERFSPADRAEA--RKLG-LPEDKKVILFVGRLVPRKGIDYLIEALARLLKK 230 (377)
T ss_pred CCHHHHHHHHHhc-CCCCceEEcCCCcCcccCCCcchHHH--Hhcc-CCCCceEEEEeccCccccCHHHHHHHHHHHHhc
Confidence 9999999999876 46789999999999988876533221 1111 245678899999999999999999999887
Q ss_pred -CCcEEEEEeCCccHHHHHHHhc----CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 349 -PEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 349 -~~~~l~ivG~g~~~~~l~~l~~----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
++++++++|.++..+.+++.++ ..+|.+.|+++++++.++|++||++++|+..|++|++++|||++|+|||+++.
T Consensus 231 ~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~ 310 (377)
T cd03798 231 RPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV 310 (377)
T ss_pred CCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC
Confidence 3799999999887777777765 23799999999999999999999999999999999999999999999999999
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~ 494 (526)
++..+++ .++.+|++++++|+++++++|.+++++++. ++.+++++.+ ++|+|+..++++. ++|++
T Consensus 311 ~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~ 376 (377)
T cd03798 311 GGIPEII---TDGENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAERLL-ELYRE 376 (377)
T ss_pred CChHHHh---cCCcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHH-HHHhh
Confidence 9999999 888889999999999999999999999887 6777777777 6899999999997 67765
No 39
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=3.3e-37 Score=311.13 Aligned_cols=361 Identities=24% Similarity=0.350 Sum_probs=274.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc----------cCceeccccccCCCcc---ccc
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF----------YGAKLIGSRSFPCPWY---QKV 186 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~ 186 (526)
||+++++.++ +..||.+.++..++++|+++||+|++++......... .+.............. ...
T Consensus 1 kIl~i~~~~~-~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFP-PELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccC-CccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHH
Confidence 6899998776 4449999999999999999999999999765432221 2222222222111110 011
Q ss_pred cchhcccHHHHHHHH--hcCCCEEEECCCc-hHHHHHHHHHHhcCCCEEEEEecCCccccccccc---ccc-cchHHHHH
Q 009759 187 PLSLALSPRIISEVA--RFKPDIIHASSPG-IMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF---SWL-VKPMWLVI 259 (526)
Q Consensus 187 ~~~~~~~~~l~~~l~--~~~pDiV~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~---~~~-~~~~~~~~ 259 (526)
.....+.......+. ..+||+||++.+. .........++..++|+++++|+.++........ ... .+....++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLE 159 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHH
Confidence 112222233333443 7799999999843 3344455566667999999999976543322111 111 13455678
Q ss_pred HHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHH
Q 009759 260 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 339 (526)
Q Consensus 260 ~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~ 339 (526)
+..++.+|.++++|+..++.+... +.+..++.+++||++...+.+...... +.... ...++..++++|++...||++
T Consensus 160 ~~~~~~~d~vi~~s~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~G~~~~~k~~~ 236 (394)
T cd03794 160 RLIYRRADAIVVISPGMREYLVRR-GVPPEKISVIPNGVDLELFKPPPADES-LRKEL-GLDDKFVVLYAGNIGRAQGLD 236 (394)
T ss_pred HHHHhcCCEEEEECHHHHHHHHhc-CCCcCceEEcCCCCCHHHcCCccchhh-hhhcc-CCCCcEEEEEecCcccccCHH
Confidence 888999999999999999998843 346789999999999887765533221 22221 245678899999999999999
Q ss_pred HHHHHHHhCC---CcEEEEEeCCccHHHHHHHhc---CCCeEEecccChhhHHHHHHcCcEEEecCCCCCC-----cHHH
Q 009759 340 FLKRVMDRLP---EARIAFIGDGPYREELEKMFT---GMPAVFTGMLLGEELSQAYASGDVFVMPSESETL-----GLVV 408 (526)
Q Consensus 340 ~li~a~~~l~---~~~l~ivG~g~~~~~l~~l~~---~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~-----~~~i 408 (526)
.++++++.+. +++|+++|.|+..+.+.+++. ..+|.++|+++.+++.++|+.||++++|+..|++ |+++
T Consensus 237 ~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~ 316 (394)
T cd03794 237 TLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKL 316 (394)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHH
Confidence 9999998873 799999999988877777433 2379999999999999999999999999997765 8899
Q ss_pred HHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-hCCHHHHHHHH
Q 009759 409 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTI 487 (526)
Q Consensus 409 lEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~-~fs~~~~~~~~ 487 (526)
+|||++|+|||+++.++..+.+ .++.+|++++.+|+++++++|.+++.|++.++++++++++.++ +|+|+.+++++
T Consensus 317 ~Ea~~~G~pvi~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 317 FEYMAAGKPVLASVDGESAELV---EEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHCCCcEEEecCCCchhhh---ccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 9999999999999999999999 7778999999999999999999999999999999999999995 89999999876
No 40
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=3.2e-37 Score=308.18 Aligned_cols=341 Identities=19% Similarity=0.203 Sum_probs=252.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccc-cCceec-cccccCCCccccccchhcccH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEF-YGAKLI-GSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 194 (526)
|||+++.+. ++..||.++++.+++++|.+. ||+|.+++......... ...... ........... ......
T Consensus 1 mkI~~~~~~--~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 74 (359)
T PRK09922 1 MKIAFIGEA--VSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLR----RAKHVY 74 (359)
T ss_pred CeeEEeccc--ccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhc----ccHHHH
Confidence 899999874 345699999999999999999 89999988755422111 111100 00011111111 122345
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCC--EEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP--IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
.+.+++++.+||+||+|.+... +.+..+++..+.| ++.+.|...... .. .....+..+|.++++
T Consensus 75 ~l~~~l~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~------~~~~~~~~~d~~i~~ 140 (359)
T PRK09922 75 NFSKWLKETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHK-------KH------AECKKITCADYHLAI 140 (359)
T ss_pred HHHHHHHhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCccccc-------ch------hhhhhhhcCCEEEEc
Confidence 7778999999999999986433 3334445555655 444455422110 00 011123789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccc--ccccHHHHHHHHHhC-C
Q 009759 273 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG--VEKSLDFLKRVMDRL-P 349 (526)
Q Consensus 273 S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~--~~Kg~~~li~a~~~l-~ 349 (526)
|+..++.+.+.+ .+.+++.+++||+|.+.+..... ...++++++++||+. .+||++.+++++..+ +
T Consensus 141 S~~~~~~~~~~~-~~~~ki~vi~N~id~~~~~~~~~----------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~ 209 (359)
T PRK09922 141 SSGIKEQMMARG-ISAQRISVIYNPVEIKTIIIPPP----------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTTG 209 (359)
T ss_pred CHHHHHHHHHcC-CCHHHEEEEcCCCCHHHccCCCc----------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhCC
Confidence 999999998764 46678999999999654432111 123567899999986 469999999999888 4
Q ss_pred CcEEEEEeCCccHHHHHHHhcCC----CeEEecccCh--hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC-
Q 009759 350 EARIAFIGDGPYREELEKMFTGM----PAVFTGMLLG--EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR- 422 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~--~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~- 422 (526)
+++|+++|+|+..+.+++++++. +|.|+|++++ +++.++|+.+|++|+||..||+|++++||||||+|||+++
T Consensus 210 ~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~ 289 (359)
T PRK09922 210 EWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDC 289 (359)
T ss_pred CeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCC
Confidence 79999999999888888887643 6999999854 7889999999999999999999999999999999999999
Q ss_pred CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 009759 423 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 423 ~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l 496 (526)
.||..|++ .++.+|++++++|+++++++|.++++|++.+. .....+.+++|+-+...+++. ++|..++
T Consensus 290 ~~g~~eiv---~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 357 (359)
T PRK09922 290 MSGPRDII---KPGLNGELYTPGNIDEFVGKLNKVISGEVKYQ--HDAIPNSIERFYEVLYFKNLN-NALFSKL 357 (359)
T ss_pred CCChHHHc---cCCCceEEECCCCHHHHHHHHHHHHhCcccCC--HHHHHHHHHHhhHHHHHHHHH-HHHHHHh
Confidence 89999999 88999999999999999999999999987542 223334457888899999996 7777665
No 41
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.2e-36 Score=304.61 Aligned_cols=348 Identities=22% Similarity=0.323 Sum_probs=262.5
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||++++.. ...||++..+.++++.|.+.||+|++++........... ..... ............+.....+.++
T Consensus 1 ~il~~~~~---~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (360)
T cd04951 1 KILYVITG---LGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPI-DATII--LNLNMSKNPLSFLLALWKLRKI 74 (360)
T ss_pred CeEEEecC---CCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchh-hccce--EEecccccchhhHHHHHHHHHH
Confidence 57888654 356999999999999999999999999865432221111 00000 0111111111122334567778
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
+++.+||+||+|......+..+......+.+++++.|+.... ........+.....++.++++|+...+.
T Consensus 75 ~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 144 (360)
T cd04951 75 LRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNEG----------GRLRMLAYRLTDFLSDLTTNVSKEALDY 144 (360)
T ss_pred HHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCch----------hHHHHHHHHHHhhccCceEEEcHHHHHH
Confidence 888999999999865443333332234577899999975421 1112234455666788899999999999
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcc-cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEE
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFR-SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIA 354 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ 354 (526)
+.+.+..+..++.++|||+|...+.+... ....+..++. .+++++++++|++.+.||++.+++++.++ ++++|+
T Consensus 145 ~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~ 223 (360)
T cd04951 145 FIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGV-KNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLL 223 (360)
T ss_pred HHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCc-CCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEE
Confidence 98887667789999999999887765422 2233444433 45678899999999999999999999876 479999
Q ss_pred EEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCcee
Q 009759 355 FIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII 430 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v 430 (526)
|+|+|+..+++++.+.+. +|.+.|++ +++..+|+.||++++||..|++|++++|||++|+|||+++.|+..|++
T Consensus 224 i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i 301 (360)
T cd04951 224 IAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVV 301 (360)
T ss_pred EEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEe
Confidence 999999888887776543 69999987 689999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 009759 431 PEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 431 ~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~ 493 (526)
++ +|++++++|+++++++|.++++ +++.++.++++ ++.+ ++|+|+.+++++. ++|+
T Consensus 302 ---~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~-~~y~ 359 (360)
T cd04951 302 ---GD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWL-TLYT 359 (360)
T ss_pred ---cC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHH-HHhh
Confidence 54 7888999999999999999994 66666667666 6666 6899999999997 7885
No 42
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=8.7e-37 Score=306.35 Aligned_cols=357 Identities=25% Similarity=0.322 Sum_probs=261.8
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCcee---ccccccCCCccccccchhcccHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKL---IGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
||++++..++ +..||++.++..++++|.+.||+|++++.............. ........................
T Consensus 1 kIl~i~~~~~-~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (375)
T cd03821 1 KILHVIPSFD-PKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLA 79 (375)
T ss_pred CeEEEcCCCC-cccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHH
Confidence 6889988765 788999999999999999999999999976543322111100 000000000000111111112223
Q ss_pred HHHHHhcCCCEEEECCC-chHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccc--hHHHHHHHHhhcCcEEEeCC
Q 009759 197 ISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVK--PMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ad~ii~~S 273 (526)
.......++|+||+++. ..........++..++|++++.|+........ .....+ ......+..++.++.+++.|
T Consensus 80 ~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~s 157 (375)
T cd03821 80 WLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALP--HKALKKRLAWFLFERRLLQAAAAVHATS 157 (375)
T ss_pred HHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccc--cchhhhHHHHHHHHHHHHhcCCEEEECC
Confidence 33344568999999984 33344455566778999999999875543211 111111 11234567788899999999
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P 349 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~ 349 (526)
........... ...++.++|||+|.+.+.+...... +.... ...++++++++|++.+.||++.+++++..+ +
T Consensus 158 ~~~~~~~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~ 233 (375)
T cd03821 158 EQEAAEIRRLG--LKAPIAVIPNGVDIPPFAALPSRGR-RRKFP-ILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFP 233 (375)
T ss_pred HHHHHHHHhhC--CcccEEEcCCCcChhccCcchhhhh-hhhcc-CCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcC
Confidence 88777776554 4578999999999988865432222 23332 256778999999999999999999999887 4
Q ss_pred CcEEEEEeCCc--cHHHHHHHhc----CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 350 EARIAFIGDGP--YREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 350 ~~~l~ivG~g~--~~~~l~~l~~----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
+++|+++|.+. ....++.++. ..+|.++|+++++++..+|+.||++|+||..|++|++++|||++|+|||+++.
T Consensus 234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~ 313 (375)
T cd03821 234 DWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK 313 (375)
T ss_pred CeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC
Confidence 79999999753 3344443322 23699999999999999999999999999999999999999999999999999
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 488 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~ 488 (526)
++..+++ .+ ..|++++. +.++++++|.+++++++.++++++++++.+ ++|+|+.++++++
T Consensus 314 ~~~~~~~---~~-~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 314 VPWQELI---EY-GCGWVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CCHHHHh---hc-CceEEeCC-ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999999 66 78888765 559999999999999999999999999996 7999999999875
No 43
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=3.7e-37 Score=309.61 Aligned_cols=342 Identities=17% Similarity=0.262 Sum_probs=245.8
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccC-cee---c-cccccCCCccccccchhcccH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYG-AKL---I-GSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~~~~ 194 (526)
||+++++. ...||.+.++.++++.|.+.||+|++++....... +.. ... . +... .++ .... ..+..
T Consensus 1 ki~~~~~~---~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~g~~~-~~~--~~~~--~~~~~ 71 (372)
T cd03792 1 KVLHVNST---PYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEF-FNVTKKFHNALQGADI-ELS--EEEK--EIYLE 71 (372)
T ss_pred CeEEEeCC---CCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhH-HHHHHHhhHhhcCCCC-CCC--HHHH--HHHHH
Confidence 68899875 35699999999999999999999999987553211 110 000 1 1111 111 0000 01111
Q ss_pred HHHH----HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEE
Q 009759 195 RIIS----EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 270 (526)
Q Consensus 195 ~l~~----~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 270 (526)
.... .+...+||+||+|++....+ ..+.+..++|+|++.|....... ...+...+..++.+|.++
T Consensus 72 ~~~~~~~~~~~~~~~Dvv~~h~~~~~~~--~~~~~~~~~~~i~~~H~~~~~~~---------~~~~~~~~~~~~~~d~~i 140 (372)
T cd03792 72 WNEENAERPLLDLDADVVVIHDPQPLAL--PLFKKKRGRPWIWRCHIDLSSPN---------RRVWDFLQPYIEDYDAAV 140 (372)
T ss_pred HHHHHhccccccCCCCEEEECCCCchhH--HHhhhcCCCeEEEEeeeecCCCc---------HHHHHHHHHHHHhCCEEe
Confidence 1111 23366899999998764322 22233348999999998653211 122334566778899999
Q ss_pred eCChhHHHHHHHhcccCCCcEEEeecCCCCCC-CCCCc---ccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHH
Q 009759 271 VPSVAIGKDLEAARVTAANKIRIWKKGVDSES-FHPRF---RSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 346 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~-~~~~~---~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~ 346 (526)
+.+... . ..+ ....++ ++|||+|... +.... .....+.+++. .+++++|+++||+.+.||++.++++++
T Consensus 141 ~~~~~~---~-~~~-~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vgrl~~~Kg~~~ll~a~~ 213 (372)
T cd03792 141 FHLPEY---V-PPQ-VPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGI-DPERPYITQVSRFDPWKDPFGVIDAYR 213 (372)
T ss_pred ecHHHh---c-CCC-CCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCC-CCCCcEEEEEeccccccCcHHHHHHHH
Confidence 888322 2 222 234455 9999999753 21111 12234445544 467889999999999999999999987
Q ss_pred hC----CCcEEEEEeCCccH-----HHHHHHhc----CCCeEEeccc--ChhhHHHHHHcCcEEEecCCCCCCcHHHHHH
Q 009759 347 RL----PEARIAFIGDGPYR-----EELEKMFT----GMPAVFTGML--LGEELSQAYASGDVFVMPSESETLGLVVLEA 411 (526)
Q Consensus 347 ~l----~~~~l~ivG~g~~~-----~~l~~l~~----~~~V~~~g~v--~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEA 411 (526)
.+ ++++|+++|+|+.. +.++++.+ ..+|.+.|.. +++++..+|+.||++++||..||+|++++||
T Consensus 214 ~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA 293 (372)
T cd03792 214 KVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEA 293 (372)
T ss_pred HHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHH
Confidence 65 67999999987531 12333321 2368999986 7889999999999999999999999999999
Q ss_pred HHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Q 009759 412 MSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNE 490 (526)
Q Consensus 412 ma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ 490 (526)
||||+|||+++.+|..+.+ .++.+|++++ +.++++++|.+++.|++.+++|++++++.+ ++|+|+.++++++ +
T Consensus 294 ~a~G~Pvv~s~~~~~~~~i---~~~~~g~~~~--~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~-~ 367 (372)
T cd03792 294 LWKGKPVIAGPVGGIPLQI---EDGETGFLVD--TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYL-Y 367 (372)
T ss_pred HHcCCCEEEcCCCCchhhc---ccCCceEEeC--CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-H
Confidence 9999999999999999999 8899999987 677899999999999999999999999998 6899999999998 7
Q ss_pred HHHH
Q 009759 491 QYNA 494 (526)
Q Consensus 491 ly~~ 494 (526)
+|++
T Consensus 368 ~~~~ 371 (372)
T cd03792 368 LISK 371 (372)
T ss_pred HHHh
Confidence 8875
No 44
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.7e-37 Score=314.52 Aligned_cols=354 Identities=20% Similarity=0.222 Sum_probs=257.8
Q ss_pred EEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCce--eccccccCCC-----------cccc
Q 009759 121 IALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAK--LIGSRSFPCP-----------WYQK 185 (526)
Q Consensus 121 Iliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~--~~~~~~~~~~-----------~~~~ 185 (526)
||++++..|+|..+|+..++++++++|++. |+|++++......+. ..... ...+...+.+ ....
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTG 79 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCC
Confidence 689999999999999999999999999876 999999976432211 00000 0000011100 0000
Q ss_pred ------ccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccc------cccc--
Q 009759 186 ------VPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT------FSWL-- 251 (526)
Q Consensus 186 ------~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~------~~~~-- 251 (526)
..........+.+.+++.++|+||++......+ ...+..++|+|++.||.......... ..+.
T Consensus 80 ~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~---~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~ 156 (397)
T TIGR03087 80 EPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQY---VTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYR 156 (397)
T ss_pred CCCcchhhCCHHHHHHHHHHHhhCCCCEEEEecccccee---ccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHH
Confidence 111122344566677778999999987533221 11135689999999985432211110 1111
Q ss_pred --cchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEE
Q 009759 252 --VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHV 329 (526)
Q Consensus 252 --~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 329 (526)
.+....+++.+++.+|.++++|+..++.+.+.++....++.++|||+|.+.|.+...... . ...+..+++|+
T Consensus 157 ~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~-----~-~~~~~~~ilf~ 230 (397)
T TIGR03087 157 REGRLLLAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN-----P-YPPGKRVLVFT 230 (397)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC-----C-CCCCCcEEEEE
Confidence 112335778899999999999999999998876545678999999999998865422110 0 12346789999
Q ss_pred ecccccccHHHHHHH----HH----hCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC-
Q 009759 330 GRLGVEKSLDFLKRV----MD----RLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE- 400 (526)
Q Consensus 330 G~l~~~Kg~~~li~a----~~----~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~- 400 (526)
|++.+.||++.++++ +. ..|+++|+|+|+|+. +.++++....+|+++|+++ ++..+|+.||++|+||.
T Consensus 231 G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~ 307 (397)
T TIGR03087 231 GAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSVA--DVRPYLAHAAVAVAPLRI 307 (397)
T ss_pred EecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeecC--CHHHHHHhCCEEEecccc
Confidence 999999999988743 32 347899999999875 4566666666899999995 78999999999999997
Q ss_pred CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCC
Q 009759 401 SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYD 479 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs 479 (526)
.||+|++++||||+|+|||+++.++.. +. ..+++|+++. +|+++++++|.++++|++.+++|++++++.+ ++||
T Consensus 308 ~eG~~~~~lEAma~G~PVV~t~~~~~~-i~---~~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fs 382 (397)
T TIGR03087 308 ARGIQNKVLEAMAMAKPVVASPEAAEG-ID---ALPGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYH 382 (397)
T ss_pred cCCcccHHHHHHHcCCCEEecCccccc-cc---ccCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCC
Confidence 599999999999999999999976432 33 3445788886 7999999999999999999999999999998 5899
Q ss_pred HHHHHHHHHHHHHH
Q 009759 480 WRAATRTIRNEQYN 493 (526)
Q Consensus 480 ~~~~~~~~~~~ly~ 493 (526)
|+..++++. ++|+
T Consensus 383 w~~~~~~~~-~~l~ 395 (397)
T TIGR03087 383 WPRNLARLD-ALLE 395 (397)
T ss_pred HHHHHHHHH-HHhc
Confidence 999999996 6664
No 45
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=9.3e-37 Score=305.41 Aligned_cols=337 Identities=21% Similarity=0.254 Sum_probs=249.0
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+++++. ...||.+.++.+++++|.+.||+|++++...............+...+..+. ...........+.+.
T Consensus 1 kIl~~~~~---~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 75 (358)
T cd03812 1 KILHIVGT---MNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPA--RKKNPLKYFKKLYKL 75 (358)
T ss_pred CEEEEeCC---CCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecC--CCccHHHHHHHHHHH
Confidence 68888774 2789999999999999999999999999865432111111111121111111 111223334566677
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCE-EEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPI-VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~-v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
+++.+||+||+|......+.. .+.+..+.|. +++.|+......... .. .......+.+.+.+|.++++|+..++
T Consensus 76 ~~~~~~Dvv~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~i~~s~~~~~ 150 (358)
T cd03812 76 IKKNKYDIVHVHGSSASGFIL-LAAKKAGVKVRIAHSHNTSDSHDKKK---KI-LKYKVLRKLINRLATDYLACSEEAGK 150 (358)
T ss_pred HhcCCCCEEEEeCcchhHHHH-HHHhhCCCCeEEEEeccccccccccc---hh-hHHHHHHHHHHhcCCEEEEcCHHHHH
Confidence 788999999999876444433 3344466665 566676442211111 00 00134567788899999999999999
Q ss_pred HHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEE
Q 009759 279 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIA 354 (526)
Q Consensus 279 ~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ 354 (526)
.+... ....++.+||||+|.+.+.+.......+.... ...++++|+|+|++.+.||++.+++++..+ ++++++
T Consensus 151 ~~~~~--~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ 227 (358)
T cd03812 151 WLFGK--VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELG-ILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLL 227 (358)
T ss_pred HHHhC--CCcccEEEEeccCcHHHcCCCchhhhHHHHcC-CCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEE
Confidence 88776 25679999999999987765433222233332 256788999999999999999999999887 589999
Q ss_pred EEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCcee
Q 009759 355 FIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII 430 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v 430 (526)
|+|+|+..+.+++.+++. +|.++|+ .+++.++|+.||++|+||..|++|++++||||+|+|||+++.||..+++
T Consensus 228 ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i 305 (358)
T cd03812 228 LVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDL 305 (358)
T ss_pred EEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhh
Confidence 999999888887776543 6999999 4789999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 009759 431 PEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 475 (526)
Q Consensus 431 ~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~ 475 (526)
.+ ..|++...+++++++++|.++++|++.++.+...+....
T Consensus 306 ---~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 306 ---TD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred ---cc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 66 456666777899999999999999999888877665544
No 46
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=8.3e-36 Score=298.97 Aligned_cols=343 Identities=24% Similarity=0.290 Sum_probs=254.1
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+|++... +..||.+.++.+++++|.+.||+|.+++................ ..............+.+.
T Consensus 1 kI~~v~~~~--~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 71 (366)
T cd03822 1 RIALVSPYP--PRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEV-------VRVIVLDNPLDYRRAARA 71 (366)
T ss_pred CeEEecCCC--CCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccc-------eeeeecCCchhHHHHHHH
Confidence 788997642 45899999999999999999999999987654322211111000 000011112233466778
Q ss_pred HHhcCCCEEEECCCchH-----HHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC-
Q 009759 200 VARFKPDIIHASSPGIM-----VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS- 273 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~-----~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S- 273 (526)
+++.+||+||++.+... ........+..++|+|+++|+..+.. .........+.+++.+|.++++|
T Consensus 72 ~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------~~~~~~~~~~~~~~~~d~ii~~s~ 143 (366)
T cd03822 72 IRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHE--------PRPGDRALLRLLLRRADAVIVMSS 143 (366)
T ss_pred HhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccc--------cchhhhHHHHHHHhcCCEEEEeeH
Confidence 88899999999873211 11112223458999999999962111 11123356777889999999996
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P 349 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~ 349 (526)
+..++.+...+ ..++.+++||++...+.+.... ... ....+.++++|+|++.+.||++.+++++..+ +
T Consensus 144 ~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~----~~~-~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~ 215 (366)
T cd03822 144 ELLRALLLRAY---PEKIAVIPHGVPDPPAEPPESL----KAL-GGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHP 215 (366)
T ss_pred HHHHHHHhhcC---CCcEEEeCCCCcCcccCCchhh----Hhh-cCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCC
Confidence 33333333322 3699999999998776543211 111 1245678999999999999999999999766 5
Q ss_pred CcEEEEEeCCccHHH---------HHHHhcCCCeEEecc-cChhhHHHHHHcCcEEEecCCCC--CCcHHHHHHHHcCCc
Q 009759 350 EARIAFIGDGPYREE---------LEKMFTGMPAVFTGM-LLGEELSQAYASGDVFVMPSESE--TLGLVVLEAMSSGIP 417 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~---------l~~l~~~~~V~~~g~-v~~~~l~~~~~~aDv~v~ps~~e--~~~~~ilEAma~G~P 417 (526)
+++|+++|.+..... ++++....+|.++|. ++.+++..+|+.||++++||..| ++|++++|||++|+|
T Consensus 216 ~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~P 295 (366)
T cd03822 216 DVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKP 295 (366)
T ss_pred CeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCC
Confidence 899999997653222 222222347999987 99999999999999999999999 999999999999999
Q ss_pred EEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 418 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 418 vI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
||+++.|+ .+.+ .++.+|++++.+|+++++++|.++++|++.+.++++++++.+++|+|+.+++++. ++|
T Consensus 296 vI~~~~~~-~~~i---~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~ 365 (366)
T cd03822 296 VISTPVGH-AEEV---LDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYL-RLL 365 (366)
T ss_pred EEecCCCC-hhee---eeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHh
Confidence 99999999 6666 6788999999999999999999999999999999999999997799999999997 665
No 47
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=3.5e-36 Score=300.80 Aligned_cols=349 Identities=26% Similarity=0.360 Sum_probs=269.6
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--cc--cCceeccccccCCCccccccchhcccHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--EF--YGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
||++++.... .||.+..+..++++|.+.||+|.+++....... .. .++.+. .+... .. .........
T Consensus 1 ~i~~i~~~~~---~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~---~~~~~--~~-~~~~~~~~~ 71 (365)
T cd03807 1 KVLHVITGLD---VGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVY---CLGKR--PG-RPDPGALLR 71 (365)
T ss_pred CeEEEEeecc---CccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEE---EEecc--cc-cccHHHHHH
Confidence 6888877533 399999999999999999999999986543211 10 122211 11111 11 122334567
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHh-cCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKL-LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
+.+.+++.+||+||++......+... ..+. .+.+++++.|+...... .+.......+.+.+.+.+|.++++|+
T Consensus 72 ~~~~~~~~~~div~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~ 145 (365)
T cd03807 72 LYKLIRRLRPDVVHTWMYHADLYGGL-AARLAGVPPVIWGIRHSDLDLG-----KKSTRLVARLRRLLSSFIPLIVANSA 145 (365)
T ss_pred HHHHHHhhCCCEEEeccccccHHHHH-HHHhcCCCcEEEEecCCccccc-----chhHhHHHHHHHHhccccCeEEeccH
Confidence 78888899999999987654433333 3333 68899999998764422 22233445667778889999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCccc-HHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C
Q 009759 275 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS-SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P 349 (526)
Q Consensus 275 ~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~ 349 (526)
...+.+...+ .+.+++.+++||+|...+.+.... ...+.+++. .++.+.++++|++.+.||++.++++++.+ +
T Consensus 146 ~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~ 223 (365)
T cd03807 146 AAAEYHQAIG-YPPKKIVVIPNGVDTERFSPDLDARARLREELGL-PEDTFLIGIVARLHPQKDHATLLRAAALLLKKFP 223 (365)
T ss_pred HHHHHHHHcC-CChhheeEeCCCcCHHhcCCcccchHHHHHhcCC-CCCCeEEEEecccchhcCHHHHHHHHHHHHHhCC
Confidence 9999998864 366789999999998877654332 223334433 45678899999999999999999999776 5
Q ss_pred CcEEEEEeCCccHHHHHHHhc-C----CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 350 EARIAFIGDGPYREELEKMFT-G----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~~-~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
+++|+++|.++.....+.... + .+|.+.|.+ +++..+|+.||++++|+..|++|++++|||++|+|||+++.|
T Consensus 224 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~ 301 (365)
T cd03807 224 NARLLLVGDGPDRANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG 301 (365)
T ss_pred CeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC
Confidence 799999998876666655554 2 268889976 689999999999999999999999999999999999999999
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~ 493 (526)
+..+++ .+ +|++++.+|+++++++|.+++++++.+.++++++++.+ ++|+|+.+++++. ++|+
T Consensus 302 ~~~e~~---~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~y~ 365 (365)
T cd03807 302 DNAELV---GD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYE-ELYR 365 (365)
T ss_pred ChHHHh---hc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 999999 55 89999999999999999999999999999999999998 5899999999997 6763
No 48
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=6.8e-36 Score=296.48 Aligned_cols=337 Identities=24% Similarity=0.367 Sum_probs=257.1
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||++++.... ..||.++.+..++++|.+.||+|++++.....................................+.+.
T Consensus 1 kI~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (348)
T cd03820 1 KILFVIPSLG--NAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKL 78 (348)
T ss_pred CeEEEecccc--CCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHh
Confidence 6888887533 27999999999999999999999999986654111111111111111111111222234455678888
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcC-CCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLC-VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
+++.+||+|+++.+.... .......+ +|++++.|+........ .......+..++.+|.++++|+..+.
T Consensus 79 l~~~~~d~i~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~d~ii~~s~~~~~ 148 (348)
T cd03820 79 LKNNKPDVVISFLTSLLT---FLASLGLKIVKLIVSEHNSPDAYKKR-------LRRLLLRRLLYRRADAVVVLTEEDRA 148 (348)
T ss_pred hcccCCCEEEEcCchHHH---HHHHHhhccccEEEecCCCccchhhh-------hHHHHHHHHHHhcCCEEEEeCHHHHH
Confidence 888999999999876222 22233334 49999999865432211 11112478889999999999999872
Q ss_pred HHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEE
Q 009759 279 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIA 354 (526)
Q Consensus 279 ~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ 354 (526)
... .....++.+++||++...+.+. ...+++.++++|++.+.||++.++++++.+ ++++|+
T Consensus 149 ~~~---~~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~ 213 (348)
T cd03820 149 LYY---KKFNKNVVVIPNPLPFPPEEPS------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLR 213 (348)
T ss_pred Hhh---ccCCCCeEEecCCcChhhcccc------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEE
Confidence 222 2255799999999998866543 135678899999999999999999999876 589999
Q ss_pred EEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC-CCCce
Q 009759 355 FIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG-GIPDI 429 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g-g~~e~ 429 (526)
++|.++..+.+++++.+. +|.+.|+ .+++..+|+.||++|+||..|++|++++|||++|+|||+++.+ +..++
T Consensus 214 i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~ 291 (348)
T cd03820 214 IVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEI 291 (348)
T ss_pred EEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhh
Confidence 999998888777665543 5889998 4899999999999999999999999999999999999999975 45666
Q ss_pred ecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 430 IPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 430 v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
+ .++.+|++++..|+++++++|.++++|++.++++++++++.+++|+|+.+++++.
T Consensus 292 ~---~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 292 I---EDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred h---ccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 6 6667999999999999999999999999999999999988889999999998874
No 49
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.6e-36 Score=313.10 Aligned_cols=274 Identities=27% Similarity=0.350 Sum_probs=226.4
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccc-----c-----cccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIP-----R-----YTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
++|+||+|+....++.+.++++..++|+|++.|+.++.... . .......+.+..+.+..++.||.|+++|
T Consensus 173 ~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~~s 252 (475)
T cd03813 173 KADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITTLY 252 (475)
T ss_pred CCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEecC
Confidence 78999999877666777778888999999999996542110 0 0011112233456678899999999999
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P 349 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~ 349 (526)
+..++.....+ .+.+|+.+||||+|.+.+.+.... ....+.++|+|+||+.+.||++.+++|++.+ +
T Consensus 253 ~~~~~~~~~~g-~~~~ki~vIpNgid~~~f~~~~~~--------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p 323 (475)
T cd03813 253 EGNRERQIEDG-ADPEKIRVIPNGIDPERFAPARRA--------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIP 323 (475)
T ss_pred HHHHHHHHHcC-CCHHHeEEeCCCcCHHHcCCcccc--------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCC
Confidence 99988876655 467899999999999888664321 0245678999999999999999999999765 7
Q ss_pred CcEEEEEeCCc----cHHHHHHHhcC----CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 350 EARIAFIGDGP----YREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 350 ~~~l~ivG~g~----~~~~l~~l~~~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
+++++|+|.++ +.+++++++++ .+|+|+| .+++.++|+.+|++|+||..||+|++++||||||+|||+|
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVat 400 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVAT 400 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEEC
Confidence 89999999873 34556666653 3699999 4689999999999999999999999999999999999999
Q ss_pred CCCCCCceecccCC------CceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 009759 422 RAGGIPDIIPEDQD------GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 422 ~~gg~~e~v~~~~~------~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~-~fs~~~~~~~~~~~ly~ 493 (526)
+.|+..+++ .+ |.+|++++++|+++++++|.++++|++.++++++++++.++ .|+|+.+++++. ++|+
T Consensus 401 d~g~~~elv---~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~-~lY~ 475 (475)
T cd03813 401 DVGSCRELI---EGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYR-RLYL 475 (475)
T ss_pred CCCChHHHh---cCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 999999999 55 56999999999999999999999999999999999999995 799999999997 7874
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=1.2e-35 Score=296.04 Aligned_cols=344 Identities=26% Similarity=0.335 Sum_probs=264.2
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--cccCceeccccccCCCc-cccccchhcccHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--EFYGAKLIGSRSFPCPW-YQKVPLSLALSPRI 196 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 196 (526)
||++++.. .||.+.++..++++|.+.||+|++++....... ...+.....+ +... .......+.....+
T Consensus 1 kIl~i~~~-----~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 72 (359)
T cd03808 1 KILHIVTV-----DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPI---PLDRRGINPFKDLKALLRL 72 (359)
T ss_pred CeeEEEec-----chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEec---cccccccChHhHHHHHHHH
Confidence 68888763 589999999999999999999999997765432 1122222211 1111 01111223344567
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhH
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI 276 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~ 276 (526)
.+.+++.+||+||++......+..+......+.++++..|+......... ........+++..++.+|.++++|+..
T Consensus 73 ~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~ii~~s~~~ 149 (359)
T cd03808 73 YRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGG---LKRRLYLLLERLALRFTDKVIFQNEDD 149 (359)
T ss_pred HHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhccch---hHHHHHHHHHHHHHhhccEEEEcCHHH
Confidence 78888899999999976444333333222556778888887543322211 123344567788899999999999999
Q ss_pred HHHHHHhcccC-CCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCc
Q 009759 277 GKDLEAARVTA-ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEA 351 (526)
Q Consensus 277 ~~~l~~~~~~~-~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~ 351 (526)
.+.+.+.+..+ ..++.++++|+|.+.+.+.... ...+++.++|+|++.+.||++.++++++.+ +++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~ 220 (359)
T cd03808 150 RDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP---------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNV 220 (359)
T ss_pred HHHHHHhcCCCcCceEEecCCCCChhhcCccccc---------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCe
Confidence 99998887533 4677888999998877554221 135678999999999999999999999887 679
Q ss_pred EEEEEeCCccHHHHHH-----HhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 352 RIAFIGDGPYREELEK-----MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 352 ~l~ivG~g~~~~~l~~-----l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
+|+++|.+........ .....+|.+.|+. +++.++|+.||++++|+..|++|++++|||++|+|||+++.++.
T Consensus 221 ~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~ 298 (359)
T cd03808 221 RLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFR--DDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGC 298 (359)
T ss_pred EEEEEcCCCcchhhHHHHHHhcCCcceEEEeecc--ccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCc
Confidence 9999998865544432 2223379999994 78999999999999999999999999999999999999999999
Q ss_pred CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 009759 427 PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 488 (526)
Q Consensus 427 ~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~ 488 (526)
.+++ .++.+|++++.+|+++++++|.+++.|++.+.++++++++.+ ++|+|+.++++++
T Consensus 299 ~~~i---~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 299 REAV---IDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred hhhh---hcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999 888999999999999999999999999999999999999997 6999999998875
No 51
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=3.1e-36 Score=301.22 Aligned_cols=325 Identities=24% Similarity=0.346 Sum_probs=251.5
Q ss_pred ccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc--cCceeccccccCCCccc-cccchhcccHHHHHHHHhcCCCEE
Q 009759 132 YVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF--YGAKLIGSRSFPCPWYQ-KVPLSLALSPRIISEVARFKPDII 208 (526)
Q Consensus 132 ~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~pDiV 208 (526)
..||.+.++.+++++|.++||+|.+++......... .+..... .+... ...........+.+.+++.+||+|
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~dii 82 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIK-----LPFISKNPLRILLNVARLRRLIREEKVDIV 82 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEE-----ccccccchhhhHHHHHHHHHHHHHcCCCEE
Confidence 349999999999999999999999998754322211 1111111 11111 111223345677888889999999
Q ss_pred EECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCC
Q 009759 209 HASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAA 288 (526)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~ 288 (526)
|+|+.... +.+.+..+..++|+++++|+.+.... ....+++.+|.++++|+...+.+.+.++.+.
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~i~~~h~~~~~~~--------------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~ 147 (355)
T cd03819 83 HARSRAPA-WSAYLAARRTRPPFVTTVHGFYSVNF--------------RYNAIMARGDRVIAVSNFIADHIRENYGVDP 147 (355)
T ss_pred EECCCchh-HHHHHHHHhcCCCEEEEeCCchhhHH--------------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCCh
Confidence 99986433 33445567779999999998654211 3445677899999999999999987776677
Q ss_pred CcEEEeecCCCCCCCCCCcccHH----HHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCc
Q 009759 289 NKIRIWKKGVDSESFHPRFRSSE----MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP 360 (526)
Q Consensus 289 ~ki~vi~ngid~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~ 360 (526)
.++.+++||+|.+.+.+...... .+.+... .++.++++++|++.+.||++.+++++..+ ++++++++|.++
T Consensus 148 ~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~ 226 (355)
T cd03819 148 DRIRVIPRGVDLDRFDPGAVPPERILALAREWPL-PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ 226 (355)
T ss_pred hhEEEecCCccccccCccccchHHHHHHHHHcCC-CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc
Confidence 89999999999988765432111 2333332 45678899999999999999999999887 469999999876
Q ss_pred cHHHH----HHHhc----CCCeEEecccChhhHHHHHHcCcEEEecC-CCCCCcHHHHHHHHcCCcEEEeCCCCCCceec
Q 009759 361 YREEL----EKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIP 431 (526)
Q Consensus 361 ~~~~l----~~l~~----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps-~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~ 431 (526)
..+.+ .+.+. ..+|++.|+. +++.++|++||++++|| ..|++|++++|||++|+|||+++.|+..|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i- 303 (355)
T cd03819 227 GRRFYYAELLELIKRLGLQDRVTFVGHC--SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETV- 303 (355)
T ss_pred ccchHHHHHHHHHHHcCCcceEEEcCCc--ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHH-
Confidence 43332 22332 2369999994 79999999999999999 7899999999999999999999999999999
Q ss_pred ccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHH-HhCCHHH
Q 009759 432 EDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEM-EKYDWRA 482 (526)
Q Consensus 432 ~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~~a~~~~-~~fs~~~ 482 (526)
.++.+|++++++|+++++++|..++. +++.++++++++++.+ ++|+|+.
T Consensus 304 --~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 304 --RPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred --hCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 88889999999999999999975554 8999999999999999 5899985
No 52
>PLN00142 sucrose synthase
Probab=100.00 E-value=7.1e-36 Score=311.66 Aligned_cols=378 Identities=19% Similarity=0.257 Sum_probs=257.0
Q ss_pred CCCcEEEEEeccCC--------CCccCchHHHHHHH--------HHHHHHCCCeEE----EEEeCCCCC---------cc
Q 009759 116 SRPRRIALFVEPSP--------FSYVSGYKNRFQNF--------IKYLREMGDEVM----VVTTHEGVP---------QE 166 (526)
Q Consensus 116 ~~~mkIliv~~~~p--------~~~~gG~~~~~~~l--------~~~L~~~G~~V~----vi~~~~~~~---------~~ 166 (526)
..-|||++++.+.. .++.||-..++.++ ++.|+++||+|+ |+|...... +.
T Consensus 277 p~~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~ 356 (815)
T PLN00142 277 PMVFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEK 356 (815)
T ss_pred hHhHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCccee
Confidence 44579999966542 26677777777654 477888999875 877532211 11
Q ss_pred cc---CceeccccccCCC-----cccc---ccchhcccHHHHHHH-Hh--cCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 167 FY---GAKLIGSRSFPCP-----WYQK---VPLSLALSPRIISEV-AR--FKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 167 ~~---~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~l~~~l-~~--~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
.. +..+++++.-+.. +..+ .++...+...+.+.+ ++ .+||+||+|.+. .++.+..+++..++|.|
T Consensus 357 v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwd-sg~vA~~La~~lgVP~v 435 (815)
T PLN00142 357 VSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSD-GNLVASLLAHKLGVTQC 435 (815)
T ss_pred ccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcc-HHHHHHHHHHHhCCCEE
Confidence 11 1222222222210 0011 011122223344333 22 359999999864 45667888999999999
Q ss_pred EEEecCCccccccccccc--cc-c----hHHHHHHHHhhcCcEEEeCChhHHHH-------HHHhc------------cc
Q 009759 233 MSYHTHVPVYIPRYTFSW--LV-K----PMWLVIKFLHRAADLTLVPSVAIGKD-------LEAAR------------VT 286 (526)
Q Consensus 233 ~~~h~~~~~~~~~~~~~~--~~-~----~~~~~~~~~~~~ad~ii~~S~~~~~~-------l~~~~------------~~ 286 (526)
.+.|.............+ .. + .....+..++..||.||+.|...... +..+. ++
T Consensus 436 ~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GI 515 (815)
T PLN00142 436 TIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGI 515 (815)
T ss_pred EEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccc
Confidence 999975322111111100 00 1 01234777889999999999877642 22221 11
Q ss_pred --CCCcEEEeecCCCCCCCCCCcccHH------------------HHHhhcC-CCCCCcEEEEEecccccccHHHHHHHH
Q 009759 287 --AANKIRIWKKGVDSESFHPRFRSSE------------------MRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVM 345 (526)
Q Consensus 287 --~~~ki~vi~ngid~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~i~~vG~l~~~Kg~~~li~a~ 345 (526)
...++.+|++|+|...|.|...... .+..++. ...++++|+++||+.+.||++.+++|+
T Consensus 516 d~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~ 595 (815)
T PLN00142 516 DVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWY 595 (815)
T ss_pred cccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHH
Confidence 2458999999999998876432211 1122332 245677999999999999999999999
Q ss_pred HhC----CCcEEEEEeCCc------cH------HHHHHHhcCC----CeEEecccC----hhhHHHHHH-cCcEEEecCC
Q 009759 346 DRL----PEARIAFIGDGP------YR------EELEKMFTGM----PAVFTGMLL----GEELSQAYA-SGDVFVMPSE 400 (526)
Q Consensus 346 ~~l----~~~~l~ivG~g~------~~------~~l~~l~~~~----~V~~~g~v~----~~~l~~~~~-~aDv~v~ps~ 400 (526)
+++ ++++|+|+|+|. .. +.+.+++++. +|.|+|... .+++..+++ ++|++|+||.
T Consensus 596 a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~ 675 (815)
T PLN00142 596 GKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL 675 (815)
T ss_pred HHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc
Confidence 866 368999999762 11 2344455543 588888543 356777776 4799999999
Q ss_pred CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHh----hhCHHHHHHHHHHHHHHH-
Q 009759 401 SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL----LYNQELRETMGQAARQEM- 475 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~l----l~d~~~~~~~~~~a~~~~- 475 (526)
+|+||++++||||||+|||+|+.||..|++ .++.+|+++++.|+++++++|.++ +.|++.+++|+++|++.+
T Consensus 676 ~EgFGLvvLEAMA~GlPVVATdvGG~~EIV---~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~ 752 (815)
T PLN00142 676 YEAFGLTVVEAMTCGLPTFATCQGGPAEII---VDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIY 752 (815)
T ss_pred ccCCCHHHHHHHHcCCCEEEcCCCCHHHHh---cCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999998765 469999999999999998
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHHH
Q 009759 476 EKYDWRAATRTIRNEQYNAAIWFW 499 (526)
Q Consensus 476 ~~fs~~~~~~~~~~~ly~~~l~~~ 499 (526)
++|||+.+++++++ + ..+-..|
T Consensus 753 e~FSWe~~A~rll~-L-~~~~~~~ 774 (815)
T PLN00142 753 ECYTWKIYAERLLT-L-GGVYGFW 774 (815)
T ss_pred HhCCHHHHHHHHHH-H-Hhhcchh
Confidence 68999999999983 3 2444444
No 53
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.1e-35 Score=296.79 Aligned_cols=365 Identities=16% Similarity=0.239 Sum_probs=251.6
Q ss_pred CCCCCcEEEEEeccCCCC-ccCchHHHHHHHHHHHHHCCC--eEEEEEeCCCCC-cc-------ccCceec---------
Q 009759 114 NNSRPRRIALFVEPSPFS-YVSGYKNRFQNFIKYLREMGD--EVMVVTTHEGVP-QE-------FYGAKLI--------- 173 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~-~~gG~~~~~~~l~~~L~~~G~--~V~vi~~~~~~~-~~-------~~~~~~~--------- 173 (526)
+..++++|+++.. .. ..||+++.++..+.+|++.|+ +|.+++.+.+.. ++ ..++++.
T Consensus 29 ~~~~~~~v~f~HP---~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~ 105 (463)
T PLN02949 29 RRSRKRAVGFFHP---YTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLR 105 (463)
T ss_pred ccCCCcEEEEECC---CCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEec
Confidence 3556678888854 34 455999999999999999999 666666442211 11 1111110
Q ss_pred cccccCCCccccccc---hhcccHHHHHHHHhcCCCEEEECCCc-hHHHHHHHHHHhcCCCEEEEEecCCccc--c----
Q 009759 174 GSRSFPCPWYQKVPL---SLALSPRIISEVARFKPDIIHASSPG-IMVFGALIIAKLLCVPIVMSYHTHVPVY--I---- 243 (526)
Q Consensus 174 ~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~pDiV~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~--~---- 243 (526)
....++...+.+... .+......++.+.+..|| |++.... .+.+ .+.+..+.|+++++|...-.. .
T Consensus 106 ~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~---pl~~~~~~~v~~yvH~p~~~~dm~~~v~ 181 (463)
T PLN02949 106 KRKWIEEETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTY---PLARLFGCKVVCYTHYPTISSDMISRVR 181 (463)
T ss_pred cccccccccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHH---HHHHhcCCcEEEEEeCCcchHHHHHHHh
Confidence 001111111111111 111222233334444555 5555432 2222 223456899999999643111 0
Q ss_pred -------------cccccccccchHH----HHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCC
Q 009759 244 -------------PRYTFSWLVKPMW----LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPR 306 (526)
Q Consensus 244 -------------~~~~~~~~~~~~~----~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~ 306 (526)
...........++ .++....+.+|.++++|+..++.+.+.+.. ..++.+++||+|.+.+...
T Consensus 182 ~~~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~~~~ 260 (463)
T PLN02949 182 DRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGLQAL 260 (463)
T ss_pred hcccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHcccC
Confidence 0000011111111 244555688999999999999999887653 3578999999987655321
Q ss_pred cccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC--------CCcEEEEEeCCcc------HHHHHHHhcCC
Q 009759 307 FRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--------PEARIAFIGDGPY------REELEKMFTGM 372 (526)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l--------~~~~l~ivG~g~~------~~~l~~l~~~~ 372 (526)
... ...++..++++||+.++||++.+++|+.++ ++++|+|+|++.. .+++++++++.
T Consensus 261 ~~~---------~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l 331 (463)
T PLN02949 261 PLE---------RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKEL 331 (463)
T ss_pred Ccc---------ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHc
Confidence 110 123457899999999999999999998753 5799999998632 24567766643
Q ss_pred ----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC-ceecccCCCceeEeeCCCCH
Q 009759 373 ----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP-DIIPEDQDGKIGYLFNPGDL 447 (526)
Q Consensus 373 ----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~-e~v~~~~~~~~g~~~~~~d~ 447 (526)
+|.|+|+++.+++.++|+.||++|+|+..|+||++++||||+|+|||+++.||.. |++.+..++.+|++++ |+
T Consensus 332 ~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~ 409 (463)
T PLN02949 332 GLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TV 409 (463)
T ss_pred CCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--CH
Confidence 6999999999999999999999999999999999999999999999999999864 7773222367899885 99
Q ss_pred HHHHHHHHHhhh-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 009759 448 DDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 498 (526)
Q Consensus 448 ~~la~ai~~ll~-d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~~ 498 (526)
++++++|.++++ +++.+++|++++++.+++|||+.+++++. +.|+++++.
T Consensus 410 ~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~-~~i~~l~~~ 460 (463)
T PLN02949 410 EEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFK-DAIRPILNS 460 (463)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHhh
Confidence 999999999998 67889999999999998899999999997 788887764
No 54
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.3e-35 Score=294.59 Aligned_cols=291 Identities=18% Similarity=0.210 Sum_probs=223.4
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE-EecCCcccccccccccccchHHHHHH--HHhhcCcE
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS-YHTHVPVYIPRYTFSWLVKPMWLVIK--FLHRAADL 268 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~-~h~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ad~ 268 (526)
....+..++++.+||+||+|......+ +.+.++..++|++++ .|...+.. ........+....+ .+...+|
T Consensus 268 ~~~~l~~~ir~~rpDIVHt~~~~a~l~-g~laA~lagvpviv~~~h~~~~~~----~~r~~~~e~~~~~~a~~i~~~sd- 341 (578)
T PRK15490 268 GIKHLVPHLCERKLDYLSVWQDGACLM-IALAALIAGVPRIQLGLRGLPPVV----RKRLFKPEYEPLYQALAVVPGVD- 341 (578)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccHHH-HHHHHHhcCCCEEEEeecccCCcc----hhhHHHHHHHHhhhhceeEecch-
Confidence 345788899999999999998654333 555677789999765 55522211 10101010011111 1234455
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH-HHHHhhcCC-CCCCcEEEEEecccccccHHHHHHHHH
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-EMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMD 346 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~~vG~l~~~Kg~~~li~a~~ 346 (526)
+++.|...++.+.+.++.+.+++.+|+||+|.+.|.+..... ..+..+... .++.++|+++|++...||...+++++.
T Consensus 342 ~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a 421 (578)
T PRK15490 342 FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAA 421 (578)
T ss_pred hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHH
Confidence 678888888988888777889999999999998887653221 222222111 345678999999999999999998886
Q ss_pred hC----CCcEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcE
Q 009759 347 RL----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 418 (526)
Q Consensus 347 ~l----~~~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~Pv 418 (526)
.+ ++++|+|+|+|+..+++++++++. +|+|+|+. +|+..+|+.+|++|+||.+||+|++++|||++|+||
T Consensus 422 ~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPV 499 (578)
T PRK15490 422 RYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPV 499 (578)
T ss_pred HHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCE
Confidence 54 789999999999888888877643 69999996 689999999999999999999999999999999999
Q ss_pred EEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHH---HHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 009759 419 VGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL---EPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 419 I~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai---~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~ 494 (526)
|+++.||..|++ .++.+|++++++|++++++++ ..+..+.+.+..+++++++++ ++|||+.++++|. ++|.+
T Consensus 500 VATdvGG~~EiV---~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~-ki~~~ 575 (578)
T PRK15490 500 ISTPAGGSAECF---IEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFV-KTIAS 575 (578)
T ss_pred EEeCCCCcHHHc---ccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHh
Confidence 999999999999 899999999999998888876 344445555667899999999 5899999999997 78764
No 55
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=7.8e-37 Score=279.93 Aligned_cols=380 Identities=23% Similarity=0.335 Sum_probs=278.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc----cCceeccccccCCCccccccchhcccH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF----YGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
++|+++++. .+|..||.+.+++.+.+.|.+.||.|.+++..++..... .+.+++..+.....-...++.-+..+.
T Consensus 1 ~~i~mVsdf-f~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~P 79 (426)
T KOG1111|consen 1 SRILMVSDF-FYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFP 79 (426)
T ss_pred CcceeeCcc-cccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCc
Confidence 478888885 569999999999999999999999999999877654211 112222222111111111222344455
Q ss_pred HHHHHHHhcCCCEEEECCCch-HHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 195 RIISEVARFKPDIIHASSPGI-MVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
-++..+.+++..|||.|++.. +...+++.++..|.++|++-|..+....-.. ....++....+...|.+||+|
T Consensus 80 llr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad~~s------i~~n~ll~~sL~~id~~IcVs 153 (426)
T KOG1111|consen 80 LLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFADIGS------ILTNKLLPLSLANIDRIICVS 153 (426)
T ss_pred ccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccchhh------hhhcceeeeeecCCCcEEEEe
Confidence 677777777999999998643 3455777888999999999998654221111 111133455678899999999
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P 349 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~ 349 (526)
..-++...-.+..+.+++.+|||.++...|.|..... ...+...++.++|+..+||+|++++++.++ |
T Consensus 154 htskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~--------~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p 225 (426)
T KOG1111|consen 154 HTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK--------PSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHP 225 (426)
T ss_pred ecCCCceEEEeccCHhHeeeccceeeccccccCcccc--------CCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCC
Confidence 9888876656666789999999999999999854331 233447899999999999999999988665 8
Q ss_pred CcEEEEEeCCccHHHHHHHhc----CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 350 EARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~~----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
+++|+|+|+||.+..++++.+ +.+|.++|.++++++.+.|.+-|++++||..|.|+++++||++||+|||++.+||
T Consensus 226 ~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGG 305 (426)
T KOG1111|consen 226 EVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGG 305 (426)
T ss_pred CeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 999999999995544444444 4579999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH-----
Q 009759 426 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFW----- 499 (526)
Q Consensus 426 ~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l~~~----- 499 (526)
++|+++ ++ -.+....+++++++++++++..-. ..-....+.+ +.|+|++++++-+ .+|.++....
T Consensus 306 IpeVLP---~d--~i~~~~~~~~dl~~~v~~ai~~~~---~~p~~~h~~v~~~y~w~dVa~rTe-kvy~r~~~t~~~~~~ 376 (426)
T KOG1111|consen 306 IPEVLP---ED--MITLGEPGPDDLVGAVEKAITKLR---TLPLEFHDRVKKMYSWKDVAERTE-KVYDRAATTSIRNEQ 376 (426)
T ss_pred ccccCC---cc--ceeccCCChHHHHHHHHHHHHHhc---cCchhHHHHHHHhccHHHHHHHHH-HHHHHHhhccCcCHH
Confidence 999993 22 223444478888888888875321 1123345556 4699999999996 8998887643
Q ss_pred --------HH---hhhcccCchhhhhhhcCCCCc
Q 009759 500 --------RK---KRAQLLRPIQWLAKRIFPSAE 522 (526)
Q Consensus 500 --------~~---~~~~~~~~~~~~~~~~~~~~~ 522 (526)
++ +..-..-++.|+...+++-|+
T Consensus 377 ~r~~~~~~~g~~g~~~~v~~~i~~ll~~Ll~l~~ 410 (426)
T KOG1111|consen 377 DRLKIWLYRGVGGKLFHVLGPINYLLKRLLELPE 410 (426)
T ss_pred HHHHHHhhccCCceEEEEehHHHHHHHHHhcccC
Confidence 11 223344567777777777665
No 56
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=3.3e-35 Score=295.91 Aligned_cols=350 Identities=17% Similarity=0.146 Sum_probs=255.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCcc--ccCce-----------e--------
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQE--FYGAK-----------L-------- 172 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~--~~~~~-----------~-------- 172 (526)
+..+.+|+||+.... |...|...--+--|.+|++. |++|+++.+.-..... .++.. .
T Consensus 319 ~~~~r~~~ivTtAsl-PWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r 397 (794)
T PLN02501 319 SDGKRHVAIVTTASL-PWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEER 397 (794)
T ss_pred ccCCCeEEEEEcccC-cccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHh
Confidence 445578999987654 77788777777778889888 7999999875321100 00000 0
Q ss_pred ccc-cccCCCc----cccccchhcccHHHHHHHHhcCCCEEEECCCchHHHH--HHHHHHhcCCCEEEEEecCCcccccc
Q 009759 173 IGS-RSFPCPW----YQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFG--ALIIAKLLCVPIVMSYHTHVPVYIPR 245 (526)
Q Consensus 173 ~~~-~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~ 245 (526)
.+. ..+.+.+ +.....++.-...+.+.+..++|||||++.|...++. +..++++.+ |+|..+|+.++.|...
T Consensus 398 ~g~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~eYl~~ 476 (794)
T PLN02501 398 IGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR 476 (794)
T ss_pred cCCCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcHHHHhH
Confidence 000 0111111 1112223444568899999999999999999888877 788888888 8999999999888877
Q ss_pred cccccccchHHHHHHHHhhc--CcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCC
Q 009759 246 YTFSWLVKPMWLVIKFLHRA--ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDK 323 (526)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~--ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~ 323 (526)
+...+.......+....+.. ||.++++|..+.+ + +...+ ...||||.+.|.|...... +.+++. ....
T Consensus 477 y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L------~~~vI-~nVnGVDte~F~P~~r~~~-~r~lgi-~~~~ 546 (794)
T PLN02501 477 EKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD-L------PKSVI-CNVHGVNPKFLKIGEKVAE-ERELGQ-QAFS 546 (794)
T ss_pred hcchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-h------cccce-eecccccccccCCcchhHH-HHhcCC-cccc
Confidence 76555554333222233332 8999999977763 3 11222 2237999999988644222 233332 2233
Q ss_pred cEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCccHHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEe
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVM 397 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ 397 (526)
..++|+||+.+.||++.|+++++.+ ++++|+|+|+|+..+++++++.+. +|.|+|.. ++...+|+.+|++|+
T Consensus 547 kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~--dd~~~lyasaDVFVl 624 (794)
T PLN02501 547 KGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGR--DHADDSLHGYKVFIN 624 (794)
T ss_pred CceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCC--CCHHHHHHhCCEEEE
Confidence 4589999999999999999999765 589999999999999999888765 48888887 566789999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHh
Q 009759 398 PSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 477 (526)
Q Consensus 398 ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~ 477 (526)
||..|++|++++||||||+|||+++.+|... + .++.+|+++ +|.++++++|.+++.++..+..+. ....
T Consensus 625 PS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-V---~~g~nGll~--~D~EafAeAI~~LLsd~~~rl~~~-----a~~~ 693 (794)
T PLN02501 625 PSISDVLCTATAEALAMGKFVVCADHPSNEF-F---RSFPNCLTY--KTSEDFVAKVKEALANEPQPLTPE-----QRYN 693 (794)
T ss_pred CCCcccchHHHHHHHHcCCCEEEecCCCCce-E---eecCCeEec--CCHHHHHHHHHHHHhCchhhhHHH-----HHhh
Confidence 9999999999999999999999999998544 6 567788876 599999999999999876443322 1348
Q ss_pred CCHHHHHHHHHH
Q 009759 478 YDWRAATRTIRN 489 (526)
Q Consensus 478 fs~~~~~~~~~~ 489 (526)
+||+++++++++
T Consensus 694 ~SWeAaadrLle 705 (794)
T PLN02501 694 LSWEAATQRFME 705 (794)
T ss_pred CCHHHHHHHHHH
Confidence 999999999984
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=5.1e-35 Score=290.59 Aligned_cols=340 Identities=27% Similarity=0.328 Sum_probs=259.6
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||++++...+ .||++..+..++++|.+.||+|.+++................ ....................+.+.
T Consensus 1 kIl~~~~~~~---~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (353)
T cd03811 1 KILFVIPSLG---GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVK-LIPVRVLKLKSLRDLLAILRLRRL 76 (353)
T ss_pred CeEEEeeccc---CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchh-hhceeeeecccccchhHHHHHHHH
Confidence 6888887533 699999999999999999999999997654332211111000 000000111122223445678888
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
+++.+||+|+++......+...+..+. ++|+++++|+............ ....+..++.+|.++++|+..++.
T Consensus 77 ~~~~~~dii~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~ii~~s~~~~~~ 149 (353)
T cd03811 77 LRKEKPDVVISHLTTTPNVLALLAARL-GTKLIVWEHNSLSLELKRKLRL------LLLIRKLYRRADKIVAVSEGVKED 149 (353)
T ss_pred HHhcCCCEEEEcCccchhHHHHHHhhc-CCceEEEEcCcchhhhccchhH------HHHHHhhccccceEEEeccchhhh
Confidence 888999999999871222222333333 8999999999775433222111 145788889999999999999999
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCC----CcEEEE
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP----EARIAF 355 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~----~~~l~i 355 (526)
+.+.++.+..++.+++||+|.+.+.+...... ... ...++.+++++|++...||++.++++++.+. +++|++
T Consensus 150 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i 225 (353)
T cd03811 150 LLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL---ELG-IPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVI 225 (353)
T ss_pred HHHhhcCCccccEEecCCcChhhcCcccchhh---hcC-CCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEE
Confidence 99988755689999999999987765432211 111 2457788999999999999999999999884 799999
Q ss_pred EeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceec
Q 009759 356 IGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIP 431 (526)
Q Consensus 356 vG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~ 431 (526)
+|.++..+.+++.+... +|.+.|++ +++.++|+.||++|+||..|++|++++|||++|+|||+++.|+..|++
T Consensus 226 ~G~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i- 302 (353)
T cd03811 226 LGDGPLREELEALAKELGLADRVHFLGFQ--SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREIL- 302 (353)
T ss_pred EcCCccHHHHHHHHHhcCCCccEEEeccc--CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHh-
Confidence 99988777777666543 69999997 578999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeEeeCCCCHHHH---HHHHHHhhhCHHHHHHHHHHHHHHH-HhCC
Q 009759 432 EDQDGKIGYLFNPGDLDDC---LSKLEPLLYNQELRETMGQAARQEM-EKYD 479 (526)
Q Consensus 432 ~~~~~~~g~~~~~~d~~~l---a~ai~~ll~d~~~~~~~~~~a~~~~-~~fs 479 (526)
.++.+|++++++|.+++ ++++..+..+++.++++++++++.+ ++|+
T Consensus 303 --~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 303 --EDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred --cCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999 7888888889999999999777776 5665
No 58
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=1.5e-34 Score=293.03 Aligned_cols=343 Identities=18% Similarity=0.222 Sum_probs=240.3
Q ss_pred EEEEeccCCCCccC-chHHHHHHHHHHHHHC--CCeEEEEEeCCCCCc---------cc-----cCceeccc----cccC
Q 009759 121 IALFVEPSPFSYVS-GYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQ---------EF-----YGAKLIGS----RSFP 179 (526)
Q Consensus 121 Iliv~~~~p~~~~g-G~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~---------~~-----~~~~~~~~----~~~~ 179 (526)
|+|+. |....| |+++.++..+.+|++. ||+|++++....... .+ .+..+..+ ..++
T Consensus 3 ~~f~h---p~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 79 (419)
T cd03806 3 VGFFH---PYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVE 79 (419)
T ss_pred EEEEC---CCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeec
Confidence 45553 344445 9999999999999999 899999998765422 11 11111111 1111
Q ss_pred CCccccccchhcccHHHH---HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcc----ccccc------
Q 009759 180 CPWYQKVPLSLALSPRII---SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV----YIPRY------ 246 (526)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~---~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~~~~~------ 246 (526)
...+.+......+...+. +.+.+.+||+++.+......+. +.....++|+|+++| +|. .....
T Consensus 80 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~--~~~~~~~~~~i~y~h--~P~~~~d~l~~~~~~~~~ 155 (419)
T cd03806 80 ASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYP--LVRLLGGCPVGAYVH--YPTISTDMLQKVRSREAS 155 (419)
T ss_pred cccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHH--HHHHhcCCeEEEEec--CCcchHHHHHHHhhcccc
Confidence 112222222222222222 2333458999988874333332 222334889999999 441 11000
Q ss_pred -------cccc---cc-----chHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHH
Q 009759 247 -------TFSW---LV-----KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE 311 (526)
Q Consensus 247 -------~~~~---~~-----~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~ 311 (526)
.... .. +....+++..++.+|.++++|+..++.+.+.+.. .+++.+|+||+|.+.+.+....
T Consensus 156 ~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~-~~~~~vi~~gvd~~~~~~~~~~-- 232 (419)
T cd03806 156 YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKR-NTKPSIVYPPCDVEELLKLPLD-- 232 (419)
T ss_pred ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCc-CCCcEEEcCCCCHHHhcccccc--
Confidence 0000 11 1112467788899999999999999999887653 3589999999998776543210
Q ss_pred HHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C-----CcEEEEEeCCc------cHHHHHHHhcC----C
Q 009759 312 MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P-----EARIAFIGDGP------YREELEKMFTG----M 372 (526)
Q Consensus 312 ~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~-----~~~l~ivG~g~------~~~~l~~l~~~----~ 372 (526)
...+..+|+|+|++.+.||++.+++|+..+ + +++|+|+|++. +.+++++++++ .
T Consensus 233 -------~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~ 305 (419)
T cd03806 233 -------EKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLED 305 (419)
T ss_pred -------cccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCC
Confidence 134567899999999999999999999876 2 48999999763 34566666653 2
Q ss_pred CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC-CceecccC---CCceeEeeCCCCHH
Q 009759 373 PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI-PDIIPEDQ---DGKIGYLFNPGDLD 448 (526)
Q Consensus 373 ~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~-~e~v~~~~---~~~~g~~~~~~d~~ 448 (526)
+|+|+|.++++++..+|+.||++|+|+..|+||++++||||||+|||+++.||. .+++ + ++.+|++++ |++
T Consensus 306 ~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv---~~~~~g~~G~l~~--d~~ 380 (419)
T cd03806 306 KVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIV---VPWDGGPTGFLAS--TAE 380 (419)
T ss_pred eEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchhee---eccCCCCceEEeC--CHH
Confidence 699999999999999999999999999999999999999999999999998764 5788 6 789999985 999
Q ss_pred HHHHHHHHhhhCHH-HHHHHHHHHHHHHHhCCHHHHHH
Q 009759 449 DCLSKLEPLLYNQE-LRETMGQAARQEMEKYDWRAATR 485 (526)
Q Consensus 449 ~la~ai~~ll~d~~-~~~~~~~~a~~~~~~fs~~~~~~ 485 (526)
+++++|.+++++++ .++.+++++++..++|||+.+.+
T Consensus 381 ~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 381 EYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 99999999999654 55555555555447999998753
No 59
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=2.3e-34 Score=287.23 Aligned_cols=334 Identities=21% Similarity=0.307 Sum_probs=240.1
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc---CceeccccccCCCccccccchhcccHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY---GAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
||+++.+.+ ...||+++.+.++++.|.+ .+|.............. ..........+... ........+...+
T Consensus 1 ~i~~~~~~~--~~~GG~E~~~~~l~~~l~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 75 (351)
T cd03804 1 KVAIVHDWL--VNIGGGEKVVEALARLFPD--ADIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFAR-RRYRKYLPLMPLA 75 (351)
T ss_pred CEEEEEecc--ccCCCHHHHHHHHHHhCCC--CCEEEEeecCCccchhhcCCceeechhhhchhhH-hhHhhhCchhhHH
Confidence 688887653 4569999999999999865 23333322222111111 01111111111110 1111122233344
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCc-------cccccccc------ccccchHHHHHHHHh
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVP-------VYIPRYTF------SWLVKPMWLVIKFLH 263 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~ 263 (526)
.+.+...++|+|+++...... .+....++|.++++|.... .+...... .+....+...++..+
T Consensus 76 ~~~~~~~~~D~v~~~~~~~~~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (351)
T cd03804 76 IEQFDLSGYDLVISSSHAVAK----GVITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSA 151 (351)
T ss_pred HHhccccCCCEEEEcCcHHhc----cccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHh
Confidence 555666799999988753221 1124567889999886321 11111100 112223445667778
Q ss_pred hcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHH
Q 009759 264 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 343 (526)
Q Consensus 264 ~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~ 343 (526)
+.+|.++++|+.+++.+.+.+. .+..+++||+|.+.+.+. ......++|+|++.+.||++.+++
T Consensus 152 ~~~d~ii~~S~~~~~~~~~~~~---~~~~vi~~~~d~~~~~~~-------------~~~~~~il~~G~~~~~K~~~~li~ 215 (351)
T cd03804 152 ARVDYFIANSRFVARRIKKYYG---RDATVIYPPVDTDRFTPA-------------EEKEDYYLSVGRLVPYKRIDLAIE 215 (351)
T ss_pred cCCCEEEECCHHHHHHHHHHhC---CCcEEECCCCCHhhcCcC-------------CCCCCEEEEEEcCccccChHHHHH
Confidence 9999999999999999987764 356899999998877654 123456899999999999999999
Q ss_pred HHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 344 VMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 344 a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
+++.++ ++|+|+|+|+..+.+++ ....+|+++|+++++++.++|+.||++|+|+. |++|++++|||+||+|||+++.
T Consensus 216 a~~~~~-~~l~ivG~g~~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~ 292 (351)
T cd03804 216 AFNKLG-KRLVVIGDGPELDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGK 292 (351)
T ss_pred HHHHCC-CcEEEEECChhHHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCC
Confidence 999997 99999999988777777 33458999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 487 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~ 487 (526)
||..|++ .++.+|++++++|+++++++|.++++|++ .++++.++.+++|+|++..+++
T Consensus 293 ~~~~e~i---~~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 293 GGALETV---IDGVTGILFEEQTVESLAAAVERFEKNED---FDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred CCCccee---eCCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHHHHHHHHHhcCHHHHHHHh
Confidence 9999999 88899999999999999999999999884 2334455556789999998775
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=1.9e-32 Score=277.38 Aligned_cols=266 Identities=24% Similarity=0.307 Sum_probs=218.2
Q ss_pred cCCCEEEECCCchHHHHHHHHHHhcCCC-EEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHH
Q 009759 203 FKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 281 (526)
Q Consensus 203 ~~pDiV~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~ 281 (526)
.++|++|.+......+....+.+..+.+ +|.+.|+..... . ..........+.+++.+|.++++|+..++.+.
T Consensus 126 ~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~--~----~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~ 199 (407)
T cd04946 126 GQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHGYDLYE--D----RYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQ 199 (407)
T ss_pred cCceEEEEecCchHHHHHHHHHHhcCCceEEEEeccchhhh--h----hccccchHHHHHHHhcCCEEEECCHHHHHHHH
Confidence 4567888876555555555555666655 899999743211 0 11111224456678999999999999999999
Q ss_pred HhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C--CcEEEE
Q 009759 282 AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P--EARIAF 355 (526)
Q Consensus 282 ~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~--~~~l~i 355 (526)
+.++...+++.+++||++...+.+.. ...+.+.++++|++.+.||++.+++++..+ | ++++++
T Consensus 200 ~~~~~~~~ki~vi~~gv~~~~~~~~~-----------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~i 268 (407)
T cd04946 200 KRYPAYKEKIKVSYLGVSDPGIISKP-----------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTH 268 (407)
T ss_pred HHCCCccccEEEEECCcccccccCCC-----------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEE
Confidence 88776778999999999887654331 234678899999999999999999999877 3 466788
Q ss_pred EeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHc--CcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCce
Q 009759 356 IGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 429 (526)
Q Consensus 356 vG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~ 429 (526)
+|+|+..+.++++++.. +|.++|+++++++.++|+. +|++++||..||+|++++|||++|+|||++++||..|+
T Consensus 269 iG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~ 348 (407)
T cd04946 269 IGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEI 348 (407)
T ss_pred EeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHH
Confidence 99999888888877532 5999999999999999975 78999999999999999999999999999999999999
Q ss_pred ecccCCCceeEeeCC-CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 009759 430 IPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 488 (526)
Q Consensus 430 v~~~~~~~~g~~~~~-~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~ 488 (526)
+ .++.+|+++++ +|+++++++|.++++|++.+++|+++|++.+ ++|+|+...+++.
T Consensus 349 i---~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 349 V---DNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred h---cCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 9 88889999876 4899999999999999999999999999999 5899999988874
No 61
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.7e-32 Score=273.09 Aligned_cols=318 Identities=20% Similarity=0.204 Sum_probs=225.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC-eEEEEEeCCCCCc-c---ccCceeccccccCCCccccccchhc--
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD-EVMVVTTHEGVPQ-E---FYGAKLIGSRSFPCPWYQKVPLSLA-- 191 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~-~V~vi~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~-- 191 (526)
-|+.+++- ...|.+.++..++..|.++|+ +|++++....... + ..++.+..... +. ..........
T Consensus 5 ~~~~~~~~-----~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~-~~-~~~~~~~~~~~~ 77 (371)
T PLN02275 5 GRAAVVVL-----GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ-PR-LLQRLPRVLYAL 77 (371)
T ss_pred cEEEEEEe-----cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC-cc-cccccccchHHH
Confidence 35555543 226778889999999999875 7999987553221 1 12233333322 11 1111111111
Q ss_pred --------ccHHHHHH--HHhcCCCEEEECCCchH--HHHHHHHHHhcCCCEEEEEecCCcccc--cccccccccchHHH
Q 009759 192 --------LSPRIISE--VARFKPDIIHASSPGIM--VFGALIIAKLLCVPIVMSYHTHVPVYI--PRYTFSWLVKPMWL 257 (526)
Q Consensus 192 --------~~~~l~~~--l~~~~pDiV~~~~~~~~--~~~~~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~~~~~~~ 257 (526)
....+... .+..+||+||++.+... .+.+.++++..+.|+|+++|+.+.... .........+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 157 (371)
T PLN02275 78 ALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRW 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHH
Confidence 11122222 35679999999875432 234556677789999999998642111 11111223345567
Q ss_pred HHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccccccc
Q 009759 258 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 337 (526)
Q Consensus 258 ~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg 337 (526)
+++.+++.+|.++++|+.+++.+.+.++.+ +.+|+|+. .+.|.+...... . ..++..+++++|++.+.||
T Consensus 158 ~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~~~~~----~--~~~~~~~i~~~grl~~~k~ 227 (371)
T PLN02275 158 YERHYGKMADGHLCVTKAMQHELDQNWGIR---ATVLYDQP-PEFFRPASLEIR----L--RPNRPALVVSSTSWTPDED 227 (371)
T ss_pred HHHHHHhhCCEEEECCHHHHHHHHHhcCCC---eEEECCCC-HHHcCcCCchhc----c--cCCCcEEEEEeCceeccCC
Confidence 889999999999999999999998765432 88999985 455554322111 1 1234457789999999999
Q ss_pred HHHHHHHHHhC---------------------CCcEEEEEeCCccHHHHHHHhcCC---CeEEec-ccChhhHHHHHHcC
Q 009759 338 LDFLKRVMDRL---------------------PEARIAFIGDGPYREELEKMFTGM---PAVFTG-MLLGEELSQAYASG 392 (526)
Q Consensus 338 ~~~li~a~~~l---------------------~~~~l~ivG~g~~~~~l~~l~~~~---~V~~~g-~v~~~~l~~~~~~a 392 (526)
++.+++|+..+ ++++|+|+|+|+..+++++++++. ++.+.+ +++.+++..+|+.|
T Consensus 228 ~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~a 307 (371)
T PLN02275 228 FGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSA 307 (371)
T ss_pred HHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhC
Confidence 99999998754 579999999999999999888754 477765 68999999999999
Q ss_pred cEEEecCC---CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 393 DVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 393 Dv~v~ps~---~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
|++|+|+. .|++|++++||||||+|||+++.||.+|++ +++.+|++++ |+++++++|.+++
T Consensus 308 Dv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv---~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 308 DLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELV---KDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred CEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHc---cCCCCeEEEC--CHHHHHHHHHHhC
Confidence 99998642 488999999999999999999999999999 8999999997 7999999998874
No 62
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=1.6e-32 Score=281.18 Aligned_cols=280 Identities=19% Similarity=0.212 Sum_probs=213.9
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
...+.+.+...++||+|++.+...... ++....++|+++++|+..-.......................+.+|.++++
T Consensus 200 ~~~f~~~L~~~~~di~i~dr~~~~~~~--~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~ 277 (500)
T TIGR02918 200 IAYFLKQLNLTKKDIIILDRSTGIGQA--VLENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITA 277 (500)
T ss_pred HHHHHHHHhCCCCCEEEEcCCcccchH--HHhcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEEC
Confidence 344445555668999999886544332 334556899999999743211111100000011111112235678999999
Q ss_pred ChhHHHHHHHhcc---cCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC-
Q 009759 273 SVAIGKDLEAARV---TAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL- 348 (526)
Q Consensus 273 S~~~~~~l~~~~~---~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l- 348 (526)
|+..++.+.+.+. ....++.++|||++...+.+. ...+...|+++||+.+.||++.+++|+..+
T Consensus 278 S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~------------~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~ 345 (500)
T TIGR02918 278 TDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE------------QERKPFSIITASRLAKEKHIDWLVKAVVKAK 345 (500)
T ss_pred CHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc------------cccCCeEEEEEeccccccCHHHHHHHHHHHH
Confidence 9998888776542 235789999999875544322 123456899999999999999999999754
Q ss_pred ---CCcEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 349 ---PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 349 ---~~~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
|+++|+|+|+|+..+.+++++++. +|.++|++ ++.++|+.||++|+||..||||++++||||||+|||++
T Consensus 346 ~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~ 422 (500)
T TIGR02918 346 KSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGF 422 (500)
T ss_pred hhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEe
Confidence 789999999999888888887654 58999975 68899999999999999999999999999999999999
Q ss_pred CCC-CCCceecccCCCceeEeeCCC----C----HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 422 RAG-GIPDIIPEDQDGKIGYLFNPG----D----LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 422 ~~g-g~~e~v~~~~~~~~g~~~~~~----d----~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
+++ |.+|++ +++.+|++++.+ | +++++++|.+++ +++.+++|++++++.+++|||+.+++++. +++
T Consensus 423 dv~~G~~eiI---~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~~~~~~~~~~~a~~~a~~fs~~~v~~~w~-~ll 497 (500)
T TIGR02918 423 DVNYGNPTFI---EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-NSNDIDAFHEYSYQIAEGFLTANIIEKWK-KLV 497 (500)
T ss_pred cCCCCCHHHc---cCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHH
Confidence 986 899999 899999999842 3 889999999999 45678999999999889999999999997 677
Q ss_pred HH
Q 009759 493 NA 494 (526)
Q Consensus 493 ~~ 494 (526)
++
T Consensus 498 ~~ 499 (500)
T TIGR02918 498 RE 499 (500)
T ss_pred hh
Confidence 65
No 63
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-31 Score=263.61 Aligned_cols=377 Identities=21% Similarity=0.224 Sum_probs=266.3
Q ss_pred cEEEEE-eccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc-cCc-ee-----------------------
Q 009759 119 RRIALF-VEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF-YGA-KL----------------------- 172 (526)
Q Consensus 119 mkIliv-~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~-~~~-~~----------------------- 172 (526)
|||+++ .+..|+.+.||.+.++..+.++|++.|++|.|+.+.+...... .+. +.
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 889888 5667999999999999999999999999999999876421110 000 00
Q ss_pred --ccccccCCC-cccc----ccc-------hhcccHHHHHHHHh----cCCCEEEECCCchHHHHHHHHHH---hcCCCE
Q 009759 173 --IGSRSFPCP-WYQK----VPL-------SLALSPRIISEVAR----FKPDIIHASSPGIMVFGALIIAK---LLCVPI 231 (526)
Q Consensus 173 --~~~~~~~~~-~~~~----~~~-------~~~~~~~l~~~l~~----~~pDiV~~~~~~~~~~~~~~~~~---~~~~p~ 231 (526)
.....+..+ .+.+ ... ...+.......+.. ..|||||+|+|+.....+++... ...+|.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~t 160 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPT 160 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCe
Confidence 000000000 0010 000 01111122233322 36999999999877665554333 558999
Q ss_pred EEEEecCCccccccc------ccc--------cccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh-cc--------cCC
Q 009759 232 VMSYHTHVPVYIPRY------TFS--------WLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA-RV--------TAA 288 (526)
Q Consensus 232 v~~~h~~~~~~~~~~------~~~--------~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~-~~--------~~~ 288 (526)
|+|+|+..-...... ... .........++..+..+|.+.++|+..++++... ++ ...
T Consensus 161 VfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~ 240 (487)
T COG0297 161 VFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRS 240 (487)
T ss_pred EEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhcc
Confidence 999998432211110 000 0000112567788899999999999999988721 11 123
Q ss_pred CcEEEeecCCCCCCCCCCccc------------------HHHHHhhcCC-CCCCcEEEEEecccccccHHHHHHHHHhC-
Q 009759 289 NKIRIWKKGVDSESFHPRFRS------------------SEMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL- 348 (526)
Q Consensus 289 ~ki~vi~ngid~~~~~~~~~~------------------~~~~~~~~~~-~~~~~~i~~vG~l~~~Kg~~~li~a~~~l- 348 (526)
.++..|.||+|.+.|+|..+. ..+..++++. ..+.+.+.++||+..+||+|.+++++..+
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 688999999999999886442 2334445554 33679999999999999999999999877
Q ss_pred -CCcEEEEEeCCc--cHHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 349 -PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 349 -~~~~l~ivG~g~--~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
..++++++|.|+ .++.+..+.+.. ++.+....+..-.+.+|+.||++++||++|+||++.++||++|+++|+..+
T Consensus 321 ~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~t 400 (487)
T COG0297 321 EQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRET 400 (487)
T ss_pred HhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEccc
Confidence 468999999883 455666666644 355555566667789999999999999999999999999999999999999
Q ss_pred CCCCceeccc-----CCCceeEeeCCCCHHHHHHHHHHhhh---CHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 009759 424 GGIPDIIPED-----QDGKIGYLFNPGDLDDCLSKLEPLLY---NQEL-RETMGQAARQEMEKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 424 gg~~e~v~~~-----~~~~~g~~~~~~d~~~la~ai~~ll~---d~~~-~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~ 494 (526)
||++|.+.+- ....+|+++.+.++++++.+|.+.+. ++.. ++.+..++.. .+|+|+..++++. ++|+.
T Consensus 401 GGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~-~lY~~ 477 (487)
T COG0297 401 GGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYV-ELYKP 477 (487)
T ss_pred CCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHH-HHHHH
Confidence 9999999321 12579999999999999999998865 4333 6666665554 5899999999997 99999
Q ss_pred HHHH
Q 009759 495 AIWF 498 (526)
Q Consensus 495 ~l~~ 498 (526)
++..
T Consensus 478 ~~~~ 481 (487)
T COG0297 478 LLSK 481 (487)
T ss_pred Hhcc
Confidence 8764
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=9.5e-31 Score=255.16 Aligned_cols=238 Identities=16% Similarity=0.205 Sum_probs=185.5
Q ss_pred HhcCCCEEEEEecCCcccccccccccccchHHHHHHHH-hhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCC
Q 009759 225 KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL-HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 303 (526)
Q Consensus 225 ~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~ 303 (526)
...|+|+++++|+.. +....++... .+.+|.++++|+..++.+.+.+....+++.+||||+|.+.|
T Consensus 66 ~~~~~~~v~e~~~~~-------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f 132 (331)
T PHA01630 66 PHVGKNIVFEVADTD-------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMF 132 (331)
T ss_pred cccCCceEEEEEeec-------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHc
Confidence 446889999999821 1122445666 78899999999999999987754224689999999999888
Q ss_pred CCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCccHHHHHHHhcCCCeEEecc
Q 009759 304 HPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMPAVFTGM 379 (526)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~ 379 (526)
.+.... ..+..+++++|++.+.||++.+++|++.+ ++++++++|++.....+.. . ..+.|.
T Consensus 133 ~~~~~~----------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~~----~-~~~~~~ 197 (331)
T PHA01630 133 EYKPKE----------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLFG----L-NGVKTP 197 (331)
T ss_pred CCCccc----------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhcc----c-cceecc
Confidence 654211 23445677888899999999999999887 5789999997654332211 1 113566
Q ss_pred cChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCC---------------
Q 009759 380 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP--------------- 444 (526)
Q Consensus 380 v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~--------------- 444 (526)
++.+++..+|+.||++++||+.|+||++++||||||+|||+++.||..|++ .++.+|++++.
T Consensus 198 v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i---~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 198 LPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWV---LSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhc---cCCCceEEeeecccccccccCCcccc
Confidence 899999999999999999999999999999999999999999999999999 78777766642
Q ss_pred ----CCHHHHHHHHHHhhhC---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 009759 445 ----GDLDDCLSKLEPLLYN---QELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 445 ----~d~~~la~ai~~ll~d---~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~ 494 (526)
.|.+++++++.+++.| ++.++.+..+++...++|||++++++++ ++|++
T Consensus 275 ~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~-~l~~~ 330 (331)
T PHA01630 275 YFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWE-KILEK 330 (331)
T ss_pred cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHhc
Confidence 2778899999998887 3445555555555568999999999997 77764
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.97 E-value=3.8e-30 Score=259.02 Aligned_cols=266 Identities=23% Similarity=0.326 Sum_probs=211.6
Q ss_pred cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHH
Q 009759 203 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEA 282 (526)
Q Consensus 203 ~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~ 282 (526)
.++|+++++....... .+.......+.++++|+................ ........+..+|.+++.|+..++.+.+
T Consensus 98 ~~~diii~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~ii~~s~~~~~~l~~ 174 (372)
T cd04949 98 TKPDVFILDRPTLDGQ--ALLNMKKAAKVVVVLHSNHVSDNNDPVHSLINN-FYEYVFENLDKVDGVIVATEQQKQDLQK 174 (372)
T ss_pred CCCCEEEECCccccch--hHHhccCCceEEEEEChHHhCCcccccccccch-hhHHHHhChhhCCEEEEccHHHHHHHHH
Confidence 6899999998655443 223344556788889974322211111111111 1122223467899999999999999988
Q ss_pred hcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeC
Q 009759 283 ARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGD 358 (526)
Q Consensus 283 ~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~ 358 (526)
.++. ..++.++|||++...+.+... ...++..++++|++.+.||++.+++++..+ ++++|+|+|.
T Consensus 175 ~~~~-~~~v~~ip~g~~~~~~~~~~~----------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~ 243 (372)
T cd04949 175 QFGN-YNPIYTIPVGSIDPLKLPAQF----------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGY 243 (372)
T ss_pred HhCC-CCceEEEcccccChhhcccch----------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 7763 345899999999887654310 134567899999999999999999999876 7899999999
Q ss_pred CccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC-CCCceeccc
Q 009759 359 GPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPED 433 (526)
Q Consensus 359 g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g-g~~e~v~~~ 433 (526)
|+....+..++... +|.+.|+. +++.++|+.||++|+||..||+|++++|||++|+|||+++.+ |..+++
T Consensus 244 g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v--- 318 (372)
T cd04949 244 GDEEEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEII--- 318 (372)
T ss_pred CchHHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHc---
Confidence 88777776666543 58999965 789999999999999999999999999999999999999987 789999
Q ss_pred CCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 009759 434 QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 487 (526)
Q Consensus 434 ~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~ 487 (526)
.++.+|++++++|+++++++|.++++|++.++++++++++.+++|+|+.+++++
T Consensus 319 ~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 319 EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 889999999999999999999999999999999999999998899999998763
No 66
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=2.5e-29 Score=251.36 Aligned_cols=328 Identities=22% Similarity=0.189 Sum_probs=234.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc---cCceeccccccCCCcccc------ccch
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF---YGAKLIGSRSFPCPWYQK------VPLS 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~ 189 (526)
|||++++. ..||+..++.+++++|.++||+|++++......... .+..+..+.......... ....
T Consensus 2 ~~i~i~~~-----g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGG-----GTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcC-----cchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHH
Confidence 89988864 237888889999999999999999998755321111 122222222111110000 1112
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEE
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 269 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 269 (526)
+....++.+++++++||+||+|.+... +.+.++++..++|++++.|+..+. ...+.+++.+|.+
T Consensus 77 ~~~~~~~~~~ik~~~pDvv~~~~~~~~-~~~~~~~~~~~~p~v~~~~~~~~~---------------~~~r~~~~~~d~i 140 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVVVGFGGYVS-GPGGLAARLLGIPLVIHEQNAVPG---------------LANKLLARFAKKV 140 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcch-hHHHHHHHHcCCCEEEEcCCCCcc---------------HHHHHHHHHhchh
Confidence 444557778888999999999985443 334556777899999876653221 2356677889999
Q ss_pred EeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHH-HHHHhC
Q 009759 270 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLK-RVMDRL 348 (526)
Q Consensus 270 i~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li-~a~~~l 348 (526)
++.++... .+ .+..++.+++||++.+.+.+... +.++.. ..+.++++++|+....+++..++ +|++++
T Consensus 141 i~~~~~~~---~~---~~~~~i~vi~n~v~~~~~~~~~~----~~~~~~-~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~ 209 (357)
T PRK00726 141 ATAFPGAF---PE---FFKPKAVVTGNPVREEILALAAP----PARLAG-REGKPTLLVVGGSQGARVLNEAVPEALALL 209 (357)
T ss_pred eECchhhh---hc---cCCCCEEEECCCCChHhhcccch----hhhccC-CCCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 99887442 12 36689999999999876654221 112222 34667888999888888765544 888877
Q ss_pred CC--cEEEEEeCCccHHHHHHHhc-CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 349 PE--ARIAFIGDGPYREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 349 ~~--~~l~ivG~g~~~~~l~~l~~-~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
.+ ..++++|+|+..+..+. .+ +.+|++.|++ +++.++|+.||++|+.+ .+++++|||++|+|+|++..++
T Consensus 210 ~~~~~~~~~~G~g~~~~~~~~-~~~~~~v~~~g~~--~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~Pvv~~~~~~ 282 (357)
T PRK00726 210 PEALQVIHQTGKGDLEEVRAA-YAAGINAEVVPFI--DDMAAAYAAADLVICRA----GASTVAELAAAGLPAILVPLPH 282 (357)
T ss_pred hhCcEEEEEcCCCcHHHHHHH-hhcCCcEEEeehH--hhHHHHHHhCCEEEECC----CHHHHHHHHHhCCCEEEecCCC
Confidence 54 45677898875444333 33 2248999998 79999999999999865 2689999999999999997653
Q ss_pred C--------CceecccCCCceeEeeCCCC--HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 426 I--------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 426 ~--------~e~v~~~~~~~~g~~~~~~d--~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
. .+.+ .+.++|++++.+| +++++++|.++++|++.+++|++++++..+.++.+.+++.+.
T Consensus 283 ~~~~~~~~~~~~i---~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (357)
T PRK00726 283 AADDHQTANARAL---VDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIE 352 (357)
T ss_pred CCcCcHHHHHHHH---HHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 2 2445 5677899998877 999999999999999999999999999988999999998886
No 67
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=1.7e-28 Score=236.14 Aligned_cols=305 Identities=17% Similarity=0.193 Sum_probs=213.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
||-++++-. ......+...++..|++.|.-|++++.....+.. .+
T Consensus 1 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------------- 45 (335)
T PHA01633 1 MKTAILTMN-----YSSISNVSEDIAEVLRENGEIVTITKNPFYIPKA---EK--------------------------- 45 (335)
T ss_pred CceEEEEec-----hhhhhhHHHHHHHHHHhCCcEEEEecCCcccCcc---ce---------------------------
Confidence 566666543 2567788899999999999988888754321111 00
Q ss_pred HHHhcCCCEEEEC-CCch-HHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhH
Q 009759 199 EVARFKPDIIHAS-SPGI-MVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI 276 (526)
Q Consensus 199 ~l~~~~pDiV~~~-~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~ 276 (526)
=||++. .+.. ..+....-....+.+++.++|+.... ..+.+. +.+.+.++++|+..
T Consensus 46 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tt~~g~~~~--------------~~y~~~-m~~~~~vIavS~~t 103 (335)
T PHA01633 46 -------LIVFIPFHPPSLNPYLYAYYQFKGKKYFYTTCDGIPNI--------------EIVNKY-LLQDVKFIPNSKFS 103 (335)
T ss_pred -------EEEEeecCCcccchHHhhhhhhcCCCceEEeeCCcCch--------------HHHHHH-HhcCCEEEeCCHHH
Confidence 012221 1111 11111111223357788888876531 122333 44466899999999
Q ss_pred HHHHHHhcccCCCcEEEeecCCCCCCCCCCcc-cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----C--
Q 009759 277 GKDLEAARVTAANKIRIWKKGVDSESFHPRFR-SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P-- 349 (526)
Q Consensus 277 ~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~-- 349 (526)
++.+.+.+. +.. + +|++|+|.+.|.+... ....+.++....++.++++++||+.++||++.+++|++.+ +
T Consensus 104 ~~~L~~~G~-~~~-i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~ 180 (335)
T PHA01633 104 AENLQEVGL-QVD-L-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDI 180 (335)
T ss_pred HHHHHHhCC-CCc-e-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCc
Confidence 999998754 322 3 4789999998876532 2445555544335678899999999999999999999876 3
Q ss_pred --CcEEEEEeCCccHHHHHHHhcCCCeEEe---cccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 350 --EARIAFIGDGPYREELEKMFTGMPAVFT---GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 350 --~~~l~ivG~g~~~~~l~~l~~~~~V~~~---g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
+++++++|.+ .++++.-..+|++. |+++.+++.++|++||++|+||..||||++++||||||+|||+++.|
T Consensus 181 ~~~i~l~ivG~~----~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~ 256 (335)
T PHA01633 181 AKKIHFFVISHK----QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMP 256 (335)
T ss_pred cccEEEEEEcHH----HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCC
Confidence 3577777742 33333333479998 56677899999999999999999999999999999999999999999
Q ss_pred CCCceecc---------------cCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 425 GIPDIIPE---------------DQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 425 g~~e~v~~---------------~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
++.|++.. +.+...|+.++..|+++++++|.+++...+ ....+.++++.+++|+|+++.++++
T Consensus 257 ~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 257 PLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQD-REERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred CceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccC-hhhhhHHHHHHHHhcCHHHHHHHhh
Confidence 98887521 012235778888999999999999965432 2333667888889999999999885
No 68
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.97 E-value=3.1e-28 Score=243.00 Aligned_cols=317 Identities=20% Similarity=0.200 Sum_probs=226.7
Q ss_pred ccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc---cCceeccccccCCCcccc---c---cchhcccHHHHHHHHh
Q 009759 132 YVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF---YGAKLIGSRSFPCPWYQK---V---PLSLALSPRIISEVAR 202 (526)
Q Consensus 132 ~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~l~~ 202 (526)
..||+..++..++++|.++||+|++++......... .+.++..+.......... . .........+.+++++
T Consensus 8 ~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (350)
T cd03785 8 GTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARKILKK 87 (350)
T ss_pred CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447888999999999999999999998765422211 112222221111100000 0 0012334467788889
Q ss_pred cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHH
Q 009759 203 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEA 282 (526)
Q Consensus 203 ~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~ 282 (526)
++||+||++.+.. .+.+.++++..++|++++.|+.++. ...+.+++.+|.++++|+...+.
T Consensus 88 ~~pDvI~~~~~~~-~~~~~~~a~~~~~p~v~~~~~~~~~---------------~~~~~~~~~~~~vi~~s~~~~~~--- 148 (350)
T cd03785 88 FKPDVVVGFGGYV-SGPVGLAAKLLGIPLVIHEQNAVPG---------------LANRLLARFADRVALSFPETAKY--- 148 (350)
T ss_pred cCCCEEEECCCCc-chHHHHHHHHhCCCEEEEcCCCCcc---------------HHHHHHHHhhCEEEEcchhhhhc---
Confidence 9999999987643 3444566788899999766553321 23456677799999999988776
Q ss_pred hcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHH-HHHHHHHhCC--CcEE-EEEeC
Q 009759 283 ARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD-FLKRVMDRLP--EARI-AFIGD 358 (526)
Q Consensus 283 ~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~-~li~a~~~l~--~~~l-~ivG~ 358 (526)
.+..++.+++||+|.+.+.+... +.+++. .++.++++++|+....|+.+ .+++++..++ ++++ +++|.
T Consensus 149 ---~~~~~~~~i~n~v~~~~~~~~~~----~~~~~~-~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~ 220 (350)
T cd03785 149 ---FPKDKAVVTGNPVREEILALDRE----RARLGL-RPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGK 220 (350)
T ss_pred ---CCCCcEEEECCCCchHHhhhhhh----HHhcCC-CCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCC
Confidence 24579999999999876654311 333433 45667788888776777765 4568887774 5654 46788
Q ss_pred CccHHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC--------Cc
Q 009759 359 GPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI--------PD 428 (526)
Q Consensus 359 g~~~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~--------~e 428 (526)
| ..+++++.+++ .+|++.|++ +++.++|+.||++|.++. +++++|||++|+|||+++.++. .+
T Consensus 221 g-~~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~ 293 (350)
T cd03785 221 G-DLEEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDHQTANAR 293 (350)
T ss_pred c-cHHHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHH
Confidence 7 55677776654 489999998 799999999999997652 6899999999999999876541 34
Q ss_pred eecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 009759 429 IIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 485 (526)
Q Consensus 429 ~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~ 485 (526)
.+ .+..+|++++.+ |+++++++|.++++|++.+++|++++++.++.+..+++++
T Consensus 294 ~l---~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 294 AL---VKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HH---HhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 55 566789999876 8999999999999999999999999998888777777654
No 69
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=6.1e-28 Score=242.02 Aligned_cols=334 Identities=16% Similarity=0.125 Sum_probs=221.5
Q ss_pred CccCchHHHHHHHHHHHHHCCCeEEEEEeCCC-CCccccCceeccccccC----CC------ccccc--cchhcccHHHH
Q 009759 131 SYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG-VPQEFYGAKLIGSRSFP----CP------WYQKV--PLSLALSPRII 197 (526)
Q Consensus 131 ~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~-~~~~~~~~~~~~~~~~~----~~------~~~~~--~~~~~~~~~l~ 197 (526)
...++...+-+.++..|+++||.|.++....- ............+.... .. ..... ...........
T Consensus 13 ~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
T cd04950 13 DDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPRGRDWVRVVLRLRAALRRPRRLDPLIPARRRRLLRLLLNALL 92 (373)
T ss_pred cCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCCCcccEEeeecccccccCccccCccccchhhhHHHHHHHHHH
Confidence 34467778889999999999999999976432 11111111111110000 00 00000 00001111111
Q ss_pred HHH---HhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 198 SEV---ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 198 ~~l---~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
... .+.+..|++.+.+....+ .....+.++|++++|.++..... .......++.+++.+|.++++|+
T Consensus 93 ~~~~~~~~~~~~i~~~~~P~~~~~----~~~~~~~~~Vyd~~D~~~~~~~~------~~~~~~~e~~~~~~ad~vi~~S~ 162 (373)
T cd04950 93 FWAQLELGFGRPILWYYTPYTLPV----AALLQASLVVYDCVDDLSAFPGG------PPELLEAERRLLKRADLVFTTSP 162 (373)
T ss_pred HHHHHhcCCCCcEEEEeCccHHHH----HhhcCCCeEEEEcccchhccCCC------CHHHHHHHHHHHHhCCEEEECCH
Confidence 111 134556666666544332 23367889999999977554321 11122678899999999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEE
Q 009759 275 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIA 354 (526)
Q Consensus 275 ~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ 354 (526)
.+.+.+...+ .++.+++||+|.+.|.+........... ...++++++|+|++.+.++++.+.++++..++++|+
T Consensus 163 ~l~~~~~~~~----~~i~~i~ngvd~~~f~~~~~~~~~~~~~--~~~~~~~i~y~G~l~~~~d~~ll~~la~~~p~~~~v 236 (373)
T cd04950 163 SLYEAKRRLN----PNVVLVPNGVDYEHFAAARDPPPPPADL--AALPRPVIGYYGAIAEWLDLELLEALAKARPDWSFV 236 (373)
T ss_pred HHHHHHhhCC----CCEEEcccccCHHHhhcccccCCChhHH--hcCCCCEEEEEeccccccCHHHHHHHHHHCCCCEEE
Confidence 9998887754 5899999999998886543221100011 234678999999999988999998888888999999
Q ss_pred EEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCC-----CCCcHHHHHHHHcCCcEEEeCCCCCCce
Q 009759 355 FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-----ETLGLVVLEAMSSGIPVVGVRAGGIPDI 429 (526)
Q Consensus 355 ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~-----e~~~~~ilEAma~G~PvI~~~~gg~~e~ 429 (526)
++|.++.......+....||+++|+++++++..+|+.+|++++|+.. +++|+|++||||||+|||+++.+++.+.
T Consensus 237 liG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~ 316 (373)
T cd04950 237 LIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRY 316 (373)
T ss_pred EECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhh
Confidence 99987333333333334589999999999999999999999999863 4689999999999999999986654332
Q ss_pred ecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009759 430 IPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRN 489 (526)
Q Consensus 430 v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~ 489 (526)
...++ +..+|+++++++|.+++.++...... ++++.+++|||++.++++++
T Consensus 317 ------~~~~~-~~~~d~~~~~~ai~~~l~~~~~~~~~--~~~~~~~~~sW~~~a~~~~~ 367 (373)
T cd04950 317 ------EDEVV-LIADDPEEFVAAIEKALLEDGPARER--RRLRLAAQNSWDARAAEMLE 367 (373)
T ss_pred ------cCcEE-EeCCCHHHHHHHHHHHHhcCCchHHH--HHHHHHHHCCHHHHHHHHHH
Confidence 33344 44569999999999976543221111 22235579999999999973
No 70
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=4.1e-28 Score=244.51 Aligned_cols=342 Identities=15% Similarity=0.132 Sum_probs=235.2
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc-cCc-------------eeccccc-cCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF-YGA-------------KLIGSRS-FPC 180 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~-~~~-------------~~~~~~~-~~~ 180 (526)
.+.|||++++..+ .+|+...+..++++|.++||+|.++.+......+. ... ..++... ...
T Consensus 2 ~~~~rili~t~~~----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 77 (380)
T PRK13609 2 IKNPKVLILTAHY----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVE 77 (380)
T ss_pred CCCCeEEEEEcCC----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 4668999998753 46899999999999999999977776544221110 000 0000000 000
Q ss_pred Ccccccc---chhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHH
Q 009759 181 PWYQKVP---LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWL 257 (526)
Q Consensus 181 ~~~~~~~---~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~ 257 (526)
....... ........+.+++++++||+||++.+... ...+..+...++|++..+++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~-~~~~~~~~~~~ip~~~~~td~~~~---------------- 140 (380)
T PRK13609 78 KIYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIA-VPELKKQTGISIPTYNVLTDFCLH---------------- 140 (380)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHH-HHHHHHhcCCCCCeEEEeCCCCCC----------------
Confidence 0000000 11112367888999999999999876433 333333445678987655553210
Q ss_pred HHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccccccc
Q 009759 258 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 337 (526)
Q Consensus 258 ~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg 337 (526)
.+++++.+|.+++.|+..++.+.+.+ .+.+++.+++++++... .+.......+.++++..+...++++.|++...|+
T Consensus 141 -~~~~~~~ad~i~~~s~~~~~~l~~~g-i~~~ki~v~G~p~~~~f-~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~ 217 (380)
T PRK13609 141 -KIWVHREVDRYFVATDHVKKVLVDIG-VPPEQVVETGIPIRSSF-ELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGN 217 (380)
T ss_pred -cccccCCCCEEEECCHHHHHHHHHcC-CChhHEEEECcccChHH-cCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcC
Confidence 12356789999999999999998865 46678888877665433 2222334456666653334445667788888899
Q ss_pred HHHHHHHHHhCCCcEEEEEe-CC-ccHHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHH
Q 009759 338 LDFLKRVMDRLPEARIAFIG-DG-PYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 413 (526)
Q Consensus 338 ~~~li~a~~~l~~~~l~ivG-~g-~~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma 413 (526)
++.+++++...++++++++| .+ ...+.++++.++. +|+++|++ +++.++|+.||++|. ++.|++++|||+
T Consensus 218 ~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~--~~~~~l~~~aD~~v~----~~gg~t~~EA~a 291 (380)
T PRK13609 218 VKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYV--ENIDELFRVTSCMIT----KPGGITLSEAAA 291 (380)
T ss_pred HHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEech--hhHHHHHHhccEEEe----CCCchHHHHHHH
Confidence 99999999877889988774 33 3566777766543 69999999 578999999999884 455899999999
Q ss_pred cCCcEEEeC-CCCCC----ceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 414 SGIPVVGVR-AGGIP----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 414 ~G~PvI~~~-~gg~~----e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
+|+|+|+++ .+|.. +++ .+ .|+.+...|+++++++|.++++|++.+++|++++++..+.++++.+++.++
T Consensus 292 ~g~PvI~~~~~~g~~~~n~~~~---~~--~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~ 366 (380)
T PRK13609 292 LGVPVILYKPVPGQEKENAMYF---ER--KGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDIL 366 (380)
T ss_pred hCCCEEECCCCCCcchHHHHHH---Hh--CCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999976 55432 233 22 344444569999999999999999999999999988777889999999987
Q ss_pred HHHHH
Q 009759 489 NEQYN 493 (526)
Q Consensus 489 ~~ly~ 493 (526)
+++.
T Consensus 367 -~~~~ 370 (380)
T PRK13609 367 -AENH 370 (380)
T ss_pred -Hhhh
Confidence 4443
No 71
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.96 E-value=2.8e-27 Score=235.91 Aligned_cols=324 Identities=19% Similarity=0.190 Sum_probs=218.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc---cCceeccccccCCCcc---ccc---cch
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF---YGAKLIGSRSFPCPWY---QKV---PLS 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~---~~~ 189 (526)
|||+|++. ..||+......++++|.++||+|++++......... .+..+..+........ ..+ ...
T Consensus 1 ~~i~~~~g-----~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~ 75 (348)
T TIGR01133 1 KKVVLAAG-----GTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKL 75 (348)
T ss_pred CeEEEEeC-----ccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHH
Confidence 68987764 225665666799999999999999998644322111 1222222211110000 000 111
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEE
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 269 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 269 (526)
+.....+.+++++++||+||++..... +.+.++++..++|++++.++..+ ....+++++.+|.+
T Consensus 76 ~~~~~~l~~~i~~~~pDvVi~~~~~~~-~~~~~~~~~~~~p~v~~~~~~~~---------------~~~~~~~~~~~d~i 139 (348)
T TIGR01133 76 LKAVFQARRILKKFKPDAVIGFGGYVS-GPAGLAAKLLGIPLFHHEQNAVP---------------GLTNKLLSRFAKKV 139 (348)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccc-HHHHHHHHHcCCCEEEECCCCCc---------------cHHHHHHHHHhCee
Confidence 334457778899999999999975432 33445577788999854332211 12356678889999
Q ss_pred EeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHH-HHHHHHhC
Q 009759 270 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF-LKRVMDRL 348 (526)
Q Consensus 270 i~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~-li~a~~~l 348 (526)
+++|+.+++.+ +..+++||++...+.+... +.+++. .++.++++++|+....|++.. ++++++.+
T Consensus 140 i~~~~~~~~~~---------~~~~i~n~v~~~~~~~~~~----~~~~~~-~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l 205 (348)
T TIGR01133 140 LISFPGAKDHF---------EAVLVGNPVRQEIRSLPVP----RERFGL-REGKPTILVLGGSQGAKILNELVPKALAKL 205 (348)
T ss_pred EECchhHhhcC---------CceEEcCCcCHHHhcccch----hhhcCC-CCCCeEEEEECCchhHHHHHHHHHHHHHHH
Confidence 99999887654 2378999998765543211 122333 356778999998877888654 55788776
Q ss_pred C--CcEEEEEeCCccHHHHHHHhcCCCe-EEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 349 P--EARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 349 ~--~~~l~ivG~g~~~~~l~~l~~~~~V-~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
. ++++++++.+...+.+++..++.++ ....+.. .++.++|+.||++|.++ | +++++|||++|+|+|+++.++
T Consensus 206 ~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~-~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 206 AEKGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFID-ENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred hhcCcEEEEECCcchHHHHHHHHhhCCceEEecCcc-cCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCC
Confidence 3 4666444433344677776665542 3334443 38999999999999864 2 789999999999999998754
Q ss_pred C-------CceecccCCCceeEeeCCCC--HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 009759 426 I-------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 485 (526)
Q Consensus 426 ~-------~e~v~~~~~~~~g~~~~~~d--~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~ 485 (526)
. .+++ .++.+|++++.+| +++++++|.++++|++.+++|+++++++++.+..+.+++
T Consensus 281 ~~~~~~~~~~~i---~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 281 AADDQYYNAKFL---EDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred CccchhhHHHHH---HHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 2 2466 6788999998766 999999999999999999999999988877666666654
No 72
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.95 E-value=1.5e-26 Score=232.68 Aligned_cols=265 Identities=14% Similarity=0.191 Sum_probs=201.0
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHH-----hcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcE
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAK-----LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 268 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~-----~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 268 (526)
.++.+++++++||+||++++......+..+.+ ..++|++..++|..... ..++.+.+|.
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~----------------~~w~~~~~d~ 153 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCH----------------PTWFHKGVTR 153 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcC----------------cccccCCCCE
Confidence 56778899999999999765432222222222 34789888877753110 1234578999
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 348 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l 348 (526)
++++|+..++.+.+.+ .+.+++.+++++++.+.+.+.......+.++++ .++.++|+++|+....|++..+++++..+
T Consensus 154 ~~~~s~~~~~~l~~~g-~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl-~~~~~~il~~Gg~~g~~~~~~li~~l~~~ 231 (382)
T PLN02605 154 CFCPSEEVAKRALKRG-LEPSQIRVYGLPIRPSFARAVRPKDELRRELGM-DEDLPAVLLMGGGEGMGPLEETARALGDS 231 (382)
T ss_pred EEECCHHHHHHHHHcC-CCHHHEEEECcccCHhhccCCCCHHHHHHHcCC-CCCCcEEEEECCCcccccHHHHHHHHHHh
Confidence 9999999999998876 477899999999987765544455667777766 46778999999998899999998888652
Q ss_pred --------CCcE-EEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcE
Q 009759 349 --------PEAR-IAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 418 (526)
Q Consensus 349 --------~~~~-l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~Pv 418 (526)
++.+ ++++|.+. ..+.+++.....+|+++|++ +++.++|++||++|.++ .|++++|||+||+|+
T Consensus 232 ~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~Pv 305 (382)
T PLN02605 232 LYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFV--TNMEEWMGACDCIITKA----GPGTIAEALIRGLPI 305 (382)
T ss_pred hccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEecc--ccHHHHHHhCCEEEECC----CcchHHHHHHcCCCE
Confidence 4565 56778764 34556555334479999999 58999999999999754 478999999999999
Q ss_pred EEeCC------CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 419 VGVRA------GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 419 I~~~~------gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d-~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
|+++. |+. +.+ .+++.|+.+ .|+++++++|.+++.| ++.+++|++++++..+..+.+.+++.+.
T Consensus 306 I~~~~~pgqe~gn~-~~i---~~~g~g~~~--~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~ 376 (382)
T PLN02605 306 ILNGYIPGQEEGNV-PYV---VDNGFGAFS--ESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLH 376 (382)
T ss_pred EEecCCCccchhhH-HHH---HhCCceeec--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 99984 333 334 345567655 5999999999999998 9999999999999888888888887775
No 73
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=2.7e-27 Score=241.85 Aligned_cols=276 Identities=18% Similarity=0.188 Sum_probs=205.4
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
..|+|++|+++...++.++..+..+.|+++.+|..+|...--.... ....+.+.+ -.+|.+.+.+....+.+.+.
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp----~~~~ll~~~-l~~D~igF~t~~~~~~Fl~~ 205 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLP----WREELLRGL-LGADLIGFQTERYARNFLSC 205 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCC----ChHHHHHHH-hcCCEEEECCHHHHHHHHHH
Confidence 5699999999888887777666678899999999887542211111 111233333 34999999987766555442
Q ss_pred c----c------------cCCCcEEEeecCCCCCCCCCCcccHHHH----HhhcCCCCCCcEEEEEecccccccHHHHHH
Q 009759 284 R----V------------TAANKIRIWKKGVDSESFHPRFRSSEMR----WRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 343 (526)
Q Consensus 284 ~----~------------~~~~ki~vi~ngid~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~ 343 (526)
. + ....++.++|||||.+.|.+.......+ .... ...++++|+++||+++.||++.+++
T Consensus 206 ~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~il~vgRl~~~Kgi~~ll~ 284 (460)
T cd03788 206 CSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRE-RLGGRKLIVGVDRLDYSKGIPERLL 284 (460)
T ss_pred HHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHH-hcCCCEEEEEecCccccCCHHHHHH
Confidence 1 0 1224688999999998886543322221 1122 2457789999999999999999999
Q ss_pred HHHhC----CC----cEEEEEeCC-----ccH----HHHHHHhcC----------CCeE-EecccChhhHHHHHHcCcEE
Q 009759 344 VMDRL----PE----ARIAFIGDG-----PYR----EELEKMFTG----------MPAV-FTGMLLGEELSQAYASGDVF 395 (526)
Q Consensus 344 a~~~l----~~----~~l~ivG~g-----~~~----~~l~~l~~~----------~~V~-~~g~v~~~~l~~~~~~aDv~ 395 (526)
|++.+ |+ ++|+++|.+ +.. +++++++.+ .+|+ +.|.++.+++..+|+.||++
T Consensus 285 A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~ 364 (460)
T cd03788 285 AFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVA 364 (460)
T ss_pred HHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEE
Confidence 99765 44 578888642 222 333333221 1344 45788999999999999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCc----EEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC-HHHHHHHHHH
Q 009759 396 VMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQA 470 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~P----vI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d-~~~~~~~~~~ 470 (526)
|+||..||+|++++||||||+| ||+++.+|..+.. .+|+++++.|+++++++|.+++++ ++.++.++++
T Consensus 365 v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~~------~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~ 438 (460)
T cd03788 365 LVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEEL------SGALLVNPYDIDEVADAIHRALTMPLEERRERHRK 438 (460)
T ss_pred EeCccccccCcccceeEEEecCCCceEEEeccccchhhc------CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999 9999888876653 568999999999999999999985 5788888899
Q ss_pred HHHHHHhCCHHHHHHHHHHHH
Q 009759 471 ARQEMEKYDWRAATRTIRNEQ 491 (526)
Q Consensus 471 a~~~~~~fs~~~~~~~~~~~l 491 (526)
+++.+++|+++..++++++++
T Consensus 439 ~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 439 LREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHhCCHHHHHHHHHHhh
Confidence 999999999999999998654
No 74
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.95 E-value=3.6e-26 Score=228.85 Aligned_cols=289 Identities=16% Similarity=0.192 Sum_probs=194.7
Q ss_pred cCCCEEEECCCchHHHHHHHHH-HhcCCCEEEEEecCCcccc--ccc--ccc-------------cccchHHHHHHHHhh
Q 009759 203 FKPDIIHASSPGIMVFGALIIA-KLLCVPIVMSYHTHVPVYI--PRY--TFS-------------WLVKPMWLVIKFLHR 264 (526)
Q Consensus 203 ~~pDiV~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~--~~~--~~~-------------~~~~~~~~~~~~~~~ 264 (526)
.++||+|+|.|... .+++.++ +..++|+|+|.|....... ... ... ........+|+.+..
T Consensus 147 ~~~dViH~HeWm~g-~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 147 EPAVVAHFHEWQAG-VGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCCeEEEEcchhHh-HHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHh
Confidence 47999999998544 4444444 5678999999997543221 110 000 000122347889999
Q ss_pred cCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH----------------HHHHhhcCCCCCCcEEEE
Q 009759 265 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS----------------EMRWRLSNGEPDKPLIVH 328 (526)
Q Consensus 265 ~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~----------------~~~~~~~~~~~~~~~i~~ 328 (526)
.||.++++|+.+++++...++.+.++ |+|||+|.+.|.+....+ .++.+++. ..++.+++|
T Consensus 226 ~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~-~~d~tli~f 302 (590)
T cd03793 226 CAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDF-DLDKTLYFF 302 (590)
T ss_pred hCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCC-CCCCeEEEE
Confidence 99999999999999999998877666 999999999987654211 11222222 346666666
Q ss_pred -Eecccc-cccHHHHHHHHHhCC--------C---cEEEEEeCC------------ccHHHH----HH------------
Q 009759 329 -VGRLGV-EKSLDFLKRVMDRLP--------E---ARIAFIGDG------------PYREEL----EK------------ 367 (526)
Q Consensus 329 -vG~l~~-~Kg~~~li~a~~~l~--------~---~~l~ivG~g------------~~~~~l----~~------------ 367 (526)
+||+.. +||+|.+++|+.++. + +-|+++-.+ ...+++ ..
T Consensus 303 ~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~ 382 (590)
T cd03793 303 TAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEA 382 (590)
T ss_pred EeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 799988 999999999998871 2 223333211 000000 00
Q ss_pred ---------------------------------------------------------HhcC--C--CeEEec-ccC----
Q 009759 368 ---------------------------------------------------------MFTG--M--PAVFTG-MLL---- 381 (526)
Q Consensus 368 ---------------------------------------------------------l~~~--~--~V~~~g-~v~---- 381 (526)
+.+. . .|.|++ +++
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~ 462 (590)
T cd03793 383 ALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNP 462 (590)
T ss_pred hhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCC
Confidence 0000 0 134433 222
Q ss_pred --hhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceeccc-CCC-ceeEeeC-------CCCHHHH
Q 009759 382 --GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-QDG-KIGYLFN-------PGDLDDC 450 (526)
Q Consensus 382 --~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~-~~~-~~g~~~~-------~~d~~~l 450 (526)
..+..++|+.||++|+||.+||||++++||||||+|||+|+.+|+.+.+.+. .++ ..|+.+. +.+.+++
T Consensus 463 ~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 463 LLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred cCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 1357789999999999999999999999999999999999999985544221 233 3566665 3467888
Q ss_pred HHHHHHhhhCHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 451 LSKLEPLLYNQELRETMGQAAR--QEMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 451 a~ai~~ll~d~~~~~~~~~~a~--~~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
+++|.++++. ..++++..+++ +..+.|+|++.++.|. +-|+.++.
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~-~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYR-KARQLALS 589 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhh
Confidence 9999998854 55666666554 5557899999999997 77777664
No 75
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=8.2e-26 Score=227.50 Aligned_cols=343 Identities=13% Similarity=0.185 Sum_probs=229.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC---eEEEEEeCCCCCccccCc-------------eeccccccCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD---EVMVVTTHEGVPQEFYGA-------------KLIGSRSFPC 180 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~---~V~vi~~~~~~~~~~~~~-------------~~~~~~~~~~ 180 (526)
+.|||||++.. .++|+......+.++|.++|. +|.++-.-.......... ..++. .+..
T Consensus 4 ~~~~vlil~~~----~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~-~y~~ 78 (391)
T PRK13608 4 QNKKILIITGS----FGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKG-FYYS 78 (391)
T ss_pred CCceEEEEECC----CCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHH-HHHc
Confidence 45899999864 347888889999999998864 465543211100000000 00000 0000
Q ss_pred C--ccccccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHH
Q 009759 181 P--WYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLV 258 (526)
Q Consensus 181 ~--~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 258 (526)
. ..............+.+++++++||+|+++.+... ...+..++..++|++...+|... .
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~-~~~l~~~~~~~iP~~~v~td~~~---~-------------- 140 (391)
T PRK13608 79 RPDKLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPV-MSVLTEQFNINIPVATVMTDYRL---H-------------- 140 (391)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHH-HHHHHHhcCCCCCEEEEeCCCCc---c--------------
Confidence 0 00000111122357888999999999999876432 22222334458898765444310 0
Q ss_pred HHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccH
Q 009759 259 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL 338 (526)
Q Consensus 259 ~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~ 338 (526)
..++.+.+|.+++.|+.+++.+.+.+ .+.+++.+++++++..... .......+.++++..++..++++.|+++..|++
T Consensus 141 ~~w~~~~~d~~~v~s~~~~~~l~~~g-i~~~ki~v~GiPv~~~f~~-~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~ 218 (391)
T PRK13608 141 KNWITPYSTRYYVATKETKQDFIDVG-IDPSTVKVTGIPIDNKFET-PIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGF 218 (391)
T ss_pred cccccCCCCEEEECCHHHHHHHHHcC-CCHHHEEEECeecChHhcc-cccHHHHHHHcCCCCCCCEEEEECCCcccchhH
Confidence 11245789999999999999998865 4678899988888755432 223445555665533344456778999988999
Q ss_pred HHHHHHH-HhCCCcEEEEE-eCCc-cHHHHHHHhc-CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHc
Q 009759 339 DFLKRVM-DRLPEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 414 (526)
Q Consensus 339 ~~li~a~-~~l~~~~l~iv-G~g~-~~~~l~~l~~-~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~ 414 (526)
+.+++++ +..++++++++ |.+. ..+.+++... ..+|.+.|++ +++.++|+.||++|. .+.|+++.|||++
T Consensus 219 ~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~~aDl~I~----k~gg~tl~EA~a~ 292 (391)
T PRK13608 219 DTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYT--KHMNEWMASSQLMIT----KPGGITISEGLAR 292 (391)
T ss_pred HHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEecc--chHHHHHHhhhEEEe----CCchHHHHHHHHh
Confidence 9999985 34478888665 5442 3345554432 2379999998 689999999999996 3468899999999
Q ss_pred CCcEEEeCC-CCC----CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009759 415 GIPVVGVRA-GGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRN 489 (526)
Q Consensus 415 G~PvI~~~~-gg~----~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~ 489 (526)
|+|+|+++. +|. ..++ .+.+.|+.. +|+++++++|.++++|++.+++|++++++..+.++++.+++.++
T Consensus 293 G~PvI~~~~~pgqe~~N~~~~---~~~G~g~~~--~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~- 366 (391)
T PRK13608 293 CIPMIFLNPAPGQELENALYF---EEKGFGKIA--DTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLL- 366 (391)
T ss_pred CCCEEECCCCCCcchhHHHHH---HhCCcEEEe--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH-
Confidence 999999863 331 1223 344556554 49999999999999999999999999999888899999999997
Q ss_pred HHHHHHH
Q 009759 490 EQYNAAI 496 (526)
Q Consensus 490 ~ly~~~l 496 (526)
+++..+.
T Consensus 367 ~l~~~~~ 373 (391)
T PRK13608 367 DLIGHSS 373 (391)
T ss_pred HHhhhhh
Confidence 5665443
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.95 E-value=1.8e-26 Score=233.73 Aligned_cols=273 Identities=21% Similarity=0.217 Sum_probs=209.0
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
.-|+|++|+++.+.++.++..+....++.+..|..+|...--.... .+......+-.+|.|-+.+...++.+.+.
T Consensus 127 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp-----~r~~il~gll~~dligF~t~~~~~~Fl~~ 201 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLP-----WRRELLEGLLAYDLVGFQTYDDARNFLSA 201 (456)
T ss_pred CCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCC-----cHHHHHHHHhcCCEEEECCHHHHHHHHHH
Confidence 3489999999988888887677678899999998877532211111 11223334556999999999888877652
Q ss_pred cc---------------cCCCcEEEeecCCCCCCCCCCcccH-------HHHHhhcCCCCCCcEEEEEecccccccHHHH
Q 009759 284 RV---------------TAANKIRIWKKGVDSESFHPRFRSS-------EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 341 (526)
Q Consensus 284 ~~---------------~~~~ki~vi~ngid~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~l 341 (526)
.. ....++.++|||||.+.|.+..... .++.++ .++++|+++||+++.||++.+
T Consensus 202 ~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~----~~~~vIl~VgRLd~~KGi~~l 277 (456)
T TIGR02400 202 VSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL----KGRKLIIGVDRLDYSKGLPER 277 (456)
T ss_pred HHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc----CCCeEEEEccccccccCHHHH
Confidence 11 1345688999999999886543221 122222 467789999999999999999
Q ss_pred HHHHHhC----CC----cEEEEEe-----CCccHHHHHHHhcCC--------------CeE-EecccChhhHHHHHHcCc
Q 009759 342 KRVMDRL----PE----ARIAFIG-----DGPYREELEKMFTGM--------------PAV-FTGMLLGEELSQAYASGD 393 (526)
Q Consensus 342 i~a~~~l----~~----~~l~ivG-----~g~~~~~l~~l~~~~--------------~V~-~~g~v~~~~l~~~~~~aD 393 (526)
++|++++ |+ +.|+++| +++..+.+++.+++. .+. +.|.++.+++..+|+.||
T Consensus 278 l~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaD 357 (456)
T TIGR02400 278 LLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAAD 357 (456)
T ss_pred HHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCc
Confidence 9999875 44 5577774 334444444333211 233 456788999999999999
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCc----EEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHH
Q 009759 394 VFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMG 468 (526)
Q Consensus 394 v~v~ps~~e~~~~~ilEAma~G~P----vI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~ 468 (526)
++|+||..||+|++++||||||+| +|+|+.+|..+.+ . +|+++++.|+++++++|.++++ +++++++..
T Consensus 358 v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l---~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~ 431 (456)
T TIGR02400 358 VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL---N---GALLVNPYDIDGMADAIARALTMPLEEREERH 431 (456)
T ss_pred EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHh---C---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999 9999999988888 3 6999999999999999999998 677888889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 009759 469 QAARQEMEKYDWRAATRTIRNEQ 491 (526)
Q Consensus 469 ~~a~~~~~~fs~~~~~~~~~~~l 491 (526)
+..++.+.+||+...++++++++
T Consensus 432 ~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 432 RAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHh
Confidence 99999998999999999998654
No 77
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.95 E-value=1.1e-25 Score=230.27 Aligned_cols=334 Identities=16% Similarity=0.166 Sum_probs=223.1
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe--CCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEEC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTT--HEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHAS 211 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~ 211 (526)
.|-...+..+++.|.+.++++.++.. ...............+.....| +.....+.+++++++||++|++
T Consensus 60 ~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P--------~d~~~~~~~~l~~~~Pd~v~~~ 131 (425)
T PRK05749 60 VGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLP--------YDLPGAVRRFLRFWRPKLVIIM 131 (425)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEec--------CCcHHHHHHHHHhhCCCEEEEE
Confidence 45678899999999998766444322 2211111000000001111111 1233578888999999999988
Q ss_pred CCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcE
Q 009759 212 SPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKI 291 (526)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki 291 (526)
..... ...+..++..++|+++..|......... .+....+.+.+++.+|.++++|+..++.+.+.+. +.+ +
T Consensus 132 ~~~~~-~~~l~~~~~~~ip~vl~~~~~~~~s~~~------~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~-~~~-i 202 (425)
T PRK05749 132 ETELW-PNLIAELKRRGIPLVLANARLSERSFKR------YQKFKRFYRLLFKNIDLVLAQSEEDAERFLALGA-KNE-V 202 (425)
T ss_pred ecchh-HHHHHHHHHCCCCEEEEeccCChhhHHH------HHHHHHHHHHHHHhCCEEEECCHHHHHHHHHcCC-CCC-c
Confidence 54332 2233445778999998765432211111 1123456778899999999999999999998764 545 8
Q ss_pred EEeecCCCCCCCCCCc---ccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCccH-H
Q 009759 292 RIWKKGVDSESFHPRF---RSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYR-E 363 (526)
Q Consensus 292 ~vi~ngid~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~~~-~ 363 (526)
.+++|+ +.+.+.+.. .....+..++ .++++++++|+ ..|+.+.+++|++.+ ++++|+|+|+|+.+ +
T Consensus 203 ~vi~n~-~~d~~~~~~~~~~~~~~r~~~~---~~~~vil~~~~--~~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~ 276 (425)
T PRK05749 203 TVTGNL-KFDIEVPPELAARAATLRRQLA---PNRPVWIAAST--HEGEEELVLDAHRALLKQFPNLLLILVPRHPERFK 276 (425)
T ss_pred Eecccc-cccCCCChhhHHHHHHHHHHhc---CCCcEEEEeCC--CchHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHH
Confidence 888884 333222211 1123333332 45677888876 367889999998764 78999999999875 6
Q ss_pred HHHHHhcCCCe---EEeccc------------ChhhHHHHHHcCcEEEe-cCCCCCCcHHHHHHHHcCCcEEEeCC-CCC
Q 009759 364 ELEKMFTGMPA---VFTGML------------LGEELSQAYASGDVFVM-PSESETLGLVVLEAMSSGIPVVGVRA-GGI 426 (526)
Q Consensus 364 ~l~~l~~~~~V---~~~g~v------------~~~~l~~~~~~aDv~v~-ps~~e~~~~~ilEAma~G~PvI~~~~-gg~ 426 (526)
++++++++.++ .+.|.. ..+|+..+|+.||++++ +|..|++|.+++|||+||+|||+++. ++.
T Consensus 277 ~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~ 356 (425)
T PRK05749 277 EVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNF 356 (425)
T ss_pred HHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCH
Confidence 78887765432 222210 12689999999999666 56679999999999999999999864 556
Q ss_pred CceecccCC-CceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 009759 427 PDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 427 ~e~v~~~~~-~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l 496 (526)
.++. +. ..+|+++.++|+++++++|.++++|++.+++|++++++.+++. ....++++ +++.+.+
T Consensus 357 ~e~~---~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~--~~~~~~~~-~~l~~~l 421 (425)
T PRK05749 357 KEIF---ERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN--QGALQRTL-QLLEPYL 421 (425)
T ss_pred HHHH---HHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC--ccHHHHHH-HHHHHhc
Confidence 6665 32 2357777788999999999999999999999999999999654 35556665 5555544
No 78
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.94 E-value=2.9e-24 Score=211.60 Aligned_cols=308 Identities=15% Similarity=0.096 Sum_probs=214.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
||..++....+ ....|+..+-..+.+.+.+.|+++.-+........ ........+..
T Consensus 1 m~~~~~~~~~~-~~~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 57 (333)
T PRK09814 1 MKVHITNLYGM-SGNSAALKAKNDVTKIAKQLGFEELGIYFYNIKRD----------------------SLSERSKRLDG 57 (333)
T ss_pred CcEEEEecccc-cccchHHHHHHHHHHHHHHCCCeEeEEEecccccc----------------------hHHHHHHHHHH
Confidence 45434433223 55567888889999999999998876542111000 00011224455
Q ss_pred HHHhcCC-CEEEECCCchHH--HHH--HHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 199 EVARFKP-DIIHASSPGIMV--FGA--LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 199 ~l~~~~p-DiV~~~~~~~~~--~~~--~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
++...++ |+||++.+.... +.. +...++.++|+|+++||.++...... ...+..++.+++.+|.++++|
T Consensus 58 ~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~------~~~~~~~~~~~~~aD~iI~~S 131 (333)
T PRK09814 58 ILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDSN------YYLMKEEIDMLNLADVLIVHS 131 (333)
T ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcccc------chhhHHHHHHHHhCCEEEECC
Confidence 6666778 999999876543 112 22233447999999999876532211 112466888999999999999
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEE
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARI 353 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l 353 (526)
+.+++.+.+.+. +..++.++++..+.....+. . .....+.|+|+|++....++.. ..++++|
T Consensus 132 ~~~~~~l~~~g~-~~~~i~~~~~~~~~~~~~~~-~----------~~~~~~~i~yaG~l~k~~~l~~------~~~~~~l 193 (333)
T PRK09814 132 KKMKDRLVEEGL-TTDKIIVQGIFDYLNDIELV-K----------TPSFQKKINFAGNLEKSPFLKN------WSQGIKL 193 (333)
T ss_pred HHHHHHHHHcCC-CcCceEeccccccccccccc-c----------cccCCceEEEecChhhchHHHh------cCCCCeE
Confidence 999999988754 55677777665443211111 0 1234568999999985433221 3468999
Q ss_pred EEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC-----------CCCCcHHHHHHHHcCCcEEEeC
Q 009759 354 AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-----------SETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 354 ~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~-----------~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+++|+|+..+ ....+|+|+|+++.+++..+|+. |+.+++.. .-.+|.++.|+||+|+|||+++
T Consensus 194 ~i~G~g~~~~-----~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~ 267 (333)
T PRK09814 194 TVFGPNPEDL-----ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS 267 (333)
T ss_pred EEECCCcccc-----ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC
Confidence 9999987544 12348999999999999999998 76665432 1367999999999999999999
Q ss_pred CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 009759 423 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRT 486 (526)
Q Consensus 423 ~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~ 486 (526)
.++..+++ +++.+|++++ +.++++++|.++ +++.+++|++++++..+++.--...++
T Consensus 268 ~~~~~~~V---~~~~~G~~v~--~~~el~~~l~~~--~~~~~~~m~~n~~~~~~~~~~g~~~~~ 324 (333)
T PRK09814 268 KAAIADFI---VENGLGFVVD--SLEELPEIIDNI--TEEEYQEMVENVKKISKLLRNGYFTKK 324 (333)
T ss_pred CccHHHHH---HhCCceEEeC--CHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 99999999 8899999998 888999999986 467789999999998866554443333
No 79
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.93 E-value=2.6e-24 Score=231.03 Aligned_cols=282 Identities=19% Similarity=0.176 Sum_probs=210.6
Q ss_pred CCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh-
Q 009759 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA- 283 (526)
Q Consensus 205 pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~- 283 (526)
-|+|++|+++.+.++.++..+..+.++.+..|..+|...--....+ +.-....+-.+|.|-+.+....+.+.+.
T Consensus 148 ~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~-----r~~il~gll~aDligF~t~~y~r~Fl~~~ 222 (797)
T PLN03063 148 GDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPS-----RSELLRAVLTADLIGFHTYDFARHFLSAC 222 (797)
T ss_pred CCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCC-----HHHHHHHHhcCCEEEeCCHHHHHHHHHHH
Confidence 3899999999998888888888899999999999886432222221 1122233456899999988888777651
Q ss_pred ----cc----------cCCCcEEEeecCCCCCCCCCCcccHHH---HHhhcCCCCCCcEEEEEecccccccHHHHHHHHH
Q 009759 284 ----RV----------TAANKIRIWKKGVDSESFHPRFRSSEM---RWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 346 (526)
Q Consensus 284 ----~~----------~~~~ki~vi~ngid~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~ 346 (526)
+. ....++.++|+|||.+.|.+....... ...+.....++++|+++||+++.||++.+++|++
T Consensus 223 ~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Afe 302 (797)
T PLN03063 223 TRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQKYLAFE 302 (797)
T ss_pred HHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHHHHHHH
Confidence 10 122468899999999887543222111 1111111236778999999999999999999998
Q ss_pred hC----CCc----EEEEEe-----CCccHHHHHHHhcCC--------------CeE-EecccChhhHHHHHHcCcEEEec
Q 009759 347 RL----PEA----RIAFIG-----DGPYREELEKMFTGM--------------PAV-FTGMLLGEELSQAYASGDVFVMP 398 (526)
Q Consensus 347 ~l----~~~----~l~ivG-----~g~~~~~l~~l~~~~--------------~V~-~~g~v~~~~l~~~~~~aDv~v~p 398 (526)
.+ |++ .|+.++ +++..+.+++.+.+. .|+ +.+.++.+++..+|+.||++|+|
T Consensus 303 ~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvt 382 (797)
T PLN03063 303 KFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVT 382 (797)
T ss_pred HHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeC
Confidence 75 554 344333 334444444333211 233 33578999999999999999999
Q ss_pred CCCCCCcHHHHHHHHcCCc----EEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHHHHHH
Q 009759 399 SESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQ 473 (526)
Q Consensus 399 s~~e~~~~~ilEAma~G~P----vI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~~a~~ 473 (526)
|..||+|++++||||||+| +|++..+|..+.+ +..|+++++.|+++++++|.++++ +++++++..+..++
T Consensus 383 SlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-----~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~ 457 (797)
T PLN03063 383 SLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-----GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQ 457 (797)
T ss_pred ccccccCcchhhHheeecCCCCCEEeeCCcCchhhh-----cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999988877 557999999999999999999999 78888888899999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 474 EMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 474 ~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
++.+++|...++.++ .-++++..
T Consensus 458 ~v~~~~~~~Wa~~fl-~~l~~~~~ 480 (797)
T PLN03063 458 YVKTHSAQKWADDFM-SELNDIIV 480 (797)
T ss_pred hhhhCCHHHHHHHHH-HHHHHHhh
Confidence 999999999999998 44455443
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.92 E-value=2.8e-23 Score=193.51 Aligned_cols=220 Identities=35% Similarity=0.513 Sum_probs=166.7
Q ss_pred EEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHH
Q 009759 121 IALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEV 200 (526)
Q Consensus 121 Iliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 200 (526)
|++++.. +.+..||.+.+...+++.|.++||+|+++. .....+.+.+
T Consensus 1 i~~i~~~-~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~--------------------------------~~~~~~~~~~ 47 (229)
T cd01635 1 ILLVSTP-LLPGGGGVELVLLDLAKALARRGHEVEVVA--------------------------------LLLLLLLRIL 47 (229)
T ss_pred Ceeeccc-cCCCCCCchhHHHHHHHHHHHcCCeEEEEE--------------------------------echHHHHHHH
Confidence 3455543 235589999999999999999999999997 1234566677
Q ss_pred HhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHH
Q 009759 201 ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDL 280 (526)
Q Consensus 201 ~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l 280 (526)
++.+||+||++++...........+..++|++++.|+.++........ .........++..
T Consensus 48 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~--------~~~~~~~~~~~~~----------- 108 (229)
T cd01635 48 RGFKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGVNRSLLEGVPL--------SLLALSIGLADKV----------- 108 (229)
T ss_pred hhcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcCccHhhcccCcH--------HHHHHHHhhcceE-----------
Confidence 778999999999766655444566778999999999987643322110 0011111111111
Q ss_pred HHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEE
Q 009759 281 EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFI 356 (526)
Q Consensus 281 ~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~iv 356 (526)
++|++.+.||++.+++++..+ ++++++++
T Consensus 109 -----------------------------------------------~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~ 141 (229)
T cd01635 109 -----------------------------------------------FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIA 141 (229)
T ss_pred -----------------------------------------------EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 999999999999999999887 37999999
Q ss_pred eCCccHHHHHH----HhcCCCeEEecccCh-hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceec
Q 009759 357 GDGPYREELEK----MFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIP 431 (526)
Q Consensus 357 G~g~~~~~l~~----l~~~~~V~~~g~v~~-~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~ 431 (526)
|.+........ .....+|.+.|+++. +++..+++.||++++|+..|++|++++|||++|+|+|+++.++..|++
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i- 220 (229)
T cd01635 142 GDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIV- 220 (229)
T ss_pred eCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcceEE-
Confidence 98876665543 222337999999844 566666666999999999999999999999999999999999999988
Q ss_pred ccCCCceeEee
Q 009759 432 EDQDGKIGYLF 442 (526)
Q Consensus 432 ~~~~~~~g~~~ 442 (526)
.++.+|+++
T Consensus 221 --~~~~~g~~~ 229 (229)
T cd01635 221 --EDGLTGLLV 229 (229)
T ss_pred --ECCCceEEC
Confidence 788888864
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.91 E-value=2.4e-23 Score=224.39 Aligned_cols=280 Identities=20% Similarity=0.271 Sum_probs=204.3
Q ss_pred CCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhc
Q 009759 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 284 (526)
Q Consensus 205 pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~ 284 (526)
-|+|++|+++.+.++.++..+....++.+..|-.+|...--.... .+.-.-..+-.+|.|-+.+....+.+.+.-
T Consensus 134 ~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp-----~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 134 GDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLP-----WREEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCC-----ChHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 499999999998888887777778899999999888533222211 112223345568999888888776654421
Q ss_pred ----c-----------cCCCcEEEeecCCCCCCCCCCcccHHHH---HhhcCCCCCCcEEEEEecccccccHHHHHHHHH
Q 009759 285 ----V-----------TAANKIRIWKKGVDSESFHPRFRSSEMR---WRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 346 (526)
Q Consensus 285 ----~-----------~~~~ki~vi~ngid~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~ 346 (526)
+ ....++.++|+|||.+.|.+.......+ ..+.....++++|+++||+++.||+..+++|++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~ 288 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFE 288 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHHHHHHH
Confidence 1 0123688999999999886543222111 111112346779999999999999999999998
Q ss_pred hC----CC----cEEEEEeC----C-ccHHHH----HHHhcCC----------C-eEEecccChhhHHHHHHcCcEEEec
Q 009759 347 RL----PE----ARIAFIGD----G-PYREEL----EKMFTGM----------P-AVFTGMLLGEELSQAYASGDVFVMP 398 (526)
Q Consensus 347 ~l----~~----~~l~ivG~----g-~~~~~l----~~l~~~~----------~-V~~~g~v~~~~l~~~~~~aDv~v~p 398 (526)
++ |+ ++|+++|. | +..+++ ++++.+. . +.+.|+++.+++..+|+.||++++|
T Consensus 289 ~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~ 368 (726)
T PRK14501 289 RFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVT 368 (726)
T ss_pred HHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEec
Confidence 75 43 67888872 3 222333 3332211 1 3467899999999999999999999
Q ss_pred CCCCCCcHHHHHHHHcC-----CcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC-HHHHHHHHHHHH
Q 009759 399 SESETLGLVVLEAMSSG-----IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAAR 472 (526)
Q Consensus 399 s~~e~~~~~ilEAma~G-----~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d-~~~~~~~~~~a~ 472 (526)
|..||+|++++|||||| .||++...|+..++. .|+++++.|+++++++|.+++.+ .+.+++..++++
T Consensus 369 S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~-------~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~ 441 (726)
T PRK14501 369 PLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA-------EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQ 441 (726)
T ss_pred ccccccCcccceEEEEcCCCCceEEEecccchhHHhC-------cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999994 466677777777765 38999999999999999999985 345555566788
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 473 QEMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 473 ~~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
+.+++|||+.++++++ ..|+++..
T Consensus 442 ~~v~~~~~~~w~~~~l-~~l~~~~~ 465 (726)
T PRK14501 442 ERLRRYDVHKWASDFL-DELREAAE 465 (726)
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHh
Confidence 8889999999999998 66666544
No 82
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.90 E-value=2.7e-23 Score=185.14 Aligned_cols=152 Identities=38% Similarity=0.759 Sum_probs=136.6
Q ss_pred CCCCcEEEEEecccccccHHHHHHHHHhC-----CCcEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHH
Q 009759 320 EPDKPLIVHVGRLGVEKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYA 390 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~li~a~~~l-----~~~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~ 390 (526)
..++++|+++|++.+.||++.+++++..+ +++.++|+|.+.....+...+... ++.+.|.++.+++..+|+
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 91 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYK 91 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccc
Confidence 56888999999999999999999999865 689999999777777776665533 699999999899999999
Q ss_pred cCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 009759 391 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQA 470 (526)
Q Consensus 391 ~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~ 470 (526)
.||++|+||..|++|++++|||++|+|||+++.|+..+++ .++.+|+++++.|+++++++|.+++++++.++.|+++
T Consensus 92 ~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~ 168 (172)
T PF00534_consen 92 SSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII---NDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKN 168 (172)
T ss_dssp HTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS---GTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeccccccccccccccccccccccceeeccccCCceee---ccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred HHHH
Q 009759 471 ARQE 474 (526)
Q Consensus 471 a~~~ 474 (526)
++++
T Consensus 169 ~~~~ 172 (172)
T PF00534_consen 169 ARER 172 (172)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 9874
No 83
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.90 E-value=5.5e-22 Score=200.14 Aligned_cols=333 Identities=17% Similarity=0.140 Sum_probs=210.3
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce-eccccccCCCcc----ccccchhcc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK-LIGSRSFPCPWY----QKVPLSLAL 192 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~ 192 (526)
+|||++.+. ..||.-.-.. ++++|++.++++.++.......+. .... ......++.... .........
T Consensus 1 ~~ki~i~~G-----gt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 73 (380)
T PRK00025 1 PLRIAIVAG-----EVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQA-AGCESLFDMEELAVMGLVEVLPRLPRLLKI 73 (380)
T ss_pred CceEEEEec-----CcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHh-CCCccccCHHHhhhccHHHHHHHHHHHHHH
Confidence 379987764 3355554455 999999999999998865422111 1111 011111111100 111112345
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
...+.+++++++||+||+++...........++..++|++++.+.... .+.. ...+.+.+.+|.+++.
T Consensus 74 ~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~--------~~~~----~~~~~~~~~~d~i~~~ 141 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW--------AWRQ----GRAFKIAKATDHVLAL 141 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh--------hcCc----hHHHHHHHHHhhheeC
Confidence 567888899999999999864322222233456679999876554210 0111 1123357789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEE-EEEecc-ccc-ccHHHHHHHHHhC-
Q 009759 273 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI-VHVGRL-GVE-KSLDFLKRVMDRL- 348 (526)
Q Consensus 273 S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~vG~l-~~~-Kg~~~li~a~~~l- 348 (526)
++..++.+.+.+. ++.+++|++..... ........+.+++. .++.+++ ++.|+- ... ++++.++++++.+
T Consensus 142 ~~~~~~~~~~~g~----~~~~~G~p~~~~~~-~~~~~~~~~~~l~~-~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~ 215 (380)
T PRK00025 142 FPFEAAFYDKLGV----PVTFVGHPLADAIP-LLPDRAAARARLGL-DPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQ 215 (380)
T ss_pred CccCHHHHHhcCC----CeEEECcCHHHhcc-cccChHHHHHHcCC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999888876542 36677766644322 11223455556654 3345554 455533 333 4468888877655
Q ss_pred ---CCcEEEEEeC-CccHHHHHHHhcCC---CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 349 ---PEARIAFIGD-GPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 349 ---~~~~l~ivG~-g~~~~~l~~l~~~~---~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
++++++++|. +...+.+++...+. ++.+. .+++..+|+.||++|++| |.+.+|||++|+|+|+.
T Consensus 216 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 216 QRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL----DGQKREAMAAADAALAAS-----GTVTLELALLKVPMVVG 286 (380)
T ss_pred HhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE----cccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEE
Confidence 5789999875 55667777766543 34442 258999999999999987 78888999999999977
Q ss_pred -----------------CCCCCCceecccCCC--ceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHH
Q 009759 422 -----------------RAGGIPDIIPEDQDG--KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 482 (526)
Q Consensus 422 -----------------~~gg~~e~v~~~~~~--~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~ 482 (526)
+.+++++++ .++ ..+++.+..|++++++++.++++|++.+++|++++.+..+.. -..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~ 362 (380)
T PRK00025 287 YKVSPLTFWIAKRLVKVPYVSLPNLL---AGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCG 362 (380)
T ss_pred EccCHHHHHHHHHHHcCCeeehHHHh---cCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCC
Confidence 345556666 443 345667778999999999999999999999999886666543 223
Q ss_pred HHHHHH
Q 009759 483 ATRTIR 488 (526)
Q Consensus 483 ~~~~~~ 488 (526)
.++++.
T Consensus 363 a~~~~~ 368 (380)
T PRK00025 363 ADERAA 368 (380)
T ss_pred HHHHHH
Confidence 444444
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.90 E-value=4e-22 Score=199.76 Aligned_cols=343 Identities=17% Similarity=0.151 Sum_probs=220.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceecccc-ccCCCcc----ccccchhcc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSR-SFPCPWY----QKVPLSLAL 192 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~ 192 (526)
|||++++..-| .-..+..++++|.+. +.++.++.++........-.+..++. .+..... .........
T Consensus 1 ~~i~~~~gtr~------~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 74 (365)
T TIGR00236 1 LKVSIVLGTRP------EAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNM 74 (365)
T ss_pred CeEEEEEecCH------HHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHH
Confidence 79999976543 225578899999886 66777776654321100000011111 1111110 001112233
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHH-HhhcCcEEEe
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF-LHRAADLTLV 271 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ii~ 271 (526)
...+.+++++++||+||+|+.....+.+.++++..++|++...++... . ... ..... ...+. ..+.+|.+++
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s-~-~~~--~~~~~---~~~r~~~~~~ad~~~~ 147 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRT-G-DRY--SPMPE---EINRQLTGHIADLHFA 147 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCc-C-CCC--CCCcc---HHHHHHHHHHHHhccC
Confidence 467888999999999999986666676778888999998754333210 0 000 00101 11232 3456899999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCC-CCCCCCCC-cccHHHHHhhcCCCCCCcEEEEEe-cc-cccccHHHHHHHHHh
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPR-FRSSEMRWRLSNGEPDKPLIVHVG-RL-GVEKSLDFLKRVMDR 347 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngi-d~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~vG-~l-~~~Kg~~~li~a~~~ 347 (526)
+|+..++.+.+.+ .+.+++.+++|++ |...+... ......+.+++ .++.++++.| +. ...|+++.+++++..
T Consensus 148 ~s~~~~~~l~~~G-~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~---~~~~~vl~~~hr~~~~~k~~~~ll~a~~~ 223 (365)
T TIGR00236 148 PTEQAKDNLLREN-VKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG---EDKRYILLTLHRRENVGEPLENIFKAIRE 223 (365)
T ss_pred CCHHHHHHHHHcC-CCcccEEEeCChHHHHHHHHHhhccchhHHHhcC---CCCCEEEEecCchhhhhhHHHHHHHHHHH
Confidence 9999999998875 5778999999996 43222111 11223333332 2334555555 43 345899999999987
Q ss_pred C----CCcEEEEEeCC-c-cHHHHHHHhc-CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEE
Q 009759 348 L----PEARIAFIGDG-P-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 420 (526)
Q Consensus 348 l----~~~~l~ivG~g-~-~~~~l~~l~~-~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~ 420 (526)
+ +++++++.|.+ + ..+.+.+... ..+|++.|.++..++..+++.||+++.+| |..++|||++|+|||+
T Consensus 224 l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~ 298 (365)
T TIGR00236 224 IVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLV 298 (365)
T ss_pred HHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEE
Confidence 6 57888887643 2 2222333322 23799999999889999999999999887 5668999999999999
Q ss_pred e-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 421 V-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 421 ~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
+ +.|+.++.+ +++ .++++. .|++++++++.++++|++.+++++++...+.+..+++.+++.+.
T Consensus 299 ~~~~~~~~e~~---~~g-~~~lv~-~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 299 LRDTTERPETV---EAG-TNKLVG-TDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELL 362 (365)
T ss_pred CCCCCCChHHH---hcC-ceEEeC-CCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHH
Confidence 6 678888888 655 455553 69999999999999999988888766533323455555555553
No 85
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.89 E-value=1.7e-21 Score=191.55 Aligned_cols=363 Identities=19% Similarity=0.218 Sum_probs=241.0
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHH---------CCCeEEEEEeCCCCCc----------cccC---ceeccc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE---------MGDEVMVVTTHEGVPQ----------EFYG---AKLIGS 175 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~---------~G~~V~vi~~~~~~~~----------~~~~---~~~~~~ 175 (526)
.+++++.. |....||.++-....+-.+.. .|++|.+++....... ...+ +.++..
T Consensus 34 ~~~~~~~~---~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~ 110 (495)
T KOG0853|consen 34 FEHVTFIH---PDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGD 110 (495)
T ss_pred chhheeec---cccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEe
Confidence 35676664 356778888888888888888 9999999997543321 0011 111111
Q ss_pred cccCCCc---cccc-----cchhcc-cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhc----CCCEEEEEecCCccc
Q 009759 176 RSFPCPW---YQKV-----PLSLAL-SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLL----CVPIVMSYHTHVPVY 242 (526)
Q Consensus 176 ~~~~~~~---~~~~-----~~~~~~-~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~----~~p~v~~~h~~~~~~ 242 (526)
. .+... .... ...++. ...+.+++ ++.|.|++...... ..+..... ...+.+++|.....+
T Consensus 111 ~-lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~--~~~d~~i~d~~~~~---~~l~~~~~~p~~~~~i~~~~h~~~~ll 184 (495)
T KOG0853|consen 111 W-LPRAMGQFLEQVAGCAYLRILRIPFGILFKWA--EKVDPIIEDFVSAC---VPLLKQLSGPDVIIKIYFYCHFPDSLL 184 (495)
T ss_pred e-cCcccchhhhhhhccceeEEEEeccchhhhhh--hhhceeecchHHHH---HHHHHHhcCCcccceeEEeccchHHHh
Confidence 1 11111 0000 000111 11223333 46787777654221 12222333 255677777755444
Q ss_pred cccc--ccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcc-cCCCcEEEeecCCCCCCCCCCcccH--HHHHh--
Q 009759 243 IPRY--TFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARV-TAANKIRIWKKGVDSESFHPRFRSS--EMRWR-- 315 (526)
Q Consensus 243 ~~~~--~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~-~~~~ki~vi~ngid~~~~~~~~~~~--~~~~~-- 315 (526)
..+. ...+........+......+|.+++.+...+..+..... ....++.+.+.++|.+.+.+..... +.+..
T Consensus 185 a~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r 264 (495)
T KOG0853|consen 185 AKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVR 264 (495)
T ss_pred ccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccc
Confidence 4432 223334444566667778899999999999888876653 2334488888899987766421111 11111
Q ss_pred hcCC-CCCCcEEEEEecccccccHHHHHHHHHhC---------CCcEEEEEeCC----------ccHHHHHHHhcCC---
Q 009759 316 LSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL---------PEARIAFIGDG----------PYREELEKMFTGM--- 372 (526)
Q Consensus 316 ~~~~-~~~~~~i~~vG~l~~~Kg~~~li~a~~~l---------~~~~l~ivG~g----------~~~~~l~~l~~~~--- 372 (526)
.... ......+..+.++.+.||++++++++..+ ++.++.+.|+. .+.+++.++++++
T Consensus 265 ~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~ 344 (495)
T KOG0853|consen 265 LYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLL 344 (495)
T ss_pred eeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCcc
Confidence 1111 22355667788899999999999988766 24678888832 1445666677655
Q ss_pred --CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHH--
Q 009759 373 --PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLD-- 448 (526)
Q Consensus 373 --~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~-- 448 (526)
.|.|+...+..+...+++.+++++..-..|.||++++|||+||+|||+++.||..|++ .++.+|+++++ +.+
T Consensus 345 g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV---~~~~tG~l~dp-~~e~~ 420 (495)
T KOG0853|consen 345 GQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIV---VHGVTGLLIDP-GQEAV 420 (495)
T ss_pred CceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEE---EcCCcceeeCC-chHHH
Confidence 2667677776677777888887776555699999999999999999999999999999 99999999999 555
Q ss_pred -HHHHHHHHhhhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Q 009759 449 -DCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 449 -~la~ai~~ll~d~~~~~~~~~~a~~~~~-~fs~~~~~~~~~~~ly~~ 494 (526)
.+++++.++..|+++|.+|+++++++++ .|+|.++.+++. .+...
T Consensus 421 ~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~-~~~~~ 467 (495)
T KOG0853|consen 421 AELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIA-SVLGK 467 (495)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHhHh
Confidence 6999999999999999999999999995 699999998886 55543
No 86
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.89 E-value=3.2e-21 Score=193.37 Aligned_cols=322 Identities=16% Similarity=0.140 Sum_probs=211.3
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccc----cCceeccccccCCCcc----ccccchh
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEF----YGAKLIGSRSFPCPWY----QKVPLSL 190 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~ 190 (526)
||++++..-| .-..+..++++|++. |+++.++.++......+ ..........+..... .......
T Consensus 1 ~i~~~~gtr~------~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (363)
T cd03786 1 KILVVTGTRP------EYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTA 74 (363)
T ss_pred CEEEEEecCH------HHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHH
Confidence 5777765432 124578899999987 89999888764332221 0000000001111111 1112233
Q ss_pred cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEE
Q 009759 191 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 270 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 270 (526)
.....+.+.+++.+||+||+|+.....+.+..+++..++|++...|+....... . . .......+.+.+|.++
T Consensus 75 ~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~~-~----~---~~~~r~~~~~~ad~~~ 146 (363)
T cd03786 75 GLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRSFDRG-M----P---DEENRHAIDKLSDLHF 146 (363)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecccccCCCC-C----C---chHHHHHHHHHhhhcc
Confidence 445677888888999999999865556666777888899988765543221000 0 0 0112233567889999
Q ss_pred eCChhHHHHHHHhcccCCCcEEEeecCC-CCCCCCCCccc-HHHHHhhcCCCCCCcEEEEEecccc---cccHHHHHHHH
Q 009759 271 VPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRS-SEMRWRLSNGEPDKPLIVHVGRLGV---EKSLDFLKRVM 345 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~~~ki~vi~ngi-d~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vG~l~~---~Kg~~~li~a~ 345 (526)
++++..++.+.+.+. +.+++.+++|++ |...+.+.... ...+...+. .+++.++++.|+... .|+++.+++++
T Consensus 147 ~~s~~~~~~l~~~G~-~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~vlv~~~r~~~~~~~k~~~~l~~al 224 (363)
T cd03786 147 APTEEARRNLLQEGE-PPERIFVVGNTMIDALLRLLELAKKELILELLGL-LPKKYILVTLHRVENVDDGEQLEEILEAL 224 (363)
T ss_pred CCCHHHHHHHHHcCC-CcccEEEECchHHHHHHHHHHhhccchhhhhccc-CCCCEEEEEeCCccccCChHHHHHHHHHH
Confidence 999999999988764 778999999985 43322211111 111223332 344556778888764 79999999999
Q ss_pred HhCC--CcEEEEEeCCccHHHHHHHhc-----CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcE
Q 009759 346 DRLP--EARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 418 (526)
Q Consensus 346 ~~l~--~~~l~ivG~g~~~~~l~~l~~-----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~Pv 418 (526)
+.+. ++.+++.|++...+.+++... ..+|.+.|....+++..+|+.||++|.+|. ..+.|||++|+|+
T Consensus 225 ~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg-----gi~~Ea~~~g~Pv 299 (363)
T cd03786 225 AELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG-----GIQEEASFLGVPV 299 (363)
T ss_pred HHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc-----cHHhhhhhcCCCE
Confidence 8874 367777677666667766543 247999998888999999999999999984 3579999999999
Q ss_pred EEeCC-CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHH
Q 009759 419 VGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 467 (526)
Q Consensus 419 I~~~~-gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~ 467 (526)
|+++. +...+.+ ++| .++.+. .|+++++++|.++++++..+.+|
T Consensus 300 I~~~~~~~~~~~~---~~g-~~~~~~-~~~~~i~~~i~~ll~~~~~~~~~ 344 (363)
T cd03786 300 LNLRDRTERPETV---ESG-TNVLVG-TDPEAILAAIEKLLSDEFAYSLM 344 (363)
T ss_pred EeeCCCCccchhh---hee-eEEecC-CCHHHHHHHHHHHhcCchhhhcC
Confidence 99864 3444555 333 222232 37999999999999998776665
No 87
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.7e-19 Score=162.37 Aligned_cols=360 Identities=18% Similarity=0.247 Sum_probs=248.0
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-c---ccCceeccccccCCCccccccch
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-E---FYGAKLIGSRSFPCPWYQKVPLS 189 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 189 (526)
.++++.++++++-. + =|-+-++..-|..|++.|++|.++......+. + ...+++.+....+ .....+..
T Consensus 8 ~~~~k~ra~vvVLG----D-vGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~--~~~~~p~~ 80 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLG----D-VGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP--FLQGGPRV 80 (444)
T ss_pred cccccceEEEEEec----c-cCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCc--ccCCCchh
Confidence 45555677666532 1 36678899999999999999999997665322 1 1333444333333 11111111
Q ss_pred --------hcccHHHHHHHHhcCCCEEEECCCchH--HHHHHHHHHhcCCCEEEEEecCCcc-cc--cccccccccchHH
Q 009759 190 --------LALSPRIISEVARFKPDIIHASSPGIM--VFGALIIAKLLCVPIVMSYHTHVPV-YI--PRYTFSWLVKPMW 256 (526)
Q Consensus 190 --------~~~~~~l~~~l~~~~pDiV~~~~~~~~--~~~~~~~~~~~~~p~v~~~h~~~~~-~~--~~~~~~~~~~~~~ 256 (526)
+.+..-++.++....+|++.+++|... ...+.++....+.+++++.|+.... .. .......+.+..+
T Consensus 81 ~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~ 160 (444)
T KOG2941|consen 81 LFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVR 160 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHH
Confidence 111112233333568999999997533 2345556678899999999996432 11 1112234456677
Q ss_pred HHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCC-----CCC----CCCCc-----------c-----cHH
Q 009759 257 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD-----SES----FHPRF-----------R-----SSE 311 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid-----~~~----~~~~~-----------~-----~~~ 311 (526)
++++.+-+.||.-+|+++.+++.+.+..+.. +..+++.--. .+. |.+.. . ...
T Consensus 161 ~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~ta 238 (444)
T KOG2941|consen 161 WLEKYFGKLADYNLCVTKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTA 238 (444)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhh
Confidence 8999999999999999999999988877642 4444442111 000 10000 0 001
Q ss_pred HHHhhc-----CCCCCCcEEEEEecccccccHHHHHHHHHhC-----------CCcEEEEEeCCccHHHHHHHhcCCC--
Q 009759 312 MRWRLS-----NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-----------PEARIAFIGDGPYREELEKMFTGMP-- 373 (526)
Q Consensus 312 ~~~~~~-----~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l-----------~~~~l~ivG~g~~~~~l~~l~~~~~-- 373 (526)
+..+.. ...+...+++...++.+..++..+++|+... |.+-.+|.|.|+.++...+.+.+.+
T Consensus 239 f~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~ 318 (444)
T KOG2941|consen 239 FTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQ 318 (444)
T ss_pred HhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhccc
Confidence 111111 1122344566777889999999999999732 6778889999999999998888774
Q ss_pred -eE-EecccChhhHHHHHHcCcEEEec--CC-CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHH
Q 009759 374 -AV-FTGMLLGEELSQAYASGDVFVMP--SE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLD 448 (526)
Q Consensus 374 -V~-~~g~v~~~~l~~~~~~aDv~v~p--s~-~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~ 448 (526)
|. ...|+.-||...+++.||+.|+- |. .-..|+++++-..||+||++-+...+.|++ ++++||++++ |.+
T Consensus 319 ~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELV---kh~eNGlvF~--Ds~ 393 (444)
T KOG2941|consen 319 HVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELV---KHGENGLVFE--DSE 393 (444)
T ss_pred ceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHH---hcCCCceEec--cHH
Confidence 43 35678889999999999988764 32 345799999999999999999999999999 9999999998 999
Q ss_pred HHHHHHHHhhh----CHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 449 DCLSKLEPLLY----NQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 449 ~la~ai~~ll~----d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
++++.+..++. +.+...++.+++++. +...|+...++..
T Consensus 394 eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~-~e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 394 ELAEQLQMLFKNFPDNADELNQLKKNLREE-QELRWDESWERTA 436 (444)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhHHH-HhhhHHHHHHHhh
Confidence 99999999998 888899999988887 5677777666654
No 88
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.87 E-value=7.5e-20 Score=167.43 Aligned_cols=360 Identities=14% Similarity=0.181 Sum_probs=237.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC-eEEEEEeCCCCCcc---------ccCceec--cccccCCC-----
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD-EVMVVTTHEGVPQE---------FYGAKLI--GSRSFPCP----- 181 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~-~V~vi~~~~~~~~~---------~~~~~~~--~~~~~~~~----- 181 (526)
..+.|+..+ ....||+++++..-.+.+++.-- .+.|+..++-.... ..++... .+....+.
T Consensus 44 ktvgfFHPY--CNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lV 121 (465)
T KOG1387|consen 44 KTVGFFHPY--CNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLV 121 (465)
T ss_pred eEEEEeccc--ccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeee
Confidence 467777543 25567888999999999988743 33344333311110 0111111 00000000
Q ss_pred ---cccc---ccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc------cccc---
Q 009759 182 ---WYQK---VPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY------IPRY--- 246 (526)
Q Consensus 182 ---~~~~---~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~------~~~~--- 246 (526)
.+.. +...+...--..+.+-++.|||.+-.....+.+.. .++..++|++.++|...-.. ..+.
T Consensus 122 ea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~--~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~ 199 (465)
T KOG1387|consen 122 EASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPI--FRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSG 199 (465)
T ss_pred ecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHH--HHHHccCceEEEEecccccHHHHHHHHhhhhcc
Confidence 0000 01111112223344556799998876554444432 34578999999999743210 0000
Q ss_pred ccccccchHH----HHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCC
Q 009759 247 TFSWLVKPMW----LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD 322 (526)
Q Consensus 247 ~~~~~~~~~~----~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~ 322 (526)
...|..-.++ .+...+-..+|.+++.|.+..+.+.+... ..++.+++.+.+.+.+.. ..+....+
T Consensus 200 ~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~--~~~~~iVyPPC~~e~lks---------~~~te~~r 268 (465)
T KOG1387|consen 200 ILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQ--SNTCSIVYPPCSTEDLKS---------KFGTEGER 268 (465)
T ss_pred hhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhh--ccceeEEcCCCCHHHHHH---------HhcccCCc
Confidence 1122222222 33444557899999999999999988775 367788887776663322 22222456
Q ss_pred CcEEEEEecccccccHHHHHH--HHH--hC------CCcEEEEEeCC---ccHHH---HHHHhcCC----CeEEecccCh
Q 009759 323 KPLIVHVGRLGVEKSLDFLKR--VMD--RL------PEARIAFIGDG---PYREE---LEKMFTGM----PAVFTGMLLG 382 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~--a~~--~l------~~~~l~ivG~g---~~~~~---l~~l~~~~----~V~~~g~v~~ 382 (526)
.+.++++|.+.+.|+.. +++ |+- +. ++++|+++|+- ++.+. ++.++.++ +|.|.-.+|.
T Consensus 269 ~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py 347 (465)
T KOG1387|consen 269 ENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPY 347 (465)
T ss_pred ceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCH
Confidence 67899999999999988 433 321 11 46899999953 23333 33333333 6999999999
Q ss_pred hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC-CceecccCCCceeEeeCCCCHHHHHHHHHHhhh-C
Q 009759 383 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-N 460 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~-~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d 460 (526)
+++..+|..|.+.|.....|.||+.+.|+||+|+.+|+.+.||. -|++.+.....+|++.. +.++.++++.+++. +
T Consensus 348 ~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~--t~~EYaE~iLkIv~~~ 425 (465)
T KOG1387|consen 348 EKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP--TDEEYAEAILKIVKLN 425 (465)
T ss_pred HHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC--ChHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999988765 47776655567899986 88899999999988 7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 461 QELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 461 ~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
++.+..++++||..+.+|+-....+.+. ..+..+++
T Consensus 426 ~~~r~~~r~~AR~s~~RFsE~~F~kd~~-~~i~kll~ 461 (465)
T KOG1387|consen 426 YDERNMMRRNARKSLARFGELKFDKDWE-NPICKLLE 461 (465)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHh-HHHHHhhc
Confidence 8889999999999999999999988886 55555553
No 89
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.86 E-value=2.7e-20 Score=187.32 Aligned_cols=275 Identities=17% Similarity=0.096 Sum_probs=208.8
Q ss_pred CCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhc
Q 009759 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 284 (526)
Q Consensus 205 pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~ 284 (526)
-|+|++|+++.+.++.++..+....++-+..|..+|...--....+ +.-....+-.+|.|-+.+...++.+.+.-
T Consensus 133 ~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~-----r~~ll~glL~aDliGFqt~~y~~~Fl~~~ 207 (487)
T TIGR02398 133 GATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVFNILPW-----REQIIGSLLCCDYIGFHIPRYVENFVDAA 207 (487)
T ss_pred CCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCChHHHhhCCc-----hHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 4899999999988888887777788999999998875432222111 12222334469999999988887665411
Q ss_pred ----cc--------------------------------CCCcEEEeecCCCCCCCCCCccc-------HHHHHhhcCCCC
Q 009759 285 ----VT--------------------------------AANKIRIWKKGVDSESFHPRFRS-------SEMRWRLSNGEP 321 (526)
Q Consensus 285 ----~~--------------------------------~~~ki~vi~ngid~~~~~~~~~~-------~~~~~~~~~~~~ 321 (526)
+. ..-++.++|.|||++.|...... ..++.++ .
T Consensus 208 ~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~----~ 283 (487)
T TIGR02398 208 RGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSEL----A 283 (487)
T ss_pred HHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHc----C
Confidence 10 11237889999999988543221 1233333 3
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhC----C----CcEEEEEeCCc---------cHHHHHHHhcCC-------C----
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDGP---------YREELEKMFTGM-------P---- 373 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l----~----~~~l~ivG~g~---------~~~~l~~l~~~~-------~---- 373 (526)
++.+|+.++|++..||+...++|++++ | ++.|+++|.+. +..++++++.+. +
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv 363 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPL 363 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccE
Confidence 678999999999999999999999876 5 47899888542 334455544432 1
Q ss_pred eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCC----cEEEeCCCCCCceecccCCCceeEeeCCCCHHH
Q 009759 374 AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDD 449 (526)
Q Consensus 374 V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~----PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~ 449 (526)
+.+.+.++.+++..+|+.|||++.++..||++++..|+++|+. |+|.|..+|..+.+ ..+++++|.|+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l------~~AllVNP~d~~~ 437 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL------KGALLTNPYDPVR 437 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhc------CCCEEECCCCHHH
Confidence 5678999999999999999999999999999999999999988 99999999988766 3489999999999
Q ss_pred HHHHHHHhhhCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 009759 450 CLSKLEPLLYNQ-ELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 450 la~ai~~ll~d~-~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~ 494 (526)
+|++|.+++..+ +++++..+..++.+.+++....++.+++++..+
T Consensus 438 ~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 438 MDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVSPQ 483 (487)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Confidence 999999999954 466666667778888999999999998666443
No 90
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=2.4e-18 Score=170.65 Aligned_cols=346 Identities=35% Similarity=0.541 Sum_probs=229.1
Q ss_pred CCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchh-cccHHHHHHHHhcC-C
Q 009759 130 FSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSL-ALSPRIISEVARFK-P 205 (526)
Q Consensus 130 ~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-p 205 (526)
.+..||.+.....+...+... ++.+..+....... ............ ........ .............. +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (381)
T COG0438 11 PPRVGGIERYVLELAKALRLLGRGHEVLVIAPEKLEG---LGIEVLRLPSVS---LPLLIVRLRPALLRLLLLLKRLLPY 84 (381)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCEEEEEecCcccccc---cCcceeeccCcc---ccccccccCccchHHHHHhcccccc
Confidence 356688888888888888875 44444444311100 000111110000 00000000 11112222222223 5
Q ss_pred CEEEECCCchHH--HHHHHHHHhcCCCEEEEEecCCcccccccccccc---cchHHH-HHHHHhhcCcEEEeCChhHHHH
Q 009759 206 DIIHASSPGIMV--FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL---VKPMWL-VIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 206 DiV~~~~~~~~~--~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
|+++.+...... ..........+.+.+...|............... ...... .........+.+++.+......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (381)
T COG0438 85 DIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKEL 164 (381)
T ss_pred ceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccchhhHHHHHHHHHHHHHhccccccEEEECCHHHHHH
Confidence 899887653332 2234445666788888888865422111111100 000111 1111112478889999888666
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCC--CcEEEEEecccccccHHHHHHHHHhCCC----cEE
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD--KPLIVHVGRLGVEKSLDFLKRVMDRLPE----ARI 353 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~vG~l~~~Kg~~~li~a~~~l~~----~~l 353 (526)
+..... ..++.+++++++.+.+..... . ...+ ...++++|++.+.||++.+++++..+++ +.+
T Consensus 165 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~ 233 (381)
T COG0438 165 LEALGV--PNKIVVIPNGIDTEKFAPARI--------G-LLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKL 233 (381)
T ss_pred HHHhCC--CCCceEecCCcCHHHcCcccc--------C-CCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEE
Confidence 666653 247889999999987764200 0 1222 3689999999999999999999998843 789
Q ss_pred EEEeCCccH-HHHHHHhc----CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCc
Q 009759 354 AFIGDGPYR-EELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 428 (526)
Q Consensus 354 ~ivG~g~~~-~~l~~l~~----~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e 428 (526)
+++|.++.. +.+..+.. ..+|.+.|+++.+++..+++.||++++|+..|++|++++|||++|+|||+++.++..+
T Consensus 234 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e 313 (381)
T COG0438 234 VIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE 313 (381)
T ss_pred EEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHH
Confidence 999988652 33443443 2469999999878888899999999999999999999999999999999999999999
Q ss_pred eecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Q 009759 429 IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 429 ~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l 496 (526)
++ .++.+|+++...|.+++++++..++++.+.++.+.+.+++.+ +.|+|+..++.+. ++|....
T Consensus 314 ~~---~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 378 (381)
T COG0438 314 VV---EDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLL-ELYEELL 378 (381)
T ss_pred Hh---cCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHH
Confidence 99 666668877776899999999999999888888888666666 6999999999987 6776654
No 91
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.82 E-value=2.2e-18 Score=178.84 Aligned_cols=293 Identities=16% Similarity=0.155 Sum_probs=209.6
Q ss_pred HHHHHHh--cCCCEEEECCCchHHHHHHHHHHh-------------cCCCEEEEEecCCccccccccccccc--------
Q 009759 196 IISEVAR--FKPDIIHASSPGIMVFGALIIAKL-------------LCVPIVMSYHTHVPVYIPRYTFSWLV-------- 252 (526)
Q Consensus 196 l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~-------------~~~p~v~~~h~~~~~~~~~~~~~~~~-------- 252 (526)
..+.++. .+||+||+|+++.......+.... .+..+++|+|+..+.-...+....+.
T Consensus 151 ~l~~l~~l~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~ 230 (601)
T TIGR02094 151 GVRALRALGIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAA 230 (601)
T ss_pred HHHHHHHcCCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhh
Confidence 3344443 589999999998766554432211 14678999999655432111100000
Q ss_pred -------------c------hHHHHHHHHhhcCcEEEeCChhHHHHHHHhcc-------cCCCcEEEeecCCCCCCCCCC
Q 009759 253 -------------K------PMWLVIKFLHRAADLTLVPSVAIGKDLEAARV-------TAANKIRIWKKGVDSESFHPR 306 (526)
Q Consensus 253 -------------~------~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~-------~~~~ki~vi~ngid~~~~~~~ 306 (526)
. ....+.+..+..+|.+.+||+...+....... ....++.-|.||||...|.+.
T Consensus 231 ~~gl~~~~~~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~ 310 (601)
T TIGR02094 231 NLGLPREQLLALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAP 310 (601)
T ss_pred HhCCCHHHHHhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCH
Confidence 0 11356777889999999999988875443222 113458889999999988764
Q ss_pred cccHH-----------------------------H-------HHhh-------------------------cC-CCCCCc
Q 009759 307 FRSSE-----------------------------M-------RWRL-------------------------SN-GEPDKP 324 (526)
Q Consensus 307 ~~~~~-----------------------------~-------~~~~-------------------------~~-~~~~~~ 324 (526)
....- + +..+ ++ ..++.+
T Consensus 311 ~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~ 390 (601)
T TIGR02094 311 ELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVL 390 (601)
T ss_pred HHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCc
Confidence 21100 0 0011 00 245778
Q ss_pred EEEEEecccccccHHHHHHHHHhC--------CCcEEEEEeCCc--------cHHHHHHHhcC--C--CeEEecccChhh
Q 009759 325 LIVHVGRLGVEKSLDFLKRVMDRL--------PEARIAFIGDGP--------YREELEKMFTG--M--PAVFTGMLLGEE 384 (526)
Q Consensus 325 ~i~~vG~l~~~Kg~~~li~a~~~l--------~~~~l~ivG~g~--------~~~~l~~l~~~--~--~V~~~g~v~~~~ 384 (526)
++++++|+..+||.++++.++.++ .+++|++.|.+. ..+.+..+.++ . +|.|+...+.+-
T Consensus 391 ~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~l 470 (601)
T TIGR02094 391 TIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINL 470 (601)
T ss_pred EEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHH
Confidence 999999999999999998887665 369999999875 45556666655 2 677777767667
Q ss_pred HHHHHHcCcEEEe-cCC-CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeC------------CCCHHHH
Q 009759 385 LSQAYASGDVFVM-PSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN------------PGDLDDC 450 (526)
Q Consensus 385 l~~~~~~aDv~v~-ps~-~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~------------~~d~~~l 450 (526)
.+.+++.||+.++ |++ +|++|+.-+-||..|.+.+++-.|...|.. ++.+||.+. ..|+++|
T Consensus 471 A~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~----~~~nGf~f~~~~~~~~~~~~d~~da~~l 546 (601)
T TIGR02094 471 ARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY----DGDNGWAIGDGEEYDDEEEQDRLDAEAL 546 (601)
T ss_pred HHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC----CCCcEEEECCCccccccccccCCCHHHH
Confidence 7799999999999 999 999999999999999999999888887776 467999998 3789999
Q ss_pred HHHHHHhh-----hC-----HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 009759 451 LSKLEPLL-----YN-----QELRETMGQAARQEM-EKYDWRAATRTIRNEQY 492 (526)
Q Consensus 451 a~ai~~ll-----~d-----~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly 492 (526)
.++|++.+ ++ |..|.++.+++.+.. ..|||++++++|.+..|
T Consensus 547 ~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 547 YDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 99997655 22 456888888887775 58999999999985544
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=1.1e-18 Score=186.45 Aligned_cols=277 Identities=17% Similarity=0.186 Sum_probs=206.2
Q ss_pred CCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhc
Q 009759 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 284 (526)
Q Consensus 205 pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~ 284 (526)
-|+|++|+++.+.++.++..+....++-+..|..+|...--....+ ...+. ..+-.||.|-+.+...++.+.+.-
T Consensus 232 gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~----r~elL-~glL~aDlIGFqT~~y~rhFl~~c 306 (934)
T PLN03064 232 GDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPS----RSELL-RSVLAADLVGFHTYDYARHFVSAC 306 (934)
T ss_pred CCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCc----HHHHH-HHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3899999999998888887788889999999998886432222221 11222 334569999999998888776411
Q ss_pred ----cc-----------CCCcEEEeecCCCCCCCCCCcccH-------HHHHhhcCCCCCCcEEEEEecccccccHHHHH
Q 009759 285 ----VT-----------AANKIRIWKKGVDSESFHPRFRSS-------EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLK 342 (526)
Q Consensus 285 ----~~-----------~~~ki~vi~ngid~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li 342 (526)
+. ..-++.++|-|||.+.|....... .++.++ .++.+|+.++|++..||+...+
T Consensus 307 ~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~----~g~kiIlgVDRLD~~KGI~~kL 382 (934)
T PLN03064 307 TRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERF----AGRKVMLGVDRLDMIKGIPQKI 382 (934)
T ss_pred HHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHh----CCceEEEEeeccccccCHHHHH
Confidence 10 012366789999998875432221 233332 3577999999999999999999
Q ss_pred HHHHhC----CCcE--EEEE-------eCCccHHH----HHHHhcCCC----------eEE-ecccChhhHHHHHHcCcE
Q 009759 343 RVMDRL----PEAR--IAFI-------GDGPYREE----LEKMFTGMP----------AVF-TGMLLGEELSQAYASGDV 394 (526)
Q Consensus 343 ~a~~~l----~~~~--l~iv-------G~g~~~~~----l~~l~~~~~----------V~~-~g~v~~~~l~~~~~~aDv 394 (526)
+|++++ |+++ ++++ |+++..+. +.+++...| |++ ...++.+++..+|+.|||
T Consensus 383 ~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV 462 (934)
T PLN03064 383 LAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDV 462 (934)
T ss_pred HHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCE
Confidence 998874 5542 5554 34443343 333333222 443 344888999999999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCC----cEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHH
Q 009759 395 FVMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQ 469 (526)
Q Consensus 395 ~v~ps~~e~~~~~ilEAma~G~----PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~ 469 (526)
+|++|..||++++..|||+|+. ++|.+..+|..+.+ +..++++++.|.++++++|.+++. +++++++..+
T Consensus 463 ~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L-----~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~ 537 (934)
T PLN03064 463 ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL-----GAGAILVNPWNITEVAASIAQALNMPEEEREKRHR 537 (934)
T ss_pred EEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh-----CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999954 44558888888877 446899999999999999999998 8899999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Q 009759 470 AARQEMEKYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 470 ~a~~~~~~fs~~~~~~~~~~~ly~~~ 495 (526)
..++.+..+++..+++.+++++.+..
T Consensus 538 ~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 538 HNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999987776543
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.79 E-value=4.3e-17 Score=163.30 Aligned_cols=323 Identities=16% Similarity=0.104 Sum_probs=198.3
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce-eccccccCCC----ccccccchhcccH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK-LIGSRSFPCP----WYQKVPLSLALSP 194 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~ 194 (526)
||++.+. ..||+-.-. .++++|+++|+++.++..+....+. .+.+ ......+... .............
T Consensus 7 ki~i~aG-----gtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~-~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~ 79 (385)
T TIGR00215 7 TIALVAG-----EASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAA-EGCEVLYSMEELSVMGLREVLGRLGRLLKIRK 79 (385)
T ss_pred eEEEEeC-----CccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHh-CcCccccChHHhhhccHHHHHHHHHHHHHHHH
Confidence 6766542 335554445 9999999999999999876432111 0100 0111111111 1112222334455
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
.+.+++++++||+|++.+...+.+.....++..|+|+++++. |... .|.. ...+.+.+.+|.+++.++
T Consensus 80 ~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~---P~~w-----aw~~----~~~r~l~~~~d~v~~~~~ 147 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS---PQVW-----AWRK----WRAKKIEKATDFLLAILP 147 (385)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC---CcHh-----hcCc----chHHHHHHHHhHhhccCC
Confidence 778889999999999998644344344467888999996542 1110 0110 125667789999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEE-e-cccc-cccHHHHHHHHHhC---
Q 009759 275 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHV-G-RLGV-EKSLDFLKRVMDRL--- 348 (526)
Q Consensus 275 ~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v-G-~l~~-~Kg~~~li~a~~~l--- 348 (526)
...+.+...+ .++.++.|++..............+.++++ .++.++|+++ | |..+ .|++..++++++.+
T Consensus 148 ~e~~~~~~~g----~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl-~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~ 222 (385)
T TIGR00215 148 FEKAFYQKKN----VPCRFVGHPLLDAIPLYKPDRKSAREKLGI-DHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQ 222 (385)
T ss_pred CcHHHHHhcC----CCEEEECCchhhhccccCCCHHHHHHHcCC-CCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHh
Confidence 9988887643 366678888744322111233445566655 4456666554 4 4444 67889999887765
Q ss_pred -CCcEEEEEe-CCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe-
Q 009759 349 -PEARIAFIG-DGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV- 421 (526)
Q Consensus 349 -~~~~l~ivG-~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~- 421 (526)
|++++++.+ .+...+.+++..+.. .|.+.+ .++..+|++||++|++| |.+.+|+|++|+|+|..
T Consensus 223 ~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~y 293 (385)
T TIGR00215 223 EPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLID----GDARKAMFAADAALLAS-----GTAALEAALIKTPMVVGY 293 (385)
T ss_pred CCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEEC----chHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEE
Confidence 577876654 444445555544322 344433 25678999999999998 77778999999998876
Q ss_pred CCCCC----------------CceecccCCCcee--EeeCCCCHHHHHHHHHHhhhCH----HHHHHHHHHHHHHHHhC
Q 009759 422 RAGGI----------------PDIIPEDQDGKIG--YLFNPGDLDDCLSKLEPLLYNQ----ELRETMGQAARQEMEKY 478 (526)
Q Consensus 422 ~~gg~----------------~e~v~~~~~~~~g--~~~~~~d~~~la~ai~~ll~d~----~~~~~~~~~a~~~~~~f 478 (526)
.+..+ ..++ .+.... ++-..-+++.+++.+.+++.|+ +.++++.+.-.+..+..
T Consensus 294 k~~pl~~~~~~~~~~~~~~~~~nil---~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 294 RMKPLTFLIARRLVKTDYISLPNIL---ANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred cCCHHHHHHHHHHHcCCeeeccHHh---cCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 22211 1122 111111 1223347899999999999999 88888777666555444
No 94
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=4.9e-16 Score=151.52 Aligned_cols=327 Identities=18% Similarity=0.184 Sum_probs=213.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCe-EEEEEeCCCCCccc---cCceeccccccCCCccccc------cc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDE-VMVVTTHEGVPQEF---YGAKLIGSRSFPCPWYQKV------PL 188 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~-V~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~ 188 (526)
|+|++.. ...||+-.....++++|.++|++ |.++....+..... .+.....+..-........ ..
T Consensus 1 ~~ivl~~-----gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~ 75 (357)
T COG0707 1 KKIVLTA-----GGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFK 75 (357)
T ss_pred CeEEEEe-----CCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHH
Confidence 4554544 34578888899999999999995 66665544332211 1222222221111111111 11
Q ss_pred hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcE
Q 009759 189 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 268 (526)
Q Consensus 189 ~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 268 (526)
.+......++++++++||+|+..+... ..+..++++..++|++++..|..+. ...+.+.+.++.
T Consensus 76 ~~~~~~~a~~il~~~kPd~vig~Ggyv-s~P~~~Aa~~~~iPv~ihEqn~~~G---------------~ank~~~~~a~~ 139 (357)
T COG0707 76 LLKGVLQARKILKKLKPDVVIGTGGYV-SGPVGIAAKLLGIPVIIHEQNAVPG---------------LANKILSKFAKK 139 (357)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCcc-ccHHHHHHHhCCCCEEEEecCCCcc---------------hhHHHhHHhhce
Confidence 233445677889999999999977533 3446677888999999988776543 234566777888
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEe-cccccccHHHHHHHHHh
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG-RLGVEKSLDFLKRVMDR 347 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG-~l~~~Kg~~~li~a~~~ 347 (526)
|.+.-+. ...+ .+.+++.+..|.+..+... . .....+... ..++++|+.+| +.+..+--+.+.++...
T Consensus 140 V~~~f~~-----~~~~-~~~~~~~~tG~Pvr~~~~~-~-~~~~~~~~~---~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~ 208 (357)
T COG0707 140 VASAFPK-----LEAG-VKPENVVVTGIPVRPEFEE-L-PAAEVRKDG---RLDKKTILVTGGSQGAKALNDLVPEALAK 208 (357)
T ss_pred eeecccc-----cccc-CCCCceEEecCcccHHhhc-c-chhhhhhhc---cCCCcEEEEECCcchhHHHHHHHHHHHHH
Confidence 8765554 1122 2456788999999877664 1 112222111 12566665555 55666655666777777
Q ss_pred CCC-cEEEE-EeCCccHHHHHHHhcCCC-eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 348 LPE-ARIAF-IGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 348 l~~-~~l~i-vG~g~~~~~l~~l~~~~~-V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
+.+ ++++. +|.+. .+++.....+.+ +++.++. +++..+|+.||++|. -+.++++.|..++|+|.|--..+
T Consensus 209 l~~~~~v~~~~G~~~-~~~~~~~~~~~~~~~v~~f~--~dm~~~~~~ADLvIs----RaGa~Ti~E~~a~g~P~IliP~p 281 (357)
T COG0707 209 LANRIQVIHQTGKND-LEELKSAYNELGVVRVLPFI--DDMAALLAAADLVIS----RAGALTIAELLALGVPAILVPYP 281 (357)
T ss_pred hhhCeEEEEEcCcch-HHHHHHHHhhcCcEEEeeHH--hhHHHHHHhccEEEe----CCcccHHHHHHHhCCCEEEeCCC
Confidence 764 66544 45544 556665555555 8888888 789999999999994 44579999999999999987665
Q ss_pred CC--------CceecccCCCceeEeeCCCC--HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 009759 425 GI--------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 487 (526)
Q Consensus 425 g~--------~e~v~~~~~~~~g~~~~~~d--~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~ 487 (526)
.. +..+ ++...|.+++..+ ++.+.+.|.+++++++..++|.+++++....-..+.+++.+
T Consensus 282 ~~~~~~Q~~NA~~l---~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~ 351 (357)
T COG0707 282 PGADGHQEYNAKFL---EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLL 351 (357)
T ss_pred CCccchHHHHHHHH---HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 33 1233 4556677776554 89999999999999999999999988776554555555444
No 95
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.75 E-value=1.6e-15 Score=149.77 Aligned_cols=322 Identities=19% Similarity=0.199 Sum_probs=194.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCcccc-cc-----c---h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQK-VP-----L---S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~---~ 189 (526)
||.++++. ..+||+-.-...++++|.+.||+|.+++...+..........+....++.....+ .. . .
T Consensus 1 ~~~i~~~~----GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 1 MKKIVFTG----GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred CCeEEEEc----CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHH
Confidence 44445544 3457777788999999999999999999776544332111111111111111111 01 1 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEE
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 269 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 269 (526)
.....+..+++++++||+|+.+.. +......++++..++|++++..+..+. ...+.+.+.++.+
T Consensus 77 ~~~~~~~~~i~~~~kPdvvi~~Gg-y~s~p~~~aa~~~~~p~~i~e~n~~~g---------------~~nr~~~~~a~~v 140 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDVIFSKGG-FVSVPVVIGGWLNRVPVLLHESDMTPG---------------LANKIALRFASKI 140 (352)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCc-hhhHHHHHHHHHcCCCEEEECCCCCcc---------------HHHHHHHHhhCEE
Confidence 223345667889999999999874 344556788899999998755553321 3356778889998
Q ss_pred EeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEe-cccccccH-HHHHHHHHh
Q 009759 270 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG-RLGVEKSL-DFLKRVMDR 347 (526)
Q Consensus 270 i~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG-~l~~~Kg~-~~li~a~~~ 347 (526)
++.-+...+.+ +.+++.++.+++..+..... ....+..+++ .+++++|+.+| +... +.+ +.+.+++..
T Consensus 141 ~~~f~~~~~~~------~~~k~~~tG~Pvr~~~~~~~--~~~~~~~~~l-~~~~~~iLv~GGS~Ga-~~in~~~~~~l~~ 210 (352)
T PRK12446 141 FVTFEEAAKHL------PKEKVIYTGSPVREEVLKGN--REKGLAFLGF-SRKKPVITIMGGSLGA-KKINETVREALPE 210 (352)
T ss_pred EEEccchhhhC------CCCCeEEECCcCCccccccc--chHHHHhcCC-CCCCcEEEEECCccch-HHHHHHHHHHHHh
Confidence 87554322221 34688888888877654322 2334444544 34556665555 4443 444 555566665
Q ss_pred C-CCcEEEE-EeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 348 L-PEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 348 l-~~~~l~i-vG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
+ .++++++ +|.....+.... . .++...+++. +++.++|+.||++| .-+.++++.|++++|+|.|......
T Consensus 211 l~~~~~vv~~~G~~~~~~~~~~-~--~~~~~~~f~~-~~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~ 282 (352)
T PRK12446 211 LLLKYQIVHLCGKGNLDDSLQN-K--EGYRQFEYVH-GELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSK 282 (352)
T ss_pred hccCcEEEEEeCCchHHHHHhh-c--CCcEEecchh-hhHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCC
Confidence 5 3566544 564432222222 1 2455567752 57999999999999 3455889999999999999886531
Q ss_pred ----CCc-----eecccCCCceeEeeC--CCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 426 ----IPD-----IIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 426 ----~~e-----~v~~~~~~~~g~~~~--~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
..+ .+ .+...+..+. .-+++.+.+++.++++|++.+++ ++ +++...+.++++.
T Consensus 283 ~~~~~~Q~~Na~~l---~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~~----~~~~~~~aa~~i~ 346 (352)
T PRK12446 283 FASRGDQILNAESF---ERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---AL----KKYNGKEAIQTII 346 (352)
T ss_pred CCCCchHHHHHHHH---HHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---HH----HHcCCCCHHHHHH
Confidence 111 23 3344455543 23688999999999988766532 22 2344445555554
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.72 E-value=2e-17 Score=140.79 Aligned_cols=127 Identities=32% Similarity=0.551 Sum_probs=93.4
Q ss_pred cEEEEEecccccccHHHHHH-HHHhC----CCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEec
Q 009759 324 PLIVHVGRLGVEKSLDFLKR-VMDRL----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 398 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~-a~~~l----~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~p 398 (526)
+.++++|++.+.|+++.+++ +++++ |+++|+|+|.++. .++++ ...+|+++|++ +++.++++.||+++.|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~~~~v~~~g~~--~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-RRPNVRFHGFV--EELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-HHCTEEEE-S---HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-cCCCEEEcCCH--HHHHHHHHhCCEEEEE
Confidence 57899999999999999999 76555 7999999998765 35555 34499999999 6899999999999999
Q ss_pred CC-CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 399 SE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 399 s~-~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
+. .++++++++|||++|+|||+++. +..++. +....|+++ .+|+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~---~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIV---EEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS------SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCc-chhhhe---eecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 86 67899999999999999999998 566666 445667776 77999999999999875
No 97
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.70 E-value=6.6e-15 Score=155.56 Aligned_cols=297 Identities=18% Similarity=0.164 Sum_probs=210.0
Q ss_pred cCCCEEEECCCchHHHHHH----HHHH----------hcCCCEEEEEecCCcccccccccccc-----------------
Q 009759 203 FKPDIIHASSPGIMVFGAL----IIAK----------LLCVPIVMSYHTHVPVYIPRYTFSWL----------------- 251 (526)
Q Consensus 203 ~~pDiV~~~~~~~~~~~~~----~~~~----------~~~~p~v~~~h~~~~~~~~~~~~~~~----------------- 251 (526)
.+||+||+|.++......- ++.. ..+..+++|+|+..+.....+....+
T Consensus 247 ~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~~~ 326 (778)
T cd04299 247 IKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRDR 326 (778)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCHHH
Confidence 4899999999877655441 1111 12467899999965432111110000
Q ss_pred -------c----chHHHHHHHHhhcCcEEEeCChhHHHHHHHhcc-------cCCCcEEEeecCCCCCCCC-CCc-----
Q 009759 252 -------V----KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARV-------TAANKIRIWKKGVDSESFH-PRF----- 307 (526)
Q Consensus 252 -------~----~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~-------~~~~ki~vi~ngid~~~~~-~~~----- 307 (526)
. .....+.+..+..++.+.++|+-..+..++.+. ....++.-|.|||+...|. |..
T Consensus 327 ~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~ 406 (778)
T cd04299 327 FLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYD 406 (778)
T ss_pred HhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHH
Confidence 0 012366778889999999999987554444221 1145688999999999887 310
Q ss_pred -----------------------cc-------HHHHHhh-------------------------cC-CCCCCcEEEEEec
Q 009759 308 -----------------------RS-------SEMRWRL-------------------------SN-GEPDKPLIVHVGR 331 (526)
Q Consensus 308 -----------------------~~-------~~~~~~~-------------------------~~-~~~~~~~i~~vG~ 331 (526)
.. ...+.++ +. ..++.++|+|+.|
T Consensus 407 ~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarR 486 (778)
T cd04299 407 RYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARR 486 (778)
T ss_pred HhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeec
Confidence 00 0011111 00 2356678999999
Q ss_pred ccccccHHHHHHHHHhC--------CCcEEEEEeCCc--------cHHHHHHHhcCC----CeEEecccChhhHHHHHHc
Q 009759 332 LGVEKSLDFLKRVMDRL--------PEARIAFIGDGP--------YREELEKMFTGM----PAVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 332 l~~~Kg~~~li~a~~~l--------~~~~l~ivG~g~--------~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~ 391 (526)
+..+|+.++++..+.++ .+++|++.|.+. ..+.+.++.++. +|.|+...+-+-...+++.
T Consensus 487 fa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG 566 (778)
T cd04299 487 FATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQG 566 (778)
T ss_pred chhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhh
Confidence 99999999998876655 369999999753 122444444421 5778777766667799999
Q ss_pred CcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCC------------CCHHHHHHHHHHh
Q 009759 392 GDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP------------GDLDDCLSKLEPL 457 (526)
Q Consensus 392 aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~------------~d~~~la~ai~~l 457 (526)
||+.++|++ .|.+|+.-+-||..|.+-+++-.|...|.. ++.+||.+.. .|.++|.+.|++-
T Consensus 567 ~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~----~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~ 642 (778)
T cd04299 567 VDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY----DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENE 642 (778)
T ss_pred hhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc----CCCCceEeCCCccccChhhcchhhHHHHHHHHHHH
Confidence 999999999 899999999999999999999999888876 5789999987 4667777777543
Q ss_pred hh----C------HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 009759 458 LY----N------QELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWRKKR 503 (526)
Q Consensus 458 l~----d------~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l~~~~~~~ 503 (526)
+- + |..|.+|.+++...+ -+|||++++++|.+.+|.-+..+++...
T Consensus 643 i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~~~~~~~~~ 699 (778)
T cd04299 643 VIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPAARRGRRLA 699 (778)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 32 3 667888888888887 5899999999999999988877766543
No 98
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.68 E-value=2.7e-16 Score=140.30 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=104.0
Q ss_pred EEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHH
Q 009759 121 IALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEV 200 (526)
Q Consensus 121 Iliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 200 (526)
|+++... .+..||+++++.+++++|+++||+|++++.......... ...................+.....+.+.+
T Consensus 1 ili~~~~--~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 76 (177)
T PF13439_consen 1 ILITNIF--LPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE--LVKIFVKIPYPIRKRFLRSFFFMRRLRRLI 76 (177)
T ss_dssp -EEECC---TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST--EEEE---TT-SSTSS--HHHHHHHHHHHHH
T ss_pred CEEEEec--CCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh--ccceeeeeecccccccchhHHHHHHHHHHH
Confidence 3445443 467899999999999999999999999987765433322 111111111122223333445567888899
Q ss_pred HhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcc-cccccccccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 201 ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV-YIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 201 ~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
++.+||+||+|........... .. ++|++++.|+.+.. .................++.+++.+|.++++|+..++.
T Consensus 77 ~~~~~DiVh~~~~~~~~~~~~~-~~--~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~ 153 (177)
T PF13439_consen 77 KKEKPDIVHIHGPPAFWIALLA-CR--KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDE 153 (177)
T ss_dssp HHHT-SEEECCTTHCCCHHHHH-HH--CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHH
T ss_pred HHcCCCeEEecccchhHHHHHh-cc--CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHH
Confidence 9999999999986544333222 22 99999999996631 01111111122222334555688999999999999999
Q ss_pred HHHhcccCCCcEEEeecCCCCCCC
Q 009759 280 LEAARVTAANKIRIWKKGVDSESF 303 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~ 303 (526)
+.+ ++.+..++.+|+||+|.+.|
T Consensus 154 l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 154 LIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HHH-HT--SS-EEE----B-CCCH
T ss_pred HHH-hCCcccCCEEEECCccHHHc
Confidence 999 66678999999999999876
No 99
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.67 E-value=3.6e-15 Score=153.19 Aligned_cols=204 Identities=17% Similarity=0.144 Sum_probs=160.5
Q ss_pred HhhcCcEEEeCChhHHHHHHHhccc--CCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEe--ccccccc
Q 009759 262 LHRAADLTLVPSVAIGKDLEAARVT--AANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG--RLGVEKS 337 (526)
Q Consensus 262 ~~~~ad~ii~~S~~~~~~l~~~~~~--~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG--~l~~~Kg 337 (526)
.+..+|.+|+.++...+.+...... ...++..||.+.- ... +.. ....+..+++++ |+ +.|.
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~-~~~-----------s~r~~~~~I~v~idrL-~ek~ 334 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLR-LGQ-----------SQQLYETEIGFWIDGL-SDEE 334 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEe-cCh-----------hhcccceEEEEEcCCC-ChHH
Confidence 4567899999998877777766531 1134566675433 211 110 123344678888 99 9999
Q ss_pred HHHHHHHHHhC----CCcEEEEEeCCccH---HHHHHHhc----C-----------------------------CCeEEe
Q 009759 338 LDFLKRVMDRL----PEARIAFIGDGPYR---EELEKMFT----G-----------------------------MPAVFT 377 (526)
Q Consensus 338 ~~~li~a~~~l----~~~~l~ivG~g~~~---~~l~~l~~----~-----------------------------~~V~~~ 377 (526)
++.+++++.++ |+++|.+.|.+... +.++++++ + ..|.|.
T Consensus 335 ~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 414 (519)
T TIGR03713 335 LQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFT 414 (519)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEE
Confidence 99888877654 89999999966432 33332211 2 368999
Q ss_pred cccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHh
Q 009759 378 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 457 (526)
Q Consensus 378 g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~l 457 (526)
|+.+..++.+.|..+.++|.+|..||++ +++||+++|+|+| .-|..+++ +++.||+++ +|..+|+++|..+
T Consensus 415 gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V---~d~~NG~li--~d~~~l~~al~~~ 485 (519)
T TIGR03713 415 TLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYV---EHNKNGYII--DDISELLKALDYY 485 (519)
T ss_pred ecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceee---EcCCCcEEe--CCHHHHHHHHHHH
Confidence 9998779999999999999999999999 9999999999999 44568999 999999999 5999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 458 LYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 458 l~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
+.++..++++...+.+.+++||-+++++++.
T Consensus 486 L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~ 516 (519)
T TIGR03713 486 LDNLKNWNYSLAYSIKLIDDYSSENIIERLN 516 (519)
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999998885
No 100
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.62 E-value=2.4e-15 Score=131.68 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=94.3
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHH--HhcCCCEEEEC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEV--ARFKPDIIHAS 211 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~pDiV~~~ 211 (526)
||.+.++.+++++|.++||+|++++................+..++.+..............+.+++ ++.+||+||++
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~ 80 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAH 80 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEec
Confidence 8999999999999999999999999876544321111112222223332222333444556777777 78899999999
Q ss_pred CCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcE
Q 009759 212 SPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKI 291 (526)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki 291 (526)
++. ..+.+.++.+..++|+|+++|+...... ..+....+..+++..++.+|.++++|+..++.+.+.+ .+.+++
T Consensus 81 ~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~----~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g-~~~~ri 154 (160)
T PF13579_consen 81 SPT-AGLVAALARRRRGIPLVVTVHGTLFRRG----SRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYG-VPPDRI 154 (160)
T ss_dssp HHH-HHHHHHHHHHHHT--EEEE-SS-T----------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH----GGGE
T ss_pred ccc-hhHHHHHHHHccCCcEEEEECCCchhhc----cchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhC-CCCCcE
Confidence 953 3444455555789999999998542211 2334444567789999999999999999999999955 578999
Q ss_pred EEeecC
Q 009759 292 RIWKKG 297 (526)
Q Consensus 292 ~vi~ng 297 (526)
.+||||
T Consensus 155 ~vipnG 160 (160)
T PF13579_consen 155 HVIPNG 160 (160)
T ss_dssp EE----
T ss_pred EEeCcC
Confidence 999997
No 101
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.57 E-value=3e-13 Score=135.50 Aligned_cols=294 Identities=15% Similarity=0.136 Sum_probs=169.1
Q ss_pred CEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcc------------cccccccc-----cccchHHHHHHHHhhcCcE
Q 009759 206 DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV------------YIPRYTFS-----WLVKPMWLVIKFLHRAADL 268 (526)
Q Consensus 206 DiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~------------~~~~~~~~-----~~~~~~~~~~~~~~~~ad~ 268 (526)
=+.|+|.|.......++..+...+..|++.|..... ++..+... ........+++.+.+.||+
T Consensus 145 ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~Adv 224 (633)
T PF05693_consen 145 VIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYADV 224 (633)
T ss_dssp EEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHSSE
T ss_pred EEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhcCe
Confidence 355777764433333444445577789999973221 11111100 1111234788899999999
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHH----HHHhh------------cCCCCCCcEEEEEecc
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE----MRWRL------------SNGEPDKPLIVHVGRL 332 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~----~~~~~------------~~~~~~~~~i~~vG~l 332 (526)
+.++|+-.+.+.....+. ..=.|+|||++.+.+.....-+. .+.++ ....++...|...||.
T Consensus 225 FTTVSeITa~Ea~~LL~r--~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl~~ftsGRY 302 (633)
T PF05693_consen 225 FTTVSEITAKEAEHLLKR--KPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKTLYFFTSGRY 302 (633)
T ss_dssp EEESSHHHHHHHHHHHSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGEEEEEEESSS
T ss_pred eeehhhhHHHHHHHHhCC--CCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEeeece
Confidence 999999999998876642 22267899999987765432111 11111 1112345567778898
Q ss_pred -cccccHHHHHHHHHhCC--------C---cEEEEEeCCc----------------------------------------
Q 009759 333 -GVEKSLDFLKRVMDRLP--------E---ARIAFIGDGP---------------------------------------- 360 (526)
Q Consensus 333 -~~~Kg~~~li~a~~~l~--------~---~~l~ivG~g~---------------------------------------- 360 (526)
-..||+|.+++|+.+|. + +-|+++-...
T Consensus 303 Ef~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~ 382 (633)
T PF05693_consen 303 EFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGR 382 (633)
T ss_dssp -TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred eeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46799999999998771 2 2234432100
Q ss_pred --c------HH---HHHHHhcC------------------------------C------C--eEEec-ccCh------hh
Q 009759 361 --Y------RE---ELEKMFTG------------------------------M------P--AVFTG-MLLG------EE 384 (526)
Q Consensus 361 --~------~~---~l~~l~~~------------------------------~------~--V~~~g-~v~~------~~ 384 (526)
. .+ .++..+-. + + |.|++ +++. -+
T Consensus 383 ~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~ 462 (633)
T PF05693_consen 383 LPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLD 462 (633)
T ss_dssp S-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-
T ss_pred CCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCC
Confidence 0 00 00100000 0 1 34433 2222 36
Q ss_pred HHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccC--CCceeEee-CC--CCH----HHHHHHHH
Q 009759 385 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ--DGKIGYLF-NP--GDL----DDCLSKLE 455 (526)
Q Consensus 385 l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~--~~~~g~~~-~~--~d~----~~la~ai~ 455 (526)
..+++..||+.|+||.+|++|.+.+|+.++|+|.|+|+..|....+.+.. ....|+.+ +. .+. +++++.|.
T Consensus 463 Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~ 542 (633)
T PF05693_consen 463 YYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLY 542 (633)
T ss_dssp HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHH
T ss_pred HHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999998877664321 12345544 32 234 45555555
Q ss_pred Hhhh-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009759 456 PLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRKK 502 (526)
Q Consensus 456 ~ll~-d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~~~~~~ 502 (526)
++.. +...+..++.++.+..+..+|++....|. +-|+.++.+...+
T Consensus 543 ~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~-~Ay~~AL~~a~p~ 589 (633)
T PF05693_consen 543 KFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYE-KAYDLALRRAYPD 589 (633)
T ss_dssp HHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHH-HHHHHHHHHHSHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHhcCcc
Confidence 5555 56677777777877778999999999997 7899888876544
No 102
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.56 E-value=1.1e-13 Score=140.14 Aligned_cols=275 Identities=18% Similarity=0.229 Sum_probs=169.7
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
.-|+|++|+++.+.++.++..+..+.++.+..|..+|...--.... ....+.+ .+-.||.|-+.+...++.+...
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP----~r~eiL~-glL~aDlIgFqt~~~~~nFl~~ 215 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLP----WREEILR-GLLGADLIGFQTFEYARNFLSC 215 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHHHTTST----THHHHHH-HHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHHHhhCC----cHHHHHH-HhhcCCEEEEecHHHHHHHHHH
Confidence 5599999999999898888888889999999999887532222111 1122333 3446999999999888877532
Q ss_pred ----ccc-------------CCCcEEEeecCCCCCCCCCCcc-------cHHHHHhhcCCCCCCcEEEEEecccccccHH
Q 009759 284 ----RVT-------------AANKIRIWKKGVDSESFHPRFR-------SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 339 (526)
Q Consensus 284 ----~~~-------------~~~ki~vi~ngid~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~ 339 (526)
.+. ..-++.+.|-|||++.+..... ...++.++ ..+..+|+-+.|++..||+.
T Consensus 216 ~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~---~~~~~ii~gvDrld~~kGi~ 292 (474)
T PF00982_consen 216 CKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKF---KGKRKIIVGVDRLDYTKGIP 292 (474)
T ss_dssp HHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHT---TT-SEEEEEE--B-GGG-HH
T ss_pred HHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhc---CCCcEEEEEeccchhhcCHH
Confidence 110 0123667888998876632111 12233322 22358899999999999999
Q ss_pred HHHHHHHhC----C----CcEEEEEeC-----Cc----cHHHHHHHhcCC----------CeE-EecccChhhHHHHHHc
Q 009759 340 FLKRVMDRL----P----EARIAFIGD-----GP----YREELEKMFTGM----------PAV-FTGMLLGEELSQAYAS 391 (526)
Q Consensus 340 ~li~a~~~l----~----~~~l~ivG~-----g~----~~~~l~~l~~~~----------~V~-~~g~v~~~~l~~~~~~ 391 (526)
.=+.|++++ | ++.|+-++. .+ ..+++++++.+. .|. +.+.++.+++..+|+.
T Consensus 293 ~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~ 372 (474)
T PF00982_consen 293 EKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRA 372 (474)
T ss_dssp HHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHh
Confidence 988888766 3 466766662 11 234444444322 244 4556899999999999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCc----EEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHH
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRET 466 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~P----vI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~ 466 (526)
||+++.++..+|+.++..|+.+|... +|.|...|..+.+ +...++++|.|.+++|++|.++++ .+++++.
T Consensus 373 aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L-----~~~al~VNP~d~~~~A~ai~~AL~M~~~Er~~ 447 (474)
T PF00982_consen 373 ADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQL-----SEAALLVNPWDIEEVADAIHEALTMPPEERKE 447 (474)
T ss_dssp -SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT------TTS-EEE-TT-HHHHHHHHHHHHT--HHHHHH
T ss_pred hhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHc-----CCccEEECCCChHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999765 6778887888777 223489999999999999999999 5667777
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 009759 467 MGQAARQEMEKYDWRAATRTIRNEQ 491 (526)
Q Consensus 467 ~~~~a~~~~~~fs~~~~~~~~~~~l 491 (526)
..+..++.+..++....++.+++++
T Consensus 448 r~~~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 448 RHARLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhHhCCHHHHHHHHHHHh
Confidence 7778888889999999999998655
No 103
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.56 E-value=3.7e-12 Score=127.84 Aligned_cols=323 Identities=15% Similarity=0.088 Sum_probs=195.5
Q ss_pred chHHHHHHHHHHHHH--CCCeEE---EEEeCCCCCccccCceec-cccccCCCccccc---------cc-hhcccHHHHH
Q 009759 135 GYKNRFQNFIKYLRE--MGDEVM---VVTTHEGVPQEFYGAKLI-GSRSFPCPWYQKV---------PL-SLALSPRIIS 198 (526)
Q Consensus 135 G~~~~~~~l~~~L~~--~G~~V~---vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~-~~~~~~~l~~ 198 (526)
|-......++++|.+ .|++|. ++....+..... +... ....++...+.+. .. .......-++
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~--ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~~ 85 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLG--IPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQWR 85 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCC--CceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHHH
Confidence 344557899999998 599999 777665543221 1111 2222222222111 01 1223345566
Q ss_pred HHHhc--CCCEEEECCCchHHHHHHHHHHhcCCCEEE---EEecCCcccccccc--------cccccchHHHHHHHHhhc
Q 009759 199 EVARF--KPDIIHASSPGIMVFGALIIAKLLCVPIVM---SYHTHVPVYIPRYT--------FSWLVKPMWLVIKFLHRA 265 (526)
Q Consensus 199 ~l~~~--~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~---~~h~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 265 (526)
.++++ +||+|++.+... .+++++..++|+++ ...+..-....... .......+ -..+...+.
T Consensus 86 ~~~~~~~~p~~v~~~Gg~v----~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~n~l~~~~ 160 (396)
T TIGR03492 86 ALRKWAKKGDLIVAVGDIV----PLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERWLMRSRR 160 (396)
T ss_pred HHHHHhhcCCEEEEECcHH----HHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HHHHhhchh
Confidence 77888 999999987533 56677888999877 33332200000000 00001111 124556688
Q ss_pred CcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEE-EEEecc--cccccHHHHH
Q 009759 266 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI-VHVGRL--GVEKSLDFLK 342 (526)
Q Consensus 266 ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~vG~l--~~~Kg~~~li 342 (526)
|+.+++..+...+.+.+.+ .++.++.|.+-....... .. ++ .++.+++ ++-|+- ...+++..++
T Consensus 161 a~~v~~~~~~t~~~l~~~g----~k~~~vGnPv~d~l~~~~-~~-------~l-~~~~~~lllLpGSR~ae~~~~lp~~l 227 (396)
T TIGR03492 161 CLAVFVRDRLTARDLRRQG----VRASYLGNPMMDGLEPPE-RK-------PL-LTGRFRIALLPGSRPPEAYRNLKLLL 227 (396)
T ss_pred hCEEeCCCHHHHHHHHHCC----CeEEEeCcCHHhcCcccc-cc-------cc-CCCCCEEEEECCCCHHHHHccHHHHH
Confidence 9999999999999888754 388889988754433211 10 11 2333444 555544 2345678899
Q ss_pred HHHHhC---CCcEEEEEe-CCccHHHHHHHhcCCC------------------eEEecccChhhHHHHHHcCcEEEecCC
Q 009759 343 RVMDRL---PEARIAFIG-DGPYREELEKMFTGMP------------------AVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 343 ~a~~~l---~~~~l~ivG-~g~~~~~l~~l~~~~~------------------V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
++++.+ +++++++.- .+...+.+++...+.+ +.+..+. +++..+|+.||++|..|
T Consensus 228 ~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADlvI~rS- 304 (396)
T TIGR03492 228 RALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADLGIAMA- 304 (396)
T ss_pred HHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCEEEECc-
Confidence 998887 577776643 3444555655444221 4555554 68999999999999775
Q ss_pred CCCCcHHHHHHHHcCCcEEEeCCCCCC---ceecccCCC----ceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 009759 401 SETLGLVVLEAMSSGIPVVGVRAGGIP---DIIPEDQDG----KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 473 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~~gg~~---e~v~~~~~~----~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~ 473 (526)
|.+..|++++|+|+|.....+.. .+. +.. ..+..+...+++.+++++.++++|++.++++.+++++
T Consensus 305 ----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~---~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~~~~~~~ 377 (396)
T TIGR03492 305 ----GTATEQAVGLGKPVIQLPGKGPQFTYGFA---EAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERCRRNGQE 377 (396)
T ss_pred ----CHHHHHHHHhCCCEEEEeCCCCHHHHHHH---HhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 46669999999999998754332 112 110 2344445567899999999999999988888755554
Q ss_pred HH-HhCCHHHHHHHH
Q 009759 474 EM-EKYDWRAATRTI 487 (526)
Q Consensus 474 ~~-~~fs~~~~~~~~ 487 (526)
.+ +....+.+++.+
T Consensus 378 ~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 378 RMGPPGASARIAESI 392 (396)
T ss_pred hcCCCCHHHHHHHHH
Confidence 44 345555555444
No 104
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.56 E-value=8e-13 Score=129.94 Aligned_cols=294 Identities=15% Similarity=0.103 Sum_probs=168.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCcccc-c------c----
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQK-V------P---- 187 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~---- 187 (526)
|||++.++. .+-|+-.+...++++| +||+|++++.+....-.........+..+....... . .
T Consensus 1 MkIl~~v~~----~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (318)
T PF13528_consen 1 MKILFYVQG----HGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIR 74 (318)
T ss_pred CEEEEEeCC----CCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccccCEEEccCceEeccCCccchHHHHHHHHH
Confidence 899999874 3578999999999999 489999999875421100011111111111111000 0 0
Q ss_pred ---chhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHH--
Q 009759 188 ---LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL-- 262 (526)
Q Consensus 188 ---~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (526)
........+.+++++++||+|++..... ...+++..++|++...|..+..... ............+.+..
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~----~~~aa~~~giP~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 149 (318)
T PF13528_consen 75 WLARLARRIRREIRWLREFRPDLVISDFYPL----AALAARRAGIPVIVISNQYWFLHPN-FWLPWDQDFGRLIERYIDR 149 (318)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEEcChHH----HHHHHHhcCCCEEEEEehHHccccc-CCcchhhhHHHHHHHhhhh
Confidence 0112334556778889999999986433 3456788999999877765432111 11111111111111111
Q ss_pred --hhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHH
Q 009759 263 --HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF 340 (526)
Q Consensus 263 --~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~ 340 (526)
+..++..+..+.... . ....++.+++..+........ ..+.+.+++++|..+.. .
T Consensus 150 ~~~~~~~~~l~~~~~~~-~------~~~~~~~~~~p~~~~~~~~~~------------~~~~~~iLv~~gg~~~~----~ 206 (318)
T PF13528_consen 150 YHFPPADRRLALSFYPP-L------PPFFRVPFVGPIIRPEIRELP------------PEDEPKILVYFGGGGPG----D 206 (318)
T ss_pred ccCCcccceecCCcccc-c------cccccccccCchhcccccccC------------CCCCCEEEEEeCCCcHH----H
Confidence 233333333332200 0 001122222222222111111 12456688999987666 7
Q ss_pred HHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEE
Q 009759 341 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 420 (526)
Q Consensus 341 li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~ 420 (526)
++++++.+++.+++++|.+... ....||++.++.. +++.++|+.||++|.- +.-+++.|++++|+|+|+
T Consensus 207 ~~~~l~~~~~~~~~v~g~~~~~------~~~~ni~~~~~~~-~~~~~~m~~ad~vIs~----~G~~t~~Ea~~~g~P~l~ 275 (318)
T PF13528_consen 207 LIEALKALPDYQFIVFGPNAAD------PRPGNIHVRPFST-PDFAELMAAADLVISK----GGYTTISEALALGKPALV 275 (318)
T ss_pred HHHHHHhCCCCeEEEEcCCccc------ccCCCEEEeecCh-HHHHHHHHhCCEEEEC----CCHHHHHHHHHcCCCEEE
Confidence 7889999999999999865211 1145899888753 6899999999999933 334569999999999999
Q ss_pred eCCCCCCcee---cccCCCceeEeeC--CCCHHHHHHHHHHh
Q 009759 421 VRAGGIPDII---PEDQDGKIGYLFN--PGDLDDCLSKLEPL 457 (526)
Q Consensus 421 ~~~gg~~e~v---~~~~~~~~g~~~~--~~d~~~la~ai~~l 457 (526)
-...+..|.. ...++.+.|..++ .-+++.|+++|+++
T Consensus 276 ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 276 IPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 8876543321 0003344555544 34688888888764
No 105
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.56 E-value=3.7e-13 Score=134.40 Aligned_cols=277 Identities=16% Similarity=0.100 Sum_probs=197.9
Q ss_pred CCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhc
Q 009759 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 284 (526)
Q Consensus 205 pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~ 284 (526)
-|+|++|+++.+.++.++..+....++-+..|..+|...--....+- ..+.+ .+-.+|.|-+.+...++.+.+.-
T Consensus 124 ~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r----~eil~-glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 124 DDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPH----DELLE-QLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCCh----HHHHH-HHHhCccceeCCHHHHHHHHHHH
Confidence 48999999999888888877777889999999988754322211211 12233 34468999999988887765411
Q ss_pred ----cc------------CCCcEEEeecCCCCCCCCCCccc--HHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHH
Q 009759 285 ----VT------------AANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 346 (526)
Q Consensus 285 ----~~------------~~~ki~vi~ngid~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~ 346 (526)
+. ..-++.+.|-|||++.|...... ......+.....++.+|+-+.|++.-||+..=++|++
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~~~~lilgVDRLDytKGi~~rl~Afe 278 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYE 278 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcCCCeEEEEecccccccCHHHHHHHHH
Confidence 10 11246678899998876432111 1111111111235778999999999999999888887
Q ss_pred hC----C----CcEEEEEeCC-----c----cHHHHHHHhcCC----------CeEE-ecccChhhHHHHHHcCcEEEec
Q 009759 347 RL----P----EARIAFIGDG-----P----YREELEKMFTGM----------PAVF-TGMLLGEELSQAYASGDVFVMP 398 (526)
Q Consensus 347 ~l----~----~~~l~ivG~g-----~----~~~~l~~l~~~~----------~V~~-~g~v~~~~l~~~~~~aDv~v~p 398 (526)
.+ | ++.|+-+... + ...++++++.+. .|.+ ...++.+++..+|+.|||++++
T Consensus 279 ~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVT 358 (474)
T PRK10117 279 ALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVT 358 (474)
T ss_pred HHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEec
Confidence 75 3 4666666521 1 233444444322 1444 4567889999999999999999
Q ss_pred CCCCCCcHHHHHHHHcCC-----cEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHHHHH
Q 009759 399 SESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAAR 472 (526)
Q Consensus 399 s~~e~~~~~ilEAma~G~-----PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~~a~ 472 (526)
+..+|+.++..|+.||.. .+|.|...|..+.+ . ..++++|.|.++++++|.+.+. ..+++++..+..+
T Consensus 359 plRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L---~---~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~ 432 (474)
T PRK10117 359 PLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAALDRALTMPLAERISRHAEML 432 (474)
T ss_pred ccccccccccchheeeecCCCCccEEEecccchHHHh---C---CCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999975 37888888888877 2 3789999999999999999999 5667777777788
Q ss_pred HHHHhCCHHHHHHHHHHHHH
Q 009759 473 QEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 473 ~~~~~fs~~~~~~~~~~~ly 492 (526)
+.+..++....++.+++++-
T Consensus 433 ~~v~~~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 433 DVIVKNDINHWQECFISDLK 452 (474)
T ss_pred HHhhhCCHHHHHHHHHHHHH
Confidence 88899999999999985554
No 106
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.55 E-value=4.8e-12 Score=125.79 Aligned_cols=336 Identities=14% Similarity=0.112 Sum_probs=205.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccc----cCceeccc---cccCCCccc--c---
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEF----YGAKLIGS---RSFPCPWYQ--K--- 185 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~----~~~~~~~~---~~~~~~~~~--~--- 185 (526)
|||++|+..-|- -..+..++++|++. ++++.++.++......+ ......++ ..+...... .
T Consensus 1 ~ki~~v~GtRpe------~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (365)
T TIGR03568 1 KKICVVTGTRAD------YGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGM 74 (365)
T ss_pred CeEEEEEecChh------HHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCH
Confidence 689999765441 24578899999884 78998888764432211 11110111 111111111 0
Q ss_pred ccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhc
Q 009759 186 VPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 265 (526)
Q Consensus 186 ~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (526)
..........+.+++.+++||+|++++.....+++.+.+...++|++. +|+....+. . .-....+.+-+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~H-veaG~rs~~------~---~eE~~r~~i~~l 144 (365)
T TIGR03568 75 AKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAH-IHGGEVTEG------A---IDESIRHAITKL 144 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEE-EECCccCCC------C---chHHHHHHHHHH
Confidence 111123456788889999999999999877788888899999999883 444321110 0 011223445567
Q ss_pred CcEEEeCChhHHHHHHHhcccCCCcEEEeecC-CCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEec-----ccccccHH
Q 009759 266 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-----LGVEKSLD 339 (526)
Q Consensus 266 ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ng-id~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~-----l~~~Kg~~ 339 (526)
++..++.++..++.+.+.+. +.+++.++.|. +|.-.............++++...++.+++.+-+ ....+.+.
T Consensus 145 a~l~f~~t~~~~~~L~~eg~-~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~ 223 (365)
T TIGR03568 145 SHLHFVATEEYRQRVIQMGE-DPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIK 223 (365)
T ss_pred HhhccCCCHHHHHHHHHcCC-CCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHH
Confidence 78999999999999988775 56788887764 4432222112334555555542223443343333 22334577
Q ss_pred HHHHHHHhCC-CcEEEEEeCCc----cHHHHHHHhc-CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHH
Q 009759 340 FLKRVMDRLP-EARIAFIGDGP----YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 413 (526)
Q Consensus 340 ~li~a~~~l~-~~~l~ivG~g~----~~~~l~~l~~-~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma 413 (526)
.+++++..+. ++.++.-..++ ..+.++++.. ..++.+.+.++..++..+++.||++|--| .| .+.||.+
T Consensus 224 ~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdS----Sg-gi~EA~~ 298 (365)
T TIGR03568 224 ELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNS----SS-GIIEAPS 298 (365)
T ss_pred HHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcC----hh-HHHhhhh
Confidence 7777777663 34232211222 2344555543 34799999999999999999999999333 23 3489999
Q ss_pred cCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 009759 414 SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 488 (526)
Q Consensus 414 ~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~ 488 (526)
+|+|+|+ .+.-++.+ +.+.+++.+ ..|++++.+++.++ .++..++.+ ... ..|...+.++++.
T Consensus 299 lg~Pvv~--l~~R~e~~---~~g~nvl~v-g~~~~~I~~a~~~~-~~~~~~~~~-----~~~~~pygdg~as~rI~ 362 (365)
T TIGR03568 299 FGVPTIN--IGTRQKGR---LRADSVIDV-DPDKEEIVKAIEKL-LDPAFKKSL-----KNVKNPYGDGNSSERII 362 (365)
T ss_pred cCCCEEe--ecCCchhh---hhcCeEEEe-CCCHHHHHHHHHHH-hChHHHHHH-----hhCCCCCCCChHHHHHH
Confidence 9999995 45677777 667787767 44899999999995 454433332 111 2466666666665
No 107
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.52 E-value=3.4e-12 Score=128.25 Aligned_cols=193 Identities=12% Similarity=0.168 Sum_probs=142.9
Q ss_pred hcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHH
Q 009759 264 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 343 (526)
Q Consensus 264 ~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~ 343 (526)
.+.|.||+.++...+.+...+. +..++.++|-|+-.. + +. .......++.++ +.--++.+.+
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-~~~~~~~ip~g~i~~-~-~~------------~~r~~~~~l~~t---~s~~I~~i~~ 299 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-NEYQEQISQLGYLYP-F-KK------------DNKYRKQALILT---NSDQIEHLEE 299 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-cccCceEEEEEEEEe-e-cc------------ccCCcccEEEEC---CHHHHHHHHH
Confidence 6789999999888888887775 356778888777522 1 11 122344567776 2445666666
Q ss_pred HHHhCCCcEEEEEeCCcc-HHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 344 VMDRLPEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 344 a~~~l~~~~l~ivG~g~~-~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+++++|+++|+| |.+.. ...+.++.+-.||.....+...++.++|..||+++..+..|++++.+.||+.+|+|||+.+
T Consensus 300 Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd 378 (438)
T TIGR02919 300 IVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFE 378 (438)
T ss_pred HHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEe
Confidence 777889999999 76544 6777777444466665555556899999999999999999999999999999999999998
Q ss_pred CC-CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHH
Q 009759 423 AG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWR 481 (526)
Q Consensus 423 ~g-g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~ 481 (526)
.. |..+++ .+ |.+++.+++++++++|.+++.|++.+++.-+.-++.+..-+.+
T Consensus 379 ~t~~~~~~i---~~---g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~~~~~ 432 (438)
T TIGR02919 379 ETAHNRDFI---AS---ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQREHANDISKE 432 (438)
T ss_pred cccCCcccc---cC---CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCHH
Confidence 76 445666 33 8899999999999999999999977666544444443333333
No 108
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=9.1e-12 Score=123.81 Aligned_cols=279 Identities=17% Similarity=0.171 Sum_probs=198.7
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
.-|+|++|+++.+.++.++..+....++.+..|..+|...--.... .+.-....+-.||.|-+.++..++.+...
T Consensus 147 ~gDiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP-----~r~eIl~gll~~dligFqt~~y~~nF~~~ 221 (486)
T COG0380 147 PGDIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLP-----WREEILEGLLGADLIGFQTESYARNFLDL 221 (486)
T ss_pred CCCEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCc-----hHHHHHHHhhcCCeeEecCHHHHHHHHHH
Confidence 3499999999999888888888888899999999887532111111 11222234456999999998888766532
Q ss_pred cc-----------------cCCCcEEEeecCCCCCCCCCCccc----HHHHHhhcCCCCCCcEEEEEecccccccHHHHH
Q 009759 284 RV-----------------TAANKIRIWKKGVDSESFHPRFRS----SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLK 342 (526)
Q Consensus 284 ~~-----------------~~~~ki~vi~ngid~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li 342 (526)
-. ....++..+|-|||+..+...... ...++-......++.+|+.+.|++.-||+..=+
T Consensus 222 ~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kiivgvDRlDy~kGi~~rl 301 (486)
T COG0380 222 CSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRL 301 (486)
T ss_pred HHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEEEEehhcccccCcHHHH
Confidence 10 012456778999998877443211 112221111133478899999999999998888
Q ss_pred HHHHhC----C----CcEEEEEeCCc---------cHHHHHHHhcCC----------CeE-EecccChhhHHHHHHcCcE
Q 009759 343 RVMDRL----P----EARIAFIGDGP---------YREELEKMFTGM----------PAV-FTGMLLGEELSQAYASGDV 394 (526)
Q Consensus 343 ~a~~~l----~----~~~l~ivG~g~---------~~~~l~~l~~~~----------~V~-~~g~v~~~~l~~~~~~aDv 394 (526)
.|++++ | ++.++-++... ...+++.++.+. .|. +.-.++.+++..+|..||+
T Consensus 302 ~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv 381 (486)
T COG0380 302 LAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADV 381 (486)
T ss_pred HHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhce
Confidence 888776 3 46666666321 222333333321 244 4556888999999999999
Q ss_pred EEecCCCCCCcHHHHHHHHcC----CcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHH
Q 009759 395 FVMPSESETLGLVVLEAMSSG----IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQ 469 (526)
Q Consensus 395 ~v~ps~~e~~~~~ilEAma~G----~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~ 469 (526)
+++.+..+|+.++..|+.+|- -+.|-+...|....+ . ..+++++.|.++++++|.+.++ .++++++.-+
T Consensus 382 ~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L---~---~AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~ 455 (486)
T COG0380 382 MLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASEL---R---DALIVNPWDTKEVADAIKRALTMSLEERKERHE 455 (486)
T ss_pred eeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhh---c---cCEeECCCChHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999984 467777777766666 2 2789999999999999999999 6677777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Q 009759 470 AARQEMEKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 470 ~a~~~~~~fs~~~~~~~~~~~ly~ 493 (526)
..++.+.+++....++.+++++.+
T Consensus 456 ~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 456 KLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 788888899999999998876655
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.49 E-value=4.9e-12 Score=136.69 Aligned_cols=276 Identities=14% Similarity=0.145 Sum_probs=197.7
Q ss_pred CEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh--
Q 009759 206 DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA-- 283 (526)
Q Consensus 206 DiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~-- 283 (526)
|+|++|+++.+.++.++..+....++-+..|..+|...--.... .+.-....+-.||.|-+.+...++.+.+.
T Consensus 203 d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP-----~r~eiL~glL~aDlIGFht~~yar~Fl~~~~ 277 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLP-----IREELLRALLNSDLIGFHTFDYARHFLSCCS 277 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCC-----cHHHHHHHHhcCCeEEecCHHHHHHHHHHHH
Confidence 89999999999888888777888999999999888643222211 11222334456999999999888877651
Q ss_pred --ccc---------------CCCcEEEeecCCCCCCCCCCccc-------HHHHHhhcCCCCCCcEEEEEecccccccHH
Q 009759 284 --RVT---------------AANKIRIWKKGVDSESFHPRFRS-------SEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 339 (526)
Q Consensus 284 --~~~---------------~~~ki~vi~ngid~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~ 339 (526)
.+. ..-++.+.|-|||.+.+...... .+++.++ ...++.+|+-+.|++..||+.
T Consensus 278 r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ilgVDrlD~~KGi~ 355 (854)
T PLN02205 278 RMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQF--CDQDRIMLLGVDDMDIFKGIS 355 (854)
T ss_pred HHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHh--ccCCCEEEEEccCcccccCHH
Confidence 110 11236678899998876432221 1223222 123578899999999999999
Q ss_pred HHHHHHHhC----C----CcEEEEEeC-----CccH----HHHHHHhcCC----------CeEEe-cccChhhHHHHHHc
Q 009759 340 FLKRVMDRL----P----EARIAFIGD-----GPYR----EELEKMFTGM----------PAVFT-GMLLGEELSQAYAS 391 (526)
Q Consensus 340 ~li~a~~~l----~----~~~l~ivG~-----g~~~----~~l~~l~~~~----------~V~~~-g~v~~~~l~~~~~~ 391 (526)
.=+.|++++ | ++.|+-+.. ++.. .++.+++.+. .|+++ ..++.+++..+|+.
T Consensus 356 ~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 356 LKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 988888776 4 355665552 2222 2333333321 25554 66889999999999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCC-------------------cEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHH
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGI-------------------PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 452 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~-------------------PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ 452 (526)
|||+++.+..+|+.++..|+.+|.. .+|.|...|....+ . ..++++|.|.+++|+
T Consensus 436 ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L---~---~Ai~VNP~d~~~~a~ 509 (854)
T PLN02205 436 AECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL---S---GAIRVNPWNIDAVAD 509 (854)
T ss_pred ccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh---C---cCeEECCCCHHHHHH
Confidence 9999999999999999999999854 36677776666666 2 378999999999999
Q ss_pred HHHHhhh-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 009759 453 KLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 453 ai~~ll~-d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~ 494 (526)
+|.+.+. .+++++...+..++++..++....++.+++++.+.
T Consensus 510 ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 510 AMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERT 552 (854)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 9999999 45566666667788888999999999999777554
No 110
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.47 E-value=9.7e-12 Score=118.90 Aligned_cols=265 Identities=15% Similarity=0.097 Sum_probs=158.0
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+|.++..+ ....|+-.++..||++|+++|++|.+++......- ...+...+...+.++.... ...-...+.+.
T Consensus 1 ~i~ir~Da~~-~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~-~~~i~~~g~~v~~~~~~~~---~~~d~~~~~~~ 75 (279)
T TIGR03590 1 KILFRADASS-EIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDL-IDLLLSAGFPVYELPDESS---RYDDALELINL 75 (279)
T ss_pred CEEEEecCCc-cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH-HHHHHHcCCeEEEecCCCc---hhhhHHHHHHH
Confidence 6888888765 66678999999999999999999999997653220 0000111111111111000 01123357788
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
+++.+||+|++.++...... ....+..+. .++.+-|.... -..+|.++..+.. .+.
T Consensus 76 l~~~~~d~vV~D~y~~~~~~-~~~~k~~~~-~l~~iDD~~~~---------------------~~~~D~vin~~~~-~~~ 131 (279)
T TIGR03590 76 LEEEKFDILIVDHYGLDADW-EKLIKEFGR-KILVIDDLADR---------------------PHDCDLLLDQNLG-ADA 131 (279)
T ss_pred HHhcCCCEEEEcCCCCCHHH-HHHHHHhCC-eEEEEecCCCC---------------------CcCCCEEEeCCCC-cCH
Confidence 88889999999876433221 112223344 44445553211 0158988887765 332
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC-CCcEE-EEEe
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARI-AFIG 357 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l-~~~~l-~ivG 357 (526)
..-....+.....+ .|.+.-...+..... +.........+.+++++|..+..+....+++++..+ +++++ +++|
T Consensus 132 ~~y~~~~~~~~~~l--~G~~Y~~lr~eF~~~--~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G 207 (279)
T TIGR03590 132 SDYQGLVPANCRLL--LGPSYALLREEFYQL--ATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTG 207 (279)
T ss_pred hHhcccCcCCCeEE--ecchHHhhhHHHHHh--hHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEEC
Confidence 22111123333333 354433222211110 000000012345788999888877778888888776 35554 3567
Q ss_pred CC-ccHHHHHHHhcC-CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 358 DG-PYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 358 ~g-~~~~~l~~l~~~-~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
.+ +..+++++.... .++++++++ +++.++|+.||++|.. .|.++.|++++|+|+|+....
T Consensus 208 ~~~~~~~~l~~~~~~~~~i~~~~~~--~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 208 SSNPNLDELKKFAKEYPNIILFIDV--ENMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred CCCcCHHHHHHHHHhCCCEEEEeCH--HHHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEec
Confidence 54 456677776654 379999998 7999999999999963 468999999999999987653
No 111
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.46 E-value=3.3e-13 Score=106.20 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=84.4
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 009759 394 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 473 (526)
Q Consensus 394 v~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~ 473 (526)
+++.|+..++++.+++|+||||+|+|+.+.+++.+++ .++..++.++ |++++.++|..+++|++.++++++++++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~---~~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIF---EDGEHIITYN--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHc---CCCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999999 8888999888 9999999999999999999999999999
Q ss_pred HHH-hCCHHHHHHHHH
Q 009759 474 EME-KYDWRAATRTIR 488 (526)
Q Consensus 474 ~~~-~fs~~~~~~~~~ 488 (526)
.++ +|+|++.+++++
T Consensus 76 ~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 994 899999999886
No 112
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.44 E-value=2e-11 Score=124.10 Aligned_cols=151 Identities=17% Similarity=0.094 Sum_probs=97.5
Q ss_pred CCCcEEEEEecccc---cccHHHHHHHHHhCCCcEE-EEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEE
Q 009759 321 PDKPLIVHVGRLGV---EKSLDFLKRVMDRLPEARI-AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 396 (526)
Q Consensus 321 ~~~~~i~~vG~l~~---~Kg~~~li~a~~~l~~~~l-~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v 396 (526)
.++.+++..|+... .+....++++++.+ +.++ +.+|...... .....||.+.++++. ..+|..||++|
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-~~~~i~~~g~~~~~~----~~~~~~v~~~~~~p~---~~ll~~~d~~I 309 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL-GQRAILSLGWGGLGA----EDLPDNVRVVDFVPH---DWLLPRCAAVV 309 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc-CCeEEEEccCccccc----cCCCCceEEeCCCCH---HHHhhhhheee
Confidence 35566778888743 44567778888877 4554 4556433221 112348999999864 45688899999
Q ss_pred ecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHHHH
Q 009759 397 MPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQA 470 (526)
Q Consensus 397 ~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~~~ 470 (526)
..|..+++.||+++|+|+|+....+- .+.+ +..+.|..+... +.+++.+++.++++++ .+++..+.
T Consensus 310 ----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~---~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~ 381 (401)
T cd03784 310 ----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARV---AELGAGPALDPRELTAERLAAALRRLLDPP-SRRRAAAL 381 (401)
T ss_pred ----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH---HHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 44456899999999999999876542 2333 344567666544 7899999999999753 44444444
Q ss_pred HHHHHHhCCHHHHHHHH
Q 009759 471 ARQEMEKYDWRAATRTI 487 (526)
Q Consensus 471 a~~~~~~fs~~~~~~~~ 487 (526)
+++..+.-..+..++.+
T Consensus 382 ~~~~~~~~g~~~~~~~i 398 (401)
T cd03784 382 LRRIREEDGVPSAADVI 398 (401)
T ss_pred HHHHHhccCHHHHHHHH
Confidence 44332334444444433
No 113
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=5.4e-10 Score=107.77 Aligned_cols=311 Identities=16% Similarity=0.204 Sum_probs=197.8
Q ss_pred chHHHHHHHHHHHHHC--CCeEEEEEeCCCCCc---cccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEE
Q 009759 135 GYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIH 209 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~ 209 (526)
|-...+..|+++|++. +..+.+-+..+...+ ...+.. +...+.| +.....+.++++..+||+++
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~---v~h~YlP--------~D~~~~v~rFl~~~~P~l~I 128 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDS---VIHQYLP--------LDLPIAVRRFLRKWRPKLLI 128 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCC---eEEEecC--------cCchHHHHHHHHhcCCCEEE
Confidence 5667889999999999 667776664432211 111111 1111222 23445788999999999988
Q ss_pred ECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCC
Q 009759 210 ASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAAN 289 (526)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ 289 (526)
+.....+.. .+.-++..++|+++..--.. ..... ..+....+.+.+++..|.|++.|+..++.+.+.|..
T Consensus 129 i~EtElWPn-li~e~~~~~~p~~LvNaRLS-----~rS~~-~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~--- 198 (419)
T COG1519 129 IMETELWPN-LINELKRRGIPLVLVNARLS-----DRSFA-RYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAK--- 198 (419)
T ss_pred EEeccccHH-HHHHHHHcCCCEEEEeeeec-----hhhhH-HHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCc---
Confidence 865433221 33456788999887432211 11111 112234677888999999999999999999999862
Q ss_pred cEEEeecCCCCCCCCCCccc---HHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHh----CCCcEEEEEeCCc-c
Q 009759 290 KIRIWKKGVDSESFHPRFRS---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR----LPEARIAFIGDGP-Y 361 (526)
Q Consensus 290 ki~vi~ngid~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~----l~~~~l~ivG~g~-~ 361 (526)
++.+..| +..+.-.+.... ...+..+ ...+++++..++ +...-+.++++... .|+..++++-.-+ -
T Consensus 199 ~v~v~GN-lKfd~~~~~~~~~~~~~~r~~l---~~~r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRHpER 272 (419)
T COG1519 199 PVVVTGN-LKFDIEPPPQLAAELAALRRQL---GGHRPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRHPER 272 (419)
T ss_pred ceEEecc-eeecCCCChhhHHHHHHHHHhc---CCCCceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCChhh
Confidence 4666665 222211111111 1233333 222788888877 33334445566544 4788888887544 3
Q ss_pred HHHHHHHhcCCC-----------------eEEecccChhhHHHHHHcCcEEEecC-CCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 362 REELEKMFTGMP-----------------AVFTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 362 ~~~l~~l~~~~~-----------------V~~~g~v~~~~l~~~~~~aDv~v~ps-~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
.+.++++++..+ |.+...+ -|+..+|..+|+.++-- ...-.|-.++|+.++|+|||....
T Consensus 273 f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~ 350 (419)
T COG1519 273 FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPY 350 (419)
T ss_pred HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCc
Confidence 355666665443 3333333 48999999999988764 445567789999999999998754
Q ss_pred C-CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 009759 424 G-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 476 (526)
Q Consensus 424 g-g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~ 476 (526)
- ...|+.......+.|+.++ |.+.+++++..++.|++.++++++++...++
T Consensus 351 ~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 351 TFNFSDIAERLLQAGAGLQVE--DADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred cccHHHHHHHHHhcCCeEEEC--CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2 3344332224556677777 6888999999998899999999999998884
No 114
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.38 E-value=1.1e-10 Score=112.79 Aligned_cols=295 Identities=18% Similarity=0.236 Sum_probs=179.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc---cCceeccccccCCCccccccchhcccHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF---YGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
|||.+-..+. .......++++.|.++||+|.+.+.+.+...+. .++....+.........+.........+
T Consensus 1 MkIwiDi~~p------~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~ 74 (335)
T PF04007_consen 1 MKIWIDITHP------AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYK 74 (335)
T ss_pred CeEEEECCCc------hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHH
Confidence 8897776542 245778999999999999999999877543222 2332222222222223333333444567
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChh
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 275 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~ 275 (526)
+.+++++++||++++..... +...+...|+|.|....+..... ..+..+..+|.++++.-.
T Consensus 75 l~~~~~~~~pDv~is~~s~~----a~~va~~lgiP~I~f~D~e~a~~---------------~~~Lt~Pla~~i~~P~~~ 135 (335)
T PF04007_consen 75 LLKLIKKFKPDVAISFGSPE----AARVAFGLGIPSIVFNDTEHAIA---------------QNRLTLPLADVIITPEAI 135 (335)
T ss_pred HHHHHHhhCCCEEEecCcHH----HHHHHHHhCCCeEEEecCchhhc---------------cceeehhcCCeeECCccc
Confidence 88888899999999876432 34467889999998776633211 133456789999998876
Q ss_pred HHHHHHHhcccCCCcEEEeecCCCCCCC-CCCcccHHHHHhhcCCCCCCcEEEEEecc--cccc---c-HHHHHHHHHhC
Q 009759 276 IGKDLEAARVTAANKIRIWKKGVDSESF-HPRFRSSEMRWRLSNGEPDKPLIVHVGRL--GVEK---S-LDFLKRVMDRL 348 (526)
Q Consensus 276 ~~~~l~~~~~~~~~ki~vi~ngid~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~vG~l--~~~K---g-~~~li~a~~~l 348 (526)
-...+.+.+. . +++. -.+|++.-.+ ++-..+.....+++. .+++.+++=...+ ...+ + +..+++.+++.
T Consensus 136 ~~~~~~~~G~-~-~~i~-~y~G~~E~ayl~~F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~ 211 (335)
T PF04007_consen 136 PKEFLKRFGA-K-NQIR-TYNGYKELAYLHPFKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKY 211 (335)
T ss_pred CHHHHHhcCC-c-CCEE-EECCeeeEEeecCCCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhh
Confidence 6666666653 1 2332 2677765433 333344666777764 3344333311111 1111 1 34445555444
Q ss_pred CCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC---C
Q 009759 349 PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG---G 425 (526)
Q Consensus 349 ~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g---g 425 (526)
.+. ++++.......+ +.++.++.+.... -+..+++..||++| .+.|....||...|+|.|.+-.| +
T Consensus 212 ~~~-vV~ipr~~~~~~---~~~~~~~~i~~~~--vd~~~Ll~~a~l~I-----g~ggTMa~EAA~LGtPaIs~~~g~~~~ 280 (335)
T PF04007_consen 212 GRN-VVIIPRYEDQRE---LFEKYGVIIPPEP--VDGLDLLYYADLVI-----GGGGTMAREAALLGTPAISCFPGKLLA 280 (335)
T ss_pred Cce-EEEecCCcchhh---HHhccCccccCCC--CCHHHHHHhcCEEE-----eCCcHHHHHHHHhCCCEEEecCCcchh
Confidence 334 666664433322 2334444443321 26668999999999 55578899999999999987544 3
Q ss_pred CCceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 426 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 426 ~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
+.+++ -+.|+++...|++++.+.+....
T Consensus 281 vd~~L-----~~~Gll~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 281 VDKYL-----IEKGLLYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHH-----HHCCCeEecCCHHHHHHHHHHhh
Confidence 33444 24578888889999998665544
No 115
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.34 E-value=2.2e-10 Score=112.46 Aligned_cols=292 Identities=14% Similarity=0.181 Sum_probs=154.8
Q ss_pred EEEEEeccCCCCccC-chHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc---Cceec-cccccCCCccc-c--ccch--
Q 009759 120 RIALFVEPSPFSYVS-GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY---GAKLI-GSRSFPCPWYQ-K--VPLS-- 189 (526)
Q Consensus 120 kIliv~~~~p~~~~g-G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~---~~~~~-~~~~~~~~~~~-~--~~~~-- 189 (526)
||++... ..| |+..+...++++|++ ||+|.+++.... ..+. +.... ........... . ....
T Consensus 1 ril~~~~-----g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~ 72 (321)
T TIGR00661 1 KILYSVC-----GEGFGHTTRSVAIGEALKN-DYEVSYIASGRS--KNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLR 72 (321)
T ss_pred CEEEEEe-----ccCccHHHHHHHHHHHHhC-CCeEEEEEcCCH--HHhhhhhcCcceeccCCceEeecCCcCcHHHHHH
Confidence 4666543 236 999999999999999 999999976541 1110 11100 00000000000 0 0000
Q ss_pred ------hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHh
Q 009759 190 ------LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH 263 (526)
Q Consensus 190 ------~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (526)
........+++++++||+|++..... +.++++..++|++...|.....+ +.. ..............+.
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~----~~~aA~~~~iP~i~i~~q~~~~~-~~~-~~~~~~~~~~~~~~~~ 146 (321)
T TIGR00661 73 NKEYSPKKAIRREINIIREYNPDLIISDFEYS----TVVAAKLLKIPVICISNQNYTRY-PLK-TDLIVYPTMAALRIFN 146 (321)
T ss_pred hhccccHHHHHHHHHHHHhcCCCEEEECCchH----HHHHHHhcCCCEEEEecchhhcC-Ccc-cchhHHHHHHHHHHhc
Confidence 11333556788899999999986433 35578889999997666432111 110 0111111112222333
Q ss_pred hcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCC-CCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHH
Q 009759 264 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFH-PRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLK 342 (526)
Q Consensus 264 ~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li 342 (526)
..++.++........ .+ .|..+. ... +. ....... . ....+..++++.|. .+...++
T Consensus 147 ~~~~~~~~~~~~~~~-----~~--------~p~~~~--~~~~~~-~~~~~~~-~-~~~~~~~iLv~~g~----~~~~~l~ 204 (321)
T TIGR00661 147 ERCERFIVPDYPFPY-----TI--------CPKIIK--NMEGPL-IRYDVDD-V-DNYGEDYILVYIGF----EYRYKIL 204 (321)
T ss_pred cccceEeeecCCCCC-----CC--------Cccccc--cCCCcc-cchhhhc-c-ccCCCCcEEEECCc----CCHHHHH
Confidence 334444332211000 00 010000 000 11 0000000 0 01223445566544 3456778
Q ss_pred HHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 343 RVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 343 ~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+++++++++.+++.+.....+ .+ ..|+.+.++.+ +++.++|..||++|.-+ ...++.||+++|+|+|...
T Consensus 205 ~~l~~~~~~~~i~~~~~~~~~---~~--~~~v~~~~~~~-~~~~~~l~~ad~vI~~~----G~~t~~Ea~~~g~P~l~ip 274 (321)
T TIGR00661 205 ELLGKIANVKFVCYSYEVAKN---SY--NENVEIRRITT-DNFKELIKNAELVITHG----GFSLISEALSLGKPLIVIP 274 (321)
T ss_pred HHHHhCCCeEEEEeCCCCCcc---cc--CCCEEEEECCh-HHHHHHHHhCCEEEECC----ChHHHHHHHHcCCCEEEEc
Confidence 888888876665543221111 11 23799999876 68999999999999543 3457999999999999988
Q ss_pred CCCCCc------eecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 423 AGGIPD------IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 423 ~gg~~e------~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
..+..| .+ ++.+.|..++..+. ++.+++...+.++
T Consensus 275 ~~~~~eQ~~na~~l---~~~g~~~~l~~~~~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 275 DLGQFEQGNNAVKL---EDLGCGIALEYKEL-RLLEAILDIRNMK 315 (321)
T ss_pred CCCcccHHHHHHHH---HHCCCEEEcChhhH-HHHHHHHhccccc
Confidence 765433 23 45566777776666 5555555555443
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=1e-09 Score=104.99 Aligned_cols=345 Identities=16% Similarity=0.169 Sum_probs=210.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEEeCCCCCcccc--Cceeccc--cccCCCcc----cccc
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVTTHEGVPQEFY--GAKLIGS--RSFPCPWY----QKVP 187 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~--~~~~~~~--~~~~~~~~----~~~~ 187 (526)
.+|||++|...-|- -.-+..+++++.+.+ .+..++.++.....+.. ..+..++ +.+.+... ....
T Consensus 2 ~~~Kv~~I~GTRPE------~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~ 75 (383)
T COG0381 2 KMLKVLTIFGTRPE------AIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGE 75 (383)
T ss_pred CceEEEEEEecCHH------HHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHH
Confidence 35899999765442 256788999999987 77777776544321110 0011111 11111111 0011
Q ss_pred chhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCc
Q 009759 188 LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 267 (526)
Q Consensus 188 ~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 267 (526)
..-.....+.+++.+.+||+|.+|+.....+++.+++...++|+....-+..... .. + .-....+..-..+|
T Consensus 76 ~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~---~~--~---PEE~NR~l~~~~S~ 147 (383)
T COG0381 76 ITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGD---LY--F---PEEINRRLTSHLSD 147 (383)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCC---CC--C---cHHHHHHHHHHhhh
Confidence 1123445778888999999999999888888878889999999875444422110 00 0 01112344566789
Q ss_pred EEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCC---CcccHHHHHhhcCCCCCC-cEEEEEecc-cccccHHHHH
Q 009759 268 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP---RFRSSEMRWRLSNGEPDK-PLIVHVGRL-GVEKSLDFLK 342 (526)
Q Consensus 268 ~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~---~~~~~~~~~~~~~~~~~~-~~i~~vG~l-~~~Kg~~~li 342 (526)
.-+++++..++.+.+.+. +.+++.++.|.+-...... ..........+ +...++ .+++..=|- ...+++..++
T Consensus 148 ~hfapte~ar~nLl~EG~-~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~-~~~~~~~~iLvT~HRreN~~~~~~~i~ 225 (383)
T COG0381 148 LHFAPTEIARKNLLREGV-PEKRIFVTGNTVIDALLNTRDRVLEDSKILAKG-LDDKDKKYILVTAHRRENVGEPLEEIC 225 (383)
T ss_pred hhcCChHHHHHHHHHcCC-CccceEEeCChHHHHHHHHHhhhccchhhHHhh-hccccCcEEEEEcchhhcccccHHHHH
Confidence 999999999999999886 6778999998753221111 11111122111 223333 344444343 2237777777
Q ss_pred HHHHhC----CCcEEEEEeCC-c-cHHHH-HHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcC
Q 009759 343 RVMDRL----PEARIAFIGDG-P-YREEL-EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 415 (526)
Q Consensus 343 ~a~~~l----~~~~l~ivG~g-~-~~~~l-~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G 415 (526)
+++.++ +++.++.--.. + .++.. +.+....+|+++..+...++..+++.|-+++--| |...=||-..|
T Consensus 226 ~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg 300 (383)
T COG0381 226 EALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLG 300 (383)
T ss_pred HHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcC
Confidence 766554 56666654422 1 12222 2232334799999999999999999998887333 67889999999
Q ss_pred CcEEEeCCC-CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 009759 416 IPVVGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 487 (526)
Q Consensus 416 ~PvI~~~~g-g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~ 487 (526)
+||++-..+ .-+|.+ +.| .-.++. .+.+.+.+++..++++++.+++|+...--+-.-.+.+++++-+
T Consensus 301 ~Pvl~lR~~TERPE~v---~ag-t~~lvg-~~~~~i~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l 368 (383)
T COG0381 301 KPVLVLRDTTERPEGV---EAG-TNILVG-TDEENILDAATELLEDEEFYERMSNAKNPYGDGNASERIVEIL 368 (383)
T ss_pred CcEEeeccCCCCccce---ecC-ceEEeC-ccHHHHHHHHHHHhhChHHHHHHhcccCCCcCcchHHHHHHHH
Confidence 999987554 556666 333 333443 3789999999999999999888865443333222444444433
No 117
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.33 E-value=3.6e-10 Score=107.10 Aligned_cols=337 Identities=14% Similarity=0.114 Sum_probs=212.9
Q ss_pred CCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEE
Q 009759 130 FSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIH 209 (526)
Q Consensus 130 ~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~ 209 (526)
....+|.......+.++|...||+|+++-.+............-. ...........-......++.+++|+|+
T Consensus 10 ~~y~~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k~rd~~~~~-------~~~~~~~~~~~e~~~~~~i~~fk~d~iv 82 (373)
T COG4641 10 SDYNNGSAEYYRGLLRALKMDGMKVLFLESGDFWDYKNRDIDAED-------GCTEAFYKDQPELESLLYIREFKPDIIV 82 (373)
T ss_pred hhhcCCchhhHHHHHHHHHhccceEEEEecccHHhhhcccccCcc-------chhheeecCcHHHHHHHHHHhcCCcEEE
Confidence 355678888889999999999999999987654322211110000 0000000011112445567889999998
Q ss_pred ECCCc-----hHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhH-HHHHHHh
Q 009759 210 ASSPG-----IMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI-GKDLEAA 283 (526)
Q Consensus 210 ~~~~~-----~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~-~~~l~~~ 283 (526)
..... ......+...+..++|+++..-+.. ........ +. -..+.+..+-..|.|++.+... +..+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~a~l~~~~l~~~~w~te~p-~~~~~~~~-~~---~~~~~~~~l~~fd~v~~~g~~l~~~~yyq~ 157 (373)
T COG4641 83 NMSGDDQPDEESTIDLWAWLKRKCLPVIVWYTEDP-YDTDIFSQ-VA---EEQLARRPLFIFDNVLSFGGGLVANKYYQE 157 (373)
T ss_pred EecccccccceehHHHHHHhhcCCcceEEEEeccc-hhhhhhhh-hh---HHHhhccccchhhhhhhccchHHHHHHHHh
Confidence 86543 2222233445667788666554422 11111100 00 0011111222344466666666 5555544
Q ss_pred cccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHH----HhCC-CcEEEEEeC
Q 009759 284 RVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVM----DRLP-EARIAFIGD 358 (526)
Q Consensus 284 ~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~----~~l~-~~~l~ivG~ 358 (526)
++ ..++..++.++|.+.+.+.... ..-.-.+.++|+..+. ..+.+-+.+ .++. +-++.+.|.
T Consensus 158 ~~--~~~~~~~~~a~d~~~~~~i~~d----------a~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~v~rr~~~~g~ 224 (373)
T COG4641 158 GG--ARNCYYLPWAVDDSLFHPIPPD----------ASYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLMVDRRFYVLGP 224 (373)
T ss_pred hc--ccceeccCccCCchhcccCCcc----------ccceeeeEEecCCCcc-HHHHHHHHhhccchhhhccceeeecCC
Confidence 43 3688899999999999876422 1223368889987555 233333333 2222 356777776
Q ss_pred CccHHHHHHHhcCCCeEEecccCh-hhHHHHHHcCcEEEecCCC---CC---CcHHHHHHHHcCCcEEEeCCCCCCceec
Q 009759 359 GPYREELEKMFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSES---ET---LGLVVLEAMSSGIPVVGVRAGGIPDIIP 431 (526)
Q Consensus 359 g~~~~~l~~l~~~~~V~~~g~v~~-~~l~~~~~~aDv~v~ps~~---e~---~~~~ilEAma~G~PvI~~~~gg~~e~v~ 431 (526)
. +...+....-..++.+.|+++. +.+...++..|+.+.-++. ++ ..+.+.|+++||.+.|+....++.-++
T Consensus 225 ~-y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f- 302 (373)
T COG4641 225 R-YPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFF- 302 (373)
T ss_pred c-cchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhc-
Confidence 4 2233322222347888898877 7888999999999876552 22 378999999999999999988888888
Q ss_pred ccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHH
Q 009759 432 EDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWF 498 (526)
Q Consensus 432 ~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l~~ 498 (526)
.+|+.-++.. |..++.+.+.+++..++.++++++.+.+.+ ..|+.++-+.+++ +...++..+
T Consensus 303 --~pgk~~iv~~--d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~-~~i~sI~~r 365 (373)
T COG4641 303 --KPGKDIIVYQ--DSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLL-NEIASINIR 365 (373)
T ss_pred --CCchheEEec--CHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHH-HHHHHHHHh
Confidence 7777766666 999999999999999999999999999998 4799999998887 344444443
No 118
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.32 E-value=3.3e-10 Score=110.90 Aligned_cols=309 Identities=17% Similarity=0.163 Sum_probs=186.0
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce-eccccccCCC----ccccccchhcccHHHHHHHHhcCCCEEE
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK-LIGSRSFPCP----WYQKVPLSLALSPRIISEVARFKPDIIH 209 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~pDiV~ 209 (526)
.+..+...|+++|++++-++.++.-+...... .|.+ ......+..- ...+++........+.+.+.+.+||+++
T Consensus 9 SGD~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~-~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vI 87 (373)
T PF02684_consen 9 SGDLHGARLIRALKARDPDIEFYGVGGPRMQA-AGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVI 87 (373)
T ss_pred cHHHHHHHHHHHHHhhCCCcEEEEEechHHHh-CCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 34677899999999999899998876543322 1111 1111111111 1223334445556777788889999999
Q ss_pred ECCCchHHHHHHHHHHhcCCC--EEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccC
Q 009759 210 ASSPGIMVFGALIIAKLLCVP--IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTA 287 (526)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~p--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~ 287 (526)
.-+...+.+......+..+++ +++++-- .- +.|.. ...+.+-+.+|.+++.=+...+.+.+.+.
T Consensus 88 lID~pgFNlrlak~lk~~~~~~~viyYI~P---qv-----WAWr~----~R~~~i~~~~D~ll~ifPFE~~~y~~~g~-- 153 (373)
T PF02684_consen 88 LIDYPGFNLRLAKKLKKRGIPIKVIYYISP---QV-----WAWRP----GRAKKIKKYVDHLLVIFPFEPEFYKKHGV-- 153 (373)
T ss_pred EeCCCCccHHHHHHHHHhCCCceEEEEECC---ce-----eeeCc----cHHHHHHHHHhheeECCcccHHHHhccCC--
Confidence 987655544444455666776 6655432 11 11111 22455677899999999999999998863
Q ss_pred CCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecc-cc-cccHHHHHHHHHhC----CCcEEEEEeCCcc
Q 009759 288 ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GV-EKSLDFLKRVMDRL----PEARIAFIGDGPY 361 (526)
Q Consensus 288 ~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l-~~-~Kg~~~li~a~~~l----~~~~l~ivG~g~~ 361 (526)
++..+.|++-.. ..+.......+..+ +..++..+.+..|+= .. .+.+..++++++.+ |++++++......
T Consensus 154 --~~~~VGHPl~d~-~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~ 229 (373)
T PF02684_consen 154 --PVTYVGHPLLDE-VKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV 229 (373)
T ss_pred --CeEEECCcchhh-hccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH
Confidence 677777775332 22332334444444 433344455666743 22 34567777877665 7899988775443
Q ss_pred HHH-HHHHhcCC--CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe-CCCC------------
Q 009759 362 REE-LEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGG------------ 425 (526)
Q Consensus 362 ~~~-l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~-~~gg------------ 425 (526)
.+. +++..... ++.+.- ...+-.+.|+.||+.+..| |++.+|++.+|+|.|+. ..+.
T Consensus 230 ~~~~i~~~~~~~~~~~~~~~--~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~ 302 (373)
T PF02684_consen 230 HEELIEEILAEYPPDVSIVI--IEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV 302 (373)
T ss_pred HHHHHHHHHHhhCCCCeEEE--cCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC
Confidence 333 44443332 233221 2256788999999999776 89999999999998754 3332
Q ss_pred ----CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 009759 426 ----IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQA 470 (526)
Q Consensus 426 ----~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~ 470 (526)
+..++-. +.-..-++-+..+++.+++++..++.|++.++...+.
T Consensus 303 ~~isL~Niia~-~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~ 350 (373)
T PF02684_consen 303 KYISLPNIIAG-REVVPELIQEDATPENIAAELLELLENPEKRKKQKEL 350 (373)
T ss_pred CEeechhhhcC-CCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2222200 0001112334458999999999999998764444333
No 119
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=7.7e-10 Score=105.62 Aligned_cols=324 Identities=16% Similarity=0.138 Sum_probs=194.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce-eccccccCCC----ccccccchhccc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK-LIGSRSFPCP----WYQKVPLSLALS 193 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~ 193 (526)
|||++++.. -.+......|+++|+++=-+|.++.-+....... +.+ ......+..- ....++..+...
T Consensus 2 ~ki~i~AGE------~SGDllGa~LikaLk~~~~~~efvGvgG~~m~ae-G~~sl~~~~elsvmGf~EVL~~lp~llk~~ 74 (381)
T COG0763 2 LKIALSAGE------ASGDLLGAGLIKALKARYPDVEFVGVGGEKMEAE-GLESLFDMEELSVMGFVEVLGRLPRLLKIR 74 (381)
T ss_pred ceEEEEecc------cchhhHHHHHHHHHHhhCCCeEEEEeccHHHHhc-cCccccCHHHHHHhhHHHHHHHHHHHHHHH
Confidence 688888643 1234667789999998844899988765432211 110 0000001000 111222233344
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcC--CCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC--VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~--~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
+.+.+.+...+||++++-+...+.+......++.+ +|+|+++-- .-+ .| +. .....+.+.+|++++
T Consensus 75 ~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~P---sVW-----AW--r~--~Ra~~i~~~~D~lLa 142 (381)
T COG0763 75 RELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSP---SVW-----AW--RP--KRAVKIAKYVDHLLA 142 (381)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECc---cee-----ee--ch--hhHHHHHHHhhHeee
Confidence 45556666789999998775444443333344444 888865532 111 11 11 114556788999999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccc--ccccHHHHHHHHHhC-
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG--VEKSLDFLKRVMDRL- 348 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~--~~Kg~~~li~a~~~l- 348 (526)
.=+...+.+.+.+. .++.+.+..-.+.. ...+++..+.+++...+.+.+.+..|+-. -.+.+..+.+++..+
T Consensus 143 ilPFE~~~y~k~g~----~~~yVGHpl~d~i~-~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~ 217 (381)
T COG0763 143 ILPFEPAFYDKFGL----PCTYVGHPLADEIP-LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELK 217 (381)
T ss_pred ecCCCHHHHHhcCC----CeEEeCChhhhhcc-ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 36667666533321 23345668888887666677777888542 234566777777655
Q ss_pred ---CCcEEEEEeCCccHHHHHHHhcCCCe-EEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe-CC
Q 009759 349 ---PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RA 423 (526)
Q Consensus 349 ---~~~~l~ivG~g~~~~~l~~l~~~~~V-~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~-~~ 423 (526)
|+.+|++--.....+.+.....+.++ ...-.+.+.+-.+.|.+||+.+..| |++.+|++.+|+|.|++ .+
T Consensus 218 ~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~ 292 (381)
T COG0763 218 ARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKV 292 (381)
T ss_pred hhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEec
Confidence 78999997765543333333322222 1233344467889999999999766 89999999999998865 33
Q ss_pred CC----------------CCceecccCCC--ceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 009759 424 GG----------------IPDIIPEDQDG--KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE 474 (526)
Q Consensus 424 gg----------------~~e~v~~~~~~--~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~ 474 (526)
.. ++.++ -+. ..-++-+.-.++.+++++..++.|...++++.+..++.
T Consensus 293 ~~it~~iak~lvk~~yisLpNIi---~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l 358 (381)
T COG0763 293 KPITYFIAKRLVKLPYVSLPNIL---AGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFREL 358 (381)
T ss_pred cHHHHHHHHHhccCCcccchHHh---cCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence 22 22222 100 00111123368999999999999986666665554444
No 120
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.26 E-value=1.3e-09 Score=111.03 Aligned_cols=324 Identities=11% Similarity=0.056 Sum_probs=194.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce-eccccccCCC----ccccccchhccc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK-LIGSRSFPCP----WYQKVPLSLALS 193 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~ 193 (526)
.||.+++.. -.+..+...|+++|+++.-++.+..-+...... .|.+ ......+..- ....++......
T Consensus 227 ~kIfI~AGE------~SGDlhgA~Li~aLk~~~P~i~~~GvGG~~M~a-aG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~ 299 (608)
T PRK01021 227 TSCFISAGE------HSGDTLGGNLLKEIKALYPDIHCFGVGGPQMRA-EGFHPLFNMEEFQVSGFWEVLLALFKLWYRY 299 (608)
T ss_pred CeEEEEecc------ccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHh-CcCcccCChHHhhhhhHHHHHHHHHHHHHHH
Confidence 388777542 134567789999999998889888876543221 1111 1111111110 112223334455
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCC--CEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV--PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~--p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
..+.+.+++.+||++++-+...+.+.....+++.|+ |+++++-- .-+ .|.. ...+.+-+.+|.+++
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsP---qVW-----AWR~----~Rikki~k~vD~ll~ 367 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCP---SIW-----AWRP----KRKTILEKYLDLLLL 367 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc---cce-----eeCc----chHHHHHHHhhhhee
Confidence 667777888899999997754444444445566675 88765532 111 1111 124566788999999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecc-cc-cccHHHHHHHHH--h
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GV-EKSLDFLKRVMD--R 347 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l-~~-~Kg~~~li~a~~--~ 347 (526)
.=+.+.+.+++.+. ++..+.|+.-.. ........+.+.+++...+++.+.+..|+= .+ .+.+..++++++ .
T Consensus 368 IfPFE~~~y~~~gv----~v~yVGHPL~d~-i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 368 ILPFEQNLFKDSPL----RTVYLGHPLVET-ISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred cCccCHHHHHhcCC----CeEEECCcHHhh-cccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998653 677777776332 222234455677776633444455677753 22 356788899988 6
Q ss_pred C-CCcEEEEEeCCc-cHHHHHHHhcCCC---eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe-
Q 009759 348 L-PEARIAFIGDGP-YREELEKMFTGMP---AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV- 421 (526)
Q Consensus 348 l-~~~~l~ivG~g~-~~~~l~~l~~~~~---V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~- 421 (526)
+ ++.++++....+ ..+.+++..++.+ +.+. +.++-.++|++||+.+..| |.+.+|++.+|+|.|+.
T Consensus 443 l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii---~~~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~Y 514 (608)
T PRK01021 443 LASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIV---PSQFRYELMRECDCALAKC-----GTIVLETALNQTPTIVTC 514 (608)
T ss_pred hccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEe---cCcchHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEE
Confidence 6 567887754333 3455666554322 3332 1123479999999999776 89999999999998763
Q ss_pred CCCCC------------------CceecccCCCceeEe--eCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 009759 422 RAGGI------------------PDIIPEDQDGKIGYL--FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 476 (526)
Q Consensus 422 ~~gg~------------------~e~v~~~~~~~~g~~--~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~ 476 (526)
..+.+ ..++-. +.-..-++ -+..+++.+++++ +++.|++.++++.+...+..+
T Consensus 515 K~s~Lty~Iak~Lvki~i~yIsLpNIIag-r~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 515 QLRPFDTFLAKYIFKIILPAYSLPNIILG-STIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQ 587 (608)
T ss_pred ecCHHHHHHHHHHHhccCCeeehhHHhcC-CCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 33321 111100 00011122 1345899999996 888888877777665555443
No 121
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.23 E-value=2.4e-09 Score=108.41 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=100.0
Q ss_pred CCcEEEEEecccccc--cHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecC
Q 009759 322 DKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 399 (526)
Q Consensus 322 ~~~~i~~vG~l~~~K--g~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps 399 (526)
...+++..|+..... -++.+++++..++...++..|.+...+.+... ..+|.+.+++++. ++|..||++|..+
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~--~~~v~~~~~~p~~---~ll~~~~~~I~hg 299 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGEL--PPNVEVRQWVPQL---EILKKADAFITHG 299 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccC--CCCeEEeCCCCHH---HHHhhCCEEEECC
Confidence 344567778763332 35556677776643334456655443333322 2479999999753 6789999999533
Q ss_pred CCCCCcHHHHHHHHcCCcEEEeCCCCCCc----eecccCCCceeEeeCC--CCHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 009759 400 ESETLGLVVLEAMSSGIPVVGVRAGGIPD----IIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQ 473 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~~~gg~~e----~v~~~~~~~~g~~~~~--~d~~~la~ai~~ll~d~~~~~~~~~~a~~ 473 (526)
..++++||+++|+|+|+....+-.. .+ .+.+.|..+.. -++++++++|.+++.|++.++++.+-+..
T Consensus 300 ----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l---~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~ 372 (392)
T TIGR01426 300 ----GMNSTMEALFNGVPMVAVPQGADQPMTARRI---AELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAE 372 (392)
T ss_pred ----CchHHHHHHHhCCCEEecCCcccHHHHHHHH---HHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3468999999999999976654322 23 34455665553 36899999999999998876666444433
Q ss_pred HHHhCCHHHHHHHHH
Q 009759 474 EMEKYDWRAATRTIR 488 (526)
Q Consensus 474 ~~~~fs~~~~~~~~~ 488 (526)
....-..+..++.++
T Consensus 373 ~~~~~~~~~aa~~i~ 387 (392)
T TIGR01426 373 IREAGGARRAADEIE 387 (392)
T ss_pred HHHcCCHHHHHHHHH
Confidence 334456666666554
No 122
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.23 E-value=3.9e-10 Score=98.55 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=113.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC---ccccCceeccccccCCCccccccchhcccHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP---QEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.||+|+...--....||.+..+.+|+..|.++|++|+|++...... ..+.+.+...+..........+...+.....
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~ 81 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLH 81 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHH
Confidence 3799996653337899999999999999999999999999865442 2334444444332222111122222222222
Q ss_pred HHHHHHh--cCCCEEEECCCchHHHHHHHHH--HhcCCCEEEEEecCCccccccccc-ccccchHHHHHHHHhhcCcEEE
Q 009759 196 IISEVAR--FKPDIIHASSPGIMVFGALIIA--KLLCVPIVMSYHTHVPVYIPRYTF-SWLVKPMWLVIKFLHRAADLTL 270 (526)
Q Consensus 196 l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~--~~~~~p~v~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ad~ii 270 (526)
.....+. .+.|+++++......+...+.. +..|.|+++..|+.. ..+..+ ...++.++..|+.+.+.+|.+|
T Consensus 82 al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlE---WkR~KW~~~~k~~lk~~E~~avk~ad~lI 158 (185)
T PF09314_consen 82 ALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLE---WKRAKWGRPAKKYLKFSEKLAVKYADRLI 158 (185)
T ss_pred HHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcch---hhhhhcCHHHHHHHHHHHHHHHHhCCEEE
Confidence 2222332 3678999987653332223333 334679998887743 222222 2334455677888999999999
Q ss_pred eCChhHHHHHHHhcccCCCcEEEeecCCC
Q 009759 271 VPSVAIGKDLEAARVTAANKIRIWKKGVD 299 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~~~ki~vi~ngid 299 (526)
+.|+..++++.+.++ ..+..+|++|.|
T Consensus 159 aDs~~I~~y~~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 159 ADSKGIQDYIKERYG--RKKSTFIAYGAD 185 (185)
T ss_pred EcCHHHHHHHHHHcC--CCCcEEecCCCC
Confidence 999999999999985 468889999976
No 123
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=99.16 E-value=6.1e-10 Score=95.06 Aligned_cols=136 Identities=26% Similarity=0.334 Sum_probs=91.2
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCceeccccccCCCccccccchhcccHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
||+++++.. +.++.++++.|.+.||+|++++...+.... ..+..+... +.+... .........+.
T Consensus 1 KIl~i~~~~--------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~---~~~~k~--~~~~~~~~~l~ 67 (139)
T PF13477_consen 1 KILLIGNTP--------STFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRL---PSPRKS--PLNYIKYFRLR 67 (139)
T ss_pred CEEEEecCc--------HHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEe---cCCCCc--cHHHHHHHHHH
Confidence 688887742 357889999999999999999996654211 223333322 212111 22211245889
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcC-CCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLC-VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
+.+++.+||+||+|......+.+.++++..+ +|+|++.|+..- .... ...+..+.+.+.+++.+|.+++.|
T Consensus 68 k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~-~~~~----~~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 68 KIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDF-YNSS----KKKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred HHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCee-ecCC----chHHHHHHHHHHHHHhCCEEEEcC
Confidence 9999999999999998665555666677777 999999998532 1111 111134567889999999999875
No 124
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.14 E-value=3.4e-09 Score=106.53 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=102.7
Q ss_pred CCcEEEEEecccccc-cHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC
Q 009759 322 DKPLIVHVGRLGVEK-SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 322 ~~~~i~~vG~l~~~K-g~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
.+++.+..|+..... -+..+++++..+ +.++++...+ ........ ..|+...+++++.+ ++..||++|.
T Consensus 237 ~~~vyvslGt~~~~~~l~~~~~~a~~~l-~~~vi~~~~~-~~~~~~~~--p~n~~v~~~~p~~~---~l~~ad~vI~--- 306 (406)
T COG1819 237 RPIVYVSLGTVGNAVELLAIVLEALADL-DVRVIVSLGG-ARDTLVNV--PDNVIVADYVPQLE---LLPRADAVIH--- 306 (406)
T ss_pred CCeEEEEcCCcccHHHHHHHHHHHHhcC-CcEEEEeccc-cccccccC--CCceEEecCCCHHH---HhhhcCEEEe---
Confidence 445556677765442 234455666666 5666666533 22222221 33899999997554 7999999994
Q ss_pred CCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeC--CCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 009759 401 SETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRETMGQAARQE 474 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~--~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~ 474 (526)
.|.-+++.||+.+|+|+|+-..+. ..+.+ ++-..|.... .-+++.++++|.+++.|+..++...+..+..
T Consensus 307 -hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv---e~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~ 382 (406)
T COG1819 307 -HGGAGTTSEALYAGVPLVVIPDGADQPLNAERV---EELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEF 382 (406)
T ss_pred -cCCcchHHHHHHcCCCEEEecCCcchhHHHHHH---HHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455678999999999999887663 22334 5566777666 5789999999999999988777665544444
Q ss_pred HHhCCHHHHHHHHHHHHH
Q 009759 475 MEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 475 ~~~fs~~~~~~~~~~~ly 492 (526)
.+.-..+.+++.+. ++.
T Consensus 383 ~~~~g~~~~a~~le-~~~ 399 (406)
T COG1819 383 KEEDGPAKAADLLE-EFA 399 (406)
T ss_pred hhcccHHHHHHHHH-HHH
Confidence 34555555555553 443
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.13 E-value=1.3e-09 Score=107.22 Aligned_cols=276 Identities=14% Similarity=0.113 Sum_probs=153.3
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
....+.+.+.+.+||+|++++.....+++.+.+...++|++ ++|.-...+ +..... .-......+-+.++..++
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~-HieaGlRs~--d~~~g~---~de~~R~~i~~la~lhf~ 128 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVA-HIEAGLRSG--DRTEGM---PDEINRHAIDKLAHLHFA 128 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEE-EES-----S---TTSST---THHHHHHHHHHH-SEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEE-EecCCCCcc--ccCCCC---chhhhhhhhhhhhhhhcc
Confidence 34577788889999999999988888888889999999954 455431111 000011 112334556678999999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCC-CcccHHH-HHhhcCCCCCCcEEEEEecccc---cccHHHHHHHHH
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP-RFRSSEM-RWRLSNGEPDKPLIVHVGRLGV---EKSLDFLKRVMD 346 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~~vG~l~~---~Kg~~~li~a~~ 346 (526)
.++..++.+.+.+. +.++|.++.|..-...... ....... ...+.....++.+++..=+... ......+.++++
T Consensus 129 ~t~~~~~~L~~~G~-~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~ 207 (346)
T PF02350_consen 129 PTEEARERLLQEGE-PPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALK 207 (346)
T ss_dssp SSHHHHHHHHHTT---GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHH
T ss_pred CCHHHHHHHHhcCC-CCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHH
Confidence 99999999999875 6789999887542211100 0000011 1111001233444444422221 233444444444
Q ss_pred ---hCCCcEEEEEeC--CccHHHHHHHhcCC-CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEE
Q 009759 347 ---RLPEARIAFIGD--GPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 420 (526)
Q Consensus 347 ---~l~~~~l~ivG~--g~~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~ 420 (526)
+.+++.+++... ......+.+..... ++++...+++.++..+++.|+++|--| |+.+-||..+|+|+|.
T Consensus 208 ~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----sGI~eEa~~lg~P~v~ 282 (346)
T PF02350_consen 208 ALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDS-----SGIQEEAPSLGKPVVN 282 (346)
T ss_dssp HHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESS-----HHHHHHGGGGT--EEE
T ss_pred HHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcC-----ccHHHHHHHhCCeEEE
Confidence 436788888775 33444555444432 899999999999999999999999333 4444499999999998
Q ss_pred e-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 421 V-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 421 ~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
- +.|.-++.. ..+.+.+ +. .|.+++.++|.+++.+.+.+.++.. ...-|.-.+.++++.
T Consensus 283 iR~~geRqe~r---~~~~nvl-v~-~~~~~I~~ai~~~l~~~~~~~~~~~----~~npYgdG~as~rI~ 342 (346)
T PF02350_consen 283 IRDSGERQEGR---ERGSNVL-VG-TDPEAIIQAIEKALSDKDFYRKLKN----RPNPYGDGNASERIV 342 (346)
T ss_dssp CSSS-S-HHHH---HTTSEEE-ET-SSHHHHHHHHHHHHH-HHHHHHHHC----S--TT-SS-HHHHHH
T ss_pred ecCCCCCHHHH---hhcceEE-eC-CCHHHHHHHHHHHHhChHHHHhhcc----CCCCCCCCcHHHHHH
Confidence 7 445556666 5565555 55 6999999999999988554444321 111354455555554
No 126
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.11 E-value=4.5e-08 Score=101.28 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=94.7
Q ss_pred CcEEEEEecccc-----cccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHH--HcCcEE
Q 009759 323 KPLIVHVGRLGV-----EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVF 395 (526)
Q Consensus 323 ~~~i~~vG~l~~-----~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~--~~aDv~ 395 (526)
..+++..|+... .+-+..+++++++++ .++++...+.... .. ...||.+.+|+|+.+ ++ ..++++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~-~~viw~~~~~~~~--~~--~p~Nv~i~~w~Pq~~---lL~hp~v~~f 368 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLP-YNVLWKYDGEVEA--IN--LPANVLTQKWFPQRA---VLKHKNVKAF 368 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCC-CeEEEEECCCcCc--cc--CCCceEEecCCCHHH---HhcCCCCCEE
Confidence 466778888642 344788899999987 4766655432221 11 124899999998755 45 568899
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCC--CCHHHHHHHHHHhhhCHHHHHHHHH
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQ 469 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~--~d~~~la~ai~~ll~d~~~~~~~~~ 469 (526)
| ..|..+++.||+.+|+|+|+....+ ....+ +..+.|..++. -+.+++.++|.++++|+..++...+
T Consensus 369 I----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv---~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ 441 (507)
T PHA03392 369 V----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY---VELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKE 441 (507)
T ss_pred E----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH---HHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8 4555679999999999999987643 22233 34556766653 3679999999999999887666655
Q ss_pred HHHHHH
Q 009759 470 AARQEM 475 (526)
Q Consensus 470 ~a~~~~ 475 (526)
-++...
T Consensus 442 ls~~~~ 447 (507)
T PHA03392 442 LRHLIR 447 (507)
T ss_pred HHHHHH
Confidence 554443
No 127
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.08 E-value=2.5e-08 Score=91.73 Aligned_cols=300 Identities=19% Similarity=0.220 Sum_probs=183.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc---cCceeccccccC-CCccccccchhcccH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF---YGAKLIGSRSFP-CPWYQKVPLSLALSP 194 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 194 (526)
|||.|=..+.| ......++...|.++||+|.+.+...+...+. .+.....+.... .....+.........
T Consensus 1 mkVwiDI~n~~------hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~ 74 (346)
T COG1817 1 MKVWIDIGNPP------HVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVY 74 (346)
T ss_pred CeEEEEcCCcc------hhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHH
Confidence 67766544333 34678999999999999999999876643322 222222222221 111112333334445
Q ss_pred HHHHHHHhcCCCEEEE-CCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 195 RIISEVARFKPDIIHA-SSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~-~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
.+.+++.+++||+.+. |++. +...+...|+|.|+...+.... ...+..+..||.++++.
T Consensus 75 ~L~ki~~~~kpdv~i~~~s~~-----l~rvafgLg~psIi~~D~ehA~---------------~qnkl~~Pla~~ii~P~ 134 (346)
T COG1817 75 KLSKIIAEFKPDVAIGKHSPE-----LPRVAFGLGIPSIIFVDNEHAE---------------AQNKLTLPLADVIITPE 134 (346)
T ss_pred HHHHHHhhcCCceEeecCCcc-----hhhHHhhcCCceEEecCChhHH---------------HHhhcchhhhhheeccc
Confidence 7888899999999887 3332 2334567899988765543211 23566788999999999
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCC----CCCCCCcccHHHHHhhcCCCCCCcEEEEEec-----ccccccHHHHHHH
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDS----ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-----LGVEKSLDFLKRV 344 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~-----l~~~Kg~~~li~a 344 (526)
....+.+...+. .+.++ +-.||+-. ..|.| +.+.-+++++...+..+++=.-. ....++++.+.++
T Consensus 135 ~~~~~~~~~~G~-~p~~i-~~~~giae~~~v~~f~p---d~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~l 209 (346)
T COG1817 135 AIDEEELLDFGA-DPNKI-SGYNGIAELANVYGFVP---DPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDL 209 (346)
T ss_pred ccchHHHHHhCC-Cccce-ecccceeEEeecccCCC---CHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHH
Confidence 888888777765 33343 33445422 12333 45666777764444444442211 2445677778888
Q ss_pred HHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 345 MDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 345 ~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
++.+++.-.+++-... ..++..++.++.+...-. -|-.+++-.|++++ .+.|...-||...|+|.|+..-|
T Consensus 210 i~~l~k~giV~ipr~~---~~~eife~~~n~i~pk~~-vD~l~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 210 IKELKKYGIVLIPREK---EQAEIFEGYRNIIIPKKA-VDTLSLLYYATLVI-----GAGGTMAREAALLGTPAISCYPG 280 (346)
T ss_pred HHHHHhCcEEEecCch---hHHHHHhhhccccCCccc-ccHHHHHhhhheee-----cCCchHHHHHHHhCCceEEecCC
Confidence 8888776666666432 223333333322211111 24445888889988 55577788999999999998744
Q ss_pred ---CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHH
Q 009759 425 ---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 463 (526)
Q Consensus 425 ---g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~ 463 (526)
+...++ -+.|.++...|+.+..+.+.+++.++..
T Consensus 281 kll~vdk~l-----ie~G~~~~s~~~~~~~~~a~~~l~~~~~ 317 (346)
T COG1817 281 KLLAVDKYL-----IEKGLLYHSTDEIAIVEYAVRNLKYRRL 317 (346)
T ss_pred ccccccHHH-----HhcCceeecCCHHHHHHHHHHHhhchhh
Confidence 344444 3568888888888888888787776643
No 128
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.06 E-value=6.3e-10 Score=104.14 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=93.2
Q ss_pred EEEEEe-ccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc--------------C-c--------ee---
Q 009759 120 RIALFV-EPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY--------------G-A--------KL--- 172 (526)
Q Consensus 120 kIliv~-~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~--------------~-~--------~~--- 172 (526)
||++|+ +..|+...||.+.++..|+++|+++||+|.|+.+.++...... + + .+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~ 80 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGVWYEVRVYRY 80 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE----EEEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEeccccccccccccceEEEEEEE
Confidence 789994 5557789999999999999999999999999999764221110 0 0 00
Q ss_pred --ccccccC--C-------Ccc--------ccccchhcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHHh-----
Q 009759 173 --IGSRSFP--C-------PWY--------QKVPLSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAKL----- 226 (526)
Q Consensus 173 --~~~~~~~--~-------~~~--------~~~~~~~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~----- 226 (526)
.++..+- . ..+ ........+.+...+.+++ .+|||||+|+|+....+.++....
T Consensus 81 ~~~~v~v~~i~~~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~~~~~~~ 160 (245)
T PF08323_consen 81 PVDGVPVYFIDNPEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKERYQQDPF 160 (245)
T ss_dssp EETTEEEEEEESHHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHCCSS---
T ss_pred EcCCccEEEecChhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhccccccccc
Confidence 0000000 0 001 0001112234455566665 599999999998776655543322
Q ss_pred -cCCCEEEEEecCCccccc-c-----ccccccc---------chHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 227 -LCVPIVMSYHTHVPVYIP-R-----YTFSWLV---------KPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 227 -~~~p~v~~~h~~~~~~~~-~-----~~~~~~~---------~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
.++|+++++|+...+... . ....+.. .....+.+..+..||.|+++|+.+++++.+.
T Consensus 161 ~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 161 FANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQINFLKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp ---SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEEEHHHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred cccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccccccCHHHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 159999999984322111 0 0001000 0011456788899999999999999987654
No 129
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.5e-08 Score=91.82 Aligned_cols=297 Identities=13% Similarity=0.106 Sum_probs=159.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+|+++..+ ..+.|+-.+...|+++|.+.|..+.+++......-. . ++... +..... +.-.
T Consensus 1 M~V~i~~Dgg~-~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~-~--~~~~~--f~~~~~-----------~~~n 63 (318)
T COG3980 1 MKVLIRCDGGL-EIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAII-H--KVYEG--FKVLEG-----------RGNN 63 (318)
T ss_pred CcEEEEecCCc-ccCcchhhhHHHHHHHHHhcCceEEEecccchhhhh-h--hhhhh--ccceee-----------eccc
Confidence 89999999765 677889999999999999999999888765421100 0 00000 000000 1111
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
.+++.++|++++.+.....-....++...+.++++. .+..... +...|.+ +.....
T Consensus 64 ~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~f-Dd~~~~~--------------------~~d~d~i--vN~~~~- 119 (318)
T COG3980 64 LIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIF-DDENAKS--------------------FKDNDLI--VNAILN- 119 (318)
T ss_pred ccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEe-cCCCccc--------------------hhhhHhh--hhhhhc-
Confidence 677889999999887655443444454667777753 2221100 0112222 222221
Q ss_pred HHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEEE-Ee
Q 009759 279 DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF-IG 357 (526)
Q Consensus 279 ~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~i-vG 357 (526)
....++. -..+..+ .-|.+.-...+... ..+..... .+.+.+++..|.-++.-=.-.++..+.+.+ +.+.| +|
T Consensus 120 a~~~y~~-v~~k~~~-~lGp~y~~lr~eF~--~~r~~~~~-r~~r~ilI~lGGsDpk~lt~kvl~~L~~~~-~nl~iV~g 193 (318)
T COG3980 120 ANDYYGL-VPNKTRY-YLGPGYAPLRPEFY--ALREENTE-RPKRDILITLGGSDPKNLTLKVLAELEQKN-VNLHIVVG 193 (318)
T ss_pred chhhccc-cCcceEE-EecCCceeccHHHH--HhHHHHhh-cchheEEEEccCCChhhhHHHHHHHhhccC-eeEEEEec
Confidence 1122222 2234332 33444433333211 11111111 123446667776443322333444444433 55544 34
Q ss_pred C-CccHHHHHHHhcCC-CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe----CCCCCCceec
Q 009759 358 D-GPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV----RAGGIPDIIP 431 (526)
Q Consensus 358 ~-g~~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~----~~gg~~e~v~ 431 (526)
+ .+..+.+++..+.. ++.++-.. ++++++|..||+.|. .-|.++.||+..|+|.++- +.-..+..+.
T Consensus 194 s~~p~l~~l~k~~~~~~~i~~~~~~--~dma~LMke~d~aI~-----AaGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~ 266 (318)
T COG3980 194 SSNPTLKNLRKRAEKYPNINLYIDT--NDMAELMKEADLAIS-----AAGSTLYEALLLGVPSLVLPLAENQIATAKEFE 266 (318)
T ss_pred CCCcchhHHHHHHhhCCCeeeEecc--hhHHHHHHhcchhee-----ccchHHHHHHHhcCCceEEeeeccHHHHHHHHH
Confidence 3 35556666666654 67776555 799999999999984 3488999999999994332 2112222220
Q ss_pred cc-CCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 009759 432 ED-QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAAR 472 (526)
Q Consensus 432 ~~-~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~ 472 (526)
.. .....|+. .........+.++..|+..++.+....+
T Consensus 267 ~lg~~~~l~~~---l~~~~~~~~~~~i~~d~~~rk~l~~~~~ 305 (318)
T COG3980 267 ALGIIKQLGYH---LKDLAKDYEILQIQKDYARRKNLSFGSK 305 (318)
T ss_pred hcCchhhccCC---CchHHHHHHHHHhhhCHHHhhhhhhccc
Confidence 00 00122222 2456777778888888887776655443
No 130
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.85 E-value=1.9e-05 Score=79.66 Aligned_cols=321 Identities=11% Similarity=0.075 Sum_probs=175.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCC--C-------------
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPC--P------------- 181 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~--~------------- 181 (526)
|||++...+ . ...-|.+..+..+++.|++.. .+++|++..+.......+..+.+...+-. .
T Consensus 1 ~~i~i~G~~-g-~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (426)
T PRK10017 1 MKLLILGNH-T-CGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKK 78 (426)
T ss_pred CeEEEEccc-c-CCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHH
Confidence 799887653 2 456788999999999999985 67888887665433222211111111000 0
Q ss_pred -----c----------cccccchhc---ccHHHHHHHHhcCCCEEEECCCchH-------HHHHHHHHHhcCCCEEEEEe
Q 009759 182 -----W----------YQKVPLSLA---LSPRIISEVARFKPDIIHASSPGIM-------VFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 182 -----~----------~~~~~~~~~---~~~~l~~~l~~~~pDiV~~~~~~~~-------~~~~~~~~~~~~~p~v~~~h 236 (526)
+ ..+....+. ....+.+.++ +.|+++..+...+ .+...++++..|+|+++.-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 79 VLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLS--GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHH--hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 0 000001111 1223344454 6799888543221 12224567888999999888
Q ss_pred cCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH-----H
Q 009759 237 THVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-----E 311 (526)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~-----~ 311 (526)
+..|.. ....+.+.+..++++|.|.+=.+...+.+++.+. ...++.+.+ |+.+.-+....+ .
T Consensus 157 siGPf~---------~~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk~lGv-~~~~v~~~a---DpAF~L~~~~~~~~~~~~ 223 (426)
T PRK10017 157 SVGPFQ---------DEQFNQLANYVFGHCDALILRESVSLDLMKRSNI-TTAKVEHGV---DTAWLVDHHTEDFTASYA 223 (426)
T ss_pred cCCCcC---------CHHHHHHHHHHHhcCCEEEEccHHHHHHHHHhCC-CccceEEec---ChhhhCCccccccccchh
Confidence 876543 2223467788899999999988888888888764 445666654 333222211100 0
Q ss_pred HHHhhcCCCCCCcEEEEE-eccccc-c--------cHHHHHHHHHhC--CCcEEEEEeC-------Cc-cHH---HHHHH
Q 009759 312 MRWRLSNGEPDKPLIVHV-GRLGVE-K--------SLDFLKRVMDRL--PEARIAFIGD-------GP-YRE---ELEKM 368 (526)
Q Consensus 312 ~~~~~~~~~~~~~~i~~v-G~l~~~-K--------g~~~li~a~~~l--~~~~l~ivG~-------g~-~~~---~l~~l 368 (526)
....+.. ..++++|++. ..+.+. + -...+.+++..+ .+.+++++.. ++ +.. .+.+.
T Consensus 224 ~~~~~~~-~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~ 302 (426)
T PRK10017 224 VQHWLDV-AAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQH 302 (426)
T ss_pred hhhhhcc-cccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHh
Confidence 1111111 1233455443 333211 1 123344444444 3566655542 12 222 22233
Q ss_pred hcCC-CeE-EecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC----CCCceecccCCCceeEee
Q 009759 369 FTGM-PAV-FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLF 442 (526)
Q Consensus 369 ~~~~-~V~-~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g----g~~e~v~~~~~~~~g~~~ 442 (526)
.... +++ +....+..++..++++||++|..-. -.++=|++.|+|+|+-... ++-+.+ |...+++
T Consensus 303 ~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~l-----g~~~~~~ 372 (426)
T PRK10017 303 VSDPARYHVVMDELNDLEMGKILGACELTVGTRL-----HSAIISMNFGTPAIAINYEHKSAGIMQQL-----GLPEMAI 372 (426)
T ss_pred cccccceeEecCCCChHHHHHHHhhCCEEEEecc-----hHHHHHHHcCCCEEEeeehHHHHHHHHHc-----CCccEEe
Confidence 2222 233 3344455688899999999984332 2566799999999987543 222223 2222322
Q ss_pred --CCCCHHHHHHHHHHhhhCHHHHHHH
Q 009759 443 --NPGDLDDCLSKLEPLLYNQELRETM 467 (526)
Q Consensus 443 --~~~d~~~la~ai~~ll~d~~~~~~~ 467 (526)
..-+.+++.+.+.+++++.+..++.
T Consensus 373 ~~~~l~~~~Li~~v~~~~~~r~~~~~~ 399 (426)
T PRK10017 373 DIRHLLDGSLQAMVADTLGQLPALNAR 399 (426)
T ss_pred chhhCCHHHHHHHHHHHHhCHHHHHHH
Confidence 3446789999999999987654443
No 131
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.2e-06 Score=85.56 Aligned_cols=346 Identities=12% Similarity=0.084 Sum_probs=196.4
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc-CceeccccccCCCccccccchhc
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY-GAKLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 191 (526)
+...++.||.++++. ......+..+..+.+.+-+.-++|..+..+.......+ .+...-...++.. ..
T Consensus 254 ~~~~~rlRvGylS~d---lr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~--------~~ 322 (620)
T COG3914 254 KRNGKRLRVGYLSSD---LRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIG--------RM 322 (620)
T ss_pred cccccceeEEEeccc---cccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccC--------Cc
Confidence 345677899999875 23345556677777777777788888877633222111 0000000111111 01
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
-...+...|+.-..||.+--+........-+ ....-.|+.+++-+.......... . +--+|.++.
T Consensus 323 dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v-~A~RpAPiqvswlGy~aT~g~p~~-D-------------Y~I~D~y~v 387 (620)
T COG3914 323 DDAEIANAIRTDGIDILVDLDGHTVDTRCQV-FAHRPAPIQVSWLGYPATTGSPNM-D-------------YFISDPYTV 387 (620)
T ss_pred CHHHHHHHHHhcCCeEEEeccCceeccchhh-hhcCCCceEEeecccccccCCCcc-e-------------EEeeCceec
Confidence 1235666677778998876543222211222 234457888877665432211110 0 112455555
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccccc--ccHHHHHHHHHhCC
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE--KSLDFLKRVMDRLP 349 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~--Kg~~~li~a~~~l~ 349 (526)
+ +...+++.+... ++--.+-++|- +.+.... --|..+++ +++..+++++++..+. .-++.-.++++..|
T Consensus 388 P-p~ae~yysEkl~----RLp~cy~p~d~--~~~v~p~-~sR~~lgl-p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP 458 (620)
T COG3914 388 P-PTAEEYYSEKLW----RLPQCYQPVDG--FEPVTPP-PSRAQLGL-PEDAVVFCCFNNYFKITPEVFALWMQILSAVP 458 (620)
T ss_pred C-chHHHHHHHHHH----hcccccCCCCC--cccCCCC-cchhhcCC-CCCeEEEEecCCcccCCHHHHHHHHHHHHhCC
Confidence 5 555555554432 22112222332 2222111 22334443 4455555555554322 12455567778889
Q ss_pred CcEEEEEeCCcc---HHHHHHHhcCC-----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 350 EARIAFIGDGPY---REELEKMFTGM-----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 350 ~~~l~ivG~g~~---~~~l~~l~~~~-----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
+-.|.+.|.|+. ...+++++++. +.+|.+..+.++..+.|.-||+++=+.-+. ...+.+|++.+|+|||+-
T Consensus 459 ~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~-g~TTa~daLwm~vPVlT~ 537 (620)
T COG3914 459 NSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYG-GHTTASDALWMGVPVLTR 537 (620)
T ss_pred CcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCC-CccchHHHHHhcCceeee
Confidence 999999987643 34556666544 589999999999999999999999554433 346889999999999975
Q ss_pred CCCCCC-----ceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Q 009759 422 RAGGIP-----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME---KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 422 ~~gg~~-----e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~---~fs~~~~~~~~~~~ly~ 493 (526)
.-..+. .++. .-|..-+++. +.++..+.-..+-.|...+++.+..-.+..+ -|+.+..++++. .+|.
T Consensus 538 ~G~~FasR~~~si~~--~agi~e~vA~--s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le-~~y~ 612 (620)
T COG3914 538 VGEQFASRNGASIAT--NAGIPELVAD--SRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLE-TLYW 612 (620)
T ss_pred ccHHHHHhhhHHHHH--hcCCchhhcC--CHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHH-HHHH
Confidence 321110 1110 1122223344 6677777766777788777776655444443 399999999996 8999
Q ss_pred HHHHHH
Q 009759 494 AAIWFW 499 (526)
Q Consensus 494 ~~l~~~ 499 (526)
++.+.+
T Consensus 613 ~M~~~y 618 (620)
T COG3914 613 GMWSEY 618 (620)
T ss_pred HHHHhh
Confidence 887654
No 132
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.77 E-value=2.7e-05 Score=80.54 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=80.4
Q ss_pred CCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEE-EEeCC--------ccHHHHHHHhcCCCeEEecccChhhHHHHH
Q 009759 321 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDG--------PYREELEKMFTGMPAVFTGMLLGEELSQAY 389 (526)
Q Consensus 321 ~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~-ivG~g--------~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~ 389 (526)
++..+++..|+... .+.+..+.++++..+ ..|+ .++.. ...+.+.+.....++.+.+|+|+. +++
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~-~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~---~iL 359 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSG-QNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQV---LIL 359 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCC-CCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHH---HHh
Confidence 34566778887643 445667777777774 3443 34421 112234444445589999999865 457
Q ss_pred HcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCCceeEee----------CCCCHHHHHHHHH
Q 009759 390 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLF----------NPGDLDDCLSKLE 455 (526)
Q Consensus 390 ~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~~~g~~~----------~~~d~~~la~ai~ 455 (526)
..+++..+- ..+.-++++||+++|+|+|+....+- ...+. +.-+.|+-+ ..-+.++++++|.
T Consensus 360 ~h~~v~~fv--tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~--~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~ 435 (482)
T PLN03007 360 DHQATGGFV--THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVT--QVLRTGVSVGAKKLVKVKGDFISREKVEKAVR 435 (482)
T ss_pred ccCccceee--ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHH--HhhcceeEeccccccccccCcccHHHHHHHHH
Confidence 777663322 23345689999999999999876432 11110 001222221 1237899999999
Q ss_pred HhhhCH
Q 009759 456 PLLYNQ 461 (526)
Q Consensus 456 ~ll~d~ 461 (526)
+++.++
T Consensus 436 ~~m~~~ 441 (482)
T PLN03007 436 EVIVGE 441 (482)
T ss_pred HHhcCc
Confidence 999875
No 133
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.69 E-value=1.2e-06 Score=85.64 Aligned_cols=248 Identities=12% Similarity=0.073 Sum_probs=136.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCc----cccccchhcccH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPW----YQKVPLSLALSP 194 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 194 (526)
|||.+++.. -.+..+...|+++|++ ++.++.-+.... . ........+..-. ...++.......
T Consensus 2 ~~i~i~aGE------~SGD~~ga~l~~~l~~---~~~~~G~GG~~m--~--~~~~~~~~lsv~G~~evl~~~~~~~~~~~ 68 (347)
T PRK14089 2 MKILVSALE------PSANLHLKELLKNLPK---DYELIGIFDKSL--G--NPLYDSREFSIMGFVDVLPKLFFAKKAIK 68 (347)
T ss_pred cEEEEEecc------ccHHHHHHHHHHHHhc---CCEEEEEechHH--H--HhcCChHHhhhhhHHHHHHHHHHHHHHHH
Confidence 688777542 1345667889999987 666666554322 0 0000111111000 011111122223
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhc--CCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLL--CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~--~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
.+.+.. .+||+++.-+...+.+.....++.. ++|+++++-- +. +.|.. ...+.+.+.+|.+++.
T Consensus 69 ~~~~~~--~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~P---qv-----WAWr~----~R~~~i~k~~d~vl~i 134 (347)
T PRK14089 69 EMVELA--KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILP---QV-----WAWKK----GRAKILEKYCDFLASI 134 (347)
T ss_pred HHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc---cc-----eeeCc----chHHHHHHHHhhhhcc
Confidence 333332 5999999877544433333334445 7998876542 11 11111 1245667788998887
Q ss_pred ChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccc--cccHHHHHHHHHhCCC
Q 009759 273 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPE 350 (526)
Q Consensus 273 S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~ 350 (526)
=+...+.+ + .++.++.|++-.. .... +.. . .+++.+.++-|+-.. .+.+..+++++.++.+
T Consensus 135 fPFE~~~y----g---~~~~~VGhPl~d~-~~~~------~~~--~-~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~ 197 (347)
T PRK14089 135 LPFEVQFY----Q---SKATYVGHPLLDE-IKEF------KKD--L-DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG 197 (347)
T ss_pred CCCCHHHh----C---CCCEEECCcHHHh-hhhh------hhh--c-CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh
Confidence 77777766 2 3556777765322 1110 001 1 223334455554321 2445666788877743
Q ss_pred --cEEEEEeCCccHHHHHHHhcCC-CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 351 --ARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 351 --~~l~ivG~g~~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
..+++.|... .+.+++...+. .+.+. ++..++|+.||+++..| |.+.+|++.+|+|.|..
T Consensus 198 ~~~~~~i~~a~~-~~~i~~~~~~~~~~~~~-----~~~~~~m~~aDlal~~S-----GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 198 KEKILVVPSFFK-GKDLKEIYGDISEFEIS-----YDTHKALLEAEFAFICS-----GTATLEAALIGTPFVLA 260 (347)
T ss_pred cCcEEEEeCCCc-HHHHHHHHhcCCCcEEe-----ccHHHHHHhhhHHHhcC-----cHHHHHHHHhCCCEEEE
Confidence 6777777643 35555554432 34433 25678999999999666 78888999999998864
No 134
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.64 E-value=0.00013 Score=75.02 Aligned_cols=337 Identities=14% Similarity=0.101 Sum_probs=168.3
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCC--ccc---cCceeccccc-cCCCcccc--
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVP--QEF---YGAKLIGSRS-FPCPWYQK-- 185 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~--~~~---~~~~~~~~~~-~~~~~~~~-- 185 (526)
..+.+|+++. ++. -|+-.-+.+|++.|..+ |+.|+++++..... ... .++....+.. .+......
T Consensus 8 ~~~~hVvlvp----~pa-~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~ 82 (459)
T PLN02448 8 TTSCHVVAMP----YPG-RGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAAD 82 (459)
T ss_pred CCCcEEEEEC----Ccc-cccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccC
Confidence 4456888884 232 57788899999999999 99999999765311 000 1222222221 01000000
Q ss_pred ccchh-----cccHHHHHHHHhc--CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC---------C---------c
Q 009759 186 VPLSL-----ALSPRIISEVARF--KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH---------V---------P 240 (526)
Q Consensus 186 ~~~~~-----~~~~~l~~~l~~~--~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~---------~---------~ 240 (526)
....+ .....+.+++++. .+|+|+..... ..+..+++..|+|.+...... . +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~---~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 83 FPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYL---FWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCcc---HHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 00000 1112333444432 46888776432 234557788899976543221 0 0
Q ss_pred cc-----------cccc-------ccccccch----HHHHHHHH--hhcCcEEEeCChhHH-HHHHHhccc-CCCcEEEe
Q 009759 241 VY-----------IPRY-------TFSWLVKP----MWLVIKFL--HRAADLTLVPSVAIG-KDLEAARVT-AANKIRIW 294 (526)
Q Consensus 241 ~~-----------~~~~-------~~~~~~~~----~~~~~~~~--~~~ad~ii~~S~~~~-~~l~~~~~~-~~~ki~vi 294 (526)
.. .+.. ........ ...+...+ ...++.|++.|-... ..+.+.... ...++..|
T Consensus 160 ~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~i 239 (459)
T PLN02448 160 VELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPI 239 (459)
T ss_pred CccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEe
Confidence 00 0000 00000000 11111111 345688998887622 222222210 01244444
Q ss_pred ecCCCCCCCC------CCc-ccHHHHHhhcCCCCCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeCCccHHHH
Q 009759 295 KKGVDSESFH------PRF-RSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGPYREEL 365 (526)
Q Consensus 295 ~ngid~~~~~------~~~-~~~~~~~~~~~~~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l 365 (526)
...+...... +.. ...+...-+........+++..|+... ..-+..++++++.. +..|+++..++ ...+
T Consensus 240 GP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~-~~~~ 317 (459)
T PLN02448 240 GPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDS-GVRFLWVARGE-ASRL 317 (459)
T ss_pred cCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCc-hhhH
Confidence 4432210000 000 001222222222234456777887632 23467777888776 56777655432 2223
Q ss_pred HHHhcCCCeEEecccChhhHHHHHHcCcE--EEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCC-Cce
Q 009759 366 EKMFTGMPAVFTGMLLGEELSQAYASGDV--FVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQD-GKI 438 (526)
Q Consensus 366 ~~l~~~~~V~~~g~v~~~~l~~~~~~aDv--~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~-~~~ 438 (526)
.+... .++.+.+|+|+.++ +...++ +| ..+.-++++||+++|+|+|+....+- ...+ .+ -+.
T Consensus 318 ~~~~~-~~~~v~~w~pQ~~i---L~h~~v~~fv----tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v---~~~~g~ 386 (459)
T PLN02448 318 KEICG-DMGLVVPWCDQLKV---LCHSSVGGFW----THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLI---VEDWKI 386 (459)
T ss_pred hHhcc-CCEEEeccCCHHHH---hccCccceEE----ecCchhHHHHHHHcCCCEEeccccccchhhHHHH---HHHhCc
Confidence 33332 36778899987664 555665 55 33445799999999999999876532 2222 22 134
Q ss_pred eEeeC-------CCCHHHHHHHHHHhhhCH-HHHHHHHHHHHH
Q 009759 439 GYLFN-------PGDLDDCLSKLEPLLYNQ-ELRETMGQAARQ 473 (526)
Q Consensus 439 g~~~~-------~~d~~~la~ai~~ll~d~-~~~~~~~~~a~~ 473 (526)
|+-+. ..+.+++++++.+++.++ +..+++++++.+
T Consensus 387 G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~ 429 (459)
T PLN02448 387 GWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKE 429 (459)
T ss_pred eEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 54442 237899999999999864 333444444443
No 135
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.64 E-value=2.5e-06 Score=85.70 Aligned_cols=270 Identities=12% Similarity=0.074 Sum_probs=128.1
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccc-cccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHH
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI-PRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEA 282 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~ 282 (526)
+.++++....... ........+.++|...|+. +.-. +....... .............|.+++.|+...+.+.+
T Consensus 78 ~Ak~~i~~~~~~~---~~~~~~~~~~~~i~lwHG~-~~K~~g~~~~~~~--~~~~~~~~~~~~~d~~~~~s~~~~~~~~~ 151 (369)
T PF04464_consen 78 RAKYIISDSYFPD---LIYFKKRKNQKYIQLWHGI-PLKKIGYDSPDNK--NYRKNYKRNYRNYDYFIVSSEFEKEIFKK 151 (369)
T ss_dssp HEEEEEESS---T-----TS---TTSEEEE--SS---SB--GGG-S-----TS-HHHHHHHTT-SEEEESSHHHHHHHHH
T ss_pred hCcEEEECCCCCc---ccccccCCCcEEEEecCCC-cccccchhccccc--cchhhhhhhccCCcEEEECCHHHHHHHHH
Confidence 4677777742111 0122345678899999997 3211 11100000 00013455678899999999999999999
Q ss_pred hcccCCCcEEEeecCCCCCCCCCCcc-cHHHHHhhcCCCCCCcEEEEEecccccccH------------HHHHHHHHhCC
Q 009759 283 ARVTAANKIRIWKKGVDSESFHPRFR-SSEMRWRLSNGEPDKPLIVHVGRLGVEKSL------------DFLKRVMDRLP 349 (526)
Q Consensus 283 ~~~~~~~ki~vi~ngid~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~------------~~li~a~~~l~ 349 (526)
.++.+.+++.+...+-....+..... ...+...++. ..++.+|+|+-++...... +.+. ...-.
T Consensus 152 ~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~-~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~--~~~~~ 228 (369)
T PF04464_consen 152 AFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGI-DKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLN--FLLKN 228 (369)
T ss_dssp HTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT---SS-EEEEEE----GGG--GGSS----TT-HHHHH--HHHTT
T ss_pred HhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhcc-CCCCcEEEEeeccccccccccccccccccCHHHHH--HHhCC
Confidence 88766666665543322222222211 2344445544 4566689998766433222 2222 22225
Q ss_pred CcEEEEEeCCccHHHHHHHh-cCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe--CCCCC
Q 009759 350 EARIAFIGDGPYREELEKMF-TGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV--RAGGI 426 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~-~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~--~~gg~ 426 (526)
++.+++-............. ...+|.+...- +++.+++..||++| .-++..++|++.+|+|||-. |....
T Consensus 229 ~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aDiLI-----TDySSi~fD~~~l~KPiify~~D~~~Y 301 (369)
T PF04464_consen 229 NYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAADILI-----TDYSSIIFDFLLLNKPIIFYQPDLEEY 301 (369)
T ss_dssp TEEEEE--SHHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEE-----ESS-THHHHHGGGT--EEEE-TTTTTT
T ss_pred CcEEEEEeCchhhhchhhhhccCCcEEECCCC--CCHHHHHHhcCEEE-----EechhHHHHHHHhCCCEEEEeccHHHH
Confidence 77777766432222222211 12256654433 58999999999999 44577999999999999954 33211
Q ss_pred ---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009759 427 ---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ 491 (526)
Q Consensus 427 ---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~l 491 (526)
+.+..+.++...|-++. +.++|.++|..++.++...++..+...+..-.|.-.+..+++.+.+
T Consensus 302 ~~~rg~~~~~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 302 EKERGFYFDYEEDLPGPIVY--NFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYI 367 (369)
T ss_dssp TTTSSBSS-TTTSSSS-EES--SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHH
T ss_pred hhccCCCCchHhhCCCceeC--CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 11111112334455665 8999999999998876654443333333332344445565555443
No 136
>PLN02208 glycosyltransferase family protein
Probab=98.64 E-value=0.00019 Score=73.08 Aligned_cols=339 Identities=13% Similarity=0.097 Sum_probs=168.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc-----c-cCceecccc-----ccCCCccc--
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE-----F-YGAKLIGSR-----SFPCPWYQ-- 184 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-----~-~~~~~~~~~-----~~~~~~~~-- 184 (526)
+++|+++ ||+. -|+-.-+.++++.|+.+|++|+++++......- . ..+...... .++.....
T Consensus 4 ~~hvv~~----P~pa-qGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMF----PWFA-FGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTS 78 (442)
T ss_pred CCEEEEe----cCcc-ccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCccccc
Confidence 4577777 3333 588889999999999999999999965321110 0 011111110 01110000
Q ss_pred cccch---------hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec-------------CCccc
Q 009759 185 KVPLS---------LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT-------------HVPVY 242 (526)
Q Consensus 185 ~~~~~---------~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~-------------~~~~~ 242 (526)
..... ......+.+++++..+|+|++.. ..+ +..+++..|+|.++..-. .....
T Consensus 79 ~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D~---~~w-a~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 154 (442)
T PLN02208 79 DIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFDF---AQW-IPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVP 154 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECC---cHh-HHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCC
Confidence 00000 11223455566667889888873 223 355678889997643211 10000
Q ss_pred ccccc-------cc----c--ccchHHHHH---HHHhhcCcEEEeCChhHHH-HHHHhcccC-CCcEEEeecCCCCCCCC
Q 009759 243 IPRYT-------FS----W--LVKPMWLVI---KFLHRAADLTLVPSVAIGK-DLEAARVTA-ANKIRIWKKGVDSESFH 304 (526)
Q Consensus 243 ~~~~~-------~~----~--~~~~~~~~~---~~~~~~ad~ii~~S~~~~~-~l~~~~~~~-~~ki~vi~ngid~~~~~ 304 (526)
.+... .. . ......... ...+..+|.+++.|-...+ .+.+....+ ..++..|..-..... .
T Consensus 155 ~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~-~ 233 (442)
T PLN02208 155 PPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD-T 233 (442)
T ss_pred CCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC-C
Confidence 00000 00 0 000011111 1245678999998865443 222222111 135555543321110 0
Q ss_pred CCcccHHHHHhhcCCCCCCcEEEEEecccc--cccHHHH-HHH-HHhCCCcEEEEEeC-C------ccHHHHHHHhcCCC
Q 009759 305 PRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFL-KRV-MDRLPEARIAFIGD-G------PYREELEKMFTGMP 373 (526)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~--~Kg~~~l-i~a-~~~l~~~~l~ivG~-g------~~~~~l~~l~~~~~ 373 (526)
......+...-+....++..+++.+|+... .+.+..+ ..+ +..+| +.+++--. + ...+.+.+..++.|
T Consensus 234 ~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g 312 (442)
T PLN02208 234 SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRG 312 (442)
T ss_pred CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCC
Confidence 011122333333222334566777887743 1212222 222 33333 33333211 1 12234444455568
Q ss_pred eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCCceeEeeCC-----
Q 009759 374 AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNP----- 444 (526)
Q Consensus 374 V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~~~g~~~~~----- 444 (526)
+.+.+|+|+.++ ++...+..+-+ .+.-++++||+++|+|+|+....+- ...+. +.-+.|+.+..
T Consensus 313 ~~v~~W~PQ~~i---L~H~~v~~Fvt--HcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 313 VVWGGWVQQPLI---LDHPSIGCFVN--HCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMT--EEFEVSVEVSREKTGW 385 (442)
T ss_pred cEeeccCCHHHH---hcCCccCeEEc--cCCchHHHHHHHcCCCEEecCcchhhHHHHHHHH--HHhceeEEeccccCCc
Confidence 888899987764 55565533222 3344689999999999999876432 22220 22345655532
Q ss_pred CCHHHHHHHHHHhhhCH-HHHHHHHHHHHHH
Q 009759 445 GDLDDCLSKLEPLLYNQ-ELRETMGQAARQE 474 (526)
Q Consensus 445 ~d~~~la~ai~~ll~d~-~~~~~~~~~a~~~ 474 (526)
-+.++++++|.+++.++ +..+++.+++++.
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 37889999999999765 4456666665554
No 137
>PLN02670 transferase, transferring glycosyl groups
Probab=98.63 E-value=0.00014 Score=74.46 Aligned_cols=163 Identities=10% Similarity=0.074 Sum_probs=97.5
Q ss_pred CCCcEEEEEeccc--ccccHHHHHHHHHhCCCcEEEEE-eC--C-------ccHHHHHHHhcCCCeEEecccChhhHHHH
Q 009759 321 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFI-GD--G-------PYREELEKMFTGMPAVFTGMLLGEELSQA 388 (526)
Q Consensus 321 ~~~~~i~~vG~l~--~~Kg~~~li~a~~~l~~~~l~iv-G~--g-------~~~~~l~~l~~~~~V~~~g~v~~~~l~~~ 388 (526)
++..+.+.+|++. ...-+..+..+++..+. .|+.+ .. + ...+.+.+..++.++.+.+|+|+.++
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~-~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~I--- 352 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSET-PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKI--- 352 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCC-CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHH---
Confidence 3456667778763 33457778888888865 44433 21 1 01123334444456888899987664
Q ss_pred HHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCC------CCHHHHHHHHHHhh
Q 009759 389 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP------GDLDDCLSKLEPLL 458 (526)
Q Consensus 389 ~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~------~d~~~la~ai~~ll 458 (526)
++...+..+- ..+.-++++||+++|+|+|+....+ ....+ +..+.|+.+.. -+.+++.++|.+++
T Consensus 353 L~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm 427 (472)
T PLN02670 353 LSHESVGGFL--THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLL---HGKKLGLEVPRDERDGSFTSDSVAESVRLAM 427 (472)
T ss_pred hcCcccceee--ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHH---HHcCeeEEeeccccCCcCcHHHHHHHHHHHh
Confidence 5555552222 2344568999999999999987643 22233 33456666532 36899999999999
Q ss_pred hCHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 009759 459 YNQELRETMGQAARQEME----KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 459 ~d~~~~~~~~~~a~~~~~----~fs~~~~~~~~~~~ly~ 493 (526)
.+++ -+++++++++..+ +=..+.+++.+++.+|+
T Consensus 428 ~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 428 VDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred cCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 7742 2234444444433 44556666666544443
No 138
>PLN02764 glycosyltransferase family protein
Probab=98.62 E-value=0.00018 Score=72.98 Aligned_cols=343 Identities=15% Similarity=0.097 Sum_probs=170.9
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--cccCce-eccccccCCCccccc------
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--EFYGAK-LIGSRSFPCPWYQKV------ 186 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~------ 186 (526)
+.+++|+++ |++. -|+-.-+.+|++.|+.+|+.|+++++...... ...... .+.+...+++....+
T Consensus 3 ~~~~Hvvl~----P~pa-qGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~ 77 (453)
T PLN02764 3 GLKFHVLMY----PWFA-TGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTET 77 (453)
T ss_pred CCCcEEEEE----CCcc-cccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccc
Confidence 345788777 3343 48888999999999999999999987653210 000000 001111111100000
Q ss_pred ----cch----h-----cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec-------------C--
Q 009759 187 ----PLS----L-----ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT-------------H-- 238 (526)
Q Consensus 187 ----~~~----~-----~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~-------------~-- 238 (526)
... + .....+.+++++..+|.|++.. .. .+.-.++..|+|.++..-. .
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~---~~-w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 153 (453)
T PLN02764 78 VSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF---AH-WIPEVARDFGLKTVKYVVVSASTIASMLVPGGELG 153 (453)
T ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC---ch-hHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCC
Confidence 100 0 1112345556655788887763 22 2455678888986653211 1
Q ss_pred --Ccccc------ccc-cccccc--c-----hHHHHHH---HHhhcCcEEEeCChhHHH-HHHHhcccC-CCcEEEeecC
Q 009759 239 --VPVYI------PRY-TFSWLV--K-----PMWLVIK---FLHRAADLTLVPSVAIGK-DLEAARVTA-ANKIRIWKKG 297 (526)
Q Consensus 239 --~~~~~------~~~-~~~~~~--~-----~~~~~~~---~~~~~ad~ii~~S~~~~~-~l~~~~~~~-~~ki~vi~ng 297 (526)
.+... +.. ...... . ....... .....++.|+++|-...+ .+.+..... ..++..|..-
T Consensus 154 ~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL 233 (453)
T PLN02764 154 VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPV 233 (453)
T ss_pred CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccC
Confidence 00000 000 000000 0 0111111 235678889888754333 222222100 1346655443
Q ss_pred CCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccc--cccHHHHHHHHHhCC-CcEEEEEe-CC------ccHHHHHH
Q 009759 298 VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLP-EARIAFIG-DG------PYREELEK 367 (526)
Q Consensus 298 id~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~-~~~l~ivG-~g------~~~~~l~~ 367 (526)
+.... .........-.-+....++..+.+.+|+... .+.+..+...++.-. ++..++-- .+ ...+.++.
T Consensus 234 ~~~~~-~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~ 312 (453)
T PLN02764 234 FPEPD-KTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEE 312 (453)
T ss_pred ccCcc-ccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHh
Confidence 21110 0000112222223223445566788888733 344444544444331 23333321 11 12223344
Q ss_pred HhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCCceeEeeC
Q 009759 368 MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFN 443 (526)
Q Consensus 368 l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~~~g~~~~ 443 (526)
..++.++.+.+|+|+.++... .+++++| ..+.-++++||+++|+|+|+....+- ...+. +.-+.|+-+.
T Consensus 313 r~~grG~v~~~W~PQ~~vL~h-~~v~~Fv----tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~--~~~g~gv~~~ 385 (453)
T PLN02764 313 RVKGRGVVWGGWVQQPLILSH-PSVGCFV----SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS--DELKVSVEVA 385 (453)
T ss_pred hhccCCcEEeCCCCHHHHhcC-cccCeEE----ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH--HHhceEEEec
Confidence 444557888899987765332 3345566 34455799999999999999876532 22220 1224455432
Q ss_pred -----CCCHHHHHHHHHHhhhCH-HHHHHHHHHHHHHH
Q 009759 444 -----PGDLDDCLSKLEPLLYNQ-ELRETMGQAARQEM 475 (526)
Q Consensus 444 -----~~d~~~la~ai~~ll~d~-~~~~~~~~~a~~~~ 475 (526)
.-+.+++.+++.+++.+. +..+++.+++++.-
T Consensus 386 ~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~ 423 (453)
T PLN02764 386 REETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWR 423 (453)
T ss_pred cccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 137899999999999864 44556666655543
No 139
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.56 E-value=2.4e-06 Score=85.67 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=112.0
Q ss_pred HHhhcCCCCCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeCCc-cHHHHHHHhcCC-----CeEEecccChhh
Q 009759 313 RWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTGM-----PAVFTGMLLGEE 384 (526)
Q Consensus 313 ~~~~~~~~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~g~-~~~~l~~l~~~~-----~V~~~g~v~~~~ 384 (526)
|..+++ +++.++++++.++.+ ..-++...++++..|+.+|++...+. ..+.+++.+.+. ++.|.+..+.++
T Consensus 276 R~~~gL-p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~e 354 (468)
T PF13844_consen 276 RAQYGL-PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREE 354 (468)
T ss_dssp TGGGT---SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHH
T ss_pred HHHcCC-CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHH
Confidence 444555 456666777776643 23466777888888999998876442 334555555433 588999888888
Q ss_pred HHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceeccc---CCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 385 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 385 l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~---~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
....|+.+||++=+.. -+.+.+.+||+.+|+|||+-....+..-+... .-|-..+++. |.++..+...++.+|+
T Consensus 355 hl~~~~~~DI~LDT~p-~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 355 HLRRYQLADICLDTFP-YNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--SEEEYVEIAVRLATDP 431 (468)
T ss_dssp HHHHGGG-SEEE--SS-S--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--SHHHHHHHHHHHHH-H
T ss_pred HHHHhhhCCEEeeCCC-CCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--CHHHHHHHHHHHhCCH
Confidence 8899999999996643 23467999999999999987543322211000 0122233444 8999999999999999
Q ss_pred HHHHHHHHHHHHHH-H--hCCHHHHHHHHHHHHHHHH
Q 009759 462 ELRETMGQAARQEM-E--KYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 462 ~~~~~~~~~a~~~~-~--~fs~~~~~~~~~~~ly~~~ 495 (526)
+.+++++++.++.. + -|+....++.++ +.|+++
T Consensus 432 ~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE-~a~~~m 467 (468)
T PF13844_consen 432 ERLRALRAKLRDRRSKSPLFDPKRFARNLE-AAYRQM 467 (468)
T ss_dssp HHHHHHHHHHHHHHHHSGGG-HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHH-HHHHHh
Confidence 99999999988876 3 399999999996 777764
No 140
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=1.9e-07 Score=89.47 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=72.3
Q ss_pred hHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceeccc--CCCceeEee-C------CCCHHHHHHHH
Q 009759 384 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QDGKIGYLF-N------PGDLDDCLSKL 454 (526)
Q Consensus 384 ~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~--~~~~~g~~~-~------~~d~~~la~ai 454 (526)
|..++.+.|++.|+||.+|++|.+..|+-.+|+|-|+|+..|..-+..++ .+...|+.+ + .++.+++++-+
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m 572 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFM 572 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHH
Confidence 56788999999999999999999999999999999999998866554321 223345543 2 23456677666
Q ss_pred HHhhhCHHHHHHHHH-HHHHHHH-hCCHHHHHHHHH
Q 009759 455 EPLLYNQELRETMGQ-AARQEME-KYDWRAATRTIR 488 (526)
Q Consensus 455 ~~ll~d~~~~~~~~~-~a~~~~~-~fs~~~~~~~~~ 488 (526)
.+.... ..++++-+ +.-+.+. -.+|..+...|.
T Consensus 573 ~~F~~q-sRRQRIiqRNrtErLSdLLDWk~lG~~Y~ 607 (692)
T KOG3742|consen 573 YEFCKQ-SRRQRIIQRNRTERLSDLLDWKYLGRYYR 607 (692)
T ss_pred HHHHHH-HHHHHHHHhcchhhHHHHHhHHHHhHHHH
Confidence 666543 33444433 3334443 588988877775
No 141
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.48 E-value=4.9e-05 Score=71.67 Aligned_cols=324 Identities=16% Similarity=0.104 Sum_probs=174.3
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCcc--ccCceeccccccCCCc---ccccc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQE--FYGAKLIGSRSFPCPW---YQKVP 187 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~ 187 (526)
..+.|||++.++. ...=|+-++...+|++|.+. |.+|.+++........ ..+++.+..+...... +....
T Consensus 6 ~~~~~Ri~~Yshd---~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d 82 (400)
T COG4671 6 ASKRPRILFYSHD---LLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVD 82 (400)
T ss_pred hhccceEEEEehh---hccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeee
Confidence 3445699999885 33447889999999999999 9999999876532211 1233333222222111 11000
Q ss_pred ch-------hcccHHHHHHHHhcCCCEEEECCCchHH----HHHHHHHHhcCCCEEEEEecCCcccccccccccccchHH
Q 009759 188 LS-------LALSPRIISEVARFKPDIIHASSPGIMV----FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMW 256 (526)
Q Consensus 188 ~~-------~~~~~~l~~~l~~~~pDiV~~~~~~~~~----~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~ 256 (526)
.. .....-+...++.++|||+++....... ...+-..+..+.+.+.-..+..... ......|.. .
T Consensus 83 ~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D~p-~~~~~~w~~---~ 158 (400)
T COG4671 83 LDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRDIP-QELEADWRR---A 158 (400)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhhch-hhhccchhh---h
Confidence 00 1112245566778999999997643221 1122233444545555444432111 011111111 2
Q ss_pred HHHHHHhhcCcEEEeCChhHHHHHHHhccc-CCCcEEEeecCCCCC---CCCCCcccHHHHHhhcCCCCCCcEEEEEecc
Q 009759 257 LVIKFLHRAADLTLVPSVAIGKDLEAARVT-AANKIRIWKKGVDSE---SFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 332 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~-~~~ki~vi~ngid~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l 332 (526)
..++.+-++.|.|++..+-.-..+...+.. +.-+-.+.+.|.=-. ........ ..++..+++.+|.=
T Consensus 159 ~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~~---------~pE~~~Ilvs~GGG 229 (400)
T COG4671 159 ETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPHE---------APEGFDILVSVGGG 229 (400)
T ss_pred HHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCcC---------CCccceEEEecCCC
Confidence 446667788899988766544444333321 112222333333211 01111000 13445667777753
Q ss_pred -cccccHHHHHHHHHhCCCcE---EEEEeCCccHHHHHHHh---cC-CCeEEecccChhhHHHHHHcCcEEEecCCCCCC
Q 009759 333 -GVEKSLDFLKRVMDRLPEAR---IAFIGDGPYREELEKMF---TG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETL 404 (526)
Q Consensus 333 -~~~Kg~~~li~a~~~l~~~~---l~ivG~g~~~~~l~~l~---~~-~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~ 404 (526)
+-..=++..+.|...+++++ +++.|..-..+...++. .+ .+|.+..|. +++..++..|+.+|.- +.
T Consensus 230 ~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~--~~~~~ll~gA~~vVSm----~G 303 (400)
T COG4671 230 ADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFR--NDFESLLAGARLVVSM----GG 303 (400)
T ss_pred hhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhh--hhHHHHHHhhheeeec----cc
Confidence 22233555666666666654 55566433333333333 22 379999888 7999999999999933 22
Q ss_pred cHHHHHHHHcCCcEEEeCCCCCC-c-eeccc---CCCceeEee-CCCCHHHHHHHHHHhhhC
Q 009759 405 GLVVLEAMSSGIPVVGVRAGGIP-D-IIPED---QDGKIGYLF-NPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 405 ~~~ilEAma~G~PvI~~~~gg~~-e-~v~~~---~~~~~g~~~-~~~d~~~la~ai~~ll~d 460 (526)
=+++.|-+++|+|.+.-..+.-. | .+... +-|-..++. +.-+++.++++|..+++-
T Consensus 304 YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 304 YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 36899999999998876544222 2 22100 112222232 234688999999988873
No 142
>PLN02210 UDP-glucosyl transferase
Probab=98.46 E-value=0.0012 Score=67.58 Aligned_cols=352 Identities=11% Similarity=0.048 Sum_probs=173.4
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHH--HHHCCCeEEEEEeCCCCCccccC----ceeccccccC--CCcc--cc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKY--LREMGDEVMVVTTHEGVPQEFYG----AKLIGSRSFP--CPWY--QK 185 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~--L~~~G~~V~vi~~~~~~~~~~~~----~~~~~~~~~~--~~~~--~~ 185 (526)
..+.+|+++- ++. -|+-.-+.+|++. |..+|+.|+++++...... ... ...+....++ .+.. ..
T Consensus 6 ~~~~hvv~~P----~pa-~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~-~~~~~~~~~~~~~~~~~~glp~~~~~~ 79 (456)
T PLN02210 6 GQETHVLMVT----LAF-QGHINPMLKLAKHLSLSSKNLHFTLATTEQARDL-LSTVEKPRRPVDLVFFSDGLPKDDPRA 79 (456)
T ss_pred CCCCEEEEeC----Ccc-cccHHHHHHHHHHHHhhcCCcEEEEEeccchhhh-hccccCCCCceEEEECCCCCCCCcccC
Confidence 3346887773 333 5888889999999 5699999999997653211 110 0111111111 1100 00
Q ss_pred ccch-----hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec----------C------Ccc---
Q 009759 186 VPLS-----LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT----------H------VPV--- 241 (526)
Q Consensus 186 ~~~~-----~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~----------~------~~~--- 241 (526)
.... -.....+.+.+.+.++|.|+...... .+..+++..|+|.+...-. . .+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~---w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~ 156 (456)
T PLN02210 80 PETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTP---WVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLED 156 (456)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcch---hHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccc
Confidence 0000 01122455566666789887765322 2445678888987543211 0 000
Q ss_pred -----cccccc---ccc----cc-c---hHHHHH-H--HHhhcCcEEEeCChhHHHH-HHHhcccCCCcEEEeecCCCCC
Q 009759 242 -----YIPRYT---FSW----LV-K---PMWLVI-K--FLHRAADLTLVPSVAIGKD-LEAARVTAANKIRIWKKGVDSE 301 (526)
Q Consensus 242 -----~~~~~~---~~~----~~-~---~~~~~~-~--~~~~~ad~ii~~S~~~~~~-l~~~~~~~~~ki~vi~ngid~~ 301 (526)
..+... ... .. . ...... . .....++.+++.|-...+. +.+... ...++..|..-+...
T Consensus 157 ~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~-~~~~v~~VGPl~~~~ 235 (456)
T PLN02210 157 LNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA-DLKPVIPIGPLVSPF 235 (456)
T ss_pred cCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh-hcCCEEEEcccCchh
Confidence 000000 000 00 0 011111 1 1345678899888654332 211111 112455554433210
Q ss_pred C--CCCC-----------cccHHHHHhhcCCCCCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEE-EeCC---ccH
Q 009759 302 S--FHPR-----------FRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDG---PYR 362 (526)
Q Consensus 302 ~--~~~~-----------~~~~~~~~~~~~~~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~i-vG~g---~~~ 362 (526)
. .... ........-+....+...+++..|+... ..-+..+..+++..+ .+|++ ++.. ...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~-~~flw~~~~~~~~~~~ 314 (456)
T PLN02210 236 LLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRG-VPFLWVIRPKEKAQNV 314 (456)
T ss_pred hcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEeCCccccch
Confidence 0 0000 0011111122111234456778887643 334667777777764 45444 4421 122
Q ss_pred HHHHHHhcCCCeEEecccChhhHHHHHHcCc--EEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC----ceecccCC-
Q 009759 363 EELEKMFTGMPAVFTGMLLGEELSQAYASGD--VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP----DIIPEDQD- 435 (526)
Q Consensus 363 ~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aD--v~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~----e~v~~~~~- 435 (526)
+.+.+.....+..+.+|+|+.+ +++.++ ++| ..+.-++++||+++|+|+|+-...+-. ..+ .+
T Consensus 315 ~~~~~~~~~~~g~v~~w~PQ~~---iL~h~~vg~Fi----tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~---~~~ 384 (456)
T PLN02210 315 QVLQEMVKEGQGVVLEWSPQEK---ILSHMAISCFV----THCGWNSTIETVVAGVPVVAYPSWTDQPIDARLL---VDV 384 (456)
T ss_pred hhHHhhccCCCeEEEecCCHHH---HhcCcCcCeEE----eeCCcccHHHHHHcCCCEEecccccccHHHHHHH---HHH
Confidence 3344443223445679998765 577776 555 223335899999999999998765322 223 22
Q ss_pred CceeEeeC------CCCHHHHHHHHHHhhhCHH------HHHHHHHHHHHHHH-hCCHHHHHHHHH
Q 009759 436 GKIGYLFN------PGDLDDCLSKLEPLLYNQE------LRETMGQAARQEME-KYDWRAATRTIR 488 (526)
Q Consensus 436 ~~~g~~~~------~~d~~~la~ai~~ll~d~~------~~~~~~~~a~~~~~-~fs~~~~~~~~~ 488 (526)
-+.|+.+. .-+.+++++++.+++.+++ ..+++++.+++.++ .=|.....+.++
T Consensus 385 ~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v 450 (456)
T PLN02210 385 FGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFI 450 (456)
T ss_pred hCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 35665553 2378899999999997643 22334455555553 334444444443
No 143
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.45 E-value=4.7e-05 Score=71.27 Aligned_cols=272 Identities=11% Similarity=0.056 Sum_probs=155.5
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHH-HHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
...+.+..+..+.+-+++|+..... +.+++..+..-.++.+++.+. +.. .....+..+....+.+.+.++..++++
T Consensus 28 a~avi~~a~~~r~~rff~HGqFn~~lwlall~g~~~~~q~yWhiWGa--DLY-e~~~~lk~rlfy~lRR~aq~rvg~v~a 104 (322)
T PRK02797 28 AEAVIAKAKANRAQRFFLHGQFNPTLWLALLSGKIKPKQFYWHIWGA--DLY-EESKGLKFRLFYPLRRLAQKRVGHVFA 104 (322)
T ss_pred HHHHHHHHhhCccceEEEecCCCHHHHHHHHhCCcCccceEEEEECh--hhh-hcccchhHHHHHHHHHHHHhhcCeEEE
Confidence 3444555555677888898854333 333333333333455544442 222 222455556667788889999999999
Q ss_pred CChhHHHHH-HHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecc-cccccHHHHHHHHHhC-
Q 009759 272 PSVAIGKDL-EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL- 348 (526)
Q Consensus 272 ~S~~~~~~l-~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l-~~~Kg~~~li~a~~~l- 348 (526)
.......+ ++.+..+ .+....|.-.+......... ..++..+.+.+|+- ++.-+...+++++.+.
T Consensus 105 -trGD~~~~a~~~~~v~-~~llyfpt~m~~~l~~~~~~----------~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~ 172 (322)
T PRK02797 105 -TRGDLSYFAQRHPKVP-GSLLYFPTRMDPSLNTMAND----------RQRAGKMTILVGNSGDRSNRHIEALRALHQQF 172 (322)
T ss_pred -ecchHHHHHHhcCCCC-ccEEecCCcchhhhcccccc----------ccCCCceEEEEeCCCCCcccHHHHHHHHHHHh
Confidence 55555554 4554443 33433333232221111100 11233455667765 5555677777777665
Q ss_pred -CCcEEEEE-e----CCccHHHHHHHhcCC----CeE-EecccChhhHHHHHHcCcEEEecC-CCCCCcHHHHHHHHcCC
Q 009759 349 -PEARIAFI-G----DGPYREELEKMFTGM----PAV-FTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGI 416 (526)
Q Consensus 349 -~~~~l~iv-G----~g~~~~~l~~l~~~~----~V~-~~g~v~~~~l~~~~~~aDv~v~ps-~~e~~~~~ilEAma~G~ 416 (526)
.++++++. | +..+.+++++...+. +++ +..+++.+|..++++.||+.++-- +-.|+|+.++ .+.+|+
T Consensus 173 ~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~l-Li~~G~ 251 (322)
T PRK02797 173 GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCL-LIQLGK 251 (322)
T ss_pred CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHH-HHHCCC
Confidence 46777663 3 334566666655533 444 467889999999999999998764 4678886554 899999
Q ss_pred cEEEe-CCCCCCceecccCCCceeEeeCCCC--HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 009759 417 PVVGV-RAGGIPDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 417 PvI~~-~~gg~~e~v~~~~~~~~g~~~~~~d--~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~ 493 (526)
||+.+ +.+-..++. +.+... +++.++ ...+.+ ..+++...-++.+. |+-++..+.+. .++.
T Consensus 252 ~v~l~r~n~fwqdl~---e~gv~V-lf~~d~L~~~~v~e----------~~rql~~~dk~~I~-Ff~pn~~~~W~-~~l~ 315 (322)
T PRK02797 252 PVVLSRDNPFWQDLT---EQGLPV-LFTGDDLDEDIVRE----------AQRQLASVDKNIIA-FFSPNYLQGWR-NALA 315 (322)
T ss_pred cEEEecCCchHHHHH---hCCCeE-EecCCcccHHHHHH----------HHHHHHhhCcceee-ecCHhHHHHHH-HHHH
Confidence 99877 455666665 444443 233322 222222 12223333333333 89899888886 5665
Q ss_pred HHH
Q 009759 494 AAI 496 (526)
Q Consensus 494 ~~l 496 (526)
.+.
T Consensus 316 ~~~ 318 (322)
T PRK02797 316 IAA 318 (322)
T ss_pred Hhh
Confidence 543
No 144
>PLN02562 UDP-glycosyltransferase
Probab=98.44 E-value=0.00099 Score=68.21 Aligned_cols=137 Identities=11% Similarity=0.034 Sum_probs=86.7
Q ss_pred CCcEEEEEeccc---ccccHHHHHHHHHhCCCcEEEE-EeCC---ccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcE
Q 009759 322 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAF-IGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDV 394 (526)
Q Consensus 322 ~~~~i~~vG~l~---~~Kg~~~li~a~~~l~~~~l~i-vG~g---~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv 394 (526)
+..+++.+|+.. ..+-++.+..+++..+. +|+. +..+ ...+.+.+... .|+.+.+|+|+.++ ++..++
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~-~fiW~~~~~~~~~l~~~~~~~~~-~~~~v~~w~PQ~~i---L~h~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGR-PFIWVLNPVWREGLPPGYVERVS-KQGKVVSWAPQLEV---LKHQAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCC-CEEEEEcCCchhhCCHHHHHHhc-cCEEEEecCCHHHH---hCCCcc
Confidence 345677888853 44567888888888854 5443 4321 22223333332 36788899987654 555554
Q ss_pred EEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCC-CceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHH
Q 009759 395 FVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 468 (526)
Q Consensus 395 ~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~-~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~ 468 (526)
..+- ..+.-++++||+.+|+|+|+....+ ....+ .+ -+.|+-+...+.++++++|.+++.+++.+++..
T Consensus 348 ~~fv--tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~---~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a~ 421 (448)
T PLN02562 348 GCYL--THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYI---VDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGERLM 421 (448)
T ss_pred ceEE--ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHH---HHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHHH
Confidence 3222 2344568999999999999886643 22223 22 245565555688999999999998876655543
No 145
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=98.42 E-value=0.0012 Score=67.52 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeCC----c-----cHHHHHHHhcCCCeEEecccChhhHHHHH
Q 009759 321 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDG----P-----YREELEKMFTGMPAVFTGMLLGEELSQAY 389 (526)
Q Consensus 321 ~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~g----~-----~~~~l~~l~~~~~V~~~g~v~~~~l~~~~ 389 (526)
++..+.+.+|+... .+-+..+..+++..+.--+.++..+ . ..+.+++...+ +..+.+|+|+.++ +
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~-~g~v~~w~PQ~~i---L 338 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISG-RGYIVKWAPQKEV---L 338 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccC-CeEEEccCCHHHH---h
Confidence 34566778887743 3446667777777654223333311 1 12233333333 5677799987764 5
Q ss_pred HcCcE--EEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCC-ceeEee-CCCCHHHHHHHHHHhhhCH
Q 009759 390 ASGDV--FVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDG-KIGYLF-NPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 390 ~~aDv--~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~-~~g~~~-~~~d~~~la~ai~~ll~d~ 461 (526)
...++ +| ..+.-++++||+++|+|+|+....+- ...+ .+. +.|+-+ ..-+.++++++|.+++.++
T Consensus 339 ~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 339 SHPAVGGFW----SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYL---ECVWKIGIQVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred CCCccCeee----ecCchhHHHHHHHcCCCEEeccccccCHHHHHHH---HHHhCeeEEeCCcccHHHHHHHHHHHHcCC
Confidence 55444 65 23444689999999999999876432 2222 122 456555 3347899999999999775
Q ss_pred H
Q 009759 462 E 462 (526)
Q Consensus 462 ~ 462 (526)
+
T Consensus 412 ~ 412 (451)
T PLN02410 412 E 412 (451)
T ss_pred c
Confidence 3
No 146
>PLN00414 glycosyltransferase family protein
Probab=98.42 E-value=0.00047 Score=70.36 Aligned_cols=338 Identities=14% Similarity=0.092 Sum_probs=169.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc-----cc-Cceecccc-----ccCCCccc--
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE-----FY-GAKLIGSR-----SFPCPWYQ-- 184 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-----~~-~~~~~~~~-----~~~~~~~~-- 184 (526)
+.+|+++ |++ .-|+-.-+.+|++.|..+|++|+++++......- .. .+....+. .++.....
T Consensus 4 ~~HVvlv----Pfp-aqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~ 78 (446)
T PLN00414 4 KFHAFMY----PWF-GFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETAS 78 (446)
T ss_pred CCEEEEe----cCc-ccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccc
Confidence 3577776 334 3588899999999999999999999975421100 00 11111110 01100000
Q ss_pred cccc-----hh----cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec-------------C----
Q 009759 185 KVPL-----SL----ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT-------------H---- 238 (526)
Q Consensus 185 ~~~~-----~~----~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~-------------~---- 238 (526)
.... .. .....+.+++....||+|+... .. .+.-.++..|+|.++..-. .
T Consensus 79 ~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~---~~-wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~ 154 (446)
T PLN00414 79 DLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF---VH-WVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFP 154 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC---ch-hHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCC
Confidence 0000 00 1112334445556788887752 22 3455678889997653211 0
Q ss_pred Ccccccc----cc-c-----ccccchHHHH--HHHHhhcCcEEEeCChhHHHH-HHHhccc-CCCcEEEeecCCCCCCCC
Q 009759 239 VPVYIPR----YT-F-----SWLVKPMWLV--IKFLHRAADLTLVPSVAIGKD-LEAARVT-AANKIRIWKKGVDSESFH 304 (526)
Q Consensus 239 ~~~~~~~----~~-~-----~~~~~~~~~~--~~~~~~~ad~ii~~S~~~~~~-l~~~~~~-~~~ki~vi~ngid~~~~~ 304 (526)
.+. .+. .. . .......... ....+..+|.++++|-...+. +.+.... ...++..|..-+....-.
T Consensus 155 ~pg-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~ 233 (446)
T PLN00414 155 PPD-YPLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNK 233 (446)
T ss_pred CCC-CCCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccc
Confidence 010 010 00 0 0000000001 112346688999988554332 2222210 012455554433111000
Q ss_pred -CCcccHHHHHhhcCCCCCCcEEEEEeccccc--ccHHHHHHHHHhCCCcEE--EEE---eCC----ccHHHHHHHhcCC
Q 009759 305 -PRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARI--AFI---GDG----PYREELEKMFTGM 372 (526)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~--Kg~~~li~a~~~l~~~~l--~iv---G~g----~~~~~l~~l~~~~ 372 (526)
..........-+....+...+.+.+|++... +.+..+...++.- +..| ++. |.+ ...+.+++..++.
T Consensus 234 ~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s-~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~ 312 (446)
T PLN00414 234 SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELT-GLPFLIAVMPPKGSSTVQEALPEGFEERVKGR 312 (446)
T ss_pred cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHc-CCCeEEEEecCCCcccchhhCChhHHHHhcCC
Confidence 0001112222232234455667788887543 3344444433333 3333 332 211 1234455556666
Q ss_pred CeEEecccChhhHHHHHHcC--cEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCCceeEeeCC--
Q 009759 373 PAVFTGMLLGEELSQAYASG--DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNP-- 444 (526)
Q Consensus 373 ~V~~~g~v~~~~l~~~~~~a--Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~~~g~~~~~-- 444 (526)
+..+.||+|+.++ ++.+ +++| ..+.-++++||+++|+|+|+....+- ...+. +.-+.|+.+..
T Consensus 313 g~vv~~w~PQ~~v---L~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~--~~~g~g~~~~~~~ 383 (446)
T PLN00414 313 GIVWEGWVEQPLI---LSHPSVGCFV----NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLT--EELEVSVKVQRED 383 (446)
T ss_pred CeEEeccCCHHHH---hcCCccceEE----ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCeEEEecccc
Confidence 7888899987664 5555 5566 33445799999999999999876432 22220 22355655531
Q ss_pred ---CCHHHHHHHHHHhhhCH-HHHHHHHHHHHHHH
Q 009759 445 ---GDLDDCLSKLEPLLYNQ-ELRETMGQAARQEM 475 (526)
Q Consensus 445 ---~d~~~la~ai~~ll~d~-~~~~~~~~~a~~~~ 475 (526)
-+.+++++++.+++.++ +..+++.+++++.-
T Consensus 384 ~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 384 SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 37899999999999764 45566666666554
No 147
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.41 E-value=0.00046 Score=65.68 Aligned_cols=222 Identities=9% Similarity=0.035 Sum_probs=134.3
Q ss_pred HHHHHHHHhcCCCEEEECCCchHH-HHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 194 PRIISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
..+....+..+.+-+++|+..... +.+++..+....++.+.+.+..-. . ....+..+....+.+.+.++..+|++
T Consensus 68 ~avi~~a~~~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGaDLY--e-~~~~~k~rlfy~lRr~aq~rvg~V~a- 143 (360)
T PF07429_consen 68 QAVIAKAKADRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGADLY--E-DSRSLKFRLFYFLRRLAQKRVGHVFA- 143 (360)
T ss_pred HHHHHHHhhCccceEEEeccCcHHHHHHHHcCCccccceEEEEeCchhh--c-cccccchhHHHHHHHHHHhhcCeEEE-
Confidence 344444555688889998854333 334444444455566655553221 1 22234455556677888888888876
Q ss_pred ChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecc-cccccHHHHHHHHHhC--C
Q 009759 273 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL--P 349 (526)
Q Consensus 273 S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l-~~~Kg~~~li~a~~~l--~ 349 (526)
.......+.+.++.....+...|.-++......... ...+...-+.+|+- ++.-+.-.+++++++. .
T Consensus 144 t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~----------~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~ 213 (360)
T PF07429_consen 144 TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKN----------KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGD 213 (360)
T ss_pred EcchHHHHHHHcCCCCceEEEcCCCCchhhhccccc----------cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCC
Confidence 566667777776533333434444444332221110 12234555667765 5555677777777654 4
Q ss_pred CcEEEE-EeCC----ccHHHHHHHhcCC----CeEE-ecccChhhHHHHHHcCcEEEecCC-CCCCcHHHHHHHHcCCcE
Q 009759 350 EARIAF-IGDG----PYREELEKMFTGM----PAVF-TGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPV 418 (526)
Q Consensus 350 ~~~l~i-vG~g----~~~~~l~~l~~~~----~V~~-~g~v~~~~l~~~~~~aDv~v~ps~-~e~~~~~ilEAma~G~Pv 418 (526)
++++++ .|-| .+.+++.+...+. ++.+ ..+++.+|..++++.||+.++... -.|+|+. +-.+.+|+||
T Consensus 214 ~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI-~lLl~~G~~v 292 (360)
T PF07429_consen 214 DVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNI-CLLLQLGKKV 292 (360)
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHH-HHHHHcCCeE
Confidence 677766 3322 3555666555543 5665 579999999999999999999865 5788854 4599999999
Q ss_pred EEeCCCCCCcee
Q 009759 419 VGVRAGGIPDII 430 (526)
Q Consensus 419 I~~~~gg~~e~v 430 (526)
+.+.....-..+
T Consensus 293 ~L~~~np~~~~l 304 (360)
T PF07429_consen 293 FLSRDNPFWQDL 304 (360)
T ss_pred EEecCChHHHHH
Confidence 988655444333
No 148
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=98.37 E-value=0.0022 Score=66.13 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeCCc--------cHHHHHHHhcCCCeEEecccChhhHHHHHHc
Q 009759 322 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP--------YREELEKMFTGMPAVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 322 ~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~g~--------~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~ 391 (526)
...+.+.+|++.. .+.+..+.++++..+.--+..++... ..+.+.+.....++.+.+|+|+.+ ++..
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~---vL~h 359 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVA---ILSH 359 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHH---HhcC
Confidence 4456677887643 23477778888877442233444211 112333444455788899998755 4554
Q ss_pred --CcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeC-----CCCHHHHHHHHHHhhh-
Q 009759 392 --GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPLLY- 459 (526)
Q Consensus 392 --aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~-----~~d~~~la~ai~~ll~- 459 (526)
++++| ..+.-++++||+++|+|+|+....+ ....+. +.-+.|+-+. .-+.+++.+++.+++.
T Consensus 360 ~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~--~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~ 433 (477)
T PLN02863 360 RAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLV--DELKVAVRVCEGADTVPDSDELARVFMESVSE 433 (477)
T ss_pred CCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHH--HhhceeEEeccCCCCCcCHHHHHHHHHHHhhc
Confidence 56666 3444568999999999999986543 222220 2224555442 1267899999999883
Q ss_pred CHHHHHH---HHHHHHHHHH-hCCHHHHHHHHHHH
Q 009759 460 NQELRET---MGQAARQEME-KYDWRAATRTIRNE 490 (526)
Q Consensus 460 d~~~~~~---~~~~a~~~~~-~fs~~~~~~~~~~~ 490 (526)
+++.+++ +++.+++.++ .=|.....+++++.
T Consensus 434 ~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~ 468 (477)
T PLN02863 434 NQVERERAKELRRAALDAIKERGSSVKDLDGFVKH 468 (477)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 4443332 3333334442 22333344444433
No 149
>PLN02173 UDP-glucosyl transferase family protein
Probab=98.36 E-value=0.0025 Score=65.02 Aligned_cols=141 Identities=9% Similarity=0.101 Sum_probs=78.2
Q ss_pred CCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeC-C-ccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEe
Q 009759 322 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD-G-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 397 (526)
Q Consensus 322 ~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~-g-~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ 397 (526)
+..+.+.+|+... .+-+..+.+++...+ +-.++-.. . ...+.+.+.....++.+.+|+|+.+ +++..++..+
T Consensus 264 ~svvyvsfGS~~~~~~~~~~ela~gLs~~~-flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~---iL~H~~v~~F 339 (449)
T PLN02173 264 GSVVYIAFGSMAKLSSEQMEEIASAISNFS-YLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQ---VLSNKAIGCF 339 (449)
T ss_pred CceEEEEecccccCCHHHHHHHHHHhcCCC-EEEEEeccchhcccchHHHhhcCCceEEeCCCCHHH---HhCCCccceE
Confidence 3466777887643 223444445543332 22222211 1 1122233333345788899998655 5666664333
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCC-ceeEeeCC------CCHHHHHHHHHHhhhCHHHHHH
Q 009759 398 PSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDG-KIGYLFNP------GDLDDCLSKLEPLLYNQELRET 466 (526)
Q Consensus 398 ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~-~~g~~~~~------~d~~~la~ai~~ll~d~~~~~~ 466 (526)
-+ .+..++++||+++|+|+|+....+- ...+ .+. +.|+-+.. -+.+++++++.+++.+++ .++
T Consensus 340 vt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~-~~~ 413 (449)
T PLN02173 340 MT--HCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYI---QDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK-SKE 413 (449)
T ss_pred Ee--cCccchHHHHHHcCCCEEecCchhcchHHHHHH---HHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh-HHH
Confidence 22 3445799999999999999875432 2223 221 34544421 168999999999997643 234
Q ss_pred HHHHHH
Q 009759 467 MGQAAR 472 (526)
Q Consensus 467 ~~~~a~ 472 (526)
++++++
T Consensus 414 ~r~~a~ 419 (449)
T PLN02173 414 MKENAG 419 (449)
T ss_pred HHHHHH
Confidence 443333
No 150
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.34 E-value=1.3e-06 Score=91.64 Aligned_cols=132 Identities=18% Similarity=0.288 Sum_probs=81.2
Q ss_pred CCCcEEEEEecccc---cccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCc--EE
Q 009759 321 PDKPLIVHVGRLGV---EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGD--VF 395 (526)
Q Consensus 321 ~~~~~i~~vG~l~~---~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aD--v~ 395 (526)
++..+++..|+... .+-.+.++++++++++ +++..-++.....+. .|+.+..|+|+.++ ++... ++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l~-----~n~~~~~W~PQ~~l---L~hp~v~~f 345 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENLP-----KNVLIVKWLPQNDL---LAHPRVKLF 345 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHHH-----TTEEEESS--HHHH---HTSTTEEEE
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCC-ccccccccccccccc-----ceEEEeccccchhh---hhcccceee
Confidence 34556777888742 2236678899999987 666655543222222 38999999987655 65554 45
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCC--CCHHHHHHHHHHhhhCHHHHHHHH
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMG 468 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~--~d~~~la~ai~~ll~d~~~~~~~~ 468 (526)
| ..|.-+++.||+.+|+|+|+-..-| ....+ ++.+.|...+. -+.+++.++|.++++|+..++...
T Consensus 346 i----tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~ 417 (500)
T PF00201_consen 346 I----THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV---EEKGVGVVLDKNDLTEEELRAAIREVLENPSYKENAK 417 (500)
T ss_dssp E----ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH---HHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHH
T ss_pred e----eccccchhhhhhhccCCccCCCCcccCCccceEE---EEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 5 3455679999999999999986543 22233 33445666553 367999999999999986554443
No 151
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=98.32 E-value=0.0061 Score=62.62 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=83.6
Q ss_pred CCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeC---C---------------c-----cHHHHHHHhcCCCeE
Q 009759 321 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD---G---------------P-----YREELEKMFTGMPAV 375 (526)
Q Consensus 321 ~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~---g---------------~-----~~~~l~~l~~~~~V~ 375 (526)
++..+++.+|+... .+.+..+..+++..+.--+..+.. + + ..+.+.+..++.++.
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~v 341 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFV 341 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEE
Confidence 45566778887743 456788888888886533333310 0 0 112334445555799
Q ss_pred EecccChhhHHHHHHcCcE--EEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC----ceecccCCCceeEeeCC----C
Q 009759 376 FTGMLLGEELSQAYASGDV--FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP----DIIPEDQDGKIGYLFNP----G 445 (526)
Q Consensus 376 ~~g~v~~~~l~~~~~~aDv--~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~----e~v~~~~~~~~g~~~~~----~ 445 (526)
+.+|+|+.++ ++...+ +| ..+.-++++||+.+|+|+|+....+-. ..+. +.-+.|..++. -
T Consensus 342 v~~W~PQ~~i---L~h~~vg~Fi----tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~ 412 (481)
T PLN02992 342 VPSWAPQAEI---LAHQAVGGFL----THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLS--DELGIAVRSDDPKEVI 412 (481)
T ss_pred EeecCCHHHH---hCCcccCeeE----ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHH--HHhCeeEEecCCCCcc
Confidence 9999987664 555655 44 234456899999999999998765322 2220 12345555532 3
Q ss_pred CHHHHHHHHHHhhhCH
Q 009759 446 DLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 446 d~~~la~ai~~ll~d~ 461 (526)
+.++++++|.+++.++
T Consensus 413 ~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 413 SRSKIEALVRKVMVEE 428 (481)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 7899999999999763
No 152
>PLN02534 UDP-glycosyltransferase
Probab=98.11 E-value=0.018 Score=59.54 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=75.9
Q ss_pred CCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeCC---c------cHHHHHHHhcCCCeEEecccChhhHHHHHH
Q 009759 322 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDG---P------YREELEKMFTGMPAVFTGMLLGEELSQAYA 390 (526)
Q Consensus 322 ~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~g---~------~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~ 390 (526)
...+++.+|+... .+-+..+..+++...+--+.++..+ . ..+.+.+.....++.+.||+|+.+ ++.
T Consensus 283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~---iL~ 359 (491)
T PLN02534 283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVL---ILS 359 (491)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHH---Hhc
Confidence 4556677787642 3345556677777755333333321 1 112233333445788889998754 566
Q ss_pred cCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC----ceecccCCCceeEeeC---------------CCCHHHHH
Q 009759 391 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP----DIIPEDQDGKIGYLFN---------------PGDLDDCL 451 (526)
Q Consensus 391 ~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~----e~v~~~~~~~~g~~~~---------------~~d~~~la 451 (526)
..++..+- ..+..++++||+++|+|+|+....+-. ..+. +.-+.|+-+. .-+.++++
T Consensus 360 h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~--e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~ 435 (491)
T PLN02534 360 HPAIGGFL--THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIV--EVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVE 435 (491)
T ss_pred CCccceEE--ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHH--HhhcceEEecccccccccccccccCccCHHHHH
Confidence 67763222 345567999999999999998764311 1110 1111222110 12688999
Q ss_pred HHHHHhhh
Q 009759 452 SKLEPLLY 459 (526)
Q Consensus 452 ~ai~~ll~ 459 (526)
++|.+++.
T Consensus 436 ~~v~~~m~ 443 (491)
T PLN02534 436 KAVKTLMD 443 (491)
T ss_pred HHHHHHhc
Confidence 99999996
No 153
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=98.04 E-value=0.01 Score=54.45 Aligned_cols=299 Identities=16% Similarity=0.120 Sum_probs=145.5
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHh-cCCCEEEECC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVAR-FKPDIIHASS 212 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~pDiV~~~~ 212 (526)
.|+.+...++-.++.+.|+++.++.............+ ... +.........+.+.+++ ..+||+++++
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~---~~~--------~si~k~~~~e~de~v~~vN~yDI~m~nS 69 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHD---SKS--------FSIPKYLAKEYDETVKKVNDYDIVMFNS 69 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS----TT--------TEEEE-TTTHHHHHHHHHTSSSEEEEEE
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccccCCccccc---cce--------eeeehhhHHHHHHHHHHhhccCEEEEec
Confidence 37788889999999999999999987653221111100 000 11111112233444443 2899999986
Q ss_pred CchHH-------HHHHHHHHhc-CCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhH--HHHHH-
Q 009759 213 PGIMV-------FGALIIAKLL-CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI--GKDLE- 281 (526)
Q Consensus 213 ~~~~~-------~~~~~~~~~~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~--~~~l~- 281 (526)
.+... ..--++.+.. .+++|...|++......+.. ....+++.+|.|++.+... .+.+.
T Consensus 70 vPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~rn~----------~le~~m~~~DvIfshs~~g~f~kv~m~ 139 (355)
T PF11440_consen 70 VPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDHNKLSIDRNP----------YLEGTMNEMDVIFSHSDNGWFSKVLMK 139 (355)
T ss_dssp --BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHTTBS----------SHHHHHHH-SEEEES-TTSHHHHTHHH
T ss_pred ccCchHHHHHHHHHHHHHHhccccceeEEEeeccceeeccccc----------cHHHHHHhhcEEEeccccchHHHHHHH
Confidence 43211 1111122222 35578889997543332221 1445788999999987542 22222
Q ss_pred Hhccc---CCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEE---EEEecccccccHHHHHHHHHhC---CCcE
Q 009759 282 AARVT---AANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI---VHVGRLGVEKSLDFLKRVMDRL---PEAR 352 (526)
Q Consensus 282 ~~~~~---~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~vG~l~~~Kg~~~li~a~~~l---~~~~ 352 (526)
.+.+. ..+++...|.... |.|+..-...|..+.. +...+.. .|+||....||...+++.-+.. ++..
T Consensus 140 ~l~Ps~~~l~~~i~~~p~v~n---fqpp~~i~~~Rstywk-d~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~ 215 (355)
T PF11440_consen 140 ELLPSKVSLFDRIKKFPMVFN---FQPPMDINKYRSTYWK-DVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFK 215 (355)
T ss_dssp HHS-SS--SSS-------EEE-------B-HHHHHHHH----GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-E
T ss_pred hhccccCchhhhhhhcceeee---cCCcccHHHHHHHHhh-hhHhhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchh
Confidence 33321 1123333332221 3344333444444432 2333444 7999999999999999877665 4677
Q ss_pred EEEEeCCccHHHHHHHhc-------------------CCCeEEecccChhhHHHHHHcCcEEEecCC------CCCCcHH
Q 009759 353 IAFIGDGPYREELEKMFT-------------------GMPAVFTGMLLGEELSQAYASGDVFVMPSE------SETLGLV 407 (526)
Q Consensus 353 l~ivG~g~~~~~l~~l~~-------------------~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~------~e~~~~~ 407 (526)
-++-|-......+.-+-. ...+.++|..=.+|..+.|+.+-+...-+. .+.+-.+
T Consensus 216 t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt 295 (355)
T PF11440_consen 216 TIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYT 295 (355)
T ss_dssp EEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HH
T ss_pred HHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhh
Confidence 788783221122111111 112778887777899999999888765543 2457789
Q ss_pred HHHHHHcCCcEE-EeCCCCCC-------ceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 408 VLEAMSSGIPVV-GVRAGGIP-------DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 408 ilEAma~G~PvI-~~~~gg~~-------e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
.+|..|||...| -...|... .++ .+....+.++..|.++-.+.|.++.++
T Consensus 296 ~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~---~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 296 QIELIAVGTIPVFDKSWGENNRFTLDGTRYI---DHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp HHHHHHCTSEEEEEHHHHHHSB-TTTSSBGG---SS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred eeeeeeeceeeeeeccccccceeeecCceee---ccCcceeEeccchHHHHHHHHHHHhcc
Confidence 999999996555 44444221 223 334445667888888888888887655
No 154
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.97 E-value=0.029 Score=57.39 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCcEEEEEeccc--ccccHHHHHHHHHhCCCcEEEEEeCC---------cc------HHHHHHHhcCCCeEEecccChhh
Q 009759 322 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDG---------PY------REELEKMFTGMPAVFTGMLLGEE 384 (526)
Q Consensus 322 ~~~~i~~vG~l~--~~Kg~~~li~a~~~l~~~~l~ivG~g---------~~------~~~l~~l~~~~~V~~~g~v~~~~ 384 (526)
+..+.+.+|++. ..+.++.+..+++..+.--+.++... .. .+.+.+.. ..+..+.+|+|+.+
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~ 339 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIE 339 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHH
Confidence 456677788763 34567888888888865333334321 10 01122222 23567789998665
Q ss_pred HHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCC-CceeEeeC-----CCCHHHHHHHH
Q 009759 385 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQD-GKIGYLFN-----PGDLDDCLSKL 454 (526)
Q Consensus 385 l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~-~~~g~~~~-----~~d~~~la~ai 454 (526)
+++..++..+-+ .+.-++++||+.+|+|+|+....+- ...+ .+ -+.|+-+. .-+.++++++|
T Consensus 340 ---iL~h~~vg~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~~~e~l~~av 411 (455)
T PLN02152 340 ---VLRHRAVGCFVT--HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLL---EEIWKTGVRVRENSEGLVERGEIRRCL 411 (455)
T ss_pred ---HhCCcccceEEe--eCCcccHHHHHHcCCCEEeccccccchHHHHHH---HHHhCceEEeecCcCCcCcHHHHHHHH
Confidence 566676533333 3445689999999999998865431 1222 11 02333331 12689999999
Q ss_pred HHhhhCH
Q 009759 455 EPLLYNQ 461 (526)
Q Consensus 455 ~~ll~d~ 461 (526)
.+++.++
T Consensus 412 ~~vm~~~ 418 (455)
T PLN02152 412 EAVMEEK 418 (455)
T ss_pred HHHHhhh
Confidence 9999754
No 155
>PLN00164 glucosyltransferase; Provisional
Probab=97.96 E-value=0.034 Score=57.59 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=84.6
Q ss_pred CCcEEEEEecccc--cccHHHHHHHHHhCCCcEEE-EEeCCc---------------cHHHHHHHhcCCCeEEecccChh
Q 009759 322 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDGP---------------YREELEKMFTGMPAVFTGMLLGE 383 (526)
Q Consensus 322 ~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~-ivG~g~---------------~~~~l~~l~~~~~V~~~g~v~~~ 383 (526)
...+.+.+|+... .+.+..+..+++..+. .|+ ++.... ..+.+.+..++.++.+.+|+|+.
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~-~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~ 350 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGH-RFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQK 350 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCC-CEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHH
Confidence 3456677787522 2347777888877643 544 333211 11233344445568888999865
Q ss_pred hHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCCceeEeeCC-------CCHHHHHH
Q 009759 384 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNP-------GDLDDCLS 452 (526)
Q Consensus 384 ~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~~~g~~~~~-------~d~~~la~ 452 (526)
+ ++..+++..+-+ .+.-++++||+++|+|+|+...-+- ...+. +.-+.|+.+.. -+.+++++
T Consensus 351 ~---iL~h~~vg~fvt--H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvG~~~~~~~~~~~~~~~e~l~~ 423 (480)
T PLN00164 351 E---ILAHAAVGGFVT--HCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELV--ADMGVAVAMKVDRKRDNFVEAAELER 423 (480)
T ss_pred H---HhcCcccCeEEe--ecccchHHHHHHcCCCEEeCCccccchhHHHHHH--HHhCeEEEeccccccCCcCcHHHHHH
Confidence 5 466666433222 2334689999999999999865432 21220 22355655431 26799999
Q ss_pred HHHHhhhCHH-HHHHHHHHHHHH
Q 009759 453 KLEPLLYNQE-LRETMGQAARQE 474 (526)
Q Consensus 453 ai~~ll~d~~-~~~~~~~~a~~~ 474 (526)
+|.+++.+++ ..+++++++++.
T Consensus 424 av~~vm~~~~~~~~~~r~~a~~~ 446 (480)
T PLN00164 424 AVRSLMGGGEEEGRKAREKAAEM 446 (480)
T ss_pred HHHHHhcCCchhHHHHHHHHHHH
Confidence 9999997643 234444444443
No 156
>PLN03015 UDP-glucosyl transferase
Probab=97.91 E-value=0.038 Score=56.59 Aligned_cols=186 Identities=14% Similarity=0.048 Sum_probs=98.1
Q ss_pred hhcCcEEEeCChhHHHH-HHHhcccC-------CCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccc
Q 009759 263 HRAADLTLVPSVAIGKD-LEAARVTA-------ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV 334 (526)
Q Consensus 263 ~~~ad~ii~~S~~~~~~-l~~~~~~~-------~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~ 334 (526)
...++.++++|-...+. +.+..... ..++..|..-+... .. .....+...-+....++..+.+.+|+...
T Consensus 202 ~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~-~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~ 279 (470)
T PLN03015 202 VPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTN-VH-VEKRNSIFEWLDKQGERSVVYVCLGSGGT 279 (470)
T ss_pred cccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCc-cc-ccchHHHHHHHHhCCCCCEEEEECCcCCc
Confidence 56799999988654432 22111100 12344444333111 11 11112222223222344556677787733
Q ss_pred --cccHHHHHHHHHhCCCcEEEEEeC-----------Cc-----cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcE--
Q 009759 335 --EKSLDFLKRVMDRLPEARIAFIGD-----------GP-----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDV-- 394 (526)
Q Consensus 335 --~Kg~~~li~a~~~l~~~~l~ivG~-----------g~-----~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv-- 394 (526)
...+..+..+++..+.--+.++.. .. ..+.+.+..++.++.+.+|+|+.++. +...+
T Consensus 280 ~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL---~h~~vg~ 356 (470)
T PLN03015 280 LTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEIL---SHRSIGG 356 (470)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHh---ccCccCe
Confidence 345777788888876522233321 00 11233344444467888999877654 44443
Q ss_pred EEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC----ceecccCCCceeEeeC------CCCHHHHHHHHHHhhh
Q 009759 395 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP----DIIPEDQDGKIGYLFN------PGDLDDCLSKLEPLLY 459 (526)
Q Consensus 395 ~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~----e~v~~~~~~~~g~~~~------~~d~~~la~ai~~ll~ 459 (526)
+| ..+.-++++||+.+|+|+|+....+-. ..+. +.-+.|+-+. .-+.++++++|.+++.
T Consensus 357 fv----tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~--~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 357 FL----SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT--EEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred EE----ecCCchhHHHHHHcCCCEEecccccchHHHHHHHH--HHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 44 233346899999999999998764311 1110 1223444332 1367899999999995
No 157
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.87 E-value=6.3e-07 Score=78.99 Aligned_cols=110 Identities=17% Similarity=0.265 Sum_probs=68.7
Q ss_pred cEE-EEEeCCccHHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC-
Q 009759 351 ARI-AFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI- 426 (526)
Q Consensus 351 ~~l-~ivG~g~~~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~- 426 (526)
+++ +++|...+.+.... ... .+|.+.+++ +++.++|+.||++| .-+.++++.|++++|+|.|.-...+.
T Consensus 32 ~~viv~~G~~~~~~~~~~-~~~~~~~v~~~~~~--~~m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~ 104 (167)
T PF04101_consen 32 IQVIVQTGKNNYEELKIK-VENFNPNVKVFGFV--DNMAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAA 104 (167)
T ss_dssp CCCCCCCTTCECHHHCCC-HCCTTCCCEEECSS--SSHHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-
T ss_pred cEEEEEECCCcHHHHHHH-HhccCCcEEEEech--hhHHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcc
Confidence 444 44565544443333 333 479999998 57999999999999 33456899999999999987766551
Q ss_pred -------CceecccCCCceeEeeC--CCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 009759 427 -------PDIIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRETMGQA 470 (526)
Q Consensus 427 -------~e~v~~~~~~~~g~~~~--~~d~~~la~ai~~ll~d~~~~~~~~~~ 470 (526)
...+ .....|..+. ..+++.|.++|..++.++.....+.++
T Consensus 105 ~~~q~~na~~~---~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 105 DNHQEENAKEL---AKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp T-CHHHHHHHH---HHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred hHHHHHHHHHH---HHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 1112 2222333333 234688999999999998876665443
No 158
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=0.0075 Score=54.83 Aligned_cols=257 Identities=14% Similarity=0.088 Sum_probs=135.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||..+++ ...|....+..|++.|...-+.|.++..+. ..... ..-...++.++.+. .+.....
T Consensus 1 ~ki~aisD-----~RtGnt~QaiaLa~~l~r~eyttk~l~~~~--l~~lP---~~wl~~yp~~~~~~------l~~~~~~ 64 (329)
T COG3660 1 MKIWAISD-----GRTGNTHQAIALAEQLTRSEYTTKLLEYNN--LAKLP---NFWLAYYPIHILRE------LFGPRLS 64 (329)
T ss_pred CceEEeec-----CCCccHHHHHHHHHHhhccceEEEEeeccc--cccCc---hhhhhcCccHhHHH------hhcCccc
Confidence 78877765 457888999999999987445555554431 11000 00000111111000 0001111
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
...+..||+++..+-..... +..+++..+-+.++.+.+..- =++..|.+|++-++..+
T Consensus 65 r~p~~~Pdl~I~aGrrta~l-~~~lkk~~~~~~vVqI~~Prl---------------------p~~~fDlvivp~HD~~~ 122 (329)
T COG3660 65 RKPEQRPDLIITAGRRTAPL-AFYLKKKFGGIKVVQIQDPRL---------------------PYNHFDLVIVPYHDWRE 122 (329)
T ss_pred cCccCCCceEEecccchhHH-HHHHHHhcCCceEEEeeCCCC---------------------CcccceEEeccchhhhh
Confidence 11234799999987655444 444555555565655555211 12457999988887776
Q ss_pred HHHHhcccCCCcEEEe---ecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccH-----HHHHHHHH-hC-
Q 009759 279 DLEAARVTAANKIRIW---KKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL-----DFLKRVMD-RL- 348 (526)
Q Consensus 279 ~l~~~~~~~~~ki~vi---~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~-----~~li~a~~-~l- 348 (526)
.....+ .++.-+ +|.|......+ ..+....+. .....++-++||.-.+.-.+ ..+..++. .+
T Consensus 123 ~~s~~~----~Nilpi~Gs~h~Vt~~~lAa---~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~ 194 (329)
T COG3660 123 ELSDQG----PNILPINGSPHNVTSQRLAA---LREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILE 194 (329)
T ss_pred hhhccC----CceeeccCCCCcccHHHhhh---hHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 633322 243332 22222222111 112222222 34567778899976554332 22333332 22
Q ss_pred -CCcEEEEEeCCccHHHHHHHhcCC-----CeEEecc-cChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 349 -PEARIAFIGDGPYREELEKMFTGM-----PAVFTGM-LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 349 -~~~~l~ivG~g~~~~~l~~l~~~~-----~V~~~g~-v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
....|++--+....+.++..++.. .+.+-+. ....-..+++++||.+|..... =....||.+.|+||-+-
T Consensus 195 ~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDS---inM~sEAasTgkPv~~~ 271 (329)
T COG3660 195 NQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADS---INMCSEAASTGKPVFIL 271 (329)
T ss_pred hCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecch---hhhhHHHhccCCCeEEE
Confidence 356777766655566666666542 2333222 1223567899999999976442 13457999999999875
Q ss_pred CCC
Q 009759 422 RAG 424 (526)
Q Consensus 422 ~~g 424 (526)
...
T Consensus 272 ~~~ 274 (329)
T COG3660 272 EPP 274 (329)
T ss_pred ecC
Confidence 433
No 159
>PLN02555 limonoid glucosyltransferase
Probab=97.81 E-value=0.058 Score=55.62 Aligned_cols=141 Identities=17% Similarity=0.099 Sum_probs=81.4
Q ss_pred CcEEEEEeccc--ccccHHHHHHHHHhCCCcEEEEE-eCC---------ccHHHHHHHhcCCCeEEecccChhhHHHHHH
Q 009759 323 KPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFI-GDG---------PYREELEKMFTGMPAVFTGMLLGEELSQAYA 390 (526)
Q Consensus 323 ~~~i~~vG~l~--~~Kg~~~li~a~~~l~~~~l~iv-G~g---------~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~ 390 (526)
..+.+.+|++. ..+.+..++.+++..+ .+|+.+ ... ...+.+.+.. ..++.+.+|+|+.++... .
T Consensus 278 sVvyvsfGS~~~~~~~q~~ela~~l~~~~-~~flW~~~~~~~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H-~ 354 (480)
T PLN02555 278 SVVYISFGTVVYLKQEQIDEIAYGVLNSG-VSFLWVMRPPHKDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAH-P 354 (480)
T ss_pred ceeEEEeccccCCCHHHHHHHHHHHHhcC-CeEEEEEecCcccccchhhcCChhhhhhc-CCceEEEecCCHHHHhCC-C
Confidence 45667788763 2345666777777664 465543 311 0111222222 236778899987654322 4
Q ss_pred cCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCC-ceeEeeC-------CCCHHHHHHHHHHhh
Q 009759 391 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLFN-------PGDLDDCLSKLEPLL 458 (526)
Q Consensus 391 ~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~-~~g~~~~-------~~d~~~la~ai~~ll 458 (526)
++.++| ..+.-++++||+.+|+|+|+...-+ ....+ .+. +.|+-+. .-+.++++++|.+++
T Consensus 355 ~v~~Fv----tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~---~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm 427 (480)
T PLN02555 355 SVACFV----THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL---VDVFKTGVRLCRGEAENKLITREEVAECLLEAT 427 (480)
T ss_pred ccCeEE----ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH---HHHhCceEEccCCccccCcCcHHHHHHHHHHHh
Confidence 456666 3344568999999999999987643 11222 122 4555441 126789999999999
Q ss_pred hCHHHHHHHHHHHHHH
Q 009759 459 YNQELRETMGQAARQE 474 (526)
Q Consensus 459 ~d~~~~~~~~~~a~~~ 474 (526)
.+++ .+++++++++.
T Consensus 428 ~~~~-g~~~r~ra~~l 442 (480)
T PLN02555 428 VGEK-AAELKQNALKW 442 (480)
T ss_pred cCch-HHHHHHHHHHH
Confidence 7532 34444444443
No 160
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.80 E-value=0.012 Score=57.21 Aligned_cols=247 Identities=17% Similarity=0.172 Sum_probs=136.1
Q ss_pred CccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEE
Q 009759 131 SYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHA 210 (526)
Q Consensus 131 ~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~ 210 (526)
...-|-+..+..+.+.|. .|.++++++.++.......+++... ......+.+.++ +.|++++
T Consensus 9 ~~N~GDe~~l~~~l~~l~-~~~~~~v~s~~p~~~~~~~~v~~~~---------------r~~~~~~~~~l~--~~D~vI~ 70 (298)
T TIGR03609 9 FGNLGDEALLAALLRELP-PGVEPTVLSNDPAETAKLYGVEAVN---------------RRSLLAVLRALR--RADVVIW 70 (298)
T ss_pred CCCcchHHHHHHHHHhcC-CCCeEEEecCChHHHHhhcCceEEc---------------cCCHHHHHHHHH--HCCEEEE
Confidence 345677777777877775 5788888876654333323322111 011234555555 6688877
Q ss_pred CCCchH----------H-HHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHH
Q 009759 211 SSPGIM----------V-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 279 (526)
Q Consensus 211 ~~~~~~----------~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~ 279 (526)
.+...+ . +....+++..++|+++.-.+..|... ...+.+.+.+++.+|.+.+=.+...+.
T Consensus 71 gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~---------~~~r~~~~~~l~~~~~i~vRD~~S~~~ 141 (298)
T TIGR03609 71 GGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRR---------RLSRWLVRRVLRGCRAISVRDAASYRL 141 (298)
T ss_pred CCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCC---------HHHHHHHHHHHccCCEEEEeCHHHHHH
Confidence 532111 1 11234567789999887777654321 122355677889999999977777777
Q ss_pred HHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccc---ccccHHHHHHHHHhC---CCcEE
Q 009759 280 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG---VEKSLDFLKRVMDRL---PEARI 353 (526)
Q Consensus 280 l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~---~~Kg~~~li~a~~~l---~~~~l 353 (526)
+++.+. ++.+.+ |+...-+...... ....++..|++.-+-. ....++.+.+++..+ .+.++
T Consensus 142 l~~~g~----~i~~~~---D~a~~l~~~~~~~------~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v 208 (298)
T TIGR03609 142 LKRLGI----PAELAA---DPVWLLPPEPWPG------GEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFV 208 (298)
T ss_pred HHHhCC----CceEeC---ChhhhCCCCcccc------cccCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeE
Confidence 776543 455444 3332221111000 0112334454443321 122345566666554 35666
Q ss_pred EEEeC--CccHHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 354 AFIGD--GPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 354 ~ivG~--g~~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+++.. ..+.+..+++.... +..+....+.+|+..++++||++|--.. -..+=|+.+|+|+|+-.
T Consensus 209 ~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-----H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 209 LFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-----HALILAAAAGVPFVALS 276 (298)
T ss_pred EEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-----HHHHHHHHcCCCEEEee
Confidence 66553 23333333333322 2223355566899999999999884432 24566999999999764
No 161
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.79 E-value=0.017 Score=57.49 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=61.3
Q ss_pred CCcEEEEEecc-ccccc--HHHHHHHHHhC--CCcEEEEEeCCccHHHHHHHhcCC------C-eEEecccChhhHHHHH
Q 009759 322 DKPLIVHVGRL-GVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM------P-AVFTGMLLGEELSQAY 389 (526)
Q Consensus 322 ~~~~i~~vG~l-~~~Kg--~~~li~a~~~l--~~~~l~ivG~g~~~~~l~~l~~~~------~-V~~~g~v~~~~l~~~~ 389 (526)
+..+++..|.- .+.|. .+.+.++++.+ .+++++++|...+.+..++..+.. + +.+.|..+-.++..++
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali 259 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILI 259 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHH
Confidence 34455566653 35554 33444444444 368899999765555555543322 1 4566777778999999
Q ss_pred HcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 390 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 390 ~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
+.||++|..- .+.+-=|.|.|+|+|+-
T Consensus 260 ~~a~l~I~nD-----TGp~HlAaA~g~P~val 286 (348)
T PRK10916 260 AACKAIVTND-----SGLMHVAAALNRPLVAL 286 (348)
T ss_pred HhCCEEEecC-----ChHHHHHHHhCCCEEEE
Confidence 9999999543 23455599999999975
No 162
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.0073 Score=59.54 Aligned_cols=266 Identities=14% Similarity=0.117 Sum_probs=136.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCc--cccCceeccccccCCCccccccchhccc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQ--EFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.|||+++-.. .=|--.....+.+.|++.. .++++++......- ....+. .+..... .+....+...
T Consensus 1 ~~kIliir~~-----~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~--~vi~~~~---~~~~~~~~~~ 70 (334)
T COG0859 1 MMKILVIRLS-----KLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEID--KVIIIDK---KKKGLGLKER 70 (334)
T ss_pred CceEEEEecc-----chhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhh--hhccccc---cccccchHHH
Confidence 3899998642 2355566788899999985 77777776543111 111111 1111010 0000234455
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
..+.+.+++.++|+|+.-....- ...+....++|..+...... ....+....... .-....
T Consensus 71 ~~l~~~lr~~~yD~vidl~~~~k---sa~l~~~~~~~~r~g~~~~~--------------~r~~~~~~~~~~--~~~~~~ 131 (334)
T COG0859 71 LALLRTLRKERYDAVIDLQGLLK---SALLALLLGIPFRIGFDKKS--------------ARELLLNKFYPR--LDKPEG 131 (334)
T ss_pred HHHHHHhhccCCCEEEECcccHH---HHHHHHHhCCCccccccccc--------------chhHHHHHhhhc--cCcccc
Confidence 67888899889999987653222 22233455666544322100 000112222222 222223
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEe-ccccccc--HHHHHHHHHhC--
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG-RLGVEKS--LDFLKRVMDRL-- 348 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG-~l~~~Kg--~~~li~a~~~l-- 348 (526)
+...+.+....... .....+ .....+............+.. ...+.+++..| +....|. .+.+.+.++.+
T Consensus 132 ~~~~~~~~~l~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~ 206 (334)
T COG0859 132 QHVVERYLALLEDL--GLYPPP--EPQLDFPLPRPPIELAKNLAK-FDRPYIVINPGASRGSAKRWPLEHYAELAELLIA 206 (334)
T ss_pred hhHHHHHHHHHHHh--cCCCCC--CCccCcccccCHHHHHHHHHh-cCCCeEEEeccccccccCCCCHHHHHHHHHHHHH
Confidence 33334333332100 000000 111111111111111111111 11345566677 5546665 33444444444
Q ss_pred CCcEEEEEeCCccHHHHHHHhcCCC--eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 349 PEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 349 ~~~~l~ivG~g~~~~~l~~l~~~~~--V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
...++++.|...+.+..+++.+..+ +.+.|..+-+++..+++.||++|.+.. +.+-=|.|.|+|+|+--
T Consensus 207 ~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DS-----g~~HlAaA~~~P~I~iy 277 (334)
T COG0859 207 KGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDS-----GPMHLAAALGTPTIALY 277 (334)
T ss_pred CCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEEEccCC-----hHHHHHHHcCCCEEEEE
Confidence 2478999998766666666666553 238888888999999999999996542 34555999999999764
No 163
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.72 E-value=0.006 Score=60.31 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCcEEEEEec-cccccc--HHHHHHHHHhC--CCcEEEEEeCCccHHHHHHHhcCC--C-eEEecccChhhHHHHHHcCc
Q 009759 322 DKPLIVHVGR-LGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM--P-AVFTGMLLGEELSQAYASGD 393 (526)
Q Consensus 322 ~~~~i~~vG~-l~~~Kg--~~~li~a~~~l--~~~~l~ivG~g~~~~~l~~l~~~~--~-V~~~g~v~~~~l~~~~~~aD 393 (526)
+..+++..|. ..+.|. .+.+.++++.+ .+.+++++|...+.+..+++.... + +.+.|..+-.++..+++.||
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~ 253 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAK 253 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCC
Confidence 3445566665 335554 33444554444 368899999766655555544332 2 34678777789999999999
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 394 VFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 394 v~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
++|..- .+.+-=|.|.|+|+|+-
T Consensus 254 l~I~~D-----SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 254 AVVTND-----SGLMHVAAALNRPLVAL 276 (334)
T ss_pred EEEeeC-----CHHHHHHHHcCCCEEEE
Confidence 999543 23455588999999975
No 164
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.71 E-value=0.0053 Score=58.95 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCC---C-eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHH
Q 009759 338 LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM---P-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 413 (526)
Q Consensus 338 ~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~---~-V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma 413 (526)
+..+++.+..- +++++++|...+.+..+++.+.. + +.+.|..+-.|+..+++.||++|.+- ...+--|.+
T Consensus 142 ~~~l~~~l~~~-~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~D-----sg~~HlA~a 215 (279)
T cd03789 142 FAALADRLLAR-GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTND-----SGPMHLAAA 215 (279)
T ss_pred HHHHHHHHHHC-CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeC-----CHHHHHHHH
Confidence 34444444433 78999999766655555554431 2 45677777789999999999999653 234445679
Q ss_pred cCCcEEEeCC
Q 009759 414 SGIPVVGVRA 423 (526)
Q Consensus 414 ~G~PvI~~~~ 423 (526)
.|+|+|+--.
T Consensus 216 ~~~p~i~l~g 225 (279)
T cd03789 216 LGTPTVALFG 225 (279)
T ss_pred cCCCEEEEEC
Confidence 9999987643
No 165
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=97.67 E-value=0.067 Score=52.46 Aligned_cols=313 Identities=16% Similarity=0.165 Sum_probs=155.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCCCcccc-ccchhc----
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQK-VPLSLA---- 191 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 191 (526)
||++++... . ....|-+..+..+.+.|+++- .+|.+++..+.... .......-+......... .....+
T Consensus 1 m~~~L~g~~-g-~gN~Gdeail~all~~l~~~~~~~~~~~~~~~p~~i~--~p~~~~~~p~~~~~~l~g~~k~v~R~~~k 76 (385)
T COG2327 1 MKALLLGYY-G-FGNIGDEAILKALLDMLRRLNPDAKVLVMGRRPPVIV--DPVFLSANPEGSAAGLNGRVKSVLRRRLK 76 (385)
T ss_pred CeeEEEeee-c-CCCcccHHHHHHHHHHHHhhCcccceeeeecCCcccc--cceeecCCcccCchhhhHHHHHHHHHhhc
Confidence 678777653 2 445678888899999998764 56666655442111 000000000000000000 000000
Q ss_pred --ccHHHHHHHHhcCCCEEEECCCc----------hHHHH-HHHHHHhcCCCEEEEEecCCcccccccccccccchHHHH
Q 009759 192 --LSPRIISEVARFKPDIIHASSPG----------IMVFG-ALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLV 258 (526)
Q Consensus 192 --~~~~l~~~l~~~~pDiV~~~~~~----------~~~~~-~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 258 (526)
....+...+. +.|++++.+.. ...+. .+.+++..++|+++.-|+..|... ...+++
T Consensus 77 ~~~~~~il~~l~--~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~~~---------~~s~~~ 145 (385)
T COG2327 77 HPGLVSILSALG--KADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPLKH---------PLSRQL 145 (385)
T ss_pred cccHHHHHHHhh--hCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCCCccC---------HHHHHH
Confidence 0011222233 77888774321 11222 256778899999999988665432 223466
Q ss_pred HHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccccccc-
Q 009759 259 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS- 337 (526)
Q Consensus 259 ~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg- 337 (526)
....++.+..+++=.+.-.+.+...+. +..... |+.+.-+......... ......+.+.+..-.+.+.+.
T Consensus 146 ~~~~~~~~s~i~vRD~~S~~llk~~gi----~a~l~~---D~Af~L~~~~~~~~~~--~~~~~~~~~~i~lr~~~~~~t~ 216 (385)
T COG2327 146 LNYVLGGCSAISVRDPVSYELLKQLGI----NARLVT---DPAFLLPASSQNATAS--DVEAREKTVAITLRGLHPDNTA 216 (385)
T ss_pred HHHHhcCCcEEEEecHHhHHHHHHcCC----CeEeec---Ccceeccccccccccc--ccccccceEEEEecccCCchhh
Confidence 777888899999888888888886653 222222 4443332211110000 001222333344434433222
Q ss_pred -------HHHHHHHHHhCC--C--cEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCC
Q 009759 338 -------LDFLKRVMDRLP--E--ARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESE 402 (526)
Q Consensus 338 -------~~~li~a~~~l~--~--~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e 402 (526)
+..+++-++... . ++++-.+...+......+.... ++.+..--..+++...+++||++|-.-
T Consensus 217 ~~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R--- 293 (385)
T COG2327 217 QRSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMR--- 293 (385)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeeh---
Confidence 223333332221 2 2333333333333333333222 444433222367778999999998332
Q ss_pred CCcHHHHHHHHcCCcEEEeCCC----CCCceecccCCCceeEe--eCCCCHHHHHHHHHHhhhC-HHHHH
Q 009759 403 TLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYL--FNPGDLDDCLSKLEPLLYN-QELRE 465 (526)
Q Consensus 403 ~~~~~ilEAma~G~PvI~~~~g----g~~e~v~~~~~~~~g~~--~~~~d~~~la~ai~~ll~d-~~~~~ 465 (526)
+ -.++=|++.|+|+|+-... ++.+.+ +-.++. ..+.|.+.+.+...+.+.+ ++.++
T Consensus 294 -~-HsaI~al~~g~p~i~i~Y~~K~~~l~~~~-----gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~ 356 (385)
T COG2327 294 -L-HSAIMALAFGVPAIAIAYDPKVRGLMQDL-----GLPGFAIDIDPLDAEILSAVVLERLTKLDELRE 356 (385)
T ss_pred -h-HHHHHHHhcCCCeEEEeecHHHHHHHHHc-----CCCcccccCCCCchHHHHHHHHHHHhccHHHHh
Confidence 2 2456699999999987653 232322 223333 3455777888877777663 44333
No 166
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=97.60 E-value=0.00052 Score=64.80 Aligned_cols=81 Identities=15% Similarity=0.023 Sum_probs=57.4
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccc------c------ccccccccchHHHHHHHHhhcCcEEEe
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI------P------RYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
+.|++|+.+.++.++.+.+.+...|+|++++.|+.+.... . ......+.+.+..+-+..++.||.|++
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I~~ 251 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRITP 251 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCeecc
Confidence 5699999999999998999999999999999999643210 0 011112223344566778999999999
Q ss_pred CChhHHHHHHHhc
Q 009759 272 PSVAIGKDLEAAR 284 (526)
Q Consensus 272 ~S~~~~~~l~~~~ 284 (526)
..+..++.=.+.|
T Consensus 252 l~~~n~~~q~~~G 264 (268)
T PF11997_consen 252 LYEYNREWQIELG 264 (268)
T ss_pred cchhhHHHHHHhC
Confidence 9997555444433
No 167
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=97.44 E-value=0.0037 Score=63.52 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=100.1
Q ss_pred cEEEEEecc-cccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC-C
Q 009759 324 PLIVHVGRL-GVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-S 401 (526)
Q Consensus 324 ~~i~~vG~l-~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~-~ 401 (526)
...+..|.- .-++|-+..++++.+.-+++-.|.+.......+-. -|.-+|.++.+|+..+++.+.++|-... +
T Consensus 278 ~~AlVyGK~~~~w~~k~~~l~~l~~~~eih~tV~~~~~~~~~~P~-----~V~NHG~l~~~ef~~lL~~akvfiGlGfP~ 352 (559)
T PF15024_consen 278 NQALVYGKERYMWKGKEKYLDVLHKYMEIHGTVYDEPQRPPNVPS-----FVKNHGILSGDEFQQLLRKAKVFIGLGFPY 352 (559)
T ss_pred ceeEEEccchhhhcCcHHHHHHHHhhcEEEEEeccCCCCCcccch-----hhhhcCcCCHHHHHHHHHhhhEeeecCCCC
Confidence 344444543 44678888888887765666666553321112221 2667999999999999999999993322 2
Q ss_pred CCCcHHHHHHHHcCCcEEEeCCCCC---------------Ccee------cccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 402 ETLGLVVLEAMSSGIPVVGVRAGGI---------------PDII------PEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~~gg~---------------~e~v------~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
| |-+.+||+|+|+|.|-...... +++- ...-.....+.++.+|.+++.+||.++++.
T Consensus 353 E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~ 430 (559)
T PF15024_consen 353 E--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILAT 430 (559)
T ss_pred C--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhc
Confidence 3 3478999999999986643211 1110 000123456788889999999999999886
Q ss_pred HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 009759 461 QELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 461 ~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~ 493 (526)
+. .-++ -+|+.+.+.+++- .+.+
T Consensus 431 ~v---------~Py~P~efT~egmLeRv~-~~ie 454 (559)
T PF15024_consen 431 PV---------EPYLPYEFTCEGMLERVN-ALIE 454 (559)
T ss_pred CC---------CCcCCcccCHHHHHHHHH-HHHH
Confidence 42 2344 4799999988884 4443
No 168
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.43 E-value=0.025 Score=56.30 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=61.6
Q ss_pred CCcEEEEEeccccccc--HHHHHHHHHhC--CCcEEEEEeCCc--cHHHHHHHhcC---CC-eEEecccChhhHHHHHHc
Q 009759 322 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG---MP-AVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg--~~~li~a~~~l--~~~~l~ivG~g~--~~~~l~~l~~~---~~-V~~~g~v~~~~l~~~~~~ 391 (526)
++.+++..|.-.+.|. .+.+.++++.+ .+.+++++|... +.+..+++.+. .+ +.+.|..+-.++..+++.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 4556677776555554 33445554444 368888887532 22222333332 22 557788877999999999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
||++|..- .+.+-=|.|.|+|+|+--
T Consensus 263 a~l~v~nD-----SGp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 263 AQLFIGVD-----SAPAHIAAAVNTPLICLF 288 (352)
T ss_pred CCEEEecC-----CHHHHHHHHcCCCEEEEE
Confidence 99999543 234555889999999763
No 169
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.0076 Score=64.41 Aligned_cols=255 Identities=17% Similarity=0.132 Sum_probs=154.8
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
.-|+|++|+++.+....++..+..++++-+..|..++...--..... +......+-.+|.+-..+...+..+...
T Consensus 140 ~~d~vwihdyhlmllp~~lr~~~~~~~ig~flhspfpssEi~r~lp~-----r~eIl~gll~~~~i~f~t~d~arhFls~ 214 (732)
T KOG1050|consen 140 EGDIVWIHDYHLMLLPQMLRERFNSAKIGFFLHSPFPSSEIYRCLPV-----RKEILRGLLYDDLLGFHTDDYARHFLST 214 (732)
T ss_pred CCCcEEEEcchhhccchhhhcccccceEEEeccCCCChHHHHHhccc-----HHHHHHhhhccCccccccccHHHHHHHH
Confidence 77999999987776655555555667777888887764322111111 1112223445666555554444433220
Q ss_pred ------------cc-------cCCCcEEEeecCCCCCCCCCCccc---HHHHHhhcCCCCCCcEEEEEecccccccHHHH
Q 009759 284 ------------RV-------TAANKIRIWKKGVDSESFHPRFRS---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 341 (526)
Q Consensus 284 ------------~~-------~~~~ki~vi~ngid~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~l 341 (526)
++ .....+..+|-|+|...+...... ..-..++.....++.+++.+-+++.-||+..=
T Consensus 215 c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~K 294 (732)
T KOG1050|consen 215 CSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLK 294 (732)
T ss_pred HHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHH
Confidence 00 012345567778877766433221 11122222223477788888899999997655
Q ss_pred HHHHHhC----C----CcEEEEEeC-----CccHHHHHHH----hcCC----------C-eEEecccChhhHHHHHHcCc
Q 009759 342 KRVMDRL----P----EARIAFIGD-----GPYREELEKM----FTGM----------P-AVFTGMLLGEELSQAYASGD 393 (526)
Q Consensus 342 i~a~~~l----~----~~~l~ivG~-----g~~~~~l~~l----~~~~----------~-V~~~g~v~~~~l~~~~~~aD 393 (526)
+.++.++ | ++.++.+.. +...++++.. .... . +.+...++..++.+++..+|
T Consensus 295 l~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vae 374 (732)
T KOG1050|consen 295 LLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAE 374 (732)
T ss_pred HHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhh
Confidence 5555443 3 344444432 2211222221 1111 1 34567788899999999999
Q ss_pred EEEecCCCCCCcHHHHHHHHcC----CcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHH
Q 009759 394 VFVMPSESETLGLVVLEAMSSG----IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 468 (526)
Q Consensus 394 v~v~ps~~e~~~~~ilEAma~G----~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~ 468 (526)
+.+..+..+|..++.+|+.+|. .+.|.+..-|..+.+ +....++.+.|.++++.+|..+++..+.-.+++
T Consensus 375 v~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl-----~d~aivvnpw~~~~~~~~i~~al~~s~~e~~~r 448 (732)
T KOG1050|consen 375 VCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTL-----EDAAIVVNPWDGDEFAILISKALTMSDEERELR 448 (732)
T ss_pred heeecccccccchhhhHHHHhhcccCCceEEeeeccccccc-----cccCEEECCcchHHHHHHHHHHhhcCHHHHhhc
Confidence 9999999999999999999885 556777666666665 334567888999999999999998655444443
No 170
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.42 E-value=0.00068 Score=58.82 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=79.3
Q ss_pred HCCCeEEEEEeCCCCCccccCceeccccccCCCccccc------cc----hhcccHHHHHHHH-hcCCCEEEECCCchHH
Q 009759 149 EMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKV------PL----SLALSPRIISEVA-RFKPDIIHASSPGIMV 217 (526)
Q Consensus 149 ~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~l~~~l~-~~~pDiV~~~~~~~~~ 217 (526)
+.||+|.+++........ .+++.+....-........ .. .......+.++.+ .+.||||++|.....
T Consensus 1 q~gh~v~fl~~~~~~~~~-~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe- 78 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGE- 78 (171)
T ss_pred CCCCEEEEEecCCCCCCC-CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcch-
Confidence 369999999954432222 4555544333211111111 11 1111122222222 357899999974222
Q ss_pred HHHHHHHH-hcCCCEEEEEecCCcccc------cccccc---cccchHH-HHHHHHhhcCcEEEeCChhHHHHHHHhccc
Q 009759 218 FGALIIAK-LLCVPIVMSYHTHVPVYI------PRYTFS---WLVKPMW-LVIKFLHRAADLTLVPSVAIGKDLEAARVT 286 (526)
Q Consensus 218 ~~~~~~~~-~~~~p~v~~~h~~~~~~~------~~~~~~---~~~~~~~-~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~ 286 (526)
.++++. ..++|++.++--.+.... +..... ......+ ......+..||..+++|.+.+..+-..+.
T Consensus 79 --~Lflkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~fP~~~r- 155 (171)
T PF12000_consen 79 --TLFLKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQFPAEFR- 155 (171)
T ss_pred --hhhHHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhCCHHHH-
Confidence 223333 348888765543221111 111111 1111112 23445678899999999999998877753
Q ss_pred CCCcEEEeecCCCCCCC
Q 009759 287 AANKIRIWKKGVDSESF 303 (526)
Q Consensus 287 ~~~ki~vi~ngid~~~~ 303 (526)
+|+.||.-|||++.+
T Consensus 156 --~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 156 --SKISVIHDGIDTDRF 170 (171)
T ss_pred --cCcEEeecccchhhc
Confidence 699999999998754
No 171
>PLN03004 UDP-glycosyltransferase
Probab=97.41 E-value=0.0027 Score=64.71 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=87.7
Q ss_pred CCCcEEEEEeccc--ccccHHHHHHHHHhCCCcEEEEEeCCc------------cHHHHHHHhcCCCeEEecccChhhHH
Q 009759 321 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDGP------------YREELEKMFTGMPAVFTGMLLGEELS 386 (526)
Q Consensus 321 ~~~~~i~~vG~l~--~~Kg~~~li~a~~~l~~~~l~ivG~g~------------~~~~l~~l~~~~~V~~~g~v~~~~l~ 386 (526)
++..+++.+|+.. ..+-+..+..+++..+.--+..+.... ..+.+++..++.++.+.+|+|+.+
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~-- 346 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP-- 346 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH--
Confidence 3456677888873 345577788888887653333333210 112344445556899999998766
Q ss_pred HHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeC-----CCCHHHHHHHHHHh
Q 009759 387 QAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPL 457 (526)
Q Consensus 387 ~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~-----~~d~~~la~ai~~l 457 (526)
+++.+++..+-+ .+.-++++||+++|+|+|+....+ ....+. +.-+.|+.++ .-+.++++++|.++
T Consensus 347 -iL~H~~v~~FvT--H~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~--~~~g~g~~l~~~~~~~~~~e~l~~av~~v 421 (451)
T PLN03004 347 -VLNHKAVGGFVT--HCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIV--DEIKIAISMNESETGFVSSTEVEKRVQEI 421 (451)
T ss_pred -HhCCCccceEec--cCcchHHHHHHHcCCCEEeccccccchhhHHHHH--HHhCceEEecCCcCCccCHHHHHHHHHHH
Confidence 577888733222 344568999999999999987543 222330 1225666554 23789999999999
Q ss_pred hhCHHHHH
Q 009759 458 LYNQELRE 465 (526)
Q Consensus 458 l~d~~~~~ 465 (526)
+.++..++
T Consensus 422 m~~~~~r~ 429 (451)
T PLN03004 422 IGECPVRE 429 (451)
T ss_pred hcCHHHHH
Confidence 98755433
No 172
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.34 E-value=0.018 Score=59.73 Aligned_cols=135 Identities=11% Similarity=0.106 Sum_probs=80.2
Q ss_pred CCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeCCc------------------cHHHHHHHhcCCCeEEecccC
Q 009759 322 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP------------------YREELEKMFTGMPAVFTGMLL 381 (526)
Q Consensus 322 ~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~g~------------------~~~~l~~l~~~~~V~~~g~v~ 381 (526)
+..+++.+|++.. .+-+..++.+++..+. +|+.+-.++ ..+.+.+... .++.+.+|+|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~-~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~-~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGH-RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK-DIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCC-CeEEEEcCCcccccccccccccchhhhCChHHHHHhc-cCceEEeeCC
Confidence 3456678888633 4467888888888754 544432110 0112222222 2567789998
Q ss_pred hhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----C-ceecccCCCceeEeeC-------------
Q 009759 382 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----P-DIIPEDQDGKIGYLFN------------- 443 (526)
Q Consensus 382 ~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~-e~v~~~~~~~~g~~~~------------- 443 (526)
+.++... .+++++| ..+.-++++||+.+|+|+|+....+- . ..+ +.-+.|..+.
T Consensus 352 Q~~iL~H-~~v~~Fv----tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v---~~~g~Gv~l~~~~~~~~~~~~~~ 423 (481)
T PLN02554 352 QVAVLAK-PAIGGFV----THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMV---EELGLAVEIRKYWRGDLLAGEME 423 (481)
T ss_pred HHHHhCC-cccCccc----ccCccchHHHHHHcCCCEEecCccccchhhHHHHH---HHhCceEEeeccccccccccccC
Confidence 7654221 4445555 33445689999999999999876431 1 122 2334455442
Q ss_pred CCCHHHHHHHHHHhhh-CHHHHHH
Q 009759 444 PGDLDDCLSKLEPLLY-NQELRET 466 (526)
Q Consensus 444 ~~d~~~la~ai~~ll~-d~~~~~~ 466 (526)
.-+.+++.++|.+++. +++.+++
T Consensus 424 ~~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 424 TVTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred eEcHHHHHHHHHHHhcCCHHHHHH
Confidence 1278999999999996 5544443
No 173
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.21 E-value=0.1 Score=51.12 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=62.3
Q ss_pred CCCcEEEEEeccccccc--HHHHHHHHHhC--CCcEEEEEeCCc-cHHHHHHHhcCC-CeEEecccChhhHHHHHHcCcE
Q 009759 321 PDKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGP-YREELEKMFTGM-PAVFTGMLLGEELSQAYASGDV 394 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~Kg--~~~li~a~~~l--~~~~l~ivG~g~-~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~aDv 394 (526)
+++.++++.|.-...|. .+.+.++++.+ .+.+++++|.++ +.+..+++.+.. +..+.|..+-.++..+++.||+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCE
Confidence 34556677775455555 34555555444 367888875444 334444444322 3456787777899999999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 395 FVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 395 ~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+|..- ...+-=|.|.|+|+|+--
T Consensus 258 ~I~~D-----Sgp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 258 VVGVD-----TGLTHLAAALDKPTVTLY 280 (319)
T ss_pred EEeCC-----ChHHHHHHHcCCCEEEEE
Confidence 99553 234555889999999753
No 174
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.16 E-value=0.028 Score=55.73 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=60.6
Q ss_pred CCcEEEEEeccccccc--HHHHHHHHHhC--CCcEEEEEeCCc--cHHHHHHHhcC---CC-eEEecccChhhHHHHHHc
Q 009759 322 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG---MP-AVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg--~~~li~a~~~l--~~~~l~ivG~g~--~~~~l~~l~~~---~~-V~~~g~v~~~~l~~~~~~ 391 (526)
+..+++..|.-.+.|. .+.+.+.++.+ .+.+++++|... +.+..++.... .+ +.+.|..+-.|+..+++.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 3445566665445554 34444444444 368899998543 22223333322 22 446788777899999999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
||++|..- ++.+-=|.|.|+|+|+--
T Consensus 261 a~l~Vs~D-----SGp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 261 ARLFIGVD-----SVPMHMAAALGTPLVALF 286 (344)
T ss_pred CCEEEecC-----CHHHHHHHHcCCCEEEEE
Confidence 99999553 244555999999999763
No 175
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.08 E-value=0.34 Score=47.52 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=60.2
Q ss_pred CcEEEEEeccccccc--HHHHHHHHHhC--CCcEEEEE-eCCccHHHHHHHhcCC-CeEEecccChhhHHHHHHcCcEEE
Q 009759 323 KPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFV 396 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg--~~~li~a~~~l--~~~~l~iv-G~g~~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~aDv~v 396 (526)
+.+++..|.-...|. .+.+.+++..+ .+.++++. |...+.+..+++.+.. ++.+.|..+-.|+..+++.||++|
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I 258 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVV 258 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEE
Confidence 334444554334443 33444444444 36788886 6444444445544432 466778887789999999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 397 MPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 397 ~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
..- .+.+-=|.|+|+|+|+--.
T Consensus 259 ~nD-----SGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 259 SVD-----TGLSHLTAALDRPNITLYG 280 (322)
T ss_pred ecC-----CcHHHHHHHhCCCEEEEEC
Confidence 543 2345569999999997643
No 176
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.08 E-value=0.089 Score=50.95 Aligned_cols=239 Identities=16% Similarity=0.107 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 135 GYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
|...+...|+++|... ++++.-+........ + +.... .............+..-.||+|+..+.
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~------------l--p~~~~-~~~~~~~~~~~~~~~~~~pdLiIsaGr 66 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRW------------L--PRLLP-APLRALLKPFSPALEPPWPDLIISAGR 66 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhh------------c--ccccc-chHHHhhhcccccccCCCCcEEEECCC
Confidence 7889999999999874 677766654331000 0 00000 000000111112233347999999886
Q ss_pred chHHHHHHHHHHhcCC--CEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcE
Q 009759 214 GIMVFGALIIAKLLCV--PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKI 291 (526)
Q Consensus 214 ~~~~~~~~~~~~~~~~--p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki 291 (526)
..... ...+++..+. +.|+..+-.. .....|.+|++.++- .....++
T Consensus 67 ~t~~~-~~~l~r~~gg~~~~V~i~~P~~----------------------~~~~FDlvi~p~HD~--------~~~~~Nv 115 (311)
T PF06258_consen 67 RTAPA-ALALRRASGGRTKTVQIMDPRL----------------------PPRPFDLVIVPEHDR--------LPRGPNV 115 (311)
T ss_pred chHHH-HHHHHHHcCCCceEEEEcCCCC----------------------CccccCEEEECcccC--------cCCCCce
Confidence 55443 4445555555 4444332111 135689999988761 1122344
Q ss_pred EEe---ecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccc--cHH---HHHHHHHhC---CCcEEEEEeCCc
Q 009759 292 RIW---KKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK--SLD---FLKRVMDRL---PEARIAFIGDGP 360 (526)
Q Consensus 292 ~vi---~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~K--g~~---~li~a~~~l---~~~~l~ivG~g~ 360 (526)
... +|.++.+.... .......++.. .+.+.+.+.+|.-+..- +.+ .+++.+..+ .+..+.|..+..
T Consensus 116 l~t~ga~~~i~~~~l~~--a~~~~~~~~~~-l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRR 192 (311)
T PF06258_consen 116 LPTLGAPNRITPERLAE--AAAAWAPRLAA-LPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRR 192 (311)
T ss_pred EecccCCCcCCHHHHHH--HHHhhhhhhcc-CCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 332 23333322211 11112222321 34555667888643322 222 333333322 347888888653
Q ss_pred c----HHHHHHHhcCC-CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 361 Y----REELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 361 ~----~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
- .+.+++..+.. .+.+...-+..-+..+|+.||.++++.. .-..+.||++.|+||.+-...+
T Consensus 193 Tp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D---SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 193 TPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTED---SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCc---cHHHHHHHHHcCCCEEEecCCC
Confidence 3 33444444322 4645554455568899999999998743 2346889999999999887765
No 177
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=97.06 E-value=0.0072 Score=52.83 Aligned_cols=134 Identities=21% Similarity=0.207 Sum_probs=76.6
Q ss_pred CchHHHHHHHHHHH--HHCCCeEEEEEeCCCCCccc----cC--------ceeccccccCCCccccccchhcccHHHHHH
Q 009759 134 SGYKNRFQNFIKYL--REMGDEVMVVTTHEGVPQEF----YG--------AKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 134 gG~~~~~~~l~~~L--~~~G~~V~vi~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+-..+..|.+.+ ....++..+++..+...... .. ..+.+......+........+........+
T Consensus 8 GGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~~~~~~~i 87 (170)
T PF08660_consen 8 GGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRAFLQSLRI 87 (170)
T ss_pred cHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHHHHHHHHH
Confidence 89999999999999 22356777777665433220 00 011111111111222222233344456667
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhc------CCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLL------CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~------~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
+.+.+||+|+++++..... ..++++.. +.++|+..--.- . ...+ .--+.++..+|.+++.-
T Consensus 88 l~r~rPdvii~nGpg~~vp-~~~~~~l~~~~~~~~~kiIyIES~aR-v----~~lS-------lTGklly~~aD~f~VQW 154 (170)
T PF08660_consen 88 LRRERPDVIISNGPGTCVP-VCLAAKLLRLLGLRGSKIIYIESFAR-V----KTLS-------LTGKLLYPFADRFIVQW 154 (170)
T ss_pred HHHhCCCEEEEcCCceeeH-HHHHHHHHHHhhccCCcEEEEEeeee-c----CCCc-------hHHHHHHHhCCEEEEcC
Confidence 7788999999999865433 34455666 888887432110 0 0000 22455677899999999
Q ss_pred hhHHHHH
Q 009759 274 VAIGKDL 280 (526)
Q Consensus 274 ~~~~~~l 280 (526)
+.+++.+
T Consensus 155 ~~l~~~y 161 (170)
T PF08660_consen 155 EELAEKY 161 (170)
T ss_pred HHHHhHC
Confidence 8887764
No 178
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.04 E-value=0.0019 Score=64.47 Aligned_cols=187 Identities=16% Similarity=0.132 Sum_probs=87.9
Q ss_pred cEEEEEeccC--------CCCccCchHHHHHHHHHHHHHC--------CC----eEEEEEeCCCC---------CccccC
Q 009759 119 RRIALFVEPS--------PFSYVSGYKNRFQNFIKYLREM--------GD----EVMVVTTHEGV---------PQEFYG 169 (526)
Q Consensus 119 mkIliv~~~~--------p~~~~gG~~~~~~~l~~~L~~~--------G~----~V~vi~~~~~~---------~~~~~~ 169 (526)
-+|++++.+. ..|+.||--.++..++++|.+. |- +|.+++.--.. .+...+
T Consensus 273 f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~g 352 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSG 352 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETT
T ss_pred EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCC
Confidence 3788886542 3477889889999999999753 43 47777742111 011111
Q ss_pred ---ceeccccccCCC-----ccccccch---hcccHHHHHHH-H--hcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 170 ---AKLIGSRSFPCP-----WYQKVPLS---LALSPRIISEV-A--RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 170 ---~~~~~~~~~~~~-----~~~~~~~~---~~~~~~l~~~l-~--~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
..+++++.-+.. +..+...+ -.+...+.+.+ + ..+||+||.|... ..+.+.+++.+.|+|.+.+.
T Consensus 353 t~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsD-gnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 353 TENARILRVPFGPEKGILRKWISRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSD-GNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp ESSEEEEEE-ESESTEEE-S---GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHH-HHHHHHHHHHHHT-EEEEE-
T ss_pred CCCcEEEEecCCCCcchhhhccchhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCc-chHHHHHHHhhcCCceehhh
Confidence 222222222211 11111111 11112222222 2 2589999999754 34556778899999999999
Q ss_pred ecCCcccccccccccc-------cchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcc---------------------cC
Q 009759 236 HTHVPVYIPRYTFSWL-------VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARV---------------------TA 287 (526)
Q Consensus 236 h~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~---------------------~~ 287 (526)
|.....-.......|. .......+...++.||.||+.+......-....+ .-
T Consensus 432 HsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~QEI~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vF 511 (550)
T PF00862_consen 432 HSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQEIAGQKDTVGQYESHKAFTLPGLYRVVNGIDVF 511 (550)
T ss_dssp SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHHHB-SSSBHTTGGGSSEEETTTEEEEES--TT
T ss_pred hccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchHhhcCCccccCCccchhhcchHhHHhhhcccccc
Confidence 9854322111111111 1112244567889999999988765542111111 12
Q ss_pred CCcEEEeecCCCCCCCCCC
Q 009759 288 ANKIRIWKKGVDSESFHPR 306 (526)
Q Consensus 288 ~~ki~vi~ngid~~~~~~~ 306 (526)
..|+.+++.|+|...+-|-
T Consensus 512 dPkfNiv~PGad~~iyFpy 530 (550)
T PF00862_consen 512 DPKFNIVSPGADESIYFPY 530 (550)
T ss_dssp -TTEEE------TTTS--T
T ss_pred CCcccccCCCCCcceecCC
Confidence 3567777777777766554
No 179
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=97.00 E-value=0.32 Score=45.67 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=128.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+++ ||.+. -..+++.|.+.||+|.+.+................+ .........+..
T Consensus 1 m~ILvl---------GGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v-----------~~g~l~~~~l~~ 59 (256)
T TIGR00715 1 MTVLLM---------GGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTV-----------HTGALDPQELRE 59 (256)
T ss_pred CeEEEE---------echHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceE-----------EECCCCHHHHHH
Confidence 688777 55454 889999999999999998876543322211100000 000111235778
Q ss_pred HHHhcCCCEEEECCCchH---HHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChh
Q 009759 199 EVARFKPDIIHASSPGIM---VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 275 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~---~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~ 275 (526)
++++.++|+|+--...+. ...+...++..++|++-.....+. ...+.+.+.|-.
T Consensus 60 ~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~-----------------------~~~~~~~v~~~~ 116 (256)
T TIGR00715 60 FLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLA-----------------------LGKNIIEVPDIE 116 (256)
T ss_pred HHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCC-----------------------CCCCeEEeCCHH
Confidence 899999998766443222 223455778889999865443210 111223333322
Q ss_pred HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEEE
Q 009759 276 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF 355 (526)
Q Consensus 276 ~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~i 355 (526)
.+..+.... ...++.+++..|+ |.+..+...... ..+.+.+
T Consensus 117 ea~~~~~~~----------------------------------~~~~~~i~lttG~----k~l~~f~~~~~~-~~~~~Rv 157 (256)
T TIGR00715 117 EATRVAYQP----------------------------------YLRGKRVFLTAGA----SWLSHFSLSQDE-AVVFVRV 157 (256)
T ss_pred HHHHHhhhc----------------------------------cccCCcEEEecCc----chHHHHhhccCC-ceEEEEE
Confidence 222111100 0012245666664 555555442110 1122333
Q ss_pred EeCCccHHHHHHHhc----CCC-eEEecccChhhHHHHHHcCcEEEecCC---C-CCCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 356 IGDGPYREELEKMFT----GMP-AVFTGMLLGEELSQAYASGDVFVMPSE---S-ETLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 356 vG~g~~~~~l~~l~~----~~~-V~~~g~v~~~~l~~~~~~aDv~v~ps~---~-e~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
. +..+.++...+ ..+ |-..|..+.+.=..+++...+-++-+. . .|+.-|+--|+.+|+|||.-+-+..
T Consensus 158 L---P~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 158 L---PYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT 234 (256)
T ss_pred C---CCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC
Confidence 3 22222222211 113 556777776666677776655443333 1 2556789999999999998876643
Q ss_pred CceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 427 PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 427 ~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
..-. ..+. +.+++.+.+.+++
T Consensus 235 ~~~~---------~~~~--~~~el~~~l~~~~ 255 (256)
T TIGR00715 235 IPGV---------AIFD--DISQLNQFVARLL 255 (256)
T ss_pred CCCC---------ccCC--CHHHHHHHHHHhc
Confidence 2110 1233 7788877776653
No 180
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=96.99 E-value=0.0076 Score=53.69 Aligned_cols=147 Identities=16% Similarity=0.104 Sum_probs=73.8
Q ss_pred CchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEEC
Q 009759 134 SGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHAS 211 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~ 211 (526)
-|-...+..|++.|.++ |+.|.+-+......+.....-...+.....| +.....+.++++..+||+++..
T Consensus 31 vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P--------~D~~~~~~rfl~~~~P~~~i~~ 102 (186)
T PF04413_consen 31 VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLP--------LDFPWAVRRFLDHWRPDLLIWV 102 (186)
T ss_dssp HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE-----------SSHHHHHHHHHHH--SEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeC--------ccCHHHHHHHHHHhCCCEEEEE
Confidence 36567789999999988 7777776654432211100000011111111 2345678889999999999887
Q ss_pred CCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcE
Q 009759 212 SPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKI 291 (526)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki 291 (526)
...... ..+..++..|+|+++..--..+..... .+....+.+.+++..|.|.+.|+..++.+.+.+. +.+++
T Consensus 103 EtElWP-nll~~a~~~~ip~~LvNarls~~s~~~------~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~lG~-~~~~v 174 (186)
T PF04413_consen 103 ETELWP-NLLREAKRRGIPVVLVNARLSERSFRR------YRRFPFLFRPLLSRFDRILAQSEADAERFRKLGA-PPERV 174 (186)
T ss_dssp S----H-HHHHH-----S-EEEEEE--------------------HHHHHHGGG-SEEEESSHHHHHHHHTTT--S--SE
T ss_pred ccccCH-HHHHHHhhcCCCEEEEeeeeccccchh------hhhhHHHHHHHHHhCCEEEECCHHHHHHHHHcCC-CcceE
Confidence 654332 234456778999887543322211111 1122357888999999999999999999999986 66789
Q ss_pred EEeec
Q 009759 292 RIWKK 296 (526)
Q Consensus 292 ~vi~n 296 (526)
.+..|
T Consensus 175 ~v~Gn 179 (186)
T PF04413_consen 175 HVTGN 179 (186)
T ss_dssp EE---
T ss_pred EEeCc
Confidence 88876
No 181
>PLN02207 UDP-glycosyltransferase
Probab=96.97 E-value=0.088 Score=54.08 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=99.0
Q ss_pred hhcCcEEEeCChhHHHHH-HHhccc-C-CCcEEEeecCCCCCCC-CCC---cccHHHHHhhcCCCCCCcEEEEEeccc--
Q 009759 263 HRAADLTLVPSVAIGKDL-EAARVT-A-ANKIRIWKKGVDSESF-HPR---FRSSEMRWRLSNGEPDKPLIVHVGRLG-- 333 (526)
Q Consensus 263 ~~~ad~ii~~S~~~~~~l-~~~~~~-~-~~ki~vi~ngid~~~~-~~~---~~~~~~~~~~~~~~~~~~~i~~vG~l~-- 333 (526)
.+.+|.++++|....+.- .+.... + ..++..|..-.....- .+. ....+...-+....++..+.+.+|+..
T Consensus 209 ~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~ 288 (468)
T PLN02207 209 FTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRL 288 (468)
T ss_pred cccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCC
Confidence 567899999997766542 222210 1 1245544432211100 010 011222222322233456677788763
Q ss_pred ccccHHHHHHHHHhCCCcEEEE-EeCCc------cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcH
Q 009759 334 VEKSLDFLKRVMDRLPEARIAF-IGDGP------YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 406 (526)
Q Consensus 334 ~~Kg~~~li~a~~~l~~~~l~i-vG~g~------~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~ 406 (526)
..+-+..+..+++..+. +|+. +.... ..+.+++... .++.+.+|+|+.++... .++.++| ..+.-+
T Consensus 289 ~~~q~~ela~~l~~~~~-~flW~~r~~~~~~~~~lp~~f~er~~-~~g~i~~W~PQ~~IL~H-~~vg~Fv----TH~Gwn 361 (468)
T PLN02207 289 RGPLVKEIAHGLELCQY-RFLWSLRTEEVTNDDLLPEGFLDRVS-GRGMICGWSPQVEILAH-KAVGGFV----SHCGWN 361 (468)
T ss_pred CHHHHHHHHHHHHHCCC-cEEEEEeCCCccccccCCHHHHhhcC-CCeEEEEeCCHHHHhcc-cccceee----ecCccc
Confidence 23457788888888865 4433 44211 1123333232 35677799987765333 2233355 223345
Q ss_pred HHHHHHHcCCcEEEeCCCCCC----ceecccCCCceeEee---------CCCCHHHHHHHHHHhhh
Q 009759 407 VVLEAMSSGIPVVGVRAGGIP----DIIPEDQDGKIGYLF---------NPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 407 ~ilEAma~G~PvI~~~~gg~~----e~v~~~~~~~~g~~~---------~~~d~~~la~ai~~ll~ 459 (526)
+++||+.+|+|+|+....+-. .++. +.-+.|+-+ ..-+.+++.++|.+++.
T Consensus 362 S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 362 SIVESLWFGVPIVTWPMYAEQQLNAFLMV--KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cHHHHHHcCCCEEecCccccchhhHHHHH--HHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 889999999999998765322 2220 112344422 11277899999999996
No 182
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.75 E-value=0.064 Score=55.55 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=82.4
Q ss_pred CCcEEEEEeccc--ccccHHHHHHHHHhCCCcEEEE-EeCCc---------cHHHHHHHhcCCCeEEecccChhhHHHHH
Q 009759 322 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAF-IGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAY 389 (526)
Q Consensus 322 ~~~~i~~vG~l~--~~Kg~~~li~a~~~l~~~~l~i-vG~g~---------~~~~l~~l~~~~~V~~~g~v~~~~l~~~~ 389 (526)
+..+.+.+|++. ..+.+..+..+++..+ .+|+. ++... ..+.+.+...+ +..+.+|+|+.+ ++
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~-~~flw~~~~~~~~~~~~~~~lp~~~~er~~~-rg~v~~w~PQ~~---iL 354 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVG-CRFLWSIRTNPAEYASPYEPLPEGFMDRVMG-RGLVCGWAPQVE---IL 354 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCC-CcEEEEEecCcccccchhhhCChHHHHHhcc-CeeeeccCCHHH---Hh
Confidence 446667788763 3445777788888774 45543 44211 11222222222 346679997665 46
Q ss_pred HcC--cEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCc-----eecccCCCceeEeeC---------CCCHHHHHHH
Q 009759 390 ASG--DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD-----IIPEDQDGKIGYLFN---------PGDLDDCLSK 453 (526)
Q Consensus 390 ~~a--Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e-----~v~~~~~~~~g~~~~---------~~d~~~la~a 453 (526)
+.. +++| ..+.-++++||+++|+|+|+....+-.. .+ +.-+.|+.+. .-+.++++++
T Consensus 355 ~h~~vg~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~---~~~g~g~~~~~~~~~~~~~~~~~~~l~~a 427 (475)
T PLN02167 355 AHKAIGGFV----SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV---KELGLAVELRLDYVSAYGEIVKADEIAGA 427 (475)
T ss_pred cCcccCeEE----eeCCcccHHHHHHcCCCEEeccccccchhhHHHHH---HHhCeeEEeecccccccCCcccHHHHHHH
Confidence 554 4565 2333458999999999999886543211 12 2334565543 1268899999
Q ss_pred HHHhhhCH-HHH---HHHHHHHHHHH
Q 009759 454 LEPLLYNQ-ELR---ETMGQAARQEM 475 (526)
Q Consensus 454 i~~ll~d~-~~~---~~~~~~a~~~~ 475 (526)
|.+++.+. +.+ +++++.+++.+
T Consensus 428 v~~~m~~~~~~r~~a~~~~~~~~~av 453 (475)
T PLN02167 428 VRSLMDGEDVPRKKVKEIAEAARKAV 453 (475)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999753 322 33444444444
No 183
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=96.60 E-value=0.058 Score=46.00 Aligned_cols=135 Identities=16% Similarity=0.051 Sum_probs=72.4
Q ss_pred cEEEEEeccCCCCccCchH-HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYK-NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
|||+++.. ..||.. ..+..+++.+ .|++++++.....-.+. . +.. .+ .-..
T Consensus 1 M~ILlle~-----y~ggSHk~~~~~L~~~~---~~~~~lltLP~r~w~WR------------m---Rg~--AL---~~a~ 52 (168)
T PF12038_consen 1 MRILLLEP-----YYGGSHKQWADGLAAHS---EHEWTLLTLPARKWHWR------------M---RGA--AL---YFAQ 52 (168)
T ss_pred CeEEEEcc-----ccccCHHHHHHHHHHhc---cCCEEEEEcCCCccccc------------c---CCC--HH---HHhh
Confidence 89999864 224544 4445555555 48888888643211110 0 000 00 0113
Q ss_pred HHHHhcCCCEEEECCCc-hHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhH
Q 009759 198 SEVARFKPDIIHASSPG-IMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI 276 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~ 276 (526)
+......+|+|++.+-- ...+.++. ....++|.++++|..--.|........-.. +....-...-.||.|+++|...
T Consensus 53 ~~~~~~~~dll~aTsmldLa~l~gL~-p~l~~~p~ilYFHENQl~YP~~~~~~rd~~-~~~~ni~saLaAD~v~FNS~~n 130 (168)
T PF12038_consen 53 QIPLSHSYDLLFATSMLDLATLRGLR-PDLANVPKILYFHENQLAYPVSPGQERDFQ-YGMNNIYSALAADRVVFNSAFN 130 (168)
T ss_pred ccccccCCCEEEeeccccHHHHHhhc-cCCCCCCEEEEEecCcccCCCCCCcccccc-HHHHHHHHHHhceeeeecchhh
Confidence 34445578999998843 22232322 255689999999985433322211111111 1122233344699999999998
Q ss_pred HHHHHHh
Q 009759 277 GKDLEAA 283 (526)
Q Consensus 277 ~~~l~~~ 283 (526)
++.+.+.
T Consensus 131 r~sFL~~ 137 (168)
T PF12038_consen 131 RDSFLDG 137 (168)
T ss_pred HHHHHHH
Confidence 8877653
No 184
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.51 E-value=0.7 Score=43.73 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecC
Q 009759 218 FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 297 (526)
Q Consensus 218 ~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ng 297 (526)
......++..++|+++.-.+..+ ..........+.+++.++.+.+=.+...+.+...+. +. ++.++|..
T Consensus 89 ~~~~~~~~~~~~pv~~~g~g~gp---------~~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l~~~g~-~~-~~~~~~D~ 157 (286)
T PF04230_consen 89 LRWLFLAKKLGKPVIILGQGIGP---------FRSEEFKKLLRRILSKADYISVRDEYSYELLKKLGI-SG-NVKLVPDP 157 (286)
T ss_pred HHHHHHHHhcCCCeEEECceECc---------cCCHHHHHHHHHHHhCCCEEEECCHHHHHHHHHcCC-CC-CcEEEeCc
Confidence 33455677889999886666422 112223356777888899988877777775666553 32 77777654
Q ss_pred CCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecc---cccccHHHHHHHHHhC--CC--cEEEEEeCC--c-cHHHHHH
Q 009759 298 VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL---GVEKSLDFLKRVMDRL--PE--ARIAFIGDG--P-YREELEK 367 (526)
Q Consensus 298 id~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l---~~~Kg~~~li~a~~~l--~~--~~l~ivG~g--~-~~~~l~~ 367 (526)
+- ...+...... ..........+... ....-.+.+.+.+..+ .. +.+...... . .......
T Consensus 158 af--~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
T PF04230_consen 158 AF--LLPPSYPDED-------KSKPKRNYISVSNSPSRNNEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNE 228 (286)
T ss_pred hh--hcCccccccc-------ccccccceeeeccccchhhhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHh
Confidence 41 1111111100 00001122222221 1222344444555444 22 333333321 1 1111111
Q ss_pred H---h-cCCC-eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 368 M---F-TGMP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 368 l---~-~~~~-V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
. . ...+ ..+....+.+++..++++||++|.... - ..+=|+++|+|+|+-+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl----H-~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 229 IDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRL----H-GAILALSLGVPVIAISY 284 (286)
T ss_pred hhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCC----H-HHHHHHHcCCCEEEEec
Confidence 1 1 1112 444555666899999999999995543 2 34559999999998643
No 185
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=96.47 E-value=0.014 Score=51.31 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=59.1
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHH-HHHHHH-Hhc-CCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcE
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVF-GALIIA-KLL-CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 268 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~-~~~~~~-~~~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 268 (526)
....+.+++++.+||+|++..+..... ...+.. ... ++|++..+-|..... + .++...+|.
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H-~---------------~W~~~~~D~ 140 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVH-P---------------FWIHPGVDR 140 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCC-c---------------CeecCCCCE
Confidence 445788899999999999998765444 332322 323 577665555531111 0 113467999
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEee
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWK 295 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ 295 (526)
.++.|+..++.+.+.| .+.+++.+..
T Consensus 141 y~Vase~~~~~l~~~G-i~~~~I~vtG 166 (169)
T PF06925_consen 141 YFVASEEVKEELIERG-IPPERIHVTG 166 (169)
T ss_pred EEECCHHHHHHHHHcC-CChhHEEEeC
Confidence 9999999999999976 4778887754
No 186
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=96.35 E-value=0.24 Score=52.74 Aligned_cols=182 Identities=18% Similarity=0.152 Sum_probs=102.6
Q ss_pred HhhcCcEEEeCChhHHHHHHH-----hcccCCCcEEEeecCCCCCCCCCCccc---------------------------
Q 009759 262 LHRAADLTLVPSVAIGKDLEA-----ARVTAANKIRIWKKGVDSESFHPRFRS--------------------------- 309 (526)
Q Consensus 262 ~~~~ad~ii~~S~~~~~~l~~-----~~~~~~~ki~vi~ngid~~~~~~~~~~--------------------------- 309 (526)
++..+..+--+|.--.+.+++ .+.....++.-+.|||....|-.....
T Consensus 328 Al~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~ 407 (713)
T PF00343_consen 328 ALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKF 407 (713)
T ss_dssp HHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGG
T ss_pred HHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHh
Confidence 455666777788766665543 222334689999999999887432100
Q ss_pred ---HHH-------------------HHhhcC-CCCCCcEEEEEecccccccHHH-HHHH---HHh---CC-----CcEEE
Q 009759 310 ---SEM-------------------RWRLSN-GEPDKPLIVHVGRLGVEKSLDF-LKRV---MDR---LP-----EARIA 354 (526)
Q Consensus 310 ---~~~-------------------~~~~~~-~~~~~~~i~~vG~l~~~Kg~~~-li~a---~~~---l~-----~~~l~ 354 (526)
..+ ....+. ..++....+++-|+...|...+ ++.. ..+ .| .++++
T Consensus 408 ~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~I 487 (713)
T PF00343_consen 408 ADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFI 487 (713)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEE
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEE
Confidence 000 001121 2556777899999999998777 3332 222 22 46788
Q ss_pred EEeCC-c---cHHHHHHH-------hcCC-------CeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHc
Q 009759 355 FIGDG-P---YREELEKM-------FTGM-------PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSS 414 (526)
Q Consensus 355 ivG~g-~---~~~~l~~l-------~~~~-------~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~ 414 (526)
+.|.. | ..+++-++ +... +|.|+...+-.-...++.+|||-+..++ .|..|..-+-+|..
T Consensus 488 FaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~N 567 (713)
T PF00343_consen 488 FAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMN 567 (713)
T ss_dssp EE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHT
T ss_pred EeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcC
Confidence 88842 1 11222222 1111 4788887766677789999999998776 69999999999999
Q ss_pred CCcEEEeCCCCCCceecccCCCceeEeeCC
Q 009759 415 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNP 444 (526)
Q Consensus 415 G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~ 444 (526)
|.+.+++-.|..-|+.... ..++++++..
T Consensus 568 GaL~lstlDG~niEi~e~v-G~eN~fiFG~ 596 (713)
T PF00343_consen 568 GALNLSTLDGWNIEIAEAV-GEENIFIFGL 596 (713)
T ss_dssp T-EEEEESSTCHHHHHHHH--GGGSEEES-
T ss_pred CCeEEecccchhHHHHHhc-CCCcEEEcCC
Confidence 9999999999888876211 2346777643
No 187
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.19 E-value=0.39 Score=45.75 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCCCcEEEEEeccccc-----------ccHHHHHHHHHhCCCcEEEEEeCC-----ccHHHHHHHhcCCCeEEecccChh
Q 009759 320 EPDKPLIVHVGRLGVE-----------KSLDFLKRVMDRLPEARIAFIGDG-----PYREELEKMFTGMPAVFTGMLLGE 383 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~-----------Kg~~~li~a~~~l~~~~l~ivG~g-----~~~~~l~~l~~~~~V~~~g~v~~~ 383 (526)
..+++.|++....... ...+.+.++++..|+.+++|==.. .....+.+.....++.+.. +.-
T Consensus 114 ~~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 191 (269)
T PF05159_consen 114 SKNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIID--DDV 191 (269)
T ss_pred cCCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEEC--CCC
Confidence 3456666666655333 123444455556688888774421 1223344433333444432 224
Q ss_pred hHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 384 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 384 ~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
.+.+++..||.++.-. +.+-+||+.+|+||++-...
T Consensus 192 ~~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 192 NLYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred CHHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 7889999999998543 67999999999999986443
No 188
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.18 E-value=0.31 Score=45.65 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=60.0
Q ss_pred CCCcEEEEEeccccccc--HHHHHHHHHhCC--CcEEEEEeCCcc--HHHHHHHhcCC---CeEEecccChhhHHHHHHc
Q 009759 321 PDKPLIVHVGRLGVEKS--LDFLKRVMDRLP--EARIAFIGDGPY--REELEKMFTGM---PAVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~Kg--~~~li~a~~~l~--~~~l~ivG~g~~--~~~l~~l~~~~---~V~~~g~v~~~~l~~~~~~ 391 (526)
++..+++..|.-.+.|. .+.+.+.++.+. ..+++++|.+.+ .+....+.... .+.+.|..+-.++..+++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 44556677777667776 344666666663 368888887655 33344444432 4778888877999999999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
||++|.+- ...+-=|.|.|+|+|+-
T Consensus 184 a~~~I~~D-----tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 184 ADLVIGND-----TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp SSEEEEES-----SHHHHHHHHTT--EEEE
T ss_pred CCEEEecC-----ChHHHHHHHHhCCEEEE
Confidence 99999654 34566699999999986
No 189
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.087 Score=56.04 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=88.7
Q ss_pred CCCCcEEEEEecccccccHHHHHHHH----HhC-----CCcEEEEEeCC-c---cHHHHHHHh----c----CCCeEEec
Q 009759 320 EPDKPLIVHVGRLGVEKSLDFLKRVM----DRL-----PEARIAFIGDG-P---YREELEKMF----T----GMPAVFTG 378 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~li~a~----~~l-----~~~~l~ivG~g-~---~~~~l~~l~----~----~~~V~~~g 378 (526)
.++...++++-|+...|...+.+.-+ ..+ |.+.+++.|.. | ..+.+-+++ + ..+|.|+.
T Consensus 484 ~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~ 563 (750)
T COG0058 484 DPNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLP 563 (750)
T ss_pred CCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeC
Confidence 35677889999999999866654322 222 33566677742 1 112222222 1 23588888
Q ss_pred ccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccC--CCceeEeeCCC
Q 009759 379 MLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ--DGKIGYLFNPG 445 (526)
Q Consensus 379 ~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~--~~~~g~~~~~~ 445 (526)
..+-.-...++.+|||-...|. .|..|..-+-++..|.+.|+|-.|..-|+. + .+.|||++...
T Consensus 564 nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~---e~vg~~N~~~fG~~ 631 (750)
T COG0058 564 NYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIY---EHVGGENGWIFGET 631 (750)
T ss_pred CCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHH---HhcCCCceEEeCCc
Confidence 7766666788999999988766 599999999999999999999999988888 5 78899998753
No 190
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.95 E-value=0.085 Score=56.81 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=88.8
Q ss_pred CCCCcEEEEEecccccccHHH-HHHHHHhC------C-----CcEEEEEeCC-c---cHHHHHH----Hhc---C-----
Q 009759 320 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEK----MFT---G----- 371 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~-li~a~~~l------~-----~~~l~ivG~g-~---~~~~l~~----l~~---~----- 371 (526)
.++...++++-|+...|...+ ++..+.++ | ..++++.|.. | ..+.+-+ ..+ .
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~ 619 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIG 619 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhc
Confidence 556777888999999999887 55543322 2 4678888842 1 1111111 111 1
Q ss_pred --CCeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCC--CceeEeeCC
Q 009759 372 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 444 (526)
Q Consensus 372 --~~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~--~~~g~~~~~ 444 (526)
.+|.|+....-.-...++.+||+-...|+ .|..|..=+-+|..|.+.++|-.|...|+. ++ +++||++..
T Consensus 620 ~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~---e~vG~eN~~~fG~ 695 (815)
T PRK14986 620 DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML---EHVGEENIFIFGN 695 (815)
T ss_pred CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHH---HhcCCCcEEEeCC
Confidence 14788877766667789999999998776 699999999999999999999999988888 54 788998864
No 191
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=95.77 E-value=2.1 Score=41.56 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=172.0
Q ss_pred ccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEE
Q 009759 132 YVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIH 209 (526)
Q Consensus 132 ~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~ 209 (526)
...|...-+.-|+..|++.. ++|.++..+...... .+. ......++ ...+.+.+. +.||++
T Consensus 16 W~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~-~~~-~~~~~~~~-------------~~~~~~~~~--~lDVlI 78 (364)
T PF10933_consen 16 WENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIP-AAL-MLDLLDVP-------------LVDFDDAID--ELDVLI 78 (364)
T ss_pred hhhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCC-ccc-ccccCCCc-------------eecHHHhcc--cCCEEE
Confidence 34677778888999998876 799999875542111 000 00000000 012223322 789998
Q ss_pred ECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccc-cccccccchHHHHHHHHhhcCcEEEeCChhH---HHHHHHhcc
Q 009759 210 ASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPR-YTFSWLVKPMWLVIKFLHRAADLTLVPSVAI---GKDLEAARV 285 (526)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~---~~~l~~~~~ 285 (526)
--+.....- -....+..|.++|....+..-...-. ..+..-. -..+.-...|.|++.-+.. ...+....
T Consensus 79 Emg~ql~~~-~~~~~~~~G~KvV~y~~GndYv~~~E~~lF~k~~-----~~~f~~~~yD~VW~lPq~~~~~~~yl~~l~- 151 (364)
T PF10933_consen 79 EMGAQLDPE-WLDYMRARGGKVVSYRCGNDYVMDIESMLFNKPS-----GHLFNGAPYDEVWTLPQFENTCAPYLETLH- 151 (364)
T ss_pred EccCccCHH-HHHHHHHcCCeEEEEeCCchHHHHhhHHhcCCCC-----CccCCCCCCceeEeccchhhhchHHHHHHh-
Confidence 876543322 22345778999999888743211000 0000000 0001124568887655432 33444443
Q ss_pred cCCCcEEEeecCCCCCCCCCCcccHH-HHHhhcCCC--CCCcEEEEEeccccccc---HHHHHHHH-HhCCC-cEEEEEe
Q 009759 286 TAANKIRIWKKGVDSESFHPRFRSSE-MRWRLSNGE--PDKPLIVHVGRLGVEKS---LDFLKRVM-DRLPE-ARIAFIG 357 (526)
Q Consensus 286 ~~~~ki~vi~ngid~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~vG~l~~~Kg---~~~li~a~-~~l~~-~~l~ivG 357 (526)
...+.++|.--++-++........ -..+++..+ ....+-+|=-+++-.|. .-++++.+ +.-|+ +..+.+-
T Consensus 152 --r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~~P~~v~~~~V~ 229 (364)
T PF10933_consen 152 --RCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYRADPDAVEHVYVT 229 (364)
T ss_pred --cCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHHhChhhcceEEEe
Confidence 357778876444433321111000 000122211 22233344455666665 23344444 44455 4444444
Q ss_pred CC---ccHHHHHHHhc------CCCeEEecccChhhHHHHHHc-CcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC
Q 009759 358 DG---PYREELEKMFT------GMPAVFTGMLLGEELSQAYAS-GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP 427 (526)
Q Consensus 358 ~g---~~~~~l~~l~~------~~~V~~~g~v~~~~l~~~~~~-aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~ 427 (526)
+. .+...+..++. .....|.|.. ++..+++. .|++|.--...+...--+|++.-|=|.|-. .
T Consensus 230 Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~VvSHqWeN~lNYlY~daLyggYPLVHN-----S 301 (364)
T PF10933_consen 230 NTYHLKEHPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDAVVSHQWENPLNYLYYDALYGGYPLVHN-----S 301 (364)
T ss_pred cchhhhcCHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCEEEeccccchhhHHHHHHHhcCCCcccC-----c
Confidence 22 12223333333 2247788887 56666655 599886666667788899999999999953 3
Q ss_pred ceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHhCCHHHH
Q 009759 428 DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAA 483 (526)
Q Consensus 428 e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~~a~~~~~~fs~~~~ 483 (526)
.++ ++.|+.++..|..+=+++|.+++. ....++...+++++.+..++..+-
T Consensus 302 ~~l-----~d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~n~ 353 (364)
T PF10933_consen 302 PLL-----KDVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDRLSPENP 353 (364)
T ss_pred chh-----cccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhCCCCH
Confidence 455 347999999999999999988887 445678888888888876665543
No 192
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.66 E-value=1.4 Score=45.57 Aligned_cols=178 Identities=12% Similarity=0.187 Sum_probs=114.5
Q ss_pred CCCCcEEEEEeccc--ccccHHHHHHHHHhCCCcEEEEEe-----CCccHHHHHHHhcCC-CeEEecccChhhHHHHHHc
Q 009759 320 EPDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIG-----DGPYREELEKMFTGM-PAVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 320 ~~~~~~i~~vG~l~--~~Kg~~~li~a~~~l~~~~l~ivG-----~g~~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~ 391 (526)
+++..+++.+..+. ..+-++...++++..|+-.|.+.- .......++++.-+. +|.|..-...+|-..-.+-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~L 835 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQL 835 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhh
Confidence 44555555555553 345577778888999987766644 322333333332222 5888877777787888889
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceeccc--CCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHH
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 469 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~--~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~ 469 (526)
+||.+-+-...|. .+-+|.+.+|+|+|+-....++.-+... ..-+.|-++ ..+.++..+.-.++-.|.+..++++.
T Consensus 836 aDv~LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli-ak~~eEY~~iaV~Latd~~~L~~lr~ 913 (966)
T KOG4626|consen 836 ADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI-AKNREEYVQIAVRLATDKEYLKKLRA 913 (966)
T ss_pred hhhcccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH-hhhHHHHHHHHHHhhcCHHHHHHHHH
Confidence 9999865443332 3567899999999975432221111000 011122222 23788899888899899999999888
Q ss_pred HHHHHH-H--hCCHHHHHHHHHHHHHHHHHHHHH
Q 009759 470 AARQEM-E--KYDWRAATRTIRNEQYNAAIWFWR 500 (526)
Q Consensus 470 ~a~~~~-~--~fs~~~~~~~~~~~ly~~~l~~~~ 500 (526)
.-+... . -|+-...+..++ .+|.+.-+.+-
T Consensus 914 ~l~~~r~~splfd~~q~~~~LE-~~y~~MW~~y~ 946 (966)
T KOG4626|consen 914 KLRKARASSPLFDTKQYAKGLE-RLYLQMWKKYC 946 (966)
T ss_pred HHHHHhcCCCccCchHHHHHHH-HHHHHHHHHhc
Confidence 777765 3 499999999996 88888755543
No 193
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=95.33 E-value=0.044 Score=41.05 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=43.3
Q ss_pred ccchhcccHHHHHHHHhcCCCEEEECCC-chHHHHHHHHHHhcCCCEEEEEecCC
Q 009759 186 VPLSLALSPRIISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHV 239 (526)
Q Consensus 186 ~~~~~~~~~~l~~~l~~~~pDiV~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~ 239 (526)
.+..+.....++.++.+++.||||.|.. ..+...+++-++..|.+.|++-|..+
T Consensus 32 ~Pt~~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHSLf 86 (90)
T PF08288_consen 32 LPTLFGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHSLF 86 (90)
T ss_pred hHHHHHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeeccccc
Confidence 4445566677888888999999999986 44456678889999999999999865
No 194
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.30 E-value=0.17 Score=54.60 Aligned_cols=122 Identities=18% Similarity=0.247 Sum_probs=88.0
Q ss_pred CCCCcEEEEEecccccccHHH-HHHHHHh---C---C-----CcEEEEEeCC-c---cHHHH-------HHHhcC-----
Q 009759 320 EPDKPLIVHVGRLGVEKSLDF-LKRVMDR---L---P-----EARIAFIGDG-P---YREEL-------EKMFTG----- 371 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~-li~a~~~---l---~-----~~~l~ivG~g-~---~~~~l-------~~l~~~----- 371 (526)
.++....+++-|+...|...+ ++..+.+ + | ..++++.|.. | ..+.+ .+.+..
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 606 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVG 606 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcC
Confidence 567778899999999999888 5554332 2 3 3678888842 1 11121 121111
Q ss_pred --CCeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCC--CceeEeeCC
Q 009759 372 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 444 (526)
Q Consensus 372 --~~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~--~~~g~~~~~ 444 (526)
.+|.|+....-.-...++.+|||-...|+ .|..|..=+-+|..|.+.++|-.|...|+. ++ +++++++..
T Consensus 607 ~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~---e~vG~eN~fiFG~ 682 (797)
T cd04300 607 DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIA---EEVGEENIFIFGL 682 (797)
T ss_pred CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHH---HHhCcCcEEEeCC
Confidence 14788877766677789999999998776 589999999999999999999999888887 44 678888753
No 195
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.23 E-value=0.071 Score=57.16 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=87.0
Q ss_pred CCCCcEEEEEecccccccHHH-HHHHHHhC------C-----CcEEEEEeCC-c---cHHHH-------HHHhcC-----
Q 009759 320 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREEL-------EKMFTG----- 371 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~-li~a~~~l------~-----~~~l~ivG~g-~---~~~~l-------~~l~~~----- 371 (526)
.++...++++-|+...|...+ ++..+..+ | ..++++.|.. | ..+.+ .+.+++
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 605 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVG 605 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhC
Confidence 456667788889999999877 55443222 3 3678888842 1 11121 122211
Q ss_pred --CCeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCC--CceeEeeCC
Q 009759 372 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 444 (526)
Q Consensus 372 --~~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~--~~~g~~~~~ 444 (526)
.+|.|+....-.-...++.+||+-...|+ .|..|..=+-+|..|.+.|+|-.|...|+. ++ +++||++..
T Consensus 606 ~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~---e~vG~eN~f~fG~ 681 (798)
T PRK14985 606 DKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIA---EQVGEENIFIFGH 681 (798)
T ss_pred CceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHH---HHhCcCcEEEeCC
Confidence 14888887766677789999999998776 689999999999999999999999888887 43 678888753
No 196
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.86 E-value=0.11 Score=55.78 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=87.2
Q ss_pred CCCCcEEEEEecccccccHHH-HHHHHHhC------C-----CcEEEEEeCC-c---cHHHHHHH----h---cC-----
Q 009759 320 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEKM----F---TG----- 371 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~-li~a~~~l------~-----~~~l~ivG~g-~---~~~~l~~l----~---~~----- 371 (526)
.++....+++-|+...|...+ ++..+..+ | ..++++.|.. | ..+.+-++ + ..
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~ 603 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVG 603 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhC
Confidence 456677788889999999887 55544322 2 3578888842 1 11222111 1 11
Q ss_pred --CCeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCC--CceeEeeCC
Q 009759 372 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNP 444 (526)
Q Consensus 372 --~~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~--~~~g~~~~~ 444 (526)
.+|.|+....-.-...++.+||+-...|+ .|..|..=+-+|..|.+.|+|-.|...|+. ++ ++|++++..
T Consensus 604 ~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~---e~vG~eN~fiFG~ 679 (794)
T TIGR02093 604 DKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIR---EEVGAENIFIFGL 679 (794)
T ss_pred CceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHH---HHhCcccEEEcCC
Confidence 14888887766677789999999998776 589999999999999999999999888887 44 678887753
No 197
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=94.02 E-value=3.4 Score=41.50 Aligned_cols=221 Identities=10% Similarity=0.094 Sum_probs=119.6
Q ss_pred HhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHH-HhhcCC-CCCCcEEEEEecccccc---
Q 009759 262 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR-WRLSNG-EPDKPLIVHVGRLGVEK--- 336 (526)
Q Consensus 262 ~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~vG~l~~~K--- 336 (526)
.....|.+.+.+......+.+.++....++.....+-....+.......... .+..+. +.++.+|+|.-.+....
T Consensus 145 ~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~ 224 (388)
T COG1887 145 VRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLI 224 (388)
T ss_pred eeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCcccc
Confidence 3456788888888887777777766666666555444433333332222221 122222 44688899988876654
Q ss_pred c---HHHH--HHHHH-hC--CCcEEEEEeCCccHHHHHHHhcCCCeEEecccC-hhhHHHHHHcCcEEEecCCCCCCcHH
Q 009759 337 S---LDFL--KRVMD-RL--PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESETLGLV 407 (526)
Q Consensus 337 g---~~~l--i~a~~-~l--~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~-~~~l~~~~~~aDv~v~ps~~e~~~~~ 407 (526)
+ .... +..+. .+ .++.+++-=.....+.......... +.-.++ ..++.++|..+|++| .-++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~~~~ii~k~Hp~is~~~~~~~~~~~--~~~~vs~~~di~dll~~sDiLI-----TDySSv 297 (388)
T COG1887 225 GTQFFNLDIDIEKLKEKLGENEYVIIVKPHPLISDKIDKRYALDD--FVLDVSDNADINDLLLVSDILI-----TDYSSV 297 (388)
T ss_pred chhhhhhhhhHHHHHHhhccCCeEEEEecChhhhhhhhhhhhccc--eeEecccchhHHHHHhhhCEEE-----eechHH
Confidence 2 2222 22222 22 2444444332211111111111111 222233 379999999999999 556889
Q ss_pred HHHHHHcCCcEEEeCCC--C---CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHH
Q 009759 408 VLEAMSSGIPVVGVRAG--G---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 482 (526)
Q Consensus 408 ilEAma~G~PvI~~~~g--g---~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~ 482 (526)
..|+|...+|||....- . ......+.+....|-++. +.+++.++|.....+.+...+..+...+.+..+.-.+
T Consensus 298 ~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~--~~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~~~dg~ 375 (388)
T COG1887 298 IFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE--TQEELIDAIKPYDEDGNYDLEKLRVFNDKFNSYEDGR 375 (388)
T ss_pred HHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc--cHHHHHHHHHhhhcccchhHHHHHHHHHhhccccccc
Confidence 99999999999965221 1 111221112334566666 8889999999988755443333332333333333355
Q ss_pred HHHHHHHHH
Q 009759 483 ATRTIRNEQ 491 (526)
Q Consensus 483 ~~~~~~~~l 491 (526)
..+++.+.+
T Consensus 376 ss~ri~~~i 384 (388)
T COG1887 376 SSERILKLI 384 (388)
T ss_pred HHHHHHHHH
Confidence 555554333
No 198
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=93.81 E-value=1.1 Score=46.86 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=82.8
Q ss_pred CcEEEEEeccc-----ccccHHHHHHHHHhCCCcEEEEEeCCccHHHH-HHHhc--CCCeEEecccChhhHHHHHHcC--
Q 009759 323 KPLIVHVGRLG-----VEKSLDFLKRVMDRLPEARIAFIGDGPYREEL-EKMFT--GMPAVFTGMLLGEELSQAYASG-- 392 (526)
Q Consensus 323 ~~~i~~vG~l~-----~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l-~~l~~--~~~V~~~g~v~~~~l~~~~~~a-- 392 (526)
..+++..|... +.+-...+..+++.++++.|+..=.+.....+ +...+ ..+|...+|+|+.++. +...
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~ll--l~H~~v 355 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLL--LDHPAV 355 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHh--cCCCcC
Confidence 55666778775 34557778899998877876655433222212 22221 2368888999987765 2222
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCcEEEeCC-CC---CCceecccCCCceeEeeCC-CCHHHHHHHHHHhhhCHHHHHHH
Q 009759 393 DVFVMPSESETLGLVVLEAMSSGIPVVGVRA-GG---IPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETM 467 (526)
Q Consensus 393 Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~-gg---~~e~v~~~~~~~~g~~~~~-~d~~~la~ai~~ll~d~~~~~~~ 467 (526)
.++| + +.|++ +++|++.+|+|+|+... |. ....+. +++..+.+... .....+.+++..++.+++..+..
T Consensus 356 ~~Fv--T-HgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~--~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~ 429 (496)
T KOG1192|consen 356 GGFV--T-HGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLV--RHGGGGVLDKRDLVSEELLEAIKEILENEEYKEAA 429 (496)
T ss_pred cEEE--E-CCccc-HHHHHHhcCCceecCCccccchhHHHHHH--hCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHH
Confidence 2333 1 23444 55999999999996543 21 222221 44555555432 22333888999998887765554
Q ss_pred HHHHH
Q 009759 468 GQAAR 472 (526)
Q Consensus 468 ~~~a~ 472 (526)
.+-+.
T Consensus 430 ~~l~~ 434 (496)
T KOG1192|consen 430 KRLSE 434 (496)
T ss_pred HHHHH
Confidence 44333
No 199
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=92.91 E-value=0.46 Score=46.00 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=50.1
Q ss_pred hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcC-CcEEEeCCC--CCCceecccCCCceeEeeCCCCHHHHHHHHH
Q 009759 383 EELSQAYASGDVFVMPSESETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 455 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G-~PvI~~~~g--g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~ 455 (526)
.+..+.|+++.++++|.-...+..-++|||++| +|||.++.- ...+++ .-....+.++..+..++.+.|.
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l---dw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL---DWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc---CHHHEEEEECHHHHHHHHHHHh
Confidence 468899999999999887767889999999999 566665422 345555 4455666776666655555554
No 200
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.08 E-value=0.34 Score=37.99 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=52.1
Q ss_pred EEEEeC-CccHHHHHHHhcCCC--eEEe---cccChhh--HHHHHHcCcEEEecCCC---CCCcHHHHHHHHcCCcEEEe
Q 009759 353 IAFIGD-GPYREELEKMFTGMP--AVFT---GMLLGEE--LSQAYASGDVFVMPSES---ETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 353 l~ivG~-g~~~~~l~~l~~~~~--V~~~---g~v~~~~--l~~~~~~aDv~v~ps~~---e~~~~~ilEAma~G~PvI~~ 421 (526)
++|+|. ......+++..++.+ ..++ +...... +...+..+|++|++..+ +.+-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 566774 456677777777665 3334 3333334 88999999999998764 33444556778889999988
Q ss_pred CCCCCCce
Q 009759 422 RAGGIPDI 429 (526)
Q Consensus 422 ~~gg~~e~ 429 (526)
+..+...+
T Consensus 82 ~~~~~~~l 89 (97)
T PF10087_consen 82 RSRGVSSL 89 (97)
T ss_pred CCCCHHHH
Confidence 76655443
No 201
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=90.46 E-value=1 Score=39.89 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=44.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCe--EEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDE--VMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~--V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||+++... .+.....+.++|.+.+++ +..+.++...................... ......-.....+
T Consensus 1 mrI~~~~Sg--------~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 71 (181)
T PF00551_consen 1 MRIVFFGSG--------SGSFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADE-KNFQPRSENDEEL 71 (181)
T ss_dssp EEEEEEESS--------SSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHG-GGSSSHHHHHHHH
T ss_pred CEEEEEEcC--------CCHHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEeccc-cCCCchHhhhhHH
Confidence 899999752 226678889999999997 44444443322210000000000000000 0000111223467
Q ss_pred HHHHHhcCCCEEEECCCc
Q 009759 197 ISEVARFKPDIIHASSPG 214 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~ 214 (526)
.+.+++.+||++++..+.
T Consensus 72 ~~~l~~~~~Dl~v~~~~~ 89 (181)
T PF00551_consen 72 LELLESLNPDLIVVAGYG 89 (181)
T ss_dssp HHHHHHTT-SEEEESS-S
T ss_pred HHHHHhhccceeehhhhH
Confidence 888999999999998754
No 202
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=89.50 E-value=2.6 Score=35.31 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=54.7
Q ss_pred cEEEEEecccccccHHHHHHHH---------HhCCCcEEEE-EeCC-cc-HHHHHHHhcCCCeEEecccChhhHHHHHHc
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVM---------DRLPEARIAF-IGDG-PY-REELEKMFTGMPAVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~---------~~l~~~~l~i-vG~g-~~-~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~ 391 (526)
-+++.+|.-. +|.|+.++ .+..=.+++| +|.| .. .+......+..+..+.||--...+.+.++.
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 3567777644 55555433 2222235544 6765 21 122222212335566665444688999999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
||++| ..+..++++|.+..|+|.|+.
T Consensus 81 AdlVI----sHAGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 81 ADLVI----SHAGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred ccEEE----ecCCcchHHHHHHcCCCEEEE
Confidence 99999 445567999999999998765
No 203
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=89.00 E-value=0.48 Score=39.08 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=31.6
Q ss_pred hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC
Q 009759 383 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP 427 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~ 427 (526)
+++.+++..+|++|--|..+..--.+-.++.+|+|+|...+|...
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 568899999999998776555555677788999999988777543
No 204
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.11 E-value=0.82 Score=37.16 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=27.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+|+.+. .....-.......|+.+.+++||+|.++..+.
T Consensus 1 Mki~fvmDp--i~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDP--IESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES---GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCC--HHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 899999873 33333344678889999999999999998754
No 205
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=87.92 E-value=1.8 Score=37.80 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=30.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF 167 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~ 167 (526)
|||+++... +..-..++++..++||+|+-++.+.......
T Consensus 1 mKIaiIgAs---------G~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~ 40 (211)
T COG2910 1 MKIAIIGAS---------GKAGSRILKEALKRGHEVTAIVRNASKLAAR 40 (211)
T ss_pred CeEEEEecC---------chhHHHHHHHHHhCCCeeEEEEeChHhcccc
Confidence 899999652 2444668899999999999999887654443
No 206
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=87.61 E-value=23 Score=35.70 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=66.1
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCC
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 401 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~ 401 (526)
....++++|. .+-..++.+.+..-.--+++|++.. .+..++++++.+. ..++.+++..++..+|+++..+..
T Consensus 177 ~~~~vlvIGA---Gem~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~~---~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 177 KDKKVLVIGA---GEMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLGA---EAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred ccCeEEEEcc---cHHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhCC---eeecHHHHHHhhhhCCEEEEecCC
Confidence 4445677763 2334444454444323466666643 4555566665552 244558999999999999976432
Q ss_pred --CCCcHH-HHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHH
Q 009759 402 --ETLGLV-VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 451 (526)
Q Consensus 402 --e~~~~~-ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la 451 (526)
--.+.. +-+++.--...+.-|.+-.+++-+...+-.+.++++-+|.+.++
T Consensus 249 ~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv 301 (414)
T COG0373 249 PHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIV 301 (414)
T ss_pred CccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHH
Confidence 222333 33444444445777777666654211122334566544544443
No 207
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.35 E-value=7.5 Score=30.30 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
||.+.....+-+.+.+.|.+..+. ...+..... ...+...++ ++|+|++...
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~-------------------------~~~l~~~i~--~aD~VIv~t~ 57 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH-GRDGGDEKK-------------------------ASRLPSKIK--KADLVIVFTD 57 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE-ecCCCCccc-------------------------hhHHHHhcC--CCCEEEEEeC
Confidence 787888999999999999999888 222111100 012333333 7899888543
Q ss_pred ---chHHHHHHHHHHhcCCCEEEE
Q 009759 214 ---GIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 214 ---~~~~~~~~~~~~~~~~p~v~~ 234 (526)
+.....+--.++..++|+++.
T Consensus 58 ~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 58 YVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred CcChHHHHHHHHHHHHcCCcEEEE
Confidence 333444556778889999875
No 208
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.38 E-value=11 Score=34.70 Aligned_cols=129 Identities=21% Similarity=0.242 Sum_probs=72.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|+|+++ |.++.-..+|+.|.+.||+|.++-.+.....++.... .....+.. -.......+
T Consensus 1 m~iiIi----------G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-~~~~~v~g---------d~t~~~~L~ 60 (225)
T COG0569 1 MKIIII----------GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE-LDTHVVIG---------DATDEDVLE 60 (225)
T ss_pred CEEEEE----------CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh-cceEEEEe---------cCCCHHHHH
Confidence 567666 4557889999999999999999987654322211100 00000100 011123333
Q ss_pred HHHhcCCCEEEECCC--chHHHHHHHHHHhcCCCEEEE-EecCCcccccccccccccchHHHHHHHHhh-cCcEEEeCCh
Q 009759 199 EVARFKPDIIHASSP--GIMVFGALIIAKLLCVPIVMS-YHTHVPVYIPRYTFSWLVKPMWLVIKFLHR-AADLTLVPSV 274 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~--~~~~~~~~~~~~~~~~p~v~~-~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~S~ 274 (526)
.+--.+.|++++... ......+.+..+.+++|.++. .++... .+.+.+ .+|.++.+..
T Consensus 61 ~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~------------------~~~~~~~g~~~ii~Pe~ 122 (225)
T COG0569 61 EAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEH------------------EKVLEKLGADVIISPEK 122 (225)
T ss_pred hcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHH------------------HHHHHHcCCcEEECHHH
Confidence 333347898888553 333444555556678886653 333211 111111 2789999888
Q ss_pred hHHHHHHHhcc
Q 009759 275 AIGKDLEAARV 285 (526)
Q Consensus 275 ~~~~~l~~~~~ 285 (526)
...+.+.....
T Consensus 123 ~~~~~l~~~i~ 133 (225)
T COG0569 123 LAAKRLARLIV 133 (225)
T ss_pred HHHHHHHHHhc
Confidence 88888877643
No 209
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=85.34 E-value=4.6 Score=31.62 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=47.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE-EeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV-TTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
||||++.+ | -+=..++..|.+.-.--.++ .+++....... ... . ....-...+.
T Consensus 1 MkVLviGs-------G---gREHAia~~l~~s~~v~~v~~aPGN~G~~~~~--~~~-----~--------~~~~d~~~l~ 55 (100)
T PF02844_consen 1 MKVLVIGS-------G---GREHAIAWKLSQSPSVEEVYVAPGNPGTAELG--KNV-----P--------IDITDPEELA 55 (100)
T ss_dssp EEEEEEES-------S---HHHHHHHHHHTTCTTEEEEEEEE--TTGGGTS--EEE--------------S-TT-HHHHH
T ss_pred CEEEEECC-------C---HHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc--eec-----C--------CCCCCHHHHH
Confidence 89999964 3 34567888887763222333 34433222211 110 0 1223346888
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
++.++.++|+|++.-..+......-..+..|+|++
T Consensus 56 ~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 56 DFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 99999999999997643333222333455677765
No 210
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=85.18 E-value=3 Score=37.60 Aligned_cols=86 Identities=16% Similarity=0.279 Sum_probs=45.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||++++. |.+..+..+.+++.+.+ ++|.++.++.....-....+..+++.+.... ........+...+
T Consensus 2 ~ki~vl~s--------g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~-~~~~~~~~~~~~~ 72 (200)
T PRK05647 2 KRIVVLAS--------GNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDH-KDFPSREAFDAAL 72 (200)
T ss_pred ceEEEEEc--------CCChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECc-cccCchhHhHHHH
Confidence 79999975 33466778888888765 6676655543211110001111121111100 0000011123466
Q ss_pred HHHHHhcCCCEEEECCC
Q 009759 197 ISEVARFKPDIIHASSP 213 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~ 213 (526)
.+.+++.+||++++..+
T Consensus 73 ~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 73 VEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHHhCcCEEEhHHh
Confidence 78888999999988664
No 211
>PRK06849 hypothetical protein; Provisional
Probab=84.61 E-value=2 Score=43.30 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.+||||++. |.....+.+++.|.+.||+|+++............ .+......+.+.. ..-.+...+
T Consensus 3 ~~~~VLI~G---------~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~-~~d~~~~~p~p~~----d~~~~~~~L 68 (389)
T PRK06849 3 TKKTVLITG---------ARAPAALELARLFHNAGHTVILADSLKYPLSRFSR-AVDGFYTIPSPRW----DPDAYIQAL 68 (389)
T ss_pred CCCEEEEeC---------CCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-hhhheEEeCCCCC----CHHHHHHHH
Confidence 468998873 33346899999999999999999765422110000 0000011111110 112245678
Q ss_pred HHHHHhcCCCEEEECCCc
Q 009759 197 ISEVARFKPDIIHASSPG 214 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~ 214 (526)
.++++++++|+|+.....
T Consensus 69 ~~i~~~~~id~vIP~~e~ 86 (389)
T PRK06849 69 LSIVQRENIDLLIPTCEE 86 (389)
T ss_pred HHHHHHcCCCEEEECChH
Confidence 888999999999987643
No 212
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=84.49 E-value=36 Score=31.89 Aligned_cols=220 Identities=14% Similarity=0.078 Sum_probs=113.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc-cCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF-YGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
|||+++. | ..-...+++.|.+.|+ |.+-+......... ...... .. ....+.....+.
T Consensus 1 m~ILvlg---------G-TtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~--~v--------~~G~lg~~~~l~ 59 (249)
T PF02571_consen 1 MKILVLG---------G-TTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGL--EV--------RVGRLGDEEGLA 59 (249)
T ss_pred CEEEEEe---------c-hHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCc--eE--------EECCCCCHHHHH
Confidence 8998883 2 2446899999999998 55443322111100 000000 00 001111345888
Q ss_pred HHHHhcCCCEEEECCCchH---HHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 198 SEVARFKPDIIHASSPGIM---VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~---~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
.++++.++++|+=-+.++. .-.+..+++..++|++-.....+... ...+.+.+.|-
T Consensus 60 ~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~---------------------~~~~~~~v~~~ 118 (249)
T PF02571_consen 60 EFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPE---------------------PDDNWHYVDSY 118 (249)
T ss_pred HHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccC---------------------CCCeEEEeCCH
Confidence 9999999998876443222 22355577888999987665533210 01122222222
Q ss_pred hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEE
Q 009759 275 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIA 354 (526)
Q Consensus 275 ~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ 354 (526)
..+-.+... ...+.+++..|+ |.+..+.. ....+.+++
T Consensus 119 ~eA~~~l~~------------------------------------~~~~~iflttGs----k~L~~f~~--~~~~~~r~~ 156 (249)
T PF02571_consen 119 EEAAELLKE------------------------------------LGGGRIFLTTGS----KNLPPFVP--APLPGERLF 156 (249)
T ss_pred HHHHHHHhh------------------------------------cCCCCEEEeCch----hhHHHHhh--cccCCCEEE
Confidence 222211100 122345666664 55555554 222233332
Q ss_pred E--EeCCccHHHHHHHh-cCCC-eEEecccChhhHHHHHHcCcE--EEec-CCCCCCcHHHHHHHHcCCcEEEeCCCCCC
Q 009759 355 F--IGDGPYREELEKMF-TGMP-AVFTGMLLGEELSQAYASGDV--FVMP-SESETLGLVVLEAMSSGIPVVGVRAGGIP 427 (526)
Q Consensus 355 i--vG~g~~~~~l~~l~-~~~~-V~~~g~v~~~~l~~~~~~aDv--~v~p-s~~e~~~~~ilEAma~G~PvI~~~~gg~~ 427 (526)
+ +=..+. .+. ...+ +...|..+.+.=..+++...+ +|.= |-..|+.-|+--|..+|+|||.-.-+...
T Consensus 157 ~RvLp~~~~-----~~g~~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 157 ARVLPTPES-----ALGFPPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred EEECCCccc-----cCCCChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 2 221111 110 1112 556777776655677776544 4432 22337778999999999999988766544
No 213
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=84.29 E-value=5.4 Score=35.60 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=46.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--eEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--EVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||++++. |.+..+..+++++.+.+. +|.++.++..........+..+++.+.... ......-.+-..+
T Consensus 1 ~riail~s--------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~-~~~~~~~~~~~~~ 71 (190)
T TIGR00639 1 KRIVVLIS--------GNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSL-KDFPSREAFDQAI 71 (190)
T ss_pred CeEEEEEc--------CCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECc-cccCchhhhhHHH
Confidence 68988875 444667888898988765 666555554221111001111111111000 0111111223467
Q ss_pred HHHHHhcCCCEEEECCCc
Q 009759 197 ISEVARFKPDIIHASSPG 214 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~ 214 (526)
.+.+++.++|++++..+.
T Consensus 72 ~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 72 IEELRAHEVDLVVLAGFM 89 (190)
T ss_pred HHHHHhcCCCEEEEeCcc
Confidence 888999999999987753
No 214
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=83.84 E-value=7.6 Score=36.09 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=50.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCc---------------eeccccccC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGA---------------KLIGSRSFP 179 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~---------------~~~~~~~~~ 179 (526)
....++|++|..+ | .=-+..+-..+..+.++|++|.+++...+......+. .+.++....
T Consensus 7 ~~~~~~vL~v~aH-P----DDe~~g~ggtla~~~~~G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~~~ 81 (237)
T COG2120 7 MLDPLRVLVVFAH-P----DDEEIGCGGTLAKLAARGVEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGVRETI 81 (237)
T ss_pred cccCCcEEEEecC-C----cchhhccHHHHHHHHHCCCeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCCCcce
Confidence 4556899888653 3 1222333445566689999999999765433222111 122222111
Q ss_pred CCccc---cccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 180 CPWYQ---KVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 180 ~~~~~---~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
.-.+. ...........+.+++.+.+||+|+++.+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~ 118 (237)
T COG2120 82 FLGFPDTGADADPEEITGALVAIIRRLRPDVVFTPYP 118 (237)
T ss_pred ecCCCccccccChHHHHHHHHHHHHHhCCCEEEecCC
Confidence 00011 01111223346788888889998887654
No 215
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=83.72 E-value=6.6 Score=38.01 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=30.5
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+++||++++... .+...-.-.....+.++|.+.||+|.++...
T Consensus 3 ~~~~v~~~~g~~-~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGT-SAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCC-CCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 346899887542 2433333345689999999999999998644
No 216
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=83.65 E-value=2 Score=32.15 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=48.5
Q ss_pred HHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccc
Q 009759 261 FLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 333 (526)
Q Consensus 261 ~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~ 333 (526)
.+...+|.|++......+.+++.+. .++..+|-++++..+.+....... ...-.-.|.|||++-
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~~G~---~~V~yLPLAa~~~~~~p~~~~~~~------~~~~~~dIsFVG~~y 77 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRNLGA---ENVFYLPLAANPERFRPIPVDPEE------RKKYECDISFVGSLY 77 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHHcCC---CCEEEccccCCHHHhCcccCCccc------ccccCCCEEEeCcCc
Confidence 4567899999999999999999764 699999999999999887432110 022344699999864
No 217
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=82.99 E-value=6.7 Score=40.08 Aligned_cols=93 Identities=16% Similarity=0.002 Sum_probs=50.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe-CCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT-HEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
+.||||++.. | .+-..|+..|.+.++-+.+++. ++........ . .... ....-...
T Consensus 3 ~~~kvLviG~-------g---~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~--~---~~~~--------~~~~d~~~ 59 (426)
T PRK13789 3 VKLKVLLIGS-------G---GRESAIAFALRKSNLLSELKVFPGNGGFPDDEL--L---PADS--------FSILDKSS 59 (426)
T ss_pred CCcEEEEECC-------C---HHHHHHHHHHHhCCCCCEEEEECCchHHhcccc--c---cccC--------cCcCCHHH
Confidence 4599999943 2 4567789999998865555553 2221111000 0 0000 11223457
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+.+++++.++|+|++...........-.....|+|++
T Consensus 60 l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 60 VQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred HHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 7888899999999986433222222223345666643
No 218
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=82.84 E-value=2.2 Score=40.99 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=38.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||||+ ||.+..-..+.+.|.+.|++|..+... ...+.-...+.+
T Consensus 1 MriLI~---------GasG~lG~~l~~~l~~~~~~v~~~~r~--------------------------~~dl~d~~~~~~ 45 (286)
T PF04321_consen 1 MRILIT---------GASGFLGSALARALKERGYEVIATSRS--------------------------DLDLTDPEAVAK 45 (286)
T ss_dssp EEEEEE---------TTTSHHHHHHHHHHTTTSEEEEEESTT--------------------------CS-TTSHHHHHH
T ss_pred CEEEEE---------CCCCHHHHHHHHHHhhCCCEEEEeCch--------------------------hcCCCCHHHHHH
Confidence 899888 445566778899999999887776332 011222357788
Q ss_pred HHHhcCCCEEEEC
Q 009759 199 EVARFKPDIIHAS 211 (526)
Q Consensus 199 ~l~~~~pDiV~~~ 211 (526)
++.+.+||+|+-.
T Consensus 46 ~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 46 LLEAFKPDVVINC 58 (286)
T ss_dssp HHHHH--SEEEE-
T ss_pred HHHHhCCCeEecc
Confidence 8888899987654
No 219
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=82.67 E-value=1.9 Score=36.01 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+|.-.-+..++++|+++||+|.+.+...
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 5666778999999999999999887643
No 220
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=82.19 E-value=10 Score=38.83 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=50.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.||||++.. +.+...++..|++.|++|.++..+. .+... .+... + ......-...+.
T Consensus 2 ~~kVLvlG~----------G~re~al~~~l~~~g~~v~~~~~~~-Npg~~---~~a~~--~-------~~~~~~d~e~l~ 58 (435)
T PRK06395 2 TMKVMLVGS----------GGREDAIARAIKRSGAILFSVIGHE-NPSIK---KLSKK--Y-------LFYDEKDYDLIE 58 (435)
T ss_pred ceEEEEECC----------cHHHHHHHHHHHhCCCeEEEEECCC-Chhhh---hcccc--e-------eecCCCCHHHHH
Confidence 489999743 2456778888999998887774421 11100 00000 0 001112336888
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
++++++++|+|++...........-.....|+|++
T Consensus 59 ~~~~~~~id~Vi~~~d~~l~~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 59 DFALKNNVDIVFVGPDPVLATPLVNNLLKRGIKVA 93 (435)
T ss_pred HHHHHhCCCEEEECCChHHHHHHHHHHHHCCCcEE
Confidence 89999999999987533222211111234477755
No 221
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=82.19 E-value=13 Score=32.21 Aligned_cols=114 Identities=21% Similarity=0.149 Sum_probs=65.5
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCC-Cccc-------cCc-eeccccccCCCccccccch
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGV-PQEF-------YGA-KLIGSRSFPCPWYQKVPLS 189 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~-~~~~-------~~~-~~~~~~~~~~~~~~~~~~~ 189 (526)
+|+++.++.. ....-....+...++.|.+. |.+|+++..+... .... .+. +++.+. .+.... ...
T Consensus 1 ~ilv~~e~~~-~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~---~~~~~~-~~~ 75 (164)
T PF01012_consen 1 NILVFAEHRD-GRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHID---DPALAE-YDP 75 (164)
T ss_dssp EEEEEE-EET-CEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE----GGGTT-C-H
T ss_pred CEEEEEECCC-CccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEec---Cccccc-cCH
Confidence 5777877532 33344566678888899876 7899988877411 1111 121 121111 111110 112
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
..+...+.+.+++.+||+|++.......-.+..++.+++.+++..+.+.
T Consensus 76 ~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~l 124 (164)
T PF01012_consen 76 EAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTDL 124 (164)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEEE
Confidence 2355678888899999999997754444445567788899998877763
No 222
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=80.77 E-value=2.7 Score=37.71 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=28.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||||+.-+. |=.+.-+..|.++|++.||+|.|+++..+
T Consensus 1 M~ILlTNDD------Gi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDD------GIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-------TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCC------CCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 899777552 22345688999999888999999998764
No 223
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=80.19 E-value=3.6 Score=34.03 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=32.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCe-EEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDE-VMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~-V~vi~~~~~ 162 (526)
||++|+....|+ .+-..+..+.+++++.+.||+ |.|+...++
T Consensus 1 m~~~iv~~~~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 43 (128)
T PRK00207 1 MRYAIAVTGPAY--GTQQASSAYQFAQALLAEGHELVSVFFYQDG 43 (128)
T ss_pred CEEEEEEcCCCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEehHH
Confidence 899999887554 344557789999999999998 477766543
No 224
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=79.66 E-value=8.2 Score=36.95 Aligned_cols=87 Identities=8% Similarity=0.103 Sum_probs=49.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..++|||+++... .+.-+..|+++.... +++|.++..+....... .+..+++.+..+... ......
T Consensus 86 ~~~~~ri~vl~Sg--------~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~l--A~~~gIp~~~~~~~~--~~~~~~ 153 (286)
T PRK13011 86 PAARPKVLIMVSK--------FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL--AAWHGIPFHHFPITP--DTKPQQ 153 (286)
T ss_pred cccCceEEEEEcC--------CcccHHHHHHHHHcCCCCcEEEEEEECCccHHHH--HHHhCCCEEEeCCCc--Cchhhh
Confidence 4457899999762 245567777777654 57888877654322211 111222222111100 011112
Q ss_pred cHHHHHHHHhcCCCEEEECCC
Q 009759 193 SPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~ 213 (526)
-..+.+.+++.++|++++.++
T Consensus 154 ~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 154 EAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred HHHHHHHHHHhCcCEEEEeCh
Confidence 345778889999999999875
No 225
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=79.62 E-value=11 Score=38.07 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
...++|||+++.. | .....++.++.++|++|.++.............. .+..+. .-.
T Consensus 8 ~~~~~~~ilIiG~--------g--~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~-----~~~~~~--------~d~ 64 (395)
T PRK09288 8 LSPSATRVMLLGS--------G--ELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHR-----SHVIDM--------LDG 64 (395)
T ss_pred CCCCCCEEEEECC--------C--HHHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhh-----eEECCC--------CCH
Confidence 3456789988732 2 2345677889999999999887653221111000 001110 112
Q ss_pred HHHHHHHHhcCCCEEEECCC
Q 009759 194 PRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~ 213 (526)
..+.+++++.++|.|+....
T Consensus 65 ~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 65 DALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred HHHHHHHHHhCCCEEEEeeC
Confidence 46777888889999887643
No 226
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=79.31 E-value=11 Score=34.91 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=60.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce---eccccccCCCc--cccccchhccc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK---LIGSRSFPCPW--YQKVPLSLALS 193 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~ 193 (526)
||||+--+. |=.+.-+..|+++|+ .+++|+|+++..+....-..+. -++...+.... ....+.. ...
T Consensus 1 mrILlTNDD------Gi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~GTPaD-CV~ 72 (252)
T COG0496 1 MRILLTNDD------GIHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVNGTPAD-CVI 72 (252)
T ss_pred CeEEEecCC------ccCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEeccceEEecCChHH-HHH
Confidence 788665332 334456788999999 8899999998764322111111 11111111100 0011111 112
Q ss_pred HHHHHHHHhcCCCEEEECC----------CchHHHHHHHHHHhcCCCEEEEEec
Q 009759 194 PRIISEVARFKPDIIHASS----------PGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~----------~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
..+..++++.+||+|+..- ......++.+-+...|+|-|-.-+.
T Consensus 73 lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 73 LGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 3555666667799998831 1123455666778889998876555
No 227
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=79.24 E-value=9.4 Score=31.14 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHcCcEEEecCC--CCCC--cHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 386 SQAYASGDVFVMPSE--SETL--GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 386 ~~~~~~aDv~v~ps~--~e~~--~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
..++..||++|.--- +.-+ ..-.--|.|.|+|.|+-.-..+..-+ ++-...-..-..++++..+.|..++
T Consensus 70 ~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpL---KEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 70 RKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPL---KEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH---HHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 467899999986421 1111 11233578999999987665554444 2222222222337777777776654
No 228
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=78.88 E-value=6.8 Score=37.24 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCC-CCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEE
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEG-VPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHA 210 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~ 210 (526)
||.+..--..+.+|.+.||+|.|+-.-.. ......... . ......+.-...+.+.+.++++|.|+-
T Consensus 7 GGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~--------~---~f~~gDi~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 7 GGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ--------F---KFYEGDLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred cCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhcc--------C---ceEEeccccHHHHHHHHHhcCCCEEEE
Confidence 67777777888999999999999964322 111111100 0 111122334457888889999997643
No 229
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=78.62 E-value=63 Score=31.73 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=65.3
Q ss_pred HhCCCcEEEEEeCCccHHHHHHHhcCC---CeEEecc----cChhhHH----HHHHcCcEEEecC--CCCCCcHHHHHHH
Q 009759 346 DRLPEARIAFIGDGPYREELEKMFTGM---PAVFTGM----LLGEELS----QAYASGDVFVMPS--ESETLGLVVLEAM 412 (526)
Q Consensus 346 ~~l~~~~l~ivG~g~~~~~l~~l~~~~---~V~~~g~----v~~~~l~----~~~~~aDv~v~ps--~~e~~~~~ilEAm 412 (526)
..+.+-++.++|.|+..+...+...+. ++.+... ++.+++. .+...+||+|..+ .....|....|.+
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~ 249 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESL 249 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHH
Confidence 334566777777776554443333322 2333322 2334433 6678999999863 3344555555554
Q ss_pred HcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 413 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 413 a~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
.--.+-+.-|.+-.+++- +.....+..++ |.++|.+.+.+ +...|++....+...+ +..+.++. +.|
T Consensus 250 ~~~~~r~~iDLAvPRdId-~v~~~~~v~Ly---~iDdL~~i~~~---n~~~R~~~~~~ae~iI-----~~~~~~~~-~~~ 316 (338)
T PRK00676 250 ADIPDRIVFDFNVPRTFP-WSETPFPHRYL---DMDFISEWVQK---HLQCRKEVNNKHKLSL-----REAAYKQW-ESY 316 (338)
T ss_pred hhccCcEEEEecCCCCCc-cccccCCcEEE---EhHHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHHHHHH-HHH
Confidence 422213444554433332 10222333344 55666555543 2233444444444433 33444454 455
Q ss_pred HHHH
Q 009759 493 NAAI 496 (526)
Q Consensus 493 ~~~l 496 (526)
++=.
T Consensus 317 ~~~~ 320 (338)
T PRK00676 317 EKKL 320 (338)
T ss_pred HHHH
Confidence 5443
No 230
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=78.33 E-value=18 Score=34.85 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=29.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
++||+++..... +...-.-.....++++|.+.||+|.++.
T Consensus 3 ~~~i~vl~gg~s-~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 3 NEKIVVLYGGDS-PEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CcEEEEEeCCCC-CchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 679999976422 3333444667899999999999998874
No 231
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=77.55 E-value=54 Score=29.93 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=63.7
Q ss_pred EEEEecccccccHHHHHHHHHhCCCcEEEEEeCCc--cHHHHHHHhcCCCeEEecccChhhHHHHH--HcCcEEEecCC-
Q 009759 326 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGP--YREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVFVMPSE- 400 (526)
Q Consensus 326 i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~--~~~~l~~l~~~~~V~~~g~v~~~~l~~~~--~~aDv~v~ps~- 400 (526)
|+=.|++....-+|++++-.+.-.|+...++|+|. ..++.... ....+ -.-|++|+-|-
T Consensus 7 iiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~----------------~~~~~~~~~pDf~i~isPN 70 (277)
T PRK00994 7 IIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEV----------------VKKMLEEWKPDFVIVISPN 70 (277)
T ss_pred EEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHH----------------HHHHHHhhCCCEEEEECCC
Confidence 55678888888888888877777899999999885 12222111 11111 13466665544
Q ss_pred -CCCCcHHHHHHHH-cCCcEEEe-CCCCCC--ceecccCCCceeEeeCCCC
Q 009759 401 -SETLGLVVLEAMS-SGIPVVGV-RAGGIP--DIIPEDQDGKIGYLFNPGD 446 (526)
Q Consensus 401 -~e~~~~~ilEAma-~G~PvI~~-~~gg~~--e~v~~~~~~~~g~~~~~~d 446 (526)
..+.|.+.-|.+. .|+|+|+- |.++.. +-+ ++..-|+++-..|
T Consensus 71 ~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l---~~~g~GYIivk~D 118 (277)
T PRK00994 71 PAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM---EEQGLGYIIVKAD 118 (277)
T ss_pred CCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH---HhcCCcEEEEecC
Confidence 4566777888775 57898754 444443 344 5666777765443
No 232
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=77.15 E-value=53 Score=29.25 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=65.2
Q ss_pred EEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCc--cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecC--C
Q 009759 325 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGP--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS--E 400 (526)
Q Consensus 325 ~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~--~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps--~ 400 (526)
.|+-+|+++...-++++++-...-+++.+.++|+|. ..+.++... .++.+- -..|++|+-| -
T Consensus 6 g~ik~GniGts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav-------------~~~~e~-~~pDfvi~isPNp 71 (277)
T COG1927 6 GFIKCGNIGTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAV-------------TEMLEE-FNPDFVIYISPNP 71 (277)
T ss_pred EEEEecccchHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHH-------------HHHHHh-cCCCEEEEeCCCC
Confidence 356678888888889988888777899999999873 122222211 122111 1346666544 4
Q ss_pred CCCCcHHHHHHHH-cCCcEEEe-CCCCC--CceecccCCCceeEeeC
Q 009759 401 SETLGLVVLEAMS-SGIPVVGV-RAGGI--PDIIPEDQDGKIGYLFN 443 (526)
Q Consensus 401 ~e~~~~~ilEAma-~G~PvI~~-~~gg~--~e~v~~~~~~~~g~~~~ 443 (526)
..+.|.+.-|.++ .|.|+|.- +.+|. .+-+ ++..-|+++-
T Consensus 72 aaPGP~kARE~l~~s~~PaiiigDaPg~~vkdel---eeqGlGYIiv 115 (277)
T COG1927 72 AAPGPKKAREILSDSDVPAIIIGDAPGLKVKDEL---EEQGLGYIIV 115 (277)
T ss_pred CCCCchHHHHHHhhcCCCEEEecCCccchhHHHH---HhcCCeEEEe
Confidence 5667888889887 68997654 55553 3444 5566777765
No 233
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=76.52 E-value=11 Score=39.11 Aligned_cols=93 Identities=12% Similarity=0.184 Sum_probs=60.2
Q ss_pred hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcC-CcEEEeCCC--CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 383 EELSQAYASGDVFVMPSESETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G-~PvI~~~~g--g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
....+.|+.+.+++.|.-.+...-.++||+..| +|||.++.- ...+.+ +-..-++.++..+.... |.+++.
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~---d~~~fSV~v~~~~v~~~---~~~iL~ 408 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVL---DWTEFSVFVPEKDVPEL---IKNILL 408 (464)
T ss_pred chHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCc---cceEEEEEEEHHHhhhH---HHHHHH
Confidence 478899999999999999888888999999999 688888752 334444 33345555554444444 333333
Q ss_pred --CHHHHHHHHHHHHHHH-HhCCHH
Q 009759 460 --NQELRETMGQAARQEM-EKYDWR 481 (526)
Q Consensus 460 --d~~~~~~~~~~a~~~~-~~fs~~ 481 (526)
-.+...+|.++....+ +.|-+.
T Consensus 409 ~i~~~~~~~m~~~v~~~v~r~~~~~ 433 (464)
T KOG1021|consen 409 SIPEEEVLRMRENVIRLVPRHFLKK 433 (464)
T ss_pred hcCHHHHHHHHHHHHHHHHhhEEeC
Confidence 2344466666655433 444443
No 234
>PLN02778 3,5-epimerase/4-reductase
Probab=76.38 E-value=11 Score=36.49 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=25.8
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMV 156 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~v 156 (526)
...+|||++. ||.+..-..+++.|.++||+|++
T Consensus 6 ~~~~~kiLVt---------G~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 6 GSATLKFLIY---------GKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCCeEEEE---------CCCCHHHHHHHHHHHhCCCEEEE
Confidence 4455898766 56667778899999999999975
No 235
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=76.02 E-value=13 Score=38.04 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=49.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+++. |+ .....+++++.+.|+.+.++............ . ..... ........+.+
T Consensus 1 ~kiliiG---------~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~--------~~~~d~~~l~~ 58 (423)
T TIGR00877 1 MKVLVIG---------NG-GREHALAWKLAQSPLVKYVYVAPGNAGTARLA-K---NKNVA--------ISITDIEALVE 58 (423)
T ss_pred CEEEEEC---------CC-hHHHHHHHHHHhCCCccEEEEECCCHHHhhhc-c---ccccc--------CCCCCHHHHHH
Confidence 7898883 22 23778889998889887777553321110000 0 00000 01123457888
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
++++.++|+|+............-.....++|++
T Consensus 59 ~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 59 FAKKKKIDLAVIGPEAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred HHHHhCCCEEEECCchHHHHHHHHHHHHCCCeEE
Confidence 8889999999876432211111222344566654
No 236
>PLN00016 RNA-binding protein; Provisional
Probab=75.52 E-value=16 Score=36.59 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
..++|||+++.. ..||.+..-..+++.|.+.||+|++++...
T Consensus 49 ~~~~~~VLVt~~-----~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 49 AVEKKKVLIVNT-----NSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccccceEEEEec-----cCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 334478877632 225556677889999999999999998654
No 237
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=75.43 E-value=70 Score=29.75 Aligned_cols=99 Identities=11% Similarity=-0.029 Sum_probs=60.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.|+|+++ ||. .-...+++.|...+..+++.+.............. .....+.....+.
T Consensus 2 ~~~ilvl---------GGT-~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~------------~~~~G~l~~e~l~ 59 (257)
T COG2099 2 MMRILLL---------GGT-SDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP------------VRVGGFLGAEGLA 59 (257)
T ss_pred CceEEEE---------ecc-HHHHHHHHHhhccCccEEEEEcccccccchhccCC------------eeecCcCCHHHHH
Confidence 3788777 343 34688999999999776666644322111110000 1111223446899
Q ss_pred HHHHhcCCCEEEECCCchHH---HHHHHHHHhcCCCEEEEEecC
Q 009759 198 SEVARFKPDIIHASSPGIMV---FGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~---~~~~~~~~~~~~p~v~~~h~~ 238 (526)
+++++.+.|+++=-+.++.. -.++.+++..++|++-...-.
T Consensus 60 ~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~ 103 (257)
T COG2099 60 AFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPP 103 (257)
T ss_pred HHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCc
Confidence 99999999998865533322 235678899999998765543
No 238
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=75.04 E-value=21 Score=38.54 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
...++||++|+.+ | + --...+-..+..|.++||+|+|++...+
T Consensus 366 ~~~~~rvLv~spH-P--D--Devi~~GGTlarl~~~G~~V~vv~~TsG 408 (652)
T PRK02122 366 LPYPKRVIIFSPH-P--D--DDVISMGGTFRRLVEQGHDVHVAYQTSG 408 (652)
T ss_pred ccCCceEEEEEeC-C--C--chHhhhHHHHHHHHHCCCcEEEEEecCC
Confidence 3445889888764 3 2 2233344566888999999999875443
No 239
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=75.04 E-value=78 Score=32.19 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=56.6
Q ss_pred CcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCC-eEEecccChhhHHHHHHcCcEEEecCCC
Q 009759 323 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSES 401 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~-V~~~g~v~~~~l~~~~~~aDv~v~ps~~ 401 (526)
...++.+|.= .--..+...+....--++.|+.... +..+.+....+ ... ++.+++.+.+..+|++|..+..
T Consensus 181 ~kkvlviGaG---~~a~~va~~L~~~g~~~I~V~nRt~--~ra~~La~~~~~~~~---~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 181 SKNVLIIGAG---QTGELLFRHVTALAPKQIMLANRTI--EKAQKITSAFRNASA---HYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred CCEEEEEcCc---HHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHhcCCeE---ecHHHHHHHhccCCEEEECcCC
Confidence 3457777752 2224555555554334677777543 33445554432 322 3447889999999999987643
Q ss_pred CCCcHHHHHHHHcCCcEEEeCCCCCCcee
Q 009759 402 ETLGLVVLEAMSSGIPVVGVRAGGIPDII 430 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~~gg~~e~v 430 (526)
..+ ..- ..+.-+.|.+.-|.+-.+++-
T Consensus 253 ~~~-vi~-~~~~~~~~~~~iDLavPRdid 279 (414)
T PRK13940 253 LEY-IVT-CKYVGDKPRVFIDISIPQALD 279 (414)
T ss_pred CCe-eEC-HHHhCCCCeEEEEeCCCCCCC
Confidence 222 111 233457898888887555553
No 240
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=74.84 E-value=7.7 Score=37.17 Aligned_cols=87 Identities=11% Similarity=0.222 Sum_probs=50.3
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..++|||+++.+. .+.-+..|+++.... +++|.++..+....... .+..+++.+..+... ...-..
T Consensus 86 ~~~~~ri~vl~Sg--------~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~l--A~~~gIp~~~~~~~~--~~~~~~ 153 (286)
T PRK06027 86 SAERKRVVILVSK--------EDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSL--VERFGIPFHHVPVTK--ETKAEA 153 (286)
T ss_pred cccCcEEEEEEcC--------CCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHH--HHHhCCCEEEeccCc--cccchh
Confidence 4567899999762 245567778777663 67888887766432222 111222222211110 001112
Q ss_pred cHHHHHHHHhcCCCEEEECCC
Q 009759 193 SPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~ 213 (526)
-..+.+.++++++|+|++..+
T Consensus 154 ~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK06027 154 EARLLELIDEYQPDLVVLARY 174 (286)
T ss_pred HHHHHHHHHHhCCCEEEEecc
Confidence 346788899999999999875
No 241
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=73.85 E-value=36 Score=27.38 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECC
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASS 212 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~ 212 (526)
.-+..++..|++.||+|.++...... ..+.+.+++.+||+|.++.
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~~~~------------------------------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDANVPP------------------------------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESSB-H------------------------------HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCH------------------------------HHHHHHHhcCCCcEEEEEc
Confidence 45788999999999999988443210 4677788888999988865
No 242
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=73.70 E-value=26 Score=40.55 Aligned_cols=103 Identities=9% Similarity=0.041 Sum_probs=58.5
Q ss_pred CCcEEEEEeccCCCCccCchH--HHHHHHHHHHHHCCCeEEEEEeCCCCCcccc-CceeccccccCCCccccccchhccc
Q 009759 117 RPRRIALFVEPSPFSYVSGYK--NRFQNFIKYLREMGDEVMVVTTHEGVPQEFY-GAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.++||+++... |....-|.+ ..+...+++|++.||+|.++..++....... .... .+ ......
T Consensus 554 ~~kkvLIlG~G-~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~----~y---------~ep~~~ 619 (1068)
T PRK12815 554 EKKKVLILGSG-PIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADR----LY---------FEPLTL 619 (1068)
T ss_pred CCceEEEeccc-ccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCce----EE---------EccCCH
Confidence 46789888553 322222332 3578899999999999999987764221110 0000 00 011134
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
..+.+++++++||.|+..................|++++.
T Consensus 620 e~vl~I~~~e~~dgVI~~~g~~~~~~la~~le~~Gi~ilG 659 (1068)
T PRK12815 620 EDVLNVAEAENIKGVIVQFGGQTAINLAKGLEEAGLTILG 659 (1068)
T ss_pred HHHHHHHhhcCCCEEEEecCcHHHHHHHHHHHHCCCeEEC
Confidence 6788899999999999753222222222223445777653
No 243
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=73.21 E-value=32 Score=35.83 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=48.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
||||++.. +.+-..|+..|++. |++|.++..+. .+.............+. ....-...+
T Consensus 1 mkVLviG~----------Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~--------~~~~d~~~l 61 (486)
T PRK05784 1 MKVLLVGD----------GAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFI--------GNINSPEEV 61 (486)
T ss_pred CEEEEECC----------chhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEe--------cCCCCHHHH
Confidence 79988743 24556788888877 89888884422 11100000000000001 111123467
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
.+++++.++|.|+............-.....|+|++
T Consensus 62 ~~~a~~~~id~Vi~g~E~~l~~glad~l~~~Gi~v~ 97 (486)
T PRK05784 62 KKVAKEVNPDLVVIGPEEPLFAGVADVLREEGFPVF 97 (486)
T ss_pred HHHHHHhCCCEEEECCchHHHHHHHHHHHhCCCCEE
Confidence 888889999999985433221111122344677654
No 244
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=72.78 E-value=18 Score=31.52 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=59.7
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc-----cCc-eeccccccCCCccccccchhccc
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF-----YGA-KLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
+|+++.++ ..|......+++...-++.|-+|.++..+....... .+. +++.+ ..+.+.. .....+.
T Consensus 1 ~ilV~~E~----~~g~l~~~s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~---~~~~~~~-~~~~~~a 72 (168)
T cd01715 1 SVLVLAEH----RNGELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKAYGADKVLVA---EDPALAH-YLAEPYA 72 (168)
T ss_pred CEEEEEEe----cCCChHHHHHHHHHHHHHhCCCEEEEEECCChHHHHHHHHhcCCCEEEEe---cChhhcc-cChHHHH
Confidence 36666663 224455555565555555555677777654322111 111 11111 1110000 1123345
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
..+.+.+++.+||+|++.......-.+..++.+++.+++.++-+.
T Consensus 73 ~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 73 PALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 567788888899999997654333334556778899998877764
No 245
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=72.55 E-value=15 Score=33.85 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=25.5
Q ss_pred CCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 205 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 205 pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
||++++.++..-.. +..-++..|+|+|-.+...
T Consensus 157 Pd~l~ViDp~~e~i-Av~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKI-AVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHH-HHHHHHHcCCCEEEEecCC
Confidence 99999999865443 5667889999998766653
No 246
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=72.37 E-value=17 Score=37.13 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=55.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
..|++++.+ ......+++.|.+.|.+|..+.............+.. .. ............-...+.
T Consensus 299 gk~v~i~~~----------~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~--~~--~~~~~~~~v~~~d~~el~ 364 (428)
T cd01965 299 GKRVAIAGD----------PDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELL--AS--LEGIPAEVVFVGDLWDLE 364 (428)
T ss_pred CCEEEEEcC----------hHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHh--hh--hcCCCceEEECCCHHHHH
Confidence 457876643 2578899999999999998776644322211110000 00 000000001112335777
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.+||+++.+... ..++++.++|++.
T Consensus 365 ~~i~~~~pdliig~~~~------~~~a~~~~ip~i~ 394 (428)
T cd01965 365 SLAKEEPVDLLIGNSHG------RYLARDLGIPLVR 394 (428)
T ss_pred HHhhccCCCEEEECchh------HHHHHhcCCCEEE
Confidence 88899999999998753 2345668999874
No 247
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=72.32 E-value=25 Score=40.63 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCcEEEEEeccCCCCccCchH--HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 117 RPRRIALFVEPSPFSYVSGYK--NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
.+.||+++... |....-|.+ .....++++|+++||+|.++..++....... ... ....+......
T Consensus 553 ~~~kvlvlG~G-~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~--~~~----------D~ly~ep~~~e 619 (1050)
T TIGR01369 553 DKKKVLVLGSG-PNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDY--DTS----------DRLYFEPLTFE 619 (1050)
T ss_pred CCceEEEecCc-ccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccc--ccc----------ceEEEecCCHH
Confidence 45689888542 211222332 3468899999999999999987654311100 000 00001111246
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.++++++++|.|+..................|+|++.
T Consensus 620 ~vl~i~~~e~idgVI~~~gg~~~~~la~~le~~Gi~i~G 658 (1050)
T TIGR01369 620 DVMNIIELEKPEGVIVQFGGQTPLNLAKALEEAGVPILG 658 (1050)
T ss_pred HHHHHHhhcCCCEEEEccCcHhHHHHHHHHHHCCCcEEC
Confidence 778889999999998764332222212222345777653
No 248
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=71.66 E-value=19 Score=34.33 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.++|||+++.+ |.+.-+..++++...- ..+|.++..+....... .+..+++.+..+... .....+-
T Consensus 82 ~~~~ki~vl~S--------g~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~--A~~~gIp~~~~~~~~--~~~~~~e 149 (280)
T TIGR00655 82 DKLKRVAILVS--------KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSL--VERFGIPFHYIPATK--DNRVEHE 149 (280)
T ss_pred CCCcEEEEEEc--------CCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHH--HHHhCCCEEEcCCCC--cchhhhH
Confidence 45689999975 3345677888887654 35777776665432221 111222222222110 0111233
Q ss_pred HHHHHHHHhcCCCEEEECCC
Q 009759 194 PRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~ 213 (526)
..+.+.++++++|+|++..+
T Consensus 150 ~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred HHHHHHHHHhCCCEEEEeCc
Confidence 46788899999999999875
No 249
>PLN02735 carbamoyl-phosphate synthase
Probab=71.64 E-value=26 Score=40.51 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=46.9
Q ss_pred CCCCCcEEEEEeccCCCCccC---chHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchh
Q 009759 114 NNSRPRRIALFVEPSPFSYVS---GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSL 190 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~g---G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (526)
.+...+|||++... | ...| -......+++++|++.|++|.++..+......-. .. .-..+-.+.
T Consensus 19 ~~~~~kkVLiiGsG-~-~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~--~~-aD~~yi~p~-------- 85 (1102)
T PLN02735 19 KRTDLKKIMILGAG-P-IVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDP--ET-ADRTYIAPM-------- 85 (1102)
T ss_pred cccCCCEEEEECCC-c-cccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCCh--hh-CcEEEeCCC--------
Confidence 34445789888542 1 1111 1123357899999999999999986653110000 00 000011111
Q ss_pred cccHHHHHHHHhcCCCEEEEC
Q 009759 191 ALSPRIISEVARFKPDIIHAS 211 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~~ 211 (526)
....+.+++++++||.|+..
T Consensus 86 -~~e~v~~ii~~e~~D~Iip~ 105 (1102)
T PLN02735 86 -TPELVEQVIAKERPDALLPT 105 (1102)
T ss_pred -CHHHHHHHHHHhCCCEEEEC
Confidence 12356777889999999984
No 250
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=71.54 E-value=9.3 Score=36.73 Aligned_cols=83 Identities=29% Similarity=0.416 Sum_probs=46.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceecc--cc----ccCCCccccccchhc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIG--SR----SFPCPWYQKVPLSLA 191 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~ 191 (526)
.|||+|+... .......++|.+.||+|.-+.+..+.+... +..... +. ...++.+... .+.
T Consensus 1 ~mkivF~GTp----------~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR-~~~l~~spVk~~A~~~~ipv~qP~--~l~ 67 (307)
T COG0223 1 MMRIVFFGTP----------EFAVPSLEALIEAGHEIVAVVTQPDKPAGR-GKKLTPSPVKRLALELGIPVFQPE--KLN 67 (307)
T ss_pred CcEEEEEcCc----------hhhHHHHHHHHhCCCceEEEEeCCCCccCC-CCcCCCChHHHHHHHcCCceeccc--cCC
Confidence 4899888542 456667788888999999888765433221 101100 00 0011111110 111
Q ss_pred ccHHHHHHHHhcCCCEEEECCCc
Q 009759 192 LSPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
. ..+.+.+++.+||++++..+.
T Consensus 68 ~-~e~~~~l~~l~~D~ivvvayG 89 (307)
T COG0223 68 D-PEFLEELAALDPDLIVVVAYG 89 (307)
T ss_pred c-HHHHHHHhccCCCEEEEEehh
Confidence 1 157788888899999987754
No 251
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.30 E-value=9.9 Score=36.03 Aligned_cols=206 Identities=14% Similarity=0.132 Sum_probs=107.5
Q ss_pred HHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEE-EEEecc--ccccc
Q 009759 261 FLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI-VHVGRL--GVEKS 337 (526)
Q Consensus 261 ~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~vG~l--~~~Kg 337 (526)
..-++|-.++.-.....+.+...+. +...+.|.. .+...|...+.... .....+| +.-|.- +.+.|
T Consensus 174 m~~rrc~~vf~rD~~Taq~L~~rgv----na~~vGnpm-mD~L~p~~~~~q~l------~~g~~viaLLPGsR~pea~~n 242 (412)
T COG4370 174 MLRRRCWAVFPRDALTAQHLANRGV----NAAYVGNPM-MDGLPPPERDPQLL------LTGVPVIALLPGSRVPEAQTN 242 (412)
T ss_pred HhcccceeeeccccccHHHHHhcCC----chhhccChh-hccCCCccCCchhh------ccCCceEEecCCCCChHHHhh
Confidence 3446677788777778888877764 334444443 23333322222111 2233333 445543 44577
Q ss_pred HHHHHHHHHhCCC-cE-EEEEe---CCccHHHHHHHh------------cCCCeEEecccChhhHHHHHHcCcEEEecCC
Q 009759 338 LDFLKRVMDRLPE-AR-IAFIG---DGPYREELEKMF------------TGMPAVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 338 ~~~li~a~~~l~~-~~-l~ivG---~g~~~~~l~~l~------------~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
+..++.++-.+++ .. +++.+ ++-....+..+. .+.|..+ +.+.+...+++..+|+.+
T Consensus 243 l~~il~slcal~~~~a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l--~lsqqsfadiLH~adaal---- 316 (412)
T COG4370 243 LAVILGSLCALPAMFALVVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSL--WLSQQSFADILHAADAAL---- 316 (412)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceEE--EEeHHHHHHHHHHHHHHH----
Confidence 7777775544432 11 12222 111111122221 2223222 334567888888888865
Q ss_pred CCCCcHHHHHHHHcCCcEEEeCCCCCCce---eccc-C-CCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 009759 401 SETLGLVVLEAMSSGIPVVGVRAGGIPDI---IPED-Q-DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 475 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~~gg~~e~---v~~~-~-~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~ 475 (526)
..-|...-.+...|+|||.....|..-. .... . -|..-.++. .+++.-+.+..+++.|++....++.++++++
T Consensus 317 -gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~ll~dp~r~~air~nGqrRi 394 (412)
T COG4370 317 -GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQELLGDPQRLTAIRHNGQRRI 394 (412)
T ss_pred -HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHHHhcChHHHHHHHhcchhhc
Confidence 3346677788999999999865443211 0000 0 022222333 2444444444459999999999999999888
Q ss_pred -HhCCHHHHHH
Q 009759 476 -EKYDWRAATR 485 (526)
Q Consensus 476 -~~fs~~~~~~ 485 (526)
+-=-..++++
T Consensus 395 GqaGaa~rIAe 405 (412)
T COG4370 395 GQAGAARRIAE 405 (412)
T ss_pred cCcchHHHHHH
Confidence 4333333333
No 252
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=71.26 E-value=84 Score=28.82 Aligned_cols=122 Identities=8% Similarity=-0.043 Sum_probs=68.0
Q ss_pred CcEEEEEeCCccHHHHHHHhcCCCeEEecc-cChhhHHHHHHcCcEEEecCCCCCCcHHH-HHHHHcCCcEEEeCCCCCC
Q 009759 350 EARIAFIGDGPYREELEKMFTGMPAVFTGM-LLGEELSQAYASGDVFVMPSESETLGLVV-LEAMSSGIPVVGVRAGGIP 427 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~-v~~~~l~~~~~~aDv~v~ps~~e~~~~~i-lEAma~G~PvI~~~~gg~~ 427 (526)
+.+++++... ..++++.+....++.+... ... ..+..+++++..+..+...-.+ -+|-+.|.+|.+.+.+...
T Consensus 48 gA~VtVVap~-i~~el~~l~~~~~i~~~~r~~~~----~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~ 122 (223)
T PRK05562 48 GCYVYILSKK-FSKEFLDLKKYGNLKLIKGNYDK----EFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKG 122 (223)
T ss_pred CCEEEEEcCC-CCHHHHHHHhCCCEEEEeCCCCh----HHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccC
Confidence 6788888753 3456666766656766542 222 3356788887776544444444 4455779999888777666
Q ss_pred ceeccc--CCCceeEeeC-CC-C---HHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 009759 428 DIIPED--QDGKIGYLFN-PG-D---LDDCLSKLEPLLYNQELRETMGQAARQEME 476 (526)
Q Consensus 428 e~v~~~--~~~~~g~~~~-~~-d---~~~la~ai~~ll~d~~~~~~~~~~a~~~~~ 476 (526)
+++.+- +.+.--+-+. .+ + ...+.+.|+.++.+.+.+-++....|+.++
T Consensus 123 dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~~vk 178 (223)
T PRK05562 123 LCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRNKAK 178 (223)
T ss_pred eEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665321 2332222222 12 2 345666666666444444444445555553
No 253
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=71.15 E-value=35 Score=34.95 Aligned_cols=112 Identities=28% Similarity=0.340 Sum_probs=70.7
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHcC--cEEEecCC-CCCCcHHHHHHHHc---CCcEE-EeCC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASG--DVFVMPSE-SETLGLVVLEAMSS---GIPVV-GVRA 423 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~a--Dv~v~ps~-~e~~~~~ilEAma~---G~PvI-~~~~ 423 (526)
++.++-+.. ....+.......+......-+.++....+... |+++.-.+ .+.-|+.+++.+.. ++||| .|..
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~ 85 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGH 85 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCC
Confidence 345555432 33334444444333333333336666666665 66665444 35567777777665 68886 4566
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHH
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 463 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~ 463 (526)
|.+...+...+.|-.-|+..|-+++.+...+.+.+.....
T Consensus 86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred CCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 7666555444678888899999999999999999886544
No 254
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=70.99 E-value=21 Score=34.78 Aligned_cols=33 Identities=33% Similarity=0.307 Sum_probs=24.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+|+... .......++|.+.||+|..+.+..
T Consensus 1 mkIvf~Gs~----------~~a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTP----------TFSLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCC----------HHHHHHHHHHHhCCCcEEEEEcCC
Confidence 799888542 456778888888999987666543
No 255
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=70.23 E-value=15 Score=32.44 Aligned_cols=100 Identities=22% Similarity=0.151 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc------ccCc-eeccccccCCCccccccchhcccHHHHHHHHhcCCCE
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE------FYGA-KLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDI 207 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDi 207 (526)
-....+...++.|.+.|-+|.++..+...... ..+. +++.+.. +.+. ......+...+.+.+++.+||+
T Consensus 19 ~~~~e~l~~A~~l~~~~~~v~~v~~G~~~~~~~~~~~~~~Gad~v~~~~~---~~~~-~~~~~~~a~~l~~~i~~~~p~~ 94 (181)
T cd01985 19 PLDLEAVEAALRLKEYGGEVTALVIGPPAAEVALREALAMGADKVLLVED---PALA-GYDPEATAKALAALIKKEKPDL 94 (181)
T ss_pred HhhHHHHHHHHHHhhcCCeEEEEEECChHHHHHHHHHHHhCCCEEEEEec---Cccc-CCChHHHHHHHHHHHHHhCCCE
Confidence 33445666677776544677777765432111 1111 1111111 1000 0112234456777888889999
Q ss_pred EEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 208 IHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 208 V~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
|++-......-.+..++.+++.+++.++-+.
T Consensus 95 Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~l 125 (181)
T cd01985 95 ILAGATSIGKQLAPRVAALLGVPQISDVTKL 125 (181)
T ss_pred EEECCcccccCHHHHHHHHhCCCcceeEEEE
Confidence 9997654433335556778899998877664
No 256
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=70.22 E-value=1.1e+02 Score=29.51 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=68.1
Q ss_pred cCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc---cCc--ee------ccccccCCCccccccchhcccHHHHHHHH
Q 009759 133 VSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF---YGA--KL------IGSRSFPCPWYQKVPLSLALSPRIISEVA 201 (526)
Q Consensus 133 ~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 201 (526)
..|-+..+-.|.+.|.++||.|-|+.-++..+..- -+. +. .++..-+.+........-...+....+++
T Consensus 61 GaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ld 140 (323)
T COG1703 61 GAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLD 140 (323)
T ss_pred CCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHH
Confidence 35777888999999999999999999766432210 000 00 01111111111111111223346677788
Q ss_pred hcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 202 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 202 ~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
...+|+|++.......- -.-+.....+-+++...+... ....+..-++..+|.++++-.
T Consensus 141 AaG~DvIIVETVGvGQs-ev~I~~~aDt~~~v~~pg~GD-------------~~Q~iK~GimEiaDi~vINKa 199 (323)
T COG1703 141 AAGYDVIIVETVGVGQS-EVDIANMADTFLVVMIPGAGD-------------DLQGIKAGIMEIADIIVINKA 199 (323)
T ss_pred hcCCCEEEEEecCCCcc-hhHHhhhcceEEEEecCCCCc-------------HHHHHHhhhhhhhheeeEecc
Confidence 88999999976432211 122234444445554444321 112334556777888776543
No 257
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=70.10 E-value=96 Score=29.01 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=59.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.|+|+++. |. .-...+++.|.+.|+.|.+-+.............+ . ...+.....+.
T Consensus 2 ~~~Ilvlg---------GT-~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v-----~--------~G~l~~~~~l~ 58 (248)
T PRK08057 2 MPRILLLG---------GT-SEARALARALAAAGVDIVLSLAGRTGGPADLPGPV-----R--------VGGFGGAEGLA 58 (248)
T ss_pred CceEEEEe---------ch-HHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceE-----E--------ECCCCCHHHHH
Confidence 36888883 22 34678999999999988887655422211111110 0 01111346888
Q ss_pred HHHHhcCCCEEEECCCchHH---HHHHHHHHhcCCCEEEEEecC
Q 009759 198 SEVARFKPDIIHASSPGIMV---FGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~---~~~~~~~~~~~~p~v~~~h~~ 238 (526)
.+++++++++|+=-+.++.. -.+.-+++..++|++-.....
T Consensus 59 ~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~ 102 (248)
T PRK08057 59 AYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPS 102 (248)
T ss_pred HHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 99999999988764432222 224557788999999766643
No 258
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=69.79 E-value=8.8 Score=31.75 Aligned_cols=37 Identities=30% Similarity=0.287 Sum_probs=27.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++.... ++.......+++.|.+.|++|.++....
T Consensus 1 k~i~l~vtG------s~~~~~~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTG------SIAAYKAPDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-S------SGGGGGHHHHHHHHHTTTSEEEEEESHH
T ss_pred CEEEEEEEC------HHHHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 688888653 2333448999999999999999998653
No 259
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=69.21 E-value=64 Score=26.60 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=53.9
Q ss_pred CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecc--cCCCceeEeeCCCCHHH
Q 009759 372 MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE--DQDGKIGYLFNPGDLDD 449 (526)
Q Consensus 372 ~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~--~~~~~~g~~~~~~d~~~ 449 (526)
..|.+....+.+++.+.+..+|+++..... .+.-.+++++ -++-+|++...|...+--+ .+.|-.-.-.+....++
T Consensus 19 ~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~a 96 (133)
T PF00389_consen 19 FEVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEA 96 (133)
T ss_dssp SEEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHH
T ss_pred ceEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcc
Confidence 478888888889999999999999975432 4778888888 8888998887777543110 02333322334445666
Q ss_pred HHHHH
Q 009759 450 CLSKL 454 (526)
Q Consensus 450 la~ai 454 (526)
.|+..
T Consensus 97 VAE~a 101 (133)
T PF00389_consen 97 VAEHA 101 (133)
T ss_dssp HHHHH
T ss_pred hhccc
Confidence 66655
No 260
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=69.19 E-value=13 Score=33.33 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCcEEEEEeccCCCCccCchHHH--HHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNR--FQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~--~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+.+||++-.. ||.+.+ ...+++.|.+.|++|.++.+..
T Consensus 4 ~~k~IllgVT-------Gsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLT-------GSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEc-------CHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4568876654 454443 4899999999999999998654
No 261
>PRK06988 putative formyltransferase; Provisional
Probab=69.15 E-value=28 Score=33.83 Aligned_cols=83 Identities=23% Similarity=0.198 Sum_probs=44.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc-Cceec-cccccCCCccccccchhcccHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY-GAKLI-GSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.|||+++... .......+.|.+.|++|..+.+......... ...+. ......++.+.. ... ....
T Consensus 2 ~mkIvf~Gs~----------~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~--~~~-~~~~ 68 (312)
T PRK06988 2 KPRAVVFAYH----------NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITP--ADP-NDPE 68 (312)
T ss_pred CcEEEEEeCc----------HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEcc--ccC-CCHH
Confidence 3899888642 4567778888888999887776543221100 00000 000011111110 000 1235
Q ss_pred HHHHHHhcCCCEEEECCC
Q 009759 196 IISEVARFKPDIIHASSP 213 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~ 213 (526)
+.+.+++.+||++++..+
T Consensus 69 ~~~~l~~~~~Dliv~~~~ 86 (312)
T PRK06988 69 LRAAVAAAAPDFIFSFYY 86 (312)
T ss_pred HHHHHHhcCCCEEEEehh
Confidence 677888999999988764
No 262
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=69.13 E-value=39 Score=31.19 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=29.0
Q ss_pred cEEEEEeccCCCCccCchH--HHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYK--NRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|||..|.+ ..||.+ ....+|+.+|+++|+.|.++-.+..
T Consensus 1 M~iI~v~n-----~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ 41 (231)
T PRK13849 1 MKLLTFCS-----FKGGAGKTTALMGLCAALASDGKRVALFEADEN 41 (231)
T ss_pred CeEEEEEC-----CCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 66666653 346655 4478999999999999999977654
No 263
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=69.07 E-value=14 Score=31.46 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=28.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++|... | ...|-....+..+++.+.+.|+++.++...+
T Consensus 1 Mkilii~gS-~-r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGS-P-RKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESS-S-STTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECc-C-CCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 899999764 2 2334455557778888888899999997544
No 264
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=69.05 E-value=28 Score=35.19 Aligned_cols=91 Identities=11% Similarity=-0.046 Sum_probs=60.2
Q ss_pred CCcHHHHHHHHcCCcEEEeCCCC---CCceecccCCCceeEeeCC-CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-Hh
Q 009759 403 TLGLVVLEAMSSGIPVVGVRAGG---IPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEM-EK 477 (526)
Q Consensus 403 ~~~~~ilEAma~G~PvI~~~~gg---~~e~v~~~~~~~~g~~~~~-~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~ 477 (526)
+++..+---|+||-.|+..+..- ..+.+ .....-+-+.. +|..+|.++|..+.++++..++++++|++++ +.
T Consensus 225 ~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L---~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~ 301 (395)
T PF05686_consen 225 AWSGRLKYLLACNSVVLKVKSPYYEFFYRAL---KPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREY 301 (395)
T ss_pred eeehhHHHHHcCCceEEEeCCcHHHHHHhhh---cccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHH
Confidence 44556666688888888754321 12223 23333333333 4789999999999999999999999999998 56
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 009759 478 YDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 478 fs~~~~~~~~~~~ly~~~l~ 497 (526)
.+.+.+..-+. .++.+-.+
T Consensus 302 L~~~~~~~Y~~-~LL~eYa~ 320 (395)
T PF05686_consen 302 LTMEDVYCYWR-RLLLEYAK 320 (395)
T ss_pred hhhhHHHHHHH-HHHHHHHH
Confidence 77777665554 44444433
No 265
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=68.90 E-value=11 Score=35.77 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=37.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
||||++ |+.+..-..|++.|. .+++|...+... ..+.-...+.+
T Consensus 1 M~iLi~---------G~~GqLG~~L~~~l~-~~~~v~a~~~~~--------------------------~Ditd~~~v~~ 44 (281)
T COG1091 1 MKILIT---------GANGQLGTELRRALP-GEFEVIATDRAE--------------------------LDITDPDAVLE 44 (281)
T ss_pred CcEEEE---------cCCChHHHHHHHHhC-CCceEEeccCcc--------------------------ccccChHHHHH
Confidence 677666 444466677777777 567877765433 01112246788
Q ss_pred HHHhcCCCEEEEC
Q 009759 199 EVARFKPDIIHAS 211 (526)
Q Consensus 199 ~l~~~~pDiV~~~ 211 (526)
.+++.+||+|+-.
T Consensus 45 ~i~~~~PDvVIn~ 57 (281)
T COG1091 45 VIRETRPDVVINA 57 (281)
T ss_pred HHHhhCCCEEEEC
Confidence 8999999998764
No 266
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=68.81 E-value=9.2 Score=38.28 Aligned_cols=39 Identities=13% Similarity=0.034 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.+.+.+|||++. ||.+..-..+++.|.++||+|+.+...
T Consensus 16 ~~~~~~~~IlVt---------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 16 YWPSEKLRICIT---------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCCCEEEEE---------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 456778999766 566677889999999999999998753
No 267
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=68.18 E-value=10 Score=35.55 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
..++||||+.-+. |=.+.-+..|+++|.+.| +|.|+++..+
T Consensus 2 ~~~~M~ILltNDD------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 2 QDKKPHILVCNDD------GIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCCCCEEEEECCC------CCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 4567999766432 222345788999999988 8999998654
No 268
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=68.13 E-value=17 Score=29.25 Aligned_cols=39 Identities=10% Similarity=-0.066 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++...++|+|++..+..........+-..|+++++
T Consensus 53 ~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 53 DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 466777777999999998876666555566667776654
No 269
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=68.01 E-value=13 Score=35.67 Aligned_cols=87 Identities=7% Similarity=0.096 Sum_probs=49.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..++|||+++.+. .+.-+..++++..+. ..+|.++..+.....+. .+..+++.+.++... ......
T Consensus 90 ~~~~~kiavl~Sg--------~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~--A~~~gIp~~~~~~~~--~~~~~~ 157 (289)
T PRK13010 90 DGQRPKVVIMVSK--------FDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPL--AVQHDIPFHHLPVTP--DTKAQQ 157 (289)
T ss_pred CCCCeEEEEEEeC--------CCccHHHHHHHHHCCCCCcEEEEEEECChhHHHH--HHHcCCCEEEeCCCc--ccccch
Confidence 4557899999752 235567788887765 35777776665432211 111222222211111 011112
Q ss_pred cHHHHHHHHhcCCCEEEECCC
Q 009759 193 SPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~ 213 (526)
-..+.+.++++++|+|++..+
T Consensus 158 ~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 158 EAQILDLIETSGAELVVLARY 178 (289)
T ss_pred HHHHHHHHHHhCCCEEEEehh
Confidence 346788899999999998775
No 270
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=67.63 E-value=26 Score=34.00 Aligned_cols=82 Identities=24% Similarity=0.275 Sum_probs=43.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc----ccCceec-cccccCCCccccccchhccc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE----FYGAKLI-GSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 193 (526)
|||+|+... ......++.|.+.||++..+.+....... .....+. ......++.+.. ... ..
T Consensus 1 mkIvf~G~~----------~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~--~~~-~~ 67 (309)
T PRK00005 1 MRIVFMGTP----------EFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQP--EKL-RD 67 (309)
T ss_pred CEEEEECCC----------HHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECc--CCC-CC
Confidence 899888542 46677888888889998866654322110 0000000 000001111110 000 12
Q ss_pred HHHHHHHHhcCCCEEEECCC
Q 009759 194 PRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~ 213 (526)
..+.+.+++.+||++++..+
T Consensus 68 ~~~~~~l~~~~~Dliv~~~~ 87 (309)
T PRK00005 68 PEFLAELAALNADVIVVVAY 87 (309)
T ss_pred HHHHHHHHhcCcCEEEEehh
Confidence 35567788899999999765
No 271
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=67.61 E-value=24 Score=35.27 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=59.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
|||+++.. +..-...+..|++.| ++|++..................+ ........-...+.
T Consensus 2 ~~ilviGa----------G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v--------~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGA----------GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKV--------EALQVDAADVDALV 63 (389)
T ss_pred CcEEEECC----------chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccc--------eeEEecccChHHHH
Confidence 67877732 345556788888888 999999876432221111000011 11111222345777
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
++|++. |+|+.--+.......+-++-..|+.++-+.-
T Consensus 64 ~li~~~--d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 64 ALIKDF--DLVINAAPPFVDLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred HHHhcC--CEEEEeCCchhhHHHHHHHHHhCCCEEEccc
Confidence 888854 9999888777766666677788998875443
No 272
>PRK05802 hypothetical protein; Provisional
Probab=67.33 E-value=18 Score=35.36 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=57.0
Q ss_pred cEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeCCCCCccccC--ceecc--ccccCCCccccccchhccc
Q 009759 119 RRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTHEGVPQEFYG--AKLIG--SRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~ 193 (526)
.++++|+ ||.+.. ++.+++.|.+.|.+|+++.......+.+.. ..... ...... ...-.......
T Consensus 173 ~~~llIa--------GGiGIaPl~~l~~~l~~~~~~v~li~g~r~~~~~~~~~el~~~~~~~~~~~~--~ddG~~~~~~~ 242 (320)
T PRK05802 173 GKSLVIA--------RGIGQAPGVPVIKKLYSNGNKIIVIIDKGPFKNNFIKEYLELYNIEIIELNL--LDDGELSEEGK 242 (320)
T ss_pred CeEEEEE--------eEEeHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHHHHhhCceEEEEe--cccCCCCcccc
Confidence 4777775 454444 789999999999899988765432211100 00000 000000 00000001112
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHh--cCCCEEEEE
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKL--LCVPIVMSY 235 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~--~~~p~v~~~ 235 (526)
..+.+++++.+.|+|++..|..+......+... .++++.+..
T Consensus 243 g~v~~~l~~~~~~~vy~CGP~~M~k~v~~~l~~~~~~i~~~~Sl 286 (320)
T PRK05802 243 DILKEIIKKEDINLIHCGGSDILHYKIIEYLDKLNEKIKLSCSN 286 (320)
T ss_pred chHHHHhcCCCCCEEEEECCHHHHHHHHHHHhhhcCCceEEEeC
Confidence 345566666678999999987776554444444 567665544
No 273
>PRK09739 hypothetical protein; Provisional
Probab=67.26 E-value=47 Score=29.76 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=29.1
Q ss_pred CcEEEEEeccCCCCccCch-HHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGY-KNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~-~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.|||++|..+ | ..+|. ...+..+++.+.+.|++|+++....
T Consensus 3 mmkiliI~~s-p--~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 3 SMRIYLVWAH-P--RHDSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CceEEEEEcC-C--CCCCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 4899999764 3 33453 4456778888999999999886543
No 274
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=67.24 E-value=49 Score=33.94 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=55.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
..|++++.+ ......+++.|.+.|.+|..+................ ..... ......-..-.-...+.
T Consensus 303 gkrv~i~g~----------~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~-l~~~~-~~~~~~v~~~~d~~e~~ 370 (435)
T cd01974 303 GKKFALYGD----------PDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQAL-LDASP-YGAGAKVYPGKDLWHLR 370 (435)
T ss_pred CCEEEEEcC----------hHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHH-HhhcC-CCCCcEEEECCCHHHHH
Confidence 457766643 3678999999999999997766543221110000000 00000 00000000011235777
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.+||+++.++.. ..++++.++|++.
T Consensus 371 ~~i~~~~pDliiG~s~~------~~~a~~~gip~v~ 400 (435)
T cd01974 371 SLLFTEPVDLLIGNTYG------KYIARDTDIPLVR 400 (435)
T ss_pred HHHhhcCCCEEEECccH------HHHHHHhCCCEEE
Confidence 88888899999998752 3456778999863
No 275
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=67.11 E-value=26 Score=36.70 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=56.0
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCcccccc-chhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVP-LSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 196 (526)
.+|++++.+ ...+..+++.|.+.|.++..+.............+.. .... +...... +.-.-.+.+
T Consensus 363 GKrvaI~gd----------pd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~l-l~~~--~~~~~~~v~~~~Dl~~l 429 (515)
T TIGR01286 363 GKRFAIYGD----------PDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKAL-LAAS--PYGQNATVWIGKDLWHL 429 (515)
T ss_pred CceEEEECC----------HHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHH-HhcC--CCCCccEEEeCCCHHHH
Confidence 457777653 3789999999999999987666544322111111000 0000 0000000 001134577
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
.+++.+.+||+++.+... ..+++..++|+|
T Consensus 430 ~~~l~~~~~DlliG~s~~------k~~a~~~giPli 459 (515)
T TIGR01286 430 RSLVFTEPVDFLIGNSYG------KYIQRDTLVPLI 459 (515)
T ss_pred HHHHhhcCCCEEEECchH------HHHHHHcCCCEE
Confidence 888888999999998742 345678899986
No 276
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=66.94 E-value=42 Score=34.40 Aligned_cols=85 Identities=19% Similarity=0.362 Sum_probs=55.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+|+++..+ ...+..+++.|.+.|.+|..+......... .. . ... .. ...-...+.
T Consensus 311 Gkrvai~~~----------~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~---~-----~~~---~~--~~~D~~~l~ 366 (432)
T TIGR01285 311 GKKVAIAAE----------PDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QK---L-----PVE---TV--VIGDLEDLE 366 (432)
T ss_pred CCEEEEEcC----------HHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-Hh---C-----CcC---cE--EeCCHHHHH
Confidence 467876643 257899999999999999888876542211 00 0 000 00 001224778
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+.+++.++|+++.+... ..++++.++|++
T Consensus 367 ~~i~~~~~dliig~s~~------k~~A~~l~ip~i 395 (432)
T TIGR01285 367 DLACAAGADLLITNSHG------RALAQRLALPLV 395 (432)
T ss_pred HHHhhcCCCEEEECcch------HHHHHHcCCCEE
Confidence 88888899999998753 345677899986
No 277
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=66.71 E-value=11 Score=32.08 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=30.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||+||+-. ...|-.......++..|.+.|++|.+.-...
T Consensus 1 Mk~LIlYs----tr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~ 39 (175)
T COG4635 1 MKTLILYS----TRDGQTRKIAEYIASHLRESGIQVDIQDLHA 39 (175)
T ss_pred CceEEEEe----cCCCcHHHHHHHHHHHhhhcCCeeeeeehhh
Confidence 78988854 3446677778999999999999999986543
No 278
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=66.63 E-value=59 Score=34.64 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC-eEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD-EVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
++-||+++.++ +..|.... .-+.+.|.+.|. .|..+.++.-. +-++. ...
T Consensus 68 ~~e~I~I~gDy----D~DGitst-ail~~~L~~~g~~~~~~~IP~R~~--eGYGl----------------------~~~ 118 (575)
T PRK11070 68 EGTRIIVVGDF----DADGATST-ALSVLALRSLGCSNVDYLVPNRFE--DGYGL----------------------SPE 118 (575)
T ss_pred CCCEEEEEEec----CccHHHHH-HHHHHHHHHcCCCceEEEeCCCCc--CCCCC----------------------CHH
Confidence 34589999884 44676544 446888999998 67776654311 00111 112
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
..+.+.+..+|+|+..+........+..++..|+.+|++-|..
T Consensus 119 ~i~~~~~~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 119 VVDQAHARGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred HHHHHHhcCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 3333444578999998877777777777888999999887753
No 279
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=66.56 E-value=41 Score=33.54 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=56.7
Q ss_pred cccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeE-EecccChhhHHHHHHc--CcEEEecCCCC-CCcHHHHH
Q 009759 335 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAV-FTGMLLGEELSQAYAS--GDVFVMPSESE-TLGLVVLE 410 (526)
Q Consensus 335 ~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~-~~g~v~~~~l~~~~~~--aDv~v~ps~~e-~~~~~ilE 410 (526)
.++++.+.+..+.+ +.+++++++....+.++......++. +.|. +.+.++... +|++|...... |. -..++
T Consensus 36 ~~n~~~l~~q~~~f-~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~---~~~~~l~~~~~vD~Vv~Ai~G~aGl-~ptl~ 110 (385)
T PRK05447 36 GKNVELLAEQAREF-RPKYVVVADEEAAKELKEALAAAGIEVLAGE---EGLCELAALPEADVVVAAIVGAAGL-LPTLA 110 (385)
T ss_pred CCCHHHHHHHHHHh-CCCEEEEcCHHHHHHHHHhhccCCceEEECh---hHHHHHhcCCCCCEEEEeCcCcccH-HHHHH
Confidence 57888888888888 34677777665556666544433343 3333 567777775 48888776543 44 46889
Q ss_pred HHHcCCcEEEeC
Q 009759 411 AMSSGIPVVGVR 422 (526)
Q Consensus 411 Ama~G~PvI~~~ 422 (526)
|+.+|++|...+
T Consensus 111 Ai~aGK~VaLAN 122 (385)
T PRK05447 111 AIRAGKRIALAN 122 (385)
T ss_pred HHHCCCcEEEeC
Confidence 999999999865
No 280
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=66.49 E-value=22 Score=36.95 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=55.3
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+|++++... .+...+++.|.+.|.+|..+............+... .. + ......-.-...+.
T Consensus 324 Gk~vaI~~~~----------~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~--~~---~--~~~v~~d~~~~e~~ 386 (475)
T PRK14478 324 GKRVLLYTGG----------VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKEL--MG---P--DAHMIDDANPRELY 386 (475)
T ss_pred CCEEEEEcCC----------chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHH--cC---C--CcEEEeCCCHHHHH
Confidence 4578665431 567899999999999999887654433221111000 00 0 00000011234677
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+.+++.+||+++.+... ..++++.++|++
T Consensus 387 ~~i~~~~pDliig~s~~------~~~a~k~giP~~ 415 (475)
T PRK14478 387 KMLKEAKADIMLSGGRS------QFIALKAGMPWL 415 (475)
T ss_pred HHHhhcCCCEEEecCch------hhhhhhcCCCEE
Confidence 77888899999998642 345677899987
No 281
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=66.44 E-value=31 Score=34.21 Aligned_cols=122 Identities=9% Similarity=-0.024 Sum_probs=64.6
Q ss_pred EEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecC--CCC
Q 009759 325 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS--ESE 402 (526)
Q Consensus 325 ~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps--~~e 402 (526)
...++++.....+=..+++.+.+. +.+...|... -....+.++..++++...+.+..- ..+
T Consensus 178 ~~w~~Snc~~~~~R~~~~~~L~~~--~~vd~yG~c~---------------~~~~~~~~~~~~~~~~ykF~lafENs~c~ 240 (349)
T PF00852_consen 178 AAWIVSNCNPHSGREEYVRELSKY--IPVDSYGKCG---------------NNNPCPRDCKLELLSKYKFYLAFENSNCP 240 (349)
T ss_dssp EEE--S-S--H-HHHHHHHHHHTT--S-EEE-SSTT-----------------SSS--S-HHHHHHTEEEEEEE-SS--T
T ss_pred EEEEeeCcCCcccHHHHHHHHHhh--cCeEccCCCC---------------CCCCcccccccccccCcEEEEEecCCCCC
Confidence 344444544443334445555444 5688888650 001122345777888888888653 223
Q ss_pred C-CcHHHHHHHHcCCcEEEeC--CCCCCceecccCCCceeEee-CCCCHHHHHHHHHHhhhCHHHHHHH
Q 009759 403 T-LGLVVLEAMSSGIPVVGVR--AGGIPDIIPEDQDGKIGYLF-NPGDLDDCLSKLEPLLYNQELRETM 467 (526)
Q Consensus 403 ~-~~~~ilEAma~G~PvI~~~--~gg~~e~v~~~~~~~~g~~~-~~~d~~~la~ai~~ll~d~~~~~~~ 467 (526)
+ ..=++.+|+.+|+..|.-. .....++++ ...-+-+ +..++++||+.|..+.+|++++.+.
T Consensus 241 dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P----~~SfI~~~df~s~~~La~yl~~l~~n~~~Y~~y 305 (349)
T PF00852_consen 241 DYITEKFWNALLAGTVPIYWGPPRPNYEEFAP----PNSFIHVDDFKSPKELADYLKYLDKNDELYNKY 305 (349)
T ss_dssp T---HHHHHHHHTTSEEEEES---TTHHHHS-----GGGSEEGGGSSSHHHHHHHHHHHHT-HHHHH--
T ss_pred CCCCHHHHHHHHCCeEEEEECCEecccccCCC----CCCccchhcCCCHHHHHHHHHHHhcCHHHHhhh
Confidence 3 3448999999997776665 455666662 2222222 3458999999999999998877764
No 282
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=66.29 E-value=75 Score=29.90 Aligned_cols=88 Identities=5% Similarity=-0.053 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHcCCcEEEeCCC---CCCceecccCCCceeEeeCC-CCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-
Q 009759 402 ETLGLVVLEAMSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEME- 476 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~~g---g~~e~v~~~~~~~~g~~~~~-~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~- 476 (526)
-+++..+.--|+||-.|+..... -..+.+ +....=+-+.. .+.++|.++|..+.++++..++++++++++++
T Consensus 155 ~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L---~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 155 VAWSVRLKYILACDSVVLKVKPEYYEFFSRGL---QPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred ccchhhHHHHHhcCceEEEeCCchhHHHHhcc---cCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 34566677788898888877642 122233 22222222322 12245999999999999999999999999995
Q ss_pred hCCHHHHHHHHHHHHHH
Q 009759 477 KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 477 ~fs~~~~~~~~~~~ly~ 493 (526)
..+.+.+..-+. .++.
T Consensus 232 ~L~~~~~~~Y~~-~ll~ 247 (256)
T smart00672 232 NLSMEDVYDYMF-HLLQ 247 (256)
T ss_pred HcCHHHHHHHHH-HHHH
Confidence 578877765554 4433
No 283
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=65.66 E-value=47 Score=27.78 Aligned_cols=61 Identities=20% Similarity=0.115 Sum_probs=44.0
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+++||++.+- ...++..-..-++..|+..|++|..+...-. ...+
T Consensus 2 ~~~~vl~~~~-----~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp------------------------------~e~i 46 (137)
T PRK02261 2 KKKTVVLGVI-----GADCHAVGNKILDRALTEAGFEVINLGVMTS------------------------------QEEF 46 (137)
T ss_pred CCCEEEEEeC-----CCChhHHHHHHHHHHHHHCCCEEEECCCCCC------------------------------HHHH
Confidence 3567766653 3356667777888899999999998865321 1367
Q ss_pred HHHHHhcCCCEEEECC
Q 009759 197 ISEVARFKPDIIHASS 212 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~ 212 (526)
.+.+.+.+||+|....
T Consensus 47 ~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 47 IDAAIETDADAILVSS 62 (137)
T ss_pred HHHHHHcCCCEEEEcC
Confidence 7778888999998865
No 284
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=65.55 E-value=29 Score=35.86 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchHH
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMV 217 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~ 217 (526)
.+...+++.|.+.|.+|..+.......+....+... . . .......-.-...+.+.+++.+||+++.+...
T Consensus 336 ~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~--~--~---~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~~~--- 405 (456)
T TIGR01283 336 VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIREL--M--G---EGTVMLDDANPRELLKLLLEYKADLLIAGGKE--- 405 (456)
T ss_pred chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHH--c--C---CCeEEEeCCCHHHHHHHHhhcCCCEEEEccch---
Confidence 567889999999999998886543322111110000 0 0 00000001133578888899999999987532
Q ss_pred HHHHHHHHhcCCCEEEEEe
Q 009759 218 FGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 218 ~~~~~~~~~~~~p~v~~~h 236 (526)
..+++..++|++...+
T Consensus 406 ---~~~a~k~giP~i~~~~ 421 (456)
T TIGR01283 406 ---RYTALKLGIPFCDINH 421 (456)
T ss_pred ---HHHHHhcCCCEEEccc
Confidence 3345678999876433
No 285
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=65.33 E-value=42 Score=32.35 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=30.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||+++.... -+...-.-.....++++|.+.||+|.++..
T Consensus 1 ~~v~v~~gg~-s~e~~~sl~s~~~i~~al~~~g~~~~~i~~ 40 (299)
T PRK14571 1 MRVALLMGGV-SREREISLRSGERVKKALEKLGYEVTVFDV 40 (299)
T ss_pred CeEEEEeCCC-CCCccchHHHHHHHHHHHHHcCCeEEEEcc
Confidence 7898887642 244444446688999999999999999854
No 286
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=65.21 E-value=61 Score=31.96 Aligned_cols=116 Identities=8% Similarity=-0.005 Sum_probs=62.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC--ccccCc---eeccccccCCCccccccc----h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP--QEFYGA---KLIGSRSFPCPWYQKVPL----S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~----~ 189 (526)
|||++++..-| ..|....+..+.+.+.+.|++|.-+..+.... .++... .+......+-........ .
T Consensus 1 ~ri~Il~sGG~---apG~N~~i~~~v~~~~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGD---APGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCC---chhHHHHHHHHHHHHHHCCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCC
Confidence 68999987533 35888889999999999998877776543211 011000 000000000000000000 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHH-----hcCCCEEEEEec
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK-----LLCVPIVMSYHT 237 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~-----~~~~p~v~~~h~ 237 (526)
.....++.+.+++.+.|.+++-.-......+..+.. ..++++|..-..
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkT 130 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeec
Confidence 123456788888999998888664333222222222 337787765443
No 287
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=65.15 E-value=63 Score=31.81 Aligned_cols=117 Identities=12% Similarity=-0.011 Sum_probs=67.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCceeccccccCC------Cccccc-cc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAKLIGSRSFPC------PWYQKV-PL 188 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~-~~ 188 (526)
.+||+++++.-+ --|....+..+.+.+...|.+|.-+..++..... ........+..+.. ...+.. ..
T Consensus 2 ~kkIaIlTSGGd---aPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGD---APGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCC---CccHHHHHHHHHHHHHHcCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcc
Confidence 479999987633 3478888999999999999999988766532110 11111100000000 000000 11
Q ss_pred hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 189 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 189 ~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.........+-+++.+.|.+++-.-......+..++...++++|-.-..
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkT 127 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKT 127 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCC
Confidence 1222346777788899998888665444445566677777887754433
No 288
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=64.96 E-value=59 Score=26.48 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=46.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
||+.|+....|+ ..-.....+.+++++.+.| ++|.++...++...... ...|. ...+.......
T Consensus 1 m~~~Ivvt~ppY--g~q~a~~A~~fA~all~~gh~~v~iFly~DgV~~~~~---------~~~Pa----~dEf~l~~~~~ 65 (126)
T COG1553 1 MKYTIVVTGPPY--GTESAFSALRFAEALLEQGHELVRLFLYQDGVHNGNK---------GQKPA----SDEFNLIQAWL 65 (126)
T ss_pred CeEEEEEecCCC--ccHHHHHHHHHHHHHHHcCCeEEEEEEeecccccccc---------CCCCc----ccccchHHHHH
Confidence 788888775443 2234567899999999996 78888876553211100 00000 01123345667
Q ss_pred HHHHhcCCCEEEECC
Q 009759 198 SEVARFKPDIIHASS 212 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~ 212 (526)
+++.+.+..+-.|..
T Consensus 66 ~l~~~~gv~v~~C~~ 80 (126)
T COG1553 66 ELLTEQGVPVKLCVA 80 (126)
T ss_pred HHHHHcCCcEeeeHH
Confidence 777777777777643
No 289
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=64.55 E-value=65 Score=30.13 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=26.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||||+--+. |=.+.-+..|+++|.+. ++|+|+++..+
T Consensus 1 M~ILlTNDD------Gi~a~Gi~aL~~~l~~~-~~V~VvAP~~~ 37 (250)
T PRK00346 1 MRILLTNDD------GIHAPGIRALAEALREL-ADVTVVAPDRE 37 (250)
T ss_pred CeEEEECCC------CCCChhHHHHHHHHHhC-CCEEEEeCCCC
Confidence 788666432 22334578899999998 79999998654
No 290
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=64.54 E-value=67 Score=31.27 Aligned_cols=140 Identities=17% Similarity=0.123 Sum_probs=68.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||.++.. +.+-..|+..|.+.||+|.++..+.+...+.... +...-+++ .-.++..+.....+.+
T Consensus 2 ~kI~ViGa----------GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~---~~N~~yLp-~i~lp~~l~at~Dl~~ 67 (329)
T COG0240 2 MKIAVIGA----------GSWGTALAKVLARNGHEVRLWGRDEEIVAEINET---RENPKYLP-GILLPPNLKATTDLAE 67 (329)
T ss_pred ceEEEEcC----------ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc---CcCccccC-CccCCcccccccCHHH
Confidence 78888743 3456789999999999999999765432221110 00000111 1112222333345555
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHH---hcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChh
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAK---LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 275 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~---~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~ 275 (526)
.++ ..|+|++--|.......+...+ ..+.++|...-+..+... +.+-.+....+...-..+..-+.
T Consensus 68 a~~--~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~---------~l~seii~e~l~~~~~~vLSGPs 136 (329)
T COG0240 68 ALD--GADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETG---------RLLSEIIEEELPDNPIAVLSGPS 136 (329)
T ss_pred HHh--cCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCc---------chHHHHHHHHcCCCeEEEEECcc
Confidence 565 5898888776544322221111 234555555544433211 11112222233322255555666
Q ss_pred HHHHHHHh
Q 009759 276 IGKDLEAA 283 (526)
Q Consensus 276 ~~~~l~~~ 283 (526)
.++++.+.
T Consensus 137 ~A~EVa~g 144 (329)
T COG0240 137 FAKEVAQG 144 (329)
T ss_pred HHHHHhcC
Confidence 77776554
No 291
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=64.53 E-value=47 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=28.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.++|++|..+ +-|. +..+..+++|.++||+|.=+.+..
T Consensus 16 ~K~IAvVG~S-~~P~-----r~sy~V~kyL~~~GY~ViPVNP~~ 53 (140)
T COG1832 16 AKTIAVVGAS-DKPD-----RPSYRVAKYLQQKGYRVIPVNPKL 53 (140)
T ss_pred CceEEEEecC-CCCC-----ccHHHHHHHHHHCCCEEEeeCccc
Confidence 3589888543 2232 567889999999999999887744
No 292
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=64.45 E-value=39 Score=29.51 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
||.+..-..+++.|.++||+|++++.+........+++++ ... +.-...+.+.++ +.|.|+..-.
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~-----~~d--------~~d~~~~~~al~--~~d~vi~~~~ 69 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEII-----QGD--------LFDPDSVKAALK--GADAVIHAAG 69 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEE-----ESC--------TTCHHHHHHHHT--TSSEEEECCH
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccc-----eee--------ehhhhhhhhhhh--hcchhhhhhh
Confidence 6667778889999999999999999775432221111111 111 112235555555 6788877543
Q ss_pred c-----hHHHHHHHHHHhcCCCEEEEEec
Q 009759 214 G-----IMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 214 ~-----~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
. ......+-.++..+++-++.+-.
T Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 70 PPPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp STTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred hhcccccccccccccccccccccceeeec
Confidence 1 11111223345567776665544
No 293
>PRK03202 6-phosphofructokinase; Provisional
Probab=64.26 E-value=64 Score=31.50 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=63.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--cccCc---eeccccccCCCccccccc----h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--EFYGA---KLIGSRSFPCPWYQKVPL----S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~----~ 189 (526)
|||++++..-| ..|....+..+.+.+.+.|++|.-+..+....- ..... .+.......-........ .
T Consensus 2 k~i~Il~sGG~---apG~Na~i~~~~~~~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~ 78 (320)
T PRK03202 2 KRIGVLTSGGD---APGMNAAIRAVVRTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKD 78 (320)
T ss_pred cEEEEECCCCC---cHHHHHHHHHHHHHHHHCCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCC
Confidence 68999987533 357888889999999999998877765442111 00000 000110000000111010 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.....++.+.+++++.|.+++-.-......+..++ ..++|+|..-..
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkT 125 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGT 125 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHH-hcCCcEEEeccc
Confidence 12356788888899999888876433333333333 358888764433
No 294
>PRK04148 hypothetical protein; Provisional
Probab=64.11 E-value=31 Score=28.69 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=50.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc--cCceeccccccCCCccccccchhcccH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF--YGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
+.+||+.|... .-..++..|++.|++|+.+-.+....+.. .+......-.+.. ..
T Consensus 16 ~~~kileIG~G-----------fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p------------~~ 72 (134)
T PRK04148 16 KNKKIVELGIG-----------FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNP------------NL 72 (134)
T ss_pred cCCEEEEEEec-----------CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCC------------CH
Confidence 34789888542 11356888889999999987554311100 0111111100100 01
Q ss_pred HHHHHHHhcCCCEEEECCCchHH-HHHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~-~~~~~~~~~~~~p~v~~~h 236 (526)
.+.+ +.|+|+...+..-. ...+-+++..++++++.--
T Consensus 73 ~~y~-----~a~liysirpp~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 73 EIYK-----NAKLIYSIRPPRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred HHHh-----cCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1111 78999998875443 3355578888998877543
No 295
>PRK11519 tyrosine kinase; Provisional
Probab=63.64 E-value=71 Score=35.25 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=31.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+-|+++|+... ..-|-.....+|+..|+..|+.|.++-.+.
T Consensus 525 ~~kvi~vts~~---~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVS---PSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCC---CCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 44787887642 345777789999999999999999997653
No 296
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=63.08 E-value=1e+02 Score=30.59 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=56.2
Q ss_pred cHHHHHHHHHhCC-CcEEEEEeCCccHHHHHHHhc-------------CCCeEEecccChhhHHHHHHcCcEEEecCCCC
Q 009759 337 SLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPSESE 402 (526)
Q Consensus 337 g~~~li~a~~~l~-~~~l~ivG~g~~~~~l~~l~~-------------~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e 402 (526)
-+..+++++...+ .+.+.|.+ |.....+..... ...+.++.++++++..+++..||+-++= .|
T Consensus 196 ~l~~ll~~~~~~~~pv~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVR--GE 272 (374)
T PF10093_consen 196 ALASLLDAWAASPKPVHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVR--GE 272 (374)
T ss_pred HHHHHHHHHhcCCCCeEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEe--cc
Confidence 3888999998775 45555554 444555543332 1148899999999999999999997743 22
Q ss_pred CCcHHHHHHHHcCCcEEEe
Q 009759 403 TLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 403 ~~~~~ilEAma~G~PvI~~ 421 (526)
=+.+=|.-+|+|.|=.
T Consensus 273 ---DSfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 273 ---DSFVRAQWAGKPFVWH 288 (374)
T ss_pred ---hHHHHHHHhCCCceEe
Confidence 2567899999999844
No 297
>PRK04155 chaperone protein HchA; Provisional
Probab=63.07 E-value=64 Score=30.91 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=30.0
Q ss_pred CcEEEEEeccC-CCC-------ccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPS-PFS-------YVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~-p~~-------~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.||||+|+... .+. ..|=...-+..-...|.+.|++|++++...
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 34999996543 222 122233446777889999999999999754
No 298
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=62.74 E-value=32 Score=33.73 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
||.+..-..+++.|.++|++|.++...
T Consensus 13 GatGfiG~~l~~~L~~~G~~V~~~~r~ 39 (340)
T PLN02653 13 GITGQDGSYLTEFLLSKGYEVHGIIRR 39 (340)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEecc
Confidence 444455577899999999999988653
No 299
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=62.61 E-value=1.2e+02 Score=27.34 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=50.6
Q ss_pred CcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCce
Q 009759 350 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 429 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~ 429 (526)
+.+++++.. ...+++.++.....+.+.... -....+..+|+++..+..+.....+.+....|++|-+.+.+...++
T Consensus 33 ga~V~VIs~-~~~~~l~~l~~~~~i~~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f 108 (202)
T PRK06718 33 GAHIVVISP-ELTENLVKLVEEGKIRWKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNV 108 (202)
T ss_pred CCeEEEEcC-CCCHHHHHHHhCCCEEEEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeE
Confidence 467777764 334556666665556664432 1234567899988877666666667766678898888887766666
Q ss_pred e
Q 009759 430 I 430 (526)
Q Consensus 430 v 430 (526)
+
T Consensus 109 ~ 109 (202)
T PRK06718 109 V 109 (202)
T ss_pred E
Confidence 5
No 300
>PRK05920 aromatic acid decarboxylase; Validated
Probab=62.57 E-value=17 Score=32.74 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=28.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.+||++-... +.+......+++.|.+.|++|.++.+..
T Consensus 3 ~krIllgITG------siaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITG------ASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 4688777541 2334568999999999999999998754
No 301
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=62.17 E-value=25 Score=33.23 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=45.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
+|+++|+.- ....| ..|++.|.++||+|+=+........... +..........+...-....+.-...+.+
T Consensus 2 ~K~ALITGI---TGQDG-----sYLa~lLLekGY~VhGi~Rrss~~n~~r-i~L~~~~~~~~~~l~l~~gDLtD~~~l~r 72 (345)
T COG1089 2 GKVALITGI---TGQDG-----SYLAELLLEKGYEVHGIKRRSSSFNTPR-IHLYEDPHLNDPRLHLHYGDLTDSSNLLR 72 (345)
T ss_pred CceEEEecc---cCCch-----HHHHHHHHhcCcEEEEEeeccccCCccc-ceeccccccCCceeEEEeccccchHHHHH
Confidence 688888753 21122 4589999999999999876533211110 01111111111111112223444567888
Q ss_pred HHHhcCCCEEEE
Q 009759 199 EVARFKPDIIHA 210 (526)
Q Consensus 199 ~l~~~~pDiV~~ 210 (526)
.+++.+||-|+-
T Consensus 73 ~l~~v~PdEIYN 84 (345)
T COG1089 73 ILEEVQPDEIYN 84 (345)
T ss_pred HHHhcCchhhee
Confidence 999999997764
No 302
>PRK14071 6-phosphofructokinase; Provisional
Probab=62.16 E-value=70 Score=31.81 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=61.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCC--c--cccCc---eeccccccCCCccccc---
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVP--Q--EFYGA---KLIGSRSFPCPWYQKV--- 186 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~--~--~~~~~---~~~~~~~~~~~~~~~~--- 186 (526)
.+||++++..-| ..|....+..+++...+. |++|.-+..+.... . ..... .+..+...+-......
T Consensus 4 ~~~I~IltsGG~---apGmNa~i~~vv~~a~~~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~ 80 (360)
T PRK14071 4 KKRIGILTSGGD---CAGLNAVIRAVVHRARGTYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKG 80 (360)
T ss_pred CCEEEEECCCCC---chhHHHHHHHHHHHHHhcCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCC
Confidence 479999987533 357778888999988875 98777766543211 0 11000 0001100010000000
Q ss_pred -cch--------hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 187 -PLS--------LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 187 -~~~--------~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
++. ......+.+.+++++.|.+++-.-......+..+.+..++|+|..-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPk 139 (360)
T PRK14071 81 DPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPK 139 (360)
T ss_pred CccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecc
Confidence 000 11235678888899999888866433322333344434888876433
No 303
>PLN02285 methionyl-tRNA formyltransferase
Probab=62.07 E-value=57 Score=32.09 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCEEEECCC
Q 009759 195 RIISEVARFKPDIIHASSP 213 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~ 213 (526)
.+.+.+++.+||++++..+
T Consensus 84 ~~~~~l~~~~~Dliv~~~~ 102 (334)
T PLN02285 84 DFLSALRELQPDLCITAAY 102 (334)
T ss_pred HHHHHHHhhCCCEEEhhHh
Confidence 4566788899999998764
No 304
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=61.75 E-value=54 Score=31.35 Aligned_cols=20 Identities=15% Similarity=0.502 Sum_probs=15.9
Q ss_pred cHHHHHHHHhcCCCEEEECC
Q 009759 193 SPRIISEVARFKPDIIHASS 212 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~ 212 (526)
...+.+++++++||+|+.+.
T Consensus 110 ~~~L~~iIr~~~PdvVvT~d 129 (283)
T TIGR03446 110 AEPLVRVIREFRPHVITTYD 129 (283)
T ss_pred HHHHHHHHHHcCCEEEEecC
Confidence 45777888889999998863
No 305
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=61.52 E-value=23 Score=33.36 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=33.2
Q ss_pred hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 383 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
+++.+++..+|+++..+..+...-.+..|+.+|+|+|...+|-
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF 94 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 5677777789999977765555567788999999999876553
No 306
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=61.47 E-value=1.2e+02 Score=28.75 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=94.2
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
.|.++.... ..-=....+..+-+++.+.||.+.++..++.... - ...+.
T Consensus 3 ~IGvivp~~---~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~---------------------------e-~~i~~ 51 (279)
T PF00532_consen 3 TIGVIVPDI---SNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEK---------------------------E-EYIEL 51 (279)
T ss_dssp EEEEEESSS---TSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHH---------------------------H-HHHHH
T ss_pred EEEEEECCC---CCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHH---------------------------H-HHHHH
Confidence 577776542 1122557788899999999999999877653111 1 34455
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh----h
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV----A 275 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~----~ 275 (526)
+.+.+.|-+++....... ..+......++|+|+.-...... ...+.|.+-.. .
T Consensus 52 l~~~~vDGiI~~s~~~~~-~~l~~~~~~~iPvV~~~~~~~~~----------------------~~~~~V~~D~~~a~~~ 108 (279)
T PF00532_consen 52 LLQRRVDGIILASSENDD-EELRRLIKSGIPVVLIDRYIDNP----------------------EGVPSVYIDNYEAGYE 108 (279)
T ss_dssp HHHTTSSEEEEESSSCTC-HHHHHHHHTTSEEEEESS-SCTT----------------------CTSCEEEEEHHHHHHH
T ss_pred HHhcCCCEEEEecccCCh-HHHHHHHHcCCCEEEEEeccCCc----------------------ccCCEEEEcchHHHHH
Confidence 677799987776543221 11222223389988754432111 12344433322 2
Q ss_pred HHHHHHHhcccCCCc-EEEeecCCCCCCCCCCcccHHHHHhhc-CCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEE
Q 009759 276 IGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRSSEMRWRLS-NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARI 353 (526)
Q Consensus 276 ~~~~l~~~~~~~~~k-i~vi~ngid~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l 353 (526)
..+++.+.+. .+ +.++...-+.. .........+..+. .+.+-....++.|..+...|.+.+.+.++.-|++..
T Consensus 109 a~~~Li~~Gh---~~~I~~i~~~~~~~--~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~ida 183 (279)
T PF00532_consen 109 ATEYLIKKGH---RRPIAFIGGPEDSS--TSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDA 183 (279)
T ss_dssp HHHHHHHTTC---CSTEEEEEESTTTH--HHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SE
T ss_pred HHHHHHhccc---CCeEEEEecCcchH--HHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEE
Confidence 2344444443 45 65554321111 00000001111110 111223345566777777888888888887788887
Q ss_pred EEEeCC
Q 009759 354 AFIGDG 359 (526)
Q Consensus 354 ~ivG~g 359 (526)
+++++.
T Consensus 184 i~~~nd 189 (279)
T PF00532_consen 184 IFCAND 189 (279)
T ss_dssp EEESSH
T ss_pred EEEeCH
Confidence 777764
No 307
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.13 E-value=12 Score=32.19 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchH
Q 009759 137 KNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIM 216 (526)
Q Consensus 137 ~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~ 216 (526)
+..-..++..|.++||+|.++..+....+... ..+......+. ...+........+.+.++ +.|+|++.-|...
T Consensus 8 G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~---~~~~n~~~~~~-~~l~~~i~~t~dl~~a~~--~ad~IiiavPs~~ 81 (157)
T PF01210_consen 8 GNWGTALAALLADNGHEVTLWGRDEEQIEEIN---ETRQNPKYLPG-IKLPENIKATTDLEEALE--DADIIIIAVPSQA 81 (157)
T ss_dssp SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHH---HHTSETTTSTT-SBEETTEEEESSHHHHHT--T-SEEEE-S-GGG
T ss_pred CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH---HhCCCCCCCCC-cccCcccccccCHHHHhC--cccEEEecccHHH
Confidence 45667899999999999999987642111110 00110011111 111112223334555554 7899998876444
No 308
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=60.91 E-value=38 Score=34.66 Aligned_cols=96 Identities=20% Similarity=0.138 Sum_probs=55.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
..|++++.+ ......+++.|.+.|.++..+.............+... ..... ...-....-...+.
T Consensus 300 gkrv~v~g~----------~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~-~~~~~---~~~v~~~~d~~e~~ 365 (429)
T cd03466 300 GRKAAIYGE----------PDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDL-KEYVE---KCVILDGADFFDIE 365 (429)
T ss_pred CCEEEEEcC----------HHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHH-HhcCC---ceEEEeCCCHHHHH
Confidence 357766643 36889999999999999976665432221111000000 00000 00000011235788
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+++++.+||+++.+... ..++++.++|++-
T Consensus 366 ~~l~~~~~dliiG~s~~------~~~a~~~~ip~~~ 395 (429)
T cd03466 366 SYAKELKIDVLIGNSYG------RRIAEKLGIPLIR 395 (429)
T ss_pred HHHHhcCCCEEEECchh------HHHHHHcCCCEEE
Confidence 88899999999998742 3456778999874
No 309
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=60.81 E-value=50 Score=26.40 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=54.8
Q ss_pred EEEEEecccccccHHHHHHHHHhC-CCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC
Q 009759 325 LIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 401 (526)
Q Consensus 325 ~i~~vG~l~~~Kg~~~li~a~~~l-~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~ 401 (526)
.++.+|-=.. |- ..+.++... ++++++-+-+ +..+..+...+..++. .+ .++.+++. ..|++++.+..
T Consensus 2 ~v~iiG~G~~--g~-~~~~~~~~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~--~~---~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSI--GR-RHLRALLRSSPDFEVVAVCD-PDPERAEAFAEKYGIP--VY---TDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHH--HH-HHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHTTSE--EE---SSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHH--HH-HHHHHHHhcCCCcEEEEEEe-CCHHHHHHHHHHhccc--ch---hHHHHHHHhhcCCEEEEecCC
Confidence 3566664211 22 334444444 6776653333 3344555555555666 22 34666676 68999888776
Q ss_pred CCCcHHHHHHHHcCCcEEEeC
Q 009759 402 ETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~ 422 (526)
....-.+.+++..|++|++-.
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEES
T ss_pred cchHHHHHHHHHcCCEEEEEc
Confidence 666778899999999998754
No 310
>PLN02712 arogenate dehydrogenase
Probab=60.75 E-value=35 Score=37.11 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
....++|||+||. .+..-..+++.|.+.|++|.++...
T Consensus 47 ~~~~~~~kIgIIG----------~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 47 PDNTTQLKIAIIG----------FGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CccCCCCEEEEEc----------cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567789999983 2345567889999999998877653
No 311
>PRK08177 short chain dehydrogenase; Provisional
Probab=60.71 E-value=24 Score=32.23 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|.+..-..+++.|.+.|++|.++..+..
T Consensus 9 ~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 9 ASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 3344456688999999999998876543
No 312
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=60.61 E-value=1.1e+02 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=24.7
Q ss_pred hhHHHHHHc--CcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 383 EELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 383 ~~l~~~~~~--aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+++.++++. .|++++........-..-.+...|+..|..-
T Consensus 136 ~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 136 DELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNF 177 (213)
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeec
Confidence 567777765 7888776544333333455667897666553
No 313
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=60.30 E-value=34 Score=20.38 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=21.3
Q ss_pred cEEEEEeccC-CCCccCchHHHHHHHHHHHHHCCCeEE
Q 009759 119 RRIALFVEPS-PFSYVSGYKNRFQNFIKYLREMGDEVM 155 (526)
Q Consensus 119 mkIliv~~~~-p~~~~gG~~~~~~~l~~~L~~~G~~V~ 155 (526)
|||+++--.. -.....--+.-...|.+.+.++|.+|.
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd 38 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNVD 38 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCCC
Confidence 7888884321 111222334456778899999998874
No 314
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=59.53 E-value=35 Score=34.66 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=53.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+|++++.+. .+...+++.|.+.|.+|..+.............. .. .+ . ......-.....+.
T Consensus 287 gkrv~i~~~~----------~~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~--~~--~~--~-~~~v~~~~~~~e~~ 349 (410)
T cd01968 287 GKKAALYTGG----------VKSWSLVSALQDLGMEVVATGTQKGTKEDYERIK--EL--LG--E-GTVIVDDANPRELK 349 (410)
T ss_pred CCEEEEEcCC----------chHHHHHHHHHHCCCEEEEEecccCCHHHHHHHH--HH--hC--C-CcEEEeCCCHHHHH
Confidence 4577665431 3468899999999999988865443222111000 00 00 0 00000011234677
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.+||+++.+... ..++++.++|++-
T Consensus 350 ~~i~~~~pDl~ig~s~~------~~~a~~~gip~~~ 379 (410)
T cd01968 350 KLLKEKKADLLVAGGKE------RYLALKLGIPFCD 379 (410)
T ss_pred HHHhhcCCCEEEECCcc------hhhHHhcCCCEEE
Confidence 88888899999998642 2356778999874
No 315
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=59.18 E-value=62 Score=30.96 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=64.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC-----CCccccCceeccccccCCCcccc---ccc-h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG-----VPQEFYGAKLIGSRSFPCPWYQK---VPL-S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~-~ 189 (526)
+||++++..-| ..|....+..+++.....|++|.-+..+.. ...+.....+.......-..... ... .
T Consensus 1 KrI~Il~sGG~---apG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGD---APGMNAAIRGVVRYAIRRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS-----TTHHHHHHHHHHHHHHTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGS
T ss_pred CeEEEEecCCC---chhhhHHHHHHHHHHHhcCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccc
Confidence 48999987633 458888899999999999998776643221 00111111111111111000000 000 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCC
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHV 239 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 239 (526)
.....++.+.+++++.|.+++-.-......+..+....++++|..-....
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTID 127 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTID 127 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETT
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEecccc
Confidence 11223577788899999888876544444455555566688877555433
No 316
>PRK09271 flavodoxin; Provisional
Probab=59.17 E-value=20 Score=30.86 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=29.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||+|+.. ...|..+..+..+++.|.+.|++|.+...
T Consensus 1 mkv~IvY~----S~tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 1 MRILLAYA----SLSGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred CeEEEEEE----cCCchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 78888854 34577888899999999999999887643
No 317
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=59.16 E-value=1.7e+02 Score=28.04 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|+..+-..+++.|.++|++|.++...
T Consensus 8 ggd~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 8 GGDARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEecc
Confidence 44577789999999999999999864
No 318
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=59.15 E-value=89 Score=29.48 Aligned_cols=89 Identities=11% Similarity=0.175 Sum_probs=57.5
Q ss_pred hHHHHHHcCcEEEecCC-CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh--C
Q 009759 384 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY--N 460 (526)
Q Consensus 384 ~l~~~~~~aDv~v~ps~-~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~--d 460 (526)
.-..-++.||++|.-.. .|++=-++++.. -+.+++....++..+. ......+..++.+...+++.|.+.+. |
T Consensus 45 ~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~~----~~~dPH~Wldp~n~~~~a~~I~~~L~~~d 119 (264)
T cd01020 45 TDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDDK----EGDNPHLWYDPETMSKVANALADALVKAD 119 (264)
T ss_pred HHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccCC----CCCCCceecCHhHHHHHHHHHHHHHHHhC
Confidence 44566788999987653 566666676655 4556666544432111 12234456777788888888888876 7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 009759 461 QELRETMGQAARQEMEK 477 (526)
Q Consensus 461 ~~~~~~~~~~a~~~~~~ 477 (526)
|+......+|+.++.++
T Consensus 120 P~~~~~y~~N~~~~~~~ 136 (264)
T cd01020 120 PDNKKYYQANAKKFVAS 136 (264)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 87777777777766543
No 319
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.91 E-value=53 Score=34.36 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCC-CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 139 RFQNFIKYLREMG-DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 139 ~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
-+..++..|.+.| |+|.++-..... . ....+.+.+++.+||+|-+...
T Consensus 24 gl~~lAa~L~~~G~~~V~iiD~~~~~----------------~-----------~~~~~~~~l~~~~pdvVgis~~ 72 (497)
T TIGR02026 24 WVAYIGGALLDAGYHDVTFLDAMTGP----------------L-----------TDEKLVERLRAHCPDLVLITAI 72 (497)
T ss_pred HHHHHHHHHHhcCCcceEEecccccC----------------C-----------CHHHHHHHHHhcCcCEEEEecC
Confidence 4677888899999 899998432110 0 1135677788889999988654
No 320
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=58.70 E-value=12 Score=36.48 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=33.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+|+.+ |.....-.......|..+.+++||+|.++.+..
T Consensus 1 m~~~~~~~--~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMD--PIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeC--CHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 79999986 455555555678899999999999999998765
No 321
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=58.65 E-value=55 Score=32.62 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
.+.+|+|..-+.. ...-.+-+++|++.|+.|.++..+...... ...+....+-. .....
T Consensus 2 gsg~i~Igqa~ef---------dysG~qac~aLkeeg~~vvlvnsnpAti~t---d~e~AD~~y~e---------P~~~E 60 (400)
T COG0458 2 GSGPIVIGQAAEF---------DYSGTQACKALKEEGYGVVLVNSNPATIMT---DPELADKVYIE---------PITKE 60 (400)
T ss_pred CCCceeeEeeeee---------chhHHHHHHHHHhcCCeEEEEcCCCccccC---Cchhcceeeee---------cCcHH
Confidence 4567888666542 223467899999999999999877642211 01111111111 12345
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHH-HHHHHH-----hcCCCEEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFG-ALIIAK-----LLCVPIVMS 234 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~-~~~~~~-----~~~~p~v~~ 234 (526)
...+++.+.+||.+.-.......+. ++.+.. ..|++++.+
T Consensus 61 ~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs 106 (400)
T COG0458 61 PVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGS 106 (400)
T ss_pred HHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEec
Confidence 7788889999999877654333322 222222 347777754
No 322
>PRK11914 diacylglycerol kinase; Reviewed
Probab=58.41 E-value=98 Score=29.91 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=28.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||+++|.++ ....|........+.+.|.+.|+++.++....
T Consensus 9 ~~~~iI~NP--~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 9 GKVTVLTNP--LSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred ceEEEEECC--CCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 688888872 22223334566788999999999988776543
No 323
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=58.36 E-value=26 Score=33.34 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
||.+..-..+++.|.+.||+|.++..
T Consensus 6 G~tG~iG~~l~~~l~~~g~~v~~~~r 31 (287)
T TIGR01214 6 GANGQLGRELVQQLSPEGRVVVALTS 31 (287)
T ss_pred cCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 55556677889999999999988764
No 324
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=58.19 E-value=1.4e+02 Score=26.79 Aligned_cols=107 Identities=11% Similarity=0.161 Sum_probs=64.1
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCC-CeEEeccc-ChhhHHHHHH--cCcEEEecCCCCC----CcHHHHHHHH---cCCc
Q 009759 350 EARIAFIGDGP-YREELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSESET----LGLVVLEAMS---SGIP 417 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~-~V~~~g~v-~~~~l~~~~~--~aDv~v~ps~~e~----~~~~ilEAma---~G~P 417 (526)
++++.++.+.+ ....++...... .+...+.. +.++....+. ..|++++-....+ -|..+++.+. .++|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 35667776554 234455555443 33444433 2245555554 3688887544322 4666676664 3456
Q ss_pred EEEe-CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 418 VVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 418 vI~~-~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
||.- ..... ...+ +.|..|++..+.+++++.++|..++.
T Consensus 83 iIvls~~~~~~~~~~a~---~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 83 IIVLTMNNNPAILSAVL---DLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred EEEEEecCCHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 6644 33221 2334 67889999999999999999988765
No 325
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=58.17 E-value=52 Score=32.03 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=42.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
||||+.... + . . .+++.|++.| ++|.++............. ..+..+... ...+...+
T Consensus 2 ~~vLv~g~~-------~--~-~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~d-----~~~~~p~~~----~~~~~~~l 61 (326)
T PRK12767 2 MNILVTSAG-------R--R-V-QLVKALKKSLLKGRVIGADISELAPALYFAD-----KFYVVPKVT----DPNYIDRL 61 (326)
T ss_pred ceEEEecCC-------c--c-H-HHHHHHHHhccCCEEEEECCCCcchhhHhcc-----CcEecCCCC----ChhHHHHH
Confidence 788777431 1 1 1 7899999995 8888776543221111000 011111111 12244578
Q ss_pred HHHHHhcCCCEEEECCC
Q 009759 197 ISEVARFKPDIIHASSP 213 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~ 213 (526)
.++++++++|+|+....
T Consensus 62 ~~~~~~~~id~ii~~~d 78 (326)
T PRK12767 62 LDICKKEKIDLLIPLID 78 (326)
T ss_pred HHHHHHhCCCEEEECCc
Confidence 88889999999988653
No 326
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=58.16 E-value=31 Score=24.09 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=40.9
Q ss_pred EEEEEe-CCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 352 RIAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 352 ~l~ivG-~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
.+.+.| .+.+++.+.+++...+-.+.+.+.. .+..+|. .+..+-+.-.|...|+|||..+
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~--------~~THLI~---~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGGKYSKDLTK--------KTTHLIC---SSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-EEESSSST--------T-SEEEE---ES--HHHHHHHHHCTSEEEEHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEeccccC--------CceEEEE---eCCCcHHHHHHHHCCCcEECCC
Confidence 345556 3456788888888888888887743 5566665 4556888999999999999753
No 327
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=57.90 E-value=27 Score=34.15 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=24.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||++. ||.+..-..+++.|.++|++|.++..
T Consensus 1 m~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVT---------GGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEE---------CCCChHHHHHHHHHHHCCCeEEEEec
Confidence 677665 44455667788999999999998753
No 328
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=57.90 E-value=19 Score=35.03 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=26.1
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+.+|||+++.. |+ .-..++..|.+.||+|+++..+.
T Consensus 3 ~~~m~I~IiG~-------Ga---iG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGT-------GA---IGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECC-------CH---HHHHHHHHHHHCCCeEEEEEeCC
Confidence 45589998843 33 33457778888999999998754
No 329
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=57.69 E-value=72 Score=37.04 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=44.6
Q ss_pred CCcEEEEEeccCCCCccC---chHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 117 RPRRIALFVEPSPFSYVS---GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~g---G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
..+|||++... | ...| -......+++++|++.|++|.++..+........ .. ....+..+ ...
T Consensus 6 ~~~kvLiig~G-~-~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~--~~-aD~~y~~p---------~~~ 71 (1066)
T PRK05294 6 DIKKILIIGSG-P-IVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDP--EM-ADATYIEP---------ITP 71 (1066)
T ss_pred CCCEEEEECCc-h-hhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCc--cc-CCEEEECC---------CCH
Confidence 34688888542 1 1111 0112235789999999999999976553210000 00 00001111 013
Q ss_pred HHHHHHHHhcCCCEEEEC
Q 009759 194 PRIISEVARFKPDIIHAS 211 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~ 211 (526)
..+.++++++++|.|+..
T Consensus 72 e~l~~ii~~e~~D~Iip~ 89 (1066)
T PRK05294 72 EFVEKIIEKERPDAILPT 89 (1066)
T ss_pred HHHHHHHHHHCcCEEEEC
Confidence 567788889999999975
No 330
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=57.63 E-value=17 Score=33.19 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=26.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|||+|+ ||.+..-..+++.|.+.||+|.++..+
T Consensus 1 MkI~II---------GG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVL---------GGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEE---------cCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 788777 444567778999999999999987554
No 331
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.61 E-value=71 Score=28.87 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=29.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|..++++. +| ..|-.....+|++.|++.+|+|..+..++
T Consensus 1 mpLiIlTG-yP---gsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 1 MPLIILTG-YP---GSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred CceEEEec-CC---CCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 44555554 23 36778889999999999999999887643
No 332
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=57.58 E-value=37 Score=33.53 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=26.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
+.|||++. ||.+..-..|++.|.++|++|+.+..
T Consensus 14 ~~~~vlVt---------GatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 14 APKRWLIT---------GVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cCCEEEEE---------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 34787555 56667778899999999999988864
No 333
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=57.52 E-value=1.9e+02 Score=27.97 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+...|+++.... ...-.......+-+++.+.|+++.+......... ...+
T Consensus 60 ~~~~Igvv~~~~---~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~---------------------------~~~~ 109 (328)
T PRK11303 60 RTRSIGLIIPDL---ENTSYARIAKYLERQARQRGYQLLIACSDDQPDN---------------------------EMRC 109 (328)
T ss_pred CCceEEEEeCCC---CCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHH---------------------------HHHH
Confidence 445788886431 1122344566777888889999988754321100 0133
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
.+.+...++|-|++..........+......++|+|+.-
T Consensus 110 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~ 148 (328)
T PRK11303 110 AEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIALD 148 (328)
T ss_pred HHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEEEC
Confidence 344455689988775321111111222345689988753
No 334
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=57.38 E-value=98 Score=29.42 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=68.0
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCC-cEEEEEeCCccHHHHHH-Hhc--CCCeEEecccChhh-HHHHHHc-CcEEEe
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPE-ARIAFIGDGPYREELEK-MFT--GMPAVFTGMLLGEE-LSQAYAS-GDVFVM 397 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~-~~l~ivG~g~~~~~l~~-l~~--~~~V~~~g~v~~~~-l~~~~~~-aDv~v~ 397 (526)
+.+++++.=.+.+.++.+++.++.-|+ +.+=..|.|........ +.+ ..++.+.++-...+ +..++.. .|+.+.
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak~~p~~~~~g~~g~g~~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG~vd~~~~ 158 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAKANPGKLTFGSSGPGSSDHLAAALLAKAAGIKFTHVPYDGGAEALTALLGGHVDAAFG 158 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHHCSCCC-EEEESSTTSHHHHHHHHHHHHHT---EEEE-SSHHHHHHHHHTTSSSEEEE
T ss_pred ceEEEEeCCCccccHHHHHHHHHhCCCCeEEEecCCCchHHHHHHHHHHHhCCceEEEEeCCccHHHHHHhCCeeeEEee
Confidence 456777777888999999999988764 55555554443322222 222 22455555543333 3344332 365552
Q ss_pred cCCCCCCcHHHHHHHHcCCcE-EEe-C---CCCCCceeccc--------CCCceeEeeCCCCHHHHH----HHHHHhhhC
Q 009759 398 PSESETLGLVVLEAMSSGIPV-VGV-R---AGGIPDIIPED--------QDGKIGYLFNPGDLDDCL----SKLEPLLYN 460 (526)
Q Consensus 398 ps~~e~~~~~ilEAma~G~Pv-I~~-~---~gg~~e~v~~~--------~~~~~g~~~~~~d~~~la----~ai~~ll~d 460 (526)
. .......+..|.-- |+. . ...++++-+-. -....|++++.+.+++.. +++.+.++|
T Consensus 159 ~------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~~ 232 (274)
T PF03401_consen 159 S------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDEIVDKLADAIKKALED 232 (274)
T ss_dssp E------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HHHHHHHHHHHHHHHT-
T ss_pred c------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHHHHHHHHHHHHHHhCC
Confidence 2 23445555566422 222 1 11222211000 123457778887776655 555555668
Q ss_pred HHHHHHHHHHH
Q 009759 461 QELRETMGQAA 471 (526)
Q Consensus 461 ~~~~~~~~~~a 471 (526)
++..+.+.+.+
T Consensus 233 pe~~~~~~~~g 243 (274)
T PF03401_consen 233 PEFQEFLEKMG 243 (274)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
Confidence 87766655443
No 335
>PLN02884 6-phosphofructokinase
Probab=57.15 E-value=81 Score=31.96 Aligned_cols=114 Identities=10% Similarity=-0.008 Sum_probs=61.2
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC-eEEEEEeCCCCC--ccccCc-----eeccccccCCCcccccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD-EVMVVTTHEGVP--QEFYGA-----KLIGSRSFPCPWYQKVP 187 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~-~V~vi~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~ 187 (526)
+..|||++++..- .-.|....+..+++.+...|+ +|.-+..+.... ...... .+..+....-.......
T Consensus 51 p~~~rIaIltsGG---daPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR 127 (411)
T PLN02884 51 PEEVKAAIVTCGG---LCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSR 127 (411)
T ss_pred CcceEEEEEcCCC---CCccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCC
Confidence 4458999998763 335888889999999888887 676665443211 000000 01111111111111111
Q ss_pred chhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHH---hcC--CCEEE
Q 009759 188 LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK---LLC--VPIVM 233 (526)
Q Consensus 188 ~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~---~~~--~p~v~ 233 (526)
......++.+.+++++.|.+++-.-......+..+.+ ..+ +++|.
T Consensus 128 -~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIG 177 (411)
T PLN02884 128 -GGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVG 177 (411)
T ss_pred -CCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEe
Confidence 1113567888899999998888664333333333332 234 77665
No 336
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=57.05 E-value=42 Score=29.41 Aligned_cols=28 Identities=7% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM 150 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~ 150 (526)
+..+++++... ||+..-+.+|.+.|.++
T Consensus 37 ~s~~~lVvlGS------GGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 37 KSLSTLVVLGS------GGHTGEMLRLLEALQDL 64 (211)
T ss_pred CcceEEEEEcC------CCcHHHHHHHHHHHHhh
Confidence 44588888653 88888999999999877
No 337
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=56.97 E-value=1e+02 Score=33.92 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=64.3
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-----cccCceeccccccCCCccccccc-
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-----EFYGAKLIGSRSFPCPWYQKVPL- 188 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 188 (526)
..++|||++++..-| ..|....+..+++.....||+|.-+..+....- +.....+.......-........
T Consensus 386 ~~~~~~IaIltsGG~---apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~ 462 (762)
T cd00764 386 EKTNLNIAIVNVGAP---AAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTL 462 (762)
T ss_pred cccccEEEEEecCCC---chhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCC
Confidence 344589999987644 457778888898888888998888765542111 11000111100000000000000
Q ss_pred hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHH------hcCCCEEEEEe
Q 009759 189 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK------LLCVPIVMSYH 236 (526)
Q Consensus 189 ~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~------~~~~p~v~~~h 236 (526)
.......+.+.+++++.|.+++-.-.-....+..+.. ..++|+|..--
T Consensus 463 ~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPk 516 (762)
T cd00764 463 PKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPA 516 (762)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecc
Confidence 0124567788889999998887654333222333332 25788876433
No 338
>PRK00170 azoreductase; Reviewed
Probab=56.94 E-value=45 Score=29.81 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=27.7
Q ss_pred cEEEEEeccCCCCccCchHHH-HHHHHHHHHHC--CCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNR-FQNFIKYLREM--GDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~--G~~V~vi~~~~ 161 (526)
|||++|..+ | ...+|.... +..+++.|.+. |++|+++....
T Consensus 2 mkil~i~gS-p-r~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~ 45 (201)
T PRK00170 2 SKVLVIKSS-I-LGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAA 45 (201)
T ss_pred CeEEEEecC-C-CCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 799888663 3 222255544 55777888888 99999886543
No 339
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=56.53 E-value=46 Score=35.21 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.+.|++|.++..+.
T Consensus 87 GATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 87 GATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3334455667888999999999887543
No 340
>PRK12342 hypothetical protein; Provisional
Probab=56.48 E-value=67 Score=30.16 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=61.8
Q ss_pred ccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--c-c-----Cc-eeccccccCCCccccccchhcccHHHHHHHHh
Q 009759 132 YVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--F-Y-----GA-KLIGSRSFPCPWYQKVPLSLALSPRIISEVAR 202 (526)
Q Consensus 132 ~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 202 (526)
..+-...+..+.+-.|++.|.+|++++.++..... . . |. +.+.+..-. +.. ...+.....+...+++
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~---~~g-~D~~ata~~La~~i~~ 107 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQ---LEH-ALPLDTAKALAAAIEK 107 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCc---cCC-CCHHHHHHHHHHHHHH
Confidence 34555678888999999889999999987753111 1 1 00 111111000 000 1223445677788888
Q ss_pred cCCCEEEECCC---chHHHHHHHHHHhcCCCEEEEEec
Q 009759 203 FKPDIIHASSP---GIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 203 ~~pDiV~~~~~---~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
..||+|++... .........++..++.|.+..+..
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 88999999643 222333556788899998877655
No 341
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=56.48 E-value=94 Score=36.09 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=46.5
Q ss_pred CCcEEEEEeccCCCCccC---chHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 117 RPRRIALFVEPSPFSYVS---GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~g---G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
..+|||++... | ...| -......+++++|++.|++|.++..++....... ......+..+ ...
T Consensus 6 ~~~kvlviG~G-~-~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~---~~ad~~y~ep---------~~~ 71 (1068)
T PRK12815 6 DIQKILVIGSG-P-IVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDP---APADTVYFEP---------LTV 71 (1068)
T ss_pred CCCEEEEECCC-c-chhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCc---ccCCeeEECC---------CCH
Confidence 34689888653 1 1111 1123457899999999999999986653111000 0000001011 123
Q ss_pred HHHHHHHHhcCCCEEEEC
Q 009759 194 PRIISEVARFKPDIIHAS 211 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~ 211 (526)
..+.+++++++||.|+..
T Consensus 72 e~l~~ii~~e~~D~Iip~ 89 (1068)
T PRK12815 72 EFVKRIIAREKPDALLAT 89 (1068)
T ss_pred HHHHHHHHHhCcCEEEEC
Confidence 567788899999999974
No 342
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=56.26 E-value=57 Score=32.62 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
.....+++++.++|++|.++..+............ +..+ ..-...+.++++++++|+|+....
T Consensus 9 ~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~-----~~~~--------~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 9 ELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRS-----YVIN--------MLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceE-----EEcC--------CCCHHHHHHHHHHhCCCEEEeccC
Confidence 34567788899999999999876533221111010 0011 011246777888889999987543
No 343
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=56.06 E-value=55 Score=33.36 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=45.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
||||++.. || +...+++.|.+. |+.+.++.+.+....... + .+. ........+.
T Consensus 1 ~kvliiG~-------G~---~~~~l~~~l~~~~~~~~i~~~~~n~g~~~~~--~-----~~~--------~~~~d~~~l~ 55 (420)
T PRK00885 1 MKVLVIGS-------GG---REHALAWKLAQSPLVEKVYVAPGNAGTALLA--E-----NVV--------IDVTDIEALV 55 (420)
T ss_pred CEEEEECC-------CH---HHHHHHHHHHhCCCCCEEEEeCCCHHHHhhc--c-----ccC--------CCCCCHHHHH
Confidence 79988843 22 234588888886 444444443322111100 0 000 1112345778
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+++++.++|+|+............-.....++|++
T Consensus 56 ~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~~~ 90 (420)
T PRK00885 56 AFAKEEGIDLTVVGPEAPLVAGIVDAFRAAGLPIF 90 (420)
T ss_pred HHHHHhCCCEEEECCchHHHHHHHHHHHHCCCcEE
Confidence 88889999999875432221111112344577654
No 344
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=55.81 E-value=19 Score=36.97 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
+.+.|||++. ||.+..-..|++.|.++||+|.++..
T Consensus 117 ~~~~mkILVT---------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVVT---------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEEE---------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 4556998666 66667788999999999999998764
No 345
>COG1647 Esterase/lipase [General function prediction only]
Probab=55.79 E-value=91 Score=28.47 Aligned_cols=91 Identities=14% Similarity=-0.037 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC-CCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE-GVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASS 212 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~ 212 (526)
.|...-+..|+++|++.|+.|..=.... +...+. . .......++.......+.+++..+|=|.+.+
T Consensus 25 TGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~---------f----l~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~G 91 (243)
T COG1647 25 TGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPED---------F----LKTTPRDWWEDVEDGYRDLKEAGYDEIAVVG 91 (243)
T ss_pred CCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHH---------H----hcCCHHHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 5777889999999999999887532211 100000 0 0011122233445666677767888777777
Q ss_pred CchHHHHHHHHHHhcCCCEEEEEec
Q 009759 213 PGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 213 ~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
....+..++.++.....+-|+.+-.
T Consensus 92 lSmGGv~alkla~~~p~K~iv~m~a 116 (243)
T COG1647 92 LSMGGVFALKLAYHYPPKKIVPMCA 116 (243)
T ss_pred ecchhHHHHHHHhhCCccceeeecC
Confidence 6666666777777777776665554
No 346
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=55.41 E-value=1e+02 Score=30.01 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=60.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--cccC---ceeccccccCCCcccccc---c-h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--EFYG---AKLIGSRSFPCPWYQKVP---L-S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~---~-~ 189 (526)
|||++++..-| ..|....+..+++...+.|++|.-+..+....- .... ..+......+-....... + .
T Consensus 1 ~~IaIltsGG~---apGmNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGD---APGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCC---cHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCC
Confidence 58999987533 357788889999999889998777765432110 0000 000010000000000000 0 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
.....++.+.+++++.|.+++-.-......+..+.+ .++|+|..
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e-~~i~vigi 121 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTE-HGFPCVGL 121 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHH-cCCCEEEe
Confidence 123456778888999998888664333333333333 47888753
No 347
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=54.86 E-value=37 Score=35.12 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=55.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHH-HCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLR-EMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~-~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.+|++++... .....+++.|. +.|.+|..+.........+..... ..+. ......-.....+
T Consensus 325 GkrvaI~~~~----------~~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~----~~~~---~~~~i~d~~~~e~ 387 (457)
T TIGR01284 325 GKKVWVWSGG----------PKLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIA----RVRE---GTVIIDDPNELEL 387 (457)
T ss_pred CCEEEEECCC----------cHHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHH----hcCC---CeEEEeCCCHHHH
Confidence 4588776431 46789999997 799999887664432221111000 0000 0000011123366
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
.+.+++.+||+++.+... ..++++.++|++-.
T Consensus 388 ~~~i~~~~pDllig~~~~------~~~a~k~gip~~~~ 419 (457)
T TIGR01284 388 EEIIEKYKPDIILTGIRE------GELAKKLGVPYINI 419 (457)
T ss_pred HHHHHhcCCCEEEecCCc------chhhhhcCCCEEEc
Confidence 777888899999998753 23567889998653
No 348
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=54.79 E-value=1.2e+02 Score=29.42 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=61.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC--ccccCc---eeccccccCCCcccccc---c-hh
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP--QEFYGA---KLIGSRSFPCPWYQKVP---L-SL 190 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~---~-~~ 190 (526)
||++++..-+ ..|....+..+.+...+.|++|.-+..+.... ..+... .+.......-....... + ..
T Consensus 1 rIaIltsGG~---apG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGD---APGMNAAIRAVVRTAIYHGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCC---cHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCH
Confidence 5778876533 35777888899998888898777766543211 111000 01111100100010000 0 11
Q ss_pred cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 191 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
....++.+.+++++.|.+++-.-....-.+..+....++|+|..-
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiP 122 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLP 122 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeec
Confidence 234567888899999988887654443344455555788887633
No 349
>CHL00194 ycf39 Ycf39; Provisional
Probab=54.77 E-value=19 Score=35.03 Aligned_cols=34 Identities=6% Similarity=0.054 Sum_probs=26.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++. ||.+..-..+++.|.++||+|.+++.+.
T Consensus 1 MkIlVt---------GatG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 1 MSLLVI---------GATGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred CEEEEE---------CCCcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 677665 5556677789999999999999998653
No 350
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=54.60 E-value=21 Score=30.66 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=25.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
.+||+++ |++......++.|.+.|++|+|+.+
T Consensus 13 ~~~vlVv----------GGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVII----------GGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEE----------CCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 3578777 3346678899999999999999954
No 351
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=54.60 E-value=50 Score=29.34 Aligned_cols=107 Identities=14% Similarity=0.281 Sum_probs=55.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||+++.+ |.+.-+..++++...-. .+|..+..+.....-.......+++.+.+. .........+-..+
T Consensus 1 ~ki~VlaS--------G~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~-~k~~~~r~~~d~~l 71 (200)
T COG0299 1 KKIAVLAS--------GNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLD-RKEFPSREAFDRAL 71 (200)
T ss_pred CeEEEEEe--------CCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEec-cccCCCHHHHHHHH
Confidence 57888865 33455788888887432 466666555432222111122222221111 11122233455688
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.+.+++.+||+|.+-++.- .+...++.+..+ + |+-+|-
T Consensus 72 ~~~l~~~~~dlvvLAGyMr-IL~~~fl~~~~g-r-IlNIHP 109 (200)
T COG0299 72 VEALDEYGPDLVVLAGYMR-ILGPEFLSRFEG-R-ILNIHP 109 (200)
T ss_pred HHHHHhcCCCEEEEcchHH-HcCHHHHHHhhc-c-eEecCc
Confidence 8999999999999987521 222333444444 3 444554
No 352
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=54.55 E-value=34 Score=29.90 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=32.0
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchH-HHHHHHHHHhcCCCEEEEEecCCcc
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPV 241 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~ 241 (526)
....+.+.+++.+||+|++.-...- -..........+.++++.+-+.+..
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG~~~d~ 139 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVGGAFDF 139 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECchhhh
Confidence 3457888899999999999653221 1223344566677777766655443
No 353
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=54.38 E-value=1.2e+02 Score=24.75 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=49.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCce---eccccccCCCccccccchhcccH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAK---LIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
|||+++. ..++.-..+++.+.+ .|+++.-......... .+.. ..+...... ....
T Consensus 1 mrV~i~G---------~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~--~g~d~g~~~~~~~~~~----------~v~~ 59 (124)
T PF01113_consen 1 MRVGIVG---------ASGRMGRAIAEAILESPGFELVGAVDRKPSAK--VGKDVGELAGIGPLGV----------PVTD 59 (124)
T ss_dssp EEEEEET---------TTSHHHHHHHHHHHHSTTEEEEEEEETTTSTT--TTSBCHHHCTSST-SS----------BEBS
T ss_pred CEEEEEC---------CCCHHHHHHHHHHHhcCCcEEEEEEecCCccc--ccchhhhhhCcCCccc----------ccch
Confidence 6787762 224666778888888 6788777665543111 1111 111111111 1123
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
.+...+.+ +|+++-.+........+..+...++|+|...-++
T Consensus 60 ~l~~~~~~--~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 60 DLEELLEE--ADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -HHHHTTH---SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred hHHHhccc--CCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 45555554 8988776644444444555566699998866553
No 354
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.36 E-value=88 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=27.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
|||+++.+. ...........+++.|.++|++|.+..
T Consensus 1 m~v~iv~~~----~k~~~~~~~~~I~~~L~~~g~~v~v~~ 36 (277)
T PRK03708 1 MRFGIVARR----DKEEALKLAYRVYDFLKVSGYEVVVDS 36 (277)
T ss_pred CEEEEEecC----CCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 899999762 334555667888889999999999864
No 355
>PLN02527 aspartate carbamoyltransferase
Probab=54.23 E-value=2.1e+02 Score=27.68 Aligned_cols=133 Identities=14% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHHhhcCcEEEeCC--hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH---HHHHhhcCCCCCCcEEEEEec
Q 009759 257 LVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLIVHVGR 331 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S--~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~vG~ 331 (526)
-..+.+-+++|.|++=. ....+.+.++. .+-|| |+-+-...+|...-. .+++.++ .-+...|+++|-
T Consensus 88 Dta~vls~y~D~iviR~~~~~~~~~~a~~~-----~vPVI-Na~~g~~~HPtQ~LaDl~Ti~e~~g--~l~g~kva~vGD 159 (306)
T PLN02527 88 DTIRTVEGYSDIIVLRHFESGAARRAAATA-----EIPVI-NAGDGPGQHPTQALLDVYTIQREIG--RLDGIKVGLVGD 159 (306)
T ss_pred HHHHHHHHhCcEEEEECCChhHHHHHHHhC-----CCCEE-ECCCCCCCChHHHHHHHHHHHHHhC--CcCCCEEEEECC
Confidence 34556667799888743 44444554432 34444 555544456643221 2223332 345688999997
Q ss_pred ccccccHHHHHHHHHhCCCcEEEEEeCCc--cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC
Q 009759 332 LGVEKSLDFLKRVMDRLPEARIAFIGDGP--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 332 l~~~Kg~~~li~a~~~l~~~~l~ivG~g~--~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
....+-..-++.++..+.++.+.+++... ..+++.+.+++.+..+.- . +++.+.++.||++.....
T Consensus 160 ~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~-~--~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 160 LANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEE-S--SDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEE-E--cCHHHHhCCCCEEEECCc
Confidence 65445577888888887789999999533 223444444333333221 1 578899999999887543
No 356
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=54.15 E-value=1.2e+02 Score=32.21 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=54.2
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+..||+++++.. ..|. .....|.+.|.+.|.+|.++.+..- .+.++. ....
T Consensus 53 ~~~~I~I~gh~D----~DGi-~S~~~L~~~L~~~g~~v~~~ip~r~--~~~yg~----------------------~~~~ 103 (539)
T TIGR00644 53 NNEKILIFGDYD----VDGI-TSTAILVEFLKDLGVNVDYYIPNRI--TEGYGL----------------------SPEA 103 (539)
T ss_pred cCCeEEEEEccC----CCcH-HHHHHHHHHHHHCCCceEEEeCCCC--cccCCC----------------------CHHH
Confidence 345999998853 3553 4457788889999999988765321 000110 0011
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.+.+....+|++++.+...........++..++.+|+.-|.
T Consensus 104 i~~~~~~~~~LiI~vD~G~~~~~~~~~~~~~g~~vIviDHH 144 (539)
T TIGR00644 104 LREAIENGVSLIITVDNGISAHEEIDYAKELGIDVIVTDHH 144 (539)
T ss_pred HHHHHhcCCCEEEEeCCCcccHHHHHHHHhcCCCEEEECCC
Confidence 11222246899988776555444444455568888877664
No 357
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=54.11 E-value=51 Score=28.95 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=29.5
Q ss_pred hhHHHHHHcCcEEEe--cCCC---CCCcHHHHHHHHcCCcEEEeCCC
Q 009759 383 EELSQAYASGDVFVM--PSES---ETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~--ps~~---e~~~~~ilEAma~G~PvI~~~~g 424 (526)
.++.++++.||++++ |... .-++-..++.|--|.-+|-+.-|
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 478889999999886 4433 34567888888888877765544
No 358
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=53.94 E-value=35 Score=32.32 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=31.6
Q ss_pred hHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 384 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 384 ~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
++.++...+|++|-.+..+...-.+..|+.+|+|+|+...|.
T Consensus 61 d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 61 DLEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 343443568999988876666678899999999999866553
No 359
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=53.42 E-value=36 Score=32.81 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=21.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
||||+. ||.+..-..+++.|.++| +|..+.
T Consensus 1 m~iLVt---------G~~GfiGs~l~~~L~~~g-~V~~~~ 30 (299)
T PRK09987 1 MNILLF---------GKTGQVGWELQRALAPLG-NLIALD 30 (299)
T ss_pred CeEEEE---------CCCCHHHHHHHHHhhccC-CEEEec
Confidence 677665 555566678899999999 665553
No 360
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=53.42 E-value=32 Score=25.35 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|++....+++..|.+.|.+|+++...+.
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 3446778999999999999999987654
No 361
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=53.23 E-value=69 Score=29.99 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECC---C
Q 009759 137 KNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASS---P 213 (526)
Q Consensus 137 ~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~---~ 213 (526)
..-..-|++.|.++|++|.-.+.-.+.... ....+....+ ++|+|++.+ |
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~-------------------------I~~~l~~a~~--r~D~vI~tGGLGP 72 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDR-------------------------IVEALREASE--RADVVITTGGLGP 72 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHH-------------------------HHHHHHHHHh--CCCEEEECCCcCC
Confidence 345788999999999999888764432211 1112333333 499999975 3
Q ss_pred chHHHHHHHHHHhcCCCEEEE
Q 009759 214 GIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 214 ~~~~~~~~~~~~~~~~p~v~~ 234 (526)
....+-...+++..+.+++.+
T Consensus 73 T~DDiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 73 THDDLTAEAVAKALGRPLVLD 93 (255)
T ss_pred CccHhHHHHHHHHhCCCcccC
Confidence 333445566788899998863
No 362
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=52.61 E-value=1e+02 Score=30.21 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=32.1
Q ss_pred cHHHHHHHHhcCCCEEEECCC---chHHHH----HHHHHHhcCCCEEEEEecCCc
Q 009759 193 SPRIISEVARFKPDIIHASSP---GIMVFG----ALIIAKLLCVPIVMSYHTHVP 240 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~---~~~~~~----~~~~~~~~~~p~v~~~h~~~~ 240 (526)
...+...+++.+||++++.-. .-.+.. +......+++|+|..++...+
T Consensus 69 ~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~ENp 123 (349)
T PF07355_consen 69 LKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEENP 123 (349)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccCh
Confidence 357889999999999999532 111221 222456789999987776443
No 363
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=52.53 E-value=71 Score=26.81 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=22.8
Q ss_pred CccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 131 SYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 131 ~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+...|=...+..|++.|.++|+.|.++-..
T Consensus 8 ~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 456788899999999999999999966543
No 364
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.24 E-value=1.2e+02 Score=24.47 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchHH-
Q 009759 139 RFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMV- 217 (526)
Q Consensus 139 ~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~- 217 (526)
+....++.|+++|++|...--+..... .+.....--.+... ..+.+ ..|+|+.-.+..-.
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~~~~a~--~g~~~v~DDitnP~------------~~iY~-----~A~lIYSiRpppEl~ 84 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDINEKTAP--EGLRFVVDDITNPN------------ISIYE-----GADLIYSIRPPPELQ 84 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecccccCc--ccceEEEccCCCcc------------HHHhh-----CccceeecCCCHHHH
Confidence 457899999999999988765443221 22221111111000 01111 77999998865443
Q ss_pred HHHHHHHHhcCCCEEEEEec
Q 009759 218 FGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 218 ~~~~~~~~~~~~p~v~~~h~ 237 (526)
-..+-.++..|+++++.--.
T Consensus 85 ~~ildva~aVga~l~I~pL~ 104 (129)
T COG1255 85 SAILDVAKAVGAPLYIKPLT 104 (129)
T ss_pred HHHHHHHHhhCCCEEEEecC
Confidence 33455778889998765443
No 365
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=52.22 E-value=27 Score=30.88 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=27.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|+||+|.+.. ..+++|+++|.+.|++|+|+-.+
T Consensus 2 ~~IL~IDNyD---------SFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 2 MMILLIDNYD---------SFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred ceEEEEECcc---------chHHHHHHHHHHcCCceEEEECC
Confidence 7898987742 57899999999999999998654
No 366
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=52.21 E-value=1.2e+02 Score=33.57 Aligned_cols=120 Identities=13% Similarity=0.022 Sum_probs=65.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--cccCc---eeccccccCCCccccccch
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--EFYGA---KLIGSRSFPCPWYQKVPLS 189 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~ 189 (526)
..++|||++++..-| ..|....+..+.+.....|++|.-+..+....- ..... .+.......-.........
T Consensus 386 ~~~~~rIaIltsGG~---apGmNaair~vv~~a~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~ 462 (745)
T TIGR02478 386 KASRLRIAIIHVGAP---AGGMNAATRSAVRYAIARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGTNREL 462 (745)
T ss_pred CCCceEEEEEecCCC---chhHHHHHHHHHHHHHhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccccCCCC
Confidence 455689999988644 357778888888888888998887765543111 01000 0000000000000000000
Q ss_pred -hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHH------hcCCCEEEEEec
Q 009759 190 -LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK------LLCVPIVMSYHT 237 (526)
Q Consensus 190 -~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~------~~~~p~v~~~h~ 237 (526)
......+.+.+++++.|.+++-.-......+..+.+ ..++|+|..-..
T Consensus 463 ~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkT 517 (745)
T TIGR02478 463 PGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPAT 517 (745)
T ss_pred chhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEeccc
Confidence 123457788889999998888664333333333332 246888764443
No 367
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=52.14 E-value=1.1e+02 Score=35.59 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCcEEEEEeccCCCCccC-c--hHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 117 RPRRIALFVEPSPFSYVS-G--YKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~g-G--~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
...|||++... | ...| + ......+++++|++.|++|.++..+......... . .-..+..+. ..
T Consensus 5 ~~~kvlviG~g-~-~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~--~-aD~~y~~p~---------~~ 70 (1050)
T TIGR01369 5 DIKKILVIGSG-P-IVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPE--M-ADKVYIEPL---------TP 70 (1050)
T ss_pred CCcEEEEECCC-c-chhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChh--c-CCEEEECCC---------CH
Confidence 34689888553 2 1111 1 1233568999999999999999876532110000 0 000011111 12
Q ss_pred HHHHHHHHhcCCCEEEECC
Q 009759 194 PRIISEVARFKPDIIHASS 212 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~ 212 (526)
..+.+++++.++|.|+...
T Consensus 71 ~~v~~ii~~e~~DaIlp~~ 89 (1050)
T TIGR01369 71 EAVEKIIEKERPDAILPTF 89 (1050)
T ss_pred HHHHHHHHHhCCCEEEECC
Confidence 4677888889999999753
No 368
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=51.93 E-value=28 Score=31.15 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=28.5
Q ss_pred cEEEEEeccCCCCccCch-HHHHHHHHHHHHHCC-CeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGY-KNRFQNFIKYLREMG-DEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~-~~~~~~l~~~L~~~G-~~V~vi~~~~ 161 (526)
||||+|..+ |-+. ++. ......+++.+.+.| ++|.++-...
T Consensus 1 mkiLvI~as-p~~~-~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~ 43 (199)
T PF02525_consen 1 MKILVINAS-PRPE-GSFSRALADAFLEGLQEAGPHEVEIRDLYE 43 (199)
T ss_dssp EEEEEEE---SSTT-TSHHHHHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred CEEEEEEcC-CCCc-cCHHHHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 899999764 3222 344 445688999999999 9999886543
No 369
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=51.88 E-value=86 Score=30.06 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=65.2
Q ss_pred HhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCC-CCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHH
Q 009759 262 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF 340 (526)
Q Consensus 262 ~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngi-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~ 340 (526)
.-...|.|++........+.+... +.+-++..|+ |+......... ..+++.+-+..- ..-+..
T Consensus 56 ~~~~~DlIi~~gt~aa~~~~~~~~---~~iPVVf~~V~dp~~~~l~~~~---------~~~~~nvTGv~~----~~~~~~ 119 (294)
T PF04392_consen 56 KAQKPDLIIAIGTPAAQALAKHLK---DDIPVVFCGVSDPVGAGLVDSL---------DRPGKNVTGVSE----RPPIEK 119 (294)
T ss_dssp CCTS-SEEEEESHHHHHHHHHH-S---S-S-EEEECES-TTTTTS-S-S---------SS--SSEEEEEE-------HHH
T ss_pred hcCCCCEEEEeCcHHHHHHHHhcC---CCcEEEEEeccChhhhhccccc---------cCCCCCEEEEEC----CcCHHH
Confidence 345789999998777777776653 1155666677 33221111000 111222223332 233444
Q ss_pred HHHHHHhC-CCc-EE-EEEeCCc-----cHHHHHHHhcCCCeEEe--cccChhhHHHHH----HcCcEEEecCC---CCC
Q 009759 341 LKRVMDRL-PEA-RI-AFIGDGP-----YREELEKMFTGMPAVFT--GMLLGEELSQAY----ASGDVFVMPSE---SET 403 (526)
Q Consensus 341 li~a~~~l-~~~-~l-~ivG~g~-----~~~~l~~l~~~~~V~~~--g~v~~~~l~~~~----~~aDv~v~ps~---~e~ 403 (526)
-++.++++ |++ ++ +++.+.. ..+.+++.+++.++.+. .--+.+++...+ ...|+++++.. .+.
T Consensus 120 ~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~ 199 (294)
T PF04392_consen 120 QLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSN 199 (294)
T ss_dssp HHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHT
T ss_pred HHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhH
Confidence 44444443 543 34 3444332 23455555555565443 222334554443 45688887754 233
Q ss_pred CcHHHHHHHHcCCcEEEeC
Q 009759 404 LGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 404 ~~~~ilEAma~G~PvI~~~ 422 (526)
+...+..+..+++||++..
T Consensus 200 ~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 200 FEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHHhcCCCEEECC
Confidence 4445556677899999875
No 370
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=51.87 E-value=75 Score=32.02 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchHH
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMV 217 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~ 217 (526)
.....+++.|.+.|.+|..+................ ... ............+.+.+++.+||+++.....
T Consensus 289 ~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~d~~~~~~~~~~~~pdl~ig~~~~--- 358 (399)
T cd00316 289 DLLLALARFLLELGMEVVAAGTTFGHKADYERREEL--LGE-----GTEVVDDGDLEELEELIRELKPDLIIGGSKG--- 358 (399)
T ss_pred cHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHh--cCC-----CCEEEeCCCHHHHHHHHhhcCCCEEEECCcH---
Confidence 466777899999999988887654433221110000 000 0000111233577778888899999998742
Q ss_pred HHHHHHHHhcCCCEEEEE
Q 009759 218 FGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 218 ~~~~~~~~~~~~p~v~~~ 235 (526)
...++..++|.+...
T Consensus 359 ---~~~~~~~~ip~~~~~ 373 (399)
T cd00316 359 ---RYIAKKLGIPLVRIG 373 (399)
T ss_pred ---HHHHHHhCCCEEEcC
Confidence 234556789986433
No 371
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=51.81 E-value=1.1e+02 Score=31.35 Aligned_cols=104 Identities=23% Similarity=0.200 Sum_probs=54.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEEeCCCCCccccC---ceeccccccCCCccccccchhcc
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVTTHEGVPQEFYG---AKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..+|++++... .....+++.|.+.| -+|..+............ .....-...+.....++......
T Consensus 292 ~Gk~~~i~~~~----------~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (426)
T cd01972 292 KGKKAIVETGA----------AYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTVSNGQ 361 (426)
T ss_pred CCCEEEEEeCC----------ccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeeecCCC
Confidence 34577666542 46788889999999 888877652111111000 00110000000000001111222
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
...+.+++++.+||+++.+...... ..+++.|+|++..
T Consensus 362 ~~e~~~~l~~~~pDl~i~~~~~~~~----~~~~~~gip~~~~ 399 (426)
T cd01972 362 YYQFYNLLKRVKPDFIIFRHGGLFP----DATVYLGIPVVPL 399 (426)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCccH----HHHHhcCCCEEec
Confidence 3578889999999999976543222 2235689998754
No 372
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=51.60 E-value=91 Score=28.24 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=42.6
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
||+++++ |.+.-+..+.+++.+.+ .+|.++..+..........+..+++.+....... ...-..-..+.
T Consensus 1 ki~vl~S--------g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~-~~~~~~~~~~~ 71 (207)
T PLN02331 1 KLAVFVS--------GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKG-EPDGLSPDELV 71 (207)
T ss_pred CEEEEEe--------CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccC-CCcccchHHHH
Confidence 4666654 33455677888887764 4555555543322111111111222221111100 00011224677
Q ss_pred HHHHhcCCCEEEECCCc
Q 009759 198 SEVARFKPDIIHASSPG 214 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~ 214 (526)
+.++++++|++++..+.
T Consensus 72 ~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 72 DALRGAGVDFVLLAGYL 88 (207)
T ss_pred HHHHhcCCCEEEEeCcc
Confidence 88899999999997753
No 373
>PRK07206 hypothetical protein; Provisional
Probab=51.52 E-value=1.1e+02 Score=30.98 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCeEEEEEeCCCCCccc-cCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchHHHH
Q 009759 141 QNFIKYLREMGDEVMVVTTHEGVPQEF-YGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFG 219 (526)
Q Consensus 141 ~~l~~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~ 219 (526)
..+++++++.|+++.+++........+ ........ ..... ......+.+.+++.++|.|+..........
T Consensus 15 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~-~~~i~--------~~~~~~l~~~~~~~~~d~vi~~~e~~~~~~ 85 (416)
T PRK07206 15 KFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDF-IEVII--------NGDIDDLVEFLRKLGPEAIIAGAESGVELA 85 (416)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccc-hhhhc--------CCCHHHHHHHHHHcCCCEEEECCCccHHHH
Confidence 468899999999999998664322110 00000000 00000 022347778888999999998654333332
Q ss_pred HHHHHHhcCCC
Q 009759 220 ALIIAKLLCVP 230 (526)
Q Consensus 220 ~~~~~~~~~~p 230 (526)
..++...+.|
T Consensus 86 -a~l~~~l~l~ 95 (416)
T PRK07206 86 -DRLAEILTPQ 95 (416)
T ss_pred -HHHHHhcCCC
Confidence 2234445555
No 374
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=51.46 E-value=34 Score=30.72 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=30.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||++.|+.. -...|-.....+|+.+|++.|++|.++-.+.
T Consensus 17 ~kvI~v~s~---kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSV---KPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecC---CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 788777653 2234566778999999999999999987654
No 375
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=51.46 E-value=85 Score=30.36 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=29.5
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||+++..... +...-.-.....++++|.+.||+|.++....
T Consensus 1 ~~~~~~gg~s-~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~ 41 (315)
T TIGR01205 1 RVAVLFGGKS-AEHEISLVSAAAVLKALRDLGYDVYPVDIDK 41 (315)
T ss_pred CEEEEeCCCC-CCeeeeHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 5677765422 3333345678899999999999999997654
No 376
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=51.25 E-value=2.9e+02 Score=28.26 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=79.4
Q ss_pred HHHHHHhhcCcEEEeCC--hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH---HHHHhhcC-C-CCCCcEEEEE
Q 009759 257 LVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMRWRLSN-G-EPDKPLIVHV 329 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S--~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~---~~~~~~~~-~-~~~~~~i~~v 329 (526)
-..+.+-+++|.|++=. ....+.+.+.. .+-|| |+-|.+..+|...-. .+.+.++. + .-+...|+++
T Consensus 174 DTarvLs~y~D~IviR~~~~~~~~e~A~~s-----~vPVI-NAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~v 247 (429)
T PRK11891 174 DTSRVMSGYVDALVIRHPEQGSVAEFARAT-----NLPVI-NGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALV 247 (429)
T ss_pred HHHHHHHHhCCEEEEeCCchhHHHHHHHhC-----CCCEE-ECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEE
Confidence 44556667799988744 33445554432 33344 566655566653222 22233321 1 1346789999
Q ss_pred ecccccccHHHHHHHHHhCCCcEEEEEeCCcc--HHHHHHHhcCCC--eEEecccChhhHHHHHHcCcEEEecCC
Q 009759 330 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 330 G~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~--~~~l~~l~~~~~--V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
|-+...+-..-++.++..+.++++++++...+ .+++.+.+++.+ |.+ .+++.+.+..|||+...+.
T Consensus 248 GD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~-----~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 248 GDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ-----TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEE-----EcCHHHHhCCCCEEEEcCc
Confidence 98755666788888877777899999995332 233333333322 332 1578899999999987553
No 377
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=51.20 E-value=82 Score=30.79 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=57.7
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCCc-EEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEA-RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 400 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~~-~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~ 400 (526)
..++.+|.- .-+-...+.++...++. .++-+.+ ...+..+...++.++. ...+++.++++. .|++++.+.
T Consensus 4 irvgiiG~G--~~~~~~~~~~~~~~~~~~~~vav~d-~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp 76 (342)
T COG0673 4 IRVGIIGAG--GIAGKAHLPALAALGGGLELVAVVD-RDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATP 76 (342)
T ss_pred eEEEEEccc--HHHHHHhHHHHHhCCCceEEEEEec-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCC
Confidence 456777742 11223456667777663 4444433 4455567777766665 223567777876 488888877
Q ss_pred CCCCcHHHHHHHHcCCcEEEe
Q 009759 401 SETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~ 421 (526)
.....-.++.|+.+|++|++=
T Consensus 77 ~~~H~e~~~~AL~aGkhVl~E 97 (342)
T COG0673 77 NALHAELALAALEAGKHVLCE 97 (342)
T ss_pred ChhhHHHHHHHHhcCCEEEEc
Confidence 655555669999999999875
No 378
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=51.03 E-value=1.1e+02 Score=31.67 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCcccc--CceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEEC
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHEGVPQEFY--GAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHAS 211 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~ 211 (526)
.....++++++++|+++.++....+...... ..+.+.+..-+ ...+.-...+.+++++.++|.||..
T Consensus 12 eia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~-------~~~y~d~~~i~~~a~~~~~D~I~pg 80 (472)
T PRK07178 12 EIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADP-------LAGYLNPRRLVNLAVETGCDALHPG 80 (472)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCc-------hhhhcCHHHHHHHHHHHCCCEEEeC
Confidence 4567899999999999999987654321110 11111111000 0111223478888888999999974
No 379
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=50.59 E-value=1.2e+02 Score=28.41 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=48.5
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+++....-+....-....+..+-+.+++.|+++.+....+. .. .....+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~~~~~--~~--------------------------~~~~i~~ 52 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVESKSD--AD--------------------------YEPNLEQ 52 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEecCCH--HH--------------------------HHHHHHH
Confidence 5777764210112234556677888999999999998744311 00 0133444
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
+...++|.|++............+.+..++|+|+.-
T Consensus 53 l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~PiV~i~ 88 (265)
T cd06354 53 LADAGYDLIVGVGFLLADALKEVAKQYPDQKFAIID 88 (265)
T ss_pred HHhCCCCEEEEcCcchHHHHHHHHHHCCCCEEEEEe
Confidence 566799999886533222111122222378988753
No 380
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.35 E-value=1.5e+02 Score=28.08 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=35.8
Q ss_pred CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 373 PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 373 ~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
.|..++++++++..+++..||+-++-. | -+.+-|..+|+|.+=.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~VRG--E---DSFVRAq~agkPflWH 282 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLVRG--E---DSFVRAQLAGKPFLWH 282 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccceeec--c---hHHHHHHHcCCCcEEE
Confidence 477899999999999999999977532 1 3577899999998854
No 381
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=50.31 E-value=1.3e+02 Score=24.16 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=42.1
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
+|+++... ...+ .....+.+.|.+.|++|..+.+..+ ++.+...++.- .+
T Consensus 2 siAVvGaS---~~~~---~~g~~v~~~l~~~G~~v~~Vnp~~~--------~i~G~~~y~sl---------------~e- 51 (116)
T PF13380_consen 2 SIAVVGAS---DNPG---KFGYRVLRNLKAAGYEVYPVNPKGG--------EILGIKCYPSL---------------AE- 51 (116)
T ss_dssp EEEEET-----SSTT---SHHHHHHHHHHHTT-EEEEESTTCS--------EETTEE-BSSG---------------GG-
T ss_pred EEEEEccc---CCCC---ChHHHHHHHHHhCCCEEEEECCCce--------EECcEEeeccc---------------cC-
Confidence 67777432 1112 3456677788889999998876553 22222222110 00
Q ss_pred HHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 200 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
+ -..+|++.+..+.......+--+...|++.++..
T Consensus 52 ~-p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~ 86 (116)
T PF13380_consen 52 I-PEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQ 86 (116)
T ss_dssp C-SST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-
T ss_pred C-CCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEE
Confidence 0 1278988888765554444444555677776643
No 382
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=50.22 E-value=57 Score=37.04 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=56.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
..+|++++... .....+++.|.+.|.+|.................. ... . ......-.-...+
T Consensus 319 ~GKrv~i~~g~----------~~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~--~~~---~--~~~vi~~~d~~el 381 (917)
T PRK14477 319 EGKRVVLFTGG----------VKTWSMVNALRELGVEVLAAGTQNSTLEDFARMKA--LMH---K--DAHIIEDTSTAGL 381 (917)
T ss_pred cCCEEEEECCC----------chHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHH--hcC---C--CCEEEECCCHHHH
Confidence 34578776531 46788999999999999776544332221111100 000 0 0000111124577
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
.+.+++.+||+++.+... ..++++.++|++-..
T Consensus 382 ~~~i~~~~pDLlig~~~~------~~~a~k~giP~~~~~ 414 (917)
T PRK14477 382 LRVMREKMPDLIVAGGKT------KFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHhcCCCEEEecCch------hhHHHHcCCCeEEcc
Confidence 788888999999997642 345678999998543
No 383
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=50.15 E-value=57 Score=28.40 Aligned_cols=62 Identities=8% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHHHHhC----CCcEEEEEeCCcc-HHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEecCCC
Q 009759 339 DFLKRVMDRL----PEARIAFIGDGPY-REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSES 401 (526)
Q Consensus 339 ~~li~a~~~l----~~~~l~ivG~g~~-~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~ 401 (526)
...+++++++ .+-+++|+|.|.. ...+.+...+. +|.+...- .+++.+.+..||++|.....
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhhCCEEEEcCCC
Confidence 3445555544 5789999999874 44344444333 46555553 37899999999999987653
No 384
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.13 E-value=1.4e+02 Score=28.05 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=50.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
+|+++... ............+.+++.+.|+++.+......... ...+.+.
T Consensus 2 ~ig~i~~~---~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~---------------------------~~~~i~~ 51 (280)
T cd06315 2 NIIFVASD---LKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAG---------------------------QAAALNQ 51 (280)
T ss_pred eEEEEecc---cCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHH---------------------------HHHHHHH
Confidence 57777542 22334556778888999999999988754321000 0134445
Q ss_pred HHhcCCCEEEECCCchH-HHHHHHHHHhcCCCEEEE
Q 009759 200 VARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~-~~~~~~~~~~~~~p~v~~ 234 (526)
+...++|.|++...... ....+......++|+|+.
T Consensus 52 l~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 52 AIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 66679998888654222 112223345578999875
No 385
>PRK06756 flavodoxin; Provisional
Probab=50.12 E-value=34 Score=28.86 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=29.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||+++.. ...|..+..+..+++.|.+.|++|.++..
T Consensus 2 mkv~IiY~----S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFA----SMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEE----CCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 78888854 34577888899999999999999987754
No 386
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=50.12 E-value=41 Score=36.43 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=27.3
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
..++++|+||. ++..-..+|.+|++.|++|+|+=..
T Consensus 78 ~~~~~~VlIVG----------gGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 78 KKKKSRVLVAG----------GGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred ccCCCCEEEEC----------CCHHHHHHHHHHHhcCCeEEEEecc
Confidence 45567898883 2355578899999999999999643
No 387
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=50.08 E-value=44 Score=32.97 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
||.+..-..+++.|.+.||+|.++...
T Consensus 11 GatG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 11 GHTGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence 344445578999999999999887643
No 388
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=50.04 E-value=88 Score=30.89 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=56.8
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCC-CcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEE--ec
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV--MP 398 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~-~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v--~p 398 (526)
++..++.+|. .- | ...++++..++ +++++-+.+ ...+..++++++.++. .+ .++.+++...|+.+ .|
T Consensus 2 ~~~rVgViG~-~~--G-~~h~~al~~~~~~~eLvaV~d-~~~erA~~~A~~~gi~--~y---~~~eell~d~Di~~V~ip 71 (343)
T TIGR01761 2 DVQSVVVCGT-RF--G-QFYLAAFAAAPERFELAGILA-QGSERSRALAHRLGVP--LY---CEVEELPDDIDIACVVVR 71 (343)
T ss_pred CCcEEEEEeH-HH--H-HHHHHHHHhCCCCcEEEEEEc-CCHHHHHHHHHHhCCC--cc---CCHHHHhcCCCEEEEEeC
Confidence 3456888886 22 3 35678888887 777766655 3355566666666654 22 45556666666544 44
Q ss_pred CC--CCCCcHHHHHHHHcCCcEEEeC
Q 009759 399 SE--SETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 399 s~--~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+. .....-...+|+..|+.|++-.
T Consensus 72 t~~P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 72 SAIVGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CCCCCccHHHHHHHHHhCCCeEEEcC
Confidence 32 1222346678999999999864
No 389
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.81 E-value=37 Score=34.90 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCeEEEEEeC
Q 009759 139 RFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 139 ~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.-..+++.|.+.|++|+++...
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 3458999999999999998654
No 390
>PRK05246 glutathione synthetase; Provisional
Probab=49.52 E-value=20 Score=34.99 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=33.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+|+.+ |+............|+++-+++||+|.++++..
T Consensus 2 ~~~~~~~~--~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 2 MKVAFQMD--PIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred ceEEEEeC--CHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 89999986 455556666677889999999999999998765
No 391
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=49.47 E-value=83 Score=21.63 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=41.6
Q ss_pred cEEEEEeC--CccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 351 ARIAFIGD--GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 351 ~~l~ivG~--g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
..|.+.|. +.....+++++...+-.+...++ ..++.+|.+..... ....+|...|+|+|..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~--------~~~thvI~~~~~~~--~~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS--------KKTTHVIVGSDAGP--KKLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc--------CCceEEEECCCCCc--hHHHHHHHcCCeEecHH
Confidence 56788885 47788888888876555554443 45677777654221 12778889999998653
No 392
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=49.27 E-value=1.4e+02 Score=27.60 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+++.+. ......+...|...||+|..+.... ....
T Consensus 1 ~~ILiveDd---------~~i~~~l~~~L~~~g~~v~~~~~~~---------------------------------~a~~ 38 (229)
T COG0745 1 MRILLVEDD---------PELAELLKEYLEEEGYEVDVAADGE---------------------------------EALE 38 (229)
T ss_pred CeEEEEcCC---------HHHHHHHHHHHHHCCCEEEEECCHH---------------------------------HHHH
Q ss_pred HHHhcCCCEEEE--CCCchHHHHHHHHHH-h--cCCCEEE
Q 009759 199 EVARFKPDIIHA--SSPGIMVFGALIIAK-L--LCVPIVM 233 (526)
Q Consensus 199 ~l~~~~pDiV~~--~~~~~~~~~~~~~~~-~--~~~p~v~ 233 (526)
.+... ||+|+. ..|...++......+ . ...|+++
T Consensus 39 ~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 39 AAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred HHhcC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
No 393
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=48.89 E-value=2.2e+02 Score=26.26 Aligned_cols=73 Identities=8% Similarity=0.067 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchH
Q 009759 137 KNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIM 216 (526)
Q Consensus 137 ~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~ 216 (526)
......+.+++.+.|++|.+........ ....+.+.+...++|.|++......
T Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------------------~~~~~i~~l~~~~vdgiii~~~~~~ 67 (264)
T cd06274 15 ARIAKRLEALARERGYQLLIACSDDDPE---------------------------TERETVETLIARQVDALIVAGSLPP 67 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHH---------------------------HHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 4555677788889999998876533110 0113444455668997777543221
Q ss_pred HHHHHHHHHhcCCCEEEEEec
Q 009759 217 VFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 217 ~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.. .+......++|+|+.-.+
T Consensus 68 ~~-~~~~~~~~~ipvV~~~~~ 87 (264)
T cd06274 68 DD-PYYLCQKAGLPVVALDRP 87 (264)
T ss_pred hH-HHHHHHhcCCCEEEecCc
Confidence 11 123345578998876444
No 394
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=48.82 E-value=1.4e+02 Score=25.20 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCC-CCccccCceeccccccCCCccccccchhccc
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEG-VPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.+|+|++.++. .--..+..+++.|.+. ||.+. .+.+-. ......++.+..+ ..-+ ....
T Consensus 3 ~~~~v~lsv~d-------~dK~~l~~~a~~l~~ll~Gf~l~-AT~gTa~~L~~~~Gi~v~~v--i~~~--------~gg~ 64 (142)
T PRK05234 3 ARKRIALIAHD-------HKKDDLVAWVKAHKDLLEQHELY-ATGTTGGLIQEATGLDVTRL--LSGP--------LGGD 64 (142)
T ss_pred cCcEEEEEEec-------cchHHHHHHHHHHHHHhcCCEEE-EeChHHHHHHhccCCeeEEE--EcCC--------CCCc
Confidence 35788877653 3346788999999999 99964 222211 1011012222211 0000 0112
Q ss_pred HHHHHHHHhcCCCEEEECC----Cch---HHHHHHHHHHhcCCCEEEEEe
Q 009759 194 PRIISEVARFKPDIIHASS----PGI---MVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~----~~~---~~~~~~~~~~~~~~p~v~~~h 236 (526)
..+...+++.++|+|+... ... ........+-..++|++.+..
T Consensus 65 ~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 65 QQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred hhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 4688888888999887743 111 122333445566888776544
No 395
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=48.65 E-value=74 Score=25.16 Aligned_cols=75 Identities=8% Similarity=0.170 Sum_probs=51.9
Q ss_pred cHHHHHHHHHhCCCcEEEEEeCC---ccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHH
Q 009759 337 SLDFLKRVMDRLPEARIAFIGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 412 (526)
Q Consensus 337 g~~~li~a~~~l~~~~l~ivG~g---~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAm 412 (526)
|.+.++++++.- ++.++|+... ...+.+..+++..+|.+..+.+.+|+-..+-...+.++.-..+++.-.+++.+
T Consensus 21 G~~~v~~aik~g-k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 21 GYNKCEEAIKKK-KVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred cHHHHHHHHHcC-CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 667777777764 6888888743 23556666666666666666677889888887766666555677777777654
No 396
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=48.52 E-value=1.6e+02 Score=24.43 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=57.4
Q ss_pred CCCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHh--cCCCeEEecccChhhHHHHHH--cCcEEE
Q 009759 321 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMF--TGMPAVFTGMLLGEELSQAYA--SGDVFV 396 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~--~~~~V~~~g~v~~~~l~~~~~--~aDv~v 396 (526)
++++.++-. ...++++.|.+.+.++ +.+++++.+....+.+++.. ...++++..-. +.+.++.. .+|+++
T Consensus 22 ~d~f~v~~L---sa~~n~~~L~~q~~~f-~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~--~~l~~~~~~~~~D~vv 95 (129)
T PF02670_consen 22 PDKFEVVAL---SAGSNIEKLAEQAREF-KPKYVVIADEEAYEELKKALPSKGPGIEVLSGP--EGLEELAEEPEVDIVV 95 (129)
T ss_dssp TTTEEEEEE---EESSTHHHHHHHHHHH-T-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH--HHHHHHHTHTT-SEEE
T ss_pred CCceEEEEE---EcCCCHHHHHHHHHHh-CCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh--HHHHHHhcCCCCCEEE
Confidence 445555443 3378999999999888 56677777666566666655 34456654333 56666665 678888
Q ss_pred ecCCCCCCcH-HHHHHHHcCCcEEE
Q 009759 397 MPSESETLGL-VVLEAMSSGIPVVG 420 (526)
Q Consensus 397 ~ps~~e~~~~-~ilEAma~G~PvI~ 420 (526)
..... .-|+ ..++|+..|+-+.-
T Consensus 96 ~Ai~G-~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 96 NAIVG-FAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp E--SS-GGGHHHHHHHHHTTSEEEE
T ss_pred EeCcc-cchHHHHHHHHHCCCeEEE
Confidence 66542 2232 57889999987643
No 397
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=48.51 E-value=97 Score=30.11 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=32.5
Q ss_pred hhHHHHHHcCcEEEe--cCCCC---CCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 383 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~--ps~~e---~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
.++.++++.||++++ |...+ -++-..++.|--|.-+|-+.-|++
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 478899999999875 44444 356788888888887777665543
No 398
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.49 E-value=44 Score=29.19 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCEEEECCC--chHHHHHHHHHHhcCCCEEEEEecCCc
Q 009759 195 RIISEVARFKPDIIHASSP--GIMVFGALIIAKLLCVPIVMSYHTHVP 240 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~--~~~~~~~~~~~~~~~~p~v~~~h~~~~ 240 (526)
.+.+.+++.+||+|++.-. ..-.+ ........+.++++.+-+.+.
T Consensus 90 ~i~~~I~~~~pdiv~vglG~PkQE~~-~~~~~~~l~~~v~~~vG~~~d 136 (171)
T cd06533 90 EIIERINASGADILFVGLGAPKQELW-IARHKDRLPVPVAIGVGGSFD 136 (171)
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHH-HHHHHHHCCCCEEEEeceeeE
Confidence 4788889999999999653 22222 223344456777777655443
No 399
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=48.29 E-value=87 Score=24.99 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHh-cCCCEEEECCCc-
Q 009759 137 KNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVAR-FKPDIIHASSPG- 214 (526)
Q Consensus 137 ~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~pDiV~~~~~~- 214 (526)
-..+..+++.|.+.||++.--....... ...++.+..+..... .....+...+++ .++|+|+.....
T Consensus 11 K~~~~~~a~~l~~~G~~i~AT~gTa~~L-~~~Gi~~~~v~~~~~----------~g~~~i~~~i~~~g~idlVIn~~~~~ 79 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPLFATGGTSRVL-ADAGIPVRAVSKRHE----------DGEPTVDAAIAEKGKFDVVINLRDPR 79 (112)
T ss_pred HHHHHHHHHHHHHCCCEEEECcHHHHHH-HHcCCceEEEEecCC----------CCCcHHHHHHhCCCCEEEEEEcCCCC
Confidence 3567899999999999885321111100 012222221111111 012468888888 899998874321
Q ss_pred ------hHHHHHHHHHHhcCCCEEEEE
Q 009759 215 ------IMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 215 ------~~~~~~~~~~~~~~~p~v~~~ 235 (526)
...+.....+-..++|++...
T Consensus 80 ~~~~~~~dg~~iRR~A~~~~Ip~~T~~ 106 (112)
T cd00532 80 RDRCTDEDGTALLRLARLYKIPVTTPN 106 (112)
T ss_pred cccccCCChHHHHHHHHHcCCCEEECH
Confidence 124444556667799988653
No 400
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=47.97 E-value=1.4e+02 Score=24.28 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHCCC-eEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCc
Q 009759 136 YKNRFQNFIKYLREMGD-EVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 136 ~~~~~~~l~~~L~~~G~-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
...+..+..+++...|. ++.++....+.... .........+.+++++.+||+|+++++.
T Consensus 51 ~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~--------------------~~~~~~~~~l~~~i~~~~p~~V~t~~~~ 110 (128)
T PF02585_consen 51 GEIRRAEARAAAEILGVENVIFLDFPDGQLPG--------------------WSWEELVRDLEDLIREFRPDVVFTPDPD 110 (128)
T ss_dssp HHHHHHHHHHHHHHCT-EEEEEEEECTTSCTC--------------------HHHHHHHHHHHHHHHHH-ESEEEEE-ST
T ss_pred HHHHHHHHHHHHHHcCCceEEEeecCCCCccc--------------------ccHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 34577888888888888 66666543321111 1122345678888999999999998753
No 401
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=47.96 E-value=95 Score=26.77 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|-.....+|+..|++.|+.|.++-.+..
T Consensus 12 GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 12 GKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred ChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4445679999999999999999976543
No 402
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=47.84 E-value=2.7e+02 Score=27.62 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=57.1
Q ss_pred ccccHHHHHHHHHhCC-CcEEEEEeCCccHHHHHHHhc-------------CCCeEEecccChhhHHHHHHcCcEEEecC
Q 009759 334 VEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPS 399 (526)
Q Consensus 334 ~~Kg~~~li~a~~~l~-~~~l~ivG~g~~~~~l~~l~~-------------~~~V~~~g~v~~~~l~~~~~~aDv~v~ps 399 (526)
+...+..++++++... .+++.+- .|.....+..... .+.++++.++++++..+++-.||+-++=
T Consensus 191 e~~al~~ll~~~~~~~~pv~lLvp-~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVR- 268 (371)
T TIGR03837 191 ENAALPALLDALAQSGSPVHLLVP-EGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVR- 268 (371)
T ss_pred CChhHHHHHHHHHhCCCCeEEEec-CCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEee-
Confidence 3445899999998774 4554443 3444444444331 1248899999999999999999997743
Q ss_pred CCCCCcHHHHHHHHcCCcEEEe
Q 009759 400 ESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~ 421 (526)
.| =+.+=|..+|+|.|=-
T Consensus 269 -GE---DSFVRAqWAgkPfvWh 286 (371)
T TIGR03837 269 -GE---DSFVRAQWAGKPFVWH 286 (371)
T ss_pred -ch---hHHHHHHHcCCCceee
Confidence 22 2678899999999843
No 403
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=47.83 E-value=1.9e+02 Score=25.12 Aligned_cols=105 Identities=15% Similarity=0.254 Sum_probs=62.5
Q ss_pred EEEEEeCCc-cHHHHHHHhcCC-CeEEeccc-ChhhHHHHHH--cCcEEEecCC-CCCCcHHHHHHHHcCCcEEEeCCCC
Q 009759 352 RIAFIGDGP-YREELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~-~V~~~g~v-~~~~l~~~~~--~aDv~v~ps~-~e~~~~~ilEAma~G~PvI~~~~gg 425 (526)
++.++.+.+ ....+....... +....+.. +.++....+. ..|++++-.. .+.-|..+++.+..+.|+|......
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~ 82 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHD 82 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCC
Confidence 456666543 334455554422 33333322 2234444443 3588887544 2445667777777778887653322
Q ss_pred CC----ceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 426 IP----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 426 ~~----e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.. +.+ ..|..+++..+.+.+++.++|..++.
T Consensus 83 ~~~~~~~~~---~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 83 SPALVEQAL---NAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 22 223 56788999999999999999998875
No 404
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=47.80 E-value=1.5e+02 Score=34.41 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=56.1
Q ss_pred CCCcEEEEEeccCCCCccCchH--HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYK--NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
..++||+++... |....-|.+ .....++++|+++|++|.++..++.....-. .... ..+ +.....
T Consensus 552 ~~~kkvlilG~G-~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~--~~aD-~~y---------~e~~~~ 618 (1066)
T PRK05294 552 SDRKKVLVLGSG-PNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDY--DTSD-RLY---------FEPLTL 618 (1066)
T ss_pred CCCceEEEECcc-ccccccccccchhHHHHHHHHHHCCCEEEEEeCCcccccccc--chhh-hee---------ecCCCH
Confidence 345688877542 322222332 3567899999999999999876654211100 0000 000 011124
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
..+..++++++||.|+..................|++++
T Consensus 619 e~v~~i~~~e~~dgVi~~~g~~~~~~la~~le~~Gi~il 657 (1066)
T PRK05294 619 EDVLEIIEKEKPKGVIVQFGGQTPLKLAKALEAAGVPIL 657 (1066)
T ss_pred HHHHHHHHHcCCCEEEEEeCchhHHHHHHHHHHCCCcee
Confidence 578888999999988864322222222222334577765
No 405
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=47.69 E-value=91 Score=34.02 Aligned_cols=31 Identities=23% Similarity=0.087 Sum_probs=22.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||+|+... .......+.|.+.||+|..+.+
T Consensus 1 mkivf~g~~----------~~a~~~l~~L~~~~~~i~~V~t 31 (660)
T PRK08125 1 MKAVVFAYH----------DIGCVGIEALLAAGYEIAAVFT 31 (660)
T ss_pred CeEEEECCC----------HHHHHHHHHHHHCCCcEEEEEe
Confidence 789888542 4566677888889999985443
No 406
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=47.67 E-value=73 Score=33.43 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHH-HCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLR-EMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~-~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
..+|++++.. +..+..++..|. ++|.+|..+.........+... . .... .. .....-.....
T Consensus 327 ~GKrvai~~g----------g~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~--~--~~~~--~~-~~~i~D~~~~e 389 (513)
T TIGR01861 327 KGKKVCLWPG----------GSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKG--V--ARCG--EG-ALAIDDPNELE 389 (513)
T ss_pred CCCEEEEECC----------chHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHH--H--HhCC--CC-cEEecCCCHHH
Confidence 3468877753 157899999999 6999998887654322221110 0 0000 00 00000001123
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
..+.+++.+||+++.+... ..++++.++|++-.
T Consensus 390 ~~~~l~~~~~Dllig~s~~------~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 390 GLEAMEMLKPDIILTGKRP------GEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHHHhcCCCEEEecCcc------chhHhhcCCCEEEc
Confidence 4466788899999998742 24578899998643
No 407
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=47.60 E-value=2e+02 Score=26.07 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCC--C--cEEEEEeCCccH-HHHHHHhcCCCeEEecccChhhHHHHHHcCcEEE
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLP--E--ARIAFIGDGPYR-EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 396 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~--~--~~l~ivG~g~~~-~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v 396 (526)
...+|+|+|+-...--- .|++.++++. + +.++..|..... +.+..++...|-. =..|+++.
T Consensus 107 ~~riVvFvGSpi~e~ek-eLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~-------------~~gshlv~ 172 (259)
T KOG2884|consen 107 KQRIVVFVGSPIEESEK-ELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK-------------GDGSHLVS 172 (259)
T ss_pred ceEEEEEecCcchhhHH-HHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC-------------CCCceEEE
Confidence 34578888875322111 4444444442 3 455555643222 3333333221111 11345666
Q ss_pred ecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCC-CceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 397 MPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 397 ~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~-~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
+|.- .+++-.-.-.|++..+.|+..--+. .+ ...-|-+++.+.-+||.||+--++..
T Consensus 173 Vppg------~~L~d~l~ssPii~ge~g~a~~~~~--a~g~~f~fgvdp~~DPELAlALRlSMEEe 230 (259)
T KOG2884|consen 173 VPPG------PLLSDALLSSPIIQGEDGGAAAGLG--ANGMDFEFGVDPEDDPELALALRLSMEEE 230 (259)
T ss_pred eCCC------ccHHHHhhcCceeccCccccccccc--ccccccccCCCcccCHHHHHHHHhhHHHH
Confidence 6542 2555566678888886543322220 11 11223345556668999987665543
No 408
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=47.55 E-value=75 Score=32.05 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ 165 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~ 165 (526)
+.+.+.|+++ |+.+..-+.+.+.|.++|+.|..+..+.....
T Consensus 76 ~~~~~~VlVv---------GatG~vG~~iv~~llkrgf~vra~VRd~~~a~ 117 (411)
T KOG1203|consen 76 SKKPTTVLVV---------GATGKVGRRIVKILLKRGFSVRALVRDEQKAE 117 (411)
T ss_pred CCCCCeEEEe---------cCCCchhHHHHHHHHHCCCeeeeeccChhhhh
Confidence 4555667655 44455667788999999999999887665433
No 409
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=47.51 E-value=48 Score=30.86 Aligned_cols=46 Identities=28% Similarity=0.451 Sum_probs=34.8
Q ss_pred CCCCCcEEEEEeccCCC---CccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 114 NNSRPRRIALFVEPSPF---SYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~---~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
+..++.++++|.+..-+ +...|...-+..|.+.|.+.|++|++...
T Consensus 3 m~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~d 51 (241)
T smart00115 3 MNSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNN 51 (241)
T ss_pred CCCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecC
Confidence 44556678777665433 35678888899999999999999998743
No 410
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=47.34 E-value=36 Score=29.29 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=27.0
Q ss_pred HHHHHHc-CcEEEecCC------CCCCcHHHHHHHHcCCcEEEeC
Q 009759 385 LSQAYAS-GDVFVMPSE------SETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 385 l~~~~~~-aDv~v~ps~------~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+...+.. +|++|+.-. ..|+--.+.+|++.|+||++.-
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 3444444 899988643 2355567999999999999873
No 411
>PRK15029 arginine decarboxylase; Provisional
Probab=47.31 E-value=98 Score=34.16 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=28.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||++|.+... ....-.+.....+.+.|.+.|++|..+..
T Consensus 1 MkILIVDDD~~-~~~~~~~~i~~~L~~~Le~~G~eV~~a~s 40 (755)
T PRK15029 1 MKVLIVESEFL-HQDTWVGNAVERLADALSQQNVTVIKSTS 40 (755)
T ss_pred CeEEEEeCCcc-cccchhHHHHHHHHHHHHHCCCEEEEECC
Confidence 78999877521 11223346678889999999999997653
No 412
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.30 E-value=1.1e+02 Score=28.56 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=49.0
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+++... ............+.+++.+.|++|.+........ ......+.
T Consensus 1 ~igv~~~~---~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~---------------------------~~~~~i~~ 50 (282)
T cd06318 1 KIGFSQYT---LNSPFFAALTEAAKAHAKALGYELISTDAQGDLT---------------------------KQIADVED 50 (282)
T ss_pred CeeEEecc---ccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHH---------------------------HHHHHHHH
Confidence 46666532 2223455667788899999999998764322100 00123333
Q ss_pred HHhcCCCEEEECCCchHH-HHHHHHHHhcCCCEEEEEe
Q 009759 200 VARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~-~~~~~~~~~~~~p~v~~~h 236 (526)
+...++|.|++....... ...+..++..++|+|+...
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence 445689988875432211 1122334567899987543
No 413
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=47.20 E-value=73 Score=32.99 Aligned_cols=93 Identities=16% Similarity=0.243 Sum_probs=52.8
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHH-HCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLR-EMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~-~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
..+|+++.... .....+++.|. +.|.+|..++......+.+...... .+. ......-.....
T Consensus 326 ~GkrvaI~~~~----------~~~~~~~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~----~~~---~~i~i~d~~~~e 388 (461)
T TIGR01860 326 QGKKMCIWTGG----------PRLWHWTKALEDDLGMQVVAMSSKFGHQEDFEKVIAR----GKE---GTIYIDDGNELE 388 (461)
T ss_pred CCCEEEEECCC----------chHHHHHHHHHHhCCCEEEEEeeecCCHHHHHHHHHh----cCC---CeEEEeCCCHHH
Confidence 34588776431 35677889998 6999998876543322222111000 000 000000111234
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+.+.+++.+||+++.+... ..++.+.++|++
T Consensus 389 ~~~~~~~~~pDliig~s~~------~~~A~klgiP~v 419 (461)
T TIGR01860 389 FFEVLDLIKPDVIFTGPRV------GELVKKLHIPYV 419 (461)
T ss_pred HHHHHHhcCCCEEEeCCcc------hhhHhhcCCCEE
Confidence 5566788899999998743 235678999997
No 414
>PRK09620 hypothetical protein; Provisional
Probab=47.13 E-value=88 Score=28.86 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEEe
Q 009759 138 NRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
..-..++++|.++|++|+++..
T Consensus 30 fiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 30 TIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred HHHHHHHHHHHHCCCeEEEEeC
Confidence 5567899999999999999964
No 415
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=47.09 E-value=1.6e+02 Score=25.77 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCeEEEEE
Q 009759 140 FQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 140 ~~~l~~~L~~~G~~V~vi~ 158 (526)
..+.+..|+++|.++.+++
T Consensus 39 ~~n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 39 AANVAVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHHHHHCCCcEEEEE
Confidence 3567888888999999987
No 416
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=46.84 E-value=40 Score=29.84 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+||++.... +.+......+++.|++.|++|.++.+..
T Consensus 2 k~Ill~vtG------siaa~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSG------SIAAYKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeC------hHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 467776541 2234557899999999999999988654
No 417
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=46.78 E-value=96 Score=28.05 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=41.1
Q ss_pred EEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCC--------CCCc-----HHHHHHHHcCCcE
Q 009759 352 RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES--------ETLG-----LVVLEAMSSGIPV 418 (526)
Q Consensus 352 ~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~--------e~~~-----~~ilEAma~G~Pv 418 (526)
.+++.|+ ......+++.++.+|.+.. ..-..||++|+|... -|.+ ..+++++..|+||
T Consensus 23 ~i~~~~~-~~~~i~e~~~~~~~i~~~~--------~~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V 93 (207)
T TIGR02536 23 YIVALGD-SKHAIPEEMLKEFDVSWVT--------SEQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPI 93 (207)
T ss_pred eEEEecC-CchhhHHHHHhhcceeecc--------hhhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeE
Confidence 3444454 3344455555665655433 245689999998641 2333 6799999999999
Q ss_pred EEeCCC
Q 009759 419 VGVRAG 424 (526)
Q Consensus 419 I~~~~g 424 (526)
++...|
T Consensus 94 ~v~~eg 99 (207)
T TIGR02536 94 YILKPG 99 (207)
T ss_pred EEEecc
Confidence 998654
No 418
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=46.64 E-value=41 Score=31.29 Aligned_cols=36 Identities=8% Similarity=0.034 Sum_probs=25.5
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+.|||+++ |+.+..-..+++.|.+.||+|..++...
T Consensus 16 ~~~~ilIt---------GasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 16 KTKTVFVA---------GATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cCCeEEEE---------CCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 34788776 3334556778888889999998876543
No 419
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=46.58 E-value=86 Score=27.39 Aligned_cols=31 Identities=19% Similarity=0.080 Sum_probs=24.0
Q ss_pred ccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 132 YVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 132 ~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
...|-...+.+++....+.|..|.+++....
T Consensus 8 ~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 8 PGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3356677788888888899999999987543
No 420
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=46.13 E-value=2.1e+02 Score=26.96 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=52.5
Q ss_pred cEEEEEeccCCCCccCc-hHHHHHHHHHHHHHC---CCeEEEEEeCCCCCccccCce---eccccccCCCcc--ccccch
Q 009759 119 RRIALFVEPSPFSYVSG-YKNRFQNFIKYLREM---GDEVMVVTTHEGVPQEFYGAK---LIGSRSFPCPWY--QKVPLS 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG-~~~~~~~l~~~L~~~---G~~V~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~ 189 (526)
||||+--+ .| .+.-+..|+++|.+. |++|+|+++..+....-..+. .+++..+....+ ...+..
T Consensus 1 M~ILlTND-------DGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~yav~GTPaD 73 (261)
T PRK13931 1 MRILITND-------DGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRRFAAEGSPAD 73 (261)
T ss_pred CeEEEEcC-------CCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCeEEEcCchHH
Confidence 78866643 23 223456677777764 379999998764321111111 111111110000 011111
Q ss_pred hcccHHHHHHHHhcCCCEEEECC---C-------chHHHHHHHHHHhcCCCEEEEEe
Q 009759 190 LALSPRIISEVARFKPDIIHASS---P-------GIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~---~-------~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
. ....+..++...+||+|+.-- . ......+.+-+...|+|-|-.-.
T Consensus 74 C-V~lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 74 C-VLAALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred H-HHHHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 0 111233333325899998731 1 12234556667788999776544
No 421
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.10 E-value=64 Score=32.39 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCc
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
|-+..+++++..|+++| .|..++......+..- +...+..+........-.....+.+.+.+.+||++++.+..
T Consensus 105 GKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl-----RA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 105 GKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL-----RADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred CHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH-----HHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 66778899999999999 7777765443211100 01111111111111222334678888999999999986432
Q ss_pred hH------------------HHHHHHHHHhcCCCEEEEEec
Q 009759 215 IM------------------VFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 215 ~~------------------~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.. ......+++..++++++.-|-
T Consensus 179 T~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 179 TLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred eeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 11 122345788899999998886
No 422
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.09 E-value=78 Score=32.30 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
..+|++++... .....++..+.+.|.+|............+..... .... ......-.-...+
T Consensus 299 ~Gkrv~i~~g~----------~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~-~~~~------~~~i~~~~d~~e~ 361 (421)
T cd01976 299 EGKTVMLYVGG----------LRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEV-IPKE------GTLLYDDVTHYEL 361 (421)
T ss_pred CCCEEEEECCC----------CcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHh-hcCC------ceEEEcCCCHHHH
Confidence 34577766421 12344556888999999987653222111111100 0000 0000011123577
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+||+++.+... ..++++.++|++.
T Consensus 362 ~~~i~~~~pDliig~~~~------~~~a~k~giP~~~ 392 (421)
T cd01976 362 EEFVKRLKPDLIGSGIKE------KYVFQKMGIPFRQ 392 (421)
T ss_pred HHHHHHhCCCEEEecCcc------hhhhhhcCCCeEe
Confidence 788899999999998742 3357889999964
No 423
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=46.02 E-value=37 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=28.3
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+.+..|||++. ||.+..-..+++.|.++|++|.++...
T Consensus 6 ~~~~~~~vLVt---------G~~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 6 RESATGTYCVT---------GATGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred cccCCCEEEEE---------CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45556898666 555566778999999999999987543
No 424
>PRK06932 glycerate dehydrogenase; Provisional
Probab=46.01 E-value=1e+02 Score=30.02 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=32.9
Q ss_pred hhHHHHHHcCcEEEe--cCCCC---CCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 383 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~--ps~~e---~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
.++.++++.||++++ |...+ -++-..++.|--|.-+|-+.-|++
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 237 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPL 237 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccc
Confidence 468899999999885 44433 356788999988888887766653
No 425
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=45.68 E-value=61 Score=33.02 Aligned_cols=95 Identities=17% Similarity=0.273 Sum_probs=53.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHH-HCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLR-EMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~-~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
..+||++..+. .....+++.|. +.|.+|..++........+.. ....... ......-.....
T Consensus 287 ~Gk~vai~~~~----------~~~~~la~~l~~elG~~v~~i~~~~~~~~~~~~-~~~~~~~------~~~~v~d~~~~e 349 (415)
T cd01977 287 KGKKVCIWTGG----------PKLWHWTKVIEDELGMQVVAMSSKFGHQEDFEK-VIARGGE------GTIYIDDPNELE 349 (415)
T ss_pred CCCEEEEECCC----------chHHHHHHHHHHhcCCEEEEEEEEeccHHHHHH-HHHhcCC------ceEEEeCCCHHH
Confidence 34688776442 35789999997 899999887654322111100 0000000 000000011224
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
+.+.+++.+||+|+.+...- .++++.++|++-.
T Consensus 350 ~~~~~~~~~pdliig~s~~~------~~a~~lgip~~~~ 382 (415)
T cd01977 350 FFEILEMLKPDIILTGPRVG------ELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHhcCCCEEEecCccc------hhhhhcCCCEEec
Confidence 55667788999999987532 3567799998754
No 426
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=45.57 E-value=62 Score=32.63 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.....|||+++ ||.+..-..+++.|.++||+|.++....
T Consensus 56 ~~~~~~kVLVt---------GatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 56 KEPKDVTVLVV---------GATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cCCCCCEEEEE---------CCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 34555788766 4555666788999999999999987654
No 427
>PLN02828 formyltetrahydrofolate deformylase
Probab=45.54 E-value=1e+02 Score=29.11 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=26.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEG 162 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~ 162 (526)
..++|||+++++ |.+.-+..|+.+..+- ..+|.++..+..
T Consensus 67 ~~~~~riavlvS--------g~g~nl~~ll~~~~~g~l~~eI~~ViSn~~ 108 (268)
T PLN02828 67 LDPKYKIAVLAS--------KQDHCLIDLLHRWQDGRLPVDITCVISNHE 108 (268)
T ss_pred CCCCcEEEEEEc--------CCChhHHHHHHhhhcCCCCceEEEEEeCCC
Confidence 345689999975 3335567777776654 467777777653
No 428
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=45.53 E-value=3.1e+02 Score=27.17 Aligned_cols=230 Identities=23% Similarity=0.241 Sum_probs=116.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
-+|.++..+.++ +....+-....+.+| ..+|++... +++....+....+ ......+....
T Consensus 88 E~I~ivhghs~f------S~lahe~l~hartMG-lktVfTdHS-----lfGfad~~si~~n----~ll~~sL~~id---- 147 (426)
T KOG1111|consen 88 ERIEIVHGHSPF------SYLAHEALMHARTMG-LKTVFTDHS-----LFGFADIGSILTN----KLLPLSLANID---- 147 (426)
T ss_pred hceEEEecCChH------HHHHHHHHHHHHhcC-ceEEEeccc-----cccccchhhhhhc----ceeeeeecCCC----
Confidence 389999776443 466688888888999 777777654 2222222111111 11111111000
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCc--EEEeCChhH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD--LTLVPSVAI 276 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~ii~~S~~~ 276 (526)
.-+++.|..........++..++..-+|..+..|++-|..... ..+| .+++.|.-
T Consensus 148 ----~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~------------------~S~~i~~ivv~sRL- 204 (426)
T KOG1111|consen 148 ----RIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK------------------PSADIITIVVASRL- 204 (426)
T ss_pred ----cEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCcccc------------------CCCCeeEEEEEeee-
Confidence 0125555555555555566677778899999888876632221 1122 22333321
Q ss_pred HHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEEEE
Q 009759 277 GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFI 356 (526)
Q Consensus 277 ~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~iv 356 (526)
+..-|+|.- .++-.+.- .......|+++|.--..-+++.+++-... .-+..+.
T Consensus 205 ----------------vyrKGiDll--------~~iIp~vc-~~~p~vrfii~GDGPk~i~lee~lEk~~l--~~rV~~l 257 (426)
T KOG1111|consen 205 ----------------VYRKGIDLL--------LEIIPSVC-DKHPEVRFIIIGDGPKRIDLEEMLEKLFL--QDRVVML 257 (426)
T ss_pred ----------------eeccchHHH--------HHHHHHHH-hcCCCeeEEEecCCcccchHHHHHHHhhc--cCceEEe
Confidence 112244411 00000110 01233457777753334456666664433 4567888
Q ss_pred eCCccHHHHHHHhcCCCeEEecccChhhHHHHH--HcCcEEEecCCCCCCcHHHHHHHH-cCCcEE
Q 009759 357 GDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVFVMPSESETLGLVVLEAMS-SGIPVV 419 (526)
Q Consensus 357 G~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~--~~aDv~v~ps~~e~~~~~ilEAma-~G~PvI 419 (526)
|.-+ .+++++...+-.|.+...+++.==..+. ++|-+.+...+..|.|-++-|-|- .|.|..
T Consensus 258 G~v~-h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d~i~~~~~~~ 322 (426)
T KOG1111|consen 258 GTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPEDMITLGEPGP 322 (426)
T ss_pred cccc-hHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCccceeccCCCh
Confidence 8643 4556665555567777666532222333 344556666666666655555433 444433
No 429
>PRK09273 hypothetical protein; Provisional
Probab=45.45 E-value=1.9e+02 Score=26.16 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=29.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|||+++-+.+ ..+=-+.....+.+.|.+.||+|.=+...
T Consensus 1 mkiali~e~s---qa~kn~~i~~~L~~~L~~~G~eV~D~G~~ 39 (211)
T PRK09273 1 MKIALINENS---QAAKNAIIYEALKKVADPKGHEVFNYGMY 39 (211)
T ss_pred CeEEeecccc---hhhhhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 8999997742 22334567788999999999999877654
No 430
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=45.42 E-value=31 Score=33.41 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=27.5
Q ss_pred cEEEEEeccCCCCccCchHHHH--HHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRF--QNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~--~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||+++++. .||.+..+ ..++-.++++|+.|.+++.++.
T Consensus 1 ~r~~~~~G------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGG------KGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEE------STTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CeEEEEec------CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 78888864 26666554 5588888999999999987764
No 431
>PRK07454 short chain dehydrogenase; Provisional
Probab=45.39 E-value=38 Score=31.14 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=25.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.||.++|+ ||.+..-..+++.|.++|++|.++..+
T Consensus 5 ~~k~vlIt--------G~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALIT--------GASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEe--------CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 46665664 444566678899999999998887643
No 432
>PRK06179 short chain dehydrogenase; Provisional
Probab=45.32 E-value=89 Score=29.25 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|.+..-..+++.|.++|++|.++..+.
T Consensus 12 asg~iG~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 12 ASSGIGRATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 334455678899999999998887643
No 433
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=45.28 E-value=1.2e+02 Score=29.00 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=53.1
Q ss_pred cEEEEEeccCCCCccCchH-HHHHHHHHHHHHCCCeEEEEEeCCCCCc-----cccCce-eccccccCCCccccccchhc
Q 009759 119 RRIALFVEPSPFSYVSGYK-NRFQNFIKYLREMGDEVMVVTTHEGVPQ-----EFYGAK-LIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~ 191 (526)
.++++|+ ||.+ .-++.+++.|.+.|.+|+++........ ++.... ...+.. ...+. ....
T Consensus 99 ~~~llIa--------GGiGiaPl~~l~~~l~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~v~~-~d~~~----g~~G 165 (281)
T PRK06222 99 GTVVCVG--------GGVGIAPVYPIAKALKEAGNKVITIIGARNKDLLILEDEMKAVSDELYVTT-DDGSY----GRKG 165 (281)
T ss_pred CeEEEEe--------CcCcHHHHHHHHHHHHHCCCeEEEEEecCCHHHhhcHHHHHhhCCeEEEEc-CCCCc----Cccc
Confidence 3777775 3433 3468899999999999988875443211 111110 000000 00000 0000
Q ss_pred cc-HHHHHHHHhcC-CCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 192 LS-PRIISEVARFK-PDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 192 ~~-~~l~~~l~~~~-pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
.. ..+.+.+.... .|.|++..+..+.-...-.....++|+.+.+.
T Consensus 166 ~v~~~l~~~~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv~~~~sle 212 (281)
T PRK06222 166 FVTDVLKELLESGKKVDRVVAIGPVIMMKFVAELTKPYGIKTIVSLN 212 (281)
T ss_pred chHHHHHHHhhcCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEECc
Confidence 11 12223333222 57888888876655544555667888766544
No 434
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=45.14 E-value=59 Score=33.30 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=26.3
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.|||+++.- +..-...++.|.+.|++|++.-....
T Consensus 7 ~~kv~V~GL----------G~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGL----------GKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEec----------ccccHHHHHHHHHCCCeEEEEcCCCC
Confidence 589988843 12237889999999999999875543
No 435
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=45.14 E-value=1.7e+02 Score=24.46 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=46.5
Q ss_pred EEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe-CCCCCCcee
Q 009759 353 IAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 430 (526)
Q Consensus 353 l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~-~~gg~~e~v 430 (526)
++-+|+|.... .. +.++.|+--.+++.++...|.++|. ...-++++.++..++|.|.. +..-..|++
T Consensus 34 IvQyGn~d~kp-----va--gl~v~~F~~~~kiQsli~darIVIS----HaG~GSIL~~~rl~kplIv~pr~s~y~elv 101 (161)
T COG5017 34 IVQYGNGDIKP-----VA--GLRVYGFDKEEKIQSLIHDARIVIS----HAGEGSILLLLRLDKPLIVVPRSSQYQELV 101 (161)
T ss_pred eeeecCCCccc-----cc--ccEEEeechHHHHHHHhhcceEEEe----ccCcchHHHHhhcCCcEEEEECchhHHHhh
Confidence 34478765333 11 3678899888999999999998873 22345899999999998765 344455555
No 436
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.11 E-value=2.5e+02 Score=31.15 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=32.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
++-|++.|+.. ....|-.....+||..|+..|..|.++-.+.
T Consensus 529 ~~~kvI~vtS~---~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 529 TENNILMITGA---TPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCCeEEEEecC---CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34577777764 3345677889999999999999999997653
No 437
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=45.07 E-value=1.1e+02 Score=31.68 Aligned_cols=109 Identities=19% Similarity=0.109 Sum_probs=57.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|+-++|+.. ....|=...+..|+++|+++|++|..+-++........-....+....... .+ ......+.+
T Consensus 3 m~~i~I~gt---~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~g~~~~~ld-----~~-~~~~~~v~~ 73 (451)
T PRK01077 3 MPALVIAAP---ASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAATGRPSRNLD-----SW-MMGEELVRA 73 (451)
T ss_pred CcEEEEEeC---CCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHHhCCCcccCC-----ce-eCCHHHHHH
Confidence 665666542 333566677899999999999999998764322110000000111111111 00 011233444
Q ss_pred HHHh--cCCCEEEECCCchH---------HHHHHHHHHhcCCCEEEEEe
Q 009759 199 EVAR--FKPDIIHASSPGIM---------VFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 199 ~l~~--~~pDiV~~~~~~~~---------~~~~~~~~~~~~~p~v~~~h 236 (526)
.+.+ .+.|++++...... .....-+++..+.|+|+...
T Consensus 74 ~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~ 122 (451)
T PRK01077 74 LFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVD 122 (451)
T ss_pred HHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEEC
Confidence 4433 36899987543100 01134567888999998765
No 438
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=45.07 E-value=2.4e+02 Score=25.69 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCEEEEC-----CCchHHHHHHHHHHh-cCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCc
Q 009759 194 PRIISEVARFKPDIIHAS-----SPGIMVFGALIIAKL-LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 267 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~-----~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 267 (526)
..-.+.+.+...|.+|+. ......+....+... ...+..+++|-+.. ...+.+..++-..+|
T Consensus 19 ~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~------------~p~~~i~~fa~agad 86 (220)
T COG0036 19 GEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVE------------NPDRYIEAFAKAGAD 86 (220)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecC------------CHHHHHHHHHHhCCC
Confidence 344445556688999984 222222333333332 24467788886542 223356677777799
Q ss_pred EEEeCCh
Q 009759 268 LTLVPSV 274 (526)
Q Consensus 268 ~ii~~S~ 274 (526)
.|.+.-+
T Consensus 87 ~It~H~E 93 (220)
T COG0036 87 IITFHAE 93 (220)
T ss_pred EEEEEec
Confidence 9988766
No 439
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=45.03 E-value=1.4e+02 Score=27.80 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
-.||++++.+ . ......+.+.|.+.|++|.-+..-..... ..+-.+ -...+.
T Consensus 120 ~~RIalvTPY---~-----~~v~~~~~~~l~~~G~eV~~~~~~~~~~~----~~ia~i----------------~p~~i~ 171 (239)
T TIGR02990 120 VRRISLLTPY---T-----PETSRPMAQYFAVRGFEIVNFTCLGLTDD----REMARI----------------SPDCIV 171 (239)
T ss_pred CCEEEEECCC---c-----HHHHHHHHHHHHhCCcEEeeeeccCCCCC----ceeeec----------------CHHHHH
Confidence 3599999763 2 26678889999999999998854221110 011000 011233
Q ss_pred HHHH---hcCCCEEEECCCchHHHHH-HHHHHhcCCCEEEE
Q 009759 198 SEVA---RFKPDIIHASSPGIMVFGA-LIIAKLLCVPIVMS 234 (526)
Q Consensus 198 ~~l~---~~~pDiV~~~~~~~~~~~~-~~~~~~~~~p~v~~ 234 (526)
+.++ .-++|.|++.......+.. -.+-...|+|++-.
T Consensus 172 ~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 172 EAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred HHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEH
Confidence 3333 4578888887654433332 22446689999753
No 440
>PLN02206 UDP-glucuronate decarboxylase
Probab=44.81 E-value=34 Score=35.19 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=28.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
..+.|||++. ||.+..-..|++.|.++|++|.++.
T Consensus 116 ~~~~~kILVT---------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 116 KRKGLRVVVT---------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred ccCCCEEEEE---------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 4456898665 6667778889999999999999875
No 441
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=44.78 E-value=1.2e+02 Score=27.82 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchHH
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMV 217 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~ 217 (526)
..+...+++|+++|++|..+........ -.+...+.+.+++.+++-|++..+.-..
T Consensus 49 saMRhfa~~L~~~G~~V~Y~~~~~~~~~------------------------~s~~~~L~~~~~~~~~~~~~~~~P~d~~ 104 (224)
T PF04244_consen 49 SAMRHFADELRAKGFRVHYIELDDPENT------------------------QSFEDALARALKQHGIDRLHVMEPGDYR 104 (224)
T ss_dssp HHHHHHHHHHHHTT--EEEE-TT-TT--------------------------SSHHHHHHHHHHHH----EEEE--S-HH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCcccc------------------------ccHHHHHHHHHHHcCCCEEEEECCCCHH
Confidence 4578999999999999999976543111 0133577888999999999998876544
Q ss_pred HHHHH--HHHhcCCCEEEEEec
Q 009759 218 FGALI--IAKLLCVPIVMSYHT 237 (526)
Q Consensus 218 ~~~~~--~~~~~~~p~v~~~h~ 237 (526)
+...+ ++...++++.+.-..
T Consensus 105 l~~~l~~~~~~~~i~~~~~~~~ 126 (224)
T PF04244_consen 105 LEQRLESLAQQLGIPLEVLEDP 126 (224)
T ss_dssp HHHHHHH----SSS-EEEE--T
T ss_pred HHHHHHhhhcccCCceEEeCCC
Confidence 43332 334567777654444
No 442
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=44.50 E-value=1.4e+02 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=32.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|||+.|... |.. .|-....+...++.+.+.|.+|.++.....
T Consensus 1 mki~~I~gs-~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~ 42 (207)
T COG0655 1 MKILGINGS-PRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEK 42 (207)
T ss_pred CeeeEEEec-CCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 788777653 323 566777788999999999999999987653
No 443
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=44.38 E-value=91 Score=33.20 Aligned_cols=122 Identities=16% Similarity=0.043 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCC-
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP- 213 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~- 213 (526)
|.++.-+.+++.|.++||+|.++-.+.+..+.... .+...+.-. .......+...-.+.|.+++...
T Consensus 424 G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~---~g~~~i~GD---------~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 424 GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE---RGIRAVLGN---------AANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---CCCeEEEcC---------CCCHHHHHhcCccccCEEEEEcCC
Confidence 44577889999999999999999765432211110 111111110 11123344344457886665322
Q ss_pred -chHH-HHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcc
Q 009759 214 -GIMV-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARV 285 (526)
Q Consensus 214 -~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~ 285 (526)
.... .......+...++++...++.. ..+..-...+|.++.+.....+.+.+.-.
T Consensus 492 ~~~~~~iv~~~~~~~~~~~iiar~~~~~-----------------~~~~l~~~Gad~vv~p~~~~a~~i~~~l~ 548 (558)
T PRK10669 492 GYEAGEIVASAREKRPDIEIIARAHYDD-----------------EVAYITERGANQVVMGEREIARTMLELLE 548 (558)
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEECCHH-----------------HHHHHHHcCCCEEEChHHHHHHHHHHHhc
Confidence 2221 2122223334556666544321 11112224589999988888888876643
No 444
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=44.37 E-value=66 Score=25.73 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCeEEEEEeCCCCCccc--cCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 139 RFQNFIKYLREMGDEVMVVTTHEGVPQEF--YGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 139 ~~~~l~~~L~~~G~~V~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
...+.++.++++|+++.++..+.+..... ...+.+... .......+.....+.+.+++...|.+|-...
T Consensus 13 ia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~------~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg 83 (110)
T PF00289_consen 13 IAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEP------PGPSPESYLNIEAIIDIARKEGADAIHPGYG 83 (110)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEE------SSSGGGTTTSHHHHHHHHHHTTESEEESTSS
T ss_pred HHHHHHHHHHHhCCcceeccCchhcccccccccccceecC------cchhhhhhccHHHHhhHhhhhcCcccccccc
Confidence 38889999999999999998866432211 011111111 0111122345568888999889999987543
No 445
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=44.36 E-value=1.5e+02 Score=22.91 Aligned_cols=91 Identities=23% Similarity=0.339 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCCe-EEecccChhhHHHHHHcC--cEEEecCCC-CCCcHHHHHHHH---cCCcEEE-eCCCC---CCcee
Q 009759 362 REELEKMFTGMPA-VFTGMLLGEELSQAYASG--DVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRAGG---IPDII 430 (526)
Q Consensus 362 ~~~l~~l~~~~~V-~~~g~v~~~~l~~~~~~a--Dv~v~ps~~-e~~~~~ilEAma---~G~PvI~-~~~gg---~~e~v 430 (526)
.+.++...+..++ .+...-+.++....+... |++++-... +.-+..+++.+. .+.|+|. ++... ..+.+
T Consensus 11 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~ 90 (112)
T PF00072_consen 11 RELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL 90 (112)
T ss_dssp HHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHH
Confidence 3445555554455 444444446666666554 677766543 344555555554 3677764 33333 23334
Q ss_pred cccCCCceeEeeCCCCHHHHHHHHH
Q 009759 431 PEDQDGKIGYLFNPGDLDDCLSKLE 455 (526)
Q Consensus 431 ~~~~~~~~g~~~~~~d~~~la~ai~ 455 (526)
+.|..+++..+-+.+++.++|+
T Consensus 91 ---~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 91 ---RAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ---HTTESEEEESSSSHHHHHHHHH
T ss_pred ---HCCCCEEEECCCCHHHHHHhhC
Confidence 6788999999999999998874
No 446
>PRK14072 6-phosphofructokinase; Provisional
Probab=44.26 E-value=1.8e+02 Score=29.59 Aligned_cols=113 Identities=8% Similarity=-0.069 Sum_probs=60.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCC--ccccCc---eecc---ccccCCCcccccc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVP--QEFYGA---KLIG---SRSFPCPWYQKVP 187 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~--~~~~~~---~~~~---~~~~~~~~~~~~~ 187 (526)
+|||++++..- +..|....+..+++...+.| ++|.-+-.+.... ..+... .... +...+-.......
T Consensus 3 ~k~i~IltsGG---dapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR 79 (416)
T PRK14072 3 KGNALYAQSGG---PTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCR 79 (416)
T ss_pred CceEEEEccCC---chHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCC
Confidence 47999998753 33577788889999998888 7777776543211 000000 0000 0000100111111
Q ss_pred c-------hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHh---cC--CCEEE
Q 009759 188 L-------SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKL---LC--VPIVM 233 (526)
Q Consensus 188 ~-------~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~---~~--~p~v~ 233 (526)
. ......++.+.+++++.|.+++-.-....-.+..++.. .+ +++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIg 137 (416)
T PRK14072 80 YKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIG 137 (416)
T ss_pred CCCcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEE
Confidence 1 12235678888899999988876543333233333332 34 77776
No 447
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=44.03 E-value=39 Score=31.48 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=27.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||||+.-+. |=.+.-+..|+++|++.| +|+|+++..+
T Consensus 1 M~ILltNDD------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 1 MKILLTNDD------GIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred CeEEEECCC------CCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 788765331 223456889999999998 9999998654
No 448
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=43.61 E-value=1.2e+02 Score=24.40 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASS 212 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~ 212 (526)
..+..-..-++..|+..||+|..+...-. ...+.+.+.+.+||+|.+..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~------------------------------~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVP------------------------------PEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCC------------------------------HHHHHHHHHHcCCCEEEEec
Confidence 44555677888899999999966542211 13667778888999988865
No 449
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=43.46 E-value=2.1e+02 Score=24.45 Aligned_cols=107 Identities=24% Similarity=0.324 Sum_probs=64.7
Q ss_pred CCcEEEEEeCC-ccHHHHHHHhcCC--CeEEecccChhhHHHHHHcC--cEEEec-CCCCCCcHHHHHHHHcCCc----E
Q 009759 349 PEARIAFIGDG-PYREELEKMFTGM--PAVFTGMLLGEELSQAYASG--DVFVMP-SESETLGLVVLEAMSSGIP----V 418 (526)
Q Consensus 349 ~~~~l~ivG~g-~~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~a--Dv~v~p-s~~e~~~~~ilEAma~G~P----v 418 (526)
|+-.+.|+-+. +....+....... .|.....+ ++.....+.. ...|+- -...|.|+.++|++..-.+ |
T Consensus 8 pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~--~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~riv 85 (182)
T COG4567 8 PDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESV--EEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIV 85 (182)
T ss_pred CCceeEEecCChHHHHHHHHHHhccCceeEeeccH--HHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEE
Confidence 44456666643 2333343333332 24444444 4444444433 222222 2357899999999988755 6
Q ss_pred EEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHh
Q 009759 419 VGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 457 (526)
Q Consensus 419 I~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~l 457 (526)
|.|..+.+.--+...+-|-+-++..+.|.+++..++.+-
T Consensus 86 vLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 86 VLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 777777665544333667788899999999999998765
No 450
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=43.29 E-value=84 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=19.6
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
||.+..-..+++.|.++|++|.++..
T Consensus 8 GatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 8 GGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred cCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 45556667799999999998766554
No 451
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=43.28 E-value=53 Score=30.07 Aligned_cols=114 Identities=20% Similarity=0.341 Sum_probs=54.6
Q ss_pred EEEEecccccccHHHHHHHHHhCCCcEEEEEeCCc--cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCC--
Q 009759 326 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGP--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-- 401 (526)
Q Consensus 326 i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~--~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~-- 401 (526)
|+=.|++....-+|++++-.+.-+|+...++|+|. ..++++.... +.+.++ .-|++|+-|-.
T Consensus 6 iiKlGNig~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~~------------~~~~~~--~pdf~I~isPN~~ 71 (276)
T PF01993_consen 6 IIKLGNIGTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVVT------------KMLKEW--DPDFVIVISPNAA 71 (276)
T ss_dssp EEEES--HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHHH------------HHHHHH----SEEEEE-S-TT
T ss_pred EEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHH------------HHHHhh--CCCEEEEECCCCC
Confidence 44556665555556655544445689999999874 1222222110 111122 45777765554
Q ss_pred CCCcHHHHHHH-HcCCcEEE-eCCCCC--CceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 402 ETLGLVVLEAM-SSGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 402 e~~~~~ilEAm-a~G~PvI~-~~~gg~--~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
-+.|.+.-|.+ +.|+|+|. +|.++. .+-+ ++..-|+++-..| .+.-+=.++|
T Consensus 72 ~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l---~~~g~GYIivk~D--pMIGArREFL 127 (276)
T PF01993_consen 72 APGPTKAREMLSAKGIPCIVISDAPTKKAKDAL---EEEGFGYIIVKAD--PMIGARREFL 127 (276)
T ss_dssp SHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHH---HHTT-EEEEETTS--------TTT-
T ss_pred CCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHH---HhcCCcEEEEecC--cccccccccc
Confidence 44556777887 58999875 454443 3444 5667888876544 3444444443
No 452
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=42.95 E-value=1.8e+02 Score=27.05 Aligned_cols=88 Identities=14% Similarity=0.014 Sum_probs=47.2
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHC---CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREM---GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~---G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
||+++... .........+..+.+++.+. |+++.++.......... ....+
T Consensus 1 ~Ig~i~~~---~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~------------------------~~~~~ 53 (272)
T cd06300 1 KIGLSNSY---AGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQ------------------------QIADI 53 (272)
T ss_pred CeEEeccc---cCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHH------------------------HHHHH
Confidence 57777642 33345556677788888888 98654443322111100 01133
Q ss_pred HHHHHhcCCCEEEECCCchHHHH-HHHHHHhcCCCEEEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFG-ALIIAKLLCVPIVMSY 235 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~-~~~~~~~~~~p~v~~~ 235 (526)
.+ +...++|.|++......... .+..++..++|+|...
T Consensus 54 ~~-~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~ 92 (272)
T cd06300 54 RN-LIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFD 92 (272)
T ss_pred HH-HHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEe
Confidence 33 34449999988654322111 2334456789988753
No 453
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.95 E-value=2.9e+02 Score=28.69 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=57.2
Q ss_pred EEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHH
Q 009759 121 IALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEV 200 (526)
Q Consensus 121 Iliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 200 (526)
+++|+. |.++|-...++.+...+...+.. +++-.+.......++....+ .... .+.+ ....+.+
T Consensus 260 liLvTG----PTGSGKTTTLY~~L~~ln~~~~n--I~TiEDPVE~~~~gI~Q~qV-----N~k~----gltf-a~~LRa~ 323 (500)
T COG2804 260 LILVTG----PTGSGKTTTLYAALSELNTPERN--IITIEDPVEYQLPGINQVQV-----NPKI----GLTF-ARALRAI 323 (500)
T ss_pred EEEEeC----CCCCCHHHHHHHHHHHhcCCCce--EEEeeCCeeeecCCcceeec-----cccc----CCCH-HHHHHHH
Confidence 555554 45567777778888887765544 55544433333333322221 1111 1222 3455555
Q ss_pred HhcCCCEEEECCCc-hHHHHHHHHHHhcCCCEEEEEecCC
Q 009759 201 ARFKPDIIHASSPG-IMVFGALIIAKLLCVPIVMSYHTHV 239 (526)
Q Consensus 201 ~~~~pDiV~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~ 239 (526)
-+.+||||.+.... .-......-+...|-=++-++|...
T Consensus 324 LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnd 363 (500)
T COG2804 324 LRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTND 363 (500)
T ss_pred hccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCc
Confidence 56699999997532 2222334456677888888999743
No 454
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=42.95 E-value=1.6e+02 Score=30.39 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=55.5
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCceeccccccCCCccccccchhcccH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+|++++.+ ...+..+++.|.+.|.++.++......... ....+.+. ...+. ......-.-..
T Consensus 311 ~Gkrvai~~~----------~~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~---~~~vv~~~d~~ 376 (461)
T TIGR02931 311 ADKRVAIYGN----------PDLVIGLAEFCLDLEMKPVLLLLGDDNSGYVDDPRIKALQ-ENVDY---DMEIVTNADFW 376 (461)
T ss_pred CCCeEEEEeC----------HHHHHHHHHHHHHCCCEEEEEEECCCCcccchhHHHHHHH-hhCCC---CceEEeCCCHH
Confidence 3468877754 267899999999999999876544321111 00000000 00000 00001111234
Q ss_pred HHHHHHHh--cCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 195 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 195 ~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
.+.+.+++ .+||+++.++.. ..++++.++|++-.
T Consensus 377 ~l~~~i~~~~~~~Dliig~s~~------~~~a~k~gip~~~~ 412 (461)
T TIGR02931 377 ELESRIKNQGLELDLILGHSKG------RFISIDYNIPMVRV 412 (461)
T ss_pred HHHHHHHhcCCCCCEEEECcch------HHHHHHcCCCEEEe
Confidence 66777775 589999998752 34567889998743
No 455
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=42.94 E-value=46 Score=27.80 Aligned_cols=34 Identities=26% Similarity=0.217 Sum_probs=26.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMV 156 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~v 156 (526)
|||+|+-. ...|..+..+..+++.|...|++|.+
T Consensus 1 M~i~IiY~----S~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYL----SLSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEE----CCCChHHHHHHHHHHHHhhCCeeEEe
Confidence 78888753 34467788889999999999999873
No 456
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=42.93 E-value=48 Score=33.47 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=51.0
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+||++..+ ..+...+++.|.+.|.+|..+................- .... ..+.. -.-...+.
T Consensus 271 g~~v~i~~~----------~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~-~~~~----~~v~~-~~~~~~~~ 334 (398)
T PF00148_consen 271 GKRVAIYGD----------PDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLL-EESD----PEVII-DPDPEEIE 334 (398)
T ss_dssp T-EEEEESS----------HHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHH-HTTC----SEEEE-SCBHHHHH
T ss_pred CceEEEEcC----------chhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHh-hCCC----cEEEe-CCCHHHHH
Confidence 357876543 27788999999999999999987654322211000000 0000 00000 01235788
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.+||+++.+.. ...+++..++|.+.
T Consensus 335 ~~l~~~~pdl~ig~~~------~~~~a~~~~~~~~~ 364 (398)
T PF00148_consen 335 ELLEELKPDLLIGSSH------ERYLAKKLGIPLIR 364 (398)
T ss_dssp HHHHHHT-SEEEESHH------HHHHHHHTT--EEE
T ss_pred HHHHhcCCCEEEechh------hHHHHHHhCCCeEE
Confidence 8899999999999863 23345566555543
No 457
>PRK08462 biotin carboxylase; Validated
Probab=42.77 E-value=1.8e+02 Score=29.93 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchH
Q 009759 139 RFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIM 216 (526)
Q Consensus 139 ~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~ 216 (526)
....++++++++|++|.++....+.... ....+.+.+ +.. .....+.-...+.++.++.++|.||-......
T Consensus 15 ~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~---~~~---~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~ls 88 (445)
T PRK08462 15 IALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICI---GGA---KSSESYLNIPAIISAAEIFEADAIFPGYGFLS 88 (445)
T ss_pred HHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEe---CCC---chhcccCCHHHHHHHHHHcCCCEEEECCCccc
Confidence 3678999999999999988754432111 011111100 000 00011122357888999999999997652211
Q ss_pred H-HHHHHHHHhcCCCEE
Q 009759 217 V-FGALIIAKLLCVPIV 232 (526)
Q Consensus 217 ~-~~~~~~~~~~~~p~v 232 (526)
. ..........|++++
T Consensus 89 e~~~~a~~~e~~Gi~~~ 105 (445)
T PRK08462 89 ENQNFVEICSHHNIKFI 105 (445)
T ss_pred cCHHHHHHHHHCCCeEE
Confidence 0 111123455676654
No 458
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=42.61 E-value=30 Score=35.55 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=26.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+|+ |++..-+.-+.+|+++||+|+++-.++
T Consensus 1 ~rVai~----------GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIA----------GAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEE----------cccHHHHHHHHHHHhCCCceEEEeccC
Confidence 678776 334666788999999999999997654
No 459
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=42.44 E-value=60 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=29.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC---CeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG---DEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G---~~V~vi~~~~~ 162 (526)
|||+++....|. ..........++......| ++|.|+..+.+
T Consensus 1 k~v~~i~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~g 45 (122)
T PF02635_consen 1 KKVFFIVTSGPY--DDERAKIALRLANAAAAMGDYGHDVVVFFHGDG 45 (122)
T ss_dssp EEEEEEE-S-TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGG
T ss_pred CEEEEEecCCCC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchH
Confidence 688888775442 2333677888899999999 99999987654
No 460
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=42.29 E-value=68 Score=29.03 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=27.7
Q ss_pred CCCcEEEEEeccCCCCccCchH-HHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYK-NRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.+++||++... ||.. ..+..+++.|.+ |++|.++.+..
T Consensus 17 ~~~k~IllgVt-------GSIAAyk~~~lvr~L~~-g~~V~VvmT~~ 55 (209)
T PLN02496 17 PRKPRILLAAS-------GSVAAIKFGNLCHCFSE-WAEVRAVVTKA 55 (209)
T ss_pred CCCCEEEEEEe-------CHHHHHHHHHHHHHhcC-CCeEEEEEChh
Confidence 45678877765 4433 447889999984 99999988754
No 461
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.13 E-value=49 Score=32.08 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.8
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.+|||+|+. .+..-..+++.|.+.||+|.++...
T Consensus 3 ~~m~I~iiG----------~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILG----------AGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEEC----------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 358998883 3466788999999999999988654
No 462
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=41.98 E-value=1.7e+02 Score=27.30 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCchH
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIM 216 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~ 216 (526)
..+.+.++.++ .+.++.|+....+.+.... +. .....+.+.+-+...|+|+.|+++..
T Consensus 171 ~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~----------p~----------~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 171 ERIKEDIREAR-KKADVVIVSLHWGIEYENY----------PT----------PEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred HHHHHHHHHHh-cCCCEEEEEeccCCCCCCC----------CC----------HHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 55777788888 5789999888775332111 11 11234555555568999999998653
No 463
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=41.83 E-value=2.3e+02 Score=27.33 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=30.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.+++..++. +...|=...+..++..+.+.|+.|.++..+..
T Consensus 33 ~~~~i~i~G----~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITG----TPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 356656654 34467777789999999999999999886643
No 464
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=41.81 E-value=79 Score=27.50 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=27.0
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+..+|++++.. |..+-.-+.+++.|.+.|++|+++...+
T Consensus 24 ~~~~v~il~G~------GnNGgDgl~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 24 KGPRVLILCGP------GNNGGDGLVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp TT-EEEEEE-S------SHHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCeEEEEECC------CCChHHHHHHHHHHHHCCCeEEEEEEec
Confidence 34589888763 3344456778999999999999966543
No 465
>PLN02650 dihydroflavonol-4-reductase
Probab=41.77 E-value=53 Score=32.38 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=27.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.+.+++|++. ||.+..-..+++.|.+.|++|.++...
T Consensus 2 ~~~~k~iLVT---------GatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 2 GSQKETVCVT---------GASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCCCCEEEEe---------CCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 3455677554 566677788999999999999988654
No 466
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=41.63 E-value=69 Score=34.97 Aligned_cols=32 Identities=6% Similarity=-0.113 Sum_probs=23.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVM 155 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~ 155 (526)
....|||++. ||.+..-..|++.|.++|++|.
T Consensus 377 ~~~~mkiLVt---------Ga~G~iG~~l~~~L~~~g~~v~ 408 (668)
T PLN02260 377 GKPSLKFLIY---------GRTGWIGGLLGKLCEKQGIAYE 408 (668)
T ss_pred CCCCceEEEE---------CCCchHHHHHHHHHHhCCCeEE
Confidence 3455888666 5555666788999999999985
No 467
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=41.51 E-value=73 Score=28.71 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=30.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEG 162 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~ 162 (526)
..||++.|+.. ...-|-.....+|+.+|++ .|++|.++-.+..
T Consensus 33 ~~~~vi~v~s~---kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 33 KNNNLIMVTSS---LPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCCeEEEEECC---CCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 45677666652 3334566778999999996 6999999976543
No 468
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=41.43 E-value=52 Score=27.09 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=29.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeE-EEEEeCCC
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEV-MVVTTHEG 162 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V-~vi~~~~~ 162 (526)
|++|+....|+ .+-..+..+.+++++.+.||+| .|+...++
T Consensus 1 ~~~iv~~~~P~--~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 42 (127)
T TIGR03012 1 KYTLLVTGPPY--GTQAASSAYQFAQALLAKGHEIVRVFFYQDG 42 (127)
T ss_pred CEEEEEeCCCC--CcHHHHHHHHHHHHHHHCCCcEEEEEEehHH
Confidence 46677665553 3446678999999999999995 77765543
No 469
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=41.42 E-value=90 Score=35.94 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=56.7
Q ss_pred cEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeCCCCCccccC--ceecc--cccc-CCCccccccchhcc
Q 009759 119 RRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTHEGVPQEFYG--AKLIG--SRSF-PCPWYQKVPLSLAL 192 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~--~~~~~--~~~~-~~~~~~~~~~~~~~ 192 (526)
.++++|. ||.+.. ++.+++.|.+.|.+|+++.........+.. ..... +... ...+.. ..-..
T Consensus 100 ~~vllVa--------GGiGIAPl~s~~r~l~~~g~~v~li~g~R~~~~l~~~del~~~~~~~~v~tddgs~G---~~G~v 168 (1006)
T PRK12775 100 GHVVLVG--------GGLGVAPVYPQLRAFKEAGARTTGIIGFRNKDLVFWEDKFGKYCDDLIVCTDDGSYG---KPGFV 168 (1006)
T ss_pred CeEEEEE--------EhHHHHHHHHHHHHHHhCCCcEEEEEeCCChHHcccHHHHHhhcCcEEEEECCCCCC---CCCCh
Confidence 4777775 455544 789999999999999888764432211110 00000 0000 000000 00011
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
...+.+.+.+.++|.|++..|..+.-....+.+..++|+++...
T Consensus 169 t~~l~~~l~~~~~d~vy~CGP~~Mm~av~~~~~~~gi~~~vSle 212 (1006)
T PRK12775 169 TAALKEVCEKDKPDLVVAIGPLPMMNACVETTRPFGVKTMVSLN 212 (1006)
T ss_pred HHHHHHHhccCCCCEEEEECCHHHHHHHHHHHHHCCCcEEECCh
Confidence 12333444444678999999877665555556677887665443
No 470
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=41.29 E-value=91 Score=29.62 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
++++|..++. +.+.|=...+..|+..|++.|+.|.++..+.
T Consensus 70 ~~~~vi~l~G----~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVG----VNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3457766663 3445667778999999999999999998654
No 471
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=41.27 E-value=2.9e+02 Score=26.36 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=53.1
Q ss_pred ccccHHHHHHHH-HhC-CCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC---CCCCcH--
Q 009759 334 VEKSLDFLKRVM-DRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE---SETLGL-- 406 (526)
Q Consensus 334 ~~Kg~~~li~a~-~~l-~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~---~e~~~~-- 406 (526)
..-|=+++++++ +++ ++.+++++...+... . +..+|.-....+..++...+..+|++|...- .+..+.
T Consensus 10 ~N~GDe~~l~~~l~~l~~~~~~~v~s~~p~~~--~---~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~ 84 (298)
T TIGR03609 10 GNLGDEALLAALLRELPPGVEPTVLSNDPAET--A---KLYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRS 84 (298)
T ss_pred CCcchHHHHHHHHHhcCCCCeEEEecCChHHH--H---hhcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCccccc
Confidence 344666666655 333 678888887554222 2 2236666666666688899999999997642 122111
Q ss_pred ------HHHHHHHcCCcEEEeCCC
Q 009759 407 ------VVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 407 ------~ilEAma~G~PvI~~~~g 424 (526)
.+.-|..+|+|++....|
T Consensus 85 ~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 85 LLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc
Confidence 234466789999876554
No 472
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=41.25 E-value=2.2e+02 Score=29.71 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=59.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.-||+|++++ +..|... ..-+++.|...|.++.+..++.-.... . ..
T Consensus 36 ~~~I~I~~d~----DaDGitS-~ail~~~L~~~g~~~~~~ip~~~~~~~---------------------------g-~~ 82 (491)
T COG0608 36 GEKILIYGDY----DADGITS-AAILAKALRRLGADVDYYIPNRFEEGY---------------------------G-AI 82 (491)
T ss_pred CCEEEEEEec----CcccHHH-HHHHHHHHHHcCCceEEEeCCCccccc---------------------------h-HH
Confidence 4589999884 4466543 456888999999999998875421100 0 22
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
+.+.....|+|+..+...........++..|+.+|++-|-
T Consensus 83 ~~~~~~~~~liItvD~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 83 RKLKEEGADLIITVDNGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred HHHHhcCCCEEEEECCCcccHHHHHHHHhCCCcEEEECCC
Confidence 2555668899999887666666666666778988887776
No 473
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=41.14 E-value=2.9e+02 Score=25.40 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.1
Q ss_pred EEEEEeccCCCCccCchH--HHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 120 RIALFVEPSPFSYVSGYK--NRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
+|.++++ ..||.+ ....++..+|+.+|+.|.++-.+-+
T Consensus 3 ~iIVvTS-----GKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTS-----GKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEec-----CCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 5656654 235555 4568999999999999999987644
No 474
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=41.13 E-value=2.6e+02 Score=24.94 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=69.2
Q ss_pred EEEEeCC-ccHHHHHHHhcCCCeEEecccChhhHHHHH--HcCcEEEecCCCCC-CcHHH---HHHHHcCCcEE-EeCCC
Q 009759 353 IAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVFVMPSESET-LGLVV---LEAMSSGIPVV-GVRAG 424 (526)
Q Consensus 353 l~ivG~g-~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~--~~aDv~v~ps~~e~-~~~~i---lEAma~G~PvI-~~~~g 424 (526)
++++-+. ..++.+..+....+.....|.+.+++..-. ...-|+|+--+.-| -|+-+ +......+||| .|..|
T Consensus 7 V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhg 86 (202)
T COG4566 7 VHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHG 86 (202)
T ss_pred EEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCC
Confidence 3444432 356667777777777777787655554332 11245555444333 34444 34445668886 56777
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 462 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~ 462 (526)
.++..+...+.|---|+-.|-+.+.+.+++.+.++...
T Consensus 87 DIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 87 DIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred ChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 77777644456666678889999999999999987433
No 475
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=40.92 E-value=61 Score=31.35 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.++||+|.++..+.
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5666667789999999999998877543
No 476
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.75 E-value=48 Score=28.57 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=25.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|||.|| |.+..-..+++.|.+.||+|.++...
T Consensus 2 ~~Ig~I----------GlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFI----------GLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE------------SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEE----------chHHHHHHHHHHHHhcCCeEEeeccc
Confidence 688888 34467788999999999999987543
No 477
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=40.63 E-value=3.7e+02 Score=26.45 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=74.5
Q ss_pred HHHHHHhhcCcEEEeCC--hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHH---HHHhhcCCCCCCcEEEEEec
Q 009759 257 LVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 331 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S--~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~vG~ 331 (526)
-..+.+-+.+|.|++=. +...+.+.+. ..+-|| |+-+ ...+|...-.. +++.+ .+.-+...|+++|-
T Consensus 92 DTarvls~y~D~iviR~~~~~~~~~~a~~-----s~vPVI-Na~~-~~~HPtQaL~Dl~Ti~e~~-~g~l~g~kia~vGD 163 (332)
T PRK04284 92 DTARVLGGMYDGIEYRGFSQRTVETLAEY-----SGVPVW-NGLT-DEDHPTQVLADFLTAKEHL-KKPYKDIKFTYVGD 163 (332)
T ss_pred HHHHHHHHhCCEEEEecCchHHHHHHHHh-----CCCCEE-ECCC-CCCChHHHHHHHHHHHHHh-cCCcCCcEEEEecC
Confidence 34555667799988744 3344444443 244455 5544 45666533221 22221 12345678999997
Q ss_pred ccccccHHHHHHHHHhCCCcEEEEEeCCc---cHHHH---HHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC
Q 009759 332 LGVEKSLDFLKRVMDRLPEARIAFIGDGP---YREEL---EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 332 l~~~Kg~~~li~a~~~l~~~~l~ivG~g~---~~~~l---~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
+. ..-..-++.++..+ ++.+.+++... ..+.+ ++.++..+..+. .. +++.+.+..||++....+
T Consensus 164 ~~-~~v~~Sl~~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~-~~--~d~~ea~~~aDvvy~~~w 233 (332)
T PRK04284 164 GR-NNVANALMQGAAIM-GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT-IT--DDIDEGVKGSDVIYTDVW 233 (332)
T ss_pred CC-cchHHHHHHHHHHc-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE-EE--cCHHHHhCCCCEEEECCc
Confidence 63 23466777888887 89999999532 22222 222222232222 11 578889999999988654
No 478
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.61 E-value=64 Score=32.02 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=50.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccc--hhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPL--SLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 196 (526)
..|.+++. ...+|-...+..+|.+++++|+.|.+++.+.-....+..+... .....+|+|..... .......-
T Consensus 101 psVimfVG----LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqn-A~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 101 PSVIMFVG----LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQN-ATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred CcEEEEEe----ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHH-hHhhCCeeEecccccchHHHHHHH
Confidence 35555543 3446677789999999999999999999765333222211110 01111222221111 11122334
Q ss_pred HHHHHhcCCCEEEECCC
Q 009759 197 ISEVARFKPDIIHASSP 213 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~ 213 (526)
.+..+++++|+|++...
T Consensus 176 v~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHhcCCcEEEEeCC
Confidence 45567789999999654
No 479
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=40.39 E-value=3.7e+02 Score=26.47 Aligned_cols=135 Identities=13% Similarity=0.180 Sum_probs=76.9
Q ss_pred HHHHHHhhcCcEEEeCCh--hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH---HHHHhhc-C-CCCCCcEEEEE
Q 009759 257 LVIKFLHRAADLTLVPSV--AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMRWRLS-N-GEPDKPLIVHV 329 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S~--~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~---~~~~~~~-~-~~~~~~~i~~v 329 (526)
-..+.+-+.+|.|++=.. ...+.+.++ ..+-|| |+-+-+..+|...-. .+.+.++ . +.-+...|+|+
T Consensus 92 Dtarvls~y~D~IviR~~~~~~~~~~a~~-----~~vPVI-Na~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~v 165 (338)
T PRK08192 92 DTARVLSTYSDVIAMRHPDAGSVKEFAEG-----SRVPVI-NGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMV 165 (338)
T ss_pred HHHHHHHHcCCEEEEeCCchhHHHHHHHh-----CCCCEE-ECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEE
Confidence 345666777999887443 333444433 233344 566544566653322 1222220 1 12356889999
Q ss_pred ecccccccHHHHHHHHHhCCCcEEEEEeCCcc--HHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC
Q 009759 330 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 330 G~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~--~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
|-....+-..-++.++....++.+++++...+ .+.+.+.++..+..+. .. +++.+.+..|||+.....
T Consensus 166 GD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~-~~--~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 166 GDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKIT-IT--DQLEGNLDKADILYLTRI 235 (338)
T ss_pred CcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEE-EE--cCHHHHHccCCEEEEcCc
Confidence 97755566777777776666889999995322 2333333332222221 11 577889999999988644
No 480
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=40.39 E-value=47 Score=30.27 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEEC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHAS 211 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~ 211 (526)
||.+..-..+++.|.++|++|+.++............ ..+.. ....+.-...+.+.++..++|.|+..
T Consensus 5 GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~~~--------~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 5 GATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK--LNVEF--------VIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH--TTEEE--------EESETTSHHHHHHHHHHHTESEEEEE
T ss_pred ccCCHHHHHHHHHHHHcCCcccccccccccccccccc--ceEEE--------EEeeccccccccccccccCceEEEEe
Confidence 7777888999999999999988776654322110000 01111 11112233466677777778876543
No 481
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.14 E-value=47 Score=32.49 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=26.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
..|||+++. .+..-..++..|.+.||+|.++..+.
T Consensus 3 ~~m~I~iIG----------~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 3 HGMRVAVLG----------AGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCeEEEEC----------cCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 358998883 23556678889999999999987643
No 482
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=40.14 E-value=70 Score=30.28 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.+..|++.|+.. ....|-.....+|+..|++.|+.|.++-.+.
T Consensus 100 ~~~~~vi~vts~---~~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 100 SEGRKALAVVSA---KSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred CCCCeEEEEECC---CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 344577677653 3345777789999999999999999996543
No 483
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=40.13 E-value=2.1e+02 Score=29.32 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=43.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc--CceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY--GAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+||+++. |+ .....+++++.++|++|.++........... ..... ..+... ..........+
T Consensus 3 ~~ililg---------~g-~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~---~~~~~~---~~~~~~d~~~l 66 (450)
T PRK06111 3 QKVLIAN---------RG-EIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAY---LIGGPR---VQESYLNLEKI 66 (450)
T ss_pred ceEEEEC---------Cc-HHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEE---EcCCCC---ccccccCHHHH
Confidence 5787773 22 3468889999999999999976443211110 00100 000000 00111223568
Q ss_pred HHHHHhcCCCEEEEC
Q 009759 197 ISEVARFKPDIIHAS 211 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~ 211 (526)
.+++++.++|+|+..
T Consensus 67 ~~~~~~~~id~I~p~ 81 (450)
T PRK06111 67 IEIAKKTGAEAIHPG 81 (450)
T ss_pred HHHHHHhCCCEEEeC
Confidence 888899999999874
No 484
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=40.11 E-value=57 Score=30.32 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.5
Q ss_pred cEEEEEeccCCCCccCch--HHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGY--KNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~--~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||++.|.. ..||. ...+-+|+..|++.|..|.++-..+
T Consensus 1 M~~iai~s-----~kGGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 1 MKVIAIVS-----PKGGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred CcEEEEec-----CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 67766654 23444 4557899999999999999997654
No 485
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=40.03 E-value=1e+02 Score=32.53 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=53.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHH-HCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLR-EMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~-~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.+|++++.+ ..+...+++.|. +.|.+|..+............... ..+. ..... -.-...+
T Consensus 293 Gkrv~I~gd----------~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~---~~~~----~~~~i-~~D~~el 354 (519)
T PRK02910 293 GKRVFVFGD----------ATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAA---KEYG----DEALI-TDDYLEV 354 (519)
T ss_pred CCEEEEEcC----------cHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHH---HhcC----CCeEE-ecCHHHH
Confidence 357766643 368899999998 799999766543221111100000 0000 00000 0012477
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
.+.+++.+||+|+.+.. ...++++.++|.+..
T Consensus 355 ~~~i~~~~PdliiG~~~------er~~a~~lgiP~~~i 386 (519)
T PRK02910 355 EDAIAEAAPELVLGTQM------ERHSAKRLGIPCAVI 386 (519)
T ss_pred HHHHHhcCCCEEEEcch------HHHHHHHcCCCEEEe
Confidence 78888999999998763 233567889997643
No 486
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=40.03 E-value=71 Score=28.49 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=27.2
Q ss_pred cEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|||++|..+ +..++.... +...++.+.+.|++|+++...
T Consensus 1 mkIl~I~GS---pr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGS---PRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcC---CCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 799888764 344565554 455666778899999988643
No 487
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.99 E-value=2.3e+02 Score=26.28 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=48.1
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+++... ............+.+++.+.|+++.++......... ....+.+.
T Consensus 1 ~Igvi~~~---~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~i~~ 52 (273)
T cd06310 1 KIALVPKG---TTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVA-------------------------GQVNLLEN 52 (273)
T ss_pred CeEEEecC---CCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHH-------------------------HHHHHHHH
Confidence 67777643 122334556677778889999999887532110000 01123333
Q ss_pred HHhcCCCEEEECCCchHH-HHHHHHHHhcCCCEEEE
Q 009759 200 VARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMS 234 (526)
Q Consensus 200 l~~~~pDiV~~~~~~~~~-~~~~~~~~~~~~p~v~~ 234 (526)
+...++|.|++....... ...+......++|+|+.
T Consensus 53 l~~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 53 AIARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEe
Confidence 444589988875432221 12233345678999875
No 488
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=39.95 E-value=2.3e+02 Score=27.81 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=49.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
.|+++|++... .......+.+.|.+.|.++.++......... ......+.+
T Consensus 25 ~kvlivtd~~~------~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~-----------------------~~~v~~~~~ 75 (332)
T cd08549 25 SKIMIVCGNNT------YKVAGKEIIERLESNNFTKEVLERDSLLIPD-----------------------EYELGEVLI 75 (332)
T ss_pred CcEEEEECCcH------HHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----------------------HHHHHHHHH
Confidence 47888876321 1222356777788888887764322110000 112234555
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
.+++ ++|+|++-+.....-.+-+++...++|+|..
T Consensus 76 ~~~~-~~d~IIaiGGGsv~D~aK~iA~~~gip~I~V 110 (332)
T cd08549 76 KLDK-DTEFLLGIGSGTIIDLVKFVSFKVGKPFISV 110 (332)
T ss_pred Hhhc-CCCEEEEECCcHHHHHHHHHHHHcCCCEEEe
Confidence 5666 9999999876554444444556678888753
No 489
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=39.85 E-value=60 Score=28.55 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=25.9
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||++.... +.+......+++.|++.|++|.++.+..
T Consensus 2 ~I~lgvtG------s~~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTG------SIAAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcC------HHHHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 56665541 2234456799999999999999998654
No 490
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=39.66 E-value=1.4e+02 Score=28.36 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=55.2
Q ss_pred cEEEEEecccccccHHHHHHHHHh-CCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 402 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~-l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e 402 (526)
..|+.+|-=.- | ..+.+.+.. .++++++.+.+. ..+..+++..+.++. ... +++.+++..+|+++..+..+
T Consensus 7 irIGIIG~G~I--G-~~~a~~L~~~~~~~el~aV~dr-~~~~a~~~a~~~g~~--~~~--~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 7 LRVAIAGLGAI--G-KAIAQALDRGLPGLTLSAVAVR-DPQRHADFIWGLRRP--PPV--VPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred eEEEEECccHH--H-HHHHHHHHhcCCCeEEEEEECC-CHHHHHHHHHhcCCC--ccc--CCHHHHhcCCCEEEECCCcH
Confidence 45666663111 1 234455554 467777755542 334444544443310 111 35566678899999877655
Q ss_pred CCcHHHHHHHHcCCcEEEeCCCC
Q 009759 403 TLGLVVLEAMSSGIPVVGVRAGG 425 (526)
Q Consensus 403 ~~~~~ilEAma~G~PvI~~~~gg 425 (526)
...-...+++..|++|++...+.
T Consensus 79 ~h~e~~~~aL~aGk~Vi~~s~ga 101 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIVLSVGA 101 (271)
T ss_pred HHHHHHHHHHHcCCcEEEecchh
Confidence 55556688899999999876553
No 491
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=39.65 E-value=35 Score=30.23 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=23.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||.++.. +..-.-++-.|++.||+|..+-.+.
T Consensus 1 M~I~ViGl----------GyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGL----------GYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE------------STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECC----------CcchHHHHHHHHhCCCEEEEEeCCh
Confidence 89988843 3445778999999999999986543
No 492
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=39.63 E-value=99 Score=30.34 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
||.+..-..+++.|.+.|++|..+...
T Consensus 7 GatGfIG~~l~~~L~~~G~~V~~~~r~ 33 (343)
T TIGR01472 7 GITGQDGSYLAEFLLEKGYEVHGLIRR 33 (343)
T ss_pred cCCCcHHHHHHHHHHHCCCEEEEEecC
Confidence 455556677899999999999988644
No 493
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=39.61 E-value=3.1e+02 Score=25.31 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEECCCch
Q 009759 136 YKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGI 215 (526)
Q Consensus 136 ~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~ 215 (526)
.......+.+++.+.|+.+.++........ .....+.+...++|.|++.....
T Consensus 14 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~---------------------------~~~~i~~~~~~~vdgii~~~~~~ 66 (268)
T cd06270 14 FGPLLSGVESVARKAGKHLIITAGHHSAEK---------------------------EREAIEFLLERRCDALILHSKAL 66 (268)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeCCCchHH---------------------------HHHHHHHHHHcCCCEEEEecCCC
Confidence 345567778888999999998764322100 01333444456899888765321
Q ss_pred HHHHHHHHHHhcCCCEEEEEec
Q 009759 216 MVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 216 ~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
... .+..+...++|+|+...+
T Consensus 67 ~~~-~~~~~~~~~ipvV~~~~~ 87 (268)
T cd06270 67 SDD-ELIELAAQVPPLVLINRH 87 (268)
T ss_pred CHH-HHHHHhhCCCCEEEEecc
Confidence 111 133345678998876543
No 494
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=39.55 E-value=3.7e+02 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=29.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
+|+++.. ...-|--.....|.+++.+.|+++-++.++..
T Consensus 150 ~V~vvGT----d~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqt 188 (339)
T COG3367 150 VVLVVGT----DCAVGKRTTALELREAAREEGIKAGFVATGQT 188 (339)
T ss_pred EEEEecc----ccccchhHHHHHHHHHHHHhCCccceEecCce
Confidence 5655533 23356667789999999999999999988764
No 495
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=39.48 E-value=1.4e+02 Score=30.84 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=51.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+|++++.+ ..+...+++.|.+.|.+|..+..... ....... . .. ... ..-...+.
T Consensus 311 gkrvai~~~----------~~~~~~la~~L~elG~~v~~~~~~~~-~~~~~~~---~-------~~-~i~--~~D~~~le 366 (455)
T PRK14476 311 GKRVAIAAE----------PDLLLALGSFLAEMGAEIVAAVTTTK-SPALEDL---P-------AE-EVL--IGDLEDLE 366 (455)
T ss_pred CCEEEEEeC----------HHHHHHHHHHHHHCCCEEEEEEeCCC-cHHHHhC---C-------cC-cEE--eCCHHHHH
Confidence 467776643 25889999999999999988776542 1111111 0 00 000 01122455
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.++ ++|+++.+... ..++++.++|++-
T Consensus 367 ~~~~--~~dliig~s~~------~~~a~~~gip~~~ 394 (455)
T PRK14476 367 ELAE--GADLLITNSHG------RQAAERLGIPLLR 394 (455)
T ss_pred Hhcc--CCCEEEECchh------HHHHHHcCCCEEE
Confidence 5554 89999998753 3356778999874
No 496
>PRK06444 prephenate dehydrogenase; Provisional
Probab=39.44 E-value=38 Score=30.42 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=21.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVM 155 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~ 155 (526)
|||++| ||.+..-..+++.|.+.||.|.
T Consensus 1 ~~~~ii---------G~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIII---------GKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEE---------ecCCcHHHHHHHHHHhCCCEEE
Confidence 688887 4445556678888999999986
No 497
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=39.42 E-value=72 Score=32.40 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=55.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCc-eeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGA-KLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
..+|++++.+ +.....+++.|.+.|.+|..+............. ..... .. . -..-.-...
T Consensus 273 ~Gkrv~i~gd----------~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~---~~----~-v~~~~d~~~ 334 (407)
T TIGR01279 273 RGKKIFFFGD----------NLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEG---GV----R-IVEQPDFHR 334 (407)
T ss_pred CCCEEEEECC----------chHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCC---CC----e-EEeCCCHHH
Confidence 4468877754 2688999999999999998887655432221110 00000 00 0 011123356
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
+.+.+++.+||+++.+..... ...+.|.|+...
T Consensus 335 l~~~i~~~~pDllig~~~~~~------pl~r~GfP~~dr 367 (407)
T TIGR01279 335 QLQRIRATRPDLVVTGLGTAN------PLEAQGFTTKWS 367 (407)
T ss_pred HHHHHHhcCCCEEecCccCCC------cHhhCCcceeEe
Confidence 778889999999999873211 123478885443
No 498
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=39.42 E-value=1.5e+02 Score=26.42 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHHHHhcCCC--EEEEC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPD--IIHAS 211 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD--iV~~~ 211 (526)
++.+.-...+.+.+.+.|.++.+.++....... .....+.+++++..++ +++.+
T Consensus 11 sp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~------------------------~a~~~l~~~i~~~~~~~~~liGS 66 (187)
T PF05728_consen 11 SPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPE------------------------EAIAQLEQLIEELKPENVVLIGS 66 (187)
T ss_pred CCCCHHHHHHHHHHHHhCCCceEECCCCCcCHH------------------------HHHHHHHHHHHhCCCCCeEEEEE
Confidence 555566788999999999888888765432111 1224666777777665 44444
Q ss_pred CCchHHHHHHHHHHhcCCCEEEEE
Q 009759 212 SPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
+ ..++.+..++.+.++|.|+..
T Consensus 67 S--lGG~~A~~La~~~~~~avLiN 88 (187)
T PF05728_consen 67 S--LGGFYATYLAERYGLPAVLIN 88 (187)
T ss_pred C--hHHHHHHHHHHHhCCCEEEEc
Confidence 4 445556677888899887643
No 499
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=39.39 E-value=3.6e+02 Score=25.96 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=49.0
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+...|+++.... ...-.......+.+++.+.|+++.+......... ....
T Consensus 59 ~~~~Igvi~~~~---~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~---------------------------~~~~ 108 (327)
T TIGR02417 59 RSRTIGLVIPDL---ENYSYARIAKELEQQCREAGYQLLIACSDDNPDQ---------------------------EKVV 108 (327)
T ss_pred CCceEEEEeCCC---CCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH---------------------------HHHH
Confidence 446788886431 1122345567788888899999988754321100 0123
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
.+.+...+.|-|++..........+......++|+|+.-.
T Consensus 109 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~ 148 (327)
T TIGR02417 109 IENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVALDR 148 (327)
T ss_pred HHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEEcc
Confidence 3444556889777653221011122233456899987543
No 500
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=39.16 E-value=60 Score=30.83 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
....+||++. ||++-.-..|++.|...||+|.++-..
T Consensus 24 p~~~lrI~it---------GgaGFIgSHLvdkLm~egh~VIa~Dn~ 60 (350)
T KOG1429|consen 24 PSQNLRILIT---------GGAGFIGSHLVDKLMTEGHEVIALDNY 60 (350)
T ss_pred CCCCcEEEEe---------cCcchHHHHHHHHHHhcCCeEEEEecc
Confidence 3445899766 677788889999999999999988643
Done!