Query 009759
Match_columns 526
No_of_seqs 542 out of 2074
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fro_A GLGA glycogen synthase; 100.0 6.2E-46 2.1E-50 380.6 30.0 373 117-497 1-432 (439)
2 3c48_A Predicted glycosyltrans 100.0 5.5E-44 1.9E-48 366.3 37.5 379 114-498 16-428 (438)
3 2r60_A Glycosyl transferase, g 100.0 3.5E-44 1.2E-48 374.0 33.9 382 115-502 4-466 (499)
4 3okp_A GDP-mannose-dependent a 100.0 2.9E-44 1E-48 362.9 32.3 360 116-499 2-383 (394)
5 2jjm_A Glycosyl transferase, g 100.0 1.4E-43 4.8E-48 358.2 36.7 366 118-500 13-390 (394)
6 2gek_A Phosphatidylinositol ma 100.0 2.2E-43 7.5E-48 358.0 28.3 361 114-499 16-387 (406)
7 3vue_A GBSS-I, granule-bound s 100.0 3.6E-43 1.2E-47 365.4 30.0 376 115-496 6-512 (536)
8 2qzs_A Glycogen synthase; glyc 100.0 1.4E-42 4.7E-47 360.7 29.6 373 119-499 1-480 (485)
9 1rzu_A Glycogen synthase 1; gl 100.0 3.4E-43 1.2E-47 365.2 24.6 372 119-498 1-478 (485)
10 3oy2_A Glycosyltransferase B73 100.0 1.2E-41 4.1E-46 346.2 27.5 349 119-502 1-397 (413)
11 2iuy_A Avigt4, glycosyltransfe 100.0 1.4E-41 4.8E-46 336.8 24.8 310 118-498 3-338 (342)
12 3s28_A Sucrose synthase 1; gly 100.0 3.9E-40 1.3E-44 353.0 31.7 375 116-496 276-770 (816)
13 2x6q_A Trehalose-synthase TRET 100.0 1.5E-40 5E-45 338.6 25.7 352 116-496 38-415 (416)
14 2iw1_A Lipopolysaccharide core 100.0 1.8E-41 6.2E-46 340.0 15.4 357 119-496 1-372 (374)
15 2x0d_A WSAF; GT4 family, trans 100.0 1.3E-37 4.3E-42 314.5 13.5 348 115-497 43-411 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 5.4E-34 1.8E-38 284.7 25.2 327 118-495 6-357 (364)
17 2hy7_A Glucuronosyltransferase 100.0 5.5E-35 1.9E-39 295.4 15.4 328 115-495 11-379 (406)
18 3beo_A UDP-N-acetylglucosamine 100.0 5E-33 1.7E-37 278.8 22.2 350 115-492 5-373 (375)
19 1vgv_A UDP-N-acetylglucosamine 100.0 5E-33 1.7E-37 279.8 16.6 355 119-498 1-379 (384)
20 2vsy_A XCC0866; transferase, g 100.0 3.1E-31 1.1E-35 280.7 24.6 331 115-499 202-563 (568)
21 3nb0_A Glycogen [starch] synth 100.0 2E-29 7E-34 257.8 23.2 293 203-501 180-639 (725)
22 1uqt_A Alpha, alpha-trehalose- 100.0 7.8E-29 2.7E-33 253.2 22.3 275 204-495 123-454 (482)
23 1v4v_A UDP-N-acetylglucosamine 100.0 2.3E-27 7.8E-32 237.8 24.7 345 119-496 6-365 (376)
24 3t5t_A Putative glycosyltransf 100.0 8.2E-27 2.8E-31 235.2 23.8 275 204-491 149-470 (496)
25 2bfw_A GLGA glycogen synthase; 100.0 2.7E-27 9.2E-32 215.2 17.9 180 294-479 2-200 (200)
26 3qhp_A Type 1 capsular polysac 99.9 4.4E-27 1.5E-31 207.0 15.9 158 323-486 2-166 (166)
27 3rhz_A GTF3, nucleotide sugar 99.9 3.3E-25 1.1E-29 216.0 26.6 317 117-495 9-337 (339)
28 2xci_A KDO-transferase, 3-deox 99.9 3.1E-26 1E-30 228.5 19.6 290 134-476 50-361 (374)
29 2f9f_A First mannosyl transfer 99.9 7.1E-25 2.4E-29 195.0 13.3 148 320-471 20-174 (177)
30 3dzc_A UDP-N-acetylglucosamine 99.9 4.5E-24 1.5E-28 214.3 17.8 343 118-488 25-391 (396)
31 3ot5_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.8E-28 211.6 20.1 344 117-487 26-388 (403)
32 3otg_A CALG1; calicheamicin, T 99.9 2.2E-23 7.5E-28 211.4 21.6 341 113-493 15-408 (412)
33 3s2u_A UDP-N-acetylglucosamine 99.9 2.5E-22 8.5E-27 199.5 28.1 325 118-488 2-352 (365)
34 2iyf_A OLED, oleandomycin glyc 99.9 8.8E-22 3E-26 200.7 19.9 346 118-497 7-403 (430)
35 4fzr_A SSFS6; structural genom 99.9 2.7E-21 9.2E-26 195.1 15.2 336 114-488 11-396 (398)
36 3ia7_A CALG4; glycosysltransfe 99.8 8.6E-20 2.9E-24 184.2 21.6 343 119-493 5-398 (402)
37 3oti_A CALG3; calicheamicin, T 99.8 5.5E-20 1.9E-24 185.4 17.0 333 115-491 17-395 (398)
38 3tsa_A SPNG, NDP-rhamnosyltran 99.8 1.9E-20 6.5E-25 188.4 13.3 335 118-488 1-384 (391)
39 3rsc_A CALG2; TDP, enediyne, s 99.8 2.2E-19 7.5E-24 182.1 20.6 346 115-493 17-413 (415)
40 2p6p_A Glycosyl transferase; X 99.8 5.6E-18 1.9E-22 169.9 20.8 329 119-488 1-375 (384)
41 4hwg_A UDP-N-acetylglucosamine 99.8 2E-18 6.7E-23 171.8 13.0 343 118-488 9-371 (385)
42 2yjn_A ERYCIII, glycosyltransf 99.7 2.4E-16 8.2E-21 160.9 17.3 157 322-492 267-434 (441)
43 2iya_A OLEI, oleandomycin glyc 99.7 4.2E-15 1.4E-19 150.9 22.5 338 118-488 12-417 (424)
44 3h4t_A Glycosyltransferase GTF 99.6 2.9E-14 9.8E-19 143.7 21.6 344 119-488 1-378 (404)
45 4amg_A Snogd; transferase, pol 99.6 2.6E-15 9E-20 151.1 13.4 341 115-488 19-396 (400)
46 1iir_A Glycosyltransferase GTF 99.6 2.1E-13 7E-18 138.0 21.2 137 322-474 238-382 (415)
47 1rrv_A Glycosyltransferase GTF 99.5 8.4E-13 2.9E-17 133.5 19.3 137 322-474 237-383 (416)
48 3q3e_A HMW1C-like glycosyltran 99.5 1.3E-12 4.6E-17 133.7 20.2 274 193-502 338-630 (631)
49 1l5w_A Maltodextrin phosphoryl 99.4 2.9E-12 1E-16 133.8 14.1 286 204-496 299-731 (796)
50 2c4m_A Glycogen phosphorylase; 99.4 1.1E-12 3.8E-17 137.0 10.8 233 257-497 394-721 (796)
51 2o6l_A UDP-glucuronosyltransfe 99.3 5.1E-12 1.8E-16 110.8 10.2 134 321-468 20-162 (170)
52 2gj4_A Glycogen phosphorylase, 99.3 4.4E-11 1.5E-15 125.5 17.5 192 257-450 429-707 (824)
53 3hbm_A UDP-sugar hydrolase; PS 99.1 9.5E-10 3.3E-14 103.5 16.4 248 119-423 1-252 (282)
54 4gyw_A UDP-N-acetylglucosamine 99.0 1.2E-07 4.1E-12 101.7 27.1 178 320-501 520-711 (723)
55 2acv_A Triterpene UDP-glucosyl 99.0 5.2E-07 1.8E-11 91.9 29.6 330 117-466 8-432 (463)
56 2vch_A Hydroquinone glucosyltr 98.9 3.6E-06 1.2E-10 86.0 32.3 326 117-459 5-428 (480)
57 2pq6_A UDP-glucuronosyl/UDP-gl 98.9 3.4E-07 1.2E-11 93.9 24.2 142 322-475 295-453 (482)
58 2c1x_A UDP-glucose flavonoid 3 98.8 2.6E-07 8.8E-12 93.9 21.0 142 321-475 270-426 (456)
59 3hbf_A Flavonoid 3-O-glucosylt 98.8 1.1E-06 3.7E-11 88.7 23.2 337 118-474 13-427 (454)
60 1psw_A ADP-heptose LPS heptosy 98.5 1.6E-05 5.6E-10 77.6 22.4 105 312-421 170-286 (348)
61 3l7i_A Teichoic acid biosynthe 98.1 0.00013 4.5E-09 78.7 19.1 255 224-495 432-718 (729)
62 2gt1_A Lipopolysaccharide hept 97.9 0.002 6.9E-08 62.0 23.1 134 322-460 178-322 (326)
63 3tov_A Glycosyl transferase fa 97.9 0.0017 5.8E-08 63.2 22.6 260 115-423 5-288 (349)
64 1xv5_A AGT, DNA alpha-glucosyl 97.9 0.011 3.6E-07 50.9 34.4 332 118-475 1-382 (401)
65 2jzc_A UDP-N-acetylglucosamine 97.0 0.00047 1.6E-08 61.9 4.2 46 373-424 115-161 (224)
66 1ygp_A Yeast glycogen phosphor 96.1 0.024 8.4E-07 59.7 10.5 122 321-443 598-760 (879)
67 2lpm_A Two-component response 93.0 0.048 1.6E-06 43.8 2.5 80 113-233 3-84 (123)
68 4g65_A TRK system potassium up 91.8 6.4 0.00022 39.3 17.0 269 117-423 2-333 (461)
69 3tqr_A Phosphoribosylglycinami 91.1 0.61 2.1E-05 41.2 7.6 91 115-214 2-93 (215)
70 3auf_A Glycinamide ribonucleot 89.4 1.6 5.5E-05 39.0 9.0 89 116-213 20-110 (229)
71 3to5_A CHEY homolog; alpha(5)b 88.9 2.3 7.7E-05 34.4 8.9 81 114-235 8-94 (134)
72 2ywr_A Phosphoribosylglycinami 87.8 1.8 6.1E-05 38.3 8.2 86 119-213 2-89 (216)
73 3av3_A Phosphoribosylglycinami 87.6 1.8 6.3E-05 38.1 8.1 87 119-214 4-92 (212)
74 1fmt_A Methionyl-tRNA FMet for 86.7 3.9 0.00013 38.5 10.2 80 116-213 1-90 (314)
75 2d1p_A TUSD, hypothetical UPF0 86.4 4.3 0.00015 33.0 9.1 45 116-162 10-55 (140)
76 3kcq_A Phosphoribosylglycinami 86.2 1.5 5.2E-05 38.7 6.7 86 115-214 5-92 (215)
77 3h75_A Periplasmic sugar-bindi 85.6 10 0.00034 35.9 13.1 227 118-384 3-245 (350)
78 3qk7_A Transcriptional regulat 85.2 21 0.00072 32.6 14.7 187 116-359 4-196 (294)
79 3h5i_A Response regulator/sens 84.8 13 0.00045 29.4 12.4 108 350-460 5-124 (140)
80 3da8_A Probable 5'-phosphoribo 84.4 1.4 4.6E-05 39.0 5.5 88 116-213 10-98 (215)
81 3q0i_A Methionyl-tRNA formyltr 84.3 3.6 0.00012 38.7 8.7 81 116-214 5-95 (318)
82 3dqp_A Oxidoreductase YLBE; al 83.3 4 0.00014 35.8 8.4 35 119-162 1-35 (219)
83 3ic5_A Putative saccharopine d 83.2 3 0.0001 32.2 6.7 92 118-232 5-97 (118)
84 3o74_A Fructose transport syst 83.1 16 0.00056 32.8 12.8 183 119-360 3-190 (272)
85 3sc6_A DTDP-4-dehydrorhamnose 83.1 2.7 9.4E-05 38.7 7.5 33 118-159 5-37 (287)
86 3jte_A Response regulator rece 82.9 8.5 0.00029 30.6 9.7 108 351-461 4-124 (143)
87 2hy5_A Putative sulfurtransfer 82.7 2.3 7.9E-05 34.1 5.9 42 119-162 1-43 (130)
88 3dhn_A NAD-dependent epimerase 82.6 11 0.00036 33.1 11.0 34 119-161 5-38 (227)
89 4ds3_A Phosphoribosylglycinami 82.5 3.3 0.00011 36.3 7.1 88 118-214 7-96 (209)
90 4b4o_A Epimerase family protei 82.3 1.5 5E-05 40.9 5.2 34 119-161 1-34 (298)
91 3grc_A Sensor protein, kinase; 82.2 15 0.00052 28.9 11.0 108 350-460 6-127 (140)
92 3g1w_A Sugar ABC transporter; 82.2 27 0.00092 32.0 14.2 221 117-392 3-233 (305)
93 3egc_A Putative ribose operon 81.8 9.6 0.00033 34.9 10.8 91 115-236 5-95 (291)
94 2bw0_A 10-FTHFDH, 10-formyltet 81.6 5.7 0.00019 37.6 9.0 86 116-214 20-109 (329)
95 1jkx_A GART;, phosphoribosylgl 81.6 4.5 0.00015 35.6 7.8 87 119-214 1-89 (212)
96 3fet_A Electron transfer flavo 81.5 18 0.0006 30.3 11.1 101 117-238 2-103 (166)
97 3dbi_A Sugar-binding transcrip 80.9 21 0.00073 33.4 13.1 94 115-236 58-151 (338)
98 1kjn_A MTH0777; hypotethical p 80.7 3.5 0.00012 33.4 5.9 39 118-159 6-44 (157)
99 3hzh_A Chemotaxis response reg 79.8 9.8 0.00033 31.0 9.1 106 351-459 37-156 (157)
100 3kke_A LACI family transcripti 79.8 21 0.00073 32.8 12.5 92 115-237 12-103 (303)
101 3tqq_A Methionyl-tRNA formyltr 79.4 8.3 0.00028 36.2 9.2 80 117-214 1-90 (314)
102 3rfo_A Methionyl-tRNA formyltr 79.2 8.2 0.00028 36.3 9.1 79 118-214 4-92 (317)
103 1kjq_A GART 2, phosphoribosylg 79.1 5.1 0.00018 38.9 8.2 77 114-213 7-83 (391)
104 4gi5_A Quinone reductase; prot 79.0 3.1 0.00011 38.4 6.1 44 114-160 18-62 (280)
105 3nrb_A Formyltetrahydrofolate 78.9 15 0.0005 34.0 10.6 86 116-213 86-174 (287)
106 3gt7_A Sensor protein; structu 78.9 9.8 0.00034 30.9 8.8 80 115-236 4-89 (154)
107 3pdi_B Nitrogenase MOFE cofact 78.4 13 0.00045 36.9 10.9 86 118-233 313-398 (458)
108 2pln_A HP1043, response regula 78.3 20 0.00067 28.1 10.3 35 114-157 14-48 (137)
109 3hv2_A Response regulator/HD d 78.3 14 0.00049 29.7 9.6 56 115-212 11-66 (153)
110 1meo_A Phosophoribosylglycinam 78.2 4.4 0.00015 35.6 6.5 86 119-213 1-88 (209)
111 3eod_A Protein HNR; response r 78.0 19 0.00065 27.8 10.1 79 116-236 5-87 (130)
112 3n0v_A Formyltetrahydrofolate 78.0 10 0.00036 34.9 9.3 114 115-242 87-202 (286)
113 3gl9_A Response regulator; bet 77.9 17 0.00059 27.9 9.6 108 352-459 4-121 (122)
114 3dfi_A Pseudoaglycone deacetyl 77.7 16 0.00056 33.3 10.6 40 118-162 7-46 (270)
115 3d7l_A LIN1944 protein; APC893 77.4 5 0.00017 34.6 6.8 34 117-160 2-35 (202)
116 3grc_A Sensor protein, kinase; 77.1 16 0.00055 28.7 9.5 54 117-212 5-58 (140)
117 2ixd_A LMBE-related protein; h 76.8 10 0.00034 34.1 8.7 91 118-213 3-106 (242)
118 3nhm_A Response regulator; pro 76.7 24 0.00082 27.3 12.9 109 351-460 5-122 (133)
119 2zay_A Response regulator rece 76.7 12 0.00041 29.9 8.6 107 350-459 8-127 (147)
120 3k4h_A Putative transcriptiona 76.5 23 0.00077 32.2 11.5 95 115-237 5-101 (292)
121 3kht_A Response regulator; PSI 76.4 22 0.00074 28.1 10.2 80 117-236 4-89 (144)
122 2pln_A HP1043, response regula 76.3 15 0.00051 28.8 9.0 63 392-460 63-133 (137)
123 3dfz_A SIRC, precorrin-2 dehyd 76.1 23 0.0008 31.2 10.7 139 350-493 54-202 (223)
124 3fwz_A Inner membrane protein 76.1 14 0.00047 29.7 8.8 127 118-283 7-136 (140)
125 2pn1_A Carbamoylphosphate synt 76.0 6.9 0.00024 36.8 7.9 76 117-212 3-80 (331)
126 3gt7_A Sensor protein; structu 75.9 19 0.00065 29.0 9.8 107 350-459 7-126 (154)
127 1qkk_A DCTD, C4-dicarboxylate 75.7 21 0.00072 28.7 10.0 108 351-461 4-122 (155)
128 1k68_A Phytochrome response re 75.5 26 0.0009 27.2 10.7 106 351-459 3-130 (140)
129 2pzm_A Putative nucleotide sug 75.5 9.5 0.00033 35.8 8.7 39 114-161 16-54 (330)
130 3nbm_A PTS system, lactose-spe 75.4 21 0.00071 27.4 8.9 40 116-160 4-43 (108)
131 3lou_A Formyltetrahydrofolate 75.3 14 0.00047 34.2 9.3 113 116-242 93-207 (292)
132 4id9_A Short-chain dehydrogena 75.2 5.9 0.0002 37.5 7.2 39 114-161 15-53 (347)
133 2rdm_A Response regulator rece 74.9 27 0.00091 26.9 10.4 79 117-237 4-88 (132)
134 3miz_A Putative transcriptiona 74.9 13 0.00044 34.2 9.4 207 115-380 10-233 (301)
135 3kjx_A Transcriptional regulat 74.6 56 0.0019 30.5 14.6 90 115-235 65-154 (344)
136 2rdm_A Response regulator rece 74.6 26 0.00088 27.0 10.0 109 350-460 5-123 (132)
137 4f3y_A DHPR, dihydrodipicolina 74.6 2.8 9.7E-05 38.5 4.5 45 383-427 65-109 (272)
138 3jy6_A Transcriptional regulat 74.5 25 0.00085 31.7 11.1 89 116-236 5-93 (276)
139 3cg0_A Response regulator rece 74.5 24 0.00083 27.5 9.9 80 115-236 6-90 (140)
140 3t6k_A Response regulator rece 74.4 19 0.00064 28.3 9.1 110 351-460 5-124 (136)
141 1q74_A 1D-MYO-inosityl 2-aceta 74.4 19 0.00067 33.4 10.3 40 118-162 4-43 (303)
142 3enk_A UDP-glucose 4-epimerase 74.3 5 0.00017 37.9 6.4 37 116-161 3-39 (341)
143 2bln_A Protein YFBG; transfera 74.3 9.6 0.00033 35.6 8.1 77 119-213 1-84 (305)
144 2qxy_A Response regulator; reg 74.3 10 0.00036 30.0 7.6 54 117-212 3-56 (142)
145 3h5i_A Response regulator/sens 74.2 25 0.00087 27.6 10.0 79 117-237 4-87 (140)
146 3k9c_A Transcriptional regulat 74.1 51 0.0018 29.8 14.3 182 115-360 9-195 (289)
147 3kcn_A Adenylate cyclase homol 74.0 23 0.00078 28.3 9.8 109 351-463 5-126 (151)
148 1hdo_A Biliverdin IX beta redu 73.7 30 0.001 29.3 11.0 34 119-161 4-37 (206)
149 3dff_A Teicoplanin pseudoaglyc 73.6 23 0.00079 32.4 10.4 40 118-162 7-46 (273)
150 3cg4_A Response regulator rece 73.4 31 0.0011 27.0 11.8 107 350-459 7-126 (142)
151 3g85_A Transcriptional regulat 73.4 32 0.0011 31.2 11.6 92 115-236 8-99 (289)
152 3hdv_A Response regulator; PSI 73.3 24 0.00082 27.5 9.5 109 350-461 7-128 (136)
153 3ijp_A DHPR, dihydrodipicolina 73.2 3.7 0.00013 38.0 4.8 44 383-426 80-123 (288)
154 3f6c_A Positive transcription 73.2 30 0.001 26.7 10.5 78 118-236 1-82 (134)
155 2q62_A ARSH; alpha/beta, flavo 72.8 9.4 0.00032 34.4 7.5 45 113-160 29-74 (247)
156 3m2p_A UDP-N-acetylglucosamine 72.8 18 0.00063 33.4 10.0 34 118-160 2-35 (311)
157 3lte_A Response regulator; str 72.7 22 0.00075 27.5 9.1 110 351-460 7-125 (132)
158 3obi_A Formyltetrahydrofolate 72.7 17 0.00057 33.6 9.2 113 116-242 87-202 (288)
159 1l5x_A SurviVal protein E; str 72.6 26 0.00089 32.1 10.3 37 119-162 1-37 (280)
160 3i42_A Response regulator rece 72.4 24 0.00081 27.1 9.2 53 118-212 3-55 (127)
161 2iks_A DNA-binding transcripti 72.3 37 0.0013 30.8 11.9 92 115-236 17-108 (293)
162 2qzj_A Two-component response 72.3 22 0.00075 27.9 9.0 107 350-459 4-120 (136)
163 3ilh_A Two component response 72.0 28 0.00095 27.4 9.8 112 351-462 10-141 (146)
164 3hdg_A Uncharacterized protein 72.0 17 0.00057 28.5 8.3 55 116-212 5-59 (137)
165 4dim_A Phosphoribosylglycinami 72.0 4.6 0.00016 39.4 5.6 72 117-211 6-78 (403)
166 3hzh_A Chemotaxis response reg 72.0 30 0.001 27.9 10.1 81 115-236 33-119 (157)
167 3nhm_A Response regulator; pro 71.7 24 0.00082 27.3 9.2 42 195-236 38-85 (133)
168 2dkn_A 3-alpha-hydroxysteroid 71.6 9.5 0.00032 34.1 7.4 28 134-161 8-35 (255)
169 3zqu_A Probable aromatic acid 71.4 7.3 0.00025 34.1 6.1 40 116-161 2-41 (209)
170 1jg7_A BGT, DNA beta-glucosylt 71.2 51 0.0017 28.6 29.9 142 322-476 180-332 (351)
171 1n2s_A DTDP-4-, DTDP-glucose o 71.1 15 0.00051 33.7 8.8 32 119-160 1-32 (299)
172 3cg4_A Response regulator rece 70.9 19 0.00064 28.3 8.4 56 115-212 4-59 (142)
173 1dcf_A ETR1 protein; beta-alph 70.7 8.7 0.0003 30.2 6.2 111 350-460 7-129 (136)
174 1uan_A Hypothetical protein TT 70.7 16 0.00056 32.3 8.5 87 119-213 2-104 (227)
175 3lyu_A Putative hydrogenase; t 70.6 6.2 0.00021 32.1 5.2 109 119-236 19-139 (142)
176 2rjn_A Response regulator rece 70.5 39 0.0013 26.9 10.5 109 350-461 7-127 (154)
177 2qr3_A Two-component system re 70.4 21 0.0007 28.0 8.5 53 118-212 3-55 (140)
178 3uuw_A Putative oxidoreductase 70.0 7.9 0.00027 36.1 6.6 92 323-422 6-97 (308)
179 3s5p_A Ribose 5-phosphate isom 70.0 46 0.0016 27.6 10.3 90 115-237 18-109 (166)
180 3crn_A Response regulator rece 69.9 34 0.0012 26.5 9.6 109 351-459 4-120 (132)
181 3cg0_A Response regulator rece 69.8 37 0.0013 26.4 10.2 107 350-459 9-127 (140)
182 1dbw_A Transcriptional regulat 69.6 35 0.0012 26.0 10.6 107 350-459 3-120 (126)
183 3n53_A Response regulator rece 69.6 38 0.0013 26.4 11.9 107 351-461 4-123 (140)
184 3lp8_A Phosphoribosylamine-gly 69.4 8.9 0.0003 38.0 7.1 95 113-232 16-111 (442)
185 3cfy_A Putative LUXO repressor 69.2 39 0.0013 26.4 10.2 105 352-459 6-121 (137)
186 3llv_A Exopolyphosphatase-rela 69.2 22 0.00076 28.3 8.4 24 138-161 16-39 (141)
187 3lua_A Response regulator rece 69.2 23 0.0008 27.7 8.6 32 117-157 3-35 (140)
188 4dzz_A Plasmid partitioning pr 69.2 16 0.00054 31.3 8.0 40 119-161 1-40 (206)
189 1fjh_A 3alpha-hydroxysteroid d 69.1 11 0.00037 33.9 7.2 35 119-161 1-35 (257)
190 3lua_A Response regulator rece 69.0 8.1 0.00028 30.6 5.7 108 351-461 5-128 (140)
191 3l49_A ABC sugar (ribose) tran 69.0 33 0.0011 31.0 10.7 91 116-236 3-94 (291)
192 2rjn_A Response regulator rece 69.0 30 0.001 27.7 9.4 32 117-157 6-37 (154)
193 2gkg_A Response regulator homo 68.9 23 0.0008 26.9 8.4 30 119-157 6-35 (127)
194 3qvo_A NMRA family protein; st 68.9 30 0.001 30.4 10.0 28 134-161 30-58 (236)
195 2rgy_A Transcriptional regulat 68.9 62 0.0021 29.2 12.6 89 116-235 6-97 (290)
196 3la6_A Tyrosine-protein kinase 68.8 18 0.00061 33.4 8.6 44 116-162 89-132 (286)
197 3mcu_A Dipicolinate synthase, 68.8 6.1 0.00021 34.5 5.0 39 117-162 4-44 (207)
198 3abi_A Putative uncharacterize 68.8 8 0.00027 37.2 6.5 96 113-233 11-106 (365)
199 3heb_A Response regulator rece 68.8 28 0.00095 27.8 9.1 105 351-458 5-133 (152)
200 3c3m_A Response regulator rece 68.7 35 0.0012 26.6 9.6 110 351-460 4-123 (138)
201 3i42_A Response regulator rece 68.7 28 0.00097 26.6 8.9 107 351-460 4-122 (127)
202 3hv2_A Response regulator/HD d 68.7 43 0.0015 26.7 11.5 107 351-460 15-133 (153)
203 3h1g_A Chemotaxis protein CHEY 68.7 26 0.00089 27.0 8.7 111 350-460 5-127 (129)
204 1jx7_A Hypothetical protein YC 68.6 7.4 0.00025 30.1 5.1 42 119-162 2-45 (117)
205 3lqk_A Dipicolinate synthase s 68.0 7 0.00024 34.0 5.2 40 116-162 5-46 (201)
206 3to5_A CHEY homolog; alpha(5)b 67.9 26 0.0009 27.9 8.4 110 350-459 12-132 (134)
207 3i6i_A Putative leucoanthocyan 67.9 15 0.0005 34.8 8.2 99 118-233 10-116 (346)
208 3vot_A L-amino acid ligase, BL 67.8 19 0.00065 35.3 9.1 82 115-212 2-83 (425)
209 2qr3_A Two-component system re 67.8 40 0.0014 26.2 9.8 107 351-460 4-126 (140)
210 3cnb_A DNA-binding response re 67.8 37 0.0013 26.5 9.6 108 350-460 8-130 (143)
211 3r0j_A Possible two component 67.7 38 0.0013 30.0 10.6 80 115-236 20-103 (250)
212 1jbe_A Chemotaxis protein CHEY 67.6 33 0.0011 26.2 9.1 106 351-459 5-124 (128)
213 1qkk_A DCTD, C4-dicarboxylate 67.5 21 0.0007 28.8 8.1 32 117-157 2-33 (155)
214 3o1l_A Formyltetrahydrofolate 67.4 17 0.00057 33.8 8.0 86 116-213 103-190 (302)
215 3hdg_A Uncharacterized protein 67.1 34 0.0012 26.6 9.1 107 351-460 8-125 (137)
216 3ew7_A LMO0794 protein; Q8Y8U8 66.9 6.4 0.00022 34.3 5.0 34 119-161 1-34 (221)
217 1dbq_A Purine repressor; trans 66.9 72 0.0025 28.6 13.2 91 116-237 5-96 (289)
218 2j48_A Two-component sensor ki 66.8 20 0.00068 26.8 7.5 105 352-459 3-117 (119)
219 3m6m_D Sensory/regulatory prot 66.7 45 0.0016 26.2 10.9 112 349-460 13-136 (143)
220 2p2s_A Putative oxidoreductase 66.6 19 0.00065 33.9 8.6 93 117-233 3-95 (336)
221 1mb3_A Cell division response 66.5 27 0.00092 26.5 8.3 105 352-459 3-120 (124)
222 3gl9_A Response regulator; bet 66.5 41 0.0014 25.6 9.5 52 119-212 3-54 (122)
223 3m2t_A Probable dehydrogenase; 66.4 13 0.00045 35.5 7.5 39 195-233 59-97 (359)
224 3euw_A MYO-inositol dehydrogen 66.3 31 0.001 32.6 10.1 90 324-422 5-96 (344)
225 2hy5_B Intracellular sulfur ox 66.0 7.3 0.00025 31.4 4.6 43 118-162 4-47 (136)
226 3ty2_A 5'-nucleotidase SURE; s 66.0 6.9 0.00024 35.3 4.9 41 115-162 8-48 (261)
227 3h2s_A Putative NADH-flavin re 65.7 6.7 0.00023 34.3 4.9 34 119-161 1-34 (224)
228 3rqi_A Response regulator prot 65.5 29 0.001 29.0 8.9 77 117-235 6-86 (184)
229 2q1w_A Putative nucleotide sug 65.5 21 0.00071 33.5 8.6 28 134-161 28-55 (333)
230 2yrx_A Phosphoribosylglycinami 65.5 22 0.00077 35.1 9.2 93 115-232 18-111 (451)
231 3cio_A ETK, tyrosine-protein k 65.5 28 0.00096 32.2 9.3 43 116-161 101-143 (299)
232 3mc3_A DSRE/DSRF-like family p 65.4 13 0.00045 29.7 6.1 44 117-162 14-57 (134)
233 4hkt_A Inositol 2-dehydrogenas 65.4 23 0.00078 33.3 8.9 89 324-422 4-94 (331)
234 1rcu_A Conserved hypothetical 65.4 4.9 0.00017 34.7 3.7 71 386-458 113-193 (195)
235 2ip4_A PURD, phosphoribosylami 65.2 23 0.0008 34.5 9.2 88 119-232 1-89 (417)
236 4egb_A DTDP-glucose 4,6-dehydr 65.1 48 0.0016 31.0 11.2 35 116-159 22-56 (346)
237 4e7p_A Response regulator; DNA 65.0 50 0.0017 26.1 10.5 75 383-460 56-140 (150)
238 2dwc_A PH0318, 433AA long hypo 64.9 12 0.0004 36.9 6.9 75 116-213 17-91 (433)
239 3e48_A Putative nucleoside-dip 64.8 36 0.0012 30.9 10.0 35 119-162 1-36 (289)
240 1lss_A TRK system potassium up 64.7 7.5 0.00026 30.9 4.6 33 118-160 4-36 (140)
241 1srr_A SPO0F, sporulation resp 64.7 43 0.0015 25.3 9.2 109 351-459 4-120 (124)
242 3t6k_A Response regulator rece 64.7 48 0.0016 25.8 10.0 53 118-212 4-56 (136)
243 3u7q_B Nitrogenase molybdenum- 64.6 30 0.001 35.0 9.9 103 118-233 364-468 (523)
244 3cz5_A Two-component response 64.6 43 0.0015 26.6 9.5 79 117-236 4-87 (153)
245 3m6m_D Sensory/regulatory prot 64.5 35 0.0012 26.9 8.8 34 115-157 11-44 (143)
246 3kht_A Response regulator; PSI 64.5 42 0.0014 26.3 9.3 107 350-459 5-127 (144)
247 2lpm_A Two-component response 64.2 20 0.00069 28.1 6.9 106 351-459 9-121 (123)
248 3pdi_A Nitrogenase MOFE cofact 64.1 5.7 0.00019 39.9 4.4 92 118-233 332-424 (483)
249 3lte_A Response regulator; str 64.0 16 0.00054 28.4 6.4 55 116-212 4-58 (132)
250 3eod_A Protein HNR; response r 64.0 38 0.0013 26.0 8.7 108 350-460 7-126 (130)
251 1s8n_A Putative antiterminator 63.9 64 0.0022 27.3 11.0 109 351-462 14-133 (205)
252 3gyb_A Transcriptional regulat 63.9 50 0.0017 29.6 10.8 42 116-160 3-44 (280)
253 1k66_A Phytochrome response re 63.9 48 0.0016 25.9 9.6 106 351-459 7-137 (149)
254 3e8x_A Putative NAD-dependent 63.8 8 0.00027 34.3 5.0 38 115-161 18-55 (236)
255 2nzw_A Alpha1,3-fucosyltransfe 63.7 40 0.0014 32.2 9.9 81 383-468 223-308 (371)
256 2gkg_A Response regulator homo 63.6 21 0.0007 27.2 7.0 106 351-460 6-125 (127)
257 2p5y_A UDP-glucose 4-epimerase 63.5 21 0.0007 33.0 8.1 26 134-159 7-32 (311)
258 4dad_A Putative pilus assembly 62.9 13 0.00046 29.5 5.9 66 391-459 67-140 (146)
259 4ew6_A D-galactose-1-dehydroge 62.8 31 0.0011 32.4 9.3 85 117-233 24-110 (330)
260 2pk3_A GDP-6-deoxy-D-LYXO-4-he 62.6 19 0.00065 33.4 7.7 28 134-161 19-46 (321)
261 3rc1_A Sugar 3-ketoreductase; 62.4 18 0.00062 34.4 7.6 93 322-422 26-120 (350)
262 2zay_A Response regulator rece 62.0 21 0.00073 28.3 7.0 79 116-236 6-90 (147)
263 3eag_A UDP-N-acetylmuramate:L- 61.9 18 0.00061 34.1 7.3 35 118-161 4-38 (326)
264 1ys7_A Transcriptional regulat 61.9 53 0.0018 28.4 10.2 78 117-236 6-87 (233)
265 3tem_A Ribosyldihydronicotinam 61.6 11 0.00037 33.5 5.3 41 118-161 1-42 (228)
266 3jte_A Response regulator rece 61.6 55 0.0019 25.5 9.9 31 118-157 3-33 (143)
267 3u7q_A Nitrogenase molybdenum- 61.4 12 0.0004 37.7 6.1 92 119-233 349-440 (492)
268 3cea_A MYO-inositol 2-dehydrog 61.4 54 0.0018 30.8 10.8 92 322-422 7-102 (346)
269 2r25_B Osmosensing histidine p 61.4 46 0.0016 25.8 8.8 106 351-459 3-126 (133)
270 3p9x_A Phosphoribosylglycinami 61.4 26 0.0009 30.5 7.6 87 119-214 3-91 (211)
271 2pl1_A Transcriptional regulat 61.1 49 0.0017 24.8 9.8 105 352-459 2-117 (121)
272 2dc1_A L-aspartate dehydrogena 61.0 35 0.0012 30.2 8.8 79 119-233 1-79 (236)
273 3ih5_A Electron transfer flavo 60.8 18 0.00061 31.8 6.6 111 120-235 5-122 (217)
274 3gbv_A Putative LACI-family tr 60.7 96 0.0033 27.9 16.0 231 115-394 5-246 (304)
275 3tb6_A Arabinose metabolism tr 60.5 76 0.0026 28.5 11.5 89 119-237 16-108 (298)
276 3ehd_A Uncharacterized conserv 60.4 13 0.00043 31.0 5.2 67 387-458 65-161 (162)
277 3e9m_A Oxidoreductase, GFO/IDH 60.4 28 0.00096 32.7 8.5 92 323-422 5-98 (330)
278 1vl0_A DTDP-4-dehydrorhamnose 60.3 12 0.00041 34.2 5.8 35 116-159 10-44 (292)
279 3hly_A Flavodoxin-like domain; 60.2 12 0.0004 31.1 5.1 37 119-159 1-37 (161)
280 3rqi_A Response regulator prot 60.2 24 0.00084 29.5 7.3 108 350-460 7-125 (184)
281 2qxy_A Response regulator; reg 59.9 29 0.00099 27.2 7.4 108 351-461 5-122 (142)
282 1mio_A Nitrogenase molybdenum 59.8 25 0.00084 35.7 8.2 34 194-233 446-479 (533)
283 3f6p_A Transcriptional regulat 59.8 54 0.0018 24.7 9.5 105 352-459 4-118 (120)
284 1rkx_A CDP-glucose-4,6-dehydra 59.7 20 0.00069 33.9 7.4 35 118-161 9-43 (357)
285 2xw6_A MGS, methylglyoxal synt 59.7 6.6 0.00023 31.5 3.2 102 117-235 2-112 (134)
286 3gv0_A Transcriptional regulat 59.6 73 0.0025 28.7 11.1 93 115-236 5-97 (288)
287 4gqa_A NAD binding oxidoreduct 59.6 7.2 0.00025 38.2 4.2 39 195-233 87-125 (412)
288 3f6c_A Positive transcription 59.5 57 0.002 25.0 9.1 107 351-460 2-120 (134)
289 3lcm_A SMU.1420, putative oxid 59.5 30 0.001 29.7 7.8 39 119-161 1-40 (196)
290 3mjf_A Phosphoribosylamine--gl 59.3 10 0.00035 37.4 5.3 92 118-232 3-95 (431)
291 3kcn_A Adenylate cyclase homol 59.2 55 0.0019 25.9 9.2 31 117-157 3-33 (151)
292 3lrx_A Putative hydrogenase; a 59.2 14 0.00047 30.6 5.3 106 119-233 24-141 (158)
293 1p9l_A Dihydrodipicolinate red 59.1 20 0.00067 32.2 6.6 77 352-428 2-82 (245)
294 2fep_A Catabolite control prot 59.0 1E+02 0.0035 27.7 13.0 90 115-235 13-102 (289)
295 2b4a_A BH3024; flavodoxin-like 58.9 61 0.0021 25.1 11.3 108 350-461 15-132 (138)
296 3l6u_A ABC-type sugar transpor 58.8 41 0.0014 30.4 9.2 92 115-236 5-97 (293)
297 4had_A Probable oxidoreductase 58.4 21 0.00071 33.9 7.2 94 322-422 22-117 (350)
298 3mm4_A Histidine kinase homolo 58.4 77 0.0026 27.0 10.4 34 115-157 58-92 (206)
299 3jvd_A Transcriptional regulat 58.3 60 0.002 30.2 10.5 179 115-359 61-240 (333)
300 3o9z_A Lipopolysaccaride biosy 58.3 41 0.0014 31.3 9.1 33 201-233 69-101 (312)
301 3cnb_A DNA-binding response re 58.3 53 0.0018 25.5 8.8 55 116-212 6-62 (143)
302 2qk4_A Trifunctional purine bi 58.2 23 0.00079 35.0 7.8 93 117-232 23-116 (452)
303 2zki_A 199AA long hypothetical 58.2 12 0.00042 32.0 5.1 39 118-161 4-42 (199)
304 2gwr_A DNA-binding response re 58.2 70 0.0024 27.9 10.4 78 118-237 5-85 (238)
305 3f6r_A Flavodoxin; FMN binding 58.1 21 0.00073 28.7 6.3 39 119-161 2-40 (148)
306 1e6u_A GDP-fucose synthetase; 58.0 16 0.00054 34.0 6.2 32 118-158 3-34 (321)
307 3ph3_A Ribose-5-phosphate isom 57.9 60 0.0021 27.0 8.7 40 114-160 16-55 (169)
308 2jba_A Phosphate regulon trans 57.8 24 0.00083 26.9 6.5 105 352-459 4-121 (127)
309 1y81_A Conserved hypothetical 57.8 70 0.0024 25.5 9.6 38 117-160 13-50 (138)
310 2hsg_A Glucose-resistance amyl 57.7 95 0.0033 28.6 11.8 41 116-159 58-98 (332)
311 4ekn_B Aspartate carbamoyltran 57.7 35 0.0012 31.7 8.2 137 258-405 89-233 (306)
312 2c20_A UDP-glucose 4-epimerase 57.6 26 0.0009 32.6 7.8 27 134-160 8-34 (330)
313 3heb_A Response regulator rece 57.5 52 0.0018 26.1 8.7 32 117-157 3-36 (152)
314 3bbl_A Regulatory protein of L 57.5 1.1E+02 0.0037 27.5 11.9 91 117-235 3-94 (287)
315 1n7h_A GDP-D-mannose-4,6-dehyd 57.5 29 0.00099 33.1 8.2 28 134-161 35-62 (381)
316 2x4g_A Nucleoside-diphosphate- 57.2 13 0.00043 35.0 5.4 37 117-162 12-48 (342)
317 3q2i_A Dehydrogenase; rossmann 57.2 38 0.0013 32.1 8.9 92 322-422 12-106 (354)
318 3cz5_A Two-component response 57.1 71 0.0024 25.3 12.2 107 350-459 5-124 (153)
319 3rc1_A Sugar 3-ketoreductase; 57.0 9.3 0.00032 36.4 4.4 94 114-233 23-118 (350)
320 3u3x_A Oxidoreductase; structu 56.9 12 0.0004 35.9 5.1 95 115-233 23-117 (361)
321 3m9w_A D-xylose-binding peripl 56.8 51 0.0018 30.2 9.6 89 118-236 2-91 (313)
322 3kux_A Putative oxidoreductase 56.8 21 0.00073 33.9 7.0 39 195-233 58-96 (352)
323 1i3c_A Response regulator RCP1 56.7 71 0.0024 25.2 11.1 109 350-458 8-135 (149)
324 1zxx_A 6-phosphofructokinase; 56.7 82 0.0028 29.4 10.6 115 119-237 2-125 (319)
325 3r0j_A Possible two component 56.6 69 0.0024 28.2 10.2 110 350-459 23-140 (250)
326 2r8r_A Sensor protein; KDPD, P 56.5 61 0.0021 28.6 9.2 28 134-161 17-44 (228)
327 2gwr_A DNA-binding response re 56.4 70 0.0024 27.9 10.1 109 351-459 6-121 (238)
328 1h6d_A Precursor form of gluco 56.3 11 0.00038 37.1 5.0 96 321-422 81-181 (433)
329 3db2_A Putative NADPH-dependen 56.3 27 0.00092 33.1 7.6 91 323-422 5-97 (354)
330 2nu8_A Succinyl-COA ligase [AD 56.3 83 0.0028 28.8 10.7 39 196-234 56-94 (288)
331 2k6g_A Replication factor C su 56.2 37 0.0013 26.0 6.9 10 323-332 35-44 (109)
332 2j48_A Two-component sensor ki 55.9 58 0.002 24.0 9.1 30 119-157 2-31 (119)
333 1t2a_A GDP-mannose 4,6 dehydra 55.5 31 0.0011 32.8 8.0 28 134-161 31-58 (375)
334 3mz0_A Inositol 2-dehydrogenas 55.5 36 0.0012 32.1 8.3 89 325-422 4-97 (344)
335 2qvg_A Two component response 55.4 62 0.0021 25.2 8.8 108 350-459 7-134 (143)
336 3e18_A Oxidoreductase; dehydro 55.4 21 0.0007 34.1 6.6 90 117-233 4-94 (359)
337 3slg_A PBGP3 protein; structur 55.3 23 0.00079 33.7 7.0 36 118-162 24-60 (372)
338 2d1p_B TUSC, hypothetical UPF0 55.3 16 0.00056 28.4 4.9 41 120-162 3-43 (119)
339 3d8u_A PURR transcriptional re 54.9 1E+02 0.0035 27.3 11.2 86 118-234 3-88 (275)
340 3of5_A Dethiobiotin synthetase 54.9 19 0.00067 31.8 5.9 39 117-158 2-40 (228)
341 1mio_B Nitrogenase molybdenum 54.8 25 0.00086 34.9 7.3 97 118-233 312-408 (458)
342 2yy7_A L-threonine dehydrogena 54.8 12 0.00041 34.6 4.7 34 119-161 3-38 (312)
343 3l4b_C TRKA K+ channel protien 54.6 12 0.0004 32.8 4.4 33 119-161 1-33 (218)
344 1fy2_A Aspartyl dipeptidase; s 54.5 22 0.00076 31.4 6.2 41 383-424 71-122 (229)
345 3crn_A Response regulator rece 54.1 72 0.0025 24.4 9.4 30 118-156 3-32 (132)
346 3kto_A Response regulator rece 54.0 34 0.0012 26.6 6.9 107 351-460 7-126 (136)
347 3evn_A Oxidoreductase, GFO/IDH 54.0 42 0.0014 31.4 8.5 39 195-233 58-96 (329)
348 3ksm_A ABC-type sugar transpor 53.9 1.2E+02 0.004 26.8 13.6 90 120-237 2-93 (276)
349 3mm4_A Histidine kinase homolo 53.9 53 0.0018 28.0 8.6 67 391-462 119-198 (206)
350 1z7e_A Protein aRNA; rossmann 53.9 31 0.0011 36.0 8.3 77 119-213 1-84 (660)
351 2qsj_A DNA-binding response re 53.9 42 0.0015 26.7 7.6 108 350-460 3-124 (154)
352 1ydw_A AX110P-like protein; st 53.8 65 0.0022 30.5 9.9 92 322-422 5-102 (362)
353 4dad_A Putative pilus assembly 53.7 40 0.0014 26.5 7.3 36 114-158 16-52 (146)
354 1m72_A Caspase-1; caspase, cys 53.6 25 0.00087 32.1 6.5 45 114-158 27-76 (272)
355 1pfk_A Phosphofructokinase; tr 53.5 1.1E+02 0.0037 28.6 10.8 116 119-238 3-127 (320)
356 1qo0_D AMIR; binding protein, 53.5 37 0.0013 28.6 7.4 109 349-463 11-128 (196)
357 2qzj_A Two-component response 53.4 66 0.0022 24.9 8.5 30 118-156 4-33 (136)
358 3h5o_A Transcriptional regulat 53.4 1.4E+02 0.0048 27.6 15.8 184 115-360 59-249 (339)
359 1f4p_A Flavodoxin; electron tr 53.3 16 0.00056 29.4 4.8 37 119-159 1-37 (147)
360 3ouz_A Biotin carboxylase; str 53.3 28 0.00095 34.3 7.4 67 139-211 17-85 (446)
361 3uug_A Multiple sugar-binding 53.2 87 0.003 28.8 10.6 89 118-236 3-92 (330)
362 1k66_A Phytochrome response re 53.1 69 0.0024 25.0 8.7 33 116-157 4-38 (149)
363 2ayx_A Sensor kinase protein R 53.1 1.2E+02 0.0041 26.8 11.3 83 111-235 122-208 (254)
364 3qjg_A Epidermin biosynthesis 53.0 15 0.00053 31.0 4.6 37 119-161 6-42 (175)
365 3a10_A Response regulator; pho 53.0 67 0.0023 23.8 10.4 104 352-458 3-115 (116)
366 4hb9_A Similarities with proba 53.0 11 0.00039 36.3 4.4 31 118-158 1-31 (412)
367 1ydg_A Trp repressor binding p 53.0 22 0.00077 30.7 6.0 41 117-161 5-45 (211)
368 2dko_A Caspase-3; low barrier 52.9 34 0.0012 27.8 6.5 45 114-158 11-61 (146)
369 1k68_A Phytochrome response re 52.9 75 0.0026 24.3 9.0 31 118-157 2-34 (140)
370 3ff4_A Uncharacterized protein 52.9 55 0.0019 25.6 7.6 84 118-233 4-87 (122)
371 2fb6_A Conserved hypothetical 52.9 18 0.00062 28.1 4.7 43 117-162 6-50 (117)
372 1oi7_A Succinyl-COA synthetase 52.8 1.1E+02 0.0038 27.9 10.9 41 196-236 56-96 (288)
373 3m2t_A Probable dehydrogenase; 52.6 27 0.00094 33.2 7.0 91 323-421 5-98 (359)
374 1sbz_A Probable aromatic acid 52.4 20 0.00068 30.9 5.3 37 119-161 1-38 (197)
375 3hdv_A Response regulator; PSI 52.4 61 0.0021 24.9 8.2 32 117-157 6-37 (136)
376 3oa2_A WBPB; oxidoreductase, s 52.2 65 0.0022 29.9 9.4 32 202-233 71-102 (318)
377 1kgs_A DRRD, DNA binding respo 52.0 98 0.0034 26.4 10.2 77 118-236 2-82 (225)
378 2wqk_A 5'-nucleotidase SURE; S 51.9 44 0.0015 30.0 7.7 98 137-236 14-127 (251)
379 1zgz_A Torcad operon transcrip 51.9 72 0.0025 23.8 9.6 108 352-459 4-118 (122)
380 3un1_A Probable oxidoreductase 51.9 43 0.0015 30.0 7.9 35 119-161 28-62 (260)
381 3tpc_A Short chain alcohol deh 51.8 48 0.0017 29.5 8.3 35 120-162 8-42 (257)
382 3od5_A Caspase-6; caspase doma 51.7 27 0.00091 32.0 6.4 46 113-158 15-66 (278)
383 1a9x_A Carbamoyl phosphate syn 51.6 52 0.0018 36.7 9.8 84 116-213 557-643 (1073)
384 2yw2_A Phosphoribosylamine--gl 51.6 35 0.0012 33.3 7.7 89 119-232 1-90 (424)
385 1pyo_A Caspase-2; apoptosis, c 51.4 34 0.0012 28.6 6.4 45 114-158 28-78 (167)
386 1b93_A Protein (methylglyoxal 51.4 27 0.00093 28.6 5.6 104 116-236 9-121 (152)
387 2fqx_A Membrane lipoprotein TM 51.2 1.4E+02 0.0048 27.4 11.7 89 118-234 4-92 (318)
388 2j32_A Caspase-3; Pro-caspase3 51.0 30 0.001 31.1 6.5 45 114-158 11-61 (250)
389 2fzv_A Putative arsenical resi 51.0 49 0.0017 30.3 8.0 42 116-160 56-98 (279)
390 3svl_A Protein YIEF; E. coli C 51.0 5.2 0.00018 34.5 1.4 40 116-158 2-42 (193)
391 4ehd_A Caspase-3; caspase, apo 50.9 30 0.001 31.6 6.5 47 113-159 38-90 (277)
392 1tmy_A CHEY protein, TMY; chem 50.8 74 0.0025 23.7 8.9 104 352-458 4-119 (120)
393 1zh8_A Oxidoreductase; TM0312, 50.8 35 0.0012 32.2 7.3 95 320-422 15-113 (340)
394 3m1a_A Putative dehydrogenase; 50.8 17 0.00057 33.2 5.0 34 119-160 5-38 (281)
395 3e9m_A Oxidoreductase, GFO/IDH 50.7 21 0.00071 33.6 5.7 39 195-233 58-96 (330)
396 3ilh_A Two component response 50.4 76 0.0026 24.6 8.6 30 115-153 6-35 (146)
397 1efv_A Electron transfer flavo 49.9 69 0.0024 29.8 9.0 111 119-237 2-119 (315)
398 1rpn_A GDP-mannose 4,6-dehydra 49.9 18 0.00062 33.8 5.2 38 115-161 11-48 (335)
399 1p6q_A CHEY2; chemotaxis, sign 49.9 81 0.0028 23.8 9.4 106 351-459 7-126 (129)
400 3db2_A Putative NADPH-dependen 49.9 26 0.00089 33.3 6.3 92 116-233 3-95 (354)
401 2cok_A Poly [ADP-ribose] polym 49.6 10 0.00034 29.5 2.6 67 348-422 11-78 (113)
402 3orf_A Dihydropteridine reduct 49.6 40 0.0014 30.0 7.2 29 134-162 29-57 (251)
403 3e61_A Putative transcriptiona 49.5 61 0.0021 28.9 8.7 86 116-234 6-92 (277)
404 1nw9_B Caspase 9, apoptosis-re 48.9 31 0.0011 31.5 6.4 45 114-158 16-66 (277)
405 3euw_A MYO-inositol dehydrogen 48.9 21 0.00071 33.8 5.4 39 195-233 56-94 (344)
406 3p45_A Caspase-6; protease, hu 48.7 39 0.0013 28.5 6.4 45 114-158 39-89 (179)
407 3n7t_A Macrophage binding prot 48.5 37 0.0013 30.4 6.7 44 119-162 10-59 (247)
408 2nn3_C Caspase-1; cysteine pro 48.4 32 0.0011 32.1 6.3 45 114-158 55-104 (310)
409 3cfy_A Putative LUXO repressor 48.3 75 0.0026 24.6 8.1 29 119-156 5-33 (137)
410 2qv0_A Protein MRKE; structura 48.2 94 0.0032 24.1 8.9 108 350-460 9-127 (143)
411 1qgu_B Protein (nitrogenase mo 48.2 61 0.0021 32.7 9.0 98 118-233 360-464 (519)
412 2hqr_A Putative transcriptiona 48.1 57 0.002 28.0 8.0 74 119-235 1-75 (223)
413 2pl1_A Transcriptional regulat 48.1 82 0.0028 23.4 10.0 30 119-157 1-30 (121)
414 1o97_D Electron transferring f 47.9 52 0.0018 30.8 7.8 111 121-237 3-120 (320)
415 2qvg_A Two component response 47.9 57 0.0019 25.4 7.3 34 115-157 4-39 (143)
416 3f6p_A Transcriptional regulat 47.7 86 0.0029 23.5 10.6 76 119-236 3-81 (120)
417 2nm0_A Probable 3-oxacyl-(acyl 47.6 58 0.002 29.0 8.0 27 135-161 29-55 (253)
418 1db3_A GDP-mannose 4,6-dehydra 47.5 38 0.0013 32.0 7.2 27 134-160 8-34 (372)
419 3ko8_A NAD-dependent epimerase 47.5 22 0.00074 32.8 5.3 34 119-161 1-34 (312)
420 2ebu_A Replication factor C su 47.4 52 0.0018 25.3 6.4 15 406-420 73-87 (112)
421 1srr_A SPO0F, sporulation resp 47.3 87 0.003 23.5 9.0 29 119-156 4-32 (124)
422 1kew_A RMLB;, DTDP-D-glucose 4 47.2 46 0.0016 31.3 7.7 33 119-160 1-34 (361)
423 1id1_A Putative potassium chan 47.2 20 0.00067 29.2 4.4 24 137-160 12-35 (153)
424 4e7p_A Response regulator; DNA 47.2 1E+02 0.0035 24.2 10.6 82 115-236 17-102 (150)
425 3luf_A Two-component system re 47.1 1.5E+02 0.0052 26.2 11.1 110 350-459 124-244 (259)
426 3u3x_A Oxidoreductase; structu 47.1 50 0.0017 31.4 7.9 92 322-422 25-119 (361)
427 3oh8_A Nucleoside-diphosphate 47.1 21 0.00072 36.0 5.4 36 118-162 147-182 (516)
428 1mvo_A PHOP response regulator 47.0 94 0.0032 23.7 10.3 110 351-460 4-121 (136)
429 1p2f_A Response regulator; DRR 47.0 48 0.0016 28.5 7.2 107 352-459 4-116 (220)
430 2qh8_A Uncharacterized protein 46.8 84 0.0029 28.6 9.3 90 115-236 5-98 (302)
431 3fgn_A Dethiobiotin synthetase 46.8 33 0.0011 30.9 6.1 41 115-158 22-62 (251)
432 1ml4_A Aspartate transcarbamoy 46.6 70 0.0024 29.7 8.4 135 257-405 92-236 (308)
433 3guy_A Short-chain dehydrogena 46.6 16 0.00056 32.0 4.0 34 119-160 1-34 (230)
434 2c5a_A GDP-mannose-3', 5'-epim 46.3 30 0.001 33.1 6.2 36 117-161 28-63 (379)
435 1wcv_1 SOJ, segregation protei 46.1 23 0.00078 31.8 5.0 40 117-161 4-45 (257)
436 2qyt_A 2-dehydropantoate 2-red 46.0 12 0.00042 34.8 3.3 37 113-159 3-45 (317)
437 3fhl_A Putative oxidoreductase 45.8 44 0.0015 31.8 7.2 39 195-233 56-94 (362)
438 3ec7_A Putative dehydrogenase; 45.6 39 0.0013 32.1 6.8 100 109-233 14-116 (357)
439 3n0r_A Response regulator; sig 45.6 1.7E+02 0.006 26.4 12.8 109 349-459 159-276 (286)
440 2vqe_B 30S ribosomal protein S 45.6 1.7E+02 0.0057 26.2 10.5 34 204-238 158-191 (256)
441 3eq2_A Probable two-component 45.5 61 0.0021 31.1 8.3 78 114-233 1-82 (394)
442 2ho3_A Oxidoreductase, GFO/IDH 45.4 49 0.0017 30.8 7.4 89 325-422 3-93 (325)
443 2phj_A 5'-nucleotidase SURE; S 45.3 24 0.00082 31.7 4.8 37 119-162 2-38 (251)
444 3rft_A Uronate dehydrogenase; 45.3 36 0.0012 30.6 6.3 35 119-161 3-37 (267)
445 3vps_A TUNA, NAD-dependent epi 45.3 20 0.00069 33.1 4.6 35 118-161 7-41 (321)
446 3b2n_A Uncharacterized protein 45.2 1E+02 0.0035 23.6 9.0 107 351-460 4-123 (133)
447 3c3k_A Alanine racemase; struc 45.2 1.2E+02 0.0041 27.1 10.0 87 116-234 6-92 (285)
448 3hcw_A Maltose operon transcri 45.1 67 0.0023 29.1 8.3 95 115-237 4-100 (295)
449 3evn_A Oxidoreductase, GFO/IDH 45.1 20 0.00069 33.6 4.6 91 324-422 6-98 (329)
450 2vyc_A Biodegradative arginine 45.1 67 0.0023 34.2 9.1 40 119-159 1-40 (755)
451 1ys7_A Transcriptional regulat 45.0 1.5E+02 0.005 25.4 12.5 109 351-459 8-124 (233)
452 1zgh_A Methionyl-tRNA formyltr 45.0 18 0.00061 32.8 3.9 36 115-157 27-62 (260)
453 3vtz_A Glucose 1-dehydrogenase 45.0 73 0.0025 28.6 8.3 28 134-161 21-48 (269)
454 2czc_A Glyceraldehyde-3-phosph 45.0 34 0.0012 32.3 6.2 82 340-422 16-110 (334)
455 2xcl_A Phosphoribosylamine--gl 44.9 34 0.0012 33.3 6.4 89 119-232 1-90 (422)
456 3cu5_A Two component transcrip 44.9 1.1E+02 0.0037 23.8 11.5 105 352-459 4-122 (141)
457 3ax6_A Phosphoribosylaminoimid 44.8 93 0.0032 29.6 9.5 34 119-162 2-35 (380)
458 1kgs_A DRRD, DNA binding respo 44.8 1.4E+02 0.0049 25.3 10.1 106 351-459 3-119 (225)
459 1qtn_A Caspase-8; apoptosis, d 44.8 51 0.0017 27.4 6.5 45 114-158 18-75 (164)
460 3o8l_A 6-phosphofructokinase, 44.7 1.6E+02 0.0054 31.2 11.5 119 116-237 398-528 (762)
461 2g1u_A Hypothetical protein TM 44.7 29 0.00098 28.3 5.0 35 117-161 18-52 (155)
462 3sir_A Caspase; hydrolase; 2.6 44.5 21 0.00074 32.3 4.5 47 113-159 14-65 (259)
463 3dty_A Oxidoreductase, GFO/IDH 44.5 56 0.0019 31.5 7.9 96 322-421 11-115 (398)
464 1d4a_A DT-diaphorase, quinone 44.5 34 0.0012 31.1 5.9 40 119-161 3-43 (273)
465 2a5l_A Trp repressor binding p 44.4 34 0.0012 29.0 5.7 38 119-160 6-43 (200)
466 3e3m_A Transcriptional regulat 44.3 1.2E+02 0.0041 28.3 10.2 89 115-234 67-155 (355)
467 3itj_A Thioredoxin reductase 1 44.3 41 0.0014 31.1 6.8 36 115-160 19-54 (338)
468 2bon_A Lipid kinase; DAG kinas 44.3 77 0.0026 29.7 8.6 37 119-160 30-66 (332)
469 3q2i_A Dehydrogenase; rossmann 44.2 28 0.00095 33.0 5.5 39 195-233 66-104 (354)
470 2yxb_A Coenzyme B12-dependent 44.2 54 0.0018 27.0 6.6 61 117-212 17-77 (161)
471 3ruf_A WBGU; rossmann fold, UD 44.2 24 0.00082 33.2 5.1 36 117-161 24-59 (351)
472 2v6g_A Progesterone 5-beta-red 43.9 38 0.0013 31.9 6.5 35 119-162 2-41 (364)
473 1xhf_A DYE resistance, aerobic 43.6 99 0.0034 23.0 10.9 109 351-459 4-119 (123)
474 2h54_A Caspase-1; allosteric s 43.6 56 0.0019 27.5 6.6 41 119-159 43-86 (178)
475 2a9o_A Response regulator; ess 43.5 97 0.0033 22.9 10.2 108 352-459 3-117 (120)
476 3k96_A Glycerol-3-phosphate de 43.4 16 0.00055 34.9 3.6 37 114-160 25-61 (356)
477 4b79_A PA4098, probable short- 43.3 1E+02 0.0035 27.4 8.7 35 120-162 12-46 (242)
478 2dtx_A Glucose 1-dehydrogenase 43.2 82 0.0028 28.2 8.4 27 135-161 16-42 (264)
479 1f1j_A Caspase-7 protease; cas 43.2 30 0.001 32.2 5.3 45 114-158 64-114 (305)
480 2a35_A Hypothetical protein PA 43.1 20 0.0007 30.8 4.1 36 117-161 4-41 (215)
481 3moi_A Probable dehydrogenase; 43.1 35 0.0012 32.9 6.1 91 324-422 3-95 (387)
482 3f2v_A General stress protein 42.9 15 0.0005 31.6 2.9 37 119-159 2-38 (192)
483 2e6c_A 5'-nucleotidase SURE; S 42.9 27 0.00091 31.3 4.7 37 119-162 1-37 (244)
484 3h11_B Caspase-8; cell death, 42.8 41 0.0014 30.6 6.1 45 114-158 12-69 (271)
485 1tlt_A Putative oxidoreductase 42.7 34 0.0012 31.8 5.8 90 324-422 6-96 (319)
486 3uce_A Dehydrogenase; rossmann 42.6 26 0.00088 30.6 4.7 34 119-160 6-39 (223)
487 3v5n_A Oxidoreductase; structu 42.5 63 0.0022 31.4 7.9 97 322-422 36-141 (417)
488 3ono_A Ribose/galactose isomer 42.5 83 0.0028 27.3 7.5 39 117-158 2-40 (214)
489 3keo_A Redox-sensing transcrip 42.5 46 0.0016 29.0 6.1 43 194-236 138-180 (212)
490 2xdq_B Light-independent proto 42.4 41 0.0014 33.9 6.6 92 118-233 303-395 (511)
491 1yio_A Response regulatory pro 42.3 92 0.0032 26.2 8.3 79 115-235 1-83 (208)
492 3nkl_A UDP-D-quinovosamine 4-d 42.3 1.2E+02 0.0042 23.7 9.6 70 118-213 4-74 (141)
493 3bfv_A CAPA1, CAPB2, membrane 42.2 42 0.0015 30.4 6.2 43 116-161 79-121 (271)
494 4a3s_A 6-phosphofructokinase; 42.2 2.1E+02 0.0073 26.5 11.5 115 119-237 2-125 (319)
495 2l2q_A PTS system, cellobiose- 42.2 39 0.0013 25.7 5.1 39 117-160 3-41 (109)
496 1jay_A Coenzyme F420H2:NADP+ o 42.1 26 0.00089 30.2 4.6 33 119-160 1-33 (212)
497 2rjo_A Twin-arginine transloca 42.1 95 0.0033 28.6 9.0 90 116-235 3-95 (332)
498 1l7b_A DNA ligase; BRCT, autos 42.0 23 0.00077 26.2 3.5 60 350-420 10-70 (92)
499 3c97_A Signal transduction his 42.0 1.2E+02 0.004 23.4 13.8 107 351-460 11-130 (140)
500 1qzu_A Hypothetical protein MD 41.9 25 0.00084 30.6 4.2 41 115-161 16-57 (206)
No 1
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=6.2e-46 Score=380.61 Aligned_cols=373 Identities=21% Similarity=0.263 Sum_probs=289.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc---------------------ccCceeccc
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE---------------------FYGAKLIGS 175 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~---------------------~~~~~~~~~ 175 (526)
++|||++++..++.+..||.+.++.+++++|+++||+|+|+++....... ..++.+..+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 57999999876653578999999999999999999999999987654321 122222222
Q ss_pred cc--cCCC-ccc----c-ccchhcccHHHHHHHH-----hcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc
Q 009759 176 RS--FPCP-WYQ----K-VPLSLALSPRIISEVA-----RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY 242 (526)
Q Consensus 176 ~~--~~~~-~~~----~-~~~~~~~~~~l~~~l~-----~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~ 242 (526)
.. +... .+. . ......+...+.++++ +.+||+||+|.+... +.+.++++..++|+|+++|+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~ 159 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTV-FAGALIKKYFKIPAVFTIHRLNKSK 159 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGH-HHHHHHHHHHCCCEEEEESCCCCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhh-hhHHHHhhccCCCEEEEeccccccc
Confidence 21 0000 000 0 1111112334444444 449999999986543 3345566788999999999986543
Q ss_pred ccccccc--cc----cchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCc-------cc
Q 009759 243 IPRYTFS--WL----VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF-------RS 309 (526)
Q Consensus 243 ~~~~~~~--~~----~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~-------~~ 309 (526)
....... .. .......++.+++.+|.++++|+..++.....+..+..++.+||||+|.+.|.+.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~ 239 (439)
T 3fro_A 160 LPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERK 239 (439)
T ss_dssp EEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH
T ss_pred CchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhH
Confidence 2221100 00 11111567888999999999999998886655445678999999999999887652 23
Q ss_pred HHHHHhhcCCCCCCcEEEEEeccc-ccccHHHHHHHHHhC------CCcEEEEEeCCccH--HHHHHHhcCC--CeEEec
Q 009759 310 SEMRWRLSNGEPDKPLIVHVGRLG-VEKSLDFLKRVMDRL------PEARIAFIGDGPYR--EELEKMFTGM--PAVFTG 378 (526)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~vG~l~-~~Kg~~~li~a~~~l------~~~~l~ivG~g~~~--~~l~~l~~~~--~V~~~g 378 (526)
...+.++++ .++ ++|+|+|++. +.||++.+++|++.+ ++++|+|+|+|+.. +.+++++++. .+.+.|
T Consensus 240 ~~~~~~~~~-~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g 317 (439)
T 3fro_A 240 KSLLSKFGM-DEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITE 317 (439)
T ss_dssp HHHHHHHTC-CSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECS
T ss_pred HHHHHHcCC-CCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcC
Confidence 455666655 334 8999999999 999999999999887 68999999999866 7788877654 477899
Q ss_pred ccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 379 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 379 ~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
+++.+++.++|+.||++|+||..|++|++++|||++|+|||+++.||..|++ +++ +|++++++|+++++++|.+++
T Consensus 318 ~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~---~~~-~g~~~~~~d~~~la~~i~~ll 393 (439)
T 3fro_A 318 MLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII---TNE-TGILVKAGDPGELANAILKAL 393 (439)
T ss_dssp CCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHC---CTT-TCEEECTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeE---EcC-ceEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 776 999999999999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 459 Y-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 459 ~-d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
+ |++.++++++++++.+++|+|+.++++++ ++|+++++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~ 432 (439)
T 3fro_A 394 ELSRSDLSKFRENCKKRAMSFSWEKSAERYV-KAYTGSID 432 (439)
T ss_dssp HHTTTTTHHHHHHHHHHHHTSCHHHHHHHHH-HHHHTCSC
T ss_pred hcCHHHHHHHHHHHHHHHhhCcHHHHHHHHH-HHHHHHHH
Confidence 9 99999999999999998899999999997 89998764
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=5.5e-44 Score=366.32 Aligned_cols=379 Identities=23% Similarity=0.262 Sum_probs=282.6
Q ss_pred CCCCCcEEEEEeccCCCC------ccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc-----ccCceeccccccCCCc
Q 009759 114 NNSRPRRIALFVEPSPFS------YVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE-----FYGAKLIGSRSFPCPW 182 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~------~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-----~~~~~~~~~~~~~~~~ 182 (526)
...+.|||++++..++.. ..||.+.++..++++|.++||+|++++........ ..++.+..+.......
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 95 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEG 95 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSS
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCeEEEEecCCCccc
Confidence 356669999998765422 46999999999999999999999999976542111 1223333222211111
Q ss_pred ccc--cc-chhcccHHHHHH-HHhc-CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccc--cccchH
Q 009759 183 YQK--VP-LSLALSPRIISE-VARF-KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFS--WLVKPM 255 (526)
Q Consensus 183 ~~~--~~-~~~~~~~~l~~~-l~~~-~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~--~~~~~~ 255 (526)
... .. ....+...+.+. +++. +||+||+|.+. ..+.+..+++..++|+|+++|+............ ......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~ 174 (438)
T 3c48_A 96 LSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWL-SGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEAR 174 (438)
T ss_dssp CCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHH-HHHHHHHHHHHHTCCEEEECSSCHHHHSCC----CCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCcc-HHHHHHHHHHHcCCCEEEEecCCcccccccccccCCcchHHH
Confidence 110 11 011112233333 4444 49999999743 2334455667789999999999753221111000 001123
Q ss_pred HHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCccc--HHHHHhhcCCCCCCcEEEEEeccc
Q 009759 256 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEPDKPLIVHVGRLG 333 (526)
Q Consensus 256 ~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~vG~l~ 333 (526)
...++.+++.+|.++++|+..++.+.+.++.+..++.+++||+|.+.+.+.... ...+.+++. ..+.++|+|+|++.
T Consensus 175 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~-~~~~~~i~~~G~~~ 253 (438)
T 3c48_A 175 RICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGI-PLHTKVVAFVGRLQ 253 (438)
T ss_dssp HHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTC-CSSSEEEEEESCBS
T ss_pred HHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCC-CCCCcEEEEEeeec
Confidence 356678899999999999999999988666567899999999999888765321 225555554 45778999999999
Q ss_pred ccccHHHHHHHHHhC----C--CcEEEEEeC----CccHHHHHHHhcC----CCeEEecccChhhHHHHHHcCcEEEecC
Q 009759 334 VEKSLDFLKRVMDRL----P--EARIAFIGD----GPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPS 399 (526)
Q Consensus 334 ~~Kg~~~li~a~~~l----~--~~~l~ivG~----g~~~~~l~~l~~~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps 399 (526)
+.||++.++++++.+ | +++|+|+|. |++.+.+++++++ .+|.++|+++++++.++|+.||++|+||
T Consensus 254 ~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps 333 (438)
T 3c48_A 254 PFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPS 333 (438)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECC
T ss_pred ccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECc
Confidence 999999999999876 3 789999998 7777777777764 3699999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCC
Q 009759 400 ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 479 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs 479 (526)
..|++|++++|||++|+|||+++.|+..+++ .++.+|++++++|+++++++|.++++|++.++++++++++.+++|+
T Consensus 334 ~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s 410 (438)
T 3c48_A 334 FNESFGLVAMEAQASGTPVIAARVGGLPIAV---AEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFS 410 (438)
T ss_dssp SCCSSCHHHHHHHHTTCCEEEESCTTHHHHS---CBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHcCCCEEecCCCChhHHh---hCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999 8889999999999999999999999999999999999999996699
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009759 480 WRAATRTIRNEQYNAAIWF 498 (526)
Q Consensus 480 ~~~~~~~~~~~ly~~~l~~ 498 (526)
|+.++++++ ++|++++..
T Consensus 411 ~~~~~~~~~-~~~~~~~~~ 428 (438)
T 3c48_A 411 WAATAAQLS-SLYNDAIAN 428 (438)
T ss_dssp HHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHhhh
Confidence 999999997 899999865
No 3
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=3.5e-44 Score=374.04 Aligned_cols=382 Identities=18% Similarity=0.215 Sum_probs=288.8
Q ss_pred CCCCcEEEEEeccCCC----------CccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc--c----------ccCcee
Q 009759 115 NSRPRRIALFVEPSPF----------SYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ--E----------FYGAKL 172 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~----------~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~--~----------~~~~~~ 172 (526)
+.++|||++++..++. +..||.+.++.+++++|.++||+|+|++....... . ..++.+
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v 83 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRI 83 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEE
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEE
Confidence 4556999999875432 24799999999999999999999999997643211 1 123333
Q ss_pred ccccccCCCcccc--cc-chhcccHHHHHHHHh--cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccc
Q 009759 173 IGSRSFPCPWYQK--VP-LSLALSPRIISEVAR--FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT 247 (526)
Q Consensus 173 ~~~~~~~~~~~~~--~~-~~~~~~~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~ 247 (526)
..+.......... .. ....+...+.+++++ .+||+||+|.+. ..+.+.++++..++|+|++.|+..........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~-~~~~~~~~~~~~~~p~v~~~H~~~~~~~~~~~ 162 (499)
T 2r60_A 84 VRIPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGD-GGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLN 162 (499)
T ss_dssp EEECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHH-HHHHHHHHHHHHCCCEEEECSSCHHHHHHTTC
T ss_pred EEecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCc-chHHHHHHHHhcCCcEEEEccCcccccchhhc
Confidence 3222211111111 00 011123456777777 589999999753 33445556777899999999996543221110
Q ss_pred c-----ccccc-----hHHHHHHHHhhcCcEEEeCChhHHHHHHHh--cc-c----CCCcEEEeecCCCCCCCCCCcc--
Q 009759 248 F-----SWLVK-----PMWLVIKFLHRAADLTLVPSVAIGKDLEAA--RV-T----AANKIRIWKKGVDSESFHPRFR-- 308 (526)
Q Consensus 248 ~-----~~~~~-----~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~--~~-~----~~~ki~vi~ngid~~~~~~~~~-- 308 (526)
. ..... ....+++.+++.+|.++++|+..++.+.+. ++ . +..++.+||||+|.+.|.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~ 242 (499)
T 2r60_A 163 VNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDK 242 (499)
T ss_dssp CCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHH
T ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhh
Confidence 0 00000 122456788999999999999999998876 54 4 5679999999999998876533
Q ss_pred -cHHHHHhhc-----CCCCCCcEEEEEecccccccHHHHHHHHHhCC-----CcEEEEEeC--Cc------c-------H
Q 009759 309 -SSEMRWRLS-----NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-----EARIAFIGD--GP------Y-------R 362 (526)
Q Consensus 309 -~~~~~~~~~-----~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~-----~~~l~ivG~--g~------~-------~ 362 (526)
....+.+++ . ..+.++|+|+|++.+.||++.+++|++.+. .++++|+|+ |+ . .
T Consensus 243 ~~~~~r~~~~~~~~~~-~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~ 321 (499)
T 2r60_A 243 IKAKITKYLERDLGSE-RMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEIL 321 (499)
T ss_dssp HHHHHHHHHHHHSCGG-GTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHH
T ss_pred hHHHHHHHhccccccc-CCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHH
Confidence 144555554 3 456789999999999999999999999883 258999997 43 1 6
Q ss_pred HHHHHHhcCC----CeEEecccChhhHHHHHHcC----cEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccC
Q 009759 363 EELEKMFTGM----PAVFTGMLLGEELSQAYASG----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ 434 (526)
Q Consensus 363 ~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~a----Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~ 434 (526)
+++++++++. +|+|+|+++++++..+|+.| |++|+||..||+|++++|||++|+|||+++.||..|++ .
T Consensus 322 ~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v---~ 398 (499)
T 2r60_A 322 GKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEIL---D 398 (499)
T ss_dssp HHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHT---G
T ss_pred HHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHh---c
Confidence 7777777643 69999999999999999999 99999999999999999999999999999999999999 7
Q ss_pred CCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009759 435 DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYNAAIWFWRKK 502 (526)
Q Consensus 435 ~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~-~fs~~~~~~~~~~~ly~~~l~~~~~~ 502 (526)
++.+|++++++|+++++++|.++++|++.++++++++++.++ +|+|+.++++++ ++|++++...+.+
T Consensus 399 ~~~~g~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~y~~~~~~~~~~ 466 (499)
T 2r60_A 399 GGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYL-EVIQEIADRKDEE 466 (499)
T ss_dssp GGTSSEEECTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHH-HHHHHHHHC----
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhhhhh
Confidence 888999999999999999999999999999999999999995 599999999997 8999998865443
No 4
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.9e-44 Score=362.90 Aligned_cols=360 Identities=21% Similarity=0.315 Sum_probs=290.5
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC--ccc---cCceeccccccCCCccccccchh
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP--QEF---YGAKLIGSRSFPCPWYQKVPLSL 190 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 190 (526)
.++|||+++++.++ +..||.+.++.++++.| .||+|+|++...... ..+ .+..+..... .. .....
T Consensus 2 ~~~mkIl~v~~~~~-p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~ 72 (394)
T 3okp_A 2 SASRKTLVVTNDFP-PRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPR-----SV-MLPTP 72 (394)
T ss_dssp --CCCEEEEESCCT-TSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESS-----SS-CCSCH
T ss_pred CCCceEEEEeCccC-CccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccc-----cc-cccch
Confidence 45799999998765 66899999999999999 699999999876533 111 1222222211 11 11123
Q ss_pred cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCC-EEEEEecCCcccccccccccccchHHHHHHHHhhcCcEE
Q 009759 191 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 269 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 269 (526)
.....+.+++++.+||+||++......+... +++..++| +|+++|+..... ......+...+.+++.+|.+
T Consensus 73 ~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~d~i 144 (394)
T 3okp_A 73 TTAHAMAEIIREREIDNVWFGAAAPLALMAG-TAKQAGASKVIASTHGHEVGW-------SMLPGSRQSLRKIGTEVDVL 144 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCTTGGGGHH-HHHHTTCSEEEEECCSTHHHH-------TTSHHHHHHHHHHHHHCSEE
T ss_pred hhHHHHHHHHHhcCCCEEEECCcchHHHHHH-HHHhcCCCcEEEEeccchhhh-------hhcchhhHHHHHHHHhCCEE
Confidence 4556888999999999999998655444333 35666786 888999753311 11223446678889999999
Q ss_pred EeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcc--cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHh
Q 009759 270 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR--SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 347 (526)
Q Consensus 270 i~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~ 347 (526)
+++|+..++.+.+.++ ...++.+++||+|.+.+.+... ....+.+++. .++.++|+|+|++.+.||++.++++++.
T Consensus 145 i~~s~~~~~~~~~~~~-~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 222 (394)
T 3okp_A 145 TYISQYTLRRFKSAFG-SHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGF-TDTTPVIACNSRLVPRKGQDSLIKAMPQ 222 (394)
T ss_dssp EESCHHHHHHHHHHHC-SSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTC-CTTCCEEEEESCSCGGGCHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHhcC-CCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCC-CcCceEEEEEeccccccCHHHHHHHHHH
Confidence 9999999999999876 4579999999999998876322 2445555554 4566899999999999999999999987
Q ss_pred C----CCcEEEEEeCCccHHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCCC-------CCCcHHHHHHHHc
Q 009759 348 L----PEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSES-------ETLGLVVLEAMSS 414 (526)
Q Consensus 348 l----~~~~l~ivG~g~~~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~-------e~~~~~ilEAma~ 414 (526)
+ ++++|+|+|+|++.+.+++++.+ .+|+++|+++++++.++|+.||++|+||.. |++|++++|||++
T Consensus 223 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~ 302 (394)
T 3okp_A 223 VIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQAC 302 (394)
T ss_dssp HHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHT
T ss_pred HHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHc
Confidence 7 78999999999999999888754 379999999999999999999999999998 9999999999999
Q ss_pred CCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 009759 415 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 415 G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~-~fs~~~~~~~~~~~ly~ 493 (526)
|+|||+++.|+..|++ .++ +|++++++|+++++++|.++++|++.++++++++++.++ +|+|+.++++++ ++|+
T Consensus 303 G~PvI~~~~~~~~e~i---~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~ 377 (394)
T 3okp_A 303 GVPVIAGTSGGAPETV---TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLT-NILQ 377 (394)
T ss_dssp TCCEEECSSTTGGGGC---CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HHHH
T ss_pred CCCEEEeCCCChHHHH---hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHH
Confidence 9999999999999999 888 999999999999999999999999999999999999995 799999999997 8998
Q ss_pred HHHHHH
Q 009759 494 AAIWFW 499 (526)
Q Consensus 494 ~~l~~~ 499 (526)
++....
T Consensus 378 ~~~r~~ 383 (394)
T 3okp_A 378 SEPRKL 383 (394)
T ss_dssp SCCC--
T ss_pred HhccCc
Confidence 876443
No 5
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.4e-43 Score=358.19 Aligned_cols=366 Identities=20% Similarity=0.324 Sum_probs=281.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC--ccccCceeccccccCCCccccccchhcccHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP--QEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.|+.-+....+ |..||.+.++..++++|+++||+|++++...... ....++....+.....+........+.....
T Consensus 13 ~~~~~~~~~~~--p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (394)
T 2jjm_A 13 HMKLKIGITCY--PSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVNQYSVFQYPPYDLALASK 90 (394)
T ss_dssp --CCEEEEECC--C--CHHHHHHHHHHHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC----CCSCCHHHHHHHH
T ss_pred hheeeeehhcC--CCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccccCCceEEEecccccccccccccccHHHHHH
Confidence 35554555443 4579999999999999999999999999754321 1112222222221111112222233445567
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhc--CCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLL--CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~--~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
+.+++++.+||+||+|......+.+.+..+.. ++|+|+++|+........ ......+++.+++.+|.++++|
T Consensus 91 l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~ad~ii~~s 164 (394)
T 2jjm_A 91 MAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS------DPSLNNLIRFGIEQSDVVTAVS 164 (394)
T ss_dssp HHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTT------CTTTHHHHHHHHHHSSEEEESC
T ss_pred HHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCC------CHHHHHHHHHHHhhCCEEEECC
Confidence 88888999999999997654444444444443 599999999853211111 1123456778889999999999
Q ss_pred hhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC---CC
Q 009759 274 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---PE 350 (526)
Q Consensus 274 ~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l---~~ 350 (526)
+..++.+.+.++. ..++.++|||+|.+.+.+. .....+.+++. .++.++|+|+|++.+.||++.++++++.+ ++
T Consensus 165 ~~~~~~~~~~~~~-~~~~~vi~ngv~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~ 241 (394)
T 2jjm_A 165 HSLINETHELVKP-NKDIQTVYNFIDERVYFKR-DMTQLKKEYGI-SESEKILIHISNFRKVKRVQDVVQAFAKIVTEVD 241 (394)
T ss_dssp HHHHHHHHHHTCC-SSCEEECCCCCCTTTCCCC-CCHHHHHHTTC-C---CEEEEECCCCGGGTHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhCC-cccEEEecCCccHHhcCCc-chHHHHHHcCC-CCCCeEEEEeeccccccCHHHHHHHHHHHHhhCC
Confidence 9999999988763 5799999999999988765 34455555543 35678999999999999999999999887 46
Q ss_pred cEEEEEeCCccHHHHHHHhcCC----CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 351 ARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 351 ~~l~ivG~g~~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
++|+|+|+|+..+.+++++++. +|.++|+. +++.++|+.||++|+||..|++|++++|||++|+|||+++.|+.
T Consensus 242 ~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~ 319 (394)
T 2jjm_A 242 AKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGI 319 (394)
T ss_dssp CEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSC--SCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTS
T ss_pred CEEEEECCchHHHHHHHHHHHcCCCCeEEEeCch--hhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCCh
Confidence 9999999999888998888764 59999974 79999999999999999999999999999999999999999999
Q ss_pred CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHH
Q 009759 427 PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWR 500 (526)
Q Consensus 427 ~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~ly~~~l~~~~ 500 (526)
.|++ +++.+|++++++|+++++++|.++++|++.++++++++++.+ ++|+|+.++++++ ++|+++++..+
T Consensus 320 ~e~v---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~ 390 (394)
T 2jjm_A 320 PEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYE-TIYYDVLRDDK 390 (394)
T ss_dssp TTTC---CBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHTC----
T ss_pred HHHh---hcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhhh
Confidence 9999 888999999999999999999999999999999999999999 7999999999997 89999987643
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=2.2e-43 Score=358.04 Aligned_cols=361 Identities=20% Similarity=0.286 Sum_probs=278.9
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCcccc---ccchh
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQK---VPLSL 190 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 190 (526)
...++|||++++..++ +..||.+.++..++++|.++||+|++++....... ...........+..+.... .....
T Consensus 16 ~~~~~MkIl~i~~~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSF-DVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK-LPDYVVSGGKAVPIPYNGSVARLRFGP 93 (406)
T ss_dssp -----CEEEEECSSCT-TSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC-CCTTEEECCCCC------------CCH
T ss_pred cCCCcceEEEEeccCC-CCCCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc-CCcccccCCcEEeccccCCcccccccH
Confidence 4566799999986533 56699999999999999999999999998664331 1111111111122221111 11112
Q ss_pred cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEE
Q 009759 191 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 270 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 270 (526)
.....+.+++++.+||+||++......+ ...+++..++|+|+++|+..+... .........+.+++.+|.++
T Consensus 94 ~~~~~l~~~l~~~~~Dii~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~-------~~~~~~~~~~~~~~~~d~ii 165 (406)
T 2gek_A 94 ATHRKVKKWIAEGDFDVLHIHEPNAPSL-SMLALQAAEGPIVATFHTSTTKSL-------TLSVFQGILRPYHEKIIGRI 165 (406)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSSH-HHHHHHHEESSEEEEECCCCCSHH-------HHHHHHSTTHHHHTTCSEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCccchHH-HHHHHHhcCCCEEEEEcCcchhhh-------hHHHHHHHHHHHHhhCCEEE
Confidence 2335788888889999999998755444 445566679999999999654321 01111112236789999999
Q ss_pred eCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecc-cccccHHHHHHHHHhC-
Q 009759 271 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL- 348 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l-~~~Kg~~~li~a~~~l- 348 (526)
++|+..++.+.+.++ ..++ ++|||+|.+.+.+...... ...+.++++|+|++ .+.||++.+++++..+
T Consensus 166 ~~s~~~~~~~~~~~~--~~~~-vi~~~v~~~~~~~~~~~~~-------~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~ 235 (406)
T 2gek_A 166 AVSDLARRWQMEALG--SDAV-EIPNGVDVASFADAPLLDG-------YPREGRTVLFLGRYDEPRKGMAVLLAALPKLV 235 (406)
T ss_dssp ESSHHHHHHHHHHHS--SCEE-ECCCCBCHHHHHTCCCCTT-------CSCSSCEEEEESCTTSGGGCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhcC--CCcE-EecCCCChhhcCCCchhhh-------ccCCCeEEEEEeeeCccccCHHHHHHHHHHHH
Confidence 999999999987553 4688 9999999876644322110 12256799999999 9999999999999887
Q ss_pred ---CCcEEEEEeCCccHHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCC-CCCCcHHHHHHHHcCCcEEEeC
Q 009759 349 ---PEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 349 ---~~~~l~ivG~g~~~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~-~e~~~~~ilEAma~G~PvI~~~ 422 (526)
++++|+|+|.|+. +.+++++++ .+|+++|+++++++.++|+.||++|+||. .|++|++++|||++|+|||+++
T Consensus 236 ~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~ 314 (406)
T 2gek_A 236 ARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASD 314 (406)
T ss_dssp TTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECC
T ss_pred HHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEec
Confidence 6899999999987 888887764 47999999999999999999999999996 9999999999999999999999
Q ss_pred CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 009759 423 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFW 499 (526)
Q Consensus 423 ~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~~~ 499 (526)
.|+..+++ .++.+|++++++|+++++++|.++++|++.++++++++++.+++|+|+.+++++. ++|+++++..
T Consensus 315 ~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~ 387 (406)
T 2gek_A 315 LDAFRRVL---ADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIM-RVYETVSGAG 387 (406)
T ss_dssp CHHHHHHH---TTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHHHH-HHHHHHCCTT
T ss_pred CCcHHHHh---cCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhc
Confidence 99999999 8889999999999999999999999999999999999999999999999999997 8999987653
No 7
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=3.6e-43 Score=365.44 Aligned_cols=376 Identities=16% Similarity=0.209 Sum_probs=265.6
Q ss_pred CCCCcEEEEE-eccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc---------------Cceec-----
Q 009759 115 NSRPRRIALF-VEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY---------------GAKLI----- 173 (526)
Q Consensus 115 ~~~~mkIliv-~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~---------------~~~~~----- 173 (526)
..+.||||++ ++..|+.+.||.+.++..|.++|+++||+|.|+++.++...... ...+.
T Consensus 6 ~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (536)
T 3vue_A 6 HHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKR 85 (536)
T ss_dssp --CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEET
T ss_pred CCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEEC
Confidence 4567999999 45668888999999999999999999999999998764321100 00000
Q ss_pred ccccc--CCC-cccc--------cc-------------chhcccHHHHHHHHh-------------cCCCEEEECCCchH
Q 009759 174 GSRSF--PCP-WYQK--------VP-------------LSLALSPRIISEVAR-------------FKPDIIHASSPGIM 216 (526)
Q Consensus 174 ~~~~~--~~~-~~~~--------~~-------------~~~~~~~~l~~~l~~-------------~~pDiV~~~~~~~~ 216 (526)
++..+ ..+ ++.+ +. ....+.....+.++. ..+||+|+|+|+..
T Consensus 86 gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~ 165 (536)
T 3vue_A 86 GVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTG 165 (536)
T ss_dssp TEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGS
T ss_pred CceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHH
Confidence 00000 000 0000 00 000111222222221 24578889998765
Q ss_pred HHHHHHHHHh------cCCCEEEEEecCCccccc------cccccc---------------ccchHHHHHHHHhhcCcEE
Q 009759 217 VFGALIIAKL------LCVPIVMSYHTHVPVYIP------RYTFSW---------------LVKPMWLVIKFLHRAADLT 269 (526)
Q Consensus 217 ~~~~~~~~~~------~~~p~v~~~h~~~~~~~~------~~~~~~---------------~~~~~~~~~~~~~~~ad~i 269 (526)
..+.++.... .++|+|+|+|+....... ...... .......+++..+..||.|
T Consensus 166 l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v 245 (536)
T 3vue_A 166 PLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRV 245 (536)
T ss_dssp THHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEE
T ss_pred HHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEE
Confidence 5544433222 378999999985432110 000000 0000113577888999999
Q ss_pred EeCChhHHHHHHHhcc--------cCCCcEEEeecCCCCCCCCCCcc-------------------cHHHHHhhcCC-CC
Q 009759 270 LVPSVAIGKDLEAARV--------TAANKIRIWKKGVDSESFHPRFR-------------------SSEMRWRLSNG-EP 321 (526)
Q Consensus 270 i~~S~~~~~~l~~~~~--------~~~~ki~vi~ngid~~~~~~~~~-------------------~~~~~~~~~~~-~~ 321 (526)
+++|+.+++++.+.++ ....++.+|+||||.+.|.|..+ +..++.++++. .+
T Consensus 246 ~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~ 325 (536)
T 3vue_A 246 LTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDR 325 (536)
T ss_dssp EESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCT
T ss_pred EEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCC
Confidence 9999999999876432 23568999999999999987532 12334444543 45
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhC--CCcEEEEEeCCcc--HHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEE
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFTG--MPAVFTGMLLGEELSQAYASGDVF 395 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l--~~~~l~ivG~g~~--~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~ 395 (526)
+.++|+|+||+.++||++.+++|+.++ .+.+++++|.|+. ...++..... .++.+.+..+.+++..+|+.||++
T Consensus 326 ~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~ 405 (536)
T 3vue_A 326 KIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVL 405 (536)
T ss_dssp TSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSEE
T ss_pred CCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhhee
Confidence 788999999999999999999999987 4789999998753 3344444433 379999999999999999999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeE----------eeCCCCHHHHHHHHHHhhh--CHHH
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY----------LFNPGDLDDCLSKLEPLLY--NQEL 463 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~----------~~~~~d~~~la~ai~~ll~--d~~~ 463 (526)
|+||++|+||++++|||+||+|||++++||++|++ .++.+|+ ++++.|+++|+++|.+++. +...
T Consensus 406 v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V---~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~ 482 (536)
T 3vue_A 406 AVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTV---IEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPA 482 (536)
T ss_dssp EECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHC---CBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHH
T ss_pred ecccccCCCCHHHHHHHHcCCCEEEcCCCCchhee---eCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999999 8898988 6677789999999998776 4455
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 009759 464 RETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 464 ~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l 496 (526)
++++.+++.+ ++|||++++++|+ ++|+++.
T Consensus 483 ~~~~~~~am~--~~fSW~~~A~~y~-~ly~~L~ 512 (536)
T 3vue_A 483 YEEMVRNCMN--QDLSWKGPAKNWE-NVLLGLG 512 (536)
T ss_dssp HHHHHHHHHH--SCCSSHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHHHH--hcCCHHHHHHHHH-HHHHHhh
Confidence 6777665532 5899999999997 8999873
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.4e-42 Score=360.69 Aligned_cols=373 Identities=17% Similarity=0.188 Sum_probs=276.2
Q ss_pred cEEEEEeccC-CCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-c-----------------------ccCceec
Q 009759 119 RRIALFVEPS-PFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-E-----------------------FYGAKLI 173 (526)
Q Consensus 119 mkIliv~~~~-p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~-----------------------~~~~~~~ 173 (526)
|||++++..+ |....||.+.++.+++++|+++||+|+|++....... . ..++.+.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 8999998754 3335799999999999999999999999997642110 0 0122222
Q ss_pred cccc---cCCC--cccc-----c-c---chhcccHHHHHHHHh----cCCCEEEECCCchHHHHHHHHH-HhcCCCEEEE
Q 009759 174 GSRS---FPCP--WYQK-----V-P---LSLALSPRIISEVAR----FKPDIIHASSPGIMVFGALIIA-KLLCVPIVMS 234 (526)
Q Consensus 174 ~~~~---~~~~--~~~~-----~-~---~~~~~~~~l~~~l~~----~~pDiV~~~~~~~~~~~~~~~~-~~~~~p~v~~ 234 (526)
.+.. +... .+.. . . ....+...+.++++. .+||+||+|.+..... +.+++ +..++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~~~p~v~t 159 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAARGRPAKSVFT 159 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHTTCSSEEEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhccCCCCEEEE
Confidence 1110 0000 0000 0 0 000122345555553 7999999998654333 33344 6789999999
Q ss_pred EecCCcccc-ccc-------ccccc------cchHHHHHHHHhhcCcEEEeCChhHHHHHHHh-ccc--------CC--C
Q 009759 235 YHTHVPVYI-PRY-------TFSWL------VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA-RVT--------AA--N 289 (526)
Q Consensus 235 ~h~~~~~~~-~~~-------~~~~~------~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~-~~~--------~~--~ 289 (526)
+|+...... ... ..... ......+++.+++.+|.++++|+..++.+.+. ++. +. .
T Consensus 160 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (485)
T 2qzs_A 160 VHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREG 239 (485)
T ss_dssp ESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTT
T ss_pred ecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHHHHhhccCC
Confidence 999753211 100 00000 00011456778899999999999999988764 221 12 6
Q ss_pred cEEEeecCCCCCCCCCCcc------------------cHHHHHhhcCCC-CCCcEEEEEecccccccHHHHHHHHHhC--
Q 009759 290 KIRIWKKGVDSESFHPRFR------------------SSEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 348 (526)
Q Consensus 290 ki~vi~ngid~~~~~~~~~------------------~~~~~~~~~~~~-~~~~~i~~vG~l~~~Kg~~~li~a~~~l-- 348 (526)
++.+||||+|.+.|.+... ...++.++++.. .+.++|+|+||+.+.||++.+++|++.+
T Consensus 240 ~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~ 319 (485)
T 2qzs_A 240 RLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319 (485)
T ss_dssp CEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH
T ss_pred ceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh
Confidence 8999999999998876532 345666666532 2678999999999999999999999988
Q ss_pred CCcEEEEEeCCc--cHHHHHHHhcC--CCeE-EecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 349 PEARIAFIGDGP--YREELEKMFTG--MPAV-FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 349 ~~~~l~ivG~g~--~~~~l~~l~~~--~~V~-~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
++++|+|+|+|+ +.+.+++++.+ .+|. +.|+ +.+++..+|+.||++|+||.+|++|++++|||+||+|||+++.
T Consensus 320 ~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~ 398 (485)
T 2qzs_A 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRT 398 (485)
T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS
T ss_pred CCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC-CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCC
Confidence 589999999885 56777777765 3686 7888 7778899999999999999999999999999999999999999
Q ss_pred CCCCceecccCCC---------ceeEeeCCCCHHHHHHHHHHhh---hCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009759 424 GGIPDIIPEDQDG---------KIGYLFNPGDLDDCLSKLEPLL---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQ 491 (526)
Q Consensus 424 gg~~e~v~~~~~~---------~~g~~~~~~d~~~la~ai~~ll---~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~l 491 (526)
||..|++ .++ .+|++++++|+++++++|.+++ +|++.++++++++++ ++|||+.++++++ ++
T Consensus 399 gg~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~l 472 (485)
T 2qzs_A 399 GGLADTV---SDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYR-EL 472 (485)
T ss_dssp HHHHHHC---CBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHH-HH
T ss_pred CCcccee---ccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHH-HH
Confidence 9999999 777 8999999999999999999999 799999999998874 6899999999997 89
Q ss_pred HHHHHHHH
Q 009759 492 YNAAIWFW 499 (526)
Q Consensus 492 y~~~l~~~ 499 (526)
|++++...
T Consensus 473 y~~~~~~~ 480 (485)
T 2qzs_A 473 YYRLKLEH 480 (485)
T ss_dssp HHHHC---
T ss_pred HHHhhhhh
Confidence 99887654
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=3.4e-43 Score=365.25 Aligned_cols=372 Identities=16% Similarity=0.156 Sum_probs=276.0
Q ss_pred cEEEEEeccCC-CCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-c------------------------ccCcee
Q 009759 119 RRIALFVEPSP-FSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-E------------------------FYGAKL 172 (526)
Q Consensus 119 mkIliv~~~~p-~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~------------------------~~~~~~ 172 (526)
|||++++..++ ....||.+.++.+++++|.++||+|+|++....... . ..++.+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 89999987553 235799999999999999999999999997643210 0 012222
Q ss_pred cccccc---CCC--cccc-----c-c---chhcccHHHHHHHH----hcCCCEEEECCCchHHHHHHHHHHh--cCCCEE
Q 009759 173 IGSRSF---PCP--WYQK-----V-P---LSLALSPRIISEVA----RFKPDIIHASSPGIMVFGALIIAKL--LCVPIV 232 (526)
Q Consensus 173 ~~~~~~---~~~--~~~~-----~-~---~~~~~~~~l~~~l~----~~~pDiV~~~~~~~~~~~~~~~~~~--~~~p~v 232 (526)
..+... ... .+.. . . ....+...+.++++ +.+|||||+|.+... +.+.++++. .++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~-~~~~~~~~~~~~~~p~v 159 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAA-MTPVYMRYAETPEIPSL 159 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHT-THHHHHHHSSSCCCCEE
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchh-HHHHHHhhcccCCCCEE
Confidence 211100 000 0000 0 0 00011223444443 679999999985332 223444443 799999
Q ss_pred EEEecCCcccc-ccc-------ccccc----cc--hHHHHHHHHhhcCcEEEeCChhHHHHHHHh-cc--------cCCC
Q 009759 233 MSYHTHVPVYI-PRY-------TFSWL----VK--PMWLVIKFLHRAADLTLVPSVAIGKDLEAA-RV--------TAAN 289 (526)
Q Consensus 233 ~~~h~~~~~~~-~~~-------~~~~~----~~--~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~-~~--------~~~~ 289 (526)
+++|+...... ... ..... .. ....+++.+++.+|.++++|+..++.+.+. ++ .+..
T Consensus 160 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (485)
T 1rzu_A 160 LTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAH 239 (485)
T ss_dssp EEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGG
T ss_pred EEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccccCcchHHHHHhhcC
Confidence 99999653211 100 00000 00 011356788899999999999999988764 22 2457
Q ss_pred cEEEeecCCCCCCCCCCcc------------------cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC--C
Q 009759 290 KIRIWKKGVDSESFHPRFR------------------SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--P 349 (526)
Q Consensus 290 ki~vi~ngid~~~~~~~~~------------------~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l--~ 349 (526)
++.+|+||+|.+.|.+... ...++.++++..++.++|+|+||+.+.||++.+++|++.+ +
T Consensus 240 ~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~ 319 (485)
T 1rzu_A 240 VLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL 319 (485)
T ss_dssp GEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT
T ss_pred CceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHhc
Confidence 9999999999998876543 3556667766443367999999999999999999999887 6
Q ss_pred CcEEEEEeCCc--cHHHHHHHhcCC--CeE-EecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 350 EARIAFIGDGP--YREELEKMFTGM--PAV-FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 350 ~~~l~ivG~g~--~~~~l~~l~~~~--~V~-~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
+++|+|+|+|+ +.+.+++++.+. +|. +.|+ +.+++..+|+.||++|+||.+|++|++++|||+||+|||+++.|
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~g 398 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTG 398 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSH
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCC
Confidence 89999999985 467777777653 687 7888 77778999999999999999999999999999999999999999
Q ss_pred CCCceecccCCC---------ceeEeeCCCCHHHHHHHHHHhh---hCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 425 GIPDIIPEDQDG---------KIGYLFNPGDLDDCLSKLEPLL---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 425 g~~e~v~~~~~~---------~~g~~~~~~d~~~la~ai~~ll---~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
|..|++ .++ .+|++++++|+++++++|.+++ +|++.++++++++++ ++|||+.++++++ ++|
T Consensus 399 g~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~~y 472 (485)
T 1rzu_A 399 GLADTV---IDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYA-ALY 472 (485)
T ss_dssp HHHHHC---CBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHH-HHH
T ss_pred Chhhee---cccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HhCChHHHHHHHH-HHH
Confidence 999999 777 8999999999999999999999 799999999998864 6899999999997 899
Q ss_pred HHHHHH
Q 009759 493 NAAIWF 498 (526)
Q Consensus 493 ~~~l~~ 498 (526)
++++..
T Consensus 473 ~~~~~~ 478 (485)
T 1rzu_A 473 SQLISK 478 (485)
T ss_dssp HHHTC-
T ss_pred HHhhCC
Confidence 988654
No 10
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.2e-41 Score=346.24 Aligned_cols=349 Identities=17% Similarity=0.190 Sum_probs=265.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceecccccc-CCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSF-PCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 197 (526)
|||++++..+ +..||.+.++..++++|+++ |+|++++.................... ...... ........+.
T Consensus 1 MkI~~v~~~~--p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ 74 (413)
T 3oy2_A 1 MKLIIVGAHS--SVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLN---EQGFYYSGLS 74 (413)
T ss_dssp CEEEEEEECT--TCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHTTCC---STTCCHHHHH
T ss_pred CeEEEecCCC--CCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccccccc---cccchHHHHH
Confidence 8999998753 45699999999999999999 999999976542211111110000000 000111 0012234667
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCC----EEEEEecCCcccccccccccccchHHHHHHHHhhcCc--EEEe
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVP----IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD--LTLV 271 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p----~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~ii~ 271 (526)
+.+++.+||+||++.+.. ..+..+.+..++| ++...|......... .+.+++.+| .+++
T Consensus 75 ~~l~~~~~Div~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ii~ 139 (413)
T 3oy2_A 75 EFIDVHKPDIVMIYNDPI--VIGNYLLAMGKCSHRTKIVLYVDLVSKNIREN-------------LWWIFSHPKVVGVMA 139 (413)
T ss_dssp HHHHHHCCSEEEEEECHH--HHHHHHHHGGGCCSCCEEEEEECCCSBSCCGG-------------GGGGGGCTTEEEEEE
T ss_pred HHHHhcCCCEEEEcchHH--HHHHHHHHhccCCCCCceeeeccccchhhHHH-------------HHHHHhccCCceEEE
Confidence 788889999999995433 2234444555544 455555433221100 355778888 9999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCC--CCcEEEEEecccccccHHHHHHHHHhC-
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP--DKPLIVHVGRLGVEKSLDFLKRVMDRL- 348 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~vG~l~~~Kg~~~li~a~~~l- 348 (526)
+|+..++.+.+.+. ..++.++|||+|.+.+ ...+.+++. .. +.++|+|+|++.+.||++.+++|++.+
T Consensus 140 ~S~~~~~~~~~~~~--~~~~~vi~ngvd~~~~------~~~~~~~~~-~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~ 210 (413)
T 3oy2_A 140 MSKCWISDICNYGC--KVPINIVSHFVDTKTI------YDARKLVGL-SEYNDDVLFLNMNRNTARKRLDIYVLAAARFI 210 (413)
T ss_dssp SSTHHHHHHHHTTC--CSCEEECCCCCCCCCC------TTHHHHTTC-GGGTTSEEEECCSCSSGGGTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCC--CCceEEeCCCCCHHHH------HHHHHhcCC-CcccCceEEEEcCCCchhcCcHHHHHHHHHHH
Confidence 99999999999553 5799999999999877 223334433 23 678999999999999999999999887
Q ss_pred ---CCcEEEEEeCCccH------HHHHHHhcCC----C-------eEEecccChhhHHHHHHcCcEEEecCCCCCCcHHH
Q 009759 349 ---PEARIAFIGDGPYR------EELEKMFTGM----P-------AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 408 (526)
Q Consensus 349 ---~~~~l~ivG~g~~~------~~l~~l~~~~----~-------V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~i 408 (526)
++++|+|+|+|+.. +.+++++++. + |.+.|+++++++.++|++||++|+||..|++|+++
T Consensus 211 ~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~ 290 (413)
T 3oy2_A 211 SKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCS 290 (413)
T ss_dssp HHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHH
T ss_pred HhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHH
Confidence 89999999988654 7777765543 2 78889999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEeCCCCCCceecccCCCce---------------eE--eeCCCCHHHHHHHHHHhhhCHHHHHHHHHHH
Q 009759 409 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKI---------------GY--LFNPGDLDDCLSKLEPLLYNQELRETMGQAA 471 (526)
Q Consensus 409 lEAma~G~PvI~~~~gg~~e~v~~~~~~~~---------------g~--~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a 471 (526)
+|||++|+|||+++.||..|++ .++.+ |+ +++++|+++++++| ++++|++.++++++++
T Consensus 291 lEAma~G~PvI~s~~~g~~e~v---~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a 366 (413)
T 3oy2_A 291 AEGAVLGKPLIISAVGGADDYF---SGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRV 366 (413)
T ss_dssp HHHHTTTCCEEEECCHHHHHHS---CTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEcCCCChHHHH---ccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 9999999999999999999999 77776 88 99999999999999 9999999999999999
Q ss_pred HHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009759 472 RQEM-EKYDWRAATRTIRNEQYNAAIWFWRKK 502 (526)
Q Consensus 472 ~~~~-~~fs~~~~~~~~~~~ly~~~l~~~~~~ 502 (526)
++.+ ++|+|+.++++++ ++|++++++...+
T Consensus 367 ~~~~~~~fs~~~~~~~~~-~~~~~~~~~~~~~ 397 (413)
T 3oy2_A 367 QDFVKTKPTWDDISSDII-DFFNSLLRVESRE 397 (413)
T ss_dssp HHHHTTSCCHHHHHHHHH-HHHHHHTC-----
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHhhcCCC
Confidence 9999 5899999999997 8999998765433
No 11
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=1.4e-41 Score=336.78 Aligned_cols=310 Identities=19% Similarity=0.184 Sum_probs=257.4
Q ss_pred CcEEEEEecc-----------CCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccc
Q 009759 118 PRRIALFVEP-----------SPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKV 186 (526)
Q Consensus 118 ~mkIliv~~~-----------~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (526)
+|||++++.. +|....||.+.++..++++|.++||+|++++....... ..+..+ +...
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~-~~~~~~-----~~~~----- 71 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG-RPGLTV-----VPAG----- 71 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC-STTEEE-----CSCC-----
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC-CCccee-----ccCC-----
Confidence 4999999886 23234699999999999999999999999997654322 111111 1111
Q ss_pred cchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcC
Q 009759 187 PLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAA 266 (526)
Q Consensus 187 ~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 266 (526)
....+.+++++.+||+||+|.+..... .++..++| |+++|+...... .+
T Consensus 72 -----~~~~l~~~l~~~~~Dvi~~~~~~~~~~----~~~~~~~p-v~~~h~~~~~~~---------------------~~ 120 (342)
T 2iuy_A 72 -----EPEEIERWLRTADVDVVHDHSGGVIGP----AGLPPGTA-FISSHHFTTRPV---------------------NP 120 (342)
T ss_dssp -----SHHHHHHHHHHCCCSEEEECSSSSSCS----TTCCTTCE-EEEEECSSSBCS---------------------CC
T ss_pred -----cHHHHHHHHHhcCCCEEEECCchhhHH----HHhhcCCC-EEEecCCCCCcc---------------------cc
Confidence 123778888999999999998653322 25667899 999999764311 19
Q ss_pred cEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHH
Q 009759 267 DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 346 (526)
Q Consensus 267 d~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~ 346 (526)
|.++++|+..++.+.+ ..++.+|+||+|.+.+.+... ...++++|+|+|++.+.||++.++++++
T Consensus 121 d~ii~~S~~~~~~~~~-----~~~~~vi~ngvd~~~~~~~~~----------~~~~~~~i~~vG~~~~~Kg~~~li~a~~ 185 (342)
T 2iuy_A 121 VGCTYSSRAQRAHCGG-----GDDAPVIPIPVDPARYRSAAD----------QVAKEDFLLFMGRVSPHKGALEAAAFAH 185 (342)
T ss_dssp TTEEESCHHHHHHTTC-----CTTSCBCCCCBCGGGSCCSTT----------CCCCCSCEEEESCCCGGGTHHHHHHHHH
T ss_pred eEEEEcCHHHHHHHhc-----CCceEEEcCCCChhhcCcccc----------cCCCCCEEEEEeccccccCHHHHHHHHH
Confidence 9999999999998865 368999999999988766532 1235678999999999999999999999
Q ss_pred hCCCcEEEEEeCCccHHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCC----------CCCCcHHHHHHHHc
Q 009759 347 RLPEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE----------SETLGLVVLEAMSS 414 (526)
Q Consensus 347 ~l~~~~l~ivG~g~~~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~----------~e~~~~~ilEAma~ 414 (526)
.+ +++|+|+|+|+..+.+++++++ .+|+++|+++++++.++|+.||++|+||. .|++|++++|||++
T Consensus 186 ~~-~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~ 264 (342)
T 2iuy_A 186 AC-GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVS 264 (342)
T ss_dssp HH-TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHT
T ss_pred hc-CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhc
Confidence 98 9999999999888888877654 58999999999999999999999999999 89999999999999
Q ss_pred CCcEEEeCCCCCCceecccCC--CceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Q 009759 415 GIPVVGVRAGGIPDIIPEDQD--GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQ 491 (526)
Q Consensus 415 G~PvI~~~~gg~~e~v~~~~~--~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~~l 491 (526)
|+|||+++.||..|++ ++ +.+|+++++ |+++++++|.++++ ++++++.+ ++|+|+.+++++. ++
T Consensus 265 G~PvI~s~~~~~~e~~---~~~~~~~g~~~~~-d~~~l~~~i~~l~~--------~~~~~~~~~~~~s~~~~~~~~~-~~ 331 (342)
T 2iuy_A 265 GTPVVGTGNGCLAEIV---PSVGEVVGYGTDF-APDEARRTLAGLPA--------SDEVRRAAVRLWGHVTIAERYV-EQ 331 (342)
T ss_dssp TCCEEECCTTTHHHHG---GGGEEECCSSSCC-CHHHHHHHHHTSCC--------HHHHHHHHHHHHBHHHHHHHHH-HH
T ss_pred CCCEEEcCCCChHHHh---cccCCCceEEcCC-CHHHHHHHHHHHHH--------HHHHHHHHHHhcCHHHHHHHHH-HH
Confidence 9999999999999999 88 889999999 99999999999987 66788888 6899999999997 89
Q ss_pred HHHHHHH
Q 009759 492 YNAAIWF 498 (526)
Q Consensus 492 y~~~l~~ 498 (526)
|++++++
T Consensus 332 ~~~~~~~ 338 (342)
T 2iuy_A 332 YRRLLAG 338 (342)
T ss_dssp HHHHHTT
T ss_pred HHHHHcc
Confidence 9998753
No 12
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=3.9e-40 Score=352.99 Aligned_cols=375 Identities=17% Similarity=0.218 Sum_probs=271.7
Q ss_pred CCCcEEEEEeccCCC---------CccCchHHHHHH--------HHHHHHHCCCeEE----EEEeCCCCC---------c
Q 009759 116 SRPRRIALFVEPSPF---------SYVSGYKNRFQN--------FIKYLREMGDEVM----VVTTHEGVP---------Q 165 (526)
Q Consensus 116 ~~~mkIliv~~~~p~---------~~~gG~~~~~~~--------l~~~L~~~G~~V~----vi~~~~~~~---------~ 165 (526)
.+.|+|++++.+. + ++.||...++.+ |++.|+++||+|+ |+|...... +
T Consensus 276 ~~~~~i~~is~hg-~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e 354 (816)
T 3s28_A 276 PMVFNVVILSPHG-YFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLE 354 (816)
T ss_dssp CCCCEEEEECCSS-CCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEE
T ss_pred CceeEEEEEcCCc-ccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcce
Confidence 4568999997753 3 788998888884 6677788999886 887653221 1
Q ss_pred cc---cCceeccccccCCC-----ccccc--cc-hhccc-HHHHHHHHh--cCCCEEEECCCchHHHHHHHHHHhcCCCE
Q 009759 166 EF---YGAKLIGSRSFPCP-----WYQKV--PL-SLALS-PRIISEVAR--FKPDIIHASSPGIMVFGALIIAKLLCVPI 231 (526)
Q Consensus 166 ~~---~~~~~~~~~~~~~~-----~~~~~--~~-~~~~~-~~l~~~l~~--~~pDiV~~~~~~~~~~~~~~~~~~~~~p~ 231 (526)
.. .+..+++++..+.. +..+. .. ...+. ..+..+++. .+|||||+|.+. ..+.+.++++..++|+
T Consensus 355 ~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~-sglva~llar~~gvP~ 433 (816)
T 3s28_A 355 RVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSD-GNLVASLLAHKLGVTQ 433 (816)
T ss_dssp ECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHH-HHHHHHHHHHHHTCCE
T ss_pred eecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCch-HHHHHHHHHHHcCCCE
Confidence 11 13334433332211 01110 11 11111 223334433 379999999753 3455677788899999
Q ss_pred EEEEecCCccccccccccc--ccc-----hHHHHHHHHhhcCcEEEeCChhHHHHHHHh---cc----------------
Q 009759 232 VMSYHTHVPVYIPRYTFSW--LVK-----PMWLVIKFLHRAADLTLVPSVAIGKDLEAA---RV---------------- 285 (526)
Q Consensus 232 v~~~h~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~---~~---------------- 285 (526)
|++.|+............+ ... .....++.+++.+|.|+++|+..++.+.+. +.
T Consensus 434 V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~g 513 (816)
T 3s28_A 434 CTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHG 513 (816)
T ss_dssp EEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEES
T ss_pred EEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccc
Confidence 9999986533222111100 000 011236678999999999999988853221 10
Q ss_pred --cCCCcEEEeecCCCCCCCCCCcccHH------------------HHHhhcC-CCCCCcEEEEEecccccccHHHHHHH
Q 009759 286 --TAANKIRIWKKGVDSESFHPRFRSSE------------------MRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRV 344 (526)
Q Consensus 286 --~~~~ki~vi~ngid~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~i~~vG~l~~~Kg~~~li~a 344 (526)
....++.+||||+|.+.|.|...... .+..++. ...++++|+|+||+.+.||++.+++|
T Consensus 514 I~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA 593 (816)
T 3s28_A 514 IDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEW 593 (816)
T ss_dssp CCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHH
T ss_pred cccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHH
Confidence 11239999999999999977643221 0111111 24578899999999999999999999
Q ss_pred HHhC----CCcEEEEEeCCc-----------cHHHHHHHhcCC----CeEEeccc----ChhhHHHHHH-cCcEEEecCC
Q 009759 345 MDRL----PEARIAFIGDGP-----------YREELEKMFTGM----PAVFTGML----LGEELSQAYA-SGDVFVMPSE 400 (526)
Q Consensus 345 ~~~l----~~~~l~ivG~g~-----------~~~~l~~l~~~~----~V~~~g~v----~~~~l~~~~~-~aDv~v~ps~ 400 (526)
++.+ ++++|+|+|+|+ ..+.+++++++. +|.|+|++ +.+++..+|+ ++|++|+||.
T Consensus 594 ~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~ 673 (816)
T 3s28_A 594 YGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPAL 673 (816)
T ss_dssp HHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCC
Confidence 9988 469999999988 556677766643 69999954 4588999998 6799999999
Q ss_pred CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhh----hCHHHHHHHHHHHHHHH-
Q 009759 401 SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL----YNQELRETMGQAARQEM- 475 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll----~d~~~~~~~~~~a~~~~- 475 (526)
+|+||++++||||||+|||+++.||..|++ .++.+|++++++|+++++++|.+++ .|++.++++++++++.+
T Consensus 674 ~EgfglvllEAMA~G~PVIasd~GG~~EiV---~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~ 750 (816)
T 3s28_A 674 YEAFGLTVVEAMTCGLPTFATCKGGPAEII---VHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIE 750 (816)
T ss_dssp CBSSCHHHHHHHHTTCCEEEESSBTHHHHC---CBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHcCCCEEEeCCCChHHHH---ccCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8999999999999999999997776 89999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHH
Q 009759 476 EKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 476 ~~fs~~~~~~~~~~~ly~~~l 496 (526)
++|||+.++++++ ++|+..-
T Consensus 751 ~~fSwe~~a~~ll-~lY~~~g 770 (816)
T 3s28_A 751 EKYTWQIYSQRLL-TLTGVYG 770 (816)
T ss_dssp HSCCHHHHHHHHH-HHHHHHH
T ss_pred HhCCHHHHHHHHH-HHHHHHh
Confidence 6899999999998 8998763
No 13
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1.5e-40 Score=338.56 Aligned_cols=352 Identities=19% Similarity=0.219 Sum_probs=257.8
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCce--eccccccCCCccccccchhc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAK--LIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~ 191 (526)
.++|||++++.. +..||.+.++.+++++|.+.||+|++++........ ..... ..+...+.... ........
T Consensus 38 ~~~mkIl~v~~~---~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 113 (416)
T 2x6q_A 38 LKGRSFVHVNST---SFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTE-EMKELYLN 113 (416)
T ss_dssp TTTCEEEEEESC---SSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCH-HHHHHHHH
T ss_pred hhccEEEEEeCC---CCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccH-HHHHHHHH
Confidence 356999999874 467999999999999999999999999875431100 00000 00000111110 00001111
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEE-
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL- 270 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii- 270 (526)
+...+.+.+++.+||+||+|++....+..+ + . .++|+|++.|+..... ....+...+.++..+|.++
T Consensus 114 ~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~-~-~-~~~p~v~~~h~~~~~~---------~~~~~~~~~~~~~~~~~~i~ 181 (416)
T 2x6q_A 114 VNRENSKFIDLSSFDYVLVHDPQPAALIEF-Y-E-KKSPWLWRCHIDLSSP---------NREFWEFLRRFVEKYDRYIF 181 (416)
T ss_dssp HHHHHHHSSCGGGSSEEEEESSTTGGGGGG-S-C-CCSCEEEECCSCCSSC---------CHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHhhcCCCEEEEeccchhhHHHH-H-H-hcCCEEEEEccccCCc---------cHHHHHHHHHHHHhCCEEEE
Confidence 223445556677999999998754433221 1 2 2389999999865431 1122233444566677665
Q ss_pred eCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCc----ccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHH
Q 009759 271 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF----RSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 346 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~ 346 (526)
++|+..++. .+..++.+||||+|...+.+.. .....+.+++. .++.++|+|+|++.+.||++.++++++
T Consensus 182 ~~s~~~~~~------~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~i~~vGrl~~~Kg~~~li~a~~ 254 (416)
T 2x6q_A 182 HLPEYVQPE------LDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDV-DPEKPIITQVSRFDPWKGIFDVIEIYR 254 (416)
T ss_dssp SSGGGSCTT------SCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTC-CTTSCEEEEECCCCTTSCHHHHHHHHH
T ss_pred echHHHHhh------CCccceEEeCCCCChhhhcccccChhhHHHHHHHhCC-CCCCcEEEEEeccccccCHHHHHHHHH
Confidence 666655432 1346899999999987665432 12344555544 457789999999999999999999998
Q ss_pred hC----CCcEEEEEeCCcc-----HHHHHHHhc----CCCeEEecccC---hhhHHHHHHcCcEEEecCCCCCCcHHHHH
Q 009759 347 RL----PEARIAFIGDGPY-----REELEKMFT----GMPAVFTGMLL---GEELSQAYASGDVFVMPSESETLGLVVLE 410 (526)
Q Consensus 347 ~l----~~~~l~ivG~g~~-----~~~l~~l~~----~~~V~~~g~v~---~~~l~~~~~~aDv~v~ps~~e~~~~~ilE 410 (526)
.+ ++++|+|+|+|+. .+.++++++ ..+|+++|+++ ++++.++|+.||++|+||..||+|++++|
T Consensus 255 ~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lE 334 (416)
T 2x6q_A 255 KVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTE 334 (416)
T ss_dssp HHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHH
T ss_pred HHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHH
Confidence 76 6899999999863 344444443 34799999775 57999999999999999999999999999
Q ss_pred HHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 009759 411 AMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRN 489 (526)
Q Consensus 411 Ama~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~~fs~~~~~~~~~~ 489 (526)
||++|+|||+++.||..|++ .++.+|++++ |+++++++|.++++|++.++++++++++.+ ++|+|+.+++++.
T Consensus 335 Ama~G~PvI~~~~~g~~e~i---~~~~~g~l~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~- 408 (416)
T 2x6q_A 335 AMWKGKPVIGRAVGGIKFQI---VDGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYL- 408 (416)
T ss_dssp HHHTTCCEEEESCHHHHHHC---CBTTTEEEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-
T ss_pred HHHcCCCEEEccCCCChhhe---ecCCCeEEEC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-
Confidence 99999999999999999999 8889999998 999999999999999999999999999998 4899999999997
Q ss_pred HHHHHHH
Q 009759 490 EQYNAAI 496 (526)
Q Consensus 490 ~ly~~~l 496 (526)
++|++++
T Consensus 409 ~~~~~l~ 415 (416)
T 2x6q_A 409 DILNSLG 415 (416)
T ss_dssp HHHHTC-
T ss_pred HHHHHhh
Confidence 8998765
No 14
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.8e-41 Score=340.02 Aligned_cols=357 Identities=15% Similarity=0.130 Sum_probs=264.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||++++..++ + .||.+.++.+++++|+++||+|++++....... ..+..+.. ++............+...+.+
T Consensus 1 MkIl~i~~~~~-~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~v~~---~~~~~~~~~~~~~~~~~~l~~ 74 (374)
T 2iw1_A 1 MIVAFCLYKYF-P-FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC-PKAFELIQ---VPVKSHTNHGRNAEYYAWVQN 74 (374)
T ss_dssp -CEEEECSEEC-T-TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC-CTTCEEEE---CCCCCSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeecC-C-CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC-CCCcEEEE---EccCcccchhhHHHHHHHHHH
Confidence 89999987643 2 599999999999999999999999997532211 12333222 222212112222334557788
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhh--cCcEEEeCChhH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR--AADLTLVPSVAI 276 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~~S~~~ 276 (526)
.+++.+||+||++....... ........+++.+.+.|+.... ..........+++..+. .+|.++++|+..
T Consensus 75 ~i~~~~~Dvv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 147 (374)
T 2iw1_A 75 HLKEHPADRVVGFNKMPGLD-VYFAADVCYAEKVAQEKGFLYR------LTSRYRHYAAFERATFEQGKSTKLMMLTDKQ 147 (374)
T ss_dssp HHHHSCCSEEEESSCCTTCS-EEECCSCCHHHHHHHHCCHHHH------TSHHHHHHHHHHHHHHSTTCCCEEEESCHHH
T ss_pred HHhccCCCEEEEecCCCCce-eeeccccccceeeeecccchhh------hcHHHHHHHHHHHHHhhccCCcEEEEcCHHH
Confidence 88899999999987432110 0000111111222222221110 00011122344555554 699999999999
Q ss_pred HHHHHHhcccCCCcEEEeecCCCCCCCCCCcc---cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC-----
Q 009759 277 GKDLEAARVTAANKIRIWKKGVDSESFHPRFR---SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----- 348 (526)
Q Consensus 277 ~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----- 348 (526)
++.+.+.++.+..++.++|||+|.+.+.+... ....+.+++. .+++++++|+|++.+.||++.++++++.+
T Consensus 148 ~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~ 226 (374)
T 2iw1_A 148 IADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGI-KEQQNLLLQVGSDFGRKGVDRSIEALASLPESLR 226 (374)
T ss_dssp HHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTC-CTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCC-CCCCeEEEEeccchhhcCHHHHHHHHHHhHhccC
Confidence 99999876666789999999999988765432 2345566654 45678999999999999999999999988
Q ss_pred CCcEEEEEeCCccHHHHHHHhcC----CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 349 PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 349 ~~~~l~ivG~g~~~~~l~~l~~~----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
++++|+++|+|+. +.+++++++ .+|+++|+. +++.++|+.||++|+||..|++|++++|||++|+|||+++.|
T Consensus 227 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~ 303 (374)
T 2iw1_A 227 HNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVC 303 (374)
T ss_dssp HTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTS
T ss_pred CceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCCc--ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCC
Confidence 3689999999874 556666553 379999985 789999999999999999999999999999999999999999
Q ss_pred CCCceecccCCCceeEeeC-CCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFN-PGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~-~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l 496 (526)
|..+++ .++.+|++++ ++|+++++++|.++++|++.++++++++++.+++|+|+..++++. ++++..+
T Consensus 304 ~~~e~i---~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l 372 (374)
T 2iw1_A 304 GYAHYI---ADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAA-DIITGGL 372 (374)
T ss_dssp TTTHHH---HHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHH-HHHHCC-
T ss_pred Cchhhh---ccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHhh
Confidence 999999 7889999997 889999999999999999999999999999999899999999986 6766543
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=1.3e-37 Score=314.53 Aligned_cols=348 Identities=10% Similarity=0.026 Sum_probs=235.6
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccC---CCccccc-cchh
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFP---CPWYQKV-PLSL 190 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~ 190 (526)
..++|||++++..++.....|+..++.+++++|+++||+|+|++....... .. ...+..++ ....... ....
T Consensus 43 ~~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~ 118 (413)
T 2x0d_A 43 SIKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNP--KD--LQSFKSFKYVMPEEDKDFALQIV 118 (413)
T ss_dssp CCCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCH--HH--HGGGTTSEECCTTCCCCCSEEEE
T ss_pred CCCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCCh--HH--HHhhhccceeeccCCccccceee
Confidence 456799999998765222345556799999999999999999998643211 00 01111110 0000000 0000
Q ss_pred cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHH----H---hcCCCEEEEEecCCcccccccccccccchHHHHHHHHh
Q 009759 191 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIA----K---LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH 263 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~----~---~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (526)
.+...+...+...++|+||++.+..... +..+. . ..+.+.++.+|+..+...... ..+.+.+..+
T Consensus 119 ~~~~~~~~~~~~~~~Dvv~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~ 190 (413)
T 2x0d_A 119 PFNDRYNRTIPVAKHDIFIATAWWTAYA-AQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWS-------SQYVLAESTY 190 (413)
T ss_dssp ECSCCTTCCEEECTTEEEEECSHHHHHH-HHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSS-------HHHHHHHHTT
T ss_pred eccccccccccCCCCCEEEEehHHHHHH-HHHhhhhhhhhcccccCcEEEEEeechhhcCccC-------hHHHHHHHHh
Confidence 0000011111224799999997532222 11111 1 135688888888765432211 1223455666
Q ss_pred hcCc--EEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecc-cccccHHH
Q 009759 264 RAAD--LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDF 340 (526)
Q Consensus 264 ~~ad--~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l-~~~Kg~~~ 340 (526)
..++ .++++|+.+++.+.+.+. +..++.+++||+|.+.+.+... ...+...++++||+ .+.||++.
T Consensus 191 ~~~~~~~vi~~S~~~~~~l~~~g~-~~~~~~~i~~g~d~~~~~~~~~----------~~~~~~~il~~gr~~~~~Kg~~~ 259 (413)
T 2x0d_A 191 KYRGPQIAVFNSELLKQYFNNKGY-NFTDEYFFQPKINTTLKNYIND----------KRQKEKIILVYGRPSVKRNAFTL 259 (413)
T ss_dssp SCCSCEEEEEESHHHHHHHHHHTC-CCSEEEEECCCCCHHHHTTTTS----------CCCCCSEEEEEECTTCGGGCHHH
T ss_pred ccCCceEEEEcCHHHHHHHHHcCC-CCCceEEeCCCcCchhhccccc----------ccCCCCEEEEEecCchhccCHHH
Confidence 6665 589999999999988743 4457899999998764432100 23456678999997 68899999
Q ss_pred HHHHHHhC----CC---cEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHH
Q 009759 341 LKRVMDRL----PE---ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 413 (526)
Q Consensus 341 li~a~~~l----~~---~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma 413 (526)
+++|++.+ |+ ++|+++|+|+... ++....+|+|+|+++.+++.++|+.||++|+||..|++|++++||||
T Consensus 260 li~A~~~l~~~~~~~~~~~l~ivG~~~~~~---~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA 336 (413)
T 2x0d_A 260 IVEALKIFVQKYDRSNEWKIISVGEKHKDI---ALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAH 336 (413)
T ss_dssp HHHHHHHHHHHCTTGGGCEEEEEESCCCCE---EEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCceEEEEEcCCchhh---hcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHh
Confidence 99999876 44 8999999886542 11122379999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 009759 414 SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 414 ~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~ 493 (526)
||+|||++ .+|..|++ +++.+|++++++|+++++++|.++++|++.+++ ++++.+++|+|++..+++ ++|+
T Consensus 337 ~G~PVV~~-~~g~~e~v---~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~~~~~~~W~~~~~~~--~~~~ 407 (413)
T 2x0d_A 337 FGLRVITN-KYENKDLS---NWHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKESSNMMFYINEFNEF--SFIK 407 (413)
T ss_dssp TTCEEEEE-CBTTBCGG---GTBTTEEEESSCSHHHHHHHHHHHHHHTC----------CCBSCGGGCCCC-----TTHH
T ss_pred CCCcEEEe-CCCcchhh---hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHHHHHhCCHHHHHHHH--HHHH
Confidence 99999995 45678999 888999999999999999999999998887776 566666789999999885 6888
Q ss_pred HHHH
Q 009759 494 AAIW 497 (526)
Q Consensus 494 ~~l~ 497 (526)
++++
T Consensus 408 ~l~~ 411 (413)
T 2x0d_A 408 EIEE 411 (413)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8754
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=5.4e-34 Score=284.67 Aligned_cols=327 Identities=16% Similarity=0.139 Sum_probs=240.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc-c--cCceeccccccCCCccc------cccc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE-F--YGAKLIGSRSFPCPWYQ------KVPL 188 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-~--~~~~~~~~~~~~~~~~~------~~~~ 188 (526)
+|||++++. ..||...++..++++|.++||+|++++........ . .+.....+......... ....
T Consensus 6 ~mkIl~~~~-----~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T 1f0k_A 6 GKRLMVMAG-----GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLR 80 (364)
T ss_dssp -CEEEEECC-----SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHH
T ss_pred CcEEEEEeC-----CCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHHH
Confidence 489999963 23788888999999999999999999976532211 1 12222222111111000 0011
Q ss_pred hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcE
Q 009759 189 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 268 (526)
Q Consensus 189 ~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 268 (526)
.......+.+.+++.+||+||++..... +.+..+++..++|+|++.|+.++. ...+.+.+.+|.
T Consensus 81 ~~~~~~~l~~~l~~~~pDvv~~~~~~~~-~~~~~~~~~~~~p~v~~~~~~~~~---------------~~~~~~~~~~d~ 144 (364)
T 1f0k_A 81 IFNAWRQARAIMKAYKPDVVLGMGGYVS-GPGGLAAWSLGIPVVLHEQNGIAG---------------LTNKWLAKIATK 144 (364)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEECSSTTH-HHHHHHHHHTTCCEEEEECSSSCC---------------HHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCc-hHHHHHHHHcCCCEEEEecCCCCc---------------HHHHHHHHhCCE
Confidence 1223456778888899999999975433 334556777899999999885421 124567788999
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCc-EEEEEecccccccHHHHHHHHHh
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKP-LIVHVGRLGVEKSLDFLKRVMDR 347 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~vG~l~~~Kg~~~li~a~~~ 347 (526)
+++.++.. + + ++.+++||++.+.+.+.. .+..++. ..+.+ ++++.|++.+.|+.+.++++++.
T Consensus 145 v~~~~~~~-------~--~--~~~~i~n~v~~~~~~~~~----~~~~~~~-~~~~~~il~~~g~~~~~k~~~~li~a~~~ 208 (364)
T 1f0k_A 145 VMQAFPGA-------F--P--NAEVVGNPVRTDVLALPL----PQQRLAG-REGPVRVLVVGGSQGARILNQTMPQVAAK 208 (364)
T ss_dssp EEESSTTS-------S--S--SCEECCCCCCHHHHTSCC----HHHHHTT-CCSSEEEEEECTTTCCHHHHHHHHHHHHH
T ss_pred EEecChhh-------c--C--CceEeCCccchhhcccch----hhhhccc-CCCCcEEEEEcCchHhHHHHHHHHHHHHH
Confidence 99988764 1 2 678999999887654421 1233333 23444 45566799999999999999998
Q ss_pred CC-CcE-EEEEeCCccHHHHHHHhcC---CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 348 LP-EAR-IAFIGDGPYREELEKMFTG---MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 348 l~-~~~-l~ivG~g~~~~~l~~l~~~---~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+. +++ ++++|+|+ .+.+++++++ .+|++.|++ +++..+|+.||++|+||. |++++|||++|+|||+++
T Consensus 209 l~~~~~~l~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~ 281 (364)
T 1f0k_A 209 LGDSVTIWHQSGKGS-QQSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVP 281 (364)
T ss_dssp HGGGEEEEEECCTTC-HHHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECC
T ss_pred hcCCcEEEEEcCCch-HHHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEee
Confidence 85 678 56788887 4666665543 279999999 799999999999999983 999999999999999999
Q ss_pred CCCCC--------ceecccCCCceeEeeCCCC--HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 423 AGGIP--------DIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 423 ~gg~~--------e~v~~~~~~~~g~~~~~~d--~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
.+|.. +++ +++ .|++++++| +++++++|.++ |++.++++++++++.+++|+|+.++++++ ++|
T Consensus 282 ~~g~~~~q~~~~~~~~---~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y 354 (364)
T 1f0k_A 282 FQHKDRQQYWNALPLE---KAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVS-RVA 354 (364)
T ss_dssp CCCTTCHHHHHHHHHH---HTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHH-HHH
T ss_pred CCCCchhHHHHHHHHH---hCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHH-HHH
Confidence 99864 355 444 499999888 99999999999 99999999999998888999999999997 888
Q ss_pred HHH
Q 009759 493 NAA 495 (526)
Q Consensus 493 ~~~ 495 (526)
++.
T Consensus 355 ~~~ 357 (364)
T 1f0k_A 355 RAL 357 (364)
T ss_dssp TTC
T ss_pred HHH
Confidence 764
No 17
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=5.5e-35 Score=295.40 Aligned_cols=328 Identities=13% Similarity=0.096 Sum_probs=226.8
Q ss_pred CCCCcEEEEEecc-CCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC------------------ccccCceeccc
Q 009759 115 NSRPRRIALFVEP-SPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP------------------QEFYGAKLIGS 175 (526)
Q Consensus 115 ~~~~mkIliv~~~-~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~------------------~~~~~~~~~~~ 175 (526)
..++|||++++.. +| +..+|.. ..+++.|+++| +|+|++...... +...++.+...
T Consensus 11 ~~~~MkIl~is~~~~p-~~~~~~~---~~l~~~l~~~G-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 85 (406)
T 2hy7_A 11 GIRRPCYLVLSSHDFR-TPRRANI---HFITDQLALRG-TTRFFSLRYSRLSRMKGDMRLPLDDTANTVVSHNGVDCYLW 85 (406)
T ss_dssp --CCSCEEEEESSCTT-SSSCCHH---HHHHHHHHHHS-CEEEEECSCBTTHHHHTCTTGGGGGGTTSEEEETTEEEEEC
T ss_pred CCCCceEEEEecccCC-ChhhhhH---hHHHHHHHhCC-ceEEEEecccHHHHhhccchhhhhccCccceecCCeEEEee
Confidence 3456999999987 66 4444443 45677888999 999995432100 00122222221
Q ss_pred cccCCCccc--cccc----------hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccc
Q 009759 176 RSFPCPWYQ--KVPL----------SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI 243 (526)
Q Consensus 176 ~~~~~~~~~--~~~~----------~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~ 243 (526)
.....+... .... .......+.++++ ++|+||........ ...+++..++|+++++|+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~DvIh~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~- 160 (406)
T 2hy7_A 86 RTTVHPFNTRRSWLRPVEDAMFRWYAAHPPKQLLDWMR--ESDVIVFESGIAVA--FIELAKRVNPAAKLVYRASDGLS- 160 (406)
T ss_dssp CBSSCCCCCCCGGGHHHHHHHHHHHHHCCCHHHHHHHH--HCSEEEEESSGGGG--GHHHHHHHCTTSEEEEEESSCHH-
T ss_pred ccccCCccccchhhhccchhHHHHHHHhHHHHHHHHhc--CCCEEEECCchHHH--HHHHHHHhCCCEEEEEeccchhh-
Confidence 111111100 1000 0112223344444 78999954322111 11345677999999999754210
Q ss_pred cccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCC
Q 009759 244 PRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDK 323 (526)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~ 323 (526)
.. .........++.+++.+|.++++|+..++.+.+.+ ++.+||||+|.+.|.+.... ..+++
T Consensus 161 -~~---~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~-----~i~vipngvd~~~f~~~~~~---------~~~~~ 222 (406)
T 2hy7_A 161 -TI---NVASYIEREFDRVAPTLDVIALVSPAMAAEVVSRD-----NVFHVGHGVDHNLDQLGDPS---------PYAEG 222 (406)
T ss_dssp -HH---TCCHHHHHHHHHHGGGCSEEEESCGGGGGGCSCST-----TEEECCCCBCTTHHHHHCSC---------SCCSS
T ss_pred -cc---cccHHHHHHHHHHHHhCCEEEEcCHHHHHHHHhcC-----CEEEEcCCcChHhcCccccc---------ccCCC
Confidence 00 01223456778889999999999999988876543 89999999998866432111 12234
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESET 403 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~ 403 (526)
++++|+|++.+.||+ +..+.+..++++|+|+|+|+ .+++....+|+|+|+++++++.++|++||++|+||..|+
T Consensus 223 ~~i~~vGrl~~~Kg~--~~~l~~~~~~~~l~ivG~g~----~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~ 296 (406)
T 2hy7_A 223 IHAVAVGSMLFDPEF--FVVASKAFPQVTFHVIGSGM----GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQ 296 (406)
T ss_dssp EEEEEECCTTBCHHH--HHHHHHHCTTEEEEEESCSS----CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSC
T ss_pred cEEEEEeccccccCH--HHHHHHhCCCeEEEEEeCch----HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCccc
Confidence 789999999999999 44445567899999999987 222222347999999999999999999999999999999
Q ss_pred CcHHHHHHH-------HcCCcEEEeCCCCCCceecccCCCceeEe-eCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 009759 404 LGLVVLEAM-------SSGIPVVGVRAGGIPDIIPEDQDGKIGYL-FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 475 (526)
Q Consensus 404 ~~~~ilEAm-------a~G~PvI~~~~gg~~e~v~~~~~~~~g~~-~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~ 475 (526)
+|++++||| |||+|||+++. + .++.+|++ ++++|+++++++|.++++|++ ++..
T Consensus 297 ~~~~~lEAm~Kl~eYla~G~PVIas~~------v---~~~~~G~l~v~~~d~~~la~ai~~ll~~~~---------~~~~ 358 (406)
T 2hy7_A 297 VPVYLADSSMKLLQYDFFGLPAVCPNA------V---VGPYKSRFGYTPGNADSVIAAITQALEAPR---------VRYR 358 (406)
T ss_dssp CCTTHHHHCHHHHHHHHHTCCEEEEGG------G---TCSCSSEEEECTTCHHHHHHHHHHHHHCCC---------CCCS
T ss_pred CchHHHHHHHHHHHHhhCCCcEEEehh------c---ccCcceEEEeCCCCHHHHHHHHHHHHhCcc---------hhhh
Confidence 999999999 99999999987 5 67888999 999999999999999999876 1233
Q ss_pred HhCCHHHHHHHHHHHH--HHHH
Q 009759 476 EKYDWRAATRTIRNEQ--YNAA 495 (526)
Q Consensus 476 ~~fs~~~~~~~~~~~l--y~~~ 495 (526)
++|+|+.++++++ ++ |+++
T Consensus 359 ~~~sw~~~a~~~~-~~~~y~~~ 379 (406)
T 2hy7_A 359 QCLNWSDTTDRVL-DPRAYPET 379 (406)
T ss_dssp CCCBHHHHHHHHH-CGGGSGGG
T ss_pred hcCCHHHHHHHHH-Hhhccccc
Confidence 6899999999997 67 6654
No 18
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=100.00 E-value=5e-33 Score=278.79 Aligned_cols=350 Identities=16% Similarity=0.143 Sum_probs=241.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-C-CeEEEEEeCCCCCccccCceeccccc-cCCCcc----cccc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-G-DEVMVVTTHEGVPQEFYGAKLIGSRS-FPCPWY----QKVP 187 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G-~~V~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~ 187 (526)
+.++|||++++... +. ......+++.|++. | |+|.+++...+...........++.. +..... ....
T Consensus 5 m~~~mkIl~v~~~~--~~----~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (375)
T 3beo_A 5 MTERLKVMTIFGTR--PE----AIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLID 78 (375)
T ss_dssp CSSCEEEEEEECSH--HH----HHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHH
T ss_pred CCcCceEEEEecCc--HH----HHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHH
Confidence 45569999998542 21 12456788888887 4 88877775443211000000011111 011111 0011
Q ss_pred chhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCc
Q 009759 188 LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 267 (526)
Q Consensus 188 ~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 267 (526)
........+.+++++++||+||+|......+.+.++++..++|++++.|+... . .. .... ..+...+.+.+.+|
T Consensus 79 ~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~-~-~~--~~~~--~~~~~~~~~~~~~d 152 (375)
T 3beo_A 79 ITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT-W-DK--YSPY--PEEMNRQLTGVMAD 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC-S-CT--TSST--THHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc-c-cc--cCCC--hhHhhhhHHhhhhh
Confidence 11223456788889999999999876444454556677889999976665421 0 00 0000 11222333456699
Q ss_pred EEEeCChhHHHHHHHhcccCCCcEEEeecC-CCCCCCCCCc-ccHHHHHhhcCCCCCCcEEEEEeccccc-ccHHHHHHH
Q 009759 268 LTLVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGVE-KSLDFLKRV 344 (526)
Q Consensus 268 ~ii~~S~~~~~~l~~~~~~~~~ki~vi~ng-id~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~vG~l~~~-Kg~~~li~a 344 (526)
.++++|+..++.+.+.+ .+.+++.+++|| +|...+.+.. .....+.++ .+++.+++++|++.+. ||++.+++|
T Consensus 153 ~ii~~s~~~~~~~~~~g-~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~---~~~~~vl~~~gr~~~~~K~~~~li~a 228 (375)
T 3beo_A 153 LHFSPTAKSATNLQKEN-KDESRIFITGNTAIDALKTTVKETYSHPVLEKL---GNNRLVLMTAHRRENLGEPMRNMFRA 228 (375)
T ss_dssp EEEESSHHHHHHHHHTT-CCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT---TTSEEEEEECCCGGGTTHHHHHHHHH
T ss_pred eeeCCCHHHHHHHHHcC-CCcccEEEECChhHhhhhhhhhhhhhHHHHHhc---cCCCeEEEEecccccchhHHHHHHHH
Confidence 99999999999998764 456789999999 7765443221 122333332 2345567899999876 999999999
Q ss_pred HHhC----CCcEEEEEeCCcc---HHHHHHHhcC-CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCC
Q 009759 345 MDRL----PEARIAFIGDGPY---REELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 416 (526)
Q Consensus 345 ~~~l----~~~~l~ivG~g~~---~~~l~~l~~~-~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~ 416 (526)
++.+ +++++++ |.|+. .+.++++... .+|.|.|+++..++..+|+.||++|+|| |++++|||++|+
T Consensus 229 ~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~ 302 (375)
T 3beo_A 229 IKRLVDKHEDVQVVY-PVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGV 302 (375)
T ss_dssp HHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTC
T ss_pred HHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCC
Confidence 9765 6788654 65543 3455555432 4899999999899999999999999998 777999999999
Q ss_pred cEEEeCC-CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009759 417 PVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 417 PvI~~~~-gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly 492 (526)
|||+++. |+..+++ +++ +|++++. |+++++++|.++++|++.+++|+++++++.++|+|+.+++.+. +++
T Consensus 303 Pvi~~~~~~~~~e~v---~~g-~g~~v~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 373 (375)
T 3beo_A 303 PVLVLRDTTERPEGI---EAG-TLKLAGT-DEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAIL-KHF 373 (375)
T ss_dssp CEEECSSCCSCHHHH---HTT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHH-HHT
T ss_pred CEEEecCCCCCceee---cCC-ceEEcCC-CHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHH-HHh
Confidence 9999964 8999998 777 9999976 9999999999999999999999999887777899999999886 444
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=100.00 E-value=5e-33 Score=279.79 Aligned_cols=355 Identities=14% Similarity=0.070 Sum_probs=244.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC-eEEEEEeCCCCCccccCceeccccc-cCCCccc--cccc--hhcc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD-EVMVVTTHEGVPQEFYGAKLIGSRS-FPCPWYQ--KVPL--SLAL 192 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~-~V~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~ 192 (526)
|||++++... +....+..++++|+++|+ +|.++................++.. +...... .... ....
T Consensus 1 mkIl~v~~~~------~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (384)
T 1vgv_A 1 MKVLTVFGTR------PEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRI 74 (384)
T ss_dssp CEEEEEECSH------HHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHH
T ss_pred CeEEEEeccc------HHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHH
Confidence 8999987531 123446789999999994 8887765432111000001111111 1111110 0010 1223
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHH-HhhcCcEEEe
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF-LHRAADLTLV 271 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ii~ 271 (526)
...+.+++++.+||+||+++.....+.+.++++..++|++++.|+..... . ... ......+. +.+.+|.+++
T Consensus 75 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~--~--~~~---~~~~~~~~~~~~~~d~ii~ 147 (384)
T 1vgv_A 75 LEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD--L--YSP---WPEEANRTLTGHLAMYHFS 147 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC--T--TSS---TTHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc--c--cCC---CchHhhHHHHHhhccEEEc
Confidence 46788889999999999997644445555667788999998888753210 0 000 11122333 3567999999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCC-CCCCCCCCc------ccHHHHHhhc-CCCCCCcEEEEEeccccc-ccHHHHH
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF------RSSEMRWRLS-NGEPDKPLIVHVGRLGVE-KSLDFLK 342 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngi-d~~~~~~~~------~~~~~~~~~~-~~~~~~~~i~~vG~l~~~-Kg~~~li 342 (526)
+|+..++.+.+.+ .+.+++.+++||+ |...+.+.. .....+.+++ ...+++.+++++||+... ||++.++
T Consensus 148 ~s~~~~~~l~~~g-~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li 226 (384)
T 1vgv_A 148 PTETSRQNLLREN-VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEIC 226 (384)
T ss_dssp SSHHHHHHHHHTT-CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHH
T ss_pred CcHHHHHHHHHcC-CChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHH
Confidence 9999999998764 4567899999995 322111100 0012333333 222344578899999876 9999999
Q ss_pred HHHHhC----CCcEEEEE-eCCc-cHHHHHHHhcC-CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcC
Q 009759 343 RVMDRL----PEARIAFI-GDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 415 (526)
Q Consensus 343 ~a~~~l----~~~~l~iv-G~g~-~~~~l~~l~~~-~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G 415 (526)
+|+..+ +++++++. |.++ ..+.++++... .+|.+.|+++.+++.++|+.||++|+|| |+.++|||++|
T Consensus 227 ~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G 301 (384)
T 1vgv_A 227 HALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLG 301 (384)
T ss_dssp HHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGT
T ss_pred HHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcC
Confidence 999765 68888885 5443 55667666543 4899999998899999999999999999 44489999999
Q ss_pred CcEEEeCC-CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 009759 416 IPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 494 (526)
Q Consensus 416 ~PvI~~~~-gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~ 494 (526)
+|||+++. |+..+++ +++ +|+++++ |+++++++|.++++|++.+++|+++++++.+.|+|+.+++.+. ++|++
T Consensus 302 ~PvI~~~~~~~~~e~v---~~g-~g~lv~~-d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~ 375 (384)
T 1vgv_A 302 KPVLVMRDTTERPEAV---TAG-TVRLVGT-DKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALK-NNRIS 375 (384)
T ss_dssp CCEEEESSCCSCHHHH---HHT-SEEEECS-SHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHH-HTCCC
T ss_pred CCEEEccCCCCcchhh---hCC-ceEEeCC-CHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHH-HHHHh
Confidence 99999986 8889988 667 9999977 9999999999999999999999998887767899999999996 77776
Q ss_pred HHHH
Q 009759 495 AIWF 498 (526)
Q Consensus 495 ~l~~ 498 (526)
+...
T Consensus 376 ~~~~ 379 (384)
T 1vgv_A 376 LGSH 379 (384)
T ss_dssp C---
T ss_pred hccc
Confidence 6543
No 20
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.98 E-value=3.1e-31 Score=280.66 Aligned_cols=331 Identities=10% Similarity=0.034 Sum_probs=241.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHH--HHHCCCeEEEEEeCCCCCcccc-CceeccccccCCCccccccchhc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKY--LREMGDEVMVVTTHEGVPQEFY-GAKLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~--L~~~G~~V~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 191 (526)
..++|||++++..+ ..||.+..+.++++. +.+.||+|++++.......... ...... ...... ..
T Consensus 202 ~~~~~rI~~~~~~~---~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~ 269 (568)
T 2vsy_A 202 SKGPLRVGFVSNGF---GAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVT--------AL 269 (568)
T ss_dssp SSSCEEEEEEESCS---SSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECT--------TC
T ss_pred CCCCeEEEEECccc---ccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECC--------CC
Confidence 46779999998753 347889999999999 7888999999987532111110 000000 000000 11
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHH-HHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEE
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 270 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 270 (526)
....+.+.+++.+|||||.+..+... ....+ + ....|++++.|++.... . .... .+..+|.++
T Consensus 270 ~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~---~~~~----------~~~~~d~~i 333 (568)
T 2vsy_A 270 GHLATAKHIRHHGIDLLFDLRGWGGGGRPEVF-A-LRPAPVQVNWLAYPGTS-G---APWM----------DYVLGDAFA 333 (568)
T ss_dssp CHHHHHHHHHHTTCSEEEECSSCTTCSSCHHH-H-TCCSSEEEEESSSSSCC-C---CTTC----------CEEEECTTT
T ss_pred CHHHHHHHHHhCCCCEEEECCCCCCcchHHHH-h-cCCCceeEeeecCCccc-C---CCCc----------eEEEECCCc
Confidence 24578888999999999986543211 11122 2 23568888888643211 0 0000 122478888
Q ss_pred eCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC--
Q 009759 271 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 348 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l-- 348 (526)
++|+..++ +. +++.+|||.+......+.......+.++++ ++..+++++|++.+ ||++.+++++..+
T Consensus 334 ~~s~~~~~-----~~---~~i~~ipn~~~~~~~~~~~~~~~~r~~~~~--~~~~~v~~~g~~~~-K~~~~li~a~~~l~~ 402 (568)
T 2vsy_A 334 LPPALEPF-----YS---EHVLRLQGAFQPSDTSRVVAEPPSRTQCGL--PEQGVVLCCFNNSY-KLNPQSMARMLAVLR 402 (568)
T ss_dssp SCTTTGGG-----CS---SEEEECSSCSCCCCTTCCCCCCCCTGGGTC--CTTSCEEEECCCGG-GCCHHHHHHHHHHHH
T ss_pred CCcccccC-----Cc---ceeEcCCCcCCCCCCCCCCCCCCCccccCC--CCCCEEEEeCCccc-cCCHHHHHHHHHHHH
Confidence 88886543 22 689999996554322111112223334433 33446679999999 9999999998765
Q ss_pred --CCcEEEEEe-CCccHHHHHHHhcC-----CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEE
Q 009759 349 --PEARIAFIG-DGPYREELEKMFTG-----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 420 (526)
Q Consensus 349 --~~~~l~ivG-~g~~~~~l~~l~~~-----~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~ 420 (526)
|+++|+|+| +|+..+.+++++.+ .+|+|+|+++++++..+|+.||++|+||.+ |+|++++|||+||+|||+
T Consensus 403 ~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~ 481 (568)
T 2vsy_A 403 EVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLT 481 (568)
T ss_dssp HCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEB
T ss_pred hCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEe
Confidence 799999999 88888888877763 359999999999999999999999999999 999999999999999999
Q ss_pred -------eCCC-------CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH---HhCCHHHH
Q 009759 421 -------VRAG-------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM---EKYDWRAA 483 (526)
Q Consensus 421 -------~~~g-------g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~---~~fs~~~~ 483 (526)
+++| |+.|++ .+ |+++++++|.++++|++.++++++++++.+ +.|+|+.+
T Consensus 482 ~~g~~~~s~~~~~~l~~~g~~e~v---~~----------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 548 (568)
T 2vsy_A 482 TPGETFAARVAGSLNHHLGLDEMN---VA----------DDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGF 548 (568)
T ss_dssp CCCSSGGGSHHHHHHHHHTCGGGB---CS----------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHH
T ss_pred ccCCCchHHHHHHHHHHCCChhhh---cC----------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHH
Confidence 9999 999988 33 899999999999999999999999999998 57999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009759 484 TRTIRNEQYNAAIWFW 499 (526)
Q Consensus 484 ~~~~~~~ly~~~l~~~ 499 (526)
+++++ ++|+++++++
T Consensus 549 ~~~~~-~~y~~~~~~~ 563 (568)
T 2vsy_A 549 ADDFG-ALLQALARRH 563 (568)
T ss_dssp HHHHH-HHHHHHHHTT
T ss_pred HHHHH-HHHHHHHHHH
Confidence 99997 8999998765
No 21
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=2e-29 Score=257.84 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=207.1
Q ss_pred cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccc----cc---cc-cc----------cccchHHHHHHHHhh
Q 009759 203 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI----PR---YT-FS----------WLVKPMWLVIKFLHR 264 (526)
Q Consensus 203 ~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----~~---~~-~~----------~~~~~~~~~~~~~~~ 264 (526)
++|||+|+|+|.......++..+..++++|+++|....... .. +. .. ........+++....
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 46899999999776655555445669999999999631100 00 00 00 001123467888999
Q ss_pred cCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcc----cHHHHHhh----------cCCC--CCCcEEEE
Q 009759 265 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR----SSEMRWRL----------SNGE--PDKPLIVH 328 (526)
Q Consensus 265 ~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~----~~~~~~~~----------~~~~--~~~~~i~~ 328 (526)
.||.|+|+|+.+++++...+..+.+.+ |+||||.+.|.|... +...+.++ ++.. ++.+++..
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifi 337 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFI 337 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEE
T ss_pred hCCEEEECCHHHHHHHHHHhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEEE
Confidence 999999999999999999876554544 999999999988521 11111111 1222 34455666
Q ss_pred Eeccc-ccccHHHHHHHHHhCC--------C---cEEEEEeCCc---cH-------------------------------
Q 009759 329 VGRLG-VEKSLDFLKRVMDRLP--------E---ARIAFIGDGP---YR------------------------------- 362 (526)
Q Consensus 329 vG~l~-~~Kg~~~li~a~~~l~--------~---~~l~ivG~g~---~~------------------------------- 362 (526)
+||+. .+||+|.+++|+.++. + +.|+++..+. ..
T Consensus 338 vgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 417 (725)
T 3nb0_A 338 AGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHA 417 (725)
T ss_dssp ESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 89998 7899999999998762 1 5667765331 00
Q ss_pred ----------------H------H---HH------------------------------HHhc--C------C--CeEEe
Q 009759 363 ----------------E------E---LE------------------------------KMFT--G------M--PAVFT 377 (526)
Q Consensus 363 ----------------~------~---l~------------------------------~l~~--~------~--~V~~~ 377 (526)
+ . ++ ..++ + . +|.|+
T Consensus 418 ~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf~ 497 (725)
T 3nb0_A 418 IRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFH 497 (725)
T ss_dssp HHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEEC
T ss_pred hcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEEe
Confidence 0 0 00 0000 0 0 13444
Q ss_pred -cccChh------hHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCC-------ceeEeeC
Q 009759 378 -GMLLGE------ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG-------KIGYLFN 443 (526)
Q Consensus 378 -g~v~~~------~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~-------~~g~~~~ 443 (526)
++++.. ++.++|+.||++|+||.+|+||++++||||||+|||+++.||+.+.+ .++ .+|+++.
T Consensus 498 P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V---~dg~~~~~~~~tG~lV~ 574 (725)
T 3nb0_A 498 PEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYM---EDLIETNQAKDYGIYIV 574 (725)
T ss_dssp CSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHH---HTTSCHHHHHHTTEEEE
T ss_pred ccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhh---hccccccCCCCceEEEe
Confidence 677665 58999999999999999999999999999999999999999999998 544 4688773
Q ss_pred ---CCCHHHHHHHHHHhhh-----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Q 009759 444 ---PGDLDDCLSKLEPLLY-----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRK 501 (526)
Q Consensus 444 ---~~d~~~la~ai~~ll~-----d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~~~~~ 501 (526)
+.|+++++++|.+++. ++..+..+++++++.+++|+|++++++++ ++|++++.+...
T Consensus 575 ~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl-~~Ye~aL~~~~~ 639 (725)
T 3nb0_A 575 DRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYV-KARQLALRRGYP 639 (725)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHH-HHHHHHHHHHCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhccc
Confidence 4466666666655543 68888999999988888999999999998 899999976543
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=7.8e-29 Score=253.23 Aligned_cols=275 Identities=16% Similarity=0.116 Sum_probs=206.1
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
.+|+||+|+++...+..++.....++|+++++|..++.........+ ...+.+ .+-.+|.+...+....+.+...
T Consensus 123 ~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~~~~~~~lp~----~~~il~-~ll~~d~i~f~~~~~~~~f~~~ 197 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPT----YDTLLE-QLCDYDLLGFQTENDRLAFLDC 197 (482)
T ss_dssp TTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCHHHHTTSTT----HHHHHH-HHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCCHHHHhhCcc----HHHHHH-hhhccCeEEEECHHHHHHHHHH
Confidence 56999999987666665554455589999999997653211111111 111222 2345788888777666555421
Q ss_pred -----------------cccCCCcEEEeecCCCCCCCCCCcc------cHHHHHhhcCCCCCCcEEEEEecccccccHHH
Q 009759 284 -----------------RVTAANKIRIWKKGVDSESFHPRFR------SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF 340 (526)
Q Consensus 284 -----------------~~~~~~ki~vi~ngid~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~ 340 (526)
++ ...++.++|||||.+.|.+... ...++.+++ ++++|+++||+++.||++.
T Consensus 198 ~~~~l~~~~~~~~~~~~~g-~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~----~~~vil~VgRl~~~Kgi~~ 272 (482)
T 1uqt_A 198 LSNLTRVTTRSAKSHTAWG-KAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK----NVQNIFSVERLDYSKGLPE 272 (482)
T ss_dssp HHHHSCEEEETTTEEEETT-EEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT----TCEEEEEECCBCGGGCHHH
T ss_pred HHHHhCCccccCCeEEECC-eEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC----CCEEEEEEeCCcccCCHHH
Confidence 11 2357899999999887643211 234444442 6789999999999999999
Q ss_pred HHHHHHhC----C----CcEEEEEeC-----Cc----cHHHHHHHhcC----------CCeEE-ecccChhhHHHHHHcC
Q 009759 341 LKRVMDRL----P----EARIAFIGD-----GP----YREELEKMFTG----------MPAVF-TGMLLGEELSQAYASG 392 (526)
Q Consensus 341 li~a~~~l----~----~~~l~ivG~-----g~----~~~~l~~l~~~----------~~V~~-~g~v~~~~l~~~~~~a 392 (526)
+++|++.+ | +++|+++|. ++ ..+++++++.+ .+|.+ .|.++.+++..+|+.|
T Consensus 273 ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~A 352 (482)
T 1uqt_A 273 RFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYS 352 (482)
T ss_dssp HHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHc
Confidence 99999866 3 367999984 22 23344444332 13664 6899999999999999
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCC-----cEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh-CHHHHHH
Q 009759 393 DVFVMPSESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRET 466 (526)
Q Consensus 393 Dv~v~ps~~e~~~~~ilEAma~G~-----PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~ 466 (526)
|++|+||..||||++++||||||+ |+|+++.+|..+.+ . +|+++++.|+++++++|.++++ +++.+++
T Consensus 353 Dv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l---~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~ 426 (482)
T 1uqt_A 353 DVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAALDRALTMSLAERIS 426 (482)
T ss_dssp SEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC---T---TSEEECTTCHHHHHHHHHHHHTCCHHHHHH
T ss_pred cEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh---C---CeEEECCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999997 89999988888877 3 6899999999999999999998 5678999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 009759 467 MGQAARQEMEKYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 467 ~~~~a~~~~~~fs~~~~~~~~~~~ly~~~ 495 (526)
+++++++.+++|+|+.++++++ +.|+++
T Consensus 427 ~~~~~~~~v~~~s~~~~a~~~l-~~l~~~ 454 (482)
T 1uqt_A 427 RHAEMLDVIVKNDINHWQECFI-SDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHH-HHHHhc
Confidence 9999999998899999999998 677665
No 23
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.96 E-value=2.3e-27 Score=237.76 Aligned_cols=345 Identities=17% Similarity=0.147 Sum_probs=226.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccc-cCCCccc-cc---cchhcc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRS-FPCPWYQ-KV---PLSLAL 192 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~---~~~~~~ 192 (526)
|||++++...+ .. .....++++|.+. ||+|.+++...............++.. +...... .. ......
T Consensus 6 mkIl~v~~~~~--~~----~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (376)
T 1v4v_A 6 KRVVLAFGTRP--EA----TKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARI 79 (376)
T ss_dssp EEEEEEECSHH--HH----HHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHH
T ss_pred eEEEEEEeccH--HH----HHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHHHHHH
Confidence 89999986421 11 2346789999998 799888765432110000001111110 0111100 00 001123
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
...+.+++++++||+||+|+.....+.+.++++..++|++...++... . .....+ ......+.+.+.+|.++++
T Consensus 80 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~~~~~~~~ 153 (376)
T 1v4v_A 80 LPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS-G--NLKEPF---PEEANRRLTDVLTDLDFAP 153 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC-S--CTTSST---THHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc-c--cccCCC---chHHHHHHHHHHhceeeCC
Confidence 456778888999999999976555555566778889998643333211 1 000000 1113344566779999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeecCC-CCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC---
Q 009759 273 SVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 348 (526)
Q Consensus 273 S~~~~~~l~~~~~~~~~ki~vi~ngi-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l--- 348 (526)
|+..++.+.+.+ .+.+++.+++|++ |...+.+. ....+.+ + .+++.+++++||+...||++.+++|++.+
T Consensus 154 s~~~~~~l~~~g-~~~~ki~vi~n~~~d~~~~~~~--~~~~~~~--~-~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~ 227 (376)
T 1v4v_A 154 TPLAKANLLKEG-KREEGILVTGQTGVDAVLLAAK--LGRLPEG--L-PEGPYVTVTMHRRENWPLLSDLAQALKRVAEA 227 (376)
T ss_dssp SHHHHHHHHTTT-CCGGGEEECCCHHHHHHHHHHH--HCCCCTT--C-CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC-CCcceEEEECCchHHHHhhhhh--hhHHHHh--c-CCCCEEEEEeCcccchHHHHHHHHHHHHHHhh
Confidence 999999998764 3567899999865 32111000 0000011 1 23445677899998888999999999765
Q ss_pred -CCcEEEEE-eCCc-cHHHHHHHhcC-CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe-CC
Q 009759 349 -PEARIAFI-GDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RA 423 (526)
Q Consensus 349 -~~~~l~iv-G~g~-~~~~l~~l~~~-~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~-~~ 423 (526)
++++++++ |.++ ..+.+++++.. .+|.+.|+++..++..+|+.||++|.|| +..++|||++|+|||++ +.
T Consensus 228 ~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-----~g~~lEA~a~G~PvI~~~~~ 302 (376)
T 1v4v_A 228 FPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-----GGLQEEGAALGVPVVVLRNV 302 (376)
T ss_dssp CTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-----HHHHHHHHHTTCCEEECSSS
T ss_pred CCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-----cCHHHHHHHcCCCEEeccCC
Confidence 68898886 7665 56777776543 4799999888889999999999999998 33488999999999987 56
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l 496 (526)
++..+++ +++ +|++++ .|+++++++|.++++|++.+++|++++ +.|.+...++++. +++.+++
T Consensus 303 ~~~~~~~---~~g-~g~lv~-~d~~~la~~i~~ll~d~~~~~~~~~~~----~~~~~~~~~~~i~-~~i~~~~ 365 (376)
T 1v4v_A 303 TERPEGL---KAG-ILKLAG-TDPEGVYRVVKGLLENPEELSRMRKAK----NPYGDGKAGLMVA-RGVAWRL 365 (376)
T ss_dssp CSCHHHH---HHT-SEEECC-SCHHHHHHHHHHHHTCHHHHHHHHHSC----CSSCCSCHHHHHH-HHHHHHT
T ss_pred Ccchhhh---cCC-ceEECC-CCHHHHHHHHHHHHhChHhhhhhcccC----CCCCCChHHHHHH-HHHHHHh
Confidence 8888877 444 788885 499999999999999999999988633 4566666777776 5555544
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.95 E-value=8.2e-27 Score=235.18 Aligned_cols=275 Identities=14% Similarity=0.087 Sum_probs=212.1
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHh
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 283 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~ 283 (526)
.-|+|++|+++.+.++.++..+..+.++.+.+|..+|...--.... ..++......+-.+|.|.+.+....+.+.+.
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp---~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILP---KEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHHHTTSC---HHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCCHHHHhhCc---HhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 4689999999998888887777789999999999876432211111 1012223344567999999999888775442
Q ss_pred ----c-cc-------------CCCcEEEeecCCCCCCCCCCcc--cHHHHHhhcCCCCCCcEEEEEecccccccHHHHHH
Q 009759 284 ----R-VT-------------AANKIRIWKKGVDSESFHPRFR--SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 343 (526)
Q Consensus 284 ----~-~~-------------~~~ki~vi~ngid~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~ 343 (526)
. +. ...++.++|+|||.+.|.+... ...++.+++ ++++|+++||+++.||++.+++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~----~~~lIl~VgRLd~~KGi~~lL~ 301 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD----GHRLVVHSGRTDPIKNAERAVR 301 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT----TSEEEEEEEESSGGGCHHHHHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC----CceEEEEcccCccccCHHHHHH
Confidence 1 11 1136789999999998876532 244555553 5789999999999999999999
Q ss_pred HHHhC----CC---cEEEEEe-----CCccH----HHHHHHhcCC-------CeEEecccChhhHHHHHHcCcEEEecCC
Q 009759 344 VMDRL----PE---ARIAFIG-----DGPYR----EELEKMFTGM-------PAVFTGMLLGEELSQAYASGDVFVMPSE 400 (526)
Q Consensus 344 a~~~l----~~---~~l~ivG-----~g~~~----~~l~~l~~~~-------~V~~~g~v~~~~l~~~~~~aDv~v~ps~ 400 (526)
|+ ++ |+ +.|+++| +++.. +++++++.+. .|+|+|.++.+++..+|+.||++|+||.
T Consensus 302 Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~Sl 380 (496)
T 3t5t_A 302 AF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNST 380 (496)
T ss_dssp HH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCS
T ss_pred HH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcc
Confidence 99 55 54 4577776 33332 3444443322 5999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHcC---CcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC-HHHHHHHHHHHHHHHH
Q 009759 401 SETLGLVVLEAMSSG---IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEME 476 (526)
Q Consensus 401 ~e~~~~~ilEAma~G---~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d-~~~~~~~~~~a~~~~~ 476 (526)
.||||++.+|||||| .|+|+|..+|..+.+ +.+|+++++.|+++++++|.+++.+ ++.++++.++.++.++
T Consensus 381 rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l-----~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~ 455 (496)
T 3t5t_A 381 VDGQNLSTFEAPLVNERDADVILSETCGAAEVL-----GEYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAAR 455 (496)
T ss_dssp SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH-----GGGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh-----CCCEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999997 899999999988888 3479999999999999999999985 5788888999999999
Q ss_pred hCCHHHHHHHHHHHH
Q 009759 477 KYDWRAATRTIRNEQ 491 (526)
Q Consensus 477 ~fs~~~~~~~~~~~l 491 (526)
++++...++.+++++
T Consensus 456 ~~d~~~W~~~fl~~L 470 (496)
T 3t5t_A 456 PWTLEAWVQAQLDGL 470 (496)
T ss_dssp TCBHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHH
Confidence 999999999998655
No 25
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=2.7e-27 Score=215.20 Aligned_cols=180 Identities=23% Similarity=0.335 Sum_probs=158.4
Q ss_pred eecCCCCCCCC--CCcc-----cHHHHHhhcCCCCCCcEEEEEeccc-ccccHHHHHHHHHhC------CCcEEEEEeCC
Q 009759 294 WKKGVDSESFH--PRFR-----SSEMRWRLSNGEPDKPLIVHVGRLG-VEKSLDFLKRVMDRL------PEARIAFIGDG 359 (526)
Q Consensus 294 i~ngid~~~~~--~~~~-----~~~~~~~~~~~~~~~~~i~~vG~l~-~~Kg~~~li~a~~~l------~~~~l~ivG~g 359 (526)
||||+|.+.|. +... ....+.+++. ++.++|+|+|++. +.||++.++++++.+ ++++|+|+|.+
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~~--~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~ 79 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFGM--DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG 79 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTTC--CSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcCC--CCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 79999999998 7643 5566666654 3556999999999 999999999999877 47999999998
Q ss_pred c--cHHHHHHHhcCC-CeEE-ecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCC
Q 009759 360 P--YREELEKMFTGM-PAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD 435 (526)
Q Consensus 360 ~--~~~~l~~l~~~~-~V~~-~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~ 435 (526)
+ ..+.+++++++. +|++ +|+++++++..+|+.||++|+||..|++|++++|||++|+|||+++.++..+++ +
T Consensus 80 ~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~----~ 155 (200)
T 2bfw_A 80 DPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII----T 155 (200)
T ss_dssp CHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC----C
T ss_pred ChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc----C
Confidence 8 778888877755 7999 999999999999999999999999999999999999999999999999999988 4
Q ss_pred CceeEeeCCCCHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHhCC
Q 009759 436 GKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYD 479 (526)
Q Consensus 436 ~~~g~~~~~~d~~~la~ai~~ll~-d~~~~~~~~~~a~~~~~~fs 479 (526)
+.+|++++++|+++++++|.++++ |++.++++++++++.+++||
T Consensus 156 ~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~fs 200 (200)
T 2bfw_A 156 NETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 200 (200)
T ss_dssp TTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999 99999999999999985575
No 26
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.95 E-value=4.4e-27 Score=207.05 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=138.4
Q ss_pred CcEEEEEecccccccHHHHHHHHHhC---CCcEEEEEeCCccHHHHHHHhcCC--CeEEecccChhhHHHHHHcCcEEEe
Q 009759 323 KPLIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVM 397 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~a~~~l---~~~~l~ivG~g~~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~aDv~v~ 397 (526)
+++|+|+|++.+.||++.++++++.+ ++++|+++|+|+..+.+++++++. +|.+ |+++.+++..+|+.||++|+
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 46899999999999999999999998 479999999999888888887754 6888 99999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHcCC-cEEE-eCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 009759 398 PSESETLGLVVLEAMSSGI-PVVG-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 475 (526)
Q Consensus 398 ps~~e~~~~~ilEAma~G~-PvI~-~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~ 475 (526)
||..|++|++++|||++|+ |||+ ++.|+..+++ .++.+ +++++|+++++++|.++++|++.++++++++++.+
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 155 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQFA---LDERS--LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSA 155 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC---SSGGG--EECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc---cCCce--EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999 5688899998 55543 77888999999999999999999999999999999
Q ss_pred HhCCHHHHHHH
Q 009759 476 EKYDWRAATRT 486 (526)
Q Consensus 476 ~~fs~~~~~~~ 486 (526)
++|+|+.++++
T Consensus 156 ~~~s~~~~~~~ 166 (166)
T 3qhp_A 156 LNYTLENSVIQ 166 (166)
T ss_dssp HHHC-------
T ss_pred HHCChhhhhcC
Confidence 99999998763
No 27
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.94 E-value=3.3e-25 Score=216.03 Aligned_cols=317 Identities=15% Similarity=0.056 Sum_probs=220.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.-|++-+.....+ ....++...-....+.+.+.|++-.-+...+...... -.....+
T Consensus 9 ~~m~~~i~~~~~~-~~~~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~----------------------~~~~~~~ 65 (339)
T 3rhz_A 9 ACMRVYITNINGQ-SIQSTAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSE----------------------SELSKRL 65 (339)
T ss_dssp -CCCEEEEEEESS-CTTCHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCH----------------------HHHHHHH
T ss_pred hhhheeeecccCc-cccchHHHHHHHHHHHHHHCCCeEEEeeccccccccH----------------------HHHHHHH
Confidence 3478755544322 3445666666777778888899866554211100000 0001122
Q ss_pred HHHHHh-cCCCEEEECCCchH--HHHHHHHHH--hcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 197 ISEVAR-FKPDIIHASSPGIM--VFGALIIAK--LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 197 ~~~l~~-~~pDiV~~~~~~~~--~~~~~~~~~--~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
..++.. .++|+|+++.|... .+...++.+ ..++|+|+.+||.++..... .+.....++.+++.||.|++
T Consensus 66 ~~~~~~~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~~------~~~~~~~E~~~y~~aD~Ii~ 139 (339)
T 3rhz_A 66 DGIVAGLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSG------NFYLMDRTIAYYNKADVVVA 139 (339)
T ss_dssp HHHTTTCCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCGG------GGGGHHHHHHHHTTCSEEEE
T ss_pred HHHHhcCCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCcc------chhhHHHHHHHHHHCCEEEE
Confidence 222322 37899999987642 222233333 44999999999987754322 11223468999999999999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCc
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEA 351 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~ 351 (526)
+|+.+++.+.+.+. +..++.++++. |... +.... ...++++|+|+|+++....++.+ .+++
T Consensus 140 ~S~~~~~~l~~~G~-~~~ki~~~~~~-~~~~--~~~~~---------~~~~~~~i~yaG~l~k~~~L~~l------~~~~ 200 (339)
T 3rhz_A 140 PSQKMIDKLRDFGM-NVSKTVVQGMW-DHPT--QAPMF---------PAGLKREIHFPGNPERFSFVKEW------KYDI 200 (339)
T ss_dssp SCHHHHHHHHHTTC-CCSEEEECCSC-CCCC--CCCCC---------CCEEEEEEEECSCTTTCGGGGGC------CCSS
T ss_pred CCHHHHHHHHHcCC-CcCceeecCCC-CccC--ccccc---------ccCCCcEEEEeCCcchhhHHHhC------CCCC
Confidence 99999999998764 44666554432 2211 11000 13356789999999854333221 2789
Q ss_pred EEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCC-------CCCcHHHHHHHHcCCcEEEeCCC
Q 009759 352 RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-------ETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 352 ~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~-------e~~~~~ilEAma~G~PvI~~~~g 424 (526)
+|+|+|+|+.. . .. ||+|+|+++.+++..+|+.+|+.++.... ..+|.+++||||+|+|||+++.+
T Consensus 201 ~f~ivG~G~~~----~--l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~ 273 (339)
T 3rhz_A 201 PLKVYTWQNVE----L--PQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGI 273 (339)
T ss_dssp CEEEEESCCCC----C--CT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTC
T ss_pred eEEEEeCCccc----C--cC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccCh
Confidence 99999999864 1 22 89999999999999999999998886211 24699999999999999999999
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~ 495 (526)
+..+++ +++.+|++++ +.++++++|..+ +++.+++|++++++..+++++....++.+.+.+.++
T Consensus 274 ~~~~~v---~~~~~G~~~~--~~~e~~~~i~~l--~~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 274 ANQELI---ENNGLGWIVK--DVEEAIMKVKNV--NEDEYIELVKNVRSFNPILRKGFFTRRLLTESVFQA 337 (339)
T ss_dssp TTTHHH---HHHTCEEEES--SHHHHHHHHHHC--CHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHH---HhCCeEEEeC--CHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999 8889999997 789999999987 567799999999999888888888888776665554
No 28
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.94 E-value=3.1e-26 Score=228.52 Aligned_cols=290 Identities=14% Similarity=0.089 Sum_probs=203.7
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceecccc--ccCCCccccccchhcccHHHHHHHHhcCCCEEEEC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSR--SFPCPWYQKVPLSLALSPRIISEVARFKPDIIHAS 211 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~ 211 (526)
.|....+..|+++|.++| +|.+.+............. .++. .. .+ +.....+.+++++.+||+||++
T Consensus 50 ~G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~~~~~~~~-~~v~~~~~-~p--------~~~~~~l~~~l~~~~pDiv~~~ 118 (374)
T 2xci_A 50 IGEFNTFLPILKELKREH-RILLTYFSPRAREYLKTKS-DFYDCLHP-LP--------LDNPFSVKRFEELSKPKALIVV 118 (374)
T ss_dssp HHHHHHHHHHHHHHHHHS-CEEEEESCGGGHHHHHTTG-GGCSEEEE-CC--------CSSHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEcCCcHHHHHHHhc-ccccceeE-CC--------CCCHHHHHHHHHHhCCCEEEEE
Confidence 477788999999999999 8876665332111001000 1111 11 11 1234678889999999999986
Q ss_pred CCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcE
Q 009759 212 SPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKI 291 (526)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki 291 (526)
....... + +....+ |+++..+.... + .+.+.+++.+|.++++|+..++.+.+.+. + ++
T Consensus 119 ~~~~~~~--~-~~~~~~-p~~~~~~~~~~------------~---~~~~~~~~~~d~ii~~S~~~~~~l~~~g~-~--ki 176 (374)
T 2xci_A 119 EREFWPS--L-IIFTKV-PKILVNAYAKG------------S---LIEKILSKKFDLIIMRTQEDVEKFKTFGA-K--RV 176 (374)
T ss_dssp SCCCCHH--H-HHHCCS-CEEEEEECCCC------------C---HHHHHHHTTCSEEEESCHHHHHHHHTTTC-C--SE
T ss_pred CccCcHH--H-HHHHhC-CEEEEEeecCc------------h---HHHHHHHHhCCEEEECCHHHHHHHHHcCC-C--eE
Confidence 4332221 1 112223 77665443211 0 14677789999999999999999988743 3 89
Q ss_pred EEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhC----CCcEEEEEeCCccH-HHHH
Q 009759 292 RIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYR-EELE 366 (526)
Q Consensus 292 ~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l----~~~~l~ivG~g~~~-~~l~ 366 (526)
.+++|+...... +. . ..-..+++++.|+ ..||++.+++|++.+ |+++|+|+|+|+.+ ++++
T Consensus 177 ~vi~n~~f~~~~-~~--~---------~~l~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~ 242 (374)
T 2xci_A 177 FSCGNLKFICQK-GK--G---------IKLKGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIENAKIFE 242 (374)
T ss_dssp EECCCGGGCCCC-CS--C---------CCCSSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHH
T ss_pred EEcCCCccCCCc-Ch--h---------hhhcCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHH
Confidence 999997421111 10 0 0112256666664 468999999999766 68999999998876 5777
Q ss_pred HHhcCC------------CeEEecccChhhHHHHHHcCcEEEecCCC-CCCcHHHHHHHHcCCcEEEe-CCCCCCceecc
Q 009759 367 KMFTGM------------PAVFTGMLLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMSSGIPVVGV-RAGGIPDIIPE 432 (526)
Q Consensus 367 ~l~~~~------------~V~~~g~v~~~~l~~~~~~aDv~v~ps~~-e~~~~~ilEAma~G~PvI~~-~~gg~~e~v~~ 432 (526)
+++++. +|.+.|+. +|+..+|+.||++++|+.+ |++|++++||||||+|||++ +.++.+|++
T Consensus 243 ~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~-- 318 (374)
T 2xci_A 243 KKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLK-- 318 (374)
T ss_dssp HHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHH--
T ss_pred HHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHH--
Confidence 776543 35556655 7999999999998888654 67889999999999999975 778888887
Q ss_pred cCCC-ceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 009759 433 DQDG-KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 476 (526)
Q Consensus 433 ~~~~-~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~ 476 (526)
++. .+|+++..+|+++|+++|.++++| +.+++|++++++.++
T Consensus 319 -~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 319 -EFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp -HHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred -HHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 442 467788888999999999999999 999999999999885
No 29
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.92 E-value=7.1e-25 Score=194.97 Aligned_cols=148 Identities=23% Similarity=0.376 Sum_probs=131.7
Q ss_pred CCCCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhc------CCCeEEecccChhhHHHHHHcCc
Q 009759 320 EPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT------GMPAVFTGMLLGEELSQAYASGD 393 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~------~~~V~~~g~v~~~~l~~~~~~aD 393 (526)
..++++|+|+|++.+.||++.++++++.+++++|+|+|.++..+.++++++ ..+|+++|+++++++..+|+.||
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhCC
Confidence 456788999999999999999999999999999999998876666666555 23899999999999999999999
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHH-HHHHHHHH
Q 009759 394 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL-RETMGQAA 471 (526)
Q Consensus 394 v~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~-~~~~~~~a 471 (526)
++|+|+..|++|++++|||++|+|||+++.++..+++ +++.+|+++ ++|+++++++|.++++|++. ++++++++
T Consensus 100 i~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i---~~~~~g~~~-~~d~~~l~~~i~~l~~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 100 GLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETV---INEKTGYLV-NADVNEIIDAMKKVSKNPDKFKKDCFRRA 174 (177)
T ss_dssp EEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHC---CBTTTEEEE-CSCHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred EEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHh---cCCCccEEe-CCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 888899999 88999999999999998875 44443333
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.91 E-value=4.5e-24 Score=214.25 Aligned_cols=343 Identities=14% Similarity=0.084 Sum_probs=222.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccc-cccCCCc----cccccchhc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGS-RSFPCPW----YQKVPLSLA 191 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~ 191 (526)
.|||++|+..-| + ...+..++++|++. |+++.++.++..........+..++ ..+.+.. .........
T Consensus 25 m~ki~~v~Gtr~-----~-~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 98 (396)
T 3dzc_A 25 MKKVLIVFGTRP-----E-AIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVTSK 98 (396)
T ss_dssp CEEEEEEECSHH-----H-HHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHH
T ss_pred CCeEEEEEeccH-----h-HHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCceeeecCCCCCCHHHHHHH
Confidence 479999976433 2 34568899999987 7888777665432100000011111 0111111 011112234
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHH-HhhcCcEEE
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF-LHRAADLTL 270 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ii 270 (526)
....+.+++++++||+|++++.....+.+.+.++..++|++...++.. . ..+.........+. +.+.+|.++
T Consensus 99 ~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~r-s------~~~~~~~~~~~~r~~~~~~a~~~~ 171 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLR-T------GNIYSPWPEEGNRKLTAALTQYHF 171 (396)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCC-C------SCTTSSTTHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-c------cccccCCcHHHHHHHHHHhcCEEE
Confidence 556788899999999999998766666666788899999764332211 1 01100111122333 467899999
Q ss_pred eCChhHHHHHHHhcccCCCcEEEeecCC-CCCCCCCCc--c----cHHHHHhhcCCCCCCcE-EEEEecc-cccccHHHH
Q 009759 271 VPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF--R----SSEMRWRLSNGEPDKPL-IVHVGRL-GVEKSLDFL 341 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~~~ki~vi~ngi-d~~~~~~~~--~----~~~~~~~~~~~~~~~~~-i~~vG~l-~~~Kg~~~l 341 (526)
++++..++.+.+.+. +.+++.+++|++ |...+.+.. . ..+++.+++....++++ +++.+|. ...|+++.+
T Consensus 172 ~~se~~~~~l~~~G~-~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~l 250 (396)
T 3dzc_A 172 APTDTSRANLLQENY-NAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERI 250 (396)
T ss_dssp ESSHHHHHHHHHTTC-CGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHH
T ss_pred CCCHHHHHHHHHcCC-CcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHH
Confidence 999999999988764 667899999854 322211110 0 13344455421233444 4455454 345789999
Q ss_pred HHHHHhC----CCcEEEEE-eCCc-cHHHHHHHhc-CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHc
Q 009759 342 KRVMDRL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 414 (526)
Q Consensus 342 i~a~~~l----~~~~l~iv-G~g~-~~~~l~~l~~-~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~ 414 (526)
++|++.+ +++++++. |.++ ..+.++++.. ..+|.+.+++++.++..+|+.||++|.+| | +.++|||++
T Consensus 251 l~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G--g~~~EA~a~ 325 (396)
T 3dzc_A 251 CQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G--GIQEEAPSL 325 (396)
T ss_dssp HHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSEEEESC---S--GGGTTGGGG
T ss_pred HHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c--cHHHHHHHc
Confidence 9998776 68888885 5543 3555665433 34799999998889999999999999998 2 444899999
Q ss_pred CCcEEEe-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 415 GIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 415 G~PvI~~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
|+|+|++ +.++..+.+ ++| .++++.. |++++++++.++++|++.+++|++++. .|.....++++.
T Consensus 326 G~PvV~~~~~~~~~e~v---~~G-~~~lv~~-d~~~l~~ai~~ll~d~~~~~~m~~~~~----~~~~~~aa~ri~ 391 (396)
T 3dzc_A 326 GKPVLVMRETTERPEAV---AAG-TVKLVGT-NQQQICDALSLLLTDPQAYQAMSQAHN----PYGDGKACQRIA 391 (396)
T ss_dssp TCCEEECCSSCSCHHHH---HHT-SEEECTT-CHHHHHHHHHHHHHCHHHHHHHHTSCC----TTCCSCHHHHHH
T ss_pred CCCEEEccCCCcchHHH---HcC-ceEEcCC-CHHHHHHHHHHHHcCHHHHHHHhhccC----CCcCChHHHHHH
Confidence 9999998 778888888 666 4677654 899999999999999999999887654 344444555554
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.91 E-value=1.1e-23 Score=211.61 Aligned_cols=344 Identities=14% Similarity=0.099 Sum_probs=221.0
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccc-cccCCCc----cccccch
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGS-RSFPCPW----YQKVPLS 189 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~ 189 (526)
++|||++|+..-| + -..+..++++|++. |+++.++.++.............++ ..+.+.. .......
T Consensus 26 ~~~kI~~v~Gtr~-----~-~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~ 99 (403)
T 3ot5_A 26 AKIKVMSIFGTRP-----E-AIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEIT 99 (403)
T ss_dssp CCEEEEEEECSHH-----H-HHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTTCCCSEECCCCC-CCCHHHHH
T ss_pred ccceEEEEEecCh-----h-HHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcCCCCCcccccCCCCCCHHHHH
Confidence 4589999986433 2 24458899999987 6888777665331110000111111 0111111 0111122
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccc-cchHHHHHHHHhhcCcE
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL-VKPMWLVIKFLHRAADL 268 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ad~ 268 (526)
......+.+++++++||+|++++.....+.+.+.++..++|++. ++..... ..+. ........+.+.+.+|.
T Consensus 100 ~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h-~~aglrs------~~~~~~~p~~~~r~~~~~~a~~ 172 (403)
T 3ot5_A 100 SRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGH-VEAGLRT------WNKYSPFPEEMNRQLTGVMADI 172 (403)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEE-ESCCCCC------SCTTSSTTHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEE-EECCccc------cccccCCcHHHHHHHHHHhcCE
Confidence 34566788899999999999998766666666778889999763 3321100 0110 00111233445567999
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecC-CCCCCCCCCc-ccHHHHHhhcCCCCCCcEEEEEecccc-cccHHHHHHHH
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGV-EKSLDFLKRVM 345 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ng-id~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~vG~l~~-~Kg~~~li~a~ 345 (526)
+++.++..++.+.+.+. +.+++.+++|. +|...+.+.. .....+.++ .+++.++++.||... .|+++.+++++
T Consensus 173 ~~~~se~~~~~l~~~Gi-~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~ 248 (403)
T 3ot5_A 173 HFSPTKQAKENLLAEGK-DPATIFVTGNTAIDALKTTVQKDYHHPILENL---GDNRLILMTAHRRENLGEPMQGMFEAV 248 (403)
T ss_dssp EEESSHHHHHHHHHTTC-CGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHcCC-CcccEEEeCCchHHHHHhhhhhhcchHHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHH
Confidence 99999999999998764 66889999885 4433221111 112233332 233445566666533 47788888888
Q ss_pred HhC----CCcEEEEE-eCCc-cHHHHHHHhc-CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcE
Q 009759 346 DRL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 418 (526)
Q Consensus 346 ~~l----~~~~l~iv-G~g~-~~~~l~~l~~-~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~Pv 418 (526)
..+ +++++++. |.++ ..+.+++... ..+|.+.|++++.++..+|+.||++|.+| |...+||+++|+|+
T Consensus 249 ~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~Pv 323 (403)
T 3ot5_A 249 REIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPV 323 (403)
T ss_dssp HHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCE
T ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCE
Confidence 765 78888887 4443 3455555433 24799999999889999999999999887 45558999999999
Q ss_pred EEe-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 009759 419 VGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 487 (526)
Q Consensus 419 I~~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~ 487 (526)
|+. +.++.++.+ +.| +|+++.. |++++++++.++++|++.+++|++++..+....+++.+++.+
T Consensus 324 V~~~~~~~~~e~v---~~g-~~~lv~~-d~~~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa~rI~~~l 388 (403)
T 3ot5_A 324 LVLRDTTERPEGI---EAG-TLKLIGT-NKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAI 388 (403)
T ss_dssp EECCSSCSCHHHH---HHT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHH
T ss_pred EEecCCCcchhhe---eCC-cEEEcCC-CHHHHHHHHHHHHcCHHHHHHHHhhcCcccCCcHHHHHHHHH
Confidence 998 678888877 555 7888765 999999999999999999998876544332333444444333
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.91 E-value=2.2e-23 Score=211.36 Aligned_cols=341 Identities=12% Similarity=0.065 Sum_probs=213.8
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCceeccccc-------------
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAKLIGSRS------------- 177 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~~~~~~~------------- 177 (526)
+....+|||++++. ..+|....+..++++|+++||+|++++.... ... ..+.....+..
T Consensus 15 ~~~~~~MrIl~~~~-----~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 3otg_A 15 HIEGRHMRVLFASL-----GTHGHTYPLLPLATAARAAGHEVTFATGEGF-AGTLRKLGFEPVATGMPVFDGFLAALRIR 88 (412)
T ss_dssp ---CCSCEEEEECC-----SSHHHHGGGHHHHHHHHHTTCEEEEEECGGG-HHHHHHTTCEEEECCCCHHHHHHHHHHHH
T ss_pred CcccceeEEEEEcC-----CCcccHHHHHHHHHHHHHCCCEEEEEccHHH-HHHHHhcCCceeecCcccccchhhhhhhh
Confidence 34667799999973 2467777889999999999999999987531 110 01222222111
Q ss_pred cC---------CCccccccchhc------ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc
Q 009759 178 FP---------CPWYQKVPLSLA------LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY 242 (526)
Q Consensus 178 ~~---------~~~~~~~~~~~~------~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~ 242 (526)
.. ..........+. ....+.+++++++||+|+++..... +.++++..++|+|++.|+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~---~~~aa~~~giP~v~~~~~~~~~~ 165 (412)
T 3otg_A 89 FDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYG---AGLAALKAGIPTICHGVGRDTPD 165 (412)
T ss_dssp HSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHH---HHHHHHHHTCCEEEECCSCCCCS
T ss_pred hcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhH---HHHHHHHcCCCEEEecccccCch
Confidence 00 000000011111 1267788889999999999854322 44667889999999888754211
Q ss_pred ccccccccccchHHHHHHHH------------hhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH
Q 009759 243 IPRYTFSWLVKPMWLVIKFL------------HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS 310 (526)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~------------~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~ 310 (526)
. ........+.+.. ...+|.+++.++...+........ ....+.+.+.+.....+
T Consensus 166 ~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 232 (412)
T 3otg_A 166 D------LTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARP--RRHELRPVPFAEQGDLP----- 232 (412)
T ss_dssp H------HHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCT--TEEECCCCCCCCCCCCC-----
T ss_pred h------hhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCC--CcceeeccCCCCCCCCC-----
Confidence 0 0011111112111 235778888887666555432211 11111111111110000
Q ss_pred HHHHhh--cCCCCCCcEEEEEecccccccHHHHHHHHHhC--CCcEEEEEeCCcc-HHHHHHHhcCCCeEEecccChhhH
Q 009759 311 EMRWRL--SNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEEL 385 (526)
Q Consensus 311 ~~~~~~--~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l--~~~~l~ivG~g~~-~~~l~~l~~~~~V~~~g~v~~~~l 385 (526)
.+ ....++..++++.|++. .++.+.+.++++.+ .++++++++.+.. .+.++.+ ..+|.+.|++ ++
T Consensus 233 ----~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~--~~~v~~~~~~---~~ 302 (412)
T 3otg_A 233 ----AWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEV--PANVRLESWV---PQ 302 (412)
T ss_dssp ----GGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCC--CTTEEEESCC---CH
T ss_pred ----CccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccC--CCcEEEeCCC---CH
Confidence 01 11133455677888885 56655555544433 2677776664432 3333322 2379999999 48
Q ss_pred HHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCCC--CHHHHHHHHHHhhh
Q 009759 386 SQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLY 459 (526)
Q Consensus 386 ~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~ 459 (526)
.++|+.||++|.++ .+++++|||++|+|+|+.+.++ ..+.+ .+...|++++.+ |+++++++|.++++
T Consensus 303 ~~~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v---~~~g~g~~~~~~~~~~~~l~~ai~~ll~ 375 (412)
T 3otg_A 303 AALLPHVDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAV---AQAGAGDHLLPDNISPDSVSGAAKRLLA 375 (412)
T ss_dssp HHHGGGCSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHh
Confidence 89999999999664 3589999999999999987764 45666 667789999876 89999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 009759 460 NQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 460 d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~ 493 (526)
|++.++++++.+++..+.++++.+++.++ +++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 408 (412)
T 3otg_A 376 EESYRAGARAVAAEIAAMPGPDEVVRLLP-GFAS 408 (412)
T ss_dssp CHHHHHHHHHHHHHHHHSCCHHHHHTTHH-HHHC
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHhc
Confidence 99999999999999888899999999886 6654
No 33
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.91 E-value=2.5e-22 Score=199.54 Aligned_cols=325 Identities=17% Similarity=0.132 Sum_probs=209.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc---cCceeccccccCCCc---cccc---cc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF---YGAKLIGSRSFPCPW---YQKV---PL 188 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~---~~ 188 (526)
+.||+|... ..||+-.....++++|+++||+|.+++...+..... .+.....+.....+. .... ..
T Consensus 2 ~~~i~i~~G-----GTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 76 (365)
T 3s2u_A 2 KGNVLIMAG-----GTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLE 76 (365)
T ss_dssp -CEEEEECC-----SSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHH
T ss_pred CCcEEEEcC-----CCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHH
Confidence 358876642 246777778999999999999999998765432211 122221111111110 0000 11
Q ss_pred hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcE
Q 009759 189 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 268 (526)
Q Consensus 189 ~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 268 (526)
.+.......+++++++||+|+...... .....++++..++|++++..+..+. ...+.+.+.++.
T Consensus 77 ~~~~~~~~~~~l~~~~PDvVi~~g~~~-s~p~~laA~~~~iP~vihe~n~~~G---------------~~nr~l~~~a~~ 140 (365)
T 3s2u_A 77 LLKSLFQALRVIRQLRPVCVLGLGGYV-TGPGGLAARLNGVPLVIHEQNAVAG---------------TANRSLAPIARR 140 (365)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEECSSST-HHHHHHHHHHTTCCEEEEECSSSCC---------------HHHHHHGGGCSE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcc-hHHHHHHHHHcCCCEEEEecchhhh---------------hHHHhhccccce
Confidence 122334567788999999999987543 3445667889999999765554321 224567788999
Q ss_pred EEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCc-EEEEEecccccccHHHHHHHHHh
Q 009759 269 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKP-LIVHVGRLGVEKSLDFLKRVMDR 347 (526)
Q Consensus 269 ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~vG~l~~~Kg~~~li~a~~~ 347 (526)
+++..+.. +. ...++.++.|++..+.+...... ... ..+++ ++++.|++...+..+.+.+++..
T Consensus 141 v~~~~~~~-------~~-~~~k~~~~g~pvr~~~~~~~~~~------~~~-~~~~~~ilv~gGs~g~~~~~~~~~~al~~ 205 (365)
T 3s2u_A 141 VCEAFPDT-------FP-ASDKRLTTGNPVRGELFLDAHAR------APL-TGRRVNLLVLGGSLGAEPLNKLLPEALAQ 205 (365)
T ss_dssp EEESSTTS-------SC-C---CEECCCCCCGGGCCCTTSS------CCC-TTSCCEEEECCTTTTCSHHHHHHHHHHHT
T ss_pred eeeccccc-------cc-CcCcEEEECCCCchhhccchhhh------ccc-CCCCcEEEEECCcCCccccchhhHHHHHh
Confidence 88766532 11 34677788888877655433211 111 23444 45566778888888899999988
Q ss_pred CC---CcEEEE-EeCCccHHHHHHHhcC--CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 348 LP---EARIAF-IGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 348 l~---~~~l~i-vG~g~~~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
++ ++++++ +|.+. .+.+.+...+ .++.+.+++ +++.++|+.||++|.-+ .++++.|+|++|+|+|..
T Consensus 206 l~~~~~~~vi~~~G~~~-~~~~~~~~~~~~~~~~v~~f~--~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ili 278 (365)
T 3s2u_A 206 VPLEIRPAIRHQAGRQH-AEITAERYRTVAVEADVAPFI--SDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLV 278 (365)
T ss_dssp SCTTTCCEEEEECCTTT-HHHHHHHHHHTTCCCEEESCC--SCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEEC
T ss_pred cccccceEEEEecCccc-cccccceecccccccccccch--hhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEe
Confidence 84 344443 45443 3444443332 378999999 68999999999999543 378999999999999987
Q ss_pred CCCCC--------CceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 422 RAGGI--------PDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 422 ~~gg~--------~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
+.+.. .+.+ .+...|++++.. ++++|+++|.++++|++.+++|++++++..+....+.+++.++
T Consensus 279 p~p~~~~~~Q~~NA~~l---~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~ 352 (365)
T 3s2u_A 279 PLPHAIDDHQTRNAEFL---VRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACL 352 (365)
T ss_dssp C-----CCHHHHHHHHH---HTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHH---HHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 76532 1234 455678877654 5899999999999999999999999988766556666666554
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.88 E-value=8.8e-22 Score=200.73 Aligned_cols=346 Identities=15% Similarity=0.078 Sum_probs=209.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccCceecccccc-CCCcc------cccc--
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYGAKLIGSRSF-PCPWY------QKVP-- 187 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~~~~~~~~~~-~~~~~------~~~~-- 187 (526)
.|||++++. ..+|+...+..++++|+++||+|++++....... ...+.....+... +.... ....
T Consensus 7 m~kIl~~~~-----~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (430)
T 2iyf_A 7 PAHIAMFSI-----AAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDN 81 (430)
T ss_dssp -CEEEEECC-----SCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHHH
T ss_pred cceEEEEeC-----CCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCCCEEEEcCCcCccccccccccchhhHHH
Confidence 379998742 2367777889999999999999999987542110 0112222222111 00000 0000
Q ss_pred ------chhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc-ccc-c------------c
Q 009759 188 ------LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY-IPR-Y------------T 247 (526)
Q Consensus 188 ------~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-~~~-~------------~ 247 (526)
........+.+.+++++||+|+++.... .+..+++..++|++...++..... ... . .
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (430)
T 2iyf_A 82 VEPFLNDAIQALPQLADAYADDIPDLVLHDITSY---PARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTER 158 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCH---HHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCEEEECCccH---HHHHHHHHcCCCEEEEecccccccccccccccchhhhhccchH
Confidence 0112234566777888999999875432 345667888999998886643110 000 0 0
Q ss_pred cccccchHHHHHHH---------HhhcCcEEEeCChhHHHHHHHhcccCCCc-EEEeecCCCCCCCCCCcccHHHHHhhc
Q 009759 248 FSWLVKPMWLVIKF---------LHRAADLTLVPSVAIGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRSSEMRWRLS 317 (526)
Q Consensus 248 ~~~~~~~~~~~~~~---------~~~~ad~ii~~S~~~~~~l~~~~~~~~~k-i~vi~ngid~~~~~~~~~~~~~~~~~~ 317 (526)
..+.......+... ++..+|.+++.+....+...... + .+ +..+.++++.....+. +.
T Consensus 159 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~-~~~v~~vG~~~~~~~~~~~---------~~ 226 (430)
T 2iyf_A 159 GRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRV--D-EDVYTFVGACQGDRAEEGG---------WQ 226 (430)
T ss_dssp HHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGS--C-TTTEEECCCCC-----CCC---------CC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccC--C-CccEEEeCCcCCCCCCCCC---------Cc
Confidence 00000001111111 22247888888765543321111 2 34 7777665543210000 00
Q ss_pred C-CCCCCcEEEEEeccccccc---HHHHHHHHHhCCCcEE-EEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcC
Q 009759 318 N-GEPDKPLIVHVGRLGVEKS---LDFLKRVMDRLPEARI-AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASG 392 (526)
Q Consensus 318 ~-~~~~~~~i~~vG~l~~~Kg---~~~li~a~~~l~~~~l-~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~a 392 (526)
. ..++..+++++|++. .++ +..++++++.++++++ +++|.+...+.++.+ ..+|.+.|++++. ++|+.|
T Consensus 227 ~~~~~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~--~~~v~~~~~~~~~---~~l~~a 300 (430)
T 2iyf_A 227 RPAGAEKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGEL--PDNVEVHDWVPQL---AILRQA 300 (430)
T ss_dssp CCTTCSEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSC--CTTEEEESSCCHH---HHHTTC
T ss_pred cccCCCCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccC--CCCeEEEecCCHH---HHhhcc
Confidence 0 123456788899987 433 5556666666567787 567877654443221 2379999999743 789999
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHH
Q 009759 393 DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRET 466 (526)
Q Consensus 393 Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~ 466 (526)
|++|..+ ..++++|||++|+|+|+.+.++ ..+.+ .+.+.|+.++.+ |+++++++|.++++|++.+++
T Consensus 301 d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 373 (430)
T 2iyf_A 301 DLFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADML---QGLGVARKLATEEATADLLRETALALVDDPEVARR 373 (430)
T ss_dssp SEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHH
T ss_pred CEEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHH---HHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHH
Confidence 9999754 2479999999999999998764 34455 556789988866 899999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 009759 467 MGQAARQEMEKYDWRAATRTIRNEQYNAAIW 497 (526)
Q Consensus 467 ~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l~ 497 (526)
+++.+++..+.++++.+++.++ +++++...
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~ 403 (430)
T 2iyf_A 374 LRRIQAEMAQEGGTRRAADLIE-AELPARHE 403 (430)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-TTSCC---
T ss_pred HHHHHHHHHhcCcHHHHHHHHH-HHhhcccc
Confidence 9999988887889999998886 67665543
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.86 E-value=2.7e-21 Score=195.06 Aligned_cols=336 Identities=14% Similarity=0.098 Sum_probs=190.3
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccCceecccccc--------------
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYGAKLIGSRSF-------------- 178 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~~~~~~~~~~-------------- 178 (526)
.....|||++++.. ..|....+..++++|+++||+|++++....... ...+.....+...
T Consensus 11 ~~~~~MrIl~~~~~-----~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
T 4fzr_A 11 PRGSHMRILVIAGC-----SEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGN 85 (398)
T ss_dssp ----CCEEEEECCS-----SHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSC
T ss_pred CCCCceEEEEEcCC-----CcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCc
Confidence 45667999999752 357777789999999999999999987431100 0011111111100
Q ss_pred CCCcc-cc---c--------cchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccccc
Q 009759 179 PCPWY-QK---V--------PLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY 246 (526)
Q Consensus 179 ~~~~~-~~---~--------~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~ 246 (526)
..... .. . .........+.+++++++||+|+++... +.+.++++..++|++...|+..... ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~---~~~~~~a~~~giP~v~~~~~~~~~~--~~ 160 (398)
T 4fzr_A 86 RTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYS---LTGPLVAATLGIPWIEQSIRLASPE--LI 160 (398)
T ss_dssp BCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC---THHHHHHHHHTCCEEEECCSSCCCH--HH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccc---cHHHHHHHhhCCCEEEeccCCCCch--hh
Confidence 00000 00 0 0001223367778888999999987532 2345567889999998888753211 00
Q ss_pred ccccccchHHHHHHHHhh-------cCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCC
Q 009759 247 TFSWLVKPMWLVIKFLHR-------AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNG 319 (526)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-------~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~ 319 (526)
.......+...+.+ ..+..+...+.......... ...+..++... ........ +...
T Consensus 161 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~---~~~~ 224 (398)
T 4fzr_A 161 ----KSAGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQPKPG---TTKMRYVPYNG------RNDQVPSW---VFEE 224 (398)
T ss_dssp ----HHHHHHHTHHHHHTTTCSSCCCCSEEEECSCGGGC----CC---CEECCCCCCCC------SSCCCCHH---HHSC
T ss_pred ----hHHHHHHHHHHHHHcCCCCCCCCCeEEEeCChhhCCCCCCC---CCCeeeeCCCC------CCCCCchh---hhcC
Confidence 00000111111111 12344443332221111110 00111111100 00000111 1111
Q ss_pred CCCCcEEEEEecccc----------cccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHH
Q 009759 320 EPDKPLIVHVGRLGV----------EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY 389 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~----------~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~ 389 (526)
...+.+++++|++.. .+.++.+++++..+ +++++++|.+...+.+..+ ..+|++.|+++ +.++|
T Consensus 225 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~---~~~ll 298 (398)
T 4fzr_A 225 RKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSDKLAQTLQPL--PEGVLAAGQFP---LSAIM 298 (398)
T ss_dssp CSSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC--------C--CTTEEEESCCC---HHHHG
T ss_pred CCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhccC--CCcEEEeCcCC---HHHHH
Confidence 234566778899854 45588888888877 7899988877655544433 34899999984 77889
Q ss_pred HcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC----CCCceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHH
Q 009759 390 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQEL 463 (526)
Q Consensus 390 ~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g----g~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~ 463 (526)
..||++|. .+.+++++|||++|+|+|+...+ +..+.+ ++.+.|++++.+ ++++++++|.++++|++.
T Consensus 299 ~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~ 371 (398)
T 4fzr_A 299 PACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLL---HAAGAGVEVPWEQAGVESVLAACARIRDDSSY 371 (398)
T ss_dssp GGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHH---HHTTSEEECC-------CHHHHHHHHHHCTHH
T ss_pred hhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHhCHHH
Confidence 99999994 45578999999999999996554 455566 667889998876 789999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 464 RETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 464 ~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
++++++.+++..+..+++.+++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 372 VGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 9999999988888899999988764
No 36
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.84 E-value=8.6e-20 Score=184.18 Aligned_cols=343 Identities=14% Similarity=0.078 Sum_probs=204.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccCceecccccc-CC------Ccccc-----
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYGAKLIGSRSF-PC------PWYQK----- 185 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~~~~~~~~~~-~~------~~~~~----- 185 (526)
|||++++. + ..|+-..+..++++|+++||+|++++....... ...+.....+... +. .....
T Consensus 5 ~~il~~~~----~-~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (402)
T 3ia7_A 5 RHILFANV----Q-GHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQL 79 (402)
T ss_dssp CEEEEECC----S-SHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHH
T ss_pred CEEEEEeC----C-CCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcCCEEEecccccccccccccccccchHHHH
Confidence 39998864 2 357888899999999999999999986321000 0111222111100 00 00000
Q ss_pred ----ccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccccc---------c-cc-c
Q 009759 186 ----VPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY---------T-FS-W 250 (526)
Q Consensus 186 ----~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~---------~-~~-~ 250 (526)
..........+.+.+++++||+|++++. ....+..+++..++|++...|+......... . .. .
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~--~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
T 3ia7_A 80 HLVYVRENVAILRAAEEALGDNPPDLVVYDVF--PFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPAD 157 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEEEST--THHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEECch--HHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChhh
Confidence 0001122346677788899999999742 2233556678899999998876543211000 0 00 0
Q ss_pred ccchHHHHHHH------------HhhcC-cEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhc
Q 009759 251 LVKPMWLVIKF------------LHRAA-DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS 317 (526)
Q Consensus 251 ~~~~~~~~~~~------------~~~~a-d~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~ 317 (526)
.......+.+. +.... |..++......+...... ..++..+.+.+......+....
T Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~~~~-------- 226 (402)
T 3ia7_A 158 VEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETF---DERFAFVGPTLTGRDGQPGWQP-------- 226 (402)
T ss_dssp SHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGC---CTTEEECCCCCCC----CCCCC--------
T ss_pred HHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccC---CCCeEEeCCCCCCcccCCCCcc--------
Confidence 00001111111 11111 555555544433322221 2345555433321110000000
Q ss_pred CCCCCCcEEEEEecccccc--cHHHHHHHHHhCCCcEEEE-EeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcE
Q 009759 318 NGEPDKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDV 394 (526)
Q Consensus 318 ~~~~~~~~i~~vG~l~~~K--g~~~li~a~~~l~~~~l~i-vG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv 394 (526)
.......++++.|+....+ .+..+++++..++ +++++ +|.+...+.++.+ ..+|++.|++++. ++|+.||+
T Consensus 227 ~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~--~~~v~~~~~~~~~---~ll~~ad~ 300 (402)
T 3ia7_A 227 PRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTP-WHVVMAIGGFLDPAVLGPL--PPNVEAHQWIPFH---SVLAHARA 300 (402)
T ss_dssp SSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSS-CEEEEECCTTSCGGGGCSC--CTTEEEESCCCHH---HHHTTEEE
T ss_pred cCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCC-cEEEEEeCCcCChhhhCCC--CCcEEEecCCCHH---HHHhhCCE
Confidence 0133456678889886665 5677778877775 66555 6665444333321 2389999999643 89999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCcEEEeCC-C----CCCceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHH
Q 009759 395 FVMPSESETLGLVVLEAMSSGIPVVGVRA-G----GIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETM 467 (526)
Q Consensus 395 ~v~ps~~e~~~~~ilEAma~G~PvI~~~~-g----g~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~ 467 (526)
+|..+ ..++++|||++|+|+|+... . +..+.+ .+.+.|..+..+ ++++++++|.++++|++.++++
T Consensus 301 ~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~ 373 (402)
T 3ia7_A 301 CLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERV---IELGLGSVLRPDQLEPASIREAVERLAADSAVRERV 373 (402)
T ss_dssp EEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHH---HHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHH
T ss_pred EEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHH---HHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 99654 35789999999999997655 3 444555 566788888765 8999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 009759 468 GQAARQEMEKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 468 ~~~a~~~~~~fs~~~~~~~~~~~ly~ 493 (526)
++.+++..+..+++.+++.+. +++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~i~-~~~~ 398 (402)
T 3ia7_A 374 RRMQRDILSSGGPARAADEVE-AYLG 398 (402)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhhCChHHHHHHHHH-HHHh
Confidence 888888777889998888886 5554
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.83 E-value=5.5e-20 Score=185.44 Aligned_cols=333 Identities=15% Similarity=0.097 Sum_probs=198.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc--ccCceecccccc--------------
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE--FYGAKLIGSRSF-------------- 178 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~~~~~~~~~-------------- 178 (526)
..+.|||+|++.. .+|....+..++++|+++||+|++++. . .... ..+.....+...
T Consensus 17 ~~~~MrIl~~~~~-----~~Ghv~~~~~La~~L~~~GheV~v~~~-~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
T 3oti_A 17 EGRHMRVLFVSSP-----GIGHLFPLIQLAWGFRTAGHDVLIAVA-E-HADRAAAAGLEVVDVAPDYSAVKVFEQVAKDN 89 (398)
T ss_dssp --CCCEEEEECCS-----SHHHHGGGHHHHHHHHHTTCEEEEEES-S-CHHHHHTTTCEEEESSTTCCHHHHHHHHHHHC
T ss_pred hhhcCEEEEEcCC-----CcchHhHHHHHHHHHHHCCCEEEEecc-c-hHHHHHhCCCeeEecCCccCHHHHhhhcccCC
Confidence 4556999999752 357777889999999999999999997 2 1111 122222211100
Q ss_pred ----------CCCcccc-----ccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccc
Q 009759 179 ----------PCPWYQK-----VPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI 243 (526)
Q Consensus 179 ----------~~~~~~~-----~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~ 243 (526)
+...... ..........+.+++++++||+|++.... +.+.++++..++|++...++......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~---~~~~~aA~~~giP~v~~~~~~~~~~~ 166 (398)
T 3oti_A 90 PRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGA---TVGLLAADRAGVPAVQRNQSAWRTRG 166 (398)
T ss_dssp HHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTC---HHHHHHHHHHTCCEEEECCTTCCCTT
T ss_pred ccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchh---hHHHHHHHHcCCCEEEEeccCCCccc
Confidence 0000000 00112334578888899999999985332 33456778899999987766422110
Q ss_pred cccccccccchHHHHHHHHh--hcCcEEEeCChhHHHHHHHhcccCCCcEEEee-cCCCCCCCCCCcccHHHHHhhcCCC
Q 009759 244 PRYTFSWLVKPMWLVIKFLH--RAADLTLVPSVAIGKDLEAARVTAANKIRIWK-KGVDSESFHPRFRSSEMRWRLSNGE 320 (526)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~--~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~-ngid~~~~~~~~~~~~~~~~~~~~~ 320 (526)
..............+..+ ...+..+...+......... ....+..++ ++-.. . +. .+....
T Consensus 167 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~-~~--------~~~~~~ 230 (398)
T 3oti_A 167 --MHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEP---EGWFMRWVPYGGGAV--L-GD--------RLPPVP 230 (398)
T ss_dssp --HHHHHHTTCHHHHHHTTCCCCCCSEEECSSCGGGGTTSCC---CSBCCCCCCCCCCEE--C-CS--------SCCCCC
T ss_pred --hhhHHHHHHHHHHHHcCCCCCCCCeEEEeCCHHHCCCCCC---CCCCccccCCCCCcC--C-ch--------hhhcCC
Confidence 000000000111111111 12244554443322111000 011111222 11100 0 00 000012
Q ss_pred CCCcEEEEEecccc----cccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEE
Q 009759 321 PDKPLIVHVGRLGV----EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 396 (526)
Q Consensus 321 ~~~~~i~~vG~l~~----~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v 396 (526)
+.+.+++++|++.. .+.+..+++++... +++++++|++...+.++.+ ..||.+.|++ ++.++|..||++|
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~g~~~~~~l~~~--~~~v~~~~~~---~~~~ll~~ad~~v 304 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV-DADFVLALGDLDISPLGTL--PRNVRAVGWT---PLHTLLRTCTAVV 304 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS-SSEEEEECTTSCCGGGCSC--CTTEEEESSC---CHHHHHTTCSEEE
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC-CCEEEEEECCcChhhhccC--CCcEEEEccC---CHHHHHhhCCEEE
Confidence 34566778899843 34567777777776 7899998876544333322 2389999999 4667899999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCcEEEe----CCCCCC--ceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHH
Q 009759 397 MPSESETLGLVVLEAMSSGIPVVGV----RAGGIP--DIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMG 468 (526)
Q Consensus 397 ~ps~~e~~~~~ilEAma~G~PvI~~----~~gg~~--e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~ 468 (526)
. .+.+++++|||++|+|+|+. +..+.. +.+ ++...|+.++.. +++.++ ++++|++.+++++
T Consensus 305 ~----~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~---~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~ 373 (398)
T 3oti_A 305 H----HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAV---SRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAR 373 (398)
T ss_dssp E----CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHH---HHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHH
T ss_pred E----CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHH---HHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHH
Confidence 4 45568999999999999994 445666 777 667889988765 556555 7889999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 009759 469 QAARQEMEKYDWRAATRTIRNEQ 491 (526)
Q Consensus 469 ~~a~~~~~~fs~~~~~~~~~~~l 491 (526)
+.+++..+..+++.+++.++ ++
T Consensus 374 ~~~~~~~~~~~~~~~~~~l~-~l 395 (398)
T 3oti_A 374 EVREEMVALPTPAETVRRIV-ER 395 (398)
T ss_dssp HHHHHHHTSCCHHHHHHHHH-HH
T ss_pred HHHHHHHhCCCHHHHHHHHH-HH
Confidence 99988888899999998885 44
No 38
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.83 E-value=1.9e-20 Score=188.37 Aligned_cols=335 Identities=12% Similarity=0.060 Sum_probs=199.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC-ccccCceeccc-ccc---CCCcc---------
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP-QEFYGAKLIGS-RSF---PCPWY--------- 183 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~-~~~~~~~~~~~-~~~---~~~~~--------- 183 (526)
+|||++++.. ..|+...+..++++|+++||+|++++...... ....+.....+ ... .....
T Consensus 1 ~MrIl~~~~~-----~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (391)
T 3tsa_A 1 HMRVLVVPLP-----YPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPA 75 (391)
T ss_dssp CCEEEEECCS-----CHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGG
T ss_pred CcEEEEEcCC-----CcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhcccccccc
Confidence 4999999752 36777778999999999999999998532100 00011222111 000 00000
Q ss_pred ------cc-----ccchhcc-------cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccc
Q 009759 184 ------QK-----VPLSLAL-------SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPR 245 (526)
Q Consensus 184 ------~~-----~~~~~~~-------~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~ 245 (526)
.. ....... ...+.+++++++||+|+++... +.+.++++..++|++...|+.......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~---~~~~~aa~~~giP~v~~~~~~~~~~~~- 151 (391)
T 3tsa_A 76 FGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCA---LIGRVLGGLLDLPVVLHRWGVDPTAGP- 151 (391)
T ss_dssp GGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC---HHHHHHHHHTTCCEEEECCSCCCTTTH-
T ss_pred cccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcch---hHHHHHHHHhCCCEEEEecCCcccccc-
Confidence 00 0000111 4566788889999999997532 334557788999999887775321110
Q ss_pred cccccccchH-HHHHHHHhh---cCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCC
Q 009759 246 YTFSWLVKPM-WLVIKFLHR---AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP 321 (526)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~---~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~ 321 (526)
......... ....+..+. ..+.++.......+....... ..+..++ . ....... ........
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p--~-----~~~~~~~---~~~~~~~~ 217 (391)
T 3tsa_A 152 -FSDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQASDAPQG---APVQYVP--Y-----NGSGAFP---AWGAARTS 217 (391)
T ss_dssp -HHHHHHHHHHHHHHHTTSSSSCCCSEEEECSCGGGSCTTSCCC---EECCCCC--C-----CCCEECC---GGGSSCCS
T ss_pred -ccchHHHHHHHHHHHcCCCCCCCCceEEEecChhhcCCCCCcc---CCeeeec--C-----CCCcCCC---chhhcCCC
Confidence 000000000 011111111 115555554433221111000 0111111 0 0000000 00111123
Q ss_pred CCcEEEEEecccccc-c----HHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEE
Q 009759 322 DKPLIVHVGRLGVEK-S----LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 396 (526)
Q Consensus 322 ~~~~i~~vG~l~~~K-g----~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v 396 (526)
++.++++.|+....+ + ++.++++ +.+|+++++++|.+...+.+..+ ..+|++.|+++..+ ++..||++|
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~~~~---ll~~ad~~v 291 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHRALLTDL--PDNARIAESVPLNL---FLRTCELVI 291 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGGGGCTTC--CTTEEECCSCCGGG---TGGGCSEEE
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcchhhcccC--CCCEEEeccCCHHH---HHhhCCEEE
Confidence 345567778885532 2 5666777 77789999999877544433321 23899999996544 569999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCcEEEeCCC----CCCceecccCCCceeEeeCC----CCHHHHHHHHHHhhhCHHHHHHHH
Q 009759 397 MPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP----GDLDDCLSKLEPLLYNQELRETMG 468 (526)
Q Consensus 397 ~ps~~e~~~~~ilEAma~G~PvI~~~~g----g~~e~v~~~~~~~~g~~~~~----~d~~~la~ai~~ll~d~~~~~~~~ 468 (526)
. ++.+++++|||++|+|+|+.... +..+.+ .+...|.+++. .|+++++++|.++++|++.+++++
T Consensus 292 ~----~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~ 364 (391)
T 3tsa_A 292 C----AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL---AAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAI 364 (391)
T ss_dssp E----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHH---HHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHH
T ss_pred e----CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHH---HHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 4 45567999999999999997553 334455 56778999887 789999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 009759 469 QAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 469 ~~a~~~~~~fs~~~~~~~~~ 488 (526)
+.+++..+..+++.+++.++
T Consensus 365 ~~~~~~~~~~~~~~~~~~i~ 384 (391)
T 3tsa_A 365 KLSDEITAMPHPAALVRTLE 384 (391)
T ss_dssp HHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 98888888899999988775
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.83 E-value=2.2e-19 Score=182.06 Aligned_cols=346 Identities=12% Similarity=0.029 Sum_probs=202.8
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccCceeccccccCCCccc---------
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYGAKLIGSRSFPCPWYQ--------- 184 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------- 184 (526)
..+.|||++++. ...|+-..+..++++|+++||+|++++....... ...+.....+... .+...
T Consensus 17 ~~~m~rIl~~~~-----~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~ 90 (415)
T 3rsc_A 17 GRHMAHLLIVNV-----ASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSE-IIDADAAEVFGSDD 90 (415)
T ss_dssp --CCCEEEEECC-----SCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCS-TTTCCHHHHHHSSS
T ss_pred cccCCEEEEEeC-----CCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcCCEEEecccc-ccccccchhhcccc
Confidence 344589998864 2367778899999999999999999995431110 0112222211110 00000
Q ss_pred --------cccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccccc---------c
Q 009759 185 --------KVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY---------T 247 (526)
Q Consensus 185 --------~~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~---------~ 247 (526)
...........+.+.+++++||+|++++. ..+.+..+++..++|++...++......... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~--~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 168 (415)
T 3rsc_A 91 LGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDF--PFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLAGT 168 (415)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEEST--THHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECch--hhhHHHHHHHHhCCCEEEEEecccccCcccccccccccccc
Confidence 00011122346677788899999998632 2233456678899999998876542110000 0
Q ss_pred -cc-cccchHHHHHHHH------------hh-cCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHH
Q 009759 248 -FS-WLVKPMWLVIKFL------------HR-AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEM 312 (526)
Q Consensus 248 -~~-~~~~~~~~~~~~~------------~~-~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~ 312 (526)
.. ........+.... .. ..|..++......+...... ..++..+.+.+......+..
T Consensus 169 ~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~~----- 240 (415)
T 3rsc_A 169 IDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTF---DDRFVFVGPCFDDRRFLGEW----- 240 (415)
T ss_dssp CCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGC---CTTEEECCCCCCCCGGGCCC-----
T ss_pred CChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccC---CCceEEeCCCCCCcccCcCc-----
Confidence 00 0000001111111 11 11555555544333222211 23444443222111000000
Q ss_pred HHhhcCCCCCCcEEEEEecccccc--cHHHHHHHHHhCCCcEEEE-EeCCccHHHHHHHhcCCCeEEecccChhhHHHHH
Q 009759 313 RWRLSNGEPDKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY 389 (526)
Q Consensus 313 ~~~~~~~~~~~~~i~~vG~l~~~K--g~~~li~a~~~l~~~~l~i-vG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~ 389 (526)
.......+.++++.|+..... .+..+++++..++ +++++ +|.+...+.++.+ ..||++.|++++. ++|
T Consensus 241 ---~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~~~l~~~--~~~v~~~~~~~~~---~ll 311 (415)
T 3rsc_A 241 ---TRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVDPAALGDL--PPNVEAHRWVPHV---KVL 311 (415)
T ss_dssp ---CCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSCGGGGCCC--CTTEEEESCCCHH---HHH
T ss_pred ---cccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCChHHhcCC--CCcEEEEecCCHH---HHH
Confidence 000123455677888875443 3677778887775 77776 6665444333321 2389999999643 889
Q ss_pred HcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC----CCCceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHH
Q 009759 390 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQEL 463 (526)
Q Consensus 390 ~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g----g~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~ 463 (526)
..||++|..+ ..++++|||++|+|+|+.... ...+.+ .+.+.|..+..+ ++++++++|.++++|++.
T Consensus 312 ~~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 384 (415)
T 3rsc_A 312 EQATVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRV---DQLGLGAVLPGEKADGDTLLAAVGAVAADPAL 384 (415)
T ss_dssp HHEEEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHH---HHHTCEEECCGGGCCHHHHHHHHHHHHTCHHH
T ss_pred hhCCEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHH---HHcCCEEEcccCCCCHHHHHHHHHHHHcCHHH
Confidence 9999999653 357899999999999996543 234455 455678877755 899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 009759 464 RETMGQAARQEMEKYDWRAATRTIRNEQYN 493 (526)
Q Consensus 464 ~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~ 493 (526)
++++.+.+++..+...++.+++.+. +++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~ 413 (415)
T 3rsc_A 385 LARVEAMRGHVRRAGGAARAADAVE-AYLA 413 (415)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-HHhh
Confidence 9999888888777888888888775 5543
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.79 E-value=5.6e-18 Score=169.85 Aligned_cols=329 Identities=15% Similarity=0.108 Sum_probs=197.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccCceeccccccC-----------CC-cc-c
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYGAKLIGSRSFP-----------CP-WY-Q 184 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~~~~~~~~~~~-----------~~-~~-~ 184 (526)
|||++++. ..+|+...+..++++|+++||+|++++....... ...+.....+.... .+ .. .
T Consensus 1 MrIl~~~~-----~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (384)
T 2p6p_A 1 MRILFVAA-----GSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPS 75 (384)
T ss_dssp CEEEEECC-----SSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCC
T ss_pred CEEEEEeC-----CccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhCCCEEEEeCCcchHHHHhhhcccCccccCc
Confidence 89999853 2368888899999999999999999986531100 00122211111100 00 00 0
Q ss_pred --ccc----ch------hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccccccccccccc
Q 009759 185 --KVP----LS------LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLV 252 (526)
Q Consensus 185 --~~~----~~------~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~ 252 (526)
... .. ......+.+.+++++||+|+++.... .+..+++..++|++...|+.... .. .....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~---~~~~~a~~~giP~v~~~~~~~~~--~~-~~~~~- 148 (384)
T 2p6p_A 76 DPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSY---VAPLLALHLGVPHARQTWDAVDA--DG-IHPGA- 148 (384)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCT---HHHHHHHHHTCCEEEECCSSCCC--TT-THHHH-
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchh---hHHHHHHhcCCCEEEeccCCccc--ch-hhHHH-
Confidence 000 00 01234566777888999999976422 34456778899999877653211 00 00000
Q ss_pred chHHHHHHHHhhc-------CcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcE
Q 009759 253 KPMWLVIKFLHRA-------ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPL 325 (526)
Q Consensus 253 ~~~~~~~~~~~~~-------ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (526)
.....+...+. ++.+++.+....+.... .+..++..++ .+ ......... ....+...+
T Consensus 149 --~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~--~~-----~~~~~~~~l---~~~~~~~~v 213 (384)
T 2p6p_A 149 --DAELRPELSELGLERLPAPDLFIDICPPSLRPANA---APARMMRHVA--TS-----RQCPLEPWM---YTRDTRQRV 213 (384)
T ss_dssp --HHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTTS---CCCEECCCCC--CC-----CCCBCCHHH---HCCCSSCEE
T ss_pred --HHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCCC---CCCCceEecC--CC-----CCCCCCchh---hcCCCCCEE
Confidence 00111111111 56777766543221100 0111111111 11 000111111 001233557
Q ss_pred EEEEeccccc-------ccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEec
Q 009759 326 IVHVGRLGVE-------KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 398 (526)
Q Consensus 326 i~~vG~l~~~-------Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~p 398 (526)
++++|++... +.++.+++++..+ ++++++++.+...+.++.+ ..+|.+ |+++. .++|..||++|..
T Consensus 214 ~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~g~~~~~~l~~~--~~~v~~-~~~~~---~~~l~~~d~~v~~ 286 (384)
T 2p6p_A 214 LVTSGSRVAKESYDRNFDFLRGLAKDLVRW-DVELIVAAPDTVAEALRAE--VPQARV-GWTPL---DVVAPTCDLLVHH 286 (384)
T ss_dssp EEECSSSSSCCSSCCCCTTHHHHHHHHHTT-TCEEEEECCHHHHHHHHHH--CTTSEE-ECCCH---HHHGGGCSEEEEC
T ss_pred EEECCCCCccccccccHHHHHHHHHHHhcC-CcEEEEEeCCCCHHhhCCC--CCceEE-cCCCH---HHHHhhCCEEEeC
Confidence 8889998765 6788999999886 7888887654433444432 348999 99953 5678999999965
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 009759 399 SESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAAR 472 (526)
Q Consensus 399 s~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~~~a~ 472 (526)
+.+++++|||++|+|+|+.+.++ ..+.+ .+.+.|+.++.. ++++++++|.+++.|++.++++++.++
T Consensus 287 ----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 359 (384)
T 2p6p_A 287 ----AGGVSTLTGLSAGVPQLLIPKGSVLEAPARRV---ADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSR 359 (384)
T ss_dssp ----SCTTHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHhCCCEEEccCcccchHHHHHH---HHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 34578999999999999998753 44555 455678888754 799999999999999999999988887
Q ss_pred HHHHhCCHHHHHHHHH
Q 009759 473 QEMEKYDWRAATRTIR 488 (526)
Q Consensus 473 ~~~~~fs~~~~~~~~~ 488 (526)
+....-..+.+++.+.
T Consensus 360 ~~~~~~~~~~~~~~i~ 375 (384)
T 2p6p_A 360 EISGMPLPATVVTALE 375 (384)
T ss_dssp HHHTSCCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHH
Confidence 7766667777776664
No 41
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.76 E-value=2e-18 Score=171.82 Aligned_cols=343 Identities=14% Similarity=0.111 Sum_probs=213.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCc--eeccc--cccCCCcc--ccccchhc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGA--KLIGS--RSFPCPWY--QKVPLSLA 191 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~--~~~~~--~~~~~~~~--~~~~~~~~ 191 (526)
..|+++|+..-| --.-+..++++|.+. +++.++.++.........+ +..++ ..+.+... ........
T Consensus 9 ~~~~~~v~GtRp------e~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 81 (385)
T 4hwg_A 9 MLKVMTIVGTRP------ELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGL 81 (385)
T ss_dssp CCEEEEEECSHH------HHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHH
T ss_pred hhheeEEEEcCH------hHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHH
Confidence 368988875433 124577888889887 8888887664321111110 11111 11111111 11111123
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEe
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 271 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 271 (526)
....+.+++++++||+|++++.....+. .+.++..++|++....+. ..+ . ... .-....+.+-+.+|.+++
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IPv~h~eagl-rs~----~-~~~--pee~nR~~~~~~a~~~~~ 152 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPIFHMEAGN-RCF----D-QRV--PEEINRKIIDHISDVNIT 152 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCCEEEESCCC-CCS----C-TTS--THHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCCEEEEeCCC-ccc----c-ccC--cHHHHHHHHHhhhceeec
Confidence 4567888999999999999986555555 667788999975433222 110 0 000 111223344567999999
Q ss_pred CChhHHHHHHHhcccCCCcEEEeecCC-CCCCCC-CCcccHHHHHhhcCCCCCCcEEEEEecc---cccccHHHHHHHHH
Q 009759 272 PSVAIGKDLEAARVTAANKIRIWKKGV-DSESFH-PRFRSSEMRWRLSNGEPDKPLIVHVGRL---GVEKSLDFLKRVMD 346 (526)
Q Consensus 272 ~S~~~~~~l~~~~~~~~~ki~vi~ngi-d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~vG~l---~~~Kg~~~li~a~~ 346 (526)
.++..++.+.+.+. +.+++.++.|.+ |...+. +.......+.++++. +++.++++.||. +..++++.+++++.
T Consensus 153 ~te~~~~~l~~~G~-~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~-~~~~iLvt~hr~e~~~~~~~l~~ll~al~ 230 (385)
T 4hwg_A 153 LTEHARRYLIAEGL-PAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLT-PKQYFLISSHREENVDVKNNLKELLNSLQ 230 (385)
T ss_dssp SSHHHHHHHHHTTC-CGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCC-TTSEEEEEECCC-----CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCC-CcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCC-cCCEEEEEeCCchhcCcHHHHHHHHHHHH
Confidence 99999999988875 667899998854 322111 011223445556553 345555666664 34478999999988
Q ss_pred hCC---CcEEEEEeCCccHHHHHHH---hc-CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEE
Q 009759 347 RLP---EARIAFIGDGPYREELEKM---FT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 419 (526)
Q Consensus 347 ~l~---~~~l~ivG~g~~~~~l~~l---~~-~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI 419 (526)
.+. ++++++.......+.+++. .. ..+|.+.+.+++.++..+|+.||++|..| |+.+.||+++|+|+|
T Consensus 231 ~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv 305 (385)
T 4hwg_A 231 MLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEASILNLPAL 305 (385)
T ss_dssp HHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEE
T ss_pred HHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEE
Confidence 763 6777775543334444443 22 23799999988889999999999999766 456899999999999
Q ss_pred EeCCC-CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHH-HHhCCHHHHHHHHH
Q 009759 420 GVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE-MEKYDWRAATRTIR 488 (526)
Q Consensus 420 ~~~~g-g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~-~~~fs~~~~~~~~~ 488 (526)
+.... +.+|.+ +.| +++++.. |.+++++++.++++|+..+++|++++..+ ....+.+.+++.+.
T Consensus 306 ~~~~~ter~e~v---~~G-~~~lv~~-d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~ 371 (385)
T 4hwg_A 306 NIREAHERPEGM---DAG-TLIMSGF-KAERVLQAVKTITEEHDNNKRTQGLVPDYNEAGLVSKKILRIVL 371 (385)
T ss_dssp ECSSSCSCTHHH---HHT-CCEECCS-SHHHHHHHHHHHHTTCBTTBCCSCCCHHHHTCCCHHHHHHHHHH
T ss_pred EcCCCccchhhh---hcC-ceEEcCC-CHHHHHHHHHHHHhChHHHHHhhccCCCCCCCChHHHHHHHHHH
Confidence 97654 356666 444 5666643 89999999999999988777665554444 33445555555443
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.70 E-value=2.4e-16 Score=160.92 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=116.8
Q ss_pred CCcEEEEEecccc-----cccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEE
Q 009759 322 DKPLIVHVGRLGV-----EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 396 (526)
Q Consensus 322 ~~~~i~~vG~l~~-----~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v 396 (526)
...+++++|++.. .+.+..++++++.+ ++++++.+.+...+.++. ...||.+.|++++ .++|..||++|
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~~l~~--~~~~v~~~~~~~~---~~ll~~ad~~V 340 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV-DAEIIATFDAQQLEGVAN--IPDNVRTVGFVPM---HALLPTCAATV 340 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS-SSEEEECCCTTTTSSCSS--CCSSEEECCSCCH---HHHGGGCSEEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC-CCEEEEEECCcchhhhcc--CCCCEEEecCCCH---HHHHhhCCEEE
Confidence 3456788899865 37888999999887 788888765543322221 1237999999975 45689999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHHHH
Q 009759 397 MPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQA 470 (526)
Q Consensus 397 ~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~~~ 470 (526)
.. +.+++++|||++|+|+|+.+..+ ..+.+ .+...|+.++.. ++++++++|.++++|++.++++++.
T Consensus 341 ~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 413 (441)
T 2yjn_A 341 HH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRT---QEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARM 413 (441)
T ss_dssp EC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHH---HHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 63 44689999999999999998743 34455 556678888765 8999999999999999999999888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHH
Q 009759 471 ARQEMEKYDWRAATRTIRNEQY 492 (526)
Q Consensus 471 a~~~~~~fs~~~~~~~~~~~ly 492 (526)
+++..+....+.+++.++ ++.
T Consensus 414 ~~~~~~~~~~~~~~~~i~-~~~ 434 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICE-ELA 434 (441)
T ss_dssp HHHHHTSCCHHHHHHHHH-HHH
T ss_pred HHHHHcCCCHHHHHHHHH-HHH
Confidence 887777788888887775 443
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.67 E-value=4.2e-15 Score=150.91 Aligned_cols=338 Identities=15% Similarity=0.093 Sum_probs=188.3
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccCceeccccc-cCCCc------cccccc-
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYGAKLIGSRS-FPCPW------YQKVPL- 188 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~~~~~~~~~-~~~~~------~~~~~~- 188 (526)
.|||+++.. + ..|+-..+..++++|+++||+|++++....... ...+.....+.. ++... ......
T Consensus 12 ~~~Il~~~~----~-~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
T 2iya_A 12 PRHISFFNI----P-GHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDSILPKESNPEESWPEDQESA 86 (424)
T ss_dssp CCEEEEECC----S-CHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCEEEECCCCSCCTTCTTCCCCSSHHHH
T ss_pred cceEEEEeC----C-CCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhCCCEEEecCccccccccchhhcchhHHHH
Confidence 479998743 2 368888899999999999999999987542110 001222211111 00000 000000
Q ss_pred -------hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc-ccc-c---cccc------
Q 009759 189 -------SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY-IPR-Y---TFSW------ 250 (526)
Q Consensus 189 -------~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-~~~-~---~~~~------ 250 (526)
.......+.+++++.+||+|++..... .+..+++..|+|.+...++..... ... . ....
T Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~---~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (424)
T 2iya_A 87 MGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASW---PAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEE 163 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCT---HHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEEcCccc---HHHHHHHhcCCCEEEEecccccccccccccccccccccccccc
Confidence 001223455666678999999876422 245567788999998776542110 000 0 0000
Q ss_pred ------------------ccchH-HHHHHH------------HhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCC
Q 009759 251 ------------------LVKPM-WLVIKF------------LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD 299 (526)
Q Consensus 251 ------------------~~~~~-~~~~~~------------~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid 299 (526)
....+ ..+... +...++.+++.+....+...... ..++..+...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~~~vGp~~~ 240 (424)
T 2iya_A 164 AAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTV---GDNYTFVGPTYG 240 (424)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGC---CTTEEECCCCCC
T ss_pred cccccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccCC---CCCEEEeCCCCC
Confidence 00000 001111 11134445544433221110110 124444443321
Q ss_pred CCCCCCCcccHHHHHhhcC-CCCCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEE-EEeCCccHHHHHHHhcCCCeE
Q 009759 300 SESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAV 375 (526)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~-ivG~g~~~~~l~~l~~~~~V~ 375 (526)
... .. ..+.. ...+..++++.|+... .+.+..++++++. .+++++ ++|.+...+.+..+ ..||.
T Consensus 241 ~~~-----~~----~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~~~~~~~--~~~v~ 308 (424)
T 2iya_A 241 DRS-----HQ----GTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDPADLGEV--PPNVE 308 (424)
T ss_dssp CCG-----GG----CCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCGGGGCSC--CTTEE
T ss_pred Ccc-----cC----CCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCChHHhccC--CCCeE
Confidence 110 00 00000 1234556778888762 2345566666665 367774 46765433332211 23799
Q ss_pred EecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCCC--CHHH
Q 009759 376 FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDD 449 (526)
Q Consensus 376 ~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~~--d~~~ 449 (526)
+.+++++. ++|..||++|.. +..++++||+++|+|+|+....+ ..+.+ .+.+.|+.++.+ +.++
T Consensus 309 ~~~~~~~~---~~l~~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~ 378 (424)
T 2iya_A 309 VHQWVPQL---DILTKASAFITH----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERI---VELGLGRHIPRDQVTAEK 378 (424)
T ss_dssp EESSCCHH---HHHTTCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHTTSEEECCGGGCCHHH
T ss_pred EecCCCHH---HHHhhCCEEEEC----CchhHHHHHHHcCCCEEEecCccchHHHHHHH---HHCCCEEEcCcCCCCHHH
Confidence 99999754 689999999853 33589999999999999997753 23344 445678777644 8999
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 009759 450 CLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 488 (526)
Q Consensus 450 la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~ 488 (526)
++++|.++++|++.++++++.+++..+....+.+++.++
T Consensus 379 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 417 (424)
T 2iya_A 379 LREAVLAVASDPGVAERLAAVRQEIREAGGARAAADILE 417 (424)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999988888777766655566666666664
No 44
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.62 E-value=2.9e-14 Score=143.66 Aligned_cols=344 Identities=10% Similarity=-0.021 Sum_probs=180.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-cccCceeccccccCCCc-----cccccchhcc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFYGAKLIGSRSFPCPW-----YQKVPLSLAL 192 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 192 (526)
|||+|++.. ..|.-..+..++++|+++||+|++++....... ...+.....+....... ..........
T Consensus 1 MrIli~~~g-----t~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 75 (404)
T 3h4t_A 1 MGVLITGCG-----SRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVV 75 (404)
T ss_dssp -CEEEEEES-----SHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGH
T ss_pred CeEEEEeCC-----CCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcCCceeecCCCHHHHhccccCCHHHHHHHH
Confidence 899999753 247778899999999999999999986431100 00111111111000000 0000000001
Q ss_pred cHHHHHHHHh-----cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccc--cchHHHHHHHHhh-
Q 009759 193 SPRIISEVAR-----FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL--VKPMWLVIKFLHR- 264 (526)
Q Consensus 193 ~~~l~~~l~~-----~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~--~~~~~~~~~~~~~- 264 (526)
...+...++. .+||+|+++........+..++...++|++...|..+..........+. ....+......+.
T Consensus 76 ~~~~~~~~~~l~~~~~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (404)
T 3h4t_A 76 TEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNS 155 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHHHHHHHHHHHHHhHHHHHH
Confidence 1111111111 3899999887655444456778899999998888754221111100000 0000000000000
Q ss_pred -cCcEEEeCChhHHHHHHH----------hcccC--CCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEec
Q 009759 265 -AADLTLVPSVAIGKDLEA----------ARVTA--ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR 331 (526)
Q Consensus 265 -~ad~ii~~S~~~~~~l~~----------~~~~~--~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~ 331 (526)
.++.-+.......+.... ....+ ..++..+.+.+... .......+...+. ...+.++++.|+
T Consensus 156 ~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~~G~~~~~~---~~~~~~~l~~~l~--~~~~~Vlv~~Gs 230 (404)
T 3h4t_A 156 HRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPD---QRPLSAELEGFLR--AGSPPVYVGFGS 230 (404)
T ss_dssp HHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCC---CCCCCHHHHHHHH--TSSCCEEECCTT
T ss_pred HHHHcCCCCCcchhhccccCCeEEeeCcceeCCCCCCCCeEEeCccccCC---CCCCCHHHHHHHh--cCCCeEEEECCC
Confidence 011111111111111000 00000 01121111111111 1111233333332 334567788898
Q ss_pred cc-ccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHH
Q 009759 332 LG-VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 410 (526)
Q Consensus 332 l~-~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilE 410 (526)
+. ..+.++.+++++..+ ++++++.+.....+. .....||.+.++++. ..++..||++|.. |..+++.|
T Consensus 231 ~~~~~~~~~~~~~al~~~-~~~vv~~~g~~~~~~---~~~~~~v~~~~~~~~---~~ll~~~d~~v~~----gG~~t~~E 299 (404)
T 3h4t_A 231 GPAPAEAARVAIEAVRAQ-GRRVVLSSGWAGLGR---IDEGDDCLVVGEVNH---QVLFGRVAAVVHH----GGAGTTTA 299 (404)
T ss_dssp SCCCTTHHHHHHHHHHHT-TCCEEEECTTTTCCC---SSCCTTEEEESSCCH---HHHGGGSSEEEEC----CCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhC-CCEEEEEeCCccccc---ccCCCCEEEecCCCH---HHHHhhCcEEEEC----CcHHHHHH
Confidence 87 677789999999887 577777643321111 111348999999964 5678899999943 34579999
Q ss_pred HHHcCCcEEEeCCCCCC----ceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHH
Q 009759 411 AMSSGIPVVGVRAGGIP----DIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAAT 484 (526)
Q Consensus 411 Ama~G~PvI~~~~gg~~----e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~ 484 (526)
|+++|+|+|+...++-. +.+ ++.+.|..+... +.++++++|.++++ ++.++++.+.+..... ...+.++
T Consensus 300 al~~GvP~v~~p~~~dQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~-~~~~~~~ 374 (404)
T 3h4t_A 300 VTRAGAPQVVVPQKADQPYYAGRV---ADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTIRT-DGTTVAA 374 (404)
T ss_dssp HHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHcCCCEEEcCCcccHHHHHHHH---HHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHhh-hHHHHHH
Confidence 99999999998765432 223 344567776543 79999999999998 8777666555543333 4455555
Q ss_pred HHHH
Q 009759 485 RTIR 488 (526)
Q Consensus 485 ~~~~ 488 (526)
+.++
T Consensus 375 ~~i~ 378 (404)
T 3h4t_A 375 KLLL 378 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.61 E-value=2.6e-15 Score=151.15 Aligned_cols=341 Identities=13% Similarity=0.049 Sum_probs=174.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceecccc------ccCCC-------
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSR------SFPCP------- 181 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~------~~~~~------- 181 (526)
-.+.|||||++. + ..|+-..+..|+++|+++||+|++++..........+.....+. ....+
T Consensus 19 ~~~~MRIL~~~~----p-~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (400)
T 4amg_A 19 YFQSMRALFITS----P-GLSHILPTVPLAQALRALGHEVRYATGGDIRAVAEAGLCAVDVSPGVNYAKLFVPDDTDVTD 93 (400)
T ss_dssp --CCCEEEEECC----S-SHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHTTTCEEEESSTTCCSHHHHSCCC-----
T ss_pred CCCCCeEEEECC----C-chhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHhcCCeeEecCCchhHhhhcccccccccc
Confidence 345699998853 2 35777889999999999999999998643110000011100000 00000
Q ss_pred ---cccccc---------chhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccc
Q 009759 182 ---WYQKVP---------LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFS 249 (526)
Q Consensus 182 ---~~~~~~---------~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~ 249 (526)
...... ........+.+.+++++||+|+...... .+..++...++|.+...+....... ....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~---~~~~~A~~~gip~~~~~~~~~~~~~--~~~~ 168 (400)
T 4amg_A 94 PMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQG---AGPLTAAALQLPCVELPLGPADSEP--GLGA 168 (400)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCT---HHHHHHHHTTCCEEECCSSTTTCCH--HHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchH---HHHHHHHHcCCCceeeccccccccc--chhh
Confidence 000000 0011123456677888999999876433 2445678899999875544322110 0000
Q ss_pred cccchH-HHHHHHHh---hcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcE
Q 009759 250 WLVKPM-WLVIKFLH---RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPL 325 (526)
Q Consensus 250 ~~~~~~-~~~~~~~~---~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (526)
...+.. ....+... ...+..+.......................-+.........+. .+........+
T Consensus 169 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~v 240 (400)
T 4amg_A 169 LIRRAMSKDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYNGGAVLPD--------WLPPAAGRRRI 240 (400)
T ss_dssp HHHHHTHHHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCCCCEECCT--------TCSCCTTCCEE
T ss_pred HHHHHHHHHHHHhCCCcccccchhhcccCchhhccCcccccCCcccCcccccccccccCcc--------cccccCCCcEE
Confidence 000000 01111111 1122333333332222211111011111110000100000000 01111334456
Q ss_pred EEEEeccccccc----HHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCC
Q 009759 326 IVHVGRLGVEKS----LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 401 (526)
Q Consensus 326 i~~vG~l~~~Kg----~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~ 401 (526)
++..|++...++ +..+++++... +.++++.+.+...+....+ ..|+.+.+++|. .++|..+|++|.
T Consensus 241 ~vs~Gs~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~--~~~v~~~~~~p~---~~lL~~~~~~v~---- 310 (400)
T 4amg_A 241 AVTLGSIDALSGGIAKLAPLFSEVADV-DAEFVLTLGGGDLALLGEL--PANVRVVEWIPL---GALLETCDAIIH---- 310 (400)
T ss_dssp EECCCSCC--CCSSSTTHHHHHHGGGS-SSEEEEECCTTCCCCCCCC--CTTEEEECCCCH---HHHHTTCSEEEE----
T ss_pred EEeCCcccccCccHHHHHHHHHHhhcc-CceEEEEecCccccccccC--CCCEEEEeecCH---HHHhhhhhheec----
Confidence 677788754432 45555666555 5666665543322111111 237999999964 456899999983
Q ss_pred CCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHh
Q 009759 402 ETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 477 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~ 477 (526)
.+..++++|||++|+|+|+....+- .+.+ ++.+.|+.++. .+..+++|.++++|++.+++.++-+++....
T Consensus 311 h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v---~~~G~g~~l~~--~~~~~~al~~lL~d~~~r~~a~~l~~~~~~~ 385 (400)
T 4amg_A 311 HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVL---TGLGIGFDAEA--GSLGAEQCRRLLDDAGLREAALRVRQEMSEM 385 (400)
T ss_dssp CCCHHHHHHHHHHTCCEEECCC---CHHHHHHH---HHHTSEEECCT--TTCSHHHHHHHHHCHHHHHHHHHHHHHHHTS
T ss_pred cCCccHHHHHHHhCCCEEEecCcccHHHHHHHH---HHCCCEEEcCC--CCchHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 4556799999999999999876542 2334 34456777663 4456789999999999888776666655555
Q ss_pred CCHHHHHHHHH
Q 009759 478 YDWRAATRTIR 488 (526)
Q Consensus 478 fs~~~~~~~~~ 488 (526)
-+...+++.++
T Consensus 386 ~~~~~~a~~le 396 (400)
T 4amg_A 386 PPPAETAAXLV 396 (400)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777776664
No 46
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.56 E-value=2.1e-13 Score=137.97 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=98.4
Q ss_pred CCcEEEEEecc-cccccHHHHHHHHHhCCCcEEEEE-eCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecC
Q 009759 322 DKPLIVHVGRL-GVEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 399 (526)
Q Consensus 322 ~~~~i~~vG~l-~~~Kg~~~li~a~~~l~~~~l~iv-G~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps 399 (526)
+..++++.|++ ...+..+.++++++.++ .+++++ |.+... ... ...+|.+.+++++. ++|.+||++|..
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~--~~~--~~~~v~~~~~~~~~---~~l~~~d~~v~~- 308 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-RRVILSRGWADLV--LPD--DGADCFAIGEVNHQ---VLFGRVAAVIHH- 308 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-CCEEECTTCTTCC--CSS--CGGGEEECSSCCHH---HHGGGSSEEEEC-
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-CeEEEEeCCCccc--ccC--CCCCEEEeCcCChH---HHHhhCCEEEeC-
Confidence 45678888998 58888999999999884 566554 754321 111 11279999999764 457999999963
Q ss_pred CCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCC--CCHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 009759 400 ESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQ 473 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~--~d~~~la~ai~~ll~d~~~~~~~~~~a~~ 473 (526)
+..++++|||++|+|+|+....+ ..+.+ ++.+.|+.++. .+.++++++|.++ .|++.++++.+.+++
T Consensus 309 ---~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~~ 381 (415)
T 1iir_A 309 ---GGAGTTHVAARAGAPQILLPQMADQPYYAGRV---AELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAGT 381 (415)
T ss_dssp ---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHHH
T ss_pred ---CChhHHHHHHHcCCCEEECCCCCccHHHHHHH---HHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 33579999999999999997754 23444 45567877764 3899999999999 998877776655544
Q ss_pred H
Q 009759 474 E 474 (526)
Q Consensus 474 ~ 474 (526)
.
T Consensus 382 ~ 382 (415)
T 1iir_A 382 I 382 (415)
T ss_dssp S
T ss_pred H
Confidence 3
No 47
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.49 E-value=8.4e-13 Score=133.53 Aligned_cols=137 Identities=10% Similarity=0.073 Sum_probs=98.2
Q ss_pred CCcEEEEEeccc---ccccHHHHHHHHHhCCCcEEEEE-eCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEe
Q 009759 322 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 397 (526)
Q Consensus 322 ~~~~i~~vG~l~---~~Kg~~~li~a~~~l~~~~l~iv-G~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ 397 (526)
+..++++.|+.. ..+.++.++++++.+ +.+++++ |.+... ... ...++.+.++++. .++|..||++|.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~--~~~--~~~~v~~~~~~~~---~~ll~~~d~~v~ 308 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-GRRVILSRGWTELV--LPD--DRDDCFAIDEVNF---QALFRRVAAVIH 308 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-TCCEEEECTTTTCC--CSC--CCTTEEEESSCCH---HHHGGGSSEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-CCeEEEEeCCcccc--ccC--CCCCEEEeccCCh---HHHhccCCEEEe
Confidence 356777889884 567788889999887 5677665 754321 111 1237999999974 457899999995
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCC--CCHHHHHHHHHHhhhCHHHHHHHHHHH
Q 009759 398 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAA 471 (526)
Q Consensus 398 ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~--~d~~~la~ai~~ll~d~~~~~~~~~~a 471 (526)
.+..++++||+++|+|+|+....+ ..+.+ ++.+.|+.++. .+.++++++|.++ .|++.++++++.+
T Consensus 309 ----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~ 380 (416)
T 1rrv_A 309 ----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRV---AALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAVA 380 (416)
T ss_dssp ----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHH---HHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHHT
T ss_pred ----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHH---HHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHHH
Confidence 344679999999999999987643 22334 44567777753 4799999999999 9988777766554
Q ss_pred HHH
Q 009759 472 RQE 474 (526)
Q Consensus 472 ~~~ 474 (526)
++.
T Consensus 381 ~~~ 383 (416)
T 1rrv_A 381 GMV 383 (416)
T ss_dssp TTC
T ss_pred HHH
Confidence 433
No 48
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.49 E-value=1.3e-12 Score=133.73 Aligned_cols=274 Identities=14% Similarity=0.108 Sum_probs=174.1
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
...+.+.+++.++||++--+.+... ....++...-.|+-++.-++.... + +...|++++-
T Consensus 338 ~~~ia~~Ir~d~IDILVdL~g~t~~-~~i~~aa~RpAPVQvs~lGyp~TT-G------------------l~~iDY~i~D 397 (631)
T 3q3e_A 338 LEFIRSVCESNGAAIFYMPSIGMDM-TTIFASNTRLAPIQAIALGHPATT-H------------------SDFIEYVIVE 397 (631)
T ss_dssp HHHHHHHHHHHTCSEEEESCCSSSH-HHHHHTTSCCSSEEEEECSSCSCC-C------------------CTTCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCc-hhHHHHhCCCchheEeccCCCccc-C------------------cccCCEEEeC
Confidence 4577888999999999885544432 234444566789988877743221 1 2346777653
Q ss_pred ChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCC-CCCcEEEEEecccccccHHHHHHHH----Hh
Q 009759 273 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVM----DR 347 (526)
Q Consensus 273 S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~vG~l~~~Kg~~~li~a~----~~ 347 (526)
....- -... ..+++..+|+..-. +.|..... .+..+++.. .+.++++++++. .|..+.+++++ ++
T Consensus 398 ~~~~~--~~~~---ysEklirLP~~~~~--~~p~~~~p-~r~~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~ 467 (631)
T 3q3e_A 398 DDYVG--SEEC---FSETLLRLPKDALP--YVPSALAP-EKVDYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDR 467 (631)
T ss_dssp GGGCC--CGGG---CSSEEEEECTTSSC--CCCCTTCC-SSCCCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHH
T ss_pred CCCCC--cccC---ceeeEEECCCCccc--cCCcccCC-ccccccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHh
Confidence 32111 0122 34788888864311 11111100 011122211 124566666664 67666666555 45
Q ss_pred CCCcEEE--EEeC--CccHHHHHHHhc---CCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEE
Q 009759 348 LPEARIA--FIGD--GPYREELEKMFT---GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 420 (526)
Q Consensus 348 l~~~~l~--ivG~--g~~~~~l~~l~~---~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~ 420 (526)
.|+..+. ++|. |.....+++..+ ..++.|.|.++.++....|+.+|+++.|+.+.| |++.+|||++|+|||+
T Consensus 468 vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVT 546 (631)
T 3q3e_A 468 AKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVC 546 (631)
T ss_dssp CSSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEe
Confidence 5776553 3563 333333332221 237899999999999999999999999997755 9999999999999999
Q ss_pred eCCCCCCceeccc---CCCceeE-eeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-H--hCCHHHHHHHHHHHHHH
Q 009759 421 VRAGGIPDIIPED---QDGKIGY-LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-E--KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 421 ~~~gg~~e~v~~~---~~~~~g~-~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~-~--~fs~~~~~~~~~~~ly~ 493 (526)
...+.+...+... .-|-.++ +.. |.+++++...++..|++.+++++++.++.. . -|+ ...+++. +.|+
T Consensus 547 l~G~~~asRvgaSlL~~~GLpE~LIA~--d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e-~~ye 621 (631)
T 3q3e_A 547 KTGAEVHEHIDEGLFKRLGLPEWLIAN--TVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMG-QVFL 621 (631)
T ss_dssp ECCSSHHHHHHHHHHHHTTCCGGGEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHH-HHHH
T ss_pred ccCCcHHHHhHHHHHHhcCCCcceecC--CHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHH-HHHH
Confidence 7655444333000 1233343 444 899999999999999999999999988886 3 355 6678885 8999
Q ss_pred HHHHHHHHh
Q 009759 494 AAIWFWRKK 502 (526)
Q Consensus 494 ~~l~~~~~~ 502 (526)
++..+|+.+
T Consensus 622 ~~~~~w~~~ 630 (631)
T 3q3e_A 622 EKLNAFLKE 630 (631)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999888754
No 49
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.38 E-value=2.9e-12 Score=133.80 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=188.0
Q ss_pred CCCEEEECCCchHHHHHHHHHH--------------hcCCCEEEEEecCCcccccccccccccc----------------
Q 009759 204 KPDIIHASSPGIMVFGALIIAK--------------LLCVPIVMSYHTHVPVYIPRYTFSWLVK---------------- 253 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~--------------~~~~p~v~~~h~~~~~~~~~~~~~~~~~---------------- 253 (526)
+||+||+|+++......-++.. ..+..+++|.|+..+.....+....+.+
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 6899999998665433311111 1478899999998775432211110000
Q ss_pred -----------------------hHHHHHHHHhhcCcEEEeCChhHHHHHHHh-----cccCCCcEEEeecCCCCCCC--
Q 009759 254 -----------------------PMWLVIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF-- 303 (526)
Q Consensus 254 -----------------------~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~-----~~~~~~ki~vi~ngid~~~~-- 303 (526)
....+....+..++.|-++|+...+.+++. ...-..++.-+.|||+...|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~ 458 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIK 458 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTT
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhc
Confidence 001245567788999999999999988742 11234689999999988766
Q ss_pred --CCC--------------------------ccc---------------HH----HHHhhcCC-CCCCcEEEEEeccccc
Q 009759 304 --HPR--------------------------FRS---------------SE----MRWRLSNG-EPDKPLIVHVGRLGVE 335 (526)
Q Consensus 304 --~~~--------------------------~~~---------------~~----~~~~~~~~-~~~~~~i~~vG~l~~~ 335 (526)
+|. ... .. ++++++.. .++.+.++++.|+..+
T Consensus 459 ~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eY 538 (796)
T 1l5w_A 459 QCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEY 538 (796)
T ss_dssp TTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGG
T ss_pred ccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhh
Confidence 332 111 01 12233433 4577889999999999
Q ss_pred ccHHH-HHHHHHhC-----------CCcEEEEEeCCc--cHHH------HHHHhc------CC----CeEEecccChhhH
Q 009759 336 KSLDF-LKRVMDRL-----------PEARIAFIGDGP--YREE------LEKMFT------GM----PAVFTGMLLGEEL 385 (526)
Q Consensus 336 Kg~~~-li~a~~~l-----------~~~~l~ivG~g~--~~~~------l~~l~~------~~----~V~~~g~v~~~~l 385 (526)
|+.++ ++..+.++ .+++|++.|.+. +... +..+++ .. +|.|+...+.+-.
T Consensus 539 KRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA 618 (796)
T 1l5w_A 539 KRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAA 618 (796)
T ss_dssp GTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHH
T ss_pred cccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHH
Confidence 99999 77665443 258999999763 2222 333332 11 4777777776777
Q ss_pred HHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHH-------
Q 009759 386 SQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP------- 456 (526)
Q Consensus 386 ~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~------- 456 (526)
..++.+||+.++||+ .|++|+.-+-+|.+|.+.|++-.|..-|+..+ ...++||++.. +++++.+.-..
T Consensus 619 ~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~-~~~ev~~l~~~~y~a~~~ 696 (796)
T 1l5w_A 619 EKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEK-VGEENIFIFGH-TVEQVKAILAKGYDPVKW 696 (796)
T ss_dssp HHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHH-HCGGGSEECSC-CHHHHHHHHHHCCCHHHH
T ss_pred HHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhc-cCCCcEEEecC-CHHHHHHHHHcccCHHHH
Confidence 899999999999999 89999999999999999999888887777621 13479999986 77777643222
Q ss_pred hhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 009759 457 LLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 496 (526)
Q Consensus 457 ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~l 496 (526)
.-.+++ ++++-+++.. ..|||+.. ..+. .+|++++
T Consensus 697 y~~~~~-~~~vvd~~~~--g~fs~~~~-~~y~-~Ly~~L~ 731 (796)
T 1l5w_A 697 RKKDKV-LDAVLKELES--GKYSDGDK-HAFD-QMLHSIG 731 (796)
T ss_dssp HHHCHH-HHHHHHHHHH--TTTTTTCT-TTTH-HHHHHTS
T ss_pred hhcCHH-HHHHHHHHHc--CCCCCCcH-HHHH-HHHHHHh
Confidence 222442 3333332221 47999775 5664 7887774
No 50
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.38 E-value=1.1e-12 Score=137.00 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=160.5
Q ss_pred HHHHHHhhcCcEEEeCChhHHHHHHHh-----cccCCCcEEEeecCCCCCCC----CCC---------------------
Q 009759 257 LVIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF----HPR--------------------- 306 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S~~~~~~l~~~-----~~~~~~ki~vi~ngid~~~~----~~~--------------------- 306 (526)
.+....+..++.|-++|+...+.+++. ...-..++.-+.|||+...| +|.
T Consensus 394 nMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l 473 (796)
T 2c4m_A 394 HMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDEL 473 (796)
T ss_dssp EHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGG
T ss_pred cHHHHHHHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHH
Confidence 345567788999999999999988742 11234689999999999988 332
Q ss_pred ------ccc---------------HH----HHHhhcCC-CCCCcEEEEEecccccccHHH-HHHHHHhC-----------
Q 009759 307 ------FRS---------------SE----MRWRLSNG-EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL----------- 348 (526)
Q Consensus 307 ------~~~---------------~~----~~~~~~~~-~~~~~~i~~vG~l~~~Kg~~~-li~a~~~l----------- 348 (526)
... .. ++++.+.. .++.+.++++.|+..+|+.++ ++..+.++
T Consensus 474 ~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~ 553 (796)
T 2c4m_A 474 KKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDI 553 (796)
T ss_dssp GGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCC
Confidence 111 01 12223332 457788999999999999999 77665443
Q ss_pred CCcEEEEEeCCc--cHHH------HHHHhc------CC----CeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHH
Q 009759 349 PEARIAFIGDGP--YREE------LEKMFT------GM----PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVV 408 (526)
Q Consensus 349 ~~~~l~ivG~g~--~~~~------l~~l~~------~~----~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~i 408 (526)
.+++|++.|.+. +... +..+++ .. +|.|+...+.+-...++.+||+.++||+ .|++|+.-
T Consensus 554 ~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~ 633 (796)
T 2c4m_A 554 PARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSN 633 (796)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHH
T ss_pred CCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHH
Confidence 258999999763 2222 333332 11 4888877776778899999999999999 89999999
Q ss_pred HHHHHcCCcEEEeCCCCCCceecccCCCceeEeeCC--CCHHHHHHH---HHHhhhCHHHHHHHHHHHHHHH--HhCCHH
Q 009759 409 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP--GDLDDCLSK---LEPLLYNQELRETMGQAARQEM--EKYDWR 481 (526)
Q Consensus 409 lEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~--~d~~~la~a---i~~ll~d~~~~~~~~~~a~~~~--~~fs~~ 481 (526)
+-+|.+|.+.|++-.|...|+..+ ...++||++.. .++.++... ....-.+++ +++ ....+ ..|||+
T Consensus 634 MKam~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~----vvd~~~~g~fs~~ 707 (796)
T 2c4m_A 634 MKFMMNGALTLGTMDGANVEIVDS-VGEENAYIFGARVEELPALRESYKPYELYETVPG-LKR----ALDALDNGTLNDN 707 (796)
T ss_dssp HHHHHTTCEEEEESSTHHHHHHHH-HCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHH----HHHTTTSSSSCCT
T ss_pred HHHHHcCCeEEeccCCeEeehhhh-cCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHH----HHHHHHcCCCCCC
Confidence 999999999999988877776521 13479999976 667666654 111112331 222 22333 379997
Q ss_pred HHHHHHHHHHHHHHHH
Q 009759 482 AATRTIRNEQYNAAIW 497 (526)
Q Consensus 482 ~~~~~~~~~ly~~~l~ 497 (526)
.. ..+. .+|++++.
T Consensus 708 ~~-~~y~-~Ly~~L~~ 721 (796)
T 2c4m_A 708 NS-GLFY-DLKHSLIH 721 (796)
T ss_dssp TC-CHHH-HHHHHHHS
T ss_pred CH-HHHH-HHHHHHHh
Confidence 76 5675 88888863
No 51
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.32 E-value=5.1e-12 Score=110.77 Aligned_cols=134 Identities=14% Similarity=0.232 Sum_probs=101.3
Q ss_pred CCCcEEEEEeccc---ccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEe
Q 009759 321 PDKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 397 (526)
Q Consensus 321 ~~~~~i~~vG~l~---~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ 397 (526)
+...+++++|++. ..|.+..+++++..++ .++++++.+...+. ...+|++.|+++++++..+ ..||++|.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~~~~-----~~~~v~~~~~~~~~~~l~~-~~ad~~I~ 92 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNKPDT-----LGLNTRLYKWIPQNDLLGH-PKTRAFIT 92 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSCCTT-----CCTTEEEESSCCHHHHHTS-TTEEEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcCccc-----CCCcEEEecCCCHHHHhcC-CCcCEEEE
Confidence 3456788899985 6788999999998874 78877775543211 1238999999987554332 99999996
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEeCCCC----CCceecccCCCceeEeeCCC--CHHHHHHHHHHhhhCHHHHHHHH
Q 009759 398 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMG 468 (526)
Q Consensus 398 ps~~e~~~~~ilEAma~G~PvI~~~~gg----~~e~v~~~~~~~~g~~~~~~--d~~~la~ai~~ll~d~~~~~~~~ 468 (526)
. +.+++++|||++|+|+|+.+..+ ..+.+ .+...|++++.. ++++++++|.+++.|++.++++.
T Consensus 93 ~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 162 (170)
T 2o6l_A 93 H----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHM---KARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVM 162 (170)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred c----CCccHHHHHHHcCCCEEeccchhhHHHHHHHH---HHcCCeEEeccccCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 3 44699999999999999998753 24455 567789888765 89999999999999987554443
No 52
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.30 E-value=4.4e-11 Score=125.45 Aligned_cols=192 Identities=14% Similarity=0.146 Sum_probs=137.0
Q ss_pred HHHHHHhhcCcEEEeCChhHHHHHHHh-c----ccCCCcEEEeecCCCCCCC----CCCcc-------------------
Q 009759 257 LVIKFLHRAADLTLVPSVAIGKDLEAA-R----VTAANKIRIWKKGVDSESF----HPRFR------------------- 308 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~~S~~~~~~l~~~-~----~~~~~ki~vi~ngid~~~~----~~~~~------------------- 308 (526)
.+....+..++.+-++|+-..+.+++. + .....++.-+.|||+...| +|...
T Consensus 429 nMa~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~ 508 (824)
T 2gj4_A 429 NMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 508 (824)
T ss_dssp EHHHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGG
T ss_pred cHHHHHHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHH
Confidence 345567888999999999998888642 1 1234689999999999988 33210
Q ss_pred -------cHHH-------------------HHhhcCC-CCCCcEEEEEecccccccHHHH-HHHHHhC------C-----
Q 009759 309 -------SSEM-------------------RWRLSNG-EPDKPLIVHVGRLGVEKSLDFL-KRVMDRL------P----- 349 (526)
Q Consensus 309 -------~~~~-------------------~~~~~~~-~~~~~~i~~vG~l~~~Kg~~~l-i~a~~~l------~----- 349 (526)
...+ ....+.. .++.+.++++.|+..+|+.+++ +..+.++ |
T Consensus 509 ~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~ 588 (824)
T 2gj4_A 509 KLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVV 588 (824)
T ss_dssp GGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCC
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCC
Confidence 0111 1112332 4577899999999999999997 6555443 2
Q ss_pred CcEEEEEeCCc--cHHH------HHHHhc--------CC--CeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHH
Q 009759 350 EARIAFIGDGP--YREE------LEKMFT--------GM--PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVL 409 (526)
Q Consensus 350 ~~~l~ivG~g~--~~~~------l~~l~~--------~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~il 409 (526)
+++|++.|.+. +... +..+++ .. +|.|+...+.+-...++.+||+.++||+ .|++|+.-+
T Consensus 589 p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~M 668 (824)
T 2gj4_A 589 PRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNM 668 (824)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHH
T ss_pred CEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHH
Confidence 46999999764 2222 333332 11 4888877776777899999999999999 899999999
Q ss_pred HHHHcCCcEEEeCCCCCCceecccCCCceeEeeCCCCHHHH
Q 009759 410 EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 450 (526)
Q Consensus 410 EAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~l 450 (526)
-+|.+|.+.|++-.|...|+..+ ...++||++... ++++
T Consensus 669 KamlNGaLtigtlDGanvEi~e~-vG~~Ngf~FG~~-~~ev 707 (824)
T 2gj4_A 669 KFMLNGALTIGTMDGANVEMAEE-AGEENFFIFGMR-VEDV 707 (824)
T ss_dssp HHHHTTCEEEECSCTTHHHHHHH-HCGGGSEECSCC-HHHH
T ss_pred HHHHcCceEEEEecCccchhhhc-cCCCCEEEeCCc-HHHH
Confidence 99999999999988876666511 145689999864 6665
No 53
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.15 E-value=9.5e-10 Score=103.52 Aligned_cols=248 Identities=12% Similarity=0.043 Sum_probs=146.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+|.++..+ ....|+-.++..||++|+ +|.+++...... . ...++......+. .-...+.+
T Consensus 1 mki~ir~Da~~-~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~--~--~~~~g~~v~~l~~--------~d~~~~~~ 63 (282)
T 3hbm_A 1 MKVLFRSDSSS-QIGFGHIKRDLVLAKQYS----DVSFACLPLEGS--L--IDEIPYPVYELSS--------ESIYELIN 63 (282)
T ss_dssp CCEEEEECCBT-TTBSHHHHHHHHHHTTCS----SEEEEECCCTTC--C--GGGCCSCEEECSS--------SCHHHHHH
T ss_pred CEEEEEEecCC-CccccHHHHHHHHHHHHH----hCEEEEecCcHh--H--HHHCCCeEEEcCc--------cCHHHHHH
Confidence 89999999866 666788899999999998 799887643211 0 0111111111110 12346777
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChhHHH
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 278 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 278 (526)
.+++.++|++++.++....-....++...+.++++ +-|.. + ...||.++-.+.....
T Consensus 64 ~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~-iDD~~-----~-----------------~~~~Dllin~~~~~~~ 120 (282)
T 3hbm_A 64 LIKEEKFELLIIDHYGISVDDEKLIKLETGVKILS-FDDEI-----K-----------------PHHCDILLNVNAYAKA 120 (282)
T ss_dssp HHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEE-ECSSC-----C-----------------CCCCSEEEECSTTCCG
T ss_pred HHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEE-EecCC-----C-----------------cccCCEEEeCCcccch
Confidence 88888999999987654433222223334666653 44421 0 0248999887654321
Q ss_pred -HHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhh-cCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEEEEE
Q 009759 279 -DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRL-SNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFI 356 (526)
Q Consensus 279 -~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~iv 356 (526)
.+... .+....... |.+.....+ ++.... ......+.+++++|..+...-...+++++..... -.++.
T Consensus 121 ~~Y~~~--~p~~~~~l~--G~~Y~~lR~-----eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~~~~-i~vv~ 190 (282)
T 3hbm_A 121 SDYEGL--VPFKCEVRC--GFSYALIRE-----EFYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELPKTKI-ISIAT 190 (282)
T ss_dssp GGGTTT--CC-CCEEEE--SGGGCCCCH-----HHHHHTTCCCCCCEEEEEECCSCCTTCHHHHHHHHSCTTSC-EEEEE
T ss_pred hhcccc--CCCCCeEee--CCcccccCH-----HHHHhhhhccccCCeEEEEECCCchhhHHHHHHHHhhcCCC-EEEEE
Confidence 11111 122212222 443332221 111111 1111233456788887766556667777665443 33556
Q ss_pred eCC-ccHHHHHHHhcC-CCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCC
Q 009759 357 GDG-PYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 357 G~g-~~~~~l~~l~~~-~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~ 423 (526)
|.+ +..+++++...+ .++++.+++ +++.++|+.||++|.+ .|+++.|++++|+|.|....
T Consensus 191 G~~~~~~~~l~~~~~~~~~v~v~~~~--~~m~~~m~~aDlvI~~-----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 191 SSSNPNLKKLQKFAKLHNNIRLFIDH--ENIAKLMNESNKLIIS-----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp CTTCTTHHHHHHHHHTCSSEEEEESC--SCHHHHHHTEEEEEEE-----SSHHHHHHHHTTCCEEEECC
T ss_pred CCCchHHHHHHHHHhhCCCEEEEeCH--HHHHHHHHHCCEEEEC-----CcHHHHHHHHcCCCEEEEeC
Confidence 765 456777766553 379999998 6999999999999973 25899999999999998654
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=1.2e-07 Score=101.72 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=129.4
Q ss_pred CCCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEEeCCc-cHHHHHHHhcCC-----CeEEecccChhhHHHHHHc
Q 009759 320 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTGM-----PAVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~ivG~g~-~~~~l~~l~~~~-----~V~~~g~v~~~~l~~~~~~ 391 (526)
+++.++++++.++.+ ..-++...++++++|+.+|++...+. ..+.+++.++.. +|.|.+..+.++....|+.
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~ 599 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 599 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGG
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCC
Confidence 345556666655533 23466677888899999998887543 344555555432 5999999999999999999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceeccc---CCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHH
Q 009759 392 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 468 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~---~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~ 468 (526)
+||++=|.-+ +.+++.+||+.+|+|||+-....+..-+... .-|-.-++.. |.++..+...++..|++.+..++
T Consensus 600 ~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~--~~~~Y~~~a~~la~d~~~l~~lr 676 (723)
T 4gyw_A 600 ADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK--NRQEYEDIAVKLGTDLEYLKKVR 676 (723)
T ss_dssp CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS--SHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999977655 3478999999999999987533222211000 0011223344 89999999999999999999999
Q ss_pred HHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHH
Q 009759 469 QAARQEME---KYDWRAATRTIRNEQYNAAIWFWRK 501 (526)
Q Consensus 469 ~~a~~~~~---~fs~~~~~~~~~~~ly~~~l~~~~~ 501 (526)
+.-++... -|+.+..++.++ ..|+++-++|..
T Consensus 677 ~~l~~~~~~s~l~d~~~~~~~le-~a~~~~w~r~~~ 711 (723)
T 4gyw_A 677 GKVWKQRISSPLFNTKQYTMELE-RLYLQMWEHYAA 711 (723)
T ss_dssp HHHHHHHHHSSTTCHHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCcCHHHHHHHHH-HHHHHHHHHHHc
Confidence 88888773 399999999996 899999888764
No 55
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.97 E-value=5.2e-07 Score=91.88 Aligned_cols=330 Identities=12% Similarity=0.027 Sum_probs=171.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCc---c--------ccCceeccccccCCCcc
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQ---E--------FYGAKLIGSRSFPCPWY 183 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~---~--------~~~~~~~~~~~~~~~~~ 183 (526)
++++|+++.. ...|+-.-+..|++.|+++ ||+|+++++...... . ..++....+..-..+..
T Consensus 8 ~~~~vv~~p~-----p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 82 (463)
T 2acv_A 8 KNSELIFIPA-----PGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQ 82 (463)
T ss_dssp HCEEEEEECC-----SSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCCCCCG
T ss_pred CCCEEEEEcC-----cccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCCCCCcc
Confidence 3478888742 2378888899999999999 999999987653211 0 01222222211111110
Q ss_pred ---ccccc-----hhcccHHHHHHHHh---cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC---------Cc---
Q 009759 184 ---QKVPL-----SLALSPRIISEVAR---FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH---------VP--- 240 (526)
Q Consensus 184 ---~~~~~-----~~~~~~~l~~~l~~---~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~---------~~--- 240 (526)
..... .......+.+++++ .++|+|++..... + +..+++..|+|.+...-.. .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~--~-~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 159 (463)
T 2acv_A 83 ELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCV--S-MIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQ 159 (463)
T ss_dssp GGGGSHHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGG--G-GHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSC
T ss_pred cccCCccHHHHHHHHhhhHHHHHHHHhccCCCCeEEEECCcch--h-HHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhc
Confidence 00000 01112245566665 6899998865322 2 3456788999977644210 00
Q ss_pred --------------cccccccccccc-----------chHHH--HHHHHhhcCcEEEeCChhHHH-HHHHhcc---cCCC
Q 009759 241 --------------VYIPRYTFSWLV-----------KPMWL--VIKFLHRAADLTLVPSVAIGK-DLEAARV---TAAN 289 (526)
Q Consensus 241 --------------~~~~~~~~~~~~-----------~~~~~--~~~~~~~~ad~ii~~S~~~~~-~l~~~~~---~~~~ 289 (526)
...+........ ..+.. .....++.++.+++.|-...+ ....... .+..
T Consensus 160 ~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~~ 239 (463)
T 2acv_A 160 IEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIP 239 (463)
T ss_dssp TTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSC
T ss_pred ccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhccccCC
Confidence 001111000000 00000 111234678887776543332 2211110 0123
Q ss_pred cEEEeecCCCCCCCCC--C---cccHHHHHhhcCCCCCCcEEEEEeccc-cc--ccHHHHHHHHHhCCCcEEEE-EeCC-
Q 009759 290 KIRIWKKGVDSESFHP--R---FRSSEMRWRLSNGEPDKPLIVHVGRLG-VE--KSLDFLKRVMDRLPEARIAF-IGDG- 359 (526)
Q Consensus 290 ki~vi~ngid~~~~~~--~---~~~~~~~~~~~~~~~~~~~i~~vG~l~-~~--Kg~~~li~a~~~l~~~~l~i-vG~g- 359 (526)
++..+..-.. ..-.+ . ....+...-+....+...+++..|+.. .. .-+..++++++.. +.++++ +|.+
T Consensus 240 ~v~~vGpl~~-~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~ 317 (463)
T 2acv_A 240 PIYAVGPLLD-LKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHS-GVRFLWSNSAEK 317 (463)
T ss_dssp CEEECCCCCC-SSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHH-TCEEEEECCCCG
T ss_pred cEEEeCCCcc-cccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhC-CCcEEEEECCCc
Confidence 5666553221 11001 0 011223333333233455667778876 22 2255666666664 466655 4443
Q ss_pred -ccHHHHHHHhc-CCCeEEecccChhhHHHHHH--cCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC----ce-e
Q 009759 360 -PYREELEKMFT-GMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP----DI-I 430 (526)
Q Consensus 360 -~~~~~l~~l~~-~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~----e~-v 430 (526)
...+.+.+... ..++.+.+|+++. .+|. ++|++| .-+..++++||+++|+|+|+....+-+ .. +
T Consensus 318 ~~l~~~~~~~~~~~~~~~v~~w~pq~---~vL~h~~~~~fv----th~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv 390 (463)
T 2acv_A 318 KVFPEGFLEWMELEGKGMICGWAPQV---EVLAHKAIGGFV----SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV 390 (463)
T ss_dssp GGSCTTHHHHHHHHCSEEEESSCCHH---HHHHSTTEEEEE----ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHH
T ss_pred ccCChhHHHhhccCCCEEEEccCCHH---HHhCCCccCeEE----ecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHH
Confidence 12222322220 2378899999754 4576 678888 345568999999999999998764322 22 3
Q ss_pred cccCCCceeEee-C-------CCCHHHHHHHHHHhhh-CHHHHHH
Q 009759 431 PEDQDGKIGYLF-N-------PGDLDDCLSKLEPLLY-NQELRET 466 (526)
Q Consensus 431 ~~~~~~~~g~~~-~-------~~d~~~la~ai~~ll~-d~~~~~~ 466 (526)
+..+.|+.+ . .-+.+++.++|.++++ +++.+++
T Consensus 391 ---~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~~~r~~ 432 (463)
T 2acv_A 391 ---KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKK 432 (463)
T ss_dssp ---HTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTCTHHHH
T ss_pred ---HHcCeEEEEecccCCCCccccHHHHHHHHHHHHhccHHHHHH
Confidence 455677777 2 2378999999999996 3444433
No 56
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.89 E-value=3.6e-06 Score=86.04 Aligned_cols=326 Identities=14% Similarity=0.030 Sum_probs=162.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCC-Ccc--------ccCceeccccccCCCccc--
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGV-PQE--------FYGAKLIGSRSFPCPWYQ-- 184 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~-- 184 (526)
++|+|+++.. ...|+-.-+..|++.|+++ ||+|+++++.... ... ..++....+..-..+...
T Consensus 5 ~~~~vl~~p~-----p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 79 (480)
T 2vch_A 5 KTPHVAIIPS-----PGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVDLTDLSSS 79 (480)
T ss_dssp -CCEEEEECC-----SCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCCCTTSCTT
T ss_pred CCcEEEEecC-----cchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhccccCCCceEEEcCCCCCCCCCCc
Confidence 4478888742 2357888899999999998 9999999876521 100 012222211110000000
Q ss_pred -cccc-----hhcccHHHHHHHHh----cCC-CEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCc-------------
Q 009759 185 -KVPL-----SLALSPRIISEVAR----FKP-DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVP------------- 240 (526)
Q Consensus 185 -~~~~-----~~~~~~~l~~~l~~----~~p-DiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~------------- 240 (526)
.... .......+.+++++ .++ |+|++...... +..++...|+|.+...-....
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~---~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 156 (480)
T 2vch_A 80 TRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTD---AFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDE 156 (480)
T ss_dssp CCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGG---GHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchh---HHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHh
Confidence 0000 01112344555554 378 99998653222 245678899997765532110
Q ss_pred ------------cccccc--------cccccc---chHHHH--HHHHhhcCcEEEeCChhH--HHHHHHhc-cc-CCCcE
Q 009759 241 ------------VYIPRY--------TFSWLV---KPMWLV--IKFLHRAADLTLVPSVAI--GKDLEAAR-VT-AANKI 291 (526)
Q Consensus 241 ------------~~~~~~--------~~~~~~---~~~~~~--~~~~~~~ad~ii~~S~~~--~~~l~~~~-~~-~~~ki 291 (526)
...+.. ...... .....+ ....++.++.+++.|-.. ...+.... .. ...++
T Consensus 157 ~~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~v 236 (480)
T 2vch_A 157 TVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPV 236 (480)
T ss_dssp HCCSCGGGCSSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCCE
T ss_pred cCCCcccccCCcccCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCcE
Confidence 000000 000000 011111 122355678887655322 22111111 00 01355
Q ss_pred EEeecCCCCCCCCC-CcccHHHHHhhcCCCCCCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEE-eCCc-------
Q 009759 292 RIWKKGVDSESFHP-RFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP------- 360 (526)
Q Consensus 292 ~vi~ngid~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~iv-G~g~------- 360 (526)
..|..-.....-.. .........-+....++..+++..|+... ..-+..++++++.. +.+++++ |.+.
T Consensus 237 ~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~-~~~~lw~~~~~~~~~~~~~ 315 (480)
T 2vch_A 237 YPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADS-EQRFLWVIRSPSGIANSSY 315 (480)
T ss_dssp EECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHT-TCEEEEEECCCCSSTTTTT
T ss_pred EEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhc-CCcEEEEECCccccccccc
Confidence 55543332110000 00111222222222234566677888743 23355666777766 4666553 4321
Q ss_pred ------------cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC-
Q 009759 361 ------------YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP- 427 (526)
Q Consensus 361 ------------~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~- 427 (526)
..+.+.+..++.++.+.+|+|+. .+++.+++.++-+ .+.-++++||+++|+|+|+....+-.
T Consensus 316 ~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~---~vL~h~~v~~fvt--HgG~~S~~Eal~~GvP~i~~P~~~DQ~ 390 (480)
T 2vch_A 316 FDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQA---QVLAHPSTGGFLT--HCGWNSTLESVVSGIPLIAWPLYAEQK 390 (480)
T ss_dssp TCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHH---HHHHSTTEEEEEE--CCCHHHHHHHHHHTCCEEECCCSTTHH
T ss_pred cccccccchhhhcCHHHHHHhCCCeEEEeCccCHH---HHhCCCCcCeEEe--cccchhHHHHHHcCCCEEeccccccch
Confidence 01112222233345666799753 7798888533222 34457999999999999998765322
Q ss_pred ---ce-ecccCCCceeEeeCC-----CCHHHHHHHHHHhhh
Q 009759 428 ---DI-IPEDQDGKIGYLFNP-----GDLDDCLSKLEPLLY 459 (526)
Q Consensus 428 ---e~-v~~~~~~~~g~~~~~-----~d~~~la~ai~~ll~ 459 (526)
.. + +.-+.|+.+.. -+.++++++|.+++.
T Consensus 391 ~na~~l~---~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 391 MNAVLLS---EDIRAALRPRAGDDGLVRREEVARVVKGLME 428 (480)
T ss_dssp HHHHHHH---HTTCCEECCCCCTTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHH---HHhCeEEEeecccCCccCHHHHHHHHHHHhc
Confidence 12 2 34456666643 378999999999998
No 57
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.88 E-value=3.4e-07 Score=93.93 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=91.2
Q ss_pred CCcEEEEEecccc--cccHHHHHHHHHhCCCcEEEEE-eCCc-------cHHHHHHHhcCCCeEEecccChhhHHHHHHc
Q 009759 322 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP-------YREELEKMFTGMPAVFTGMLLGEELSQAYAS 391 (526)
Q Consensus 322 ~~~~i~~vG~l~~--~Kg~~~li~a~~~l~~~~l~iv-G~g~-------~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~ 391 (526)
...+++..|+... ...+..++++++.. +.+++++ |... ..+.+.+.. ..|+.+.+|+|+. .+|+.
T Consensus 295 ~~vv~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v~~~~pq~---~~L~h 369 (482)
T 2pq6_A 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANC-KKSFLWIIRPDLVIGGSVIFSSEFTNEI-ADRGLIASWCPQD---KVLNH 369 (482)
T ss_dssp TCEEEEECCSSSCCCHHHHHHHHHHHHHT-TCEEEEECCGGGSTTTGGGSCHHHHHHH-TTTEEEESCCCHH---HHHTS
T ss_pred CceEEEecCCcccCCHHHHHHHHHHHHhc-CCcEEEEEcCCccccccccCcHhHHHhc-CCCEEEEeecCHH---HHhcC
Confidence 3455677777642 22356667777765 4666554 4221 223333323 3489999999754 47876
Q ss_pred CcE--EEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCc----eecccCCCceeEeeC-CCCHHHHHHHHHHhhhCHHHH
Q 009759 392 GDV--FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD----IIPEDQDGKIGYLFN-PGDLDDCLSKLEPLLYNQELR 464 (526)
Q Consensus 392 aDv--~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e----~v~~~~~~~~g~~~~-~~d~~~la~ai~~ll~d~~~~ 464 (526)
+++ +| .-+..++++||+++|+|+|+....+-+. .+. +..+.|+.+. .-+.+++.++|.+++.|++ .
T Consensus 370 ~~~~~~v----th~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~--~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~-~ 442 (482)
T 2pq6_A 370 PSIGGFL----THCGWNSTTESICAGVPMLCWPFFADQPTDCRFIC--NEWEIGMEIDTNVKREELAKLINEVIAGDK-G 442 (482)
T ss_dssp TTEEEEE----ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH--HTSCCEEECCSSCCHHHHHHHHHHHHTSHH-H
T ss_pred CCCCEEE----ecCCcchHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCEEEEECCCCCHHHHHHHHHHHHcCCc-H
Confidence 665 66 3455679999999999999987754221 120 2455677665 2479999999999999886 3
Q ss_pred HHHHHHHHHHH
Q 009759 465 ETMGQAARQEM 475 (526)
Q Consensus 465 ~~~~~~a~~~~ 475 (526)
+++++++++..
T Consensus 443 ~~~r~~a~~l~ 453 (482)
T 2pq6_A 443 KKMKQKAMELK 453 (482)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666554
No 58
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.83 E-value=2.6e-07 Score=93.95 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=90.0
Q ss_pred CCCcEEEEEecccccc--cHHHHHHHHHhCCCcEEEE-EeCCcc---HHHHHHHhcCCCeEEecccChhhHHHHHH--cC
Q 009759 321 PDKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPY---REELEKMFTGMPAVFTGMLLGEELSQAYA--SG 392 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~K--g~~~li~a~~~l~~~~l~i-vG~g~~---~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~a 392 (526)
++..+++..|+..... -+..++++++.. +.++++ +|.... .+.+.+.. ..++.+.+|+++. ++|. ++
T Consensus 270 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~~~~~l~~~~~~~~-~~~~~v~~w~pq~---~vL~h~~~ 344 (456)
T 2c1x_A 270 PTSVVYISFGTVTTPPPAEVVALSEALEAS-RVPFIWSLRDKARVHLPEGFLEKT-RGYGMVVPWAPQA---EVLAHEAV 344 (456)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHH-TCCEEEECCGGGGGGSCTTHHHHH-TTTEEEESCCCHH---HHHTSTTE
T ss_pred CcceEEEecCccccCCHHHHHHHHHHHHhc-CCeEEEEECCcchhhCCHHHHhhc-CCceEEecCCCHH---HHhcCCcC
Confidence 4455667778775432 244555666554 455544 453321 11222211 2478999999753 5688 67
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC----ceecccCCC-ceeEeeCC--CCHHHHHHHHHHhhhCHHHHH
Q 009759 393 DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP----DIIPEDQDG-KIGYLFNP--GDLDDCLSKLEPLLYNQELRE 465 (526)
Q Consensus 393 Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~----e~v~~~~~~-~~g~~~~~--~d~~~la~ai~~ll~d~~~~~ 465 (526)
|++| .-+..++++||+++|+|+|+....+-. ..+ .+. +.|+.++. -+.++++++|.+++.|++ .+
T Consensus 345 ~~fv----th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l---~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~-~~ 416 (456)
T 2c1x_A 345 GAFV----THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMV---EDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK-GK 416 (456)
T ss_dssp EEEE----ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH-HH
T ss_pred CEEE----ecCCcchHHHHHHhCceEEecCChhhHHHHHHHH---HHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc-HH
Confidence 8888 345568999999999999998764322 223 334 56776653 378999999999999975 45
Q ss_pred HHHHHHHHHH
Q 009759 466 TMGQAARQEM 475 (526)
Q Consensus 466 ~~~~~a~~~~ 475 (526)
++++++++..
T Consensus 417 ~~r~~a~~l~ 426 (456)
T 2c1x_A 417 KLRENLRALR 426 (456)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555553
No 59
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.77 E-value=1.1e-06 Score=88.66 Aligned_cols=337 Identities=10% Similarity=0.030 Sum_probs=169.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCC------C-ccccCceeccccc-cCCCccc--c
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGV------P-QEFYGAKLIGSRS-FPCPWYQ--K 185 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~------~-~~~~~~~~~~~~~-~~~~~~~--~ 185 (526)
+++|+++. ++ .-|+-.-+.+|++.|+.+| +.|+++++.... . .....++...+.. ++..... .
T Consensus 13 ~~hvv~~P----~p-~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~ 87 (454)
T 3hbf_A 13 LLHVAVLA----FP-FGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDGLPKGYVSSGN 87 (454)
T ss_dssp CCEEEEEC----CC-SSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECCCCCCTTCCCCSC
T ss_pred CCEEEEEc----CC-cccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEecCCCCCCCccccCC
Confidence 46887773 23 3588888999999999999 999999863210 0 0011122211110 1110000 0
Q ss_pred ----ccchh-cccHHHHHHHHh------cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCC---------c-----
Q 009759 186 ----VPLSL-ALSPRIISEVAR------FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHV---------P----- 240 (526)
Q Consensus 186 ----~~~~~-~~~~~l~~~l~~------~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~---------~----- 240 (526)
..... .....+.+.+++ .++|.|++...... +.-.++..|+|.+..+-... +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w---~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~ 164 (454)
T 3hbf_A 88 PREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWF---GADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREK 164 (454)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTT---HHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchH---HHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhh
Confidence 00000 001122333332 36798888654322 34567888999876543200 0
Q ss_pred ------------cccccc---c----ccccc----chHH-H--HHHHHhhcCcEEEeCChhHHHH--HHHhcccCCCcEE
Q 009759 241 ------------VYIPRY---T----FSWLV----KPMW-L--VIKFLHRAADLTLVPSVAIGKD--LEAARVTAANKIR 292 (526)
Q Consensus 241 ------------~~~~~~---~----~~~~~----~~~~-~--~~~~~~~~ad~ii~~S~~~~~~--l~~~~~~~~~ki~ 292 (526)
...+.. . ..... .... . ........++.+++.|-...+. +....... .++.
T Consensus 165 ~~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~-~~v~ 243 (454)
T 3hbf_A 165 TGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF-KLLL 243 (454)
T ss_dssp CCHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTS-SCEE
T ss_pred cCCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcC-CCEE
Confidence 000100 0 00000 0111 1 1223456789999988654432 11111111 2555
Q ss_pred EeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEeccccc--ccHHHHHHHHHhCCCcEEEEE-eCCcc---HHHHH
Q 009759 293 IWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFI-GDGPY---REELE 366 (526)
Q Consensus 293 vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~--Kg~~~li~a~~~l~~~~l~iv-G~g~~---~~~l~ 366 (526)
.|..-+....-.......+...-+....++..+++..|+.... ..+..++++++.. +.+|+.+ |.+.. .+.+.
T Consensus 244 ~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~-~~~flw~~~~~~~~~lp~~~~ 322 (454)
T 3hbf_A 244 NVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEEC-GFPFIWSFRGDPKEKLPKGFL 322 (454)
T ss_dssp ECCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHH-CCCEEEECCSCHHHHSCTTHH
T ss_pred EECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhcCCHhHH
Confidence 5442211000000011122333333223445566777877542 2355566666665 4555554 43221 11111
Q ss_pred HHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC----CceecccCCC-ceeEe
Q 009759 367 KMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDG-KIGYL 441 (526)
Q Consensus 367 ~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~----~e~v~~~~~~-~~g~~ 441 (526)
+.. ..++.+.+|+|+ ..++..+++.++-+ -+.-++++||+++|+|.|+....+- ...+ .+. +.|+.
T Consensus 323 ~~~-~~~~~vv~w~Pq---~~vL~h~~v~~fvt--H~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v---~~~~g~Gv~ 393 (454)
T 3hbf_A 323 ERT-KTKGKIVAWAPQ---VEILKHSSVGVFLT--HSGWNSVLECIVGGVPMISRPFFGDQGLNTILT---ESVLEIGVG 393 (454)
T ss_dssp HHT-TTTEEEESSCCH---HHHHHSTTEEEEEE--CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HTTSCSEEE
T ss_pred hhc-CCceEEEeeCCH---HHHHhhcCcCeEEe--cCCcchHHHHHHcCCCEecCcccccHHHHHHHH---HHhhCeeEE
Confidence 111 237888899975 37788999443333 2445799999999999999876432 1223 342 66776
Q ss_pred eCC--CCHHHHHHHHHHhhhCHHHHHHHHHHHHHH
Q 009759 442 FNP--GDLDDCLSKLEPLLYNQELRETMGQAARQE 474 (526)
Q Consensus 442 ~~~--~d~~~la~ai~~ll~d~~~~~~~~~~a~~~ 474 (526)
++. -+.+++.++|.+++.+++ .+++++++++.
T Consensus 394 l~~~~~~~~~l~~av~~ll~~~~-~~~~r~~a~~l 427 (454)
T 3hbf_A 394 VDNGVLTKESIKKALELTMSSEK-GGIMRQKIVKL 427 (454)
T ss_dssp CGGGSCCHHHHHHHHHHHHSSHH-HHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHCCCh-HHHHHHHHHHH
Confidence 653 478999999999998852 34444444443
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.50 E-value=1.6e-05 Score=77.64 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=69.1
Q ss_pred HHHhhcCCCCCCcEEEEEec-cccccc--HHHHHHHHHhC--CCcEEEEEeCCccHHHHHHHhcCC------Ce-EEecc
Q 009759 312 MRWRLSNGEPDKPLIVHVGR-LGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM------PA-VFTGM 379 (526)
Q Consensus 312 ~~~~~~~~~~~~~~i~~vG~-l~~~Kg--~~~li~a~~~l--~~~~l~ivG~g~~~~~l~~l~~~~------~V-~~~g~ 379 (526)
.+..++....++.+++..|. ....|. .+.+.++++.+ .+++++++|...+.+..+++.+.. ++ .+.|.
T Consensus 170 ~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~ 249 (348)
T 1psw_A 170 TCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGE 249 (348)
T ss_dssp HHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTT
T ss_pred HHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCc
Confidence 34444432234455667776 445555 34566655554 378999999766665555555432 34 56788
Q ss_pred cChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 380 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 380 v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
.+-.++..+++.||++|.... | .+-.|.|+|+|+|+-
T Consensus 250 ~sl~e~~ali~~a~l~I~~Ds----g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 250 TQLDQAVILIAACKAIVTNDS----G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp SCHHHHHHHHHTSSEEEEESS----H-HHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHhCCEEEecCC----H-HHHHHHHcCCCEEEE
Confidence 777899999999999996642 3 344499999999975
No 61
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.07 E-value=0.00013 Score=78.69 Aligned_cols=255 Identities=12% Similarity=-0.003 Sum_probs=136.8
Q ss_pred HHhcCCCEEEEEecCCccccccccc-----ccccchHHHHHHHHhhcCcEEEeCChhHHHHHHHhcccCCCcEEEeecCC
Q 009759 224 AKLLCVPIVMSYHTHVPVYIPRYTF-----SWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV 298 (526)
Q Consensus 224 ~~~~~~p~v~~~h~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~~~~~~~ki~vi~ngi 298 (526)
.+..+..+|.+.|+........... ..................|.+++.|+...+.+.+.++.+..++..+..+-
T Consensus 432 ~k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR 511 (729)
T 3l7i_A 432 NKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPR 511 (729)
T ss_dssp CCCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGG
T ss_pred ccCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCc
Confidence 3556777888899862211111000 00111112222334567899999999999999988876545555544332
Q ss_pred CCCCCCCC---cccHHHHHhhcCCCCCCcEEEEEeccccc-------------ccHHHHHHHHHhCCCcEEEEEeCCccH
Q 009759 299 DSESFHPR---FRSSEMRWRLSNGEPDKPLIVHVGRLGVE-------------KSLDFLKRVMDRLPEARIAFIGDGPYR 362 (526)
Q Consensus 299 d~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~vG~l~~~-------------Kg~~~li~a~~~l~~~~l~ivG~g~~~ 362 (526)
....+... .....++.++++ ..++.+|+|+-++... .+++.+.+.+. .++.+++-.. +.
T Consensus 512 ~D~l~~~~~~~~~~~~~~~~~~~-~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~li~r~H-p~- 586 (729)
T 3l7i_A 512 NDVLVNRANDQEYLDEIRTHLNL-PSDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELG--DDYVILLRMH-YL- 586 (729)
T ss_dssp GHHHHHSTTCHHHHHHHHHHTTC-CSSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHT--TTEEEEECCC-HH-
T ss_pred hHHHhcccchHHHHHHHHHHhCC-CCCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcC--CCeEEEEecC-cc-
Confidence 21122111 112345555654 5678899999877543 23444444443 3666666443 11
Q ss_pred HHHHHHhc--CC--CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCcee-------c
Q 009759 363 EELEKMFT--GM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII-------P 431 (526)
Q Consensus 363 ~~l~~l~~--~~--~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v-------~ 431 (526)
+..... .. .+.... +..++.++|..||++| .-++.+++|++..++|||....- ..++. .
T Consensus 587 --~~~~~~~~~~~~~~~~~~--~~~di~~ll~~aD~lI-----TDySSv~fD~~~l~kPiif~~~D-~~~Y~~~~rg~y~ 656 (729)
T 3l7i_A 587 --ISNALDLSGYENFAIDVS--NYNDVSELFLISDCLI-----TDYSSVMFDYGILKRPQFFFAYD-IDKYDKGLRGFYM 656 (729)
T ss_dssp --HHTTCCCTTCTTTEEECT--TCSCHHHHHHTCSEEE-----ESSCTHHHHHGGGCCCEEEECTT-TTTTTSSCCSBSS
T ss_pred --hhccccccccCCcEEeCC--CCcCHHHHHHHhCEEE-----eechHHHHhHHhhCCCEEEecCC-HHHHhhccCCccc
Confidence 111111 11 222222 2358999999999999 34678999999999999976211 11111 0
Q ss_pred ccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 009759 432 EDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 495 (526)
Q Consensus 432 ~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~a~~~~~~fs~~~~~~~~~~~ly~~~ 495 (526)
+..+...|-++. +.++|.++|...........+..+.-++..-.|.-.+.++++.+.+++..
T Consensus 657 d~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~ 718 (729)
T 3l7i_A 657 NYMEDLPGPIYT--EPYGLAKELKNLDKVQQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDI 718 (729)
T ss_dssp CTTSSSSSCEES--SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHH
T ss_pred ChhHhCCCCeEC--CHHHHHHHHhhhhccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcC
Confidence 101223455555 89999999988765433332222222222212333355666655555443
No 62
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.95 E-value=0.002 Score=62.00 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=79.6
Q ss_pred CCcEEEEEeccccccc--HHHHHHHHHhC--CCcEEEEE-eCCccHHHHHHHhcCC-CeEEecccChhhHHHHHHcCcEE
Q 009759 322 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVF 395 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg--~~~li~a~~~l--~~~~l~iv-G~g~~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~aDv~ 395 (526)
++.+++..|.-...|. .+.+.++++.+ .++++++. |...+.+..+++.+.. ++.+.|..+-.|+..+++.||++
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSEE
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCEE
Confidence 3445566665555554 45777777776 36888887 5333344445554432 57778888889999999999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeE-----eeCCCCHHHHHHHHHHhhhC
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY-----LFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~-----~~~~~d~~~la~ai~~ll~d 460 (526)
|..- .|..-+ |.|.|+|+|+--.+..+....+..+....+ ....-+++++.+++.++++.
T Consensus 258 I~~D----SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 258 VSVD----TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEES----SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EecC----CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 9552 244444 788999999762221111111101111100 12233678888888877753
No 63
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.94 E-value=0.0017 Score=63.15 Aligned_cols=260 Identities=14% Similarity=0.062 Sum_probs=135.3
Q ss_pred CCCCcEEEEEeccCCCCccCchHH--HHHHHHHHHHHC--CCeEEEEEeCCCCCc--cccCceeccccccCCCccccccc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKN--RFQNFIKYLREM--GDEVMVVTTHEGVPQ--EFYGAKLIGSRSFPCPWYQKVPL 188 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~--~~~~l~~~L~~~--G~~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 188 (526)
.-..||||++.. ++.++ ....++++|++. +.++++++......- ....+. .+..+.... ...
T Consensus 5 ~l~~~~iLvi~~-------~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~p~vd--~vi~~~~~~---~~~ 72 (349)
T 3tov_A 5 ELDYKRIVVTFL-------MHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYNPNID--ELIVVDKKG---RHN 72 (349)
T ss_dssp CCTTCEEEEECC-------CCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSCTTCS--EEEEECCSS---HHH
T ss_pred CCCCCEEEEEec-------CcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCCCcc--EEEEeCccc---ccc
Confidence 344589999854 34444 457789999987 889999987542110 011111 111111110 011
Q ss_pred hhcccHHHHHHHHhcCC-CEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCc
Q 009759 189 SLALSPRIISEVARFKP-DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 267 (526)
Q Consensus 189 ~~~~~~~l~~~l~~~~p-DiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 267 (526)
.+.....+.+.+++.++ |+++.-....- ..++....++|..+.+....... . .+
T Consensus 73 ~~~~~~~l~~~Lr~~~y~D~vidl~~~~r---s~~l~~~~~a~~riG~~~~~~~~----~------------------~~ 127 (349)
T 3tov_A 73 SISGLNEVAREINAKGKTDIVINLHPNER---TSYLAWKIHAPITTGMSHFLFRP----F------------------MT 127 (349)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCSHH---HHHHHHHHCCSEEEECCCTTTGG----G------------------CS
T ss_pred cHHHHHHHHHHHhhCCCCeEEEECCCChH---HHHHHHHhCCCeEEecCCCCccc----c------------------cc
Confidence 12233456677788899 99987654322 23345667888776543311000 0 01
Q ss_pred EEEeC-------ChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHH---HHHhhcCCCCCCcEEEEEeccccccc
Q 009759 268 LTLVP-------SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGRLGVEKS 337 (526)
Q Consensus 268 ~ii~~-------S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~vG~l~~~Kg 337 (526)
..+.. .+...+.+...+ .+. ........+.+...... .....++...++.+++..|.-...|.
T Consensus 128 ~~~~~~~~~~h~v~r~~~ll~~lg-~~~------~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~~~~i~i~pga~~~~k~ 200 (349)
T 3tov_A 128 KYTRLDRKTRHAADMYINVLEQLG-VTD------TSNSGLHIEICEEWRCQAQEFYSSHGLTDTDILIGFNIGSAVPEKR 200 (349)
T ss_dssp EECCCCTTTSCHHHHHHHHHHHTT-CCC------CCCCCCCCCCCHHHHHHHHHHHHHTTCCTTCCEEEEECCCSSGGGC
T ss_pred ccccCCCCCccHHHHHHHHHHHhC-CCc------cCCCceeeeCCHHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCccCC
Confidence 11100 011122222222 110 00011111211111111 11222332234445566675444554
Q ss_pred --HHHHHHHHHhC--CCcEEEEEeCCccHHHHHHHhcCC---CeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHH
Q 009759 338 --LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 410 (526)
Q Consensus 338 --~~~li~a~~~l--~~~~l~ivG~g~~~~~l~~l~~~~---~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilE 410 (526)
.+.+.++++.+ .+.+++++|...+.+..++..+.. .+.+.|..+-.++..+++.||++|..- .|..-+
T Consensus 201 wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~~i~~D----sG~~Hl- 275 (349)
T 3tov_A 201 WPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNLLITND----SGPMHV- 275 (349)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSEEEEES----SHHHHH-
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCEEEECC----CCHHHH-
Confidence 34555555544 268899999766666666655433 356678888889999999999999652 244444
Q ss_pred HHHcCCcEEEeCC
Q 009759 411 AMSSGIPVVGVRA 423 (526)
Q Consensus 411 Ama~G~PvI~~~~ 423 (526)
|.|+|+|+|+--.
T Consensus 276 Aaa~g~P~v~lfg 288 (349)
T 3tov_A 276 GISQGVPIVALYG 288 (349)
T ss_dssp HHTTTCCEEEECS
T ss_pred HHhcCCCEEEEEC
Confidence 9999999998643
No 64
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=97.86 E-value=0.011 Score=50.88 Aligned_cols=332 Identities=15% Similarity=0.133 Sum_probs=188.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.|||.++... -....|.....++.-..+.+.||+|+++...+..-..... ..-..+.++... .....+..
T Consensus 1 smricifmar--glegcgvtkfsleqrdwfiknghevtlvyakdksftrtss---hdhksfsipvil-----akeydkal 70 (401)
T 1xv5_A 1 SMRICIFMAR--GLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSS---HDHKSFSIPVIL-----AKEYDKAL 70 (401)
T ss_dssp CCEEEEEETT--CCCSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTTTS---SSCTTTCEEECT-----TTCHHHHH
T ss_pred CceEEEEeec--cccccCceeeehhhhhhhhcCCcEEEEEEecccccccccc---ccCccccceeEe-----hhhhHHHh
Confidence 3899998664 2456788888899999999999999999876532111100 000111111100 00112333
Q ss_pred HHHHhcCCCEEEECCCchH-----HH---HHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEE
Q 009759 198 SEVARFKPDIIHASSPGIM-----VF---GALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 269 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~-----~~---~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 269 (526)
+++. +.||+++++.... .. --++-.-+..+++|++-||+.-....+.. -.....+++|.+
T Consensus 71 klvn--dcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlslrrnl----------gleetvrradvi 138 (401)
T 1xv5_A 71 KLVN--DCDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLRRNL----------GLEETVRRADVI 138 (401)
T ss_dssp HHHT--SCSEEEEEECCBTTSCHHHHHHHHHHHHHSCTTSEEEEEECCCSHHHHTTBS----------SHHHHHHHCSEE
T ss_pred hhhc--cCcEEEEccCccchhHHHHHhhHHHHHhcCCCceEEEEEeccchhhhhhhhc----------ChHHhhhhhceE
Confidence 4443 7899888753211 11 11122223467899999997543322211 134457889999
Q ss_pred EeCChh---HHHHHHHhcccCCCcEEEee---cCCCCCCCCCCcccHHHHHhhcCCCCCC---cEEEEEecccccccHHH
Q 009759 270 LVPSVA---IGKDLEAARVTAANKIRIWK---KGVDSESFHPRFRSSEMRWRLSNGEPDK---PLIVHVGRLGVEKSLDF 340 (526)
Q Consensus 270 i~~S~~---~~~~l~~~~~~~~~ki~vi~---ngid~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~vG~l~~~Kg~~~ 340 (526)
+..|+. .+-.+.++++. .+.... ..-..-.|.|+.+....|..+-. +-.. .+--++||-..+||+-.
T Consensus 139 fshsdngdfnkvlmkewype---tvslfddieeaptvynfqppmdivkvrstywk-dvseinmninrwigrtttwkgfyq 214 (401)
T 1xv5_A 139 FSHSDNGDFNKVLMKEWYPE---TVSLFDDIEEAPTVYNFQPPMDIVKVRSTYWK-DVSEINMNINRWIGRTTTWKGFYQ 214 (401)
T ss_dssp EESCTTSHHHHTHHHHHSCS---SCCSSSCCCCCCCEEECCCCBCHHHHHHHHCC-CGGGCEEEEEEEECCSCGGGCHHH
T ss_pred EecCCCCcHHHHHHHhhccc---hhhhhcchhhCCceeccCCCceeeeeehhhhc-cHHHhhcchhhhhcccchhHhHHH
Confidence 998863 33344555531 111110 00001124455444444444321 1111 23358999999999999
Q ss_pred HHHHHHhC--C-CcEEEEEeCCccHHHHHHHhcCCC-------------------eEEecccChhhHHHHHHcCcEEEec
Q 009759 341 LKRVMDRL--P-EARIAFIGDGPYREELEKMFTGMP-------------------AVFTGMLLGEELSQAYASGDVFVMP 398 (526)
Q Consensus 341 li~a~~~l--~-~~~l~ivG~g~~~~~l~~l~~~~~-------------------V~~~g~v~~~~l~~~~~~aDv~v~p 398 (526)
+.+.-++. | .-.-++-|-......+.-..++.. ..++.-.-..++.+-++.+-+....
T Consensus 215 mfdfhekflkpagkstvmeglerspafiaikekgipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyql 294 (401)
T 1xv5_A 215 MFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSGFGYQL 294 (401)
T ss_dssp HHHHHHHTTTTTTCEEEEECCCCSHHHHHHHHTTCCEEEECGGGGGGCCCSSSCCEEEESCCCHHHHHHHHHTEEEEEEC
T ss_pred HhhHHHHhcCccchhhhhhhhhcCCceEEEcccCCchhhcCcchhhhhcCCCCCcchhhhheecHHHHHHhhhcCcccch
Confidence 88877766 3 233455553322222222112212 3444434456788888888888776
Q ss_pred CC------CCCCcHHHHHHHHcCCcEEEeCCCCCC-c-ee--cccCCCcee-EeeCCCCHHHHHHHHHHhhhCHHHHHHH
Q 009759 399 SE------SETLGLVVLEAMSSGIPVVGVRAGGIP-D-II--PEDQDGKIG-YLFNPGDLDDCLSKLEPLLYNQELRETM 467 (526)
Q Consensus 399 s~------~e~~~~~ilEAma~G~PvI~~~~gg~~-e-~v--~~~~~~~~g-~~~~~~d~~~la~ai~~ll~d~~~~~~~ 467 (526)
|. ....-.+-+|--|||+..|-....|.. . -+ .+......| +.++.+|.++-.+.|.++..|..++.+-
T Consensus 295 sklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydre 374 (401)
T 1xv5_A 295 SKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIWFDENDMESTFERIKELSSDRALYDRE 374 (401)
T ss_dssp CCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCEEECTTCHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceEEecCCchHHHHHHHHHhccchhhhhHH
Confidence 64 246678899999999877655332211 0 00 000122334 4578889999999999999999999999
Q ss_pred HHHHHHHH
Q 009759 468 GQAARQEM 475 (526)
Q Consensus 468 ~~~a~~~~ 475 (526)
++.+.+++
T Consensus 375 rekayefl 382 (401)
T 1xv5_A 375 REKAYEFL 382 (401)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998887
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.99 E-value=0.00047 Score=61.94 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=38.1
Q ss_pred CeEEecccChhhHHHHHH-cCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCC
Q 009759 373 PAVFTGMLLGEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 373 ~V~~~g~v~~~~l~~~~~-~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~g 424 (526)
++...+|+ +++..+|+ .||++| .-+..++++|++++|+|.|.-...
T Consensus 115 ~v~v~~f~--~~m~~~l~~~AdlvI----shaGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 115 KVIGFDFS--TKMQSIIRDYSDLVI----SHAGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp EEEECCSS--SSHHHHHHHHCSCEE----ESSCHHHHHHHHHTTCCCCEECCS
T ss_pred eEEEeecc--chHHHHHHhcCCEEE----ECCcHHHHHHHHHhCCCEEEEcCc
Confidence 45666777 69999999 999999 345578999999999999887654
No 66
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.10 E-value=0.024 Score=59.74 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=85.9
Q ss_pred CCCcEEEEEecccccccHHH-HHHHHH-------h-------------CCCcEEEEEeCCc----cHHHHH----HH---
Q 009759 321 PDKPLIVHVGRLGVEKSLDF-LKRVMD-------R-------------LPEARIAFIGDGP----YREELE----KM--- 368 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~Kg~~~-li~a~~-------~-------------l~~~~l~ivG~g~----~~~~l~----~l--- 368 (526)
++...++++-|+...|...+ ++..+. . ....++++.|... ..+.+- ..
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 45777899999999999777 443322 2 2357788888431 112221 11
Q ss_pred hcCC-------CeEEecccChhhHHHHHHcCcEEEecCC--CCCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCcee
Q 009759 369 FTGM-------PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIG 439 (526)
Q Consensus 369 ~~~~-------~V~~~g~v~~~~l~~~~~~aDv~v~ps~--~e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g 439 (526)
+... +|.|+....-.-...++.+||+-...|+ .|..|..=+-+|..|.+.|++-.|..-|+..+ ...+|+
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~-vG~eN~ 756 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITRE-IGEDNV 756 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHH-HCGGGS
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHH-cCcccE
Confidence 1111 4888888776777789999999998776 69999999999999999999998887777621 124577
Q ss_pred EeeC
Q 009759 440 YLFN 443 (526)
Q Consensus 440 ~~~~ 443 (526)
|++-
T Consensus 757 fiFG 760 (879)
T 1ygp_A 757 FLFG 760 (879)
T ss_dssp EEES
T ss_pred EEcc
Confidence 7765
No 67
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=92.98 E-value=0.048 Score=43.80 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=49.9
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
.+..++||||+|-+. + .....+.+.|.+.||+|.-.+.+
T Consensus 3 ~m~~r~~rILiVdD~-~--------~~~~~l~~~L~~~G~~v~~~a~~-------------------------------- 41 (123)
T 2lpm_A 3 HMTERRLRVLVVEDE-S--------MIAMLIEDTLCELGHEVAATASR-------------------------------- 41 (123)
T ss_dssp CCCCCCCCEEEESSS-T--------TTSHHHHHHHHHHCCCCCBCSCC--------------------------------
T ss_pred CCCCCCCEEEEEeCC-H--------HHHHHHHHHHHHCCCEEEEEECC--------------------------------
Confidence 456778999999764 2 22355667778889987422111
Q ss_pred cHHHHHHHHhcCCCEEEECC--CchHHHHHHHHHHhcCCCEEE
Q 009759 193 SPRIISEVARFKPDIIHASS--PGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~--~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.....+.+++.+||+|+..- |...++......+..++|+|+
T Consensus 42 g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~ 84 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIF 84 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEE
Confidence 12455667778999999953 444444444444556788664
No 68
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=91.82 E-value=6.4 Score=39.31 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=128.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
..|||+++ |.+..-..+++.|.+.||+|+++-.+........ ....+..+. .-......
T Consensus 2 ~~M~iiI~----------G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~--~~~~~~~i~---------Gd~~~~~~ 60 (461)
T 4g65_A 2 NAMKIIIL----------GAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ--DKYDLRVVN---------GHASHPDV 60 (461)
T ss_dssp CCEEEEEE----------CCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH--HHSSCEEEE---------SCTTCHHH
T ss_pred CcCEEEEE----------CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH--HhcCcEEEE---------EcCCCHHH
Confidence 46999777 3347778999999999999999965432111110 000111110 01112344
Q ss_pred HHHHHhcCCCEEEECCCc--hHHHHHHHHHHhcCCC-EEEEEecCCcccccccccccccchHHHHHHHHh---hcCcEEE
Q 009759 197 ISEVARFKPDIIHASSPG--IMVFGALIIAKLLCVP-IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH---RAADLTL 270 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~--~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ad~ii 270 (526)
.+...-.+.|++++.... .....+.+++...+.+ ++.-..+.. +... .+.... -..|.++
T Consensus 61 L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~iar~~~~~--~~~~------------~~~l~~~~~~giD~iI 126 (461)
T 4g65_A 61 LHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSPQ--YLAQ------------KEALFKSGAIPVDHLI 126 (461)
T ss_dssp HHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEEEECCCHH--HHTT------------HHHHTTTSSSCCSEEE
T ss_pred HHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCccceeEeccch--hhhh------------hhhhhhcccCCcceee
Confidence 444444588999886542 3334444444444554 444444321 1100 011111 1357777
Q ss_pred eCChhHHHHHHHhcccC---------CCcEEEeecCCCCCCCCCCcccHHHHHhhc----------------CC-----C
Q 009759 271 VPSVAIGKDLEAARVTA---------ANKIRIWKKGVDSESFHPRFRSSEMRWRLS----------------NG-----E 320 (526)
Q Consensus 271 ~~S~~~~~~l~~~~~~~---------~~ki~vi~ngid~~~~~~~~~~~~~~~~~~----------------~~-----~ 320 (526)
.+.....+.+.+.-..+ ..++.++.--+.....-....-.+++..+. .+ .
T Consensus 127 sPe~~~a~~I~~~i~~p~~~~~~~f~~g~~~l~e~~v~~~s~l~g~~l~~l~~~~p~~~~~I~aI~R~g~~iiP~g~t~i 206 (461)
T 4g65_A 127 APEELVTSYIERLIQYPGALQVVSFAEEKVSLVAVKAYYGGPLVGNALSALREHMPHIDTRVAAIFRQGRPIRPQGTTII 206 (461)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEETTTTEEEEEEECCTTSSSTTCBHHHHHHTSTTSCEEEEEEEETTEEECCCTTCBC
T ss_pred cHHHHHHHHHHHhccCCCeEEEEEeccceEEEEEEEecCCCeecCCcHHHHHhhCCCCceEEEEEEECCeeccCCCCcee
Confidence 77666666665543211 223332222121111000011111211110 00 0
Q ss_pred CCCcEEEEEecccccccHHHHHHHHHhC--CCcEEEEEeCCccHHH--------------------HHHHhcCC--CeEE
Q 009759 321 PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYREE--------------------LEKMFTGM--PAVF 376 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~Kg~~~li~a~~~l--~~~~l~ivG~g~~~~~--------------------l~~l~~~~--~V~~ 376 (526)
...-.+.++| ..+.++.+.+.+... +--++.|+|.|..-.. ++.+.+.+ -+.+
T Consensus 207 ~~gD~v~~i~---~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi 283 (461)
T 4g65_A 207 EADDEVFFVA---ASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVF 283 (461)
T ss_dssp CTTCEEEEEE---ETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred cCCCEEEEEe---ccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEE
Confidence 1112233333 245666666666544 2246888887653333 33333322 1456
Q ss_pred ecccChhhHHH--HHHcCcEEEecCCC-CCCcHHHHHHHHcCCcEEEeCC
Q 009759 377 TGMLLGEELSQ--AYASGDVFVMPSES-ETLGLVVLEAMSSGIPVVGVRA 423 (526)
Q Consensus 377 ~g~v~~~~l~~--~~~~aDv~v~ps~~-e~~~~~ilEAma~G~PvI~~~~ 423 (526)
.|--.+.++.. =+..+|+++..+.. |.-=+..+-|-.+|.+=+.+.+
T Consensus 284 ~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~v 333 (461)
T 4g65_A 284 CGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLI 333 (461)
T ss_dssp ESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred eccccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccc
Confidence 67666555443 36888999877654 3333455667788887666543
No 69
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=91.08 E-value=0.61 Score=41.24 Aligned_cols=91 Identities=14% Similarity=0.256 Sum_probs=50.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
..++|||+++.+ |.+.-+..+++++.+ .+++|..+.++.............+++.+..+. ........+-
T Consensus 2 ~~~~~riavl~S--------G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~-~~~~~r~~~d 72 (215)
T 3tqr_A 2 NREPLPIVVLIS--------GNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIPH-EEFPSRTDFE 72 (215)
T ss_dssp --CCEEEEEEES--------SCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCCEEECCG-GGSSSHHHHH
T ss_pred CCCCcEEEEEEe--------CCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCc-cccCchhHhH
Confidence 345789999875 333567778888766 467888777754322111111112222222111 0011112223
Q ss_pred HHHHHHHHhcCCCEEEECCCc
Q 009759 194 PRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~ 214 (526)
..+.+.+++.+||+|++-.+.
T Consensus 73 ~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 73 STLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp HHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEccch
Confidence 568889999999999998753
No 70
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=89.37 E-value=1.6 Score=38.99 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.+.|||+++... .+..+..++++|.+. +++|..+..+.............+++.+.... ..+...-.+-
T Consensus 20 ~~~~rI~~l~SG--------~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~-~~~~~r~~~~ 90 (229)
T 3auf_A 20 GHMIRIGVLISG--------SGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDP-AAYPSRTAFD 90 (229)
T ss_dssp TTCEEEEEEESS--------CCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCG-GGSSSHHHHH
T ss_pred CCCcEEEEEEeC--------CcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECc-ccccchhhcc
Confidence 445799999753 225678888888876 67877666653322111001111222221110 0000111123
Q ss_pred HHHHHHHHhcCCCEEEECCC
Q 009759 194 PRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~ 213 (526)
..+.+.+++.+||+|++-.+
T Consensus 91 ~~~~~~l~~~~~Dliv~agy 110 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAGY 110 (229)
T ss_dssp HHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEcCh
Confidence 46778889999999999875
No 71
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=88.93 E-value=2.3 Score=34.38 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.+.++||||+|-+. + .....+.+.|.+.|++++..+.+.
T Consensus 8 ~m~k~~rILiVDD~-~--------~~r~~l~~~L~~~G~~~v~~a~~g-------------------------------- 46 (134)
T 3to5_A 8 ILNKNMKILIVDDF-S--------TMRRIVKNLLRDLGFNNTQEADDG-------------------------------- 46 (134)
T ss_dssp -CCTTCCEEEECSC-H--------HHHHHHHHHHHHTTCCCEEEESSH--------------------------------
T ss_pred HhCCCCEEEEEeCC-H--------HHHHHHHHHHHHcCCcEEEEECCH--------------------------------
Confidence 35677999999763 1 344566777888998754332211
Q ss_pred HHHHHHHHhcCCCEEEECC--CchHHHHHHHHHH----hcCCCEEEEE
Q 009759 194 PRIISEVARFKPDIIHASS--PGIMVFGALIIAK----LLCVPIVMSY 235 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~--~~~~~~~~~~~~~----~~~~p~v~~~ 235 (526)
....+.+++.+||+|+... |...++......+ ...+|+|+..
T Consensus 47 ~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lT 94 (134)
T 3to5_A 47 LTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMIT 94 (134)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEE
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEE
Confidence 1445566777999999954 4444444333222 2467876543
No 72
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=87.81 E-value=1.8 Score=38.31 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=47.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--eEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--EVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||+++... .+..+..++++|.+.++ +|..+.++.............+++.+.... ......-.+-..+
T Consensus 2 ~rI~vl~SG--------~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~-~~~~~r~~~~~~~ 72 (216)
T 2ywr_A 2 LKIGVLVSG--------RGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQR-KEFPSKKEFEERM 72 (216)
T ss_dssp EEEEEEECS--------CCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCG-GGSSSHHHHHHHH
T ss_pred CEEEEEEeC--------CcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCc-ccccchhhhhHHH
Confidence 689888652 22567888999988887 766666554322111111112222221110 0011111123467
Q ss_pred HHHHHhcCCCEEEECCC
Q 009759 197 ISEVARFKPDIIHASSP 213 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~ 213 (526)
.+.+++.+||+|++-.+
T Consensus 73 ~~~l~~~~~Dliv~a~y 89 (216)
T 2ywr_A 73 ALELKKKGVELVVLAGF 89 (216)
T ss_dssp HHHHHHTTCCEEEESSC
T ss_pred HHHHHhcCCCEEEEeCc
Confidence 78889999999999775
No 73
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=87.65 E-value=1.8 Score=38.10 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=47.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||+++... .+..+..++++|.+. +++|..+.++.............+++.+.... ..+...-.+-..+
T Consensus 4 ~ki~vl~sG--------~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~-~~~~~~~~~~~~~ 74 (212)
T 3av3_A 4 KRLAVFASG--------SGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSP-KDYPSKAAFESEI 74 (212)
T ss_dssp EEEEEECCS--------SCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCG-GGSSSHHHHHHHH
T ss_pred cEEEEEEEC--------CcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCc-ccccchhhhHHHH
Confidence 688888642 224677888888877 68887777654322111111111222221110 0000111123467
Q ss_pred HHHHHhcCCCEEEECCCc
Q 009759 197 ISEVARFKPDIIHASSPG 214 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~ 214 (526)
.+.+++.+||+|++-.+.
T Consensus 75 ~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 75 LRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHhcCCCEEEEchhh
Confidence 788899999999998753
No 74
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=86.73 E-value=3.9 Score=38.49 Aligned_cols=80 Identities=21% Similarity=0.170 Sum_probs=45.5
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc----ccC------ceeccccccCCCcccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE----FYG------AKLIGSRSFPCPWYQK 185 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~ 185 (526)
+++|||+|+... .......++|.+.||+|..+.+....+.. ... ....+++.+....
T Consensus 1 s~~mrIvf~Gt~----------~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~--- 67 (314)
T 1fmt_A 1 SESLRIIFAGTP----------DFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVS--- 67 (314)
T ss_dssp CCCCEEEEEECS----------HHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSC---
T ss_pred CCCCEEEEEecC----------HHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCC---
Confidence 356999999652 44556667777789999877665322110 000 0011122111110
Q ss_pred ccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 186 VPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 186 ~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
+ ....+.+.+++.+||++++-.+
T Consensus 68 ----~-~~~~~~~~l~~~~~Dliv~~~y 90 (314)
T 1fmt_A 68 ----L-RPQENQQLVAELQADVMVVVAY 90 (314)
T ss_dssp ----S-CSHHHHHHHHHTTCSEEEEESC
T ss_pred ----C-CCHHHHHHHHhcCCCEEEEeec
Confidence 0 0246778889999999998765
No 75
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=86.38 E-value=4.3 Score=32.97 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=34.7
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeE-EEEEeCCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEV-MVVTTHEG 162 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V-~vi~~~~~ 162 (526)
...||++|+....|+ ..-.....+.++.++.+.||+| .|+...++
T Consensus 10 ~~~~~~~ivv~~~Py--g~~~a~~Al~~A~aala~g~eV~~VFf~~DG 55 (140)
T 2d1p_A 10 HGSMRFAIVVTGPAY--GTQQASSAFQFAQALIADGHELSSVFFYREG 55 (140)
T ss_dssp -CCCEEEEEECSCSS--SSSHHHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred CCceEEEEEEcCCCC--CcHHHHHHHHHHHHHHHCCCccCEEEEechH
Confidence 456999999887554 3445577899999999999999 88876654
No 76
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=86.19 E-value=1.5 Score=38.67 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
+.+++||+++.. |.+.-+..+++++.+. +++|..+.++.............+++.+..+.. . + .
T Consensus 5 ~~~~~ri~vl~S--------G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~-~----~-~ 70 (215)
T 3kcq_A 5 MKKELRVGVLIS--------GRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRK-P----L-D 70 (215)
T ss_dssp --CCEEEEEEES--------SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBT-T----B-C
T ss_pred CCCCCEEEEEEE--------CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcc-c----C-C
Confidence 455679998875 3335677888887654 367777776543221111111122222211110 0 0 0
Q ss_pred cHHHHHHHHhcCCCEEEECCCc
Q 009759 193 SPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
...+.+.+++.+||+|++-.+.
T Consensus 71 ~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 71 IEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHHHHHHTTCSEEEESSCC
T ss_pred hHHHHHHHHHhCCCEEEEeCCc
Confidence 1578889999999999998753
No 77
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=85.64 E-value=10 Score=35.95 Aligned_cols=227 Identities=8% Similarity=0.027 Sum_probs=106.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+++|+++..... ...-.......+-+++.+.|+++.++....... .....+.
T Consensus 3 ~~~Ig~i~p~~~--~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~--------------------------~~~~~i~ 54 (350)
T 3h75_A 3 LTSVVFLNPGNS--TETFWVSYSQFMQAAARDLGLDLRILYAERDPQ--------------------------NTLQQAR 54 (350)
T ss_dssp CCEEEEEECSCT--TCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHH--------------------------HHHHHHH
T ss_pred CCEEEEECCCCC--CChHHHHHHHHHHHHHHHcCCeEEEEECCCCHH--------------------------HHHHHHH
Confidence 468999976421 102234556677778888899999885432210 0112445
Q ss_pred HHHHh-cCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHh-hcCcEEEeCCh-
Q 009759 198 SEVAR-FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH-RAADLTLVPSV- 274 (526)
Q Consensus 198 ~~l~~-~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ad~ii~~S~- 274 (526)
.++.+ .++|.|++..........+..+...++|+|+............... ...-+ ...+.|.+...
T Consensus 55 ~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~----------~~~~~~~~~~~V~~D~~~ 124 (350)
T 3h75_A 55 ELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQ----------SRQNYSDWIGSMVGDDEE 124 (350)
T ss_dssp HHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC----------------------CEEEEECCHHH
T ss_pred HHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcC----------CchhccceeeeecCChHH
Confidence 55555 6999887764322222233345567999987655432211000000 00000 00222222221
Q ss_pred ---hHHHHHHHhcc---cCC-CcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHh
Q 009759 275 ---AIGKDLEAARV---TAA-NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 347 (526)
Q Consensus 275 ---~~~~~l~~~~~---~~~-~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~ 347 (526)
...+.+.+.+. ... .++.++....+.. .........+..+.............+.....++...+.+.+..
T Consensus 125 ~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~--~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 202 (350)
T 3h75_A 125 AGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTP--AAQLRERGLRRALAEHPQVHLRQLVYGEWNRERAYRQAQQLLKR 202 (350)
T ss_dssp HHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSH--HHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCH--HHHHHHHHHHHHHHHCCCeEEEEEeeCCCcHHHHHHHHHHHHHh
Confidence 22334444430 001 3555554221110 00001111222221111112233556777778888888888888
Q ss_pred CCCcEEEEEeCCccH----HHHHHHhcC--CCeEEecccChhh
Q 009759 348 LPEARIAFIGDGPYR----EELEKMFTG--MPAVFTGMLLGEE 384 (526)
Q Consensus 348 l~~~~l~ivG~g~~~----~~l~~l~~~--~~V~~~g~v~~~~ 384 (526)
.+++..+++.+.... ..+++.-.. ..|.+.|+=....
T Consensus 203 ~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~ 245 (350)
T 3h75_A 203 YPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPE 245 (350)
T ss_dssp CTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCHH
T ss_pred CCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCCHH
Confidence 888888888754322 222222212 1477888743333
No 78
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=85.15 E-value=21 Score=32.62 Aligned_cols=187 Identities=12% Similarity=-0.002 Sum_probs=94.4
Q ss_pred CCCcEEEEEeccCCC-CccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 116 SRPRRIALFVEPSPF-SYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 116 ~~~mkIliv~~~~p~-~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
.+..+|+++...... ....-....+..+.+++.+.|+++.++.... ... ..
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~--------------------------~~ 55 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP--GEK--------------------------YQ 55 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TCC--------------------------CH
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC--hhh--------------------------HH
Confidence 344689888752110 1111234556777888899999999987642 110 12
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
.+.+.+...++|-|++....... ..+......++|+|+.-+..... ..+.|.+-..
T Consensus 56 ~~~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----------------------~~~~V~~D~~ 111 (294)
T 3qk7_A 56 SLIHLVETRRVDALIVAHTQPED-FRLQYLQKQNFPFLALGRSHLPK-----------------------PYAWFDFDNH 111 (294)
T ss_dssp HHHHHHHHTCCSEEEECSCCSSC-HHHHHHHHTTCCEEEESCCCCSS-----------------------CCEEEEECHH
T ss_pred HHHHHHHcCCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEECCCCCCC-----------------------CCCEEEcChH
Confidence 45566667799988886532211 22333456789998754432110 1222322222
Q ss_pred h----HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcC-CCCCCcEEEEEecccccccHHHHHHHHHhCC
Q 009759 275 A----IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP 349 (526)
Q Consensus 275 ~----~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~ 349 (526)
. ..+.+.+.+ ..++.++....+.. .........+..+.. +.+-....+..+......+.+.+.+.+...+
T Consensus 112 ~~~~~a~~~L~~~G---~~~I~~i~~~~~~~--~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (294)
T 3qk7_A 112 AGASLAVKRLLELG---HQRIAFVSTDARIS--YVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEV 186 (294)
T ss_dssp HHHHHHHHHHHHTT---CCCEEEEEESSCCH--HHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHCC---CceEEEEeCCcccc--hHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCC
Confidence 1 223344433 24666654322110 000011111111111 1111122345567777778888888887767
Q ss_pred CcEEEEEeCC
Q 009759 350 EARIAFIGDG 359 (526)
Q Consensus 350 ~~~l~ivG~g 359 (526)
+...+++.+.
T Consensus 187 ~~~ai~~~nd 196 (294)
T 3qk7_A 187 PPTAIITDCN 196 (294)
T ss_dssp CCSEEEESSH
T ss_pred CCcEEEECCH
Confidence 7777777754
No 79
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=84.78 E-value=13 Score=29.40 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc---CcEEEecCCC-C-CCcHHHHHHHH--cCCcEEEe
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-E-TLGLVVLEAMS--SGIPVVGV 421 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~---aDv~v~ps~~-e-~~~~~ilEAma--~G~PvI~~ 421 (526)
..+++|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-... + .-|..+++.+. .++|+|.-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 35677777543 3445555555445555444455666666643 5888875543 3 45666666554 46788754
Q ss_pred C-CCC---CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 R-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 ~-~gg---~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
. ... ..+.+ +.|..+++..+.+.+++.++|..+++.
T Consensus 85 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 85 TAHTEPAVVEKIR---SVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp ESSSSCCCCGGGG---GSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---hCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 3 222 22334 568889999999999999999988753
No 80
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=84.44 E-value=1.4 Score=38.98 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=47.5
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+|||+++.+. .+..+..+++++.+ .+++|..+..+... .........+++.+.... ........+-.
T Consensus 10 ~~~~ri~vl~SG--------~gsnl~all~~~~~~~~~eI~~Vis~~~a-~~~~~A~~~gIp~~~~~~-~~~~~r~~~d~ 79 (215)
T 3da8_A 10 SAPARLVVLASG--------TGSLLRSLLDAAVGDYPARVVAVGVDREC-RAAEIAAEASVPVFTVRL-ADHPSRDAWDV 79 (215)
T ss_dssp CSSEEEEEEESS--------CCHHHHHHHHHSSTTCSEEEEEEEESSCC-HHHHHHHHTTCCEEECCG-GGSSSHHHHHH
T ss_pred CCCcEEEEEEeC--------ChHHHHHHHHHHhccCCCeEEEEEeCCch-HHHHHHHHcCCCEEEeCc-ccccchhhhhH
Confidence 456899998752 23556777777644 34578777766542 111111122222222211 11111112235
Q ss_pred HHHHHHHhcCCCEEEECCC
Q 009759 195 RIISEVARFKPDIIHASSP 213 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~ 213 (526)
.+.+.+++.+||+|++-.+
T Consensus 80 ~~~~~l~~~~~Dlivlagy 98 (215)
T 3da8_A 80 AITAATAAHEPDLVVSAGF 98 (215)
T ss_dssp HHHHHHHTTCCSEEEEEEC
T ss_pred HHHHHHHhhCCCEEEEcCc
Confidence 6788899999999998765
No 81
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=84.26 E-value=3.6 Score=38.72 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=45.9
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc----ccC------ceeccccccCCCcccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE----FYG------AKLIGSRSFPCPWYQK 185 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~ 185 (526)
.++|||+|+... .......++|.+.||+|..+.+....+.. ... ....+++.+....
T Consensus 5 ~~~mrivf~Gt~----------~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~--- 71 (318)
T 3q0i_A 5 SQSLRIVFAGTP----------DFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPEN--- 71 (318)
T ss_dssp --CCEEEEECCS----------HHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSC---
T ss_pred ccCCEEEEEecC----------HHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCc---
Confidence 357999988542 45667778888889999877765432110 000 0011122111110
Q ss_pred ccchhcccHHHHHHHHhcCCCEEEECCCc
Q 009759 186 VPLSLALSPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 186 ~~~~~~~~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
+ ....+.+.+++.+||++++..+.
T Consensus 72 ----~-~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 72 ----F-KSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp ----S-CSHHHHHHHHTTCCSEEEESSCC
T ss_pred ----C-CCHHHHHHHHhcCCCEEEEeCcc
Confidence 1 11367788999999999997753
No 82
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=83.32 E-value=4 Score=35.79 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=26.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|||++. ||.+..-..+++.|.+.|++|.++.....
T Consensus 1 M~ilIt---------GatG~iG~~l~~~L~~~g~~V~~~~R~~~ 35 (219)
T 3dqp_A 1 MKIFIV---------GSTGRVGKSLLKSLSTTDYQIYAGARKVE 35 (219)
T ss_dssp CEEEEE---------STTSHHHHHHHHHHTTSSCEEEEEESSGG
T ss_pred CeEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 788666 44445557789999999999999986543
No 83
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=83.23 E-value=3 Score=32.21 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=47.0
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.|||+++ |+ +..-..+++.|.+.| ++|.++..+......... .+.... .........+
T Consensus 5 ~~~v~I~---------G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~---~~~~~~--------~~d~~~~~~~ 63 (118)
T 3ic5_A 5 RWNICVV---------GA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR---MGVATK--------QVDAKDEAGL 63 (118)
T ss_dssp CEEEEEE---------CC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT---TTCEEE--------ECCTTCHHHH
T ss_pred cCeEEEE---------CC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh---CCCcEE--------EecCCCHHHH
Confidence 3678766 23 344567888899999 898887654321111100 000000 0111111233
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
.+.++ ++|+|+...+..........+...+++++
T Consensus 64 ~~~~~--~~d~vi~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 64 AKALG--GFDAVISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp HHHTT--TCSEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred HHHHc--CCCEEEECCCchhhHHHHHHHHHhCCCEE
Confidence 44443 78988877654444444444555666654
No 84
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=83.14 E-value=16 Score=32.76 Aligned_cols=183 Identities=8% Similarity=0.016 Sum_probs=91.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
.+|+++.... ...-.......+.+++.+.|+++.++....... ......+
T Consensus 3 ~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~~~~~ 52 (272)
T 3o74_A 3 RTLGFILPDL---ENPSYARIAKQLEQGARARGYQLLIASSDDQPD---------------------------SERQLQQ 52 (272)
T ss_dssp CEEEEEESCT---TCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHHHHHH
T ss_pred eEEEEEeCCC---cChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHH---------------------------HHHHHHH
Confidence 5788887532 112344566778888899999999886543210 0123444
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCChh---
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA--- 275 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~--- 275 (526)
.+...++|.|++..........+......++|+|+.-...... ..+.|.+-...
T Consensus 53 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----------------------~~~~V~~d~~~~~~ 109 (272)
T 3o74_A 53 LFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPA-----------------------HFCSVISDDRDASR 109 (272)
T ss_dssp HHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTT-----------------------TCEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCcc-----------------------ccCEEEEchHHHHH
Confidence 4555689988886532111112233456799998754332110 12223222222
Q ss_pred -HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCC-CcEE
Q 009759 276 -IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARI 353 (526)
Q Consensus 276 -~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~-~~~l 353 (526)
..+.+.+.+ ..++.++....+.. .........+..+.. ..-....+..+......+.+.+.+.+...+ +...
T Consensus 110 ~a~~~L~~~G---~~~i~~i~~~~~~~--~~~~R~~gf~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a 183 (272)
T 3o74_A 110 QLAASLLSSA---PRSIALIGARPELS--VSQARAGGFDEALQG-YTGEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDA 183 (272)
T ss_dssp HHHHHHHTTC---CSEEEEEEECTTSH--HHHHHHHHHHHHTTT-CCSEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSE
T ss_pred HHHHHHHHCC---CcEEEEEecCCCCc--cHHHHHHHHHHHHHH-cCCChheeecCCCCHHHHHHHHHHHHhcCCCCCcE
Confidence 223333333 24566554321110 000011111111211 111223445566677777777777777766 6777
Q ss_pred EEEeCCc
Q 009759 354 AFIGDGP 360 (526)
Q Consensus 354 ~ivG~g~ 360 (526)
+++.++.
T Consensus 184 i~~~~d~ 190 (272)
T 3o74_A 184 LVTTSYV 190 (272)
T ss_dssp EEESSHH
T ss_pred EEEeCch
Confidence 7777543
No 85
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=83.09 E-value=2.7 Score=38.67 Aligned_cols=33 Identities=6% Similarity=0.024 Sum_probs=24.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
+|||++. ||.+..-..+++.|.++||+|.++..
T Consensus 5 ~m~ilVt---------GatG~iG~~l~~~L~~~g~~V~~~~r 37 (287)
T 3sc6_A 5 KERVIIT---------GANGQLGKQLQEELNPEEYDIYPFDK 37 (287)
T ss_dssp CEEEEEE---------STTSHHHHHHHHHSCTTTEEEEEECT
T ss_pred eeEEEEE---------CCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 3677665 44445566788999999999998865
No 86
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=82.90 E-value=8.5 Score=30.60 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=66.9
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH----cCcEEEecCC-CCCCcHHHHHHHH---cCCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA----SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~----~aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~ 421 (526)
.+++|+.+.+ ..+.++......+..+...-+.++....+. ..|++|+-.. .+.-|..+++.+. ..+|+|..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 4667777543 344555555544444443444456666665 5688887544 3445666666554 36777654
Q ss_pred C-CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 422 R-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 422 ~-~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
. .... .+.+ +.|..+++..+.+.+++..+|..+++..
T Consensus 84 s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 84 TGHGDLDNAILAM---KEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp ECTTCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---HhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 3 3322 2334 6678899999999999999999987643
No 87
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=82.73 E-value=2.3 Score=34.08 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=33.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeE-EEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEV-MVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V-~vi~~~~~ 162 (526)
||++|+....|+ ..-.....+.++.++.+.||+| .|+...++
T Consensus 1 mk~~iiv~~~p~--~~~~~~~al~~a~a~~~~g~~v~~vff~~dG 43 (130)
T 2hy5_A 1 MKFALQINEGPY--QHQASDSAYQFAKAALEKGHEIFRVFFYHDG 43 (130)
T ss_dssp CEEEEEECSCTT--TSTHHHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred CEEEEEEeCCCC--CcHHHHHHHHHHHHHHhcCCeeCEEEEechH
Confidence 799999887554 2345567899999999999999 88877654
No 88
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=82.61 E-value=11 Score=33.09 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=26.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++. ||.+..-..+++.|.+.|++|.++....
T Consensus 5 ~~ilIt---------GatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 5 KKIVLI---------GASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp CEEEEE---------TCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CEEEEE---------cCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 677655 5556667789999999999999987654
No 89
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=82.49 E-value=3.3 Score=36.31 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=48.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
++||+++.. |.+.-+..+++++.+.+ ++|..+.++..........+..+++.+..+. ..+.....+-..
T Consensus 7 ~~ri~vl~S--------G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~-~~~~~r~~~d~~ 77 (209)
T 4ds3_A 7 RNRVVIFIS--------GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKR-KDFASKEAHEDA 77 (209)
T ss_dssp CEEEEEEES--------SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCG-GGSSSHHHHHHH
T ss_pred CccEEEEEE--------CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCc-cccCCHHHHHHH
Confidence 578988875 33356788888887643 6777777654322111111112222221111 000111112357
Q ss_pred HHHHHHhcCCCEEEECCCc
Q 009759 196 IISEVARFKPDIIHASSPG 214 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~ 214 (526)
+.+.+++.+||+|++-.+.
T Consensus 78 ~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 78 ILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp HHHHHHHHCCSEEEESSCC
T ss_pred HHHHHHhcCCCEEEEeccc
Confidence 7888999999999998753
No 90
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=82.28 E-value=1.5 Score=40.94 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++. ||.+..-..|++.|.++||+|++++.+.
T Consensus 1 MkILVT---------GatGfIG~~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVG---------GGTGFIGTALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 898655 5666677889999999999999997543
No 91
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=82.25 E-value=15 Score=28.86 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=65.7
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcEEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~ 420 (526)
..+++|+.+.+ ....++....+.+..+.-.-+.++..+.+.. .|++|+-.. .+.-|..+++.+.. .+|+|.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 34666666543 3344444444444333333333555555543 478877544 34556777777764 678876
Q ss_pred eCCCC----CC-ceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 421 VRAGG----IP-DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 421 ~~~gg----~~-e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
-.... .. +.+ +.|..+++..+.+.+++.++|..+++.
T Consensus 86 ~s~~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 86 VSANAREGELEFNSQ---PLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp ECTTHHHHHHHHCCT---TTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhh---hcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 54322 11 334 667889999999999999999988763
No 92
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=82.20 E-value=27 Score=31.95 Aligned_cols=221 Identities=10% Similarity=0.012 Sum_probs=107.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
++.+|+++.... ...-.......+-+++.+.|+++.++........ .....
T Consensus 3 ~~~~I~~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~--------------------------~~~~~ 53 (305)
T 3g1w_A 3 LNETYMMITFQS---GMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQ--------------------------EQITV 53 (305)
T ss_dssp --CEEEEEESST---TSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHH--------------------------HHHHH
T ss_pred CCceEEEEEccC---CChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHH--------------------------HHHHH
Confidence 456898887642 2223445567788888889999998643221100 01133
Q ss_pred HHHHHhcCCCEEEECCCchH-HHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh-
Q 009759 197 ISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV- 274 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~- 274 (526)
.+.+...++|.|++...... ....+......++|+|+.-...... ...+.|.+...
T Consensus 54 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~----------------------~~~~~V~~d~~~ 111 (305)
T 3g1w_A 54 LEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS----------------------HAHSFLGTNNYN 111 (305)
T ss_dssp HHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS----------------------CCSCEEECCHHH
T ss_pred HHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC----------------------ceeEEECcCHHH
Confidence 34444569998888653322 1222333456799988754332110 01222222222
Q ss_pred ---hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhc-CCCCCCcEEEEEecccccccHHHHHHHHHhCCC
Q 009759 275 ---AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPE 350 (526)
Q Consensus 275 ---~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~ 350 (526)
...+.+.+..+ ...++.++. |-. ...........+..+. ....-....++.|......+...+.+.+...++
T Consensus 112 ~g~~~~~~l~~~~~-g~~~i~~i~-~~~--~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (305)
T 3g1w_A 112 AGMNAAYKMAELLD-GEGEVAVIT-LPN--QLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPN 187 (305)
T ss_dssp HHHHHHHHHHHHTT-TCEEEEEEE-CTT--CHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhC-CCcEEEEEe-CCC--cccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 22233444311 124566654 221 1000001111111111 011222334456777778888888888888888
Q ss_pred cEEEEEeCCccH----HHHHHHhcCCCeEEecccChhhHHHHHHcC
Q 009759 351 ARIAFIGDGPYR----EELEKMFTGMPAVFTGMLLGEELSQAYASG 392 (526)
Q Consensus 351 ~~l~ivG~g~~~----~~l~~l~~~~~V~~~g~v~~~~l~~~~~~a 392 (526)
+..+++.++... ..+++.-....|.+.|+=...+....+..-
T Consensus 188 ~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~~~~~~~~~~ 233 (305)
T 3g1w_A 188 LAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEG 233 (305)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHTT
T ss_pred ceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcC
Confidence 888887754322 222222212257888874434444555433
No 93
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=81.81 E-value=9.6 Score=34.86 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=53.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++... ....-....+..+-+++.+.|+++.++....... ...
T Consensus 5 ~~~~~~Igvv~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~ 54 (291)
T 3egc_A 5 SKRSNVVGLIVSD---IENVFFAEVASGVESEARHKGYSVLLANTAEDIV---------------------------RER 54 (291)
T ss_dssp --CCCEEEEEESC---TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHH
T ss_pred cCCCcEEEEEECC---CcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHH---------------------------HHH
Confidence 3445689998753 1222244556778888899999999886543210 012
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
.+.+.+...++|.|++...... ...+......++|+|+.-.
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 55 EAVGQFFERRVDGLILAPSEGE-HDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHTTCSEEEECCCSSC-CHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHCCCCEEEEeCCCCC-hHHHHHhhccCCCEEEEec
Confidence 3445556668999888654321 1122233456899987543
No 94
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=81.64 E-value=5.7 Score=37.62 Aligned_cols=86 Identities=16% Similarity=0.054 Sum_probs=47.3
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccC----ceeccccccCCCccccccchhc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYG----AKLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 191 (526)
.++|||+|+. .......+.++|.+.||+|..+.+.+........ ....+++.+..... ...-.
T Consensus 20 ~~~mrIvf~G----------~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~---~~~~~ 86 (329)
T 2bw0_A 20 FQSMKIAVIG----------QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRW---RAKGQ 86 (329)
T ss_dssp -CCCEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCC---EETTE
T ss_pred CCCCEEEEEc----------CcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcc---ccccc
Confidence 3459998883 2355556788898999999877664322111000 01112222211111 11112
Q ss_pred ccHHHHHHHHhcCCCEEEECCCc
Q 009759 192 LSPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
....+.+.+++.+||++++-.+.
T Consensus 87 ~~~~~~~~l~~~~~Dliv~a~y~ 109 (329)
T 2bw0_A 87 ALPDVVAKYQALGAELNVLPFCS 109 (329)
T ss_dssp ECHHHHHHHHTTCCSEEEESSCS
T ss_pred ccHHHHHHHHhcCCCEEEEeehh
Confidence 23567788899999999987753
No 95
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=81.63 E-value=4.5 Score=35.57 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=47.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||+++... +| ..+..+++++.+. +++|..+.++.............+++.+.... ..+...-.+-..+
T Consensus 1 ~ri~vl~Sg------~g--snl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~-~~~~~r~~~~~~~ 71 (212)
T 1jkx_A 1 MNIVVLISG------NG--SNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIA-SAFDSREAYDREL 71 (212)
T ss_dssp CEEEEEESS------CC--HHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCG-GGCSSHHHHHHHH
T ss_pred CEEEEEEEC------Cc--HHHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCc-ccccchhhccHHH
Confidence 689888752 22 3577888888765 57887777654322111111112222221110 0000111123467
Q ss_pred HHHHHhcCCCEEEECCCc
Q 009759 197 ISEVARFKPDIIHASSPG 214 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~ 214 (526)
.+.+++.+||+|++..+.
T Consensus 72 ~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 72 IHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHGGGCCSEEEESSCC
T ss_pred HHHHHhcCCCEEEEeChh
Confidence 888999999999998753
No 96
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=81.54 E-value=18 Score=30.28 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=56.8
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCc-eeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGA-KLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
++|||+++.++ . ...++++..-+ .+-+|+++..+....... +. +++.+. . .. ..-.+...
T Consensus 2 ~~M~vlV~~E~---~------~~~~Ell~~ar-~~g~v~av~~G~~~~~~~-Gad~v~~v~--~----~~--~~e~~a~~ 62 (166)
T 3fet_A 2 NAMKFLTVSDD---M------NFLRQVNTLVA-GKGDMDSVIIGEGDAKGL-GSKVLYRAK--K----GT--PFDAVSEG 62 (166)
T ss_dssp CSEEEEEEESS---H------HHHHHHHHHHG-GGEEEEEEEESCCCCTTC-CCSEEEEEC--T----TC--CHHHHHHH
T ss_pred CccEEEEEEcC---c------cHHHHHHHhhc-cCCcEEEEEECcchHHHc-CCCEEEEeC--C----CC--ChHHHHHH
Confidence 46999999874 1 23455554433 334788887665422222 22 121111 1 11 11233345
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
+.++++ +||+|++.......-.+-.++.+++.+.+.++-+.
T Consensus 63 l~~~~~--~p~~Vl~g~t~~g~~vaprlAa~L~~~~~sdv~~l 103 (166)
T 3fet_A 63 ILKIAG--NYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFSL 103 (166)
T ss_dssp HHHHHT--TCSEEEEECSHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHc--CCCEEEEcCCCccccHHHHHHHHhCCCceeeEEEE
Confidence 555565 99999997654333335557788999998887653
No 97
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=80.94 E-value=21 Score=33.40 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... .....-....+..+.+++.+.|+++.++....... ...
T Consensus 58 ~~~~~~Igvi~~~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~ 109 (338)
T 3dbi_A 58 AKSTQTLGLVVTNT-LYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAE---------------------------EER 109 (338)
T ss_dssp --CCSEEEEEECTT-TTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHH---------------------------HHH
T ss_pred hCCCCEEEEEecCC-cccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChH---------------------------HHH
Confidence 44556898887531 01122345567788888999999998876433210 011
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
...+.+...++|-|++.......-.........++|+|+.-.
T Consensus 110 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 110 QAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcC
Confidence 334455556899888865332222223334566899887543
No 98
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=80.70 E-value=3.5 Score=33.41 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=30.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
.||++++..+ |..--....+..++..|.++||+|+|.+.
T Consensus 6 ~m~~LilLGC---PE~Pvq~p~~lYl~~~Lk~~G~~v~VA~n 44 (157)
T 1kjn_A 6 TGKALMVLGC---PESPVQIPLAIYTSHKLKKKGFRVTVTAN 44 (157)
T ss_dssp CCEEEEECCC---SCSTTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ceeeeEEecC---CCCcchhhHHHHHHHHHHhcCCeeEEecC
Confidence 4999999765 33344556678899999999999999875
No 99
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=79.80 E-value=9.8 Score=30.99 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=60.4
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEec-ccChhhHHHHHH----cCcEEEecCC-CCCCcHHHHHHHH---cCCcEEE
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTG-MLLGEELSQAYA----SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVG 420 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g-~v~~~~l~~~~~----~aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~ 420 (526)
.+++|+.+.+ ..+.++.+..+.++.+.+ .-+.++....+. ..|++|+-.. .+.-|..+++.+. ..+|||.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ 116 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIM 116 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEE
Confidence 4555555432 233344444433444332 223345544444 3488887544 2444666666554 3677765
Q ss_pred eCC-CCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 421 VRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 421 ~~~-gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
... ... .+.+ +.|..+++..+.+.+++.++|..++.
T Consensus 117 ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 117 ISALGKEQLVKDCL---IKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EESCCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EeccCcHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 433 222 2233 56788999999999999999988764
No 100
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=79.75 E-value=21 Score=32.78 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=52.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... ...-....+..+.+++.+.|+++.++........ ..
T Consensus 12 ~~~s~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---------------------------~~ 61 (303)
T 3kke_A 12 HSRSGTIGLIVPDV---NNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRG---------------------------TQ 61 (303)
T ss_dssp -----CEEEEESCT---TSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHH---------------------------HH
T ss_pred hCCCCEEEEEeCCC---cChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHH---------------------------HH
Confidence 34456798887532 2223456677888899999999998765432110 12
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.+.+.+...++|-|++.......-..+..... ++|+|+.-..
T Consensus 62 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~~~ 103 (303)
T 3kke_A 62 QLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE-GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT-TSCEEEESCC
T ss_pred HHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC-CCCEEEECCc
Confidence 44555666789988886532221101222334 9998875443
No 101
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=79.38 E-value=8.3 Score=36.19 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=45.2
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc----ccCc------eeccccccCCCccccc
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE----FYGA------KLIGSRSFPCPWYQKV 186 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~----~~~~------~~~~~~~~~~~~~~~~ 186 (526)
++|||+|+... .......++|.+.||+|..+.+.+..+.. .... ...+++.+....
T Consensus 1 ~~mrivf~Gtp----------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~---- 66 (314)
T 3tqq_A 1 MSLKIVFAGTP----------QFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFS---- 66 (314)
T ss_dssp CCCEEEEEECS----------GGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSC----
T ss_pred CCcEEEEECCC----------HHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECccc----
Confidence 35999999652 33456678888899999887765432210 0000 011112111110
Q ss_pred cchhcccHHHHHHHHhcCCCEEEECCCc
Q 009759 187 PLSLALSPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 187 ~~~~~~~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
+ ....+.+.+++.+||++++..+.
T Consensus 67 ---~-~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 67 ---L-RDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp ---S-SSHHHHHHHHTTCCSEEEEESCC
T ss_pred ---C-CCHHHHHHHHhcCCCEEEEcCcc
Confidence 0 11367788999999999997653
No 102
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=79.17 E-value=8.2 Score=36.25 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=44.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc----cC------ceeccccccCCCcccccc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF----YG------AKLIGSRSFPCPWYQKVP 187 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~ 187 (526)
.|||+|+... .......++|.+.||+|..+.+........ .. ....+++.+... .
T Consensus 4 mmrIvf~Gtp----------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~---~-- 68 (317)
T 3rfo_A 4 MIKVVFMGTP----------DFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPL---R-- 68 (317)
T ss_dssp TSEEEEECCS----------TTHHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCS---C--
T ss_pred ceEEEEEeCC----------HHHHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEccc---c--
Confidence 4899998652 334566788888899998887654322110 00 001112211110 0
Q ss_pred chhcccHHHHHHHHhcCCCEEEECCCc
Q 009759 188 LSLALSPRIISEVARFKPDIIHASSPG 214 (526)
Q Consensus 188 ~~~~~~~~l~~~l~~~~pDiV~~~~~~ 214 (526)
+. .....+.+++.+||++++..+.
T Consensus 69 --~~-~~~~~~~l~~~~~Dliv~~~y~ 92 (317)
T 3rfo_A 69 --IR-EKDEYEKVLALEPDLIVTAAFG 92 (317)
T ss_dssp --TT-SHHHHHHHHHHCCSEEEESSCC
T ss_pred --CC-CHHHHHHHHhcCCCEEEEcCch
Confidence 10 1245677888999999998753
No 103
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=79.14 E-value=5.1 Score=38.86 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=46.8
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
+..++|||+++.. | .....++++++++|++|.++............... +..+. .-.
T Consensus 7 m~~~~~~ili~g~--------g--~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~-----~~~~~--------~d~ 63 (391)
T 1kjq_A 7 LRPAATRVMLLGS--------G--ELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRS-----HVINM--------LDG 63 (391)
T ss_dssp TSTTCCEEEEESC--------S--HHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEE-----EECCT--------TCH
T ss_pred CCCCCCEEEEECC--------C--HHHHHHHHHHHHcCCEEEEEECCCCCchhhhccce-----EECCC--------CCH
Confidence 4556689988832 2 24577899999999999888765432211110011 11111 112
Q ss_pred HHHHHHHHhcCCCEEEECCC
Q 009759 194 PRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~ 213 (526)
..+.+++++.++|+|+....
T Consensus 64 ~~l~~~~~~~~~d~v~~~~e 83 (391)
T 1kjq_A 64 DALRRVVELEKPHYIVPEIE 83 (391)
T ss_dssp HHHHHHHHHHCCSEEEECSS
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 46777788889999998653
No 104
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=78.96 E-value=3.1 Score=38.36 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeC
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~ 160 (526)
...+.||||+|..+ | ..++.... ....++.|.+.||+|+++-..
T Consensus 18 ~~m~~MKiLII~aH-P--~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 18 LYFQSMKVLLIYAH-P--EPRSLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp ----CCEEEEEECC-S--CTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred chhhCCeEEEEEeC-C--CCccHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 44667999999764 3 34454433 566788999999999998653
No 105
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=78.94 E-value=15 Score=33.97 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=48.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCC-CccccCceeccccccCCCccccccchhcc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGV-PQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
.++|||+++.+. .| .-+..|+.+.+.- ..+|.++..+... .... .+..+++.+..+... .....+
T Consensus 86 ~~~~ri~vl~Sg------~g--~nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~--A~~~gIp~~~~~~~~--~~r~~~ 153 (287)
T 3nrb_A 86 TDRKKVVIMVSK------FD--HCLGDLLYRHRLGELDMEVVGIISNHPREALSV--SLVGDIPFHYLPVTP--ATKAAQ 153 (287)
T ss_dssp TCCCEEEEEECS------CC--HHHHHHHHHHHHTSSCCEEEEEEESSCGGGCCC--CCCTTSCEEECCCCG--GGHHHH
T ss_pred CCCcEEEEEEeC------CC--cCHHHHHHHHHCCCCCeEEEEEEeCChHHHHHH--HHHcCCCEEEEeccC--cchhhH
Confidence 346899998752 22 4566777776653 4677777776543 1111 122233322222111 111222
Q ss_pred cHHHHHHHHhcCCCEEEECCC
Q 009759 193 SPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~ 213 (526)
-..+.+.+++.++|+|++-.+
T Consensus 154 ~~~~~~~l~~~~~Dlivlagy 174 (287)
T 3nrb_A 154 ESQIKNIVTQSQADLIVLARY 174 (287)
T ss_dssp HHHHHHHHHHHTCSEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEhhhh
Confidence 346788899999999999775
No 106
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=78.89 E-value=9.8 Score=30.86 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=46.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+++||+++.+. ......+.+.|.+.|++|..+... .
T Consensus 4 ~~~~~~ILivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~ 41 (154)
T 3gt7_A 4 SNRAGEILIVEDS---------PTQAEHLKHILEETGYQTEHVRNG---------------------------------R 41 (154)
T ss_dssp ---CCEEEEECSC---------HHHHHHHHHHHHTTTCEEEEESSH---------------------------------H
T ss_pred ccCCCcEEEEeCC---------HHHHHHHHHHHHHCCCEEEEeCCH---------------------------------H
Confidence 3456899888653 245667778888889987654211 2
Q ss_pred HHHHHHHhcCCCEEEECC--CchHHHHHHH-HHHh---cCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASS--PGIMVFGALI-IAKL---LCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~--~~~~~~~~~~-~~~~---~~~p~v~~~h 236 (526)
...+.+++.+||+|++.. +...++..+. +... ..+|+|+...
T Consensus 42 ~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 42 EAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp HHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEEC
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEEC
Confidence 455566777899999964 2222222222 2222 4678776543
No 107
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=78.36 E-value=13 Score=36.94 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=56.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+|++++.+ ......+++.|.+.|.+|..+....... .+..... .... ..-...+.
T Consensus 313 Gkrv~i~~~----------~~~~~~l~~~L~elGm~vv~~~~~~~~~-~~~~~~~-----------~~v~--~~D~~~le 368 (458)
T 3pdi_B 313 SARTAIAAD----------PDLLLGFDALLRSMGAHTVAAVVPARAA-ALVDSPL-----------PSVR--VGDLEDLE 368 (458)
T ss_dssp TCEEEEECC----------HHHHHHHHHHHHTTTCEEEEEEESSCCS-CCTTTTS-----------SCEE--ESHHHHHH
T ss_pred CCEEEEECC----------cHHHHHHHHHHHHCCCEEEEEEECCCCh-hhhhCcc-----------CcEE--eCCHHHHH
Confidence 358877643 3678999999999999999887655321 1111100 0000 11223577
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.+||+++.+... ..++++.++|++.
T Consensus 369 ~~i~~~~pDllig~~~~------~~~a~k~gip~~~ 398 (458)
T 3pdi_B 369 HAARAGQAQLVIGNSHA------LASARRLGVPLLR 398 (458)
T ss_dssp HHHHHHTCSEEEECTTH------HHHHHHTTCCEEE
T ss_pred HHHHhcCCCEEEEChhH------HHHHHHcCCCEEE
Confidence 88888999999998752 3456789999874
No 108
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=78.29 E-value=20 Score=28.10 Aligned_cols=35 Identities=17% Similarity=-0.055 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
.....+||+++.+. ......+.+.|.+.|++|..+
T Consensus 14 ~~~~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~ 48 (137)
T 2pln_A 14 VPRGSMRVLLIEKN---------SVLGGEIEKGLNVKGFMADVT 48 (137)
T ss_dssp -CTTCSEEEEECSC---------HHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCeEEEEeCC---------HHHHHHHHHHHHHcCcEEEEe
Confidence 35566899888653 245567778888889988744
No 109
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=78.27 E-value=14 Score=29.72 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=37.8
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
+.+++||+++.+. ......+.+.|.+.|++|..+... .
T Consensus 11 ~~~~~~ILivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~ 48 (153)
T 3hv2_A 11 VTRRPEILLVDSQ---------EVILQRLQQLLSPLPYTLHFARDA---------------------------------T 48 (153)
T ss_dssp CCSCCEEEEECSC---------HHHHHHHHHHHTTSSCEEEEESSH---------------------------------H
T ss_pred ccCCceEEEECCC---------HHHHHHHHHHhcccCcEEEEECCH---------------------------------H
Confidence 4556799888653 245566778888889887754221 2
Q ss_pred HHHHHHHhcCCCEEEECC
Q 009759 195 RIISEVARFKPDIIHASS 212 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~ 212 (526)
.....+.+..||+|++..
T Consensus 49 ~a~~~l~~~~~dlvi~D~ 66 (153)
T 3hv2_A 49 QALQLLASREVDLVISAA 66 (153)
T ss_dssp HHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHcCCCCEEEEeC
Confidence 455566777899999854
No 110
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=78.22 E-value=4.4 Score=35.55 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=45.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||+++.+. .+..+..|++.+++. +++|..+.++.............+++.+.... ........+-..+
T Consensus 1 ~riaVl~SG--------~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~-~~~~~r~~~~~~~ 71 (209)
T 1meo_A 1 ARVAVLISG--------TGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINH-KLYKNRVEFDSAI 71 (209)
T ss_dssp CEEEEEESS--------SCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCG-GGSSSHHHHHHHH
T ss_pred CeEEEEEEC--------CchHHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECc-cccCchhhhhHHH
Confidence 588888752 224466677776654 78988887765432211111112222211110 0001111122467
Q ss_pred HHHHHhcCCCEEEECCC
Q 009759 197 ISEVARFKPDIIHASSP 213 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~ 213 (526)
.+.+++.+||+|++-.+
T Consensus 72 ~~~l~~~~~Dliv~a~y 88 (209)
T 1meo_A 72 DLVLEEFSIDIVCLAGF 88 (209)
T ss_dssp HHHHHHTTCCEEEEESC
T ss_pred HHHHHhcCCCEEEEcch
Confidence 78889999999998765
No 111
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=78.03 E-value=19 Score=27.79 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=46.1
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+++||+++.+. ......+.+.|.+.|++|..... ...
T Consensus 5 ~~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~---------------------------------~~~ 42 (130)
T 3eod_A 5 LVGKQILIVEDE---------QVFRSLLDSWFSSLGATTVLAAD---------------------------------GVD 42 (130)
T ss_dssp TTTCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESC---------------------------------HHH
T ss_pred CCCCeEEEEeCC---------HHHHHHHHHHHHhCCceEEEeCC---------------------------------HHH
Confidence 345799888653 24556777888889998875321 124
Q ss_pred HHHHHHhcCCCEEEECCC--chHHH--HHHHHHHhcCCCEEEEEe
Q 009759 196 IISEVARFKPDIIHASSP--GIMVF--GALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~--~~~~~--~~~~~~~~~~~p~v~~~h 236 (526)
..+.+.+.+||+|++... ...++ ...+......+|+|+...
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~ 87 (130)
T 3eod_A 43 ALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISA 87 (130)
T ss_dssp HHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 455667778999999642 11112 122222334677766543
No 112
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=77.98 E-value=10 Score=34.91 Aligned_cols=114 Identities=9% Similarity=0.083 Sum_probs=59.6
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..+++||+++.+. .| .-+..|+.+.++- ..+|..+..+....... .+..+++.+..+... .....+
T Consensus 87 ~~~~~ri~vl~Sg------~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~--A~~~gIp~~~~~~~~--~~r~~~ 154 (286)
T 3n0v_A 87 PNHRPKVVIMVSK------AD--HCLNDLLYRQRIGQLGMDVVAVVSNHPDLEPL--AHWHKIPYYHFALDP--KDKPGQ 154 (286)
T ss_dssp TTCCCEEEEEESS------CC--HHHHHHHHHHHTTSSCCEEEEEEESSSTTHHH--HHHTTCCEEECCCBT--TBHHHH
T ss_pred CCCCcEEEEEEeC------CC--CCHHHHHHHHHCCCCCcEEEEEEeCcHHHHHH--HHHcCCCEEEeCCCc--CCHHHH
Confidence 3456899998752 22 4566777766543 46888877766433222 122222222222111 111122
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY 242 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~ 242 (526)
-..+.+.+++.++|+|++-.+....-..+ + ....-+++-.-+...|.+
T Consensus 155 ~~~~~~~l~~~~~Dlivla~y~~il~~~~-l-~~~~~~~iNiHpSlLP~~ 202 (286)
T 3n0v_A 155 ERKVLQVIEETGAELVILARYMQVLSPEL-C-RRLDGWAINIHHSLLPGF 202 (286)
T ss_dssp HHHHHHHHHHHTCSEEEESSCCSCCCHHH-H-HHTTTSEEEEEECSSTTC
T ss_pred HHHHHHHHHhcCCCEEEecccccccCHHH-H-hhhcCCeEEeccccccCC
Confidence 34678889999999999987532221112 2 223335554444445544
No 113
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=77.89 E-value=17 Score=27.87 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=62.7
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH-----cCCcEEEe-
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV- 421 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma-----~G~PvI~~- 421 (526)
++.++.+.+ ....+.......+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+. .+.|+|..
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 455555543 2334444444334444333344555555544 488877544 3445677777774 35787654
Q ss_pred CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 422 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
..+.........+.|..+++..+.+.+++.++|.++++
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 33322221111156788999999999999999988764
No 114
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=77.74 E-value=16 Score=33.28 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=27.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.|+||+|..+ | +=....+-.++..+.+.|++|.+++...+
T Consensus 7 ~~rvLvv~aH-P----DDe~l~~GGtia~~~~~G~~V~vv~~T~G 46 (270)
T 3dfi_A 7 RTRILAISPH-L----DDAVLSVGASLAQAEQDGGKVTVFTVFAG 46 (270)
T ss_dssp CSEEEEEESS-T----THHHHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEEeC-C----chHHHhhHHHHHHHHhCCCeEEEEEEeCC
Confidence 4799988764 3 23333444566667788999999986554
No 115
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=77.45 E-value=5 Score=34.57 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=23.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.+|||++. ||.+..-..+++.|. +|++|.++...
T Consensus 2 ~kM~vlVt---------Gasg~iG~~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 2 NAMKILLI---------GASGTLGSAVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp CSCEEEEE---------TTTSHHHHHHHHHHT-TTSEEEEEESS
T ss_pred CCcEEEEE---------cCCcHHHHHHHHHHH-CCCeEEEEecC
Confidence 35787555 344445567888888 89999988654
No 116
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=77.14 E-value=16 Score=28.71 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=36.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.++||+++.+. ......+.+.|.+.|++|..+... ...
T Consensus 5 ~~~~iLivdd~---------~~~~~~l~~~l~~~g~~v~~~~~~---------------------------------~~a 42 (140)
T 3grc_A 5 PRPRILICEDD---------PDIARLLNLMLEKGGFDSDMVHSA---------------------------------AQA 42 (140)
T ss_dssp CCSEEEEECSC---------HHHHHHHHHHHHHTTCEEEEECSH---------------------------------HHH
T ss_pred CCCCEEEEcCC---------HHHHHHHHHHHHHCCCeEEEECCH---------------------------------HHH
Confidence 45799888653 245566778888899987554211 245
Q ss_pred HHHHHhcCCCEEEECC
Q 009759 197 ISEVARFKPDIIHASS 212 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~ 212 (526)
.+.+++.+||+|++..
T Consensus 43 ~~~l~~~~~dlvi~d~ 58 (140)
T 3grc_A 43 LEQVARRPYAAMTVDL 58 (140)
T ss_dssp HHHHHHSCCSEEEECS
T ss_pred HHHHHhCCCCEEEEeC
Confidence 5666777999999964
No 117
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=76.84 E-value=10 Score=34.09 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=47.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc-----------cCceeccccc-cCCCcc-c
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF-----------YGAKLIGSRS-FPCPWY-Q 184 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~-~ 184 (526)
+++|++|..+ | +=....+-..+..+.+.|++|.+++...+..... ......++.. ..+.+. .
T Consensus 3 ~~~vL~v~aH-P----DDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv~~~~~L~~~D~ 77 (242)
T 2ixd_A 3 GLHILAFGAH-A----DDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDR 77 (242)
T ss_dssp CCSEEEEESS-T----THHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTT
T ss_pred CccEEEEEeC-C----ChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCCCeEEECCCCCC
Confidence 3688888754 3 2223334445566677899999987654432110 0001112111 000000 0
Q ss_pred cccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 185 KVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 185 ~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
.+.........+.+++++.+||+|+.+++
T Consensus 78 ~~~~~~~~~~~l~~~ir~~~PdvV~t~~~ 106 (242)
T 2ixd_A 78 GLYMKEEYIREIVKVIRTYKPKLVFAPYY 106 (242)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCSEEEEECS
T ss_pred CCCChHHHHHHHHHHHHHcCCCEEEECCC
Confidence 01112334567888889999999999754
No 118
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=76.71 E-value=24 Score=27.29 Aligned_cols=109 Identities=21% Similarity=0.174 Sum_probs=63.3
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~~ 421 (526)
.++.|+.+.+ ....++.+.. .+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+.. ++|+|..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 4566666543 3344455444 33333333334555555543 578777544 34456677776654 6787654
Q ss_pred CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
....-.+.......|..+++..+.+.+++.++|..+++.
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 84 SGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp ESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 322111112112667788999999999999999998864
No 119
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=76.67 E-value=12 Score=29.86 Aligned_cols=107 Identities=10% Similarity=0.119 Sum_probs=65.7
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcEEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~ 420 (526)
..+++|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+.. ++|||.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 45677777543 3445555444444444433333555555443 688887544 34456777887764 577765
Q ss_pred e-CCCCCC---ceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 421 V-RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 421 ~-~~gg~~---e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
. ...... +.+ +.|..+++..+.+.+++..+|..++.
T Consensus 88 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 88 LSGRATAKEEAQLL---DMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp EESSCCHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHH---hCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4 333221 223 45778999999999999999988875
No 120
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=76.49 E-value=23 Score=32.21 Aligned_cols=95 Identities=9% Similarity=0.003 Sum_probs=53.8
Q ss_pred CCCCcEEEEEeccCCC--CccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 115 NSRPRRIALFVEPSPF--SYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~--~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..+..+|+++...... ....-.......+.+++.+.|+++.++...... ..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---------------------------~~ 57 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEE---------------------------EI 57 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHH---------------------------HH
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCH---------------------------HH
Confidence 3455689998653000 111234456677888889999998875432210 01
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
...+.+.+...++|.|++....... ..+......++|+|+.-..
T Consensus 58 ~~~~~~~~~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~ 101 (292)
T 3k4h_A 58 FNGVVKMVQGRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHTTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCC
Confidence 1245566666799998886543221 1233345679999875433
No 121
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=76.42 E-value=22 Score=28.13 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=47.2
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+++||+++.+. ......+.+.|.+.|+.+.+...... ...
T Consensus 4 ~~~~ILivdd~---------~~~~~~l~~~L~~~~~~~~v~~~~~~-------------------------------~~a 43 (144)
T 3kht_A 4 RSKRVLVVEDN---------PDDIALIRRVLDRKDIHCQLEFVDNG-------------------------------AKA 43 (144)
T ss_dssp -CEEEEEECCC---------HHHHHHHHHHHHHTTCCEEEEEESSH-------------------------------HHH
T ss_pred CCCEEEEEeCC---------HHHHHHHHHHHHhcCCCeeEEEECCH-------------------------------HHH
Confidence 45799888653 24566788888999998555443321 245
Q ss_pred HHHHHhcCCCEEEECCC--chHHHHHHHHHH----hcCCCEEEEEe
Q 009759 197 ISEVARFKPDIIHASSP--GIMVFGALIIAK----LLCVPIVMSYH 236 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~--~~~~~~~~~~~~----~~~~p~v~~~h 236 (526)
.+.+.+.+||+|++... ...++..+...+ ..++|+|+...
T Consensus 44 ~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 44 LYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeC
Confidence 55666778999999653 222222222122 24677776543
No 122
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=76.31 E-value=15 Score=28.82 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=40.3
Q ss_pred CcEEEecCCCCCCcHHHHHHHH--c-CCcEEEe-CCCCC---CceecccCCCceeEeeCCC-CHHHHHHHHHHhhhC
Q 009759 392 GDVFVMPSESETLGLVVLEAMS--S-GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 460 (526)
Q Consensus 392 aDv~v~ps~~e~~~~~ilEAma--~-G~PvI~~-~~gg~---~e~v~~~~~~~~g~~~~~~-d~~~la~ai~~ll~d 460 (526)
.|++|+| +.-|..+++.+. . ++|||.. ..... .+.+ +.|..+++..+. +.+++..+|..++..
T Consensus 63 ~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 63 YDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAF---EQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp CSEEEEC---STTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHH---HTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCEEEEc---CccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHH---HcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 4777722 233555555554 3 6777654 33322 2233 567789999999 999999999988753
No 123
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=76.14 E-value=23 Score=31.19 Aligned_cols=139 Identities=9% Similarity=0.004 Sum_probs=70.5
Q ss_pred CcEEEEEeCCccHHHHHHHhcCCCeEEec-ccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCCc
Q 009759 350 EARIAFIGDGPYREELEKMFTGMPAVFTG-MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 428 (526)
Q Consensus 350 ~~~l~ivG~g~~~~~l~~l~~~~~V~~~g-~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~e 428 (526)
+..++++... ..++++.+....++.+.. ....++ +..+|++|.....+.....+.++...|+||-+.+.+...+
T Consensus 54 GA~VtVvap~-~~~~l~~l~~~~~i~~i~~~~~~~d----L~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p~~~~ 128 (223)
T 3dfz_A 54 GAAITVVAPT-VSAEINEWEAKGQLRVKRKKVGEED----LLNVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSFSDGN 128 (223)
T ss_dssp CCCEEEECSS-CCHHHHHHHHTTSCEEECSCCCGGG----SSSCSEEEECCCCTHHHHHHHHHSCTTCEEEC-----CCS
T ss_pred CCEEEEECCC-CCHHHHHHHHcCCcEEEECCCCHhH----hCCCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCcccCe
Confidence 5677777643 345677777766666543 333333 5679999877655555555666656899998888877666
Q ss_pred eeccc--CCCceeEeeC-CCCHHHHHHHH----HHhhhC-HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 009759 429 IIPED--QDGKIGYLFN-PGDLDDCLSKL----EPLLYN-QELRETMGQAARQEME-KYDWRAATRTIRNEQYN 493 (526)
Q Consensus 429 ~v~~~--~~~~~g~~~~-~~d~~~la~ai----~~ll~d-~~~~~~~~~~a~~~~~-~fs~~~~~~~~~~~ly~ 493 (526)
++.+- +.+.--+-+. .+..-.++..| +.++-. -..+-++....|+.++ .+.-...-+++++.+++
T Consensus 129 f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~~~~~~~~Rr~~~~~~~~ 202 (223)
T 3dfz_A 129 IQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHRLNVSKSRKHELLTEIID 202 (223)
T ss_dssp EECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHTCS
T ss_pred EEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 65321 2222222222 23333444444 444422 2233333444555563 44433334444444443
No 124
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=76.12 E-value=14 Score=29.66 Aligned_cols=127 Identities=13% Similarity=-0.030 Sum_probs=65.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+.+|+++. .+..-..+++.|.+.|++|+++..+........ ..+...+.... ......
T Consensus 7 ~~~viIiG----------~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~---~~g~~~i~gd~---------~~~~~l 64 (140)
T 3fwz_A 7 CNHALLVG----------YGRVGSLLGEKLLASDIPLVVIETSRTRVDELR---ERGVRAVLGNA---------ANEEIM 64 (140)
T ss_dssp CSCEEEEC----------CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH---HTTCEEEESCT---------TSHHHH
T ss_pred CCCEEEEC----------cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH---HcCCCEEECCC---------CCHHHH
Confidence 35787762 346778899999999999999986543211110 00111110000 011222
Q ss_pred HHHHhcCCCEEEECCCchH--HHHHHHHHHh-cCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 198 SEVARFKPDIIHASSPGIM--VFGALIIAKL-LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~--~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
+...-.+.|+|++..+... ......+++. .+++++...++.. .........+|.++.+..
T Consensus 65 ~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~-----------------~~~~l~~~G~d~vi~p~~ 127 (140)
T 3fwz_A 65 QLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDD-----------------EVAYITERGANQVVMGER 127 (140)
T ss_dssp HHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHH-----------------HHHHHHHTTCSEEEEHHH
T ss_pred HhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCHH-----------------HHHHHHHCCCCEEECchH
Confidence 2222347899887665332 1222223333 3556665554421 112222345888888877
Q ss_pred hHHHHHHHh
Q 009759 275 AIGKDLEAA 283 (526)
Q Consensus 275 ~~~~~l~~~ 283 (526)
.....+.+.
T Consensus 128 ~~a~~i~~~ 136 (140)
T 3fwz_A 128 EIARTMLEL 136 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 125
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=76.01 E-value=6.9 Score=36.85 Aligned_cols=76 Identities=5% Similarity=0.096 Sum_probs=42.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-C-CeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-G-DEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
++|||+++.. |. . ..+++.|++. | ++|.++..+........... .+..+... ...+..
T Consensus 3 ~~~~Ili~g~--------g~-~--~~l~~~l~~~~~~~~v~~~d~~~~~~~~~~~d~-----~~~~~~~~----~~~~~~ 62 (331)
T 2pn1_A 3 QKPHLLITSA--------GR-R--AKLVEYFVKEFKTGRVSTADCSPLASALYMADQ-----HYIVPKID----EVEYID 62 (331)
T ss_dssp TCCEEEEESC--------TT-C--HHHHHHHHHHCCSSEEEEEESCTTCGGGGGSSS-----EEECCCTT----STTHHH
T ss_pred ccceEEEecC--------Cc-h--HHHHHHHHHhcCCCEEEEEeCCCcchhHHhhhc-----eecCCCCC----ChhHHH
Confidence 4589988743 21 2 4688999886 6 88887765433221110000 01111010 112356
Q ss_pred HHHHHHHhcCCCEEEECC
Q 009759 195 RIISEVARFKPDIIHASS 212 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~ 212 (526)
.+.+++++.++|+|+...
T Consensus 63 ~l~~~~~~~~~d~vi~~~ 80 (331)
T 2pn1_A 63 HLLTLCQDEGVTALLTLI 80 (331)
T ss_dssp HHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHcCCCEEEeCC
Confidence 778888888999999864
No 126
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=75.94 E-value=19 Score=29.05 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=66.3
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH-----cCCcEEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma-----~G~PvI~ 420 (526)
..++.|+.+.+ ....+.......+..+...-+.++..+.+.. .|++|+-.. .+.-|..+++.+. ..+|+|.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 35666666543 3445555555545444434444566666554 478877544 3445677777775 3577775
Q ss_pred eCC-CCCC---ceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 421 VRA-GGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 421 ~~~-gg~~---e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
... .... +.+ +.|..+++..+.+.+++..+|..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 87 LTILSDPRDVVRSL---ECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp EECCCSHHHHHHHH---HHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 432 2222 223 45778899999999999999998875
No 127
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=75.72 E-value=21 Score=28.68 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=61.8
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHH---cCCcEEEeC-
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGVR- 422 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~~- 422 (526)
.+++|+.+.+ ....+.......+..+...-+.++....+. ..|++|+-... +.-|..+++.+. .++|+|...
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEC
Confidence 4556666443 233444444434444433333344444443 35787765442 334555666553 367877543
Q ss_pred CCC---CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 423 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 423 ~gg---~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
... ..+.+ ..|..+++..+.+.+++..+|..++...
T Consensus 84 ~~~~~~~~~~~---~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 84 HGDIPMAVQAI---QDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp GGGHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 222 12233 5677899999999999999999887643
No 128
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=75.52 E-value=26 Score=27.17 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=66.4
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCe--EEecccChhhHHHHHHc---------CcEEEecCCC-CCCcHHHHHHHH----
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYAS---------GDVFVMPSES-ETLGLVVLEAMS---- 413 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V--~~~g~v~~~~l~~~~~~---------aDv~v~ps~~-e~~~~~ilEAma---- 413 (526)
.++.++.+.+ ....+.......+. .+...-+.++....+.. .|++++-... +.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 4566777543 34555666655433 44444444676666654 6888875443 345666777665
Q ss_pred -cCCcEEEeC-CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 414 -SGIPVVGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 414 -~G~PvI~~~-~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.++|+|.-. .... .+.+ +.|..+++..+.+.+++.++|..+++
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSY---DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHH---HhchhheecCCCCHHHHHHHHHHHHH
Confidence 457776543 3322 2233 56778999999999999999988864
No 129
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=75.49 E-value=9.5 Score=35.83 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
...+.|+|++. ||.+..-..+++.|.+.||+|.++....
T Consensus 16 ~~~~~~~vlVT---------GasG~iG~~l~~~L~~~g~~V~~~~r~~ 54 (330)
T 2pzm_A 16 PRGSHMRILIT---------GGAGCLGSNLIEHWLPQGHEILVIDNFA 54 (330)
T ss_dssp STTTCCEEEEE---------TTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred ccCCCCEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34455788665 3434455678889999999999987643
No 130
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=75.38 E-value=21 Score=27.37 Aligned_cols=40 Identities=5% Similarity=-0.057 Sum_probs=27.5
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.++|||++++.. ..+.+..+..+-++..++|.+|.+....
T Consensus 4 ~~~mkIlL~C~a-----GmSTsllv~km~~~a~~~gi~v~i~a~~ 43 (108)
T 3nbm_A 4 SKELKVLVLCAG-----SGTSAQLANAINEGANLTEVRVIANSGA 43 (108)
T ss_dssp -CCEEEEEEESS-----SSHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred ccCceEEEECCC-----CCCHHHHHHHHHHHHHHCCCceEEEEcc
Confidence 457999999863 1234445566777777889999998743
No 131
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=75.30 E-value=14 Score=34.24 Aligned_cols=113 Identities=6% Similarity=0.014 Sum_probs=59.2
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.+++||+++.+. .| .-+..|..+.+.- ..+|.++..+....... ....+++.+..+... .....+-
T Consensus 93 ~~~~ri~vl~Sg------~g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~--A~~~gIp~~~~~~~~--~~r~~~~ 160 (292)
T 3lou_A 93 AARPKVLIMVSK------LE--HCLADLLFRWKMGELKMDIVGIVSNHPDFAPL--AAQHGLPFRHFPITA--DTKAQQE 160 (292)
T ss_dssp TSCCEEEEEECS------CC--HHHHHHHHHHHHTSSCCEEEEEEESSSTTHHH--HHHTTCCEEECCCCS--SCHHHHH
T ss_pred CCCCEEEEEEcC------CC--cCHHHHHHHHHcCCCCcEEEEEEeCcHHHHHH--HHHcCCCEEEeCCCc--CCHHHHH
Confidence 446799998752 22 4567777776653 46888887766533222 122222222222111 1111223
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY 242 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~ 242 (526)
..+.+.+++.++|+|++-.+....-..+ + ....-+++-.-+...|.+
T Consensus 161 ~~~~~~l~~~~~Dlivla~y~~il~~~~-l-~~~~~~~iNiHpSlLP~~ 207 (292)
T 3lou_A 161 AQWLDVFETSGAELVILARYMQVLSPEA-S-ARLANRAINIHHSFLPGF 207 (292)
T ss_dssp HHHHHHHHHHTCSEEEESSCCSCCCHHH-H-HHTTTSEEEEEEECSSCC
T ss_pred HHHHHHHHHhCCCEEEecCchhhCCHHH-H-hhhcCCeEEeCCCcCcCC
Confidence 4678889999999999977532221112 2 223344554444445544
No 132
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=75.17 E-value=5.9 Score=37.52 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
...++|+|++. ||.+..-..+++.|.+.||+|.++....
T Consensus 15 ~~~~~~~vlVt---------GatG~iG~~l~~~L~~~G~~V~~~~r~~ 53 (347)
T 4id9_A 15 VPRGSHMILVT---------GSAGRVGRAVVAALRTQGRTVRGFDLRP 53 (347)
T ss_dssp ------CEEEE---------TTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cccCCCEEEEE---------CCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence 34455777655 4445566778899999999999987654
No 133
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=74.88 E-value=27 Score=26.92 Aligned_cols=79 Identities=15% Similarity=0.015 Sum_probs=45.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+++||+++.+. ......+...|...|++|..+... ...
T Consensus 4 ~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~a 41 (132)
T 2rdm_A 4 EAVTILLADDE---------AILLLDFESTLTDAGFLVTAVSSG---------------------------------AKA 41 (132)
T ss_dssp SSCEEEEECSS---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------HHH
T ss_pred CCceEEEEcCc---------HHHHHHHHHHHHHcCCEEEEECCH---------------------------------HHH
Confidence 45799888653 245567777888889988753211 244
Q ss_pred HHHHHhc-CCCEEEECC--Cc-hHHH--HHHHHHHhcCCCEEEEEec
Q 009759 197 ISEVARF-KPDIIHASS--PG-IMVF--GALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 197 ~~~l~~~-~pDiV~~~~--~~-~~~~--~~~~~~~~~~~p~v~~~h~ 237 (526)
.+.+.+. +||+|++.. +. ..++ ...+......+|+|+....
T Consensus 42 ~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 42 IEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESS
T ss_pred HHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4556665 899998853 21 2222 2222223346787765443
No 134
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=74.86 E-value=13 Score=34.20 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=102.6
Q ss_pred CCCCcEEEEEeccCCCCccCchH-HHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYK-NRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
..+..+|+++..... ..-.. ..+..+.+++.+.|+++.++....... ..
T Consensus 10 ~~~s~~Igvi~~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~ 59 (301)
T 3miz_A 10 SSRSNTFGIITDYVS---TTPYSVDIVRGIQDWANANGKTILIANTGGSSE---------------------------RE 59 (301)
T ss_dssp --CCCEEEEEESSTT---TCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HH
T ss_pred hCCCCEEEEEeCCCc---CcccHHHHHHHHHHHHHHCCCEEEEEeCCCChH---------------------------HH
Confidence 445578999876422 12233 567788889999999999876533210 01
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCC
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 273 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S 273 (526)
..+.+.+...++|-|++....... .+......++|+|+.-...... ...+.|.+-.
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~~--~~~~~~~~~iPvV~~~~~~~~~----------------------~~~~~V~~D~ 115 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRRI--VDPESGDVSIPTVMINCRPQTR----------------------ELLPSIEPDD 115 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEEE--CCCCCTTCCCCEEEEEEECSST----------------------TSSCEEEECH
T ss_pred HHHHHHHHhCCCCEEEEecCCccH--HHHHHHhCCCCEEEECCCCCCC----------------------CCCCEEeeCh
Confidence 244455556689988775422111 1122345689998765543211 0122333322
Q ss_pred hh----HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhc-CCCCCCcEEEEEe---cccccccH--HHHHH
Q 009759 274 VA----IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-NGEPDKPLIVHVG---RLGVEKSL--DFLKR 343 (526)
Q Consensus 274 ~~----~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vG---~l~~~Kg~--~~li~ 343 (526)
.. ..+.+.+.+ ..++.++....+.. .........+..+. .+.+-....++.+ ......+. +.+.+
T Consensus 116 ~~~g~~a~~~L~~~G---~~~I~~i~~~~~~~--~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (301)
T 3miz_A 116 YQGARDLTRYLLERG---HRRIGYIRLNPILL--GAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATE 190 (301)
T ss_dssp HHHHHHHHHHHHTTT---CCSEEEEECCTTSH--HHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCeEEEEecCccch--hHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHH
Confidence 22 223333333 24666655322110 00000111111110 0112233455666 67777777 77777
Q ss_pred HHHhCCCcEEEEEeCCccHHHHHHHhcCC------CeEEeccc
Q 009759 344 VMDRLPEARIAFIGDGPYREELEKMFTGM------PAVFTGML 380 (526)
Q Consensus 344 a~~~l~~~~l~ivG~g~~~~~l~~l~~~~------~V~~~g~v 380 (526)
.+...++..-+++.++...-.+.+.+.+. .|.+.|+=
T Consensus 191 ~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 233 (301)
T 3miz_A 191 MLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFD 233 (301)
T ss_dssp HHTSTTCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSB
T ss_pred HHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEeC
Confidence 77766777777777544332333333333 26677774
No 135
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=74.60 E-value=56 Score=30.51 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=52.8
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... ...-....+..+-+++.+.|+++.+........ ...
T Consensus 65 ~~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~ 114 (344)
T 3kjx_A 65 SNRVNLVAVIIPSL---SNMVFPEVLTGINQVLEDTELQPVVGVTDYLPE---------------------------KEE 114 (344)
T ss_dssp TSCCSEEEEEESCS---SSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHH---------------------------HHH
T ss_pred cCCCCEEEEEeCCC---CcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHH---------------------------HHH
Confidence 34456898887542 112234567778888889999998775433210 011
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
...+.+...++|-|++....... ..+......++|+|+..
T Consensus 115 ~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 115 KVLYEMLSWRPSGVIIAGLEHSE-AARAMLDAAGIPVVEIM 154 (344)
T ss_dssp HHHHHHHTTCCSEEEEECSCCCH-HHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHhCCCCEEEEECCCCCH-HHHHHHHhCCCCEEEEe
Confidence 33444555689988875432221 22333456799998764
No 136
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=74.60 E-value=26 Score=27.01 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=63.5
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc---CcEEEecCCC-C-CCcHHHHHHHH---cCCcEEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-E-TLGLVVLEAMS---SGIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~---aDv~v~ps~~-e-~~~~~ilEAma---~G~PvI~ 420 (526)
..++.|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-... + .-|..+++.+. .++|+|.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 45777777653 3344555554444444444444666666653 5888875443 2 34666666654 3678765
Q ss_pred e-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 421 V-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 421 ~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
. .............. .+++..+.+.+++..+|.+++..
T Consensus 85 ~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 85 ISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp EESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHT
T ss_pred EeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhc
Confidence 4 33322222211122 26899999999999999888764
No 137
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=74.58 E-value=2.8 Score=38.47 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=33.7
Q ss_pred hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC
Q 009759 383 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP 427 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~ 427 (526)
+++.+++..+|++|-.+..+..--.+..++..|+|+|+..+|...
T Consensus 65 ~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~ 109 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSE 109 (272)
T ss_dssp CCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 577788889999997765444444566789999999987776433
No 138
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=74.48 E-value=25 Score=31.70 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=54.8
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+..+|+++.... ...-....+..+.+++.+.|+++.++....... ....
T Consensus 5 ~~s~~Igvi~~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~---------------------------~~~~ 54 (276)
T 3jy6_A 5 QSSKLIAVIVANI---DDYFSTELFKGISSILESRGYIGVLFDANADIE---------------------------REKT 54 (276)
T ss_dssp CCCCEEEEEESCT---TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHH---------------------------HHHH
T ss_pred CCCcEEEEEeCCC---CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHH---------------------------HHHH
Confidence 4456899987532 222344566778888899999999876543210 0124
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
+.+.+...++|.|++..... ...+......++|+|+.-.
T Consensus 55 ~~~~l~~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 55 LLRAIGSRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHTTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESC
T ss_pred HHHHHHhCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEec
Confidence 44555566999888876443 2223334557999987543
No 139
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=74.46 E-value=24 Score=27.50 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
...++||+++.+. ......+...|.+.|++|...+... .
T Consensus 6 ~~~~~~iLivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~~--------------------------------~ 44 (140)
T 3cg0_A 6 SDDLPGVLIVEDG---------RLAAATLRIQLESLGYDVLGVFDNG--------------------------------E 44 (140)
T ss_dssp --CCCEEEEECCB---------HHHHHHHHHHHHHHTCEEEEEESSH--------------------------------H
T ss_pred CCCCceEEEEECC---------HHHHHHHHHHHHHCCCeeEEEECCH--------------------------------H
Confidence 3445799888653 2455667777877899887432211 2
Q ss_pred HHHHHHHhcCCCEEEECCC---chHHH--HHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSP---GIMVF--GALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~---~~~~~--~~~~~~~~~~~p~v~~~h 236 (526)
...+.+.+.+||+|++... ...++ ...+... ..+|+|+...
T Consensus 45 ~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~ls~ 90 (140)
T 3cg0_A 45 EAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPIIFITS 90 (140)
T ss_dssp HHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEEEC
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEEec
Confidence 4455566678999998632 11222 2222222 5788876543
No 140
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=74.40 E-value=19 Score=28.30 Aligned_cols=110 Identities=18% Similarity=0.243 Sum_probs=64.4
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~~ 421 (526)
.++.|+.+.+ ....+.......+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 4566666543 3344444444444444433344555555543 488887544 34456677776643 5777754
Q ss_pred C-CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 R-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 ~-~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
. .+.........+.|..+++..+.+.+++..+|..++..
T Consensus 85 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 85 TAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp ECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 3 33222111111457788999999999999999998864
No 141
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=74.39 E-value=19 Score=33.43 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=25.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.++|++|..+ | +=....+-..+..+.+.|++|.+++...+
T Consensus 4 ~~~vL~v~AH-P----DDe~l~~ggtla~~~~~G~~V~vv~lT~G 43 (303)
T 1q74_A 4 TPRLLFVHAH-P----DDESLSNGATIAHYTSRGAQVHVVTCTLG 43 (303)
T ss_dssp CCEEEEEESS-T----THHHHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred CCeEEEEEeC-C----chHHHhHHHHHHHHHHCCCcEEEEEEcCC
Confidence 4689888764 3 22223344556666778999999986544
No 142
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=74.34 E-value=5 Score=37.91 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=25.9
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+.+|+|++. ||.+..-..+++.|.+.|++|.++....
T Consensus 3 ~~~~~vlVT---------GatG~iG~~l~~~L~~~G~~V~~~~r~~ 39 (341)
T 3enk_A 3 STKGTILVT---------GGAGYIGSHTAVELLAHGYDVVIADNLV 39 (341)
T ss_dssp CSSCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred CCCcEEEEe---------cCCcHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345777555 3444445678999999999999886543
No 143
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=74.31 E-value=9.6 Score=35.57 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=43.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc-c------cCceeccccccCCCccccccchhc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE-F------YGAKLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~ 191 (526)
|||+|+... .......++|.+.||+|..+.+....... . ......+++.+.....
T Consensus 1 mrivf~gt~----------~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~-------- 62 (305)
T 2bln_A 1 MKTVVFAYH----------DMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNV-------- 62 (305)
T ss_dssp CEEEEEECH----------HHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCC--------
T ss_pred CEEEEEEcC----------HHHHHHHHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcC--------
Confidence 789888642 44556677777889999887765432210 0 0001112222211110
Q ss_pred ccHHHHHHHHhcCCCEEEECCC
Q 009759 192 LSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
....+.+.+++.+||++++-.+
T Consensus 63 ~~~~~~~~l~~~~~Dliv~~~y 84 (305)
T 2bln_A 63 NHPLWVERIAQLSPDVIFSFYY 84 (305)
T ss_dssp CSHHHHHHHHHTCCSEEEEESC
T ss_pred CcHHHHHHHHhcCCCEEEEecc
Confidence 1135677888999999998765
No 144
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=74.29 E-value=10 Score=29.98 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=36.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+++||+++.+. ......+.+.|.+.|++|..+... ...
T Consensus 3 ~~~~iLivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~a 40 (142)
T 2qxy_A 3 LTPTVMVVDES---------RITFLAVKNALEKDGFNVIWAKNE---------------------------------QEA 40 (142)
T ss_dssp CCCEEEEECSC---------HHHHHHHHHHHGGGTCEEEEESSH---------------------------------HHH
T ss_pred CCCeEEEEeCC---------HHHHHHHHHHHHhCCCEEEEECCH---------------------------------HHH
Confidence 45789888653 245567777888889988743211 244
Q ss_pred HHHHHhcCCCEEEECC
Q 009759 197 ISEVARFKPDIIHASS 212 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~ 212 (526)
.+.+.+.+||+|++..
T Consensus 41 ~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 41 FTFLRREKIDLVFVDV 56 (142)
T ss_dssp HHHHTTSCCSEEEEEC
T ss_pred HHHHhccCCCEEEEeC
Confidence 5566667899999875
No 145
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=74.17 E-value=25 Score=27.59 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=46.0
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+++||+++.+. ......+...|.+.|++|..+... ...
T Consensus 4 ~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~a 41 (140)
T 3h5i_A 4 KDKKILIVEDS---------KFQAKTIANILNKYGYTVEIALTG---------------------------------EAA 41 (140)
T ss_dssp --CEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------HHH
T ss_pred CCcEEEEEeCC---------HHHHHHHHHHHHHcCCEEEEecCh---------------------------------HHH
Confidence 45799888653 245667788888899988754221 134
Q ss_pred HHHHHh-cCCCEEEECCC--c-hHHHHH-HHHHHhcCCCEEEEEec
Q 009759 197 ISEVAR-FKPDIIHASSP--G-IMVFGA-LIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 197 ~~~l~~-~~pDiV~~~~~--~-~~~~~~-~~~~~~~~~p~v~~~h~ 237 (526)
...+.+ ..||+|++... . ..++.. ..+....++|+|+....
T Consensus 42 ~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 42 VEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp HHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred HHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 445554 68999998542 1 222221 12233467888765544
No 146
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=74.05 E-value=51 Score=29.82 Aligned_cols=182 Identities=9% Similarity=-0.005 Sum_probs=90.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++. .. ...-....+..+.+++.+.|+++.+........ . .
T Consensus 9 ~~~~~~Igvi~-~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~---------------------------~ 56 (289)
T 3k9c_A 9 QASSRLLGVVF-EL---QQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRA-E---------------------------K 56 (289)
T ss_dssp ----CEEEEEE-ET---TCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBC-H---------------------------H
T ss_pred cCCCCEEEEEE-ec---CCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHH-H---------------------------H
Confidence 34456888887 32 112344567788888999999999987654311 0 1
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
...+.+...++|-|++....... ..+..... ++|+|+.-..... ...+.|.+-..
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~~~-~iPvV~i~~~~~~-----------------------~~~~~V~~D~~ 111 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDT-DELGALAD-RVPALVVARASGL-----------------------PGVGAVRGDDV 111 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCH-HHHHHHHT-TSCEEEESSCCSS-----------------------TTSEEEEECHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCH-HHHHHHHc-CCCEEEEcCCCCC-----------------------CCCCEEEeChH
Confidence 23333445588988776432221 12222233 9999875433211 01223333222
Q ss_pred h----HHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhcC-CCCCCcEEEEEecccccccHHHHHHHHHhCC
Q 009759 275 A----IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP 349 (526)
Q Consensus 275 ~----~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~ 349 (526)
. ..+.+.+.+ ..++.++....+. .........+..+.. +..-.. .+..+......+.+.+.+.+...+
T Consensus 112 ~~~~~a~~~L~~~G---~~~I~~i~~~~~~---~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 184 (289)
T 3k9c_A 112 AGITLAVDHLTELG---HRNIAHIDGADAP---GGADRRAGFLAAMDRHGLSASA-TVVTGGTTETEGAEGMHTLLEMPT 184 (289)
T ss_dssp HHHHHHHHHHHHTT---CCSEEEECCTTST---THHHHHHHHHHHHHHTTCGGGE-EEECCCSSHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHCC---CCcEEEEeCCCCc---cHHHHHHHHHHHHHHCCCCCCc-cEEECCCCHHHHHHHHHHHHcCCC
Confidence 2 233444443 2466666532211 111111111111111 111112 344566777777887777777767
Q ss_pred CcEEEEEeCCc
Q 009759 350 EARIAFIGDGP 360 (526)
Q Consensus 350 ~~~l~ivG~g~ 360 (526)
+...+++.+..
T Consensus 185 ~~~ai~~~~d~ 195 (289)
T 3k9c_A 185 PPTAVVAFNDR 195 (289)
T ss_dssp CCSEEEESSHH
T ss_pred CCCEEEECChH
Confidence 77777777543
No 147
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=74.01 E-value=23 Score=28.34 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=65.2
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc---CcEEEecCC-CCCCcHHHHHHHH---cCCcEEEe-
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~---aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~- 421 (526)
.+++|+.+.+ ..+.+....+. +..+...-+.++....+.. .|++|+-.. .+.-|..+++.+. ...|+|..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 4677777653 33445555543 4444444444666666553 388887544 3445666666554 35777654
Q ss_pred CCCCC---CceecccCCC-ceeEeeCCCCHHHHHHHHHHhhhCHHH
Q 009759 422 RAGGI---PDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQEL 463 (526)
Q Consensus 422 ~~gg~---~e~v~~~~~~-~~g~~~~~~d~~~la~ai~~ll~d~~~ 463 (526)
..... .+.+ ..| ..+++..+.+.+++.++|..+++....
T Consensus 84 ~~~~~~~~~~~~---~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 84 GNQDLTTAMEAV---NEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp CGGGHHHHHHHH---HHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---HcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 22221 2233 445 678999999999999999999865443
No 148
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=73.66 E-value=30 Score=29.28 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+++ ||.+..-..+++.|.+.|++|.++..+.
T Consensus 4 ~~ilVt---------GatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIF---------GATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEE---------STTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEE---------cCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 788665 4444556778999999999999987654
No 149
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=73.58 E-value=23 Score=32.35 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=26.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.++||+|..+ | +=....+-.++..+.+.|++|.+++...+
T Consensus 7 ~~rvLvv~aH-P----DDe~lg~GGtia~~~~~G~~V~vv~~T~G 46 (273)
T 3dff_A 7 ATRLLAISPH-L----DDAVLSFGAGLAQAAQDGANVLVYTVFAG 46 (273)
T ss_dssp -CEEEEEESS-T----THHHHHHHHHHHHHHHTTCEEEEEETTCC
T ss_pred CCCEEEEEeC-C----ChHHHhHHHHHHHHHHCCCcEEEEEEeCC
Confidence 5799888764 3 22333344566667778999999986554
No 150
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=73.40 E-value=31 Score=26.99 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=64.0
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcEEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~ 420 (526)
..+++|+.+.+ ..+.+.......+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+.. .+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 45666776543 3344444444434444433344566665554 477776544 24456677777754 466664
Q ss_pred e-CCCC---CCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 421 V-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 421 ~-~~gg---~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
. .... ..+.+ +.|..+++..+.+.+++.++|..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 87 LTAKNAPDAKMIGL---QEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EECTTCCCCSSTTG---GGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHH---hcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4 3322 22333 55778899999999999999988864
No 151
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=73.37 E-value=32 Score=31.16 Aligned_cols=92 Identities=12% Similarity=-0.025 Sum_probs=51.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... ....-.......+.+++.+.|+++.++...........
T Consensus 8 ~~~~~~Igvi~~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-------------------------- 59 (289)
T 3g85_A 8 SQSKPTIALYWSSD--ISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHL-------------------------- 59 (289)
T ss_dssp ---CCEEEEEEETT--SCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGG--------------------------
T ss_pred cCCCceEEEEeccc--cchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHH--------------------------
Confidence 44556899887511 11223456677888889999999988765433211110
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
+.+.+...++|.|++....... ..+......++|+|+.-.
T Consensus 60 -~~~~l~~~~vdgiIi~~~~~~~-~~~~~~~~~~iPvV~~~~ 99 (289)
T 3g85_A 60 -EKGISKENSFDAAIIANISNYD-LEYLNKASLTLPIILFNR 99 (289)
T ss_dssp -CGGGSTTTCCSEEEESSCCHHH-HHHHHHCCCSSCEEEESC
T ss_pred -HHHHHhccCCCEEEEecCCccc-HHHHHhccCCCCEEEECC
Confidence 0111223388999887654332 223333456899887543
No 152
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=73.34 E-value=24 Score=27.47 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=65.5
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc---CcEEEecCC-CCCCcHHHHHHHHc----CCcEEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMSS----GIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~---aDv~v~ps~-~e~~~~~ilEAma~----G~PvI~ 420 (526)
..+++|+.+.+ ....++....+.+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+.. .+|+|.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 35677777543 3344555554444444444444555555443 577776544 34557777777754 367765
Q ss_pred eC-CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 421 VR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 421 ~~-~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
.. .... .+.+ +.|..+++..+.+.++|.++|.++....
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVM---HLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 43 3322 2233 5678899999999999999999988654
No 153
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=73.19 E-value=3.7 Score=38.00 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=32.1
Q ss_pred hhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCC
Q 009759 383 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 426 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~ 426 (526)
+++.+++..+|++|--+..+..--.+..++.+|+|+|+..+|..
T Consensus 80 ~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~ 123 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFS 123 (288)
T ss_dssp SCHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 46778888999999666533333345678999999998777643
No 154
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=73.17 E-value=30 Score=26.73 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=44.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+|||+++.+. ......+.+.|.+.|++|...+.+.. ...
T Consensus 1 ~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~~~--------------------------------~a~ 39 (134)
T 3f6c_A 1 SLNAIIIDDH---------PLAIAAIRNLLIKNDIEILAELTEGG--------------------------------SAV 39 (134)
T ss_dssp CEEEEEECCC---------HHHHHHHHHHHHHTTEEEEEEESSST--------------------------------THH
T ss_pred CeEEEEEcCC---------HHHHHHHHHHHhhCCcEEEEEcCCHH--------------------------------HHH
Confidence 3789888653 24566778888888987763333221 233
Q ss_pred HHHHhcCCCEEEECCC--chHH--HHHHHHHHhcCCCEEEEEe
Q 009759 198 SEVARFKPDIIHASSP--GIMV--FGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~--~~~~--~~~~~~~~~~~~p~v~~~h 236 (526)
+.+.+.+||+|++... ...+ +...+......+|+|+...
T Consensus 40 ~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 82 (134)
T 3f6c_A 40 QRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSA 82 (134)
T ss_dssp HHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeC
Confidence 4556678999999642 2222 2222223334667665443
No 155
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=72.84 E-value=9.4 Score=34.39 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeC
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~ 160 (526)
......|||++|... | ..+|.... +..+++.+.+.|++|.++-..
T Consensus 29 ~~~~~~mkIliI~GS-~--r~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 29 AFSTHRPRILILYGS-L--RTVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp CCCCSCCEEEEEECC-C--CSSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred hccCCCCeEEEEEcc-C--CCCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 344556899999764 3 33565544 556778888889999988643
No 156
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=72.83 E-value=18 Score=33.39 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=26.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.|||++. ||.+..-..+++.|.+.|++|.++...
T Consensus 2 ~~~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVT---------GGTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE---------CCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3677665 455566677899999999999999876
No 157
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=72.72 E-value=22 Score=27.46 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=62.3
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCC-CCCCcHHHHHHHHc-----CCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~~ 421 (526)
.++.|+.+.+ ....+.....+.+..+...-+.++....+. ..|++|+-.. .+.-|..+++.+.. ..|+|.+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVV 86 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEE
Confidence 4566666543 334444444444433333333355555543 3477776544 34456777777753 2445544
Q ss_pred CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
............+.|..+++..+.+.+++.++|.+....
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 87 SGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred eCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 332222211111567788999999999999999988764
No 158
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=72.72 E-value=17 Score=33.58 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=57.1
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCC-CCCccccCceeccccccCCCccccccchhcc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHE-GVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
.+++||+++.+. .+.-+..|+.+.++- ..+|.++..+. ...... .+..+++.+..+... .....+
T Consensus 87 ~~~~ri~vl~Sg--------~g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~--A~~~gIp~~~~~~~~--~~r~~~ 154 (288)
T 3obi_A 87 ETRRKVMLLVSQ--------SDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSG--FDFGDIPFYHFPVNK--DTRRQQ 154 (288)
T ss_dssp TSCEEEEEEECS--------CCHHHHHHHHHHHTTSSCEEEEEEEESSCGGGSCC--TTTTTCCEEECCCCT--TTHHHH
T ss_pred CCCcEEEEEEcC--------CCCCHHHHHHHHHCCCCCeEEEEEEcCCChhHHHH--HHHcCCCEEEeCCCc--ccHHHH
Confidence 456899998752 224566777776653 24677666655 322211 122222222222111 111122
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCccc
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY 242 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~ 242 (526)
-..+.+.+++.++|+|++-.+....-..+ + ....-+++-.-+...|.+
T Consensus 155 ~~~~~~~l~~~~~Dlivlagy~~il~~~~-l-~~~~~~~iNiHpSlLP~~ 202 (288)
T 3obi_A 155 EAAITALIAQTHTDLVVLARYMQILSDEM-S-ARLAGRCINIHHSFLPGF 202 (288)
T ss_dssp HHHHHHHHHHHTCCEEEESSCCSCCCHHH-H-HHTTTSEEEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCEEEhhhhhhhCCHHH-H-hhhcCCeEEeCcccccCC
Confidence 34678889999999999977532221112 2 223344554444445544
No 159
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=72.61 E-value=26 Score=32.06 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=27.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||||+--+. |=.+.-+..|+++|++.| +|.|+++..+
T Consensus 1 M~ILlTNDD------Gi~ApGi~aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 1 MKILVTNDD------GVHSPGLRLLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp CEEEEECSS------CTTCHHHHHHHHHHGGGS-EEEEEEESSC
T ss_pred CeEEEEcCC------CCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 788665432 223356889999999988 9999998654
No 160
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=72.44 E-value=24 Score=27.08 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=36.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
++||+++.+. ......+.+.|.+.|++|..+.. .....
T Consensus 3 ~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~---------------------------------~~~a~ 40 (127)
T 3i42_A 3 LQQALIVEDY---------QAAAETFKELLEMLGFQADYVMS---------------------------------GTDAL 40 (127)
T ss_dssp CEEEEEECSC---------HHHHHHHHHHHHHTTEEEEEESS---------------------------------HHHHH
T ss_pred cceEEEEcCC---------HHHHHHHHHHHHHcCCCEEEECC---------------------------------HHHHH
Confidence 4689888653 24566778888888997765421 12455
Q ss_pred HHHHhcCCCEEEECC
Q 009759 198 SEVARFKPDIIHASS 212 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~ 212 (526)
+.+.+.+||+|++..
T Consensus 41 ~~l~~~~~dlii~D~ 55 (127)
T 3i42_A 41 HAMSTRGYDAVFIDL 55 (127)
T ss_dssp HHHHHSCCSEEEEES
T ss_pred HHHHhcCCCEEEEeC
Confidence 666777999999964
No 161
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=72.30 E-value=37 Score=30.84 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=50.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... ...-.......+-+++.+.|+++.+........ ...
T Consensus 17 ~~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~---------------------------~~~ 66 (293)
T 2iks_A 17 AGRTRSIGLVIPDL---ENTSYTRIANYLERQARQRGYQLLIACSEDQPD---------------------------NEM 66 (293)
T ss_dssp -CCCCEEEEEESCS---CSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHH
T ss_pred cCCCcEEEEEeCCC---cCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHH---------------------------HHH
Confidence 34556899887531 112234556677778889999998765432100 001
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
...+.+...++|.|++..........+......++|+|+.-.
T Consensus 67 ~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 67 RCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDR 108 (293)
T ss_dssp HHHHHHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECC
Confidence 233444456899888865322111111223446899887544
No 162
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=72.26 E-value=22 Score=27.89 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=63.7
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHHc--CCcEEEe-C
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-R 422 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma~--G~PvI~~-~ 422 (526)
..++.|+.+.+ ....+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+.. .+|+|.- .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 35677777654 3344555555444443333333555555543 5888764332 3345666666643 5777654 3
Q ss_pred CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 423 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 423 ~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.... .+.+ +.|..+++..+.+.+++..+|..++.
T Consensus 84 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 84 INEDQSILNAL---NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 3322 2233 56788999999999999999988764
No 163
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=72.04 E-value=28 Score=27.36 Aligned_cols=112 Identities=8% Similarity=0.025 Sum_probs=66.8
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCe--EEecccChhhHHHHHHc-------CcEEEecCC-CCCCcHHHHHHHHc-----
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYAS-------GDVFVMPSE-SETLGLVVLEAMSS----- 414 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V--~~~g~v~~~~l~~~~~~-------aDv~v~ps~-~e~~~~~ilEAma~----- 414 (526)
.+++|+.+.+ ....+..+....+. .+...-+.++....+.. .|++|+-.. .+.-|..+++.+..
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 89 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPM 89 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhc
Confidence 4666776543 33455555555443 33333444666666655 688887554 34556677776654
Q ss_pred --CCcEEEeCCCC-CCceecccCCC-ceeEeeCCCCHHHHHHHHHHhhhCHH
Q 009759 415 --GIPVVGVRAGG-IPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQE 462 (526)
Q Consensus 415 --G~PvI~~~~gg-~~e~v~~~~~~-~~g~~~~~~d~~~la~ai~~ll~d~~ 462 (526)
..|+|...... ..........+ ..+++..+-+.++|.++|.+......
T Consensus 90 ~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 90 KNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp TTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred cCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 56776543322 21111111455 77899999999999999999887543
No 164
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=72.03 E-value=17 Score=28.50 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=35.8
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.++|||+++.+. ......+.+.|.+.|++|..+... ..
T Consensus 5 ~~~~~ilivdd~---------~~~~~~l~~~L~~~~~~v~~~~~~---------------------------------~~ 42 (137)
T 3hdg_A 5 EVALKILIVEDD---------TDAREWLSTIISNHFPEVWSAGDG---------------------------------EE 42 (137)
T ss_dssp --CCCEEEECSC---------HHHHHHHHHHHHTTCSCEEEESSH---------------------------------HH
T ss_pred ccccEEEEEeCC---------HHHHHHHHHHHHhcCcEEEEECCH---------------------------------HH
Confidence 445899888653 245566777777778777655321 24
Q ss_pred HHHHHHhcCCCEEEECC
Q 009759 196 IISEVARFKPDIIHASS 212 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~ 212 (526)
..+.+++.+||+|++..
T Consensus 43 a~~~l~~~~~dlvi~d~ 59 (137)
T 3hdg_A 43 GERLFGLHAPDVIITDI 59 (137)
T ss_dssp HHHHHHHHCCSEEEECS
T ss_pred HHHHHhccCCCEEEEeC
Confidence 55566777999999964
No 165
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=72.02 E-value=4.6 Score=39.44 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=42.2
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccc-cCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEF-YGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
+.+||+++.. |+ ....++++++++|++|.++.......... ..... +..+ ......
T Consensus 6 ~~~~ilI~g~-------g~---~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~-----~~~~--------~~d~~~ 62 (403)
T 4dim_A 6 DNKRLLILGA-------GR---GQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEI-----SYMD--------ISNPDE 62 (403)
T ss_dssp CCCEEEEECC-------CG---GGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEE-----EECC--------TTCHHH
T ss_pred CCCEEEEECC-------cH---hHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeE-----EEec--------CCCHHH
Confidence 4578888743 11 14568999999999999996422111100 00010 1111 112357
Q ss_pred HHHHHHhcCCCEEEEC
Q 009759 196 IISEVARFKPDIIHAS 211 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~ 211 (526)
+.+++++.++|.|+..
T Consensus 63 l~~~~~~~~~d~v~~~ 78 (403)
T 4dim_A 63 VEQKVKDLNLDGAATC 78 (403)
T ss_dssp HHHHTTTSCCSEEECC
T ss_pred HHHHHHHcCCCEEEeC
Confidence 7788888899999974
No 166
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=71.99 E-value=30 Score=27.89 Aligned_cols=81 Identities=7% Similarity=0.045 Sum_probs=47.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..++|||+++.+. ......+.+.|.+.|++|...+.+. .
T Consensus 33 ~~~~~~Ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~~--------------------------------~ 71 (157)
T 3hzh_A 33 TGIPFNVLIVDDS---------VFTVKQLTQIFTSEGFNIIDTAADG--------------------------------E 71 (157)
T ss_dssp TTEECEEEEECSC---------HHHHHHHHHHHHHTTCEEEEEESSH--------------------------------H
T ss_pred CCCceEEEEEeCC---------HHHHHHHHHHHHhCCCeEEEEECCH--------------------------------H
Confidence 4455799888653 2456677788888899885232211 2
Q ss_pred HHHHHHHhc--CCCEEEECCC--chHH--HHHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARF--KPDIIHASSP--GIMV--FGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~--~pDiV~~~~~--~~~~--~~~~~~~~~~~~p~v~~~h 236 (526)
...+.+.+. +||+|++... ...+ +...+......+|+|+...
T Consensus 72 ~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 119 (157)
T 3hzh_A 72 EAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISA 119 (157)
T ss_dssp HHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEec
Confidence 455566666 7899999642 2222 2222223334677776543
No 167
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=71.75 E-value=24 Score=27.27 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCEEEECCC--chHHHHHHH-HHH---hcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSP--GIMVFGALI-IAK---LLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~--~~~~~~~~~-~~~---~~~~p~v~~~h 236 (526)
...+.+.+.+||+|++... ...++..+. +.. ..++|+|+...
T Consensus 38 ~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 38 SGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 4555667779999999642 222222222 222 23678776554
No 168
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=71.64 E-value=9.5 Score=34.05 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.++|++|.++....
T Consensus 8 Gasg~iG~~l~~~L~~~g~~V~~~~r~~ 35 (255)
T 2dkn_A 8 GSASGIGAALKELLARAGHTVIGIDRGQ 35 (255)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 3444555678899999999999887543
No 169
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=71.35 E-value=7.3 Score=34.05 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=30.1
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
++++||++-... +-+......+++.|.+.|++|.++.+..
T Consensus 2 ~~~k~IllgvTG------aiaa~k~~~ll~~L~~~g~eV~vv~T~~ 41 (209)
T 3zqu_A 2 SGPERITLAMTG------ASGAQYGLRLLDCLVQEEREVHFLISKA 41 (209)
T ss_dssp CSCSEEEEEECS------SSCHHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CCCCEEEEEEEC------HHHHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 345788777652 2244668899999999999999998643
No 170
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=71.17 E-value=51 Score=28.56 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=90.1
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCC------CeEEecccChhhHHHHHHcCcEE
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM------PAVFTGMLLGEELSQAYASGDVF 395 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~------~V~~~g~v~~~~l~~~~~~aDv~ 395 (526)
.-..++|-|.+.....-..+++-+-.. ...+-+.|+.... ..+.. .-.|.|.++-.++.+--+.|-..
T Consensus 180 k~~d~iyggsfrsg~re~kmve~lfdt-gl~ieffg~~~~~-----qfknp~~pwt~~pvf~gki~~~~~~~~ns~a~a~ 253 (351)
T 1jg7_A 180 KTLDVIYGGSFRSGQRESKMVEFLFDT-GLNIEFFGNAREK-----QFKNPKYPWTKAPVFTGKIPMNMVSEKNSQAIAA 253 (351)
T ss_dssp CCEEEEEECCCGGGTTHHHHHHHHSSC-SSCEEEESSCCGG-----GCCCTTSCCSSCCEEEECCCGGGHHHHHTTEEEE
T ss_pred ceeeeeeccccccCchHHHHHHHHHhc-CcceeeecchhHH-----hccCCCCCCcCCCccCCcCCHHHHhhccccceEE
Confidence 345688999887665555555544332 5667777864311 11111 25689999988888777776655
Q ss_pred EecCC----CCCCcHHHHHHHHcCCcEEEeCCCCC-CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHHHHHHHHH
Q 009759 396 VMPSE----SETLGLVVLEAMSSGIPVVGVRAGGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQA 470 (526)
Q Consensus 396 v~ps~----~e~~~~~ilEAma~G~PvI~~~~gg~-~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~~~~~~~~ 470 (526)
++-.. ..-....+.|+||.....+.-..-.. ..++ ++ .-+.+. +-+++.+.+.++-.+..++.++-+-
T Consensus 254 ~i~gdk~y~~n~it~rvwe~~as~av~~~d~~fd~~~~i~----~~-a~fyv~--nr~elid~in~~k~~~~~r~e~l~~ 326 (351)
T 1jg7_A 254 LIIGDKNYNDNFITLRVWETMASDAVMLIDEEFDTKHRII----ND-ARFYVN--NRAELIDRVNELKHSDVLRKEMLSI 326 (351)
T ss_dssp EECCCGGGTTTCCCHHHHHHHTSSSEEEEEGGGCTTCCSC----SC-GGGEEC--SHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEeccccccCCeecHHHHHHHhhhhHhhhhcccCcccccc----cC-ceeEec--CHHHHHHHHhhccchHHHHHHHHHH
Confidence 55432 23356789999998876654432222 2233 23 335665 8999999999999999998887665
Q ss_pred HHHHHH
Q 009759 471 ARQEME 476 (526)
Q Consensus 471 a~~~~~ 476 (526)
....++
T Consensus 327 qh~il~ 332 (351)
T 1jg7_A 327 QHDILN 332 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 171
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=71.12 E-value=15 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=22.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|||++. ||.+..-..+++.|. .||+|.++...
T Consensus 1 m~ilVt---------GatG~iG~~l~~~L~-~g~~V~~~~r~ 32 (299)
T 1n2s_A 1 MNILLF---------GKTGQVGWELQRSLA-PVGNLIALDVH 32 (299)
T ss_dssp CEEEEE---------CTTSHHHHHHHHHTT-TTSEEEEECTT
T ss_pred CeEEEE---------CCCCHHHHHHHHHhh-cCCeEEEeccc
Confidence 677655 444455667888888 89999988643
No 172
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=70.90 E-value=19 Score=28.34 Aligned_cols=56 Identities=5% Similarity=0.045 Sum_probs=37.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..++++|+++.+. ......+.+.|.+.|++|..+.. ..
T Consensus 4 ~~~~~~iLivdd~---------~~~~~~l~~~L~~~g~~v~~~~~---------------------------------~~ 41 (142)
T 3cg4_A 4 AEHKGDVMIVDDD---------AHVRIAVKTILSDAGFHIISADS---------------------------------GG 41 (142)
T ss_dssp --CCCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESS---------------------------------HH
T ss_pred CCCCCeEEEEcCC---------HHHHHHHHHHHHHCCeEEEEeCC---------------------------------HH
Confidence 3456799888653 25567788888888998764421 12
Q ss_pred HHHHHHHhcCCCEEEECC
Q 009759 195 RIISEVARFKPDIIHASS 212 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~ 212 (526)
...+.+++..||+|++..
T Consensus 42 ~a~~~l~~~~~dlii~d~ 59 (142)
T 3cg4_A 42 QCIDLLKKGFSGVVLLDI 59 (142)
T ss_dssp HHHHHHHTCCCEEEEEES
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 455666777899999864
No 173
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=70.75 E-value=8.7 Score=30.23 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=60.6
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc-CcEEEecCCC-CCCcHHHHHHHH--c-----CCc-E
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSES-ETLGLVVLEAMS--S-----GIP-V 418 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~-aDv~v~ps~~-e~~~~~ilEAma--~-----G~P-v 418 (526)
..++.++.+.+ ....+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. . ..| +
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 45677776553 2334444444334333333333455554432 2888764432 333555566553 1 334 4
Q ss_pred E-EeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 419 V-GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 419 I-~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
| .+............+.|..+++..+.+.+++.++|.+++..
T Consensus 87 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 4 44444322211111567889999999999999999888754
No 174
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=70.67 E-value=16 Score=32.27 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=45.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcccc-----------Cceecccc-----ccCCCc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFY-----------GAKLIGSR-----SFPCPW 182 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~-----------~~~~~~~~-----~~~~~~ 182 (526)
|+|++|..+ | +=....+-..+..+.+.|++|.+++...+...... .....++. .++-..
T Consensus 2 ~~vL~v~aH-P----DDe~l~~ggtia~~~~~G~~v~vv~lT~G~~g~~~~~~~R~~E~~~A~~~lG~~~~~~l~~~D~~ 76 (227)
T 1uan_A 2 LDLLVVAPH-P----DDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPDGG 76 (227)
T ss_dssp EEEEEEESS-T----THHHHHHHHHHHHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTCSEEEEEEECTTC
T ss_pred ceEEEEEeC-C----CcHHHhHHHHHHHHHhCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEECCCCCCC
Confidence 578888653 3 22223333455566678999988876543221100 00111111 111111
Q ss_pred cccccchhcccHHHHHHHHhcCCCEEEECCC
Q 009759 183 YQKVPLSLALSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 183 ~~~~~~~~~~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
+.........+.+++++.+||+|+.+++
T Consensus 77 ---l~~~~~~~~~l~~~ir~~~P~~V~t~~~ 104 (227)
T 1uan_A 77 ---LADVPEQRLKLAQALRRLRPRVVFAPLE 104 (227)
T ss_dssp ---CCCCHHHHHHHHHHHHHHCEEEEEEECS
T ss_pred ---CCChHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 1111234567778888899999988753
No 175
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=70.60 E-value=6.2 Score=32.08 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=55.5
Q ss_pred cEEEEEeccCCCCccCchHH-HHHHHHHHHHHCCCeEEEEEeCCCCCccccC--ceec--cccccCCCcc--ccccc-hh
Q 009759 119 RRIALFVEPSPFSYVSGYKN-RFQNFIKYLREMGDEVMVVTTHEGVPQEFYG--AKLI--GSRSFPCPWY--QKVPL-SL 190 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~-~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~--~~~~--~~~~~~~~~~--~~~~~-~~ 190 (526)
.++++|+ ||.+. -++.+++.|.+.|.+|+++ ........... .+.. .....+.... ..... +.
T Consensus 19 ~~~llIa--------GG~GiaPl~sm~~~l~~~~~~v~l~-g~R~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~d~~~ 89 (142)
T 3lyu_A 19 GKILAIG--------AYTGIVEVYPIAKAWQEIGNDVTTL-HVTFEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANMK 89 (142)
T ss_dssp SEEEEEE--------ETTHHHHHHHHHHHHHHTTCEEEEE-EEEEGGGCCSHHHHHTTSSEEEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEE--------CcCcHHHHHHHHHHHHhcCCcEEEE-EeCCHHHhhHHHHHHHHHhheEEEEeecccccCCCCCCC
Confidence 4788886 45444 3889999999999999998 53321111100 0000 0000000000 00000 00
Q ss_pred ----cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 191 ----ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 191 ----~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
.....+.+.+...+.|.|++..|..+.-......+..++|.+-.-|
T Consensus 90 g~~G~v~~~l~~~~~~~~~~~vy~CGP~~Mm~av~~~l~~~~~~~~~~~~ 139 (142)
T 3lyu_A 90 NVSQRLKEKVRELLESEDWDLVFMVGPVGDQKQVFEVVKEYGVPMLEHHH 139 (142)
T ss_dssp HHHHHHHHHHHHHHHSSCCSEEEEESCHHHHHHHHHHHHHHTCCBC----
T ss_pred CCccchhHHHHHhcccCCCCEEEEECCHHHHHHHHHHHHHcCCchhhhcc
Confidence 0011234444445678899999877766666667788998765443
No 176
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=70.47 E-value=39 Score=26.94 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=64.1
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH---cCCcEEEeC
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGVR 422 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~~ 422 (526)
..+++|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-... +.-|..+++.+. .++|||...
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls 86 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVIS 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 45677776543 3344555555445444433334565555554 4888765442 334556666553 367776542
Q ss_pred -CCCC---CceecccCCC-ceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 423 -AGGI---PDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 423 -~gg~---~e~v~~~~~~-~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
.... .+.+ ..| ..+++..+.+.+++..+|..++...
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 87 GYADAQATIDAV---NRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp CGGGHHHHHHHH---HTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH---hccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 2221 1222 344 6789999999999999999887543
No 177
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=70.45 E-value=21 Score=27.96 Aligned_cols=53 Identities=9% Similarity=0.146 Sum_probs=35.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+||+++.+. ......+...|.+.|++|..+... ....
T Consensus 3 ~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~a~ 40 (140)
T 2qr3_A 3 LGTIIIVDDN---------KGVLTAVQLLLKNHFSKVITLSSP---------------------------------VSLS 40 (140)
T ss_dssp CCEEEEECSC---------HHHHHHHHHHHTTTSSEEEEECCH---------------------------------HHHH
T ss_pred CceEEEEeCC---------HHHHHHHHHHHHhCCcEEEEeCCH---------------------------------HHHH
Confidence 4689888653 245566777888889988744211 2445
Q ss_pred HHHHhcCCCEEEECC
Q 009759 198 SEVARFKPDIIHASS 212 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~ 212 (526)
+.+.+..||+|++..
T Consensus 41 ~~l~~~~~dlvi~d~ 55 (140)
T 2qr3_A 41 TVLREENPEVVLLDM 55 (140)
T ss_dssp HHHHHSCEEEEEEET
T ss_pred HHHHcCCCCEEEEeC
Confidence 566677899999864
No 178
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=70.01 E-value=7.9 Score=36.12 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=58.6
Q ss_pred CcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCC
Q 009759 323 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 402 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e 402 (526)
...|+++|-= .-|-..++.++.+.++++++-+-+ ...+..+.+.+..++.. + +++.+++..+|++++.+...
T Consensus 6 ~~~igiIG~G--~~g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~~~~~--~---~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 6 NIKMGMIGLG--SIAQKAYLPILTKSERFEFVGAFT-PNKVKREKICSDYRIMP--F---DSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CCEEEEECCS--HHHHHHTHHHHTSCSSSEEEEEEC-SCHHHHHHHHHHHTCCB--C---SCHHHHHTTCSEEEECCCGG
T ss_pred cCcEEEEecC--HHHHHHHHHHHHhCCCeEEEEEEC-CCHHHHHHHHHHcCCCC--c---CCHHHHHhcCCEEEEeCCcH
Confidence 3567888741 112234667777888888875554 23444455544434332 2 45666666999999877655
Q ss_pred CCcHHHHHHHHcCCcEEEeC
Q 009759 403 TLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 403 ~~~~~ilEAma~G~PvI~~~ 422 (526)
...-.+.+++..|++|++-+
T Consensus 78 ~h~~~~~~al~~gk~vl~EK 97 (308)
T 3uuw_A 78 THYEIIKILLNLGVHVYVDK 97 (308)
T ss_dssp GHHHHHHHHHHTTCEEEECS
T ss_pred hHHHHHHHHHHCCCcEEEcC
Confidence 55556788999999998753
No 179
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=70.00 E-value=46 Score=27.57 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
...+|||+|=++. +|. ..=..+.+.|.++||+|.=+.+.......+ ..+..
T Consensus 18 ~~~~MkIaIgsDh------aG~-~lK~~i~~~L~~~G~eV~D~G~~~~~~~dY----------------------Pd~a~ 68 (166)
T 3s5p_A 18 GPGSMKVAFASDH------GGR-DLRMFLQQRASAHGYEVMDLGTESDASVDY----------------------PDFAK 68 (166)
T ss_dssp -CTTCEEEEEECG------GGH-HHHHHHHHHHHHTTCEEEEEEC------------------------------CHHHH
T ss_pred CCCceEEEEEECc------hHH-HHHHHHHHHHHHCCCEEEEcCCCCCCCCCH----------------------HHHHH
Confidence 4556999888775 333 344678899999999999887643211111 11234
Q ss_pred HHHHHHHhcCCCE--EEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 195 RIISEVARFKPDI--IHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 195 ~l~~~l~~~~pDi--V~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
...+.+.+.+.|. ++|.+- . +. .+.+-|..|++..+ +||
T Consensus 69 ~va~~V~~g~~d~GIliCGTG-i-G~-sIaANKv~GIRAAl-c~d 109 (166)
T 3s5p_A 69 IGCEAVTSGRADCCILVCGTG-I-GI-SIAANKMKGIRCAL-CST 109 (166)
T ss_dssp HHHHHHHTTSCSEEEEEESSS-H-HH-HHHHHTSTTCCEEE-CSS
T ss_pred HHHHHHHcCCCcEEEEEcCCc-H-HH-HHHhhcCCCeEEEE-eCC
Confidence 5666666667774 444432 1 11 23345666777654 344
No 180
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=69.85 E-value=34 Score=26.48 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-C
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 422 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~-~ 422 (526)
.++.++.+.+ ....++......+..+...-+.++....+.. .|++++-... +.-|..+++.+. .+.|+|.. .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 3566666543 2344444444334333333333455555443 5888765432 334556666553 36777654 3
Q ss_pred CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 423 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 423 ~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
...........+.|..+++..+.+.+++.++|..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 3322211111156788999999999999999988764
No 181
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=69.77 E-value=37 Score=26.38 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=63.2
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEec-ccChhhHHHHHH--cCcEEEecCCC--CCCcHHHHHHHH--cCCcEEEe
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTG-MLLGEELSQAYA--SGDVFVMPSES--ETLGLVVLEAMS--SGIPVVGV 421 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g-~v~~~~l~~~~~--~aDv~v~ps~~--e~~~~~ilEAma--~G~PvI~~ 421 (526)
..+++|+.+.+ ..+.+.......++.+.+ .-+.++....+. ..|++|+-... +.-|..+++.+. .++|+|.-
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~l 88 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFI 88 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 45666766543 233444444433444443 333355555444 35888875443 234555665554 57888754
Q ss_pred -CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 422 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 422 -~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
..... .+.+ +.|..+++..+.+.+++..+|..+++
T Consensus 89 s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 89 TSSQDVETFQRAK---RVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp ECCCCHHHHHHHH---TTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33322 2233 56778999999999999999988875
No 182
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=69.59 E-value=35 Score=26.03 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=63.5
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV- 421 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~- 421 (526)
+.++.++.+.+ ..+.+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. .+.|+|..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 35677777654 2344444444334333333334566666554 4777764432 334566666654 36777654
Q ss_pred CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 422 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 422 ~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
..... .+.+ +.|..+++..+.+.+++.++|..++.
T Consensus 83 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 83 GHGDVPMAVEAM---KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CTTCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHH---HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 33322 2233 56788999999999999999988765
No 183
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=69.57 E-value=38 Score=26.43 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=61.7
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCC-CCCCcHHHHHHHH-----cCCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~-~e~~~~~ilEAma-----~G~PvI~~ 421 (526)
.+++|+.+.+ ....+..+.... ..+...-+.++....+. ..|++|+-.. .+.-|..+++.+. .+.|+|..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 4566666543 344555555544 33333334455555543 3588887544 2334555666665 46787654
Q ss_pred -CCC---CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 422 -RAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 422 -~~g---g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
... ...+.+ +.|..+++..+.+.+++.++|..++...
T Consensus 83 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 83 FSSEHKEAIVNGL---HSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp ECC----CTTTTT---TCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 322 223334 6678899999999999999999887643
No 184
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=69.40 E-value=8.9 Score=38.00 Aligned_cols=95 Identities=5% Similarity=0.059 Sum_probs=48.7
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC-eEEEEEeCCCCCccccCceeccccccCCCccccccchhc
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD-EVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (526)
.....+|||+++.. | .+-..++..|.+.+. +..++.+++....... .. .. ....
T Consensus 16 ~~~p~~m~ilvlG~-------g---gre~ala~~l~~s~~v~~v~~~pgn~g~~~~~--~~-----~~--------i~~~ 70 (442)
T 3lp8_A 16 TQGPGSMNVLVIGS-------G---GREHSMLHHIRKSTLLNKLFIAPGREGMSGLA--DI-----ID--------IDIN 70 (442)
T ss_dssp ----CCEEEEEEEC-------S---HHHHHHHHHHTTCTTEEEEEEEECCGGGTTTS--EE-----CC--------CCTT
T ss_pred cCCCCCCEEEEECC-------C---hHHHHHHHHHHhCCCCCEEEEECCChHHhhcc--ce-----ee--------cCcC
Confidence 44666799999953 2 345678888888753 4444444332111110 10 01 1122
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
....+.+++++.++|+|+............-.....++|++
T Consensus 71 d~~~l~~~a~~~~id~vv~g~E~~l~~~~~~~l~~~Gi~~~ 111 (442)
T 3lp8_A 71 STIEVIQVCKKEKIELVVIGPETPLMNGLSDALTEEGILVF 111 (442)
T ss_dssp CHHHHHHHHHHTTCCEEEECSHHHHHTTHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhcCCcEe
Confidence 34678888899999999984322111011222345677765
No 185
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=69.23 E-value=39 Score=26.40 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=63.0
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-CC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 423 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~-~~ 423 (526)
+++++.+.+ ....++......+..+...-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|.. ..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 566776554 344556655544444433333355555544 36888875442 334566666664 35677644 33
Q ss_pred CCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 424 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 424 gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
... .+.+ +.|..+++..+.+.+++..+|..++.
T Consensus 86 ~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLI---QKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH---HCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 322 2233 56778999999999999999988764
No 186
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=69.19 E-value=22 Score=28.27 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 138 NRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 138 ~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
..-..+++.|.+.|++|.++..+.
T Consensus 16 ~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 16 AAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHHHHHCCCeEEEEECCH
Confidence 466789999999999999987543
No 187
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=69.18 E-value=23 Score=27.75 Aligned_cols=32 Identities=6% Similarity=-0.121 Sum_probs=22.5
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVV 157 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi 157 (526)
+++||+++.+. ......+...|.+ .|++|..+
T Consensus 3 ~~~~ilivdd~---------~~~~~~l~~~L~~~~~~~v~~~ 35 (140)
T 3lua_A 3 LDGTVLLIDYF---------EYEREKTKIIFDNIGEYDFIEV 35 (140)
T ss_dssp CCCEEEEECSC---------HHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEeCC---------HHHHHHHHHHHHhccCccEEEE
Confidence 45799888653 2455667777888 89988844
No 188
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.17 E-value=16 Score=31.32 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=30.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+.|+.. -..-|-.....+|+..|+++|+.|.++-.+.
T Consensus 1 M~vi~v~s~---kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 1 MKVISFLNP---KGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp CEEEEECCS---STTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEeC---CCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 788777652 2223555668999999999999999998764
No 189
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=69.05 E-value=11 Score=33.86 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=24.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||+++|+ ||.+..-..+++.|.++|++|.++..+.
T Consensus 1 mk~vlVT--------Gas~gIG~~~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVIS--------GCATGIGAATRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEE--------TTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEe--------CCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5666665 3333445678899999999998886543
No 190
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=69.03 E-value=8.1 Score=30.62 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=65.3
Q ss_pred cEEEEEeCCc-cHHHHHHHhcC-CCeEEecccChhhHHHHHHc---CcEEEecCCCC--CCcHHHHHHHHc-----CCcE
Q 009759 351 ARIAFIGDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYAS---GDVFVMPSESE--TLGLVVLEAMSS-----GIPV 418 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~-~~V~~~g~v~~~~l~~~~~~---aDv~v~ps~~e--~~~~~ilEAma~-----G~Pv 418 (526)
.+++|+.+.+ ....++....+ .+..+...-+.++....+.. .|++|+-.... .-|..+++.+.. ++||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~i 84 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPV 84 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCE
Confidence 4566666543 33445555544 44444433344566555544 58888755432 335566666554 6788
Q ss_pred EEeCC-CCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 419 VGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 419 I~~~~-gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
|.... ... .+.+ +.|..+++..+.+.+++.++|..+++..
T Consensus 85 i~ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 85 IIATKSDNPGYRHAAL---KFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp EEEESCCCHHHHHHHH---HSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 75433 222 2233 5678899999999999999999998754
No 191
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=69.02 E-value=33 Score=31.02 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=54.0
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+..+|+++.... ...-.......+.+++.+.|+++.++....... ....
T Consensus 3 ~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~~ 52 (291)
T 3l49_A 3 LEGKTIGITAIGT---DHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQ---------------------------TQVS 52 (291)
T ss_dssp CTTCEEEEEESCC---SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHHH
T ss_pred CCCcEEEEEeCCC---CChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHH---------------------------HHHH
Confidence 4456899997632 112234567788888999999999886533210 0113
Q ss_pred HHHHHHhcCCCEEEECCCch-HHHHHHHHHHhcCCCEEEEEe
Q 009759 196 IISEVARFKPDIIHASSPGI-MVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~-~~~~~~~~~~~~~~p~v~~~h 236 (526)
..+.+...++|.|++..... .....+......++|+|+.-.
T Consensus 53 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 53 QIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecC
Confidence 33444456899988765432 222233344567999887533
No 192
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=68.96 E-value=30 Score=27.68 Aligned_cols=32 Identities=6% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
+++||+++.+. ......+...|.+.|++|..+
T Consensus 6 ~~~~iLivdd~---------~~~~~~l~~~L~~~g~~v~~~ 37 (154)
T 2rjn_A 6 KNYTVMLVDDE---------QPILNSLKRLIKRLGCNIITF 37 (154)
T ss_dssp SCCEEEEECSC---------HHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCeEEEEcCC---------HHHHHHHHHHHHHcCCeEEEe
Confidence 45799888653 245567777888889988744
No 193
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=68.95 E-value=23 Score=26.88 Aligned_cols=30 Identities=13% Similarity=0.043 Sum_probs=21.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
+||+++.+. ......+.+.|.+.|++|..+
T Consensus 6 ~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~ 35 (127)
T 2gkg_A 6 KKILIVESD---------TALSATLRSALEGRGFTVDET 35 (127)
T ss_dssp CEEEEECSC---------HHHHHHHHHHHHHHTCEEEEE
T ss_pred CeEEEEeCC---------HHHHHHHHHHHHhcCceEEEe
Confidence 689888653 245567777888889988644
No 194
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=68.92 E-value=30 Score=30.43 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHCC-CeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMG-DEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G-~~V~vi~~~~ 161 (526)
||.+..-..+++.|.+.| ++|.++..+.
T Consensus 30 GatG~iG~~l~~~L~~~G~~~V~~~~R~~ 58 (236)
T 3qvo_A 30 GAGGQIARHVINQLADKQTIKQTLFARQP 58 (236)
T ss_dssp TTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred eCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence 344445567899999999 8999887654
No 195
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=68.88 E-value=62 Score=29.20 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=48.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+..+|+++.... ...-.......+.+++.+.|+++.+........ ....
T Consensus 6 ~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~~ 55 (290)
T 2rgy_A 6 QQLGIIGLFVPTF---FGSYYGTILKQTDLELRAVHRHVVVATGCGEST---------------------------PREQ 55 (290)
T ss_dssp --CCEEEEECSCS---CSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSC---------------------------HHHH
T ss_pred CCCCeEEEEeCCC---CCchHHHHHHHHHHHHHHCCCEEEEEeCCCchh---------------------------hhhh
Confidence 3446898886431 111234556677788889999988764432110 0012
Q ss_pred ---HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 196 ---IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 196 ---l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
..+.+...++|.|++....... ..+......++|+|+.-
T Consensus 56 ~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 56 ALEAVRFLIGRDCDGVVVISHDLHD-EDLDELHRMHPKMVFLN 97 (290)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSSCH-HHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHhcCccEEEEecCCCCH-HHHHHHhhcCCCEEEEc
Confidence 3444455689988886532211 11222344689988753
No 196
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=68.84 E-value=18 Score=33.36 Aligned_cols=44 Identities=9% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.++.|++.|+.. -..-|-.....+||..|++.|..|.++-.+..
T Consensus 89 ~~~~kvI~vts~---kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 89 QAQNNVLMMTGV---SPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TTTCCEEEEEES---SSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCCCeEEEEECC---CCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 344677777653 22346677789999999999999999986543
No 197
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=68.81 E-value=6.1 Score=34.50 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=29.0
Q ss_pred CCcEEEEEeccCCCCccCchHHH--HHHHHHHHHHCCCeEEEEEeCCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNR--FQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~--~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
+.+||++... ||+..+ ...+++.|++.|++|.++.+...
T Consensus 4 ~~k~IllgiT-------Gsiaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 4 KGKRIGFGFT-------GSHCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TTCEEEEEEC-------SCGGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCCEEEEEEE-------ChHHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 3468877765 444444 78999999999999999987654
No 198
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=68.79 E-value=8 Score=37.17 Aligned_cols=96 Identities=9% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
.+..++|||+++.. |+.+. .+++.|.+ .++|++........+..... .........-
T Consensus 11 ~~~g~~mkilvlGa-------G~vG~---~~~~~L~~-~~~v~~~~~~~~~~~~~~~~------------~~~~~~d~~d 67 (365)
T 3abi_A 11 HIEGRHMKVLILGA-------GNIGR---AIAWDLKD-EFDVYIGDVNNENLEKVKEF------------ATPLKVDASN 67 (365)
T ss_dssp -----CCEEEEECC-------SHHHH---HHHHHHTT-TSEEEEEESCHHHHHHHTTT------------SEEEECCTTC
T ss_pred cccCCccEEEEECC-------CHHHH---HHHHHHhc-CCCeEEEEcCHHHHHHHhcc------------CCcEEEecCC
Confidence 35788899998832 34433 45666655 58998876432211110000 0001111122
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
...+.+.++ +.|+|+...+..........+...|+.++-
T Consensus 68 ~~~l~~~~~--~~DvVi~~~p~~~~~~v~~~~~~~g~~yvD 106 (365)
T 3abi_A 68 FDKLVEVMK--EFELVIGALPGFLGFKSIKAAIKSKVDMVD 106 (365)
T ss_dssp HHHHHHHHT--TCSEEEECCCGGGHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHh--CCCEEEEecCCcccchHHHHHHhcCcceEe
Confidence 345666666 679999887766555555566667877653
No 199
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=68.79 E-value=28 Score=27.80 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=63.8
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCe--EEecccChhhHHHHHH-----------cCcEEEecCC-CCCCcHHHHHHHHc-
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYA-----------SGDVFVMPSE-SETLGLVVLEAMSS- 414 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V--~~~g~v~~~~l~~~~~-----------~aDv~v~ps~-~e~~~~~ilEAma~- 414 (526)
.+++|+.+.+ ....++......+. .+...-+.++..+.+. ..|++|+-.. .+.-|..+++.+..
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 4667776543 33444444443322 3333334466666663 3588877544 34556777777764
Q ss_pred ----CCcEEEeCC-CCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 415 ----GIPVVGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 415 ----G~PvI~~~~-gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
++|+|.... ... .+.+ +.|..+++..+.+.+++.++|.++.
T Consensus 85 ~~~~~~pii~~t~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 85 PHTRRSPVVILTTTDDQREIQRCY---DLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCCHHHHHHHH---HCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 567765433 221 2233 5678899999999999999998873
No 200
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=68.74 E-value=35 Score=26.61 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=62.6
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~~ 421 (526)
.++.|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+.. .+|||..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~l 83 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLML 83 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 3566666543 2344444444344444333344555555544 588876544 23456777777753 5777654
Q ss_pred -CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 -RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 -~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
..............+..+++..+.+.+++.++|..++..
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 333221111111223468999999999999999988764
No 201
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=68.70 E-value=28 Score=26.59 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=64.8
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI~~ 421 (526)
.+++|+.+.+ ..+.+.......+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+.. ++|+|..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 4666776543 3455555555555554444444666666654 478776543 34456677776653 4677654
Q ss_pred C-CCCC--CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 R-AGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 ~-~gg~--~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
. .... ...+ ..|..+++..+-+.++|.+++......
T Consensus 84 s~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 84 SGFAKNDLGKEA---CELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp ECC-CTTCCHHH---HHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred ECCcchhHHHHH---HHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 2 2222 2233 456778999999999999999887654
No 202
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=68.69 E-value=43 Score=26.70 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=61.5
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH---cCCcEEEeCC
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA 423 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~~~ 423 (526)
.+++|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+. ..+|||....
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 4555555432 3344455554444333333333455544443 477776544 3444666666554 4677775433
Q ss_pred CCCC----ceecccCCC-ceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 424 GGIP----DIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 424 gg~~----e~v~~~~~~-~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
..-. +.+ ..| ..+++..+.+.++|..+|..++..
T Consensus 95 ~~~~~~~~~~~---~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 95 DPDLKLIAKAI---NEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CCCHHHHHHHH---HTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 2221 223 456 678999999999999999988763
No 203
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=68.67 E-value=26 Score=27.03 Aligned_cols=111 Identities=19% Similarity=0.277 Sum_probs=63.0
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeE-EecccChhhHHHHHH---cCcEEEecCC-CCCCcHHHHHHHHc-----CCcE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAV-FTGMLLGEELSQAYA---SGDVFVMPSE-SETLGLVVLEAMSS-----GIPV 418 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~-~~g~v~~~~l~~~~~---~aDv~v~ps~-~e~~~~~ilEAma~-----G~Pv 418 (526)
..++.++.+.+ ..+.++......+.. +...-+..+....+. ..|++++-.. .+.-|..+++.+.. .+||
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pi 84 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPI 84 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeE
Confidence 34667776543 334455544433321 222223344444332 3688876443 34457778887753 5677
Q ss_pred EEeC-CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 419 VGVR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 419 I~~~-~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
|... ...........+.|..+++..+-+.+++.++|..++..
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 85 IMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 6543 33222111111567889999999999999999988753
No 204
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=68.57 E-value=7.4 Score=30.11 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=31.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CC-eEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GD-EVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~-~V~vi~~~~~ 162 (526)
||++++....|+. .........++..+.+. |+ +|.++..+++
T Consensus 2 ~k~~ii~~~~p~~--~~~~~~al~~a~~~~~~~g~~~v~vff~~dg 45 (117)
T 1jx7_A 2 QKIVIVANGAPYG--SESLFNSLRLAIALREQESNLDLRLFLMSDA 45 (117)
T ss_dssp CEEEEEECCCTTT--CSHHHHHHHHHHHHHHHCTTCEEEEEECGGG
T ss_pred cEEEEEEcCCCCC--cHHHHHHHHHHHHHHhcCCCccEEEEEEchH
Confidence 4899998876642 33445578999999999 99 9999987654
No 205
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=68.01 E-value=7 Score=33.96 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=30.1
Q ss_pred CCCcEEEEEeccCCCCccCchH-H-HHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYK-N-RFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~-~-~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.+.+||++-.. ||.. . ....+++.|++.|++|.++.+...
T Consensus 5 l~~k~I~lgiT-------Gs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 5 FAGKHVGFGLT-------GSHCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp CTTCEEEEECC-------SCGGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred cCCCEEEEEEE-------ChHHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 44568877754 3333 3 589999999999999999987653
No 206
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=67.93 E-value=26 Score=27.91 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=62.8
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeE-EecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH-----cCCcEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAV-FTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVV 419 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~-~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma-----~G~PvI 419 (526)
+.++.|+=+.+ ....++...+..+.. ..-.-+..+..+.+.. -|++++=.. -+.-|.-+++.+. ..+|||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI 91 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVL 91 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEE
Confidence 45666665543 233444444433322 1111222444444443 478776433 2445777887774 457887
Q ss_pred Ee-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 420 GV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 420 ~~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.- ..+...+.....+.|.++++..|-+.+++.++|.++++
T Consensus 92 ~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 92 MITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 54 33333322211256889999999999999999988864
No 207
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=67.89 E-value=15 Score=34.77 Aligned_cols=99 Identities=7% Similarity=-0.069 Sum_probs=53.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc-ccc---CceeccccccCCCccccccchhccc
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ-EFY---GAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
+|||++. ||.+..-..+++.|.+.||+|.+++....... ... .....++..+ ...+.-.
T Consensus 10 ~~~IlVt---------GatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~--------~~Dl~d~ 72 (346)
T 3i6i_A 10 KGRVLIA---------GATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIV--------YGLINEQ 72 (346)
T ss_dssp -CCEEEE---------CTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEE--------ECCTTCH
T ss_pred CCeEEEE---------CCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEE--------EeecCCH
Confidence 4678666 44445556788899999999999987542211 000 0000011111 1112224
Q ss_pred HHHHHHHHhcCCCEEEECCCch---HHHHHHHHHHhcC-CCEEE
Q 009759 194 PRIISEVARFKPDIIHASSPGI---MVFGALIIAKLLC-VPIVM 233 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~---~~~~~~~~~~~~~-~p~v~ 233 (526)
..+.+.+++.++|+|+...... .....+-+++..+ ++.++
T Consensus 73 ~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v 116 (346)
T 3i6i_A 73 EAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFL 116 (346)
T ss_dssp HHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence 5677778777899887754321 1222333455566 77665
No 208
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=67.85 E-value=19 Score=35.27 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=44.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+++||+|+... .....+.++.+++|++|+++.............. . ..+..+.+.. .-....
T Consensus 2 ~~~~k~l~Il~~~----------~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~-d--~~~~~~~~~d---~~~~~~ 65 (425)
T 3vot_A 2 TKRNKNLAIICQN----------KHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAV-E--RCVPLPLFED---EEAAMD 65 (425)
T ss_dssp CCCCCEEEEECCC----------TTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTE-E--EEEEECTTTC---HHHHHH
T ss_pred CCCCcEEEEECCC----------hhHHHHHHHHHHCCCEEEEEECCCcccccCHhhc-c--EEEecCCCCC---HHHHHH
Confidence 4566788888542 1233567888999999999987654322111000 0 0111111111 111234
Q ss_pred HHHHHHHhcCCCEEEECC
Q 009759 195 RIISEVARFKPDIIHASS 212 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~ 212 (526)
.+.++.++.++|.|+...
T Consensus 66 ~~~~~~~~~~id~V~~~~ 83 (425)
T 3vot_A 66 VVRQTFVEFPFDGVMTLF 83 (425)
T ss_dssp HHHHHHHHSCCSEEECCC
T ss_pred HHHHhhhhcCCCEEEECC
Confidence 566667778899888754
No 209
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=67.79 E-value=40 Score=26.16 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=65.6
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC------CCCcHHHHHHHH---cCCcE
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES------ETLGLVVLEAMS---SGIPV 418 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~------e~~~~~ilEAma---~G~Pv 418 (526)
.+++|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-... +.-|..+++.+. .++|+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 4667777543 3455666666555444444444666666654 4777764432 334556666554 46787
Q ss_pred EEeC-CCC---CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 419 VGVR-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 419 I~~~-~gg---~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
|... ... ..+.+ +.|..+++..+.+.+++.++|..++..
T Consensus 84 i~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 84 VLFTAYADIDLAVRGI---KEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp EEEEEGGGHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHH---HcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 6542 222 12233 567789999999999999999998864
No 210
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=67.78 E-value=37 Score=26.45 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=63.2
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcC-CCeE-EecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHHc-----CCcE
Q 009759 350 EARIAFIGDGP-YREELEKMFTG-MPAV-FTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPV 418 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~-~~V~-~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma~-----G~Pv 418 (526)
..+++|+.+.+ ....+...... .+.. +...-+.++....+.. .|++|+-... +.-|..+++.+.. ++|+
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 35666776543 23344444443 3332 2222223555555543 5888775443 4456677777754 5677
Q ss_pred EEe-CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 419 VGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 419 I~~-~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
|.. ..... .+.+ +.|..+++..+.+.+++.++|..+++.
T Consensus 88 i~~s~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIV---ALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 654 33322 2233 567789999999999999999988764
No 211
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=67.73 E-value=38 Score=29.97 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
...+|||+++.+. ......+...|...|++|..+... .
T Consensus 20 ~~~~~~ILivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~ 57 (250)
T 3r0j_A 20 TTPEARVLVVDDE---------ANIVELLSVSLKFQGFEVYTATNG---------------------------------A 57 (250)
T ss_dssp CCSSCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------H
T ss_pred CCCCceEEEEECC---------HHHHHHHHHHHHHCCCEEEEECCH---------------------------------H
Confidence 3456899888663 245566777888889988743211 2
Q ss_pred HHHHHHHhcCCCEEEECC--CchHHHHHH--HHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASS--PGIMVFGAL--IIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~--~~~~~~~~~--~~~~~~~~p~v~~~h 236 (526)
...+.+.+..||+|++.. +...++..+ +......+|+|+...
T Consensus 58 ~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 103 (250)
T 3r0j_A 58 QALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTA 103 (250)
T ss_dssp HHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEC
Confidence 445556677999999863 222232222 222234678776543
No 212
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=67.60 E-value=33 Score=26.18 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=60.3
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCe-EEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHHc-----CCcEEE
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVG 420 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V-~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma~-----G~PvI~ 420 (526)
.++.++.+.+ ....+.......+. .+...-+.++....+.. .|++++-... +.-|..+++.+.. .+|+|.
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~ 84 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLM 84 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEE
Confidence 4566666543 23334444433322 12222223455555543 4887764432 3456777777764 467765
Q ss_pred e-CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 421 V-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 421 ~-~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
. ..... .+.+ +.|..+++..+.+.+++.++|.+++.
T Consensus 85 ~s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 85 VTAEAKKENIIAAA---QAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHH---HhCcCceeecCCCHHHHHHHHHHHHH
Confidence 4 33322 2233 56778999999999999999988753
No 213
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=67.52 E-value=21 Score=28.75 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
.+++|+++.+. ......+.+.|.+.|++|..+
T Consensus 2 ~~~~ILivdd~---------~~~~~~l~~~L~~~g~~v~~~ 33 (155)
T 1qkk_A 2 AAPSVFLIDDD---------RDLRKAMQQTLELAGFTVSSF 33 (155)
T ss_dssp --CEEEEECSC---------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEeCC---------HHHHHHHHHHHHHcCcEEEEE
Confidence 35799888653 245667778888899988754
No 214
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=67.45 E-value=17 Score=33.80 Aligned_cols=86 Identities=7% Similarity=0.105 Sum_probs=48.3
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.++|||+++.+. .| .-+..|+.+.+.- +.+|..+..+....... ....+++.+..+... .....+-
T Consensus 103 ~~~~ri~vl~Sg------~g--~nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~--A~~~gIp~~~~~~~~--~~r~~~~ 170 (302)
T 3o1l_A 103 AQKKRVVLMASR------ES--HCLADLLHRWHSDELDCDIACVISNHQDLRSM--VEWHDIPYYHVPVDP--KDKEPAF 170 (302)
T ss_dssp TSCCEEEEEECS------CC--HHHHHHHHHHHTTCSCSEEEEEEESSSTTHHH--HHTTTCCEEECCCCS--SCCHHHH
T ss_pred CCCcEEEEEEeC------Cc--hhHHHHHHHHHCCCCCcEEEEEEECcHHHHHH--HHHcCCCEEEcCCCc--CCHHHHH
Confidence 346899998752 22 3566777766543 46888877765433221 111222222221110 0111223
Q ss_pred HHHHHHHHhcCCCEEEECCC
Q 009759 194 PRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~ 213 (526)
..+.+.+++.+||+|++-.+
T Consensus 171 ~~~~~~l~~~~~DliVlagy 190 (302)
T 3o1l_A 171 AEVSRLVGHHQADVVVLARY 190 (302)
T ss_dssp HHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHHHhCCCEEEHhHh
Confidence 46788999999999999775
No 215
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=67.13 E-value=34 Score=26.58 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=63.9
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCC-CCCCcHHHHHHHHc---CCcEEEeCC
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGVRA 423 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~-~e~~~~~ilEAma~---G~PvI~~~~ 423 (526)
.+++|+.+.+ ....+.....+....+...-+.++....+. ..|++|+-.. .+.-|..+++.+.. ..|+|....
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEec
Confidence 5677777543 334455555544322222223355555544 3588887544 34456666666553 577776533
Q ss_pred CCC----CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 424 GGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 424 gg~----~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
..- .+.+ +.|..+++..+.+.+++.++|.++++.
T Consensus 88 ~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 88 FSEMKYFIKAI---ELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCHHHHHHHH---HHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 222 1233 557788999999999999999998764
No 216
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=66.88 E-value=6.4 Score=34.28 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=25.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++. ||.+..-..+++.|.++|++|.++....
T Consensus 1 MkvlVt---------GatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGII---------GATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEE---------cCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 788666 3444455678899999999999997654
No 217
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=66.86 E-value=72 Score=28.61 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=47.8
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+..+|+++.... ...-.......+-+++.+.|+++.+....... . ....
T Consensus 5 ~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~--------------------------~~~~ 54 (289)
T 1dbq_A 5 NHTKSIGLLATSS---EAAYFAEIIEAVEKNCFQKGYTLILGNAWNNL-E--------------------------KQRA 54 (289)
T ss_dssp ---CEEEEEESCT---TSHHHHHHHHHHHHHHHHHTCEEEEEECTTCH-H--------------------------HHHH
T ss_pred CCCCEEEEEeCCC---CChHHHHHHHHHHHHHHHcCCeEEEEcCCCCh-H--------------------------HHHH
Confidence 3446898887531 11223445667777788889999886432210 0 0112
Q ss_pred HHHHHHhcCCCEEEECCCch-HHHHHHHHHHhcCCCEEEEEec
Q 009759 196 IISEVARFKPDIIHASSPGI-MVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
..+.+...++|.|++..... .... -.+.+..++|+|+.-..
T Consensus 55 ~~~~l~~~~vdgii~~~~~~~~~~~-~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 55 YLSMMAQKRVDGLLVMCSEYPEPLL-AMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHTTCSEEEEECSCCCHHHH-HHHHHTTTSCEEEEECS
T ss_pred HHHHHHhCCCCEEEEEeccCCHHHH-HHHHhccCCCEEEEccC
Confidence 33344456899887754322 1111 12223368998876443
No 218
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=66.85 E-value=20 Score=26.76 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=61.3
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH-----cCCcEEEe-
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGV- 421 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma-----~G~PvI~~- 421 (526)
++.++.+.+ ..+.+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. .++|+|..
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 456666543 3344455444444444433344555554443 5888765442 345667777775 45677643
Q ss_pred CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 422 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
......+.. ..|..+++..+.+.+++.++|..++.
T Consensus 83 ~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLL---TAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHH---HHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhh---hcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 333222444 55677888888899999999987754
No 219
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=66.68 E-value=45 Score=26.25 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH-------cCCc
Q 009759 349 PEARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-------SGIP 417 (526)
Q Consensus 349 ~~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma-------~G~P 417 (526)
...++.|+.+.+ ....+..+....+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+|
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~p 92 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTP 92 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCe
Confidence 346777777653 3445555555544443333344555555543 588887544 3445667777664 2367
Q ss_pred EEEeCCCCCCcee-cccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 418 VVGVRAGGIPDII-PEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 418 vI~~~~gg~~e~v-~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
+|........+.. ...+.|..+++..+.+.+++.++|.++...
T Consensus 93 ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 93 VVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 7755333222211 111567889999999999999999988643
No 220
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=66.57 E-value=19 Score=33.93 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=50.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
++|||++|.. |... ...+++.|...|++|..++........... . .++. ......+
T Consensus 3 ~~~rvgiiG~-------G~~~--~~~~~~~l~~~~~~lvav~d~~~~~~~~~a-~-----~~~~---------~~~~~~~ 58 (336)
T 2p2s_A 3 KKIRFAAIGL-------AHNH--IYDMCQQLIDAGAELAGVFESDSDNRAKFT-S-----LFPS---------VPFAASA 58 (336)
T ss_dssp -CCEEEEECC-------SSTH--HHHHHHHHHHTTCEEEEEECSCTTSCHHHH-H-----HSTT---------CCBCSCH
T ss_pred CccEEEEECC-------ChHH--HHHhhhhhcCCCcEEEEEeCCCHHHHHHHH-H-----hcCC---------CcccCCH
Confidence 4589999953 2111 223456666678888766654332111000 0 0000 0011245
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+++...++|+|++..+..........+-..|+++++
T Consensus 59 ~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~ 95 (336)
T 2p2s_A 59 EQLITDASIDLIACAVIPCDRAELALRTLDAGKDFFT 95 (336)
T ss_dssp HHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHhhCCCCCEEEEeCChhhHHHHHHHHHHCCCcEEE
Confidence 5667667899999998866655555555566776654
No 221
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=66.50 E-value=27 Score=26.50 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=59.9
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHHc-----CCcEEEeC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS-----GIPVVGVR 422 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma~-----G~PvI~~~ 422 (526)
++.++.+.+ ..+.++......+..+...-+.++....+. ..|++++-... +.-|..+++.+.. .+|+|...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 455666543 234444444433444433333345544443 35888865432 3446667777653 57877543
Q ss_pred C-CCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 423 A-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 423 ~-gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
. ... .+.+ +.|..+++..+.+.+++.++|..++.
T Consensus 83 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 83 AFAMKGDEERIR---EGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp ------CHHHHH---HHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHH---hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2 221 2223 45778999999999999999988764
No 222
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=66.45 E-value=41 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=34.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
+||+++.+. ......+...|.+.|++|...... ....+
T Consensus 3 ~~ILivdd~---------~~~~~~l~~~l~~~g~~v~~~~~~---------------------------------~~al~ 40 (122)
T 3gl9_A 3 KKVLLVDDS---------AVLRKIVSFNLKKEGYEVIEAENG---------------------------------QIALE 40 (122)
T ss_dssp CEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------HHHHH
T ss_pred ceEEEEeCC---------HHHHHHHHHHHHHCCcEEEEeCCH---------------------------------HHHHH
Confidence 588888653 144556777888889988743211 24455
Q ss_pred HHHhcCCCEEEECC
Q 009759 199 EVARFKPDIIHASS 212 (526)
Q Consensus 199 ~l~~~~pDiV~~~~ 212 (526)
.+++.+||+|++..
T Consensus 41 ~l~~~~~dlvllD~ 54 (122)
T 3gl9_A 41 KLSEFTPDLIVLXI 54 (122)
T ss_dssp HHTTBCCSEEEECS
T ss_pred HHHhcCCCEEEEec
Confidence 56677999999854
No 223
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=66.44 E-value=13 Score=35.50 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+.++|+|++..+..........+...|+++++
T Consensus 59 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~ 97 (359)
T 3m2t_A 59 NVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFV 97 (359)
T ss_dssp SHHHHHHHSCCSEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEE
Confidence 456677777899999998866655555555666777664
No 224
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=66.33 E-value=31 Score=32.57 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=59.6
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 401 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~ 401 (526)
..|+++|-=. -| ..++.++...++++++-+-+ ...+..+.+.+..++... +++.+++. .+|++++.+..
T Consensus 5 ~rvgiiG~G~--~g-~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~g~~~~-----~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGR--IG-HVHAANIAANPDLELVVIAD-PFIEGAQRLAEANGAEAV-----ASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSH--HH-HHHHHHHHHCTTEEEEEEEC-SSHHHHHHHHHTTTCEEE-----SSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcH--HH-HHHHHHHHhCCCcEEEEEEC-CCHHHHHHHHHHcCCcee-----CCHHHHhcCCCCCEEEEeCCc
Confidence 4577777411 12 24667777788888775544 334555666666554332 46677787 78999987765
Q ss_pred CCCcHHHHHHHHcCCcEEEeC
Q 009759 402 ETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~ 422 (526)
....-.+.+|+..|++|++-+
T Consensus 76 ~~h~~~~~~al~~gk~v~~EK 96 (344)
T 3euw_A 76 STHVDLITRAVERGIPALCEK 96 (344)
T ss_dssp GGHHHHHHHHHHTTCCEEECS
T ss_pred hhhHHHHHHHHHcCCcEEEEC
Confidence 555556788999999999754
No 225
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=65.99 E-value=7.3 Score=31.44 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=32.7
Q ss_pred Cc-EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 118 PR-RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 118 ~m-kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.| |++|+....|+ ..-.....+.++.++.+.|++|.|+...++
T Consensus 4 ~Mkk~~ivv~~~P~--g~~~~~~al~~a~a~~a~~~~v~Vff~~DG 47 (136)
T 2hy5_B 4 VVKKFMYLNRKAPY--GTIYAWEALEVVLIGAAFDQDVCVLFLDDG 47 (136)
T ss_dssp -CCEEEEEECSCTT--TSSHHHHHHHHHHHHGGGCCEEEEEECGGG
T ss_pred chhEEEEEEeCCCC--CcHHHHHHHHHHHHHHhCCCCEEEEEEhHH
Confidence 36 59999887664 233556689999999999999999987654
No 226
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=65.99 E-value=6.9 Score=35.35 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
..++||||+--+. |=.+.-+..|+++|.+ +++|+|+++..+
T Consensus 8 ~~~~m~ILlTNDD------Gi~apGi~aL~~~l~~-~~~V~VVAP~~~ 48 (261)
T 3ty2_A 8 ATPKLRLLLSNDD------GVYAKGLAILAKTLAD-LGEVDVVAPDRN 48 (261)
T ss_dssp ---CCEEEEECSS------CTTCHHHHHHHHHHTT-TSEEEEEEESSC
T ss_pred cCCCCeEEEEcCC------CCCCHHHHHHHHHHHh-cCCEEEEecCCC
Confidence 4455999666442 2234568889999988 789999998754
No 227
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=65.75 E-value=6.7 Score=34.30 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=25.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++. ||.+..-..+++.|.++|++|.++....
T Consensus 1 MkilVt---------GatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVL---------GATGRAGSAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp CEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEE---------cCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 787665 4444556778999999999999997643
No 228
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=65.55 E-value=29 Score=28.98 Aligned_cols=77 Identities=9% Similarity=-0.051 Sum_probs=44.3
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.++||+++.+. ......+...|.+.|++|..+... ...
T Consensus 6 ~~~~iLivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~a 43 (184)
T 3rqi_A 6 SDKNFLVIDDN---------EVFAGTLARGLERRGYAVRQAHNK---------------------------------DEA 43 (184)
T ss_dssp -CCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEECSH---------------------------------HHH
T ss_pred CCCeEEEEcCC---------HHHHHHHHHHHHHCCCEEEEeCCH---------------------------------HHH
Confidence 34789888653 245566777888889987544221 244
Q ss_pred HHHHHhcCCCEEEECC--CchHHH--HHHHHHHhcCCCEEEEE
Q 009759 197 ISEVARFKPDIIHASS--PGIMVF--GALIIAKLLCVPIVMSY 235 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~--~~~~~~--~~~~~~~~~~~p~v~~~ 235 (526)
.+.+.+..||+|++.. +...++ ...+......+|+|+..
T Consensus 44 l~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 44 LKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp HHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 4556677899999864 222222 22222233467766543
No 229
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=65.52 E-value=21 Score=33.48 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.+.|++|.++....
T Consensus 28 GatG~iG~~l~~~L~~~g~~V~~~~r~~ 55 (333)
T 2q1w_A 28 GICGQIGSHIAELLLERGDKVVGIDNFA 55 (333)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4444555678899999999999987543
No 230
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=65.51 E-value=22 Score=35.09 Aligned_cols=93 Identities=9% Similarity=-0.054 Sum_probs=50.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
...+|||+++.. | .+...++..+++ .|+++.++.+.+...... ... +. ......
T Consensus 18 ~~~~~~iliiG~--------g--~r~~a~a~~~~~~~g~~~v~~~~~~~~~~~~--~~~-----~~--------~~~~d~ 72 (451)
T 2yrx_A 18 FQSHMNVLVIGR--------G--GREHAIAWKAAQSPLVGKLYVAPGNPGIADV--AEL-----VH--------IDELDI 72 (451)
T ss_dssp CCSSEEEEEEEC--------S--HHHHHHHHHHHTCTTEEEEEEEECCTTGGGT--SEE-----CC--------CCTTCH
T ss_pred cCCCCEEEEECC--------C--HHHHHHHHHHHhcCCCCEEEEECCChhhhhh--Cce-----ec--------cCCCCH
Confidence 445689988853 2 234566777755 588887776643221110 010 11 112234
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
..+.+++++.++|+|+..................++|++
T Consensus 73 ~~l~~~~~~~~~d~vi~~~E~~~~~~~~~~l~~~gi~~~ 111 (451)
T 2yrx_A 73 EALVQFAKQQAIDLTIVGPEAPLASGIVDRFMAEGLRIF 111 (451)
T ss_dssp HHHHHHHHHTTCSEEEECSHHHHHTTHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHCCCCEe
Confidence 578888888999999985422211111122245677764
No 231
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=65.51 E-value=28 Score=32.21 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.+++||+.|+.. ...-|-.....+|+..|++.|..|.++-.+.
T Consensus 101 ~~~~kvI~vts~---kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 101 ETENNILMITGA---TPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCSCCEEEEEES---SSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCeEEEEECC---CCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 345677777653 2234667788999999999999999998654
No 232
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=65.43 E-value=13 Score=29.71 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=32.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
..+|++|+....|+ ..........++....+.||+|.++...++
T Consensus 14 ~~~kl~ii~~sgP~--~~~~~~~al~lA~~A~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 14 QXXXILIVVTHGPE--DLDRTYAPLFMASISASMEYETSVFFMIXG 57 (134)
T ss_dssp CCCEEEEEECCCGG--GTHHHHHHHHHHHHHHHTTCEEEEEECTTG
T ss_pred ccceEEEEEccCCC--CHHHHHHHHHHHHHHHHCCCCEEEEEEeCc
Confidence 34689888776442 234556678889999999999999987765
No 233
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=65.42 E-value=23 Score=33.28 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=58.2
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 401 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~ 401 (526)
..|+++|-=. -| ..++.++.+.++++++-+-+ ...+..+.+.+..++. + +++.+++. .+|++++.+..
T Consensus 4 ~~vgiiG~G~--~g-~~~~~~l~~~~~~~l~av~d-~~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGR--IG-KVHAKAVSGNADARLVAVAD-AFPAAAEAIAGAYGCE---V---RTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSH--HH-HHHHHHHHHCTTEEEEEEEC-SSHHHHHHHHHHTTCE---E---CCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCH--HH-HHHHHHHhhCCCcEEEEEEC-CCHHHHHHHHHHhCCC---c---CCHHHHhcCCCCCEEEEeCCc
Confidence 3467776411 11 24666777778888775544 3345555665555655 2 46667777 78999987765
Q ss_pred CCCcHHHHHHHHcCCcEEEeC
Q 009759 402 ETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~ 422 (526)
....-.+.+++..|++|++-+
T Consensus 74 ~~h~~~~~~al~~gk~v~~EK 94 (331)
T 4hkt_A 74 DTHADLIERFARAGKAIFCEK 94 (331)
T ss_dssp GGHHHHHHHHHHTTCEEEECS
T ss_pred hhHHHHHHHHHHcCCcEEEec
Confidence 555556788999999999754
No 234
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=65.36 E-value=4.9 Score=34.74 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=40.4
Q ss_pred HHHHHcCcEEEecCCCCCCcH--HHHHHHHcCCcEEEeCCCC-CCceeccc-------CCCceeEeeCCCCHHHHHHHHH
Q 009759 386 SQAYASGDVFVMPSESETLGL--VVLEAMSSGIPVVGVRAGG-IPDIIPED-------QDGKIGYLFNPGDLDDCLSKLE 455 (526)
Q Consensus 386 ~~~~~~aDv~v~ps~~e~~~~--~ilEAma~G~PvI~~~~gg-~~e~v~~~-------~~~~~g~~~~~~d~~~la~ai~ 455 (526)
.-+...||.+|..- .++|. .+.|++..|+||++-+..+ ..+.+... .......+.-.+|++++.+.|.
T Consensus 113 ~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~ 190 (195)
T 1rcu_A 113 FVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIE 190 (195)
T ss_dssp HHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHH
T ss_pred HHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHH
Confidence 34566788877532 23442 5788999999999986543 22222100 1112222333458999988886
Q ss_pred Hhh
Q 009759 456 PLL 458 (526)
Q Consensus 456 ~ll 458 (526)
+++
T Consensus 191 ~~~ 193 (195)
T 1rcu_A 191 QIL 193 (195)
T ss_dssp TC-
T ss_pred HHh
Confidence 543
No 235
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=65.24 E-value=23 Score=34.47 Aligned_cols=88 Identities=9% Similarity=-0.009 Sum_probs=49.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
|||+++.. | .+...++..|++ .|+++.++.+.+...... ... +. .......+.
T Consensus 1 mkililG~--------g--~r~~a~a~~l~~~~g~~~v~~~~~~~~~~~~--~~~-----~~---------~~~d~~~l~ 54 (417)
T 2ip4_A 1 MKVLVVGS--------G--GREHALLWKAAQSPRVKRLYAAPGNAGMEAL--AEL-----VP---------WNGDVEALA 54 (417)
T ss_dssp CEEEEEES--------S--HHHHHHHHHHHTCSSCCEEEEEECCTTGGGT--SEE-----CC---------CCSCHHHHH
T ss_pred CEEEEECC--------C--HHHHHHHHHHHhCCCCCEEEEECCCcchhhh--ccc-----CC---------CccCHHHHH
Confidence 78988853 2 235778888865 589988887643211110 010 11 122345778
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+++++.++|+|+..................++|++
T Consensus 55 ~~~~~~~~d~v~~~~E~~~~~~~~~~l~~~gi~~~ 89 (417)
T 2ip4_A 55 DWALAEGIDLTLVGPEAPLVEGIADAFQARGLLLF 89 (417)
T ss_dssp HHHHHHTCCEEEECSSHHHHTTHHHHHHHHTCCEE
T ss_pred HHHHHcCCCEEEECCchHHHHHHHHHHHHCCCCEE
Confidence 88888899999986432211111122345677765
No 236
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=65.07 E-value=48 Score=30.96 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=22.4
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
.+.|||++. ||.+..-..+++.|.+.|+++.|+..
T Consensus 22 ~~~~~vlVt---------GatG~iG~~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 22 SNAMNILVT---------GGAGFIGSNFVHYMLQSYETYKIINF 56 (346)
T ss_dssp --CEEEEEE---------TTTSHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cCCCeEEEE---------CCccHHHHHHHHHHHhhCCCcEEEEE
Confidence 344677555 44455667889999999965555553
No 237
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=65.01 E-value=50 Score=26.14 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=47.5
Q ss_pred hhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc---CCcEEEeCC-CC---CCceecccCCCceeEeeCCCCHHHHHH
Q 009759 383 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGVRA-GG---IPDIIPEDQDGKIGYLFNPGDLDDCLS 452 (526)
Q Consensus 383 ~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~---G~PvI~~~~-gg---~~e~v~~~~~~~~g~~~~~~d~~~la~ 452 (526)
++..+.+.. .|++|+-.. .+.-|..+++.+.. .+|||.... .. ..+.+ +.|..+++..+.+.+++.+
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~ 132 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAV---KAGVDAYVLKERSIADLMQ 132 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTSCHHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH---HCCCcEEEecCCCHHHHHH
Confidence 444444433 477776543 34456666666543 567764432 22 22333 5678899999999999999
Q ss_pred HHHHhhhC
Q 009759 453 KLEPLLYN 460 (526)
Q Consensus 453 ai~~ll~d 460 (526)
+|..++..
T Consensus 133 ~i~~~~~~ 140 (150)
T 4e7p_A 133 TLHTVLEG 140 (150)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99998764
No 238
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=64.89 E-value=12 Score=36.91 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
...|||+++.. | .....++++++++|++|.++............... +..+. .-...
T Consensus 17 ~~~~~ili~g~--------g--~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~-----~~~~~--------~d~~~ 73 (433)
T 2dwc_A 17 DSAQKILLLGS--------G--ELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRS-----YVGNM--------MDKDF 73 (433)
T ss_dssp TTCCEEEEESC--------S--HHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEE-----EESCT--------TCHHH
T ss_pred CCCCEEEEECC--------C--HHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceE-----EECCC--------CCHHH
Confidence 34579988832 2 24567889999999999988765432111000010 11111 11246
Q ss_pred HHHHHHhcCCCEEEECCC
Q 009759 196 IISEVARFKPDIIHASSP 213 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~ 213 (526)
+.+++++.++|+|+....
T Consensus 74 l~~~~~~~~~d~V~~~~e 91 (433)
T 2dwc_A 74 LWSVVEREKPDAIIPEIE 91 (433)
T ss_dssp HHHHHHHHCCSEEEECSS
T ss_pred HHHHHHHcCCCEEEECcc
Confidence 777777889999988654
No 239
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=64.81 E-value=36 Score=30.91 Aligned_cols=35 Identities=9% Similarity=-0.113 Sum_probs=24.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~ 162 (526)
|||++. ||.+..-..+++.|.+. |++|.+++.+..
T Consensus 1 M~ilVt---------GatG~iG~~l~~~L~~~~g~~V~~~~R~~~ 36 (289)
T 3e48_A 1 MNIMLT---------GATGHLGTHITNQAIANHIDHFHIGVRNVE 36 (289)
T ss_dssp CCEEEE---------TTTSHHHHHHHHHHHHTTCTTEEEEESSGG
T ss_pred CEEEEE---------cCCchHHHHHHHHHhhCCCCcEEEEECCHH
Confidence 677665 33344445677778888 999999987543
No 240
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=64.74 E-value=7.5 Score=30.90 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=24.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.|||+++.. +..-..+++.|.+.|++|.++..+
T Consensus 4 ~m~i~IiG~----------G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGI----------GRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECC----------SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC----------CHHHHHHHHHHHhCCCeEEEEECC
Confidence 489987721 345567889999999999988653
No 241
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=64.69 E-value=43 Score=25.32 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=61.9
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-C
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 422 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~-~ 422 (526)
.++.++.+.+ ....++......+..+...-+.++....+. ..|++++-... +.-|..+++.+. ...|+|.. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 3566666543 334455555544444433333355554443 36888865432 334555666554 46777654 3
Q ss_pred CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 423 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 423 ~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
...........+.|..+++..+.+.+++.++|.+++.
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred cCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 3322211111145678899999999999999988765
No 242
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=64.66 E-value=48 Score=25.79 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=35.1
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+++|+++.+. ......+...|.+.|++|..+... ....
T Consensus 4 ~~~iLivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~al 41 (136)
T 3t6k_A 4 PHTLLIVDDD---------DTVAEMLELVLRGAGYEVRRAASG---------------------------------EEAL 41 (136)
T ss_dssp CCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------HHHH
T ss_pred CCEEEEEeCC---------HHHHHHHHHHHHHCCCEEEEeCCH---------------------------------HHHH
Confidence 4688888653 144566777788889988643211 2445
Q ss_pred HHHHhcCCCEEEECC
Q 009759 198 SEVARFKPDIIHASS 212 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~ 212 (526)
+.+.+..||+|++..
T Consensus 42 ~~~~~~~~dlvl~D~ 56 (136)
T 3t6k_A 42 QQIYKNLPDALICDV 56 (136)
T ss_dssp HHHHHSCCSEEEEES
T ss_pred HHHHhCCCCEEEEeC
Confidence 566677999999854
No 243
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=64.63 E-value=30 Score=34.97 Aligned_cols=103 Identities=22% Similarity=0.232 Sum_probs=56.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce-eccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK-LIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.+|++++.+ ......+++.|.+.|.+|..+.............. ... ..+......+ ..-.-...+
T Consensus 364 GKrvaI~gd----------~~~~~~la~fL~elGm~vv~v~~~~~~~~~~~~~~~~l~--~~~~~~~~~v-~~~~D~~~l 430 (523)
T 3u7q_B 364 GKRFALWGD----------PDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILA--ASPYGKNATV-YIGKDLWHL 430 (523)
T ss_dssp TCEEEEECS----------HHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHH--TSGGGTTCEE-EESCCHHHH
T ss_pred CCEEEEECC----------chHHHHHHHHHHHcCCEEEEEEeCCCCHHHHHHHHHHHh--hccCCCCcEE-EECCCHHHH
Confidence 358877743 37889999999999999988876543221110000 000 0000000000 001124577
Q ss_pred HHHHHhcCCCEEEECCCchHHHH-HHHHHHhcCCCEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFG-ALIIAKLLCVPIVM 233 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~-~~~~~~~~~~p~v~ 233 (526)
.+.+++.+||+++.+...-.... ....++++++|++-
T Consensus 431 ~~~i~~~~pDLlig~s~~k~~a~~~~~~~~~~giP~ir 468 (523)
T 3u7q_B 431 RSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIR 468 (523)
T ss_dssp HHHHHHTCCSEEEECTTHHHHHHHHHHHCGGGCCCEEE
T ss_pred HHHHHhcCCCEEEECccHHHHHHHhhcccccCCCceEE
Confidence 88888999999999985422110 11234556999874
No 244
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=64.62 E-value=43 Score=26.61 Aligned_cols=79 Identities=14% Similarity=0.035 Sum_probs=44.2
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
+.+||+++.+. ......+...|.+ .|++|...+... ..
T Consensus 4 ~~~~ILivdd~---------~~~~~~l~~~L~~~~~~~v~~~~~~~--------------------------------~~ 42 (153)
T 3cz5_A 4 STARIMLVDDH---------PIVREGYRRLIERRPGYAVVAEAADA--------------------------------GE 42 (153)
T ss_dssp CCEEEEEECSC---------HHHHHHHHHHHTTSTTEEEEEEESSH--------------------------------HH
T ss_pred cccEEEEECCc---------HHHHHHHHHHHhhCCCcEEEEEeCCH--------------------------------HH
Confidence 45799888653 2445566667776 688776332211 24
Q ss_pred HHHHHHhcCCCEEEECCC--chHH--HHHHHHHHhcCCCEEEEEe
Q 009759 196 IISEVARFKPDIIHASSP--GIMV--FGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~--~~~~--~~~~~~~~~~~~p~v~~~h 236 (526)
..+.+.+..||+|++... ...+ +...+......+|+|+...
T Consensus 43 a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 87 (153)
T 3cz5_A 43 AYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTM 87 (153)
T ss_dssp HHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEEC
Confidence 455667778999998642 1122 2222222334677776543
No 245
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=64.54 E-value=35 Score=26.92 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=19.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
..+.|||+++.+. ......+...|.+.|++|..+
T Consensus 11 ~~~~~~iLivdd~---------~~~~~~l~~~L~~~g~~v~~~ 44 (143)
T 3m6m_D 11 RVRSMRMLVADDH---------EANRMVLQRLLEKAGHKVLCV 44 (143)
T ss_dssp ----CEEEEECSS---------HHHHHHHHHHHHC--CEEEEE
T ss_pred ccccceEEEEeCC---------HHHHHHHHHHHHHcCCeEEEe
Confidence 3456899888653 244556677777889988654
No 246
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=64.49 E-value=42 Score=26.32 Aligned_cols=107 Identities=11% Similarity=0.169 Sum_probs=64.2
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCC--CeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc-----CCcE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGM--PAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPV 418 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~--~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~-----G~Pv 418 (526)
..+++|+.+.+ ....+....... ...+.-.-+.++....+.. .|++|+-.. .+.-|..+++.+.. ++|+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 35666666543 334444444433 2223333333566555544 477776544 24456777777764 5787
Q ss_pred EEeCCC-CCC---ceecccCCCceeEeeCCC-CHHHHHHHHHHhhh
Q 009759 419 VGVRAG-GIP---DIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLY 459 (526)
Q Consensus 419 I~~~~g-g~~---e~v~~~~~~~~g~~~~~~-d~~~la~ai~~ll~ 459 (526)
|..... ... +.+ +.|..+++..+. +.+++.++|..+++
T Consensus 85 i~~s~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCM---AAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHH---HTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 754332 222 233 567889999999 99999999988874
No 247
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=64.17 E-value=20 Score=28.14 Aligned_cols=106 Identities=11% Similarity=0.041 Sum_probs=61.3
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEeccc-ChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH-cCCcEEEe-CC
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGML-LGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-SGIPVVGV-RA 423 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v-~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma-~G~PvI~~-~~ 423 (526)
.++.|+=+.+ ....++...+..+....+.. +.++..+++.. -|++++=-. .+.-|.-+++.+. .++|||.- ..
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecC
Confidence 4566666543 34445554444343333322 33555555554 478876433 2344566666653 57888743 33
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
+...... +.+..+++..|-+.+++.++|.++++
T Consensus 89 ~~~~~~~---~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 89 GSKGLDT---RYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CTTSCCS---SSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred ccHHHHH---hCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 3222222 45677899999999999999987753
No 248
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=64.14 E-value=5.7 Score=39.91 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=54.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCce-eccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAK-LIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.+|++++.+. .....+++.|.+.|.+|..+.............. ..+. .. ....-.-...+
T Consensus 332 GKrv~i~~~~----------~~~~~l~~~L~ElGmevv~~gt~~~~~~d~~~~~~~l~~---~~-----~i~~d~d~~el 393 (483)
T 3pdi_A 332 GKRVLLYTGG----------VKSWSVVSALQDLGMKVVATGTKKSTEEDKARIRELMGD---DV-----KMLDEGNARVL 393 (483)
T ss_dssp TCEEEEECSS----------SCHHHHHHHHHHHTCEEEEECBSSSCHHHHHHHHHHSCS---SC-----CBCCSCSHHHH
T ss_pred CCEEEEECCC----------chHHHHHHHHHHCCCEEEEEecCCCCHHHHHHHHHhcCC---CC-----EEEeCCCHHHH
Confidence 3588777542 3467888899999999988765433221111000 0000 00 00001124577
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+||+++.+... ..++++.++|++.
T Consensus 394 ~~~i~~~~pDL~ig~~~~------~~~a~k~gIP~~~ 424 (483)
T 3pdi_A 394 LKTVDEYQADILIAGGRN------MYTALKGRVPFLD 424 (483)
T ss_dssp HHHHHHTTCSEEECCGGG------HHHHHHTTCCBCC
T ss_pred HHHHHhcCCCEEEECCch------hHHHHHcCCCEEE
Confidence 888889999999997642 2356788999873
No 249
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=64.01 E-value=16 Score=28.35 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+++||+++.+. ......+.+.|.+.|++|..+... ..
T Consensus 4 ~~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~ 41 (132)
T 3lte_A 4 KQSKRILVVDDD---------QAMAAAIERVLKRDHWQVEIAHNG---------------------------------FD 41 (132)
T ss_dssp ---CEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------HH
T ss_pred CCCccEEEEECC---------HHHHHHHHHHHHHCCcEEEEeCCH---------------------------------HH
Confidence 345799888653 245566777888899988754211 24
Q ss_pred HHHHHHhcCCCEEEECC
Q 009759 196 IISEVARFKPDIIHASS 212 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~ 212 (526)
..+.+.+.+||+|++..
T Consensus 42 a~~~l~~~~~dlii~d~ 58 (132)
T 3lte_A 42 AGIKLSTFEPAIMTLDL 58 (132)
T ss_dssp HHHHHHHTCCSEEEEES
T ss_pred HHHHHHhcCCCEEEEec
Confidence 45566777999999864
No 250
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=63.96 E-value=38 Score=25.98 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=59.6
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHHc---CCcEEEeC
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGVR 422 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma~---G~PvI~~~ 422 (526)
..++.++.+.+ ....+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+.. ..|+|...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 45666766543 3344455444444333333344556555543 477776543 23446666666543 46776543
Q ss_pred -CCCC---CceecccCCCceeEeeCCC-CHHHHHHHHHHhhhC
Q 009759 423 -AGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 460 (526)
Q Consensus 423 -~gg~---~e~v~~~~~~~~g~~~~~~-d~~~la~ai~~ll~d 460 (526)
.... .+.+ +.|..+++..+. +.+.+.++|..++..
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 87 ATENMADIAKAL---RLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCCCHHHHHHHH---HHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHH---HcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 2222 2233 567788999988 899999999988754
No 251
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=63.91 E-value=64 Score=27.29 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=61.3
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEeccc-ChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHHc--CCcEEEe-C
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGML-LGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-R 422 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v-~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma~--G~PvI~~-~ 422 (526)
.+++|+.+.+ ....+.......+..+.+.. +.++....+. ..|++|+-... +.-|..+++.+.. ..|||.- .
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEec
Confidence 4566666543 23344444443344444222 2244444443 35888765432 3346666666643 3466543 3
Q ss_pred CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHH
Q 009759 423 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 462 (526)
Q Consensus 423 ~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~ 462 (526)
.... .+.+ +.|..+++..+.+.+++..+|..++....
T Consensus 94 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 94 FSQRDLVERAR---DAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp GGGHHHHHTTG---GGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 2221 2233 56788999999999999999999886543
No 252
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=63.90 E-value=50 Score=29.61 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=28.9
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.+..+|+++.... ...-.......+.+++.+.|+++.++...
T Consensus 3 ~~~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 44 (280)
T 3gyb_A 3 LRTQLIAVLIDDY---SNPWFIDLIQSLSDVLTPKGYRLSVIDSL 44 (280)
T ss_dssp -CCCEEEEEESCT---TSGGGHHHHHHHHHHHGGGTCEEEEECSS
T ss_pred CccCEEEEEeCCC---CChHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456898887532 22234566777888888999999998765
No 253
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=63.85 E-value=48 Score=25.95 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=62.9
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCe--EEecccChhhHHHHHH------------cCcEEEecCCC-CCCcHHHHHHHH-
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYA------------SGDVFVMPSES-ETLGLVVLEAMS- 413 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V--~~~g~v~~~~l~~~~~------------~aDv~v~ps~~-e~~~~~ilEAma- 413 (526)
.++.|+.+.+ ....++......+. .+...-+.++....+. ..|++|+-... +.-|..+++.+.
T Consensus 7 ~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 86 (149)
T 1k66_A 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQ 86 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTT
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHh
Confidence 4566666543 33344444443322 2333333356666665 35888875443 345667777775
Q ss_pred ----cCCcEEEe-CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 414 ----SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 414 ----~G~PvI~~-~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.++|+|.. ..... .+.+ +.|..+++..+.+.+++.++|..+++
T Consensus 87 ~~~~~~~~ii~~t~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 87 DEVLKKIPVVIMTTSSNPKDIEICY---SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp STTGGGSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcccCCCeEEEEeCCCCHHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35677654 33322 2233 56778999999999999999988864
No 254
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=63.81 E-value=8 Score=34.26 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.-+.|||++. ||.+..-..+++.|.++||+|.++..+.
T Consensus 18 ~l~~~~ilVt---------GatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 18 YFQGMRVLVV---------GANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp ---CCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CcCCCeEEEE---------CCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 4456788666 3444555678899999999999998654
No 255
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=63.67 E-value=40 Score=32.23 Aligned_cols=81 Identities=6% Similarity=0.010 Sum_probs=56.3
Q ss_pred hhHHHHHHcCcEEEec--CCC-CCCcHHHHHHHHcCCcEEEeCCCCCCceecccCCCceeEe-e-CCCCHHHHHHHHHHh
Q 009759 383 EELSQAYASGDVFVMP--SES-ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYL-F-NPGDLDDCLSKLEPL 457 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~p--s~~-e~~~~~ilEAma~G~PvI~~~~gg~~e~v~~~~~~~~g~~-~-~~~d~~~la~ai~~l 457 (526)
++..++++...+.|.. +.. +-..=|+.+|+.+|+..|.-..+...++++ . ..++ + +..+++++|+-|..|
T Consensus 223 ~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~P----p-~SfI~~~dF~s~~~La~yL~~L 297 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFN----P-KSFVNVHDFKNFDEAIDYIKYL 297 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSC----G-GGSEEGGGSSSHHHHHHHHHHH
T ss_pred ccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCC----C-CceEEcccCCCHHHHHHHHHHH
Confidence 3556778888888765 232 334558899999997666665555656661 2 2332 2 446899999999999
Q ss_pred hhCHHHHHHHH
Q 009759 458 LYNQELRETMG 468 (526)
Q Consensus 458 l~d~~~~~~~~ 468 (526)
-+|++.+.+.-
T Consensus 298 ~~n~~~Y~~y~ 308 (371)
T 2nzw_A 298 HTHKNAYLDML 308 (371)
T ss_dssp HTCHHHHHHHH
T ss_pred hcCHHHHHHHH
Confidence 99998877654
No 256
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=63.55 E-value=21 Score=27.24 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=61.9
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC--CCCcHHHHHHHH-----cCCcEEE
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES--ETLGLVVLEAMS-----SGIPVVG 420 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~--e~~~~~ilEAma-----~G~PvI~ 420 (526)
.++.++.+.+ ....+.......+..+...-+.++....+. ..|++++-... +.-|..+++.+. .++|+|.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 3566666543 233444444333333333333345544444 35887764432 334666777664 4688887
Q ss_pred eCCCCC----CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 421 VRAGGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 421 ~~~gg~----~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
. .... .+.+ +.|..+++..+.+.+++.++|..++..
T Consensus 86 ~-~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 86 I-GNPDGFAQHRKL---KAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp E-ECGGGHHHHHHS---TTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred E-ecCCchhHHHHH---HhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 6 3322 2233 567789999999999999999888753
No 257
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=63.49 E-value=21 Score=33.03 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=19.6
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
||.+..-..+++.|.+.||+|.++..
T Consensus 7 GatG~iG~~l~~~L~~~G~~V~~~~r 32 (311)
T 2p5y_A 7 GGAGFIGSHIVEDLLARGLEVAVLDN 32 (311)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEECC
T ss_pred eCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 44445556788999999999988754
No 258
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=62.87 E-value=13 Score=29.53 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=41.9
Q ss_pred cCcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 391 SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 391 ~aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~-~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
..|++|+-... +.-|..+++.+. ..+|||.- ..... .+.+ +.|..+++..+.+.++|..+|..+++
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAM---RAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHH---TTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH---HhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 45777764432 233455555543 35777654 32222 2234 66888999999999999999998875
No 259
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=62.75 E-value=31 Score=32.37 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=50.0
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
++|||++|.. |..+. ...++.|.+. |.+|.-++..... . . + . .....
T Consensus 24 ~~~rvgiiG~-------G~ig~--~~~~~~l~~~~~~~lvav~d~~~~--~-~-----g-----~----------~~~~~ 71 (330)
T 4ew6_A 24 SPINLAIVGV-------GKIVR--DQHLPSIAKNANFKLVATASRHGT--V-E-----G-----V----------NSYTT 71 (330)
T ss_dssp CCEEEEEECC-------SHHHH--HTHHHHHHHCTTEEEEEEECSSCC--C-T-----T-----S----------EEESS
T ss_pred CCceEEEEec-------CHHHH--HHHHHHHHhCCCeEEEEEEeCChh--h-c-----C-----C----------CccCC
Confidence 4589999953 22221 1456666665 6666666543321 0 0 0 0 11224
Q ss_pred HHHHHHh-cCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 196 IISEVAR-FKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 196 l~~~l~~-~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.. .++|+|++..+..........+-..|+++++
T Consensus 72 ~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~ 110 (330)
T 4ew6_A 72 IEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAGKHVFL 110 (330)
T ss_dssp HHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEE
Confidence 5666776 7899999998866665555556667877664
No 260
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=62.57 E-value=19 Score=33.38 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.+.||+|.++....
T Consensus 19 GatG~iG~~l~~~L~~~G~~V~~~~r~~ 46 (321)
T 2pk3_A 19 GVAGFVGKYLANHLTEQNVEVFGTSRNN 46 (321)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence 4444555678899999999999987554
No 261
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=62.36 E-value=18 Score=34.38 Aligned_cols=93 Identities=10% Similarity=0.071 Sum_probs=59.5
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecC
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 399 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps 399 (526)
.+..|+++|-= .-|...++.++...++++++-+-+ ...+..++..++.++... +++.+++. ..|++++.+
T Consensus 26 ~~~rigiIG~G--~~g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~g~~~~-----~~~~~ll~~~~~D~V~i~t 97 (350)
T 3rc1_A 26 NPIRVGVIGCA--DIAWRRALPALEAEPLTEVTAIAS-RRWDRAKRFTERFGGEPV-----EGYPALLERDDVDAVYVPL 97 (350)
T ss_dssp CCEEEEEESCC--HHHHHTHHHHHHHCTTEEEEEEEE-SSHHHHHHHHHHHCSEEE-----ESHHHHHTCTTCSEEEECC
T ss_pred CceEEEEEcCc--HHHHHHHHHHHHhCCCeEEEEEEc-CCHHHHHHHHHHcCCCCc-----CCHHHHhcCCCCCEEEECC
Confidence 45678888851 112224667777888888875543 234445555554455432 45666676 479999877
Q ss_pred CCCCCcHHHHHHHHcCCcEEEeC
Q 009759 400 ESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
......-.+.+|+..|++|++-+
T Consensus 98 p~~~h~~~~~~al~aGk~Vl~EK 120 (350)
T 3rc1_A 98 PAVLHAEWIDRALRAGKHVLAEK 120 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEES
T ss_pred CcHHHHHHHHHHHHCCCcEEEeC
Confidence 65555556788999999998753
No 262
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=62.05 E-value=21 Score=28.26 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+++||+++.+. + .....+.+.|.+.|++|..+... ..
T Consensus 6 ~~~~~iLivd~~-~--------~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~ 43 (147)
T 2zay_A 6 GKWWRIMLVDTQ-L--------PALAASISALSQEGFDIIQCGNA---------------------------------IE 43 (147)
T ss_dssp --CEEEEEECTT-G--------GGGHHHHHHHHHHTEEEEEESSH---------------------------------HH
T ss_pred CCCceEEEEeCC-H--------HHHHHHHHHHHHcCCeEEEeCCH---------------------------------HH
Confidence 345799888653 1 33456667777789887744211 24
Q ss_pred HHHHHHhcCCCEEEECCC--chHHHHHHH-HH---HhcCCCEEEEEe
Q 009759 196 IISEVARFKPDIIHASSP--GIMVFGALI-IA---KLLCVPIVMSYH 236 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~--~~~~~~~~~-~~---~~~~~p~v~~~h 236 (526)
..+.+.+..||+|++... ...++..+. +. ....+|+|+...
T Consensus 44 a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 44 AVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeC
Confidence 455666678999998642 222222221 12 234678776544
No 263
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=61.89 E-value=18 Score=34.05 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=24.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.|||+++.- ||.+ +-.+++.|.++|++|.+.-...
T Consensus 4 ~~~i~~iGi-------Gg~G--ms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGI-------GGTF--MGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESC-------CSHH--HHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEE-------CHHH--HHHHHHHHHhCCCEEEEEcCCC
Confidence 367877732 4433 4568899999999999986543
No 264
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=61.88 E-value=53 Score=28.45 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=45.6
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.+|||+++.+. ......+...|...|++|..+... ...
T Consensus 6 ~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~a 43 (233)
T 1ys7_A 6 TSPRVLVVDDD---------SDVLASLERGLRLSGFEVATAVDG---------------------------------AEA 43 (233)
T ss_dssp -CCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------HHH
T ss_pred CCCeEEEEeCC---------HHHHHHHHHHHHhCCCEEEEECCH---------------------------------HHH
Confidence 45899888663 145566777888889987643211 134
Q ss_pred HHHHHhcCCCEEEECC--CchHHHH--HHHHHHhcCCCEEEEEe
Q 009759 197 ISEVARFKPDIIHASS--PGIMVFG--ALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~--~~~~~~~--~~~~~~~~~~p~v~~~h 236 (526)
...+.+..||+|++.. +...++. ..+.....++|+|+...
T Consensus 44 ~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 44 LRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp HHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 4556667899999854 2222222 22222235788876544
No 265
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=61.58 E-value=11 Score=33.54 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=29.6
Q ss_pred CcEEEEEeccCCCCccCchH-HHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYK-NRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.|||++|..+ +..+|.. ..+..+++.|.+.|++|.++-...
T Consensus 1 ~mkiLiI~gs---pr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 1 GKKVLIVYAH---QEPKSFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CCEEEEEECC---SCTTSHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCEEEEEEeC---CCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 3899999764 3445544 445677788888899999997644
No 266
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=61.55 E-value=55 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=22.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
.+||+++.+. ......+.+.|.+.|++|..+
T Consensus 3 ~~~ilivdd~---------~~~~~~l~~~l~~~g~~v~~~ 33 (143)
T 3jte_A 3 LAKILVIDDE---------STILQNIKFLLEIDGNEVLTA 33 (143)
T ss_dssp CCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEcCC---------HHHHHHHHHHHHhCCceEEEe
Confidence 4689888653 245667788888899987754
No 267
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=61.43 E-value=12 Score=37.70 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=55.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
+|++++.+ ......+++.|.+.|.+|..+.........+.... .. ... ......-.-...+.+
T Consensus 349 Krv~i~g~----------~~~~~~la~~L~ElGm~vv~~gt~~~~~~d~~~l~--~~--~~~---~~~i~~~~d~~el~~ 411 (492)
T 3u7q_A 349 KRVMLYIG----------GLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTM--KE--MGD---STLLYDDVTGYEFEE 411 (492)
T ss_dssp CEEEECBS----------SSHHHHTHHHHHTTTCEEEEEEESSCCHHHHHHHH--TT--SCT---TCEEEESCBHHHHHH
T ss_pred CEEEEECC----------CchHHHHHHHHHHCCCEEEEEeCCCCCHHHHHHHH--Hh--CCC---CcEEEcCCCHHHHHH
Confidence 57876543 14678899999999999998776543322111100 00 000 000001112457888
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+++.+||+++.+.. ...++++.++|++-
T Consensus 412 ~i~~~~pDL~ig~~~------~~~ia~k~gIP~~~ 440 (492)
T 3u7q_A 412 FVKRIKPDLIGSGIK------EKFIFQKMGIPFRE 440 (492)
T ss_dssp HHHHHCCSEEEECHH------HHHHHHHTTCCEEE
T ss_pred HHHhcCCcEEEeCcc------hhHHHHHcCCCEEe
Confidence 888999999999753 24567889999883
No 268
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=61.38 E-value=54 Score=30.78 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=57.3
Q ss_pred CCcEEEEEecccccccHHHHHHHHH-hCCCcEEEEEeCCccHHHHHHHhcCCCe-EEecccChhhHHHHHH--cCcEEEe
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVFVM 397 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~-~l~~~~l~ivG~g~~~~~l~~l~~~~~V-~~~g~v~~~~l~~~~~--~aDv~v~ 397 (526)
+...|+.+|-= .-| ...+.++. ..++++++.+-+ ...+..+.+.+..++ ... +++.+++. .+|+++.
T Consensus 7 ~~~~v~iiG~G--~ig-~~~~~~l~~~~~~~~~vav~d-~~~~~~~~~a~~~g~~~~~-----~~~~~~l~~~~~D~V~i 77 (346)
T 3cea_A 7 KPLRAAIIGLG--RLG-ERHARHLVNKIQGVKLVAACA-LDSNQLEWAKNELGVETTY-----TNYKDMIDTENIDAIFI 77 (346)
T ss_dssp CCEEEEEECCS--TTH-HHHHHHHHHTCSSEEEEEEEC-SCHHHHHHHHHTTCCSEEE-----SCHHHHHTTSCCSEEEE
T ss_pred CcceEEEEcCC--HHH-HHHHHHHHhcCCCcEEEEEec-CCHHHHHHHHHHhCCCccc-----CCHHHHhcCCCCCEEEE
Confidence 45668888741 112 24556666 677887765554 334455555555444 222 35666676 6899998
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 398 PSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 398 ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
.+......-.+.+++..|++|++-.
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~~eK 102 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVFCEK 102 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred eCChHhHHHHHHHHHHCCCEEEEcC
Confidence 7765444556778999999999853
No 269
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=61.38 E-value=46 Score=25.79 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=60.7
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeE-EecccChhhHHHHHHc-------CcEEEecCCC-CCCcHHHHHHHHc----CC
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAV-FTGMLLGEELSQAYAS-------GDVFVMPSES-ETLGLVVLEAMSS----GI 416 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~-~~g~v~~~~l~~~~~~-------aDv~v~ps~~-e~~~~~ilEAma~----G~ 416 (526)
.++.|+.+.+ ....++......+.. +....+.++..+.+.. .|++++=... +.-|..+++.+.. ..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 82 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 82 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCC
Confidence 4566666543 233444444433321 1122233455555443 5888875442 3346666766642 46
Q ss_pred cEEEe-CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 417 PVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 417 PvI~~-~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
|||.. ..... .+.+ +.|..+++..+.+.+++.++|.+++.
T Consensus 83 ~ii~lt~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 83 PIVALTAFADDSNIKECL---ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CEEEEESCCSHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 77643 33332 2233 56788999999999999999988765
No 270
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=61.37 E-value=26 Score=30.53 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=45.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
|||+++++ |.+.-+..++++.++. ..+|.++.++.............+++.+.... ..+...-.+-..+
T Consensus 3 ~riavl~S--------g~Gsnl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~-~~~~~r~~~d~~~ 73 (211)
T 3p9x_A 3 KRVAIFAS--------GSGTNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDP-KTYPSKEAYEIEV 73 (211)
T ss_dssp CEEEEECC--------TTCHHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCG-GGSSSHHHHHHHH
T ss_pred CEEEEEEe--------CCchHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeCh-hhcCchhhhHHHH
Confidence 68988865 2224577788777553 25777777654322111111111222211110 0010111123467
Q ss_pred HHHHHhcCCCEEEECCCc
Q 009759 197 ISEVARFKPDIIHASSPG 214 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~ 214 (526)
.+.+++.+||+|++-.+.
T Consensus 74 ~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 74 VQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHhcCCCEEEEeCch
Confidence 888999999999998753
No 271
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=61.14 E-value=49 Score=24.76 Aligned_cols=105 Identities=12% Similarity=0.267 Sum_probs=60.1
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH---cCCcEEEe-CC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RA 423 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~-~~ 423 (526)
++.++.+.+ ....+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ...|+|.. ..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 455565443 2334444444334333333333555555543 588876433 2334666777665 35677654 33
Q ss_pred CCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 424 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 424 gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
+.. .+.+ +.|..+++..+.+.+++..+|..++.
T Consensus 82 ~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 82 ESWQDKVEVL---SAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp CCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---HcCccceEECCCCHHHHHHHHHHHHH
Confidence 322 2233 56778999999999999999987753
No 272
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=60.99 E-value=35 Score=30.15 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=42.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+++.. | ..-..+++.|.+.|++|..+........ . ....+.+
T Consensus 1 m~vgiIG~-------G---~mG~~~~~~l~~~g~~lv~v~d~~~~~~---~----------------------~~~~~~~ 45 (236)
T 2dc1_A 1 MLVGLIGY-------G---AIGKFLAEWLERNGFEIAAILDVRGEHE---K----------------------MVRGIDE 45 (236)
T ss_dssp CEEEEECC-------S---HHHHHHHHHHHHTTCEEEEEECSSCCCT---T----------------------EESSHHH
T ss_pred CEEEEECC-------C---HHHHHHHHHHhcCCCEEEEEEecCcchh---h----------------------hcCCHHH
Confidence 68888742 2 3334466677778999865544322110 0 0112223
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+. .++|+|+...+..........+...|+.++.
T Consensus 46 l~~-~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~ 79 (236)
T 2dc1_A 46 FLQ-REMDVAVEAASQQAVKDYAEKILKAGIDLIV 79 (236)
T ss_dssp HTT-SCCSEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred Hhc-CCCCEEEECCCHHHHHHHHHHHHHCCCcEEE
Confidence 332 4789999988755444444444455665553
No 273
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=60.83 E-value=18 Score=31.78 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=59.6
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccc-----cCc-eeccccccCCCccccccchhcc
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEF-----YGA-KLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
+|+++.++.- ....-...-+...++.|++. |-+|++++.+....... .+. +++.+. .+.+.. .....+
T Consensus 5 ~ilV~~E~~~-g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~~Gad~v~~v~---~~~~~~-~~~~~~ 79 (217)
T 3ih5_A 5 NLFVYCEIEE-GIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPYGVDKLHVFD---AEGLYP-YTSLPH 79 (217)
T ss_dssp CEEEECCEET-TEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGGGTCSEEEEEE---CGGGSS-CCHHHH
T ss_pred cEEEEEECcC-CEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCEEEEec---Cccccc-CCHHHH
Confidence 5888877421 11122344556666777653 78888887665421111 111 111111 111111 112334
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
...+.+++++.+||+|++.......-.+-.++.+++.+.+.++
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv 122 (217)
T 3ih5_A 80 TSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADC 122 (217)
T ss_dssp HHHHHHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSC
T ss_pred HHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccceE
Confidence 5677888889999999997654333334456777888876443
No 274
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=60.69 E-value=96 Score=27.93 Aligned_cols=231 Identities=11% Similarity=-0.027 Sum_probs=113.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
..+..+|+++..... ...-.......+-+++.+. |+.+.+.......... ...
T Consensus 5 ~~~~~~Igvi~~~~~--~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~------------------------~~~ 58 (304)
T 3gbv_A 5 SNKKYTFACLLPKHL--EGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDY------------------------NSF 58 (304)
T ss_dssp --CCEEEEEEEECCC--TTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCH------------------------HHH
T ss_pred cCCcceEEEEecCCC--CchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCH------------------------HHH
Confidence 345578988865420 2223445567777888888 9999987653211100 001
Q ss_pred HHHHHHHHhcCCCEEEECCCchH-HHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeC
Q 009759 194 PRIISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 272 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 272 (526)
....+.+...++|.|++...... ....+......++|+|+.-.+.... ...+.|.+.
T Consensus 59 ~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~----------------------~~~~~V~~D 116 (304)
T 3gbv_A 59 VATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA----------------------PPLAFFGQN 116 (304)
T ss_dssp HHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS----------------------CCSEEEECC
T ss_pred HHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC----------------------CceEEEecC
Confidence 13344455669999988765332 1222333455699988754332110 011222221
Q ss_pred Ch----hHHHHHHHhcccCCCcEEEeecCCC-CCCCCC-CcccHHHHHhhcC-CCCCCcEEEEEecccccccHHHHHHHH
Q 009759 273 SV----AIGKDLEAARVTAANKIRIWKKGVD-SESFHP-RFRSSEMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVM 345 (526)
Q Consensus 273 S~----~~~~~l~~~~~~~~~ki~vi~ngid-~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~~vG~l~~~Kg~~~li~a~ 345 (526)
.. ...+.+.+.+. ...++.++....+ ...... .......+..+.. ..+-....+..+......+...+.+.+
T Consensus 117 ~~~~g~~a~~~l~~~g~-~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 195 (304)
T 3gbv_A 117 SHQSGYFAARMLMLLAV-NDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFF 195 (304)
T ss_dssp HHHHHHHHHHHHHHHST-TCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHH
Confidence 11 22344444432 2246665542110 000000 0001111111110 112233345567778888888888888
Q ss_pred HhCCCcEEEEEeCCccHHHHHHHhcC--CCeEEecccChhhHHHHHHcCcE
Q 009759 346 DRLPEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDV 394 (526)
Q Consensus 346 ~~l~~~~l~ivG~g~~~~~l~~l~~~--~~V~~~g~v~~~~l~~~~~~aDv 394 (526)
...++...+++.+..-...++.+.+. ..|.+.|+=......+++...-.
T Consensus 196 ~~~~~~~ai~~~~d~a~g~~~al~~~g~~di~vig~d~~~~~~~~~~~~~~ 246 (304)
T 3gbv_A 196 REHPDVKHGITFNSKVYIIGEYLQQRRKSDFSLIGYDLLERNVTCLKEGTV 246 (304)
T ss_dssp HHCTTCCEEEESSSCTHHHHHHHHHTTCCSCEEEEESCCHHHHHHHHHTSE
T ss_pred HhCCCeEEEEEcCcchHHHHHHHHHcCCCCcEEEEeCCCHHHHHHHHcCce
Confidence 88888888887765432333332221 25778887443443566655433
No 275
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=60.48 E-value=76 Score=28.53 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=53.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
.+|+++.... ...-.......+-+++.+.|+++.++....... ......+
T Consensus 16 ~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~~~~~ 65 (298)
T 3tb6_A 16 KTIGVLTTYI---SDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPD---------------------------NERRGLE 65 (298)
T ss_dssp CEEEEEESCS---SSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHHHHHH
T ss_pred ceEEEEeCCC---CchHHHHHHHHHHHHHHHCCCEEEEEeCCCChH---------------------------HHHHHHH
Confidence 6899887642 222345667788888999999999886543210 0113344
Q ss_pred HHHhcCCCEEEECCCch----HHHHHHHHHHhcCCCEEEEEec
Q 009759 199 EVARFKPDIIHASSPGI----MVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~----~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.+...++|.|++..... .....+......++|+|+.-..
T Consensus 66 ~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 66 NLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINAS 108 (298)
T ss_dssp HHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecC
Confidence 44466999988865321 1122233445679999875443
No 276
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=60.44 E-value=13 Score=31.02 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=41.4
Q ss_pred HHHHcCcEEEecCC-CCCCcHHHH---HHHHcCCcEEEeCC-----CCCC--------ceecccCC-------------C
Q 009759 387 QAYASGDVFVMPSE-SETLGLVVL---EAMSSGIPVVGVRA-----GGIP--------DIIPEDQD-------------G 436 (526)
Q Consensus 387 ~~~~~aDv~v~ps~-~e~~~~~il---EAma~G~PvI~~~~-----gg~~--------e~v~~~~~-------------~ 436 (526)
..+..||++|.-.. .+.=.++.+ -|.+.|+||++-.. |+.. +.. ++ .
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~---e~~f~~~N~~~~G~i~ 141 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIA---ENQFHYLNLYTVGLIK 141 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTT---CCCSCCCCHHHHHHHH
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHh---hhhhhhhhHHHhhhHH
Confidence 55899999987543 122344444 47899999987632 2211 111 11 1
Q ss_pred ceeEeeCCCCHHHHHHHHHHhh
Q 009759 437 KIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 437 ~~g~~~~~~d~~~la~ai~~ll 458 (526)
.+|.++. +.+++.++|...+
T Consensus 142 ~~g~~~~--~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 142 LNGRVVS--SEEDLLEEIKQRL 161 (162)
T ss_dssp TTEEEES--SHHHHHHHHHHTC
T ss_pred hCCeEEe--CHHHHHHHHHHHh
Confidence 2677776 8888888887764
No 277
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=60.40 E-value=28 Score=32.67 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=57.4
Q ss_pred CcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCC
Q 009759 323 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 400 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~ 400 (526)
...|+++|-=. --..+++++.+.++++++-+-+. ..+..+.+.+..++. ...+++.+++. .+|++++.+.
T Consensus 5 ~~~igiiG~G~---~g~~~~~~l~~~~~~~l~av~d~-~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp 76 (330)
T 3e9m_A 5 KIRYGIMSTAQ---IVPRFVAGLRESAQAEVRGIASR-RLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTY 76 (330)
T ss_dssp CEEEEECSCCT---THHHHHHHHHHSSSEEEEEEBCS-SSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCC
T ss_pred eEEEEEECchH---HHHHHHHHHHhCCCcEEEEEEeC-CHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCC
Confidence 34677777411 12246677888888887755442 234445554443331 11256777787 7899988776
Q ss_pred CCCCcHHHHHHHHcCCcEEEeC
Q 009759 401 SETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~ 422 (526)
.....-.+.+|+..|++|++-+
T Consensus 77 ~~~h~~~~~~al~~gk~vl~EK 98 (330)
T 3e9m_A 77 NQGHYSAAKLALSQGKPVLLEK 98 (330)
T ss_dssp GGGHHHHHHHHHHTTCCEEECS
T ss_pred CHHHHHHHHHHHHCCCeEEEeC
Confidence 5544556778999999998754
No 278
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=60.31 E-value=12 Score=34.24 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=24.8
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
...|||++. ||.+..-..+++.|.++||+|.++..
T Consensus 10 ~~~~~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~r 44 (292)
T 1vl0_A 10 HHHMKILIT---------GANGQLGREIQKQLKGKNVEVIPTDV 44 (292)
T ss_dssp --CEEEEEE---------STTSHHHHHHHHHHTTSSEEEEEECT
T ss_pred cccceEEEE---------CCCChHHHHHHHHHHhCCCeEEeccC
Confidence 345788665 44455667788999999999988754
No 279
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=60.23 E-value=12 Score=31.06 Aligned_cols=37 Identities=16% Similarity=-0.076 Sum_probs=29.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||+++.. ...|.....+..+++.|.+.|++|.++..
T Consensus 1 Mkv~IvY~----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 37 (161)
T 3hly_A 1 MSVLIGYL----SDYGYSDRLSQAIGRGLVKTGVAVEMVDL 37 (161)
T ss_dssp -CEEEEEC----TTSTTHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEEEE----CCChHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 78888854 33578888899999999999999988754
No 280
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=60.19 E-value=24 Score=29.51 Aligned_cols=108 Identities=13% Similarity=0.214 Sum_probs=62.3
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH---cCCcEEEe-
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 421 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~- 421 (526)
..++.|+.+.+ ....+..+....+..+.-.-+.++..+.+.. .|++|+-.. .+.-|..+++.+. .+.|||.-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 34566666543 2334444444334333333333555555544 477776433 2344666666654 36777654
Q ss_pred CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 ~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
..... .+.+ +.|..+++..+.+.+++..+|..++..
T Consensus 87 ~~~~~~~~~~a~---~~Ga~~~l~KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 87 GYASIATAVQAV---KDGADNYLAKPANVESILAALQTNASE 125 (184)
T ss_dssp SSCCHHHHHHHH---HHTCSEEEESSCCHHHHHHHTSTTHHH
T ss_pred CCCCHHHHHHHH---HhCHHHheeCCCCHHHHHHHHHHHHHH
Confidence 33322 2233 567889999999999999999888754
No 281
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=59.87 E-value=29 Score=27.22 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=61.0
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCCCCCcHHHHHHHH---cCCcEEEe-CC
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMS---SGIPVVGV-RA 423 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~e~~~~~ilEAma---~G~PvI~~-~~ 423 (526)
.+++++.+.+ ....+.......+..+...-+.++....+.. .|++|+-...+.-|..+++.+. .++|+|.. ..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECC
Confidence 4566666543 3344555555444444433333555555544 4777765421223444555543 35777654 33
Q ss_pred CCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 424 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 424 gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
... .+.+ +.|..+++..+.+.+++.++|..++...
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 85 VDKDLIINSV---KAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CCHHHHHHHH---HHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHH---HCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 222 1223 4567788999999999999999988753
No 282
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=59.80 E-value=25 Score=35.73 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
..+.+.+++.+||+++.+.. ...++++.++|++.
T Consensus 446 ~el~~~i~~~~pDl~ig~~~------~~~~a~k~gIP~~~ 479 (533)
T 1mio_A 446 HDMEVVLEKLKPDMFFAGIK------EKFVIQKGGVLSKQ 479 (533)
T ss_dssp HHHHHHHHHHCCSEEEECHH------HHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCCEEEcccc------hhHHHHhcCCCEEE
Confidence 46788889999999998753 23456778999973
No 283
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=59.78 E-value=54 Score=24.73 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=60.9
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH--cCCcEEEeC-CC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS--SGIPVVGVR-AG 424 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma--~G~PvI~~~-~g 424 (526)
++.++.+.+ ....+.......+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+. .+.|+|... ..
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 456666543 2334444444334333333344555555543 477776543 2334556666654 357776543 22
Q ss_pred CC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 425 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 425 g~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.. .+.+ +.|..+++..+.+.+++..+|..++.
T Consensus 84 ~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 84 SEIDKVIGL---EIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 22 1233 56788999999999999999987764
No 284
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=59.66 E-value=20 Score=33.90 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=25.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.|+|++. ||.+..-..+++.|.+.||+|.++....
T Consensus 9 ~~~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (357)
T 1rkx_A 9 GKRVFVT---------GHTGFKGGWLSLWLQTMGATVKGYSLTA 43 (357)
T ss_dssp TCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEE---------CCCchHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3677655 4444555678899999999999987654
No 285
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=59.65 E-value=6.6 Score=31.51 Aligned_cols=102 Identities=18% Similarity=0.091 Sum_probs=58.5
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..|+|++.++. .--..+..+++.+.+. ||++.--........+..++.+..+ .+.+ +....
T Consensus 2 ~~~~ialsv~D-------~dK~~~v~~a~~~~~ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v--------~k~~--~eG~p 64 (134)
T 2xw6_A 2 HMRALALIAHD-------AKKEEMVAFCQRHREVLARFPLVATGTTGRRIEEATGLTVEKL--------LSGP--LGGDQ 64 (134)
T ss_dssp CSCEEEEEECG-------GGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEEC--------SCGG--GTHHH
T ss_pred CccEEEEEEec-------ccHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHHhhCceEEEE--------EecC--CCCcc
Confidence 45899999773 3446789999999999 9966533221111111012222111 1111 01234
Q ss_pred HHHHHHHhcCCCEEEECCC-------chHHHHHHHHHHhcCCCEEEEE
Q 009759 195 RIISEVARFKPDIIHASSP-------GIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~-------~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
.+...+++.+.|+|+.... ..........+-..++|++.+.
T Consensus 65 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~l 112 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNP 112 (134)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSH
T ss_pred hHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCH
Confidence 7889999999999887543 1123444555666788877543
No 286
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=59.65 E-value=73 Score=28.68 Aligned_cols=93 Identities=11% Similarity=-0.058 Sum_probs=52.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++...... ...-....+..+.+++.+.|+++.++....... ...
T Consensus 5 ~~~s~~Igvv~~~~~~-~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~ 56 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEE-LMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKD---------------------------SMV 56 (288)
T ss_dssp --CCCEEEEECBCCCC-SSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGG---------------------------TTH
T ss_pred cCCCCEEEEEecCCcc-ccHHHHHHHHHHHHHHHHcCCEEEEecCCcchh---------------------------HHH
Confidence 3445689888753210 012344556777788888999998875433210 012
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
.+.+.+...++|.|++....... ..+......++|+|+.-.
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 57 PIRYILETGSADGVIISKIEPND-PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTC-HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCccEEEEecCCCCc-HHHHHHhhCCCCEEEECC
Confidence 44555666799988775432211 122334557999987543
No 287
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=59.63 E-value=7.2 Score=38.20 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+.++|+|++..+..........+-..|+.+++
T Consensus 87 d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~ 125 (412)
T 4gqa_A 87 DWRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYC 125 (412)
T ss_dssp SHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEe
Confidence 466777778999999999877666666666677877664
No 288
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=59.52 E-value=57 Score=24.99 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=64.1
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEeccc-ChhhHHHHHH--cCcEEEecCC-CCCCcHHHHHHHHc---CCcEEEe-
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGML-LGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV- 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v-~~~~l~~~~~--~aDv~v~ps~-~e~~~~~ilEAma~---G~PvI~~- 421 (526)
+++.++.+.+ ..+.++....+.+....+.. +.++....+. ..|++++-.. .+.-|..+++.+.. ..|+|..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 4566666543 34555555555555554332 2345555443 4588887544 34456666666653 5666643
Q ss_pred CCCC---CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 ~~gg---~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
.... ..+.+ +.|..+++..+.+.+++.++|..+++.
T Consensus 82 ~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 82 AKNDHFYGKHCA---DAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CC---CTHHHHH---HTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHH---HhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3222 22333 567889999999999999999988763
No 289
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=59.50 E-value=30 Score=29.68 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=25.2
Q ss_pred cEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++|..+ | ..++.... +..+++.+ +.|++|+++....
T Consensus 1 MkiLiI~gs-p--r~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~ 40 (196)
T 3lcm_A 1 MKILIVYTH-P--NPTSFNAEILKQVQTNL-SKEHTVSTLDLYA 40 (196)
T ss_dssp CEEEEEECC-S--CTTSHHHHHHHHHHHHS-CTTSEEEEEETTT
T ss_pred CEEEEEEeC-C--CCCChHHHHHHHHHHHh-cCCCeEEEEEccc
Confidence 899999764 3 33454333 34455555 6799999987654
No 290
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=59.35 E-value=10 Score=37.40 Aligned_cols=92 Identities=7% Similarity=-0.037 Sum_probs=46.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCe-EEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDE-VMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~-V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.||||++.. | .+-..++..|.+.+.- -.++.+.+.......... ... ........+
T Consensus 3 ~mkvlviG~-------g---gre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~-----~~~--------~~~~d~~~l 59 (431)
T 3mjf_A 3 AMNILIIGN-------G---GREHALGWKAAQSPLADKIYVAPGNAGTALEPTLE-----NVD--------IAATDIAGL 59 (431)
T ss_dssp CEEEEEEEC-------S---HHHHHHHHHHTTCTTEEEEEEEECCHHHHHCTTCE-----ECC--------CCTTCHHHH
T ss_pred CcEEEEECC-------C---HHHHHHHHHHHhCCCCCEEEEECCCHHHhhhcccc-----eec--------CCcCCHHHH
Confidence 489999954 2 2456788999888652 233333321111110000 011 112234577
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
.+++++.++|+|+............-.....++|++
T Consensus 60 ~~~a~~~~id~vv~g~e~~l~~~~~~~l~~~Gi~~~ 95 (431)
T 3mjf_A 60 LAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIF 95 (431)
T ss_dssp HHHHHHTTEEEEEECSHHHHHTTHHHHHHHTTCCEE
T ss_pred HHHHHHhCcCEEEECCchHHHHHHHHHHHhcCCCee
Confidence 888888999999875322111111222344677765
No 291
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=59.21 E-value=55 Score=25.94 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=18.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
+++||+++.+. ......+...|. .|++|..+
T Consensus 3 ~~~~ILivdd~---------~~~~~~l~~~L~-~~~~v~~~ 33 (151)
T 3kcn_A 3 LNERILLVDDD---------YSLLNTLKRNLS-FDFEVTTC 33 (151)
T ss_dssp CCCEEEEECSC---------HHHHHHHHHHHT-TTSEEEEE
T ss_pred CCCeEEEEeCC---------HHHHHHHHHHhc-cCceEEEe
Confidence 45799888653 133444555554 58887754
No 292
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=59.17 E-value=14 Score=30.55 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=54.7
Q ss_pred cEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeCCCCCccccCcee--c--cccccCCCcc----ccccc-
Q 009759 119 RRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKL--I--GSRSFPCPWY----QKVPL- 188 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~--~--~~~~~~~~~~----~~~~~- 188 (526)
.++++|+ ||.+.. +..+++.|.+.|.+|+++ ............+. . .....+.... ..-.+
T Consensus 24 ~~~llIa--------GG~GItPl~sm~~~l~~~~~~v~l~-g~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~~ 94 (158)
T 3lrx_A 24 GKILAIG--------AYTGIVEVYPIAKAWQEIGNDVTTL-HVTFEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANMK 94 (158)
T ss_dssp SEEEEEE--------ETTHHHHHHHHHHHHHHHTCEEEEE-EECBGGGCCSHHHHHHHSSEEEECCBCCCTTSCHHHHHH
T ss_pred CeEEEEE--------ccCcHHHHHHHHHHHHhcCCcEEEE-EeCCHHHhhHHHHHHHHHhceEEEEeeccccccCCCCCC
Confidence 4787886 454443 789999999889999998 54432221111000 0 0111100000 00000
Q ss_pred --hhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 189 --SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 189 --~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.-.....+.+.+...+.|.|++..|..+.-......+..|+|..+
T Consensus 95 g~~G~v~~~l~~~l~~~~~~~vy~CGP~~mm~~v~~~l~~~Gv~~~v 141 (158)
T 3lrx_A 95 NVSQRLKEKVRELLESEDWDLVFMVGPVGDQKQVFEVVKEYGVPMKV 141 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHGGGTCCEEE
T ss_pred CCcccccHHHHHhhccCCCCEEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 000111233444444678888888877666555566778999433
No 293
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=59.13 E-value=20 Score=32.23 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=47.3
Q ss_pred EEEEEe-CCccHHHHHHHhc-CCCeEEecccCh-hhHHHHHH-cCcEEEecCCCCCCcHHHHHHHHcCCcEEEeCCCCCC
Q 009759 352 RIAFIG-DGPYREELEKMFT-GMPAVFTGMLLG-EELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP 427 (526)
Q Consensus 352 ~l~ivG-~g~~~~~l~~l~~-~~~V~~~g~v~~-~~l~~~~~-~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~~gg~~ 427 (526)
++.|+| .|..-..+.+.+. ..+.++.+.++. +++.+++. .+|++|--+..+..--.+..++.+|+|+|+...|...
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~ 81 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTA 81 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCH
Confidence 567777 4665555554443 335555554432 34555555 7899996655555544555678999999987666433
Q ss_pred c
Q 009759 428 D 428 (526)
Q Consensus 428 e 428 (526)
+
T Consensus 82 e 82 (245)
T 1p9l_A 82 E 82 (245)
T ss_dssp H
T ss_pred H
Confidence 3
No 294
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=59.00 E-value=1e+02 Score=27.71 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=49.1
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... ...-.......+.+++.+.|+++.++....... ...
T Consensus 13 ~~~s~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~ 62 (289)
T 2fep_A 13 SKKTTTVGVIIPDI---SSIFYSELARGIEDIATMYKYNIILSNSDQNME---------------------------KEL 62 (289)
T ss_dssp ---CCEEEEEESCT---TSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHH
T ss_pred cCCCCeEEEEeCCC---CCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHH---------------------------HHH
Confidence 34456898887531 112234556777788889999998765432100 011
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
...+.+...++|.|++....... ..+......++|+|+.-
T Consensus 63 ~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~ 102 (289)
T 2fep_A 63 HLLNTMLGKQVDGIVFMGGNITD-EHVAEFKRSPVPIVLAA 102 (289)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCH-HHHHHHHHSSSCEEEES
T ss_pred HHHHHHHhCCCCEEEEecCCCCH-HHHHHHHhcCCCEEEEc
Confidence 33344455689988876532111 11222345789988753
No 295
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=58.86 E-value=61 Score=25.07 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=58.4
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc---CcEEEecCCC-CCCcHHHHHHHHc---CCcEEEe
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-ETLGLVVLEAMSS---GIPVVGV 421 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~---aDv~v~ps~~-e~~~~~ilEAma~---G~PvI~~ 421 (526)
..++.++.+.+ ....+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+.. ++|+|..
T Consensus 15 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~l 94 (138)
T 2b4a_A 15 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLIL 94 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 44555555433 2233333333323333222223444444433 5888765443 3446677777754 5777644
Q ss_pred --CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhCH
Q 009759 422 --RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 461 (526)
Q Consensus 422 --~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~ 461 (526)
....... .. .- ..+++..+.+.+++..+|..++...
T Consensus 95 s~~~~~~~~-~~--~~-~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 95 TTGRHELIE-SS--EH-NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp ESCC--CCC-CS--SS-CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred ECCCCCHHH-HH--HH-HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 3333322 31 11 6788999999999999999887653
No 296
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=58.77 E-value=41 Score=30.43 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=51.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... ...-.......+-+++.+.|+++.++....... ...
T Consensus 5 ~~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~ 54 (293)
T 3l6u_A 5 SPKRNIVGFTIVND---KHEFAQRLINAFKAEAKANKYEALVATSQNSRI---------------------------SER 54 (293)
T ss_dssp ----CEEEEEESCS---CSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHH---------------------------HHH
T ss_pred CCCCcEEEEEEecC---CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHH---------------------------HHH
Confidence 34456899987532 112234556777788889999999886543210 011
Q ss_pred HHHHHHHhcCCCEEEECCCchHHH-HHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSPGIMVF-GALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~-~~~~~~~~~~~p~v~~~h 236 (526)
...+.+...++|.|++........ ..+......++|+|+.-.
T Consensus 55 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 55 EQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecC
Confidence 333444456899888865322211 223334567999887543
No 297
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=58.44 E-value=21 Score=33.86 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=60.9
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecC
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPS 399 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps 399 (526)
.-..|+.+|-= .-|-..++.++...++++++-+.+ ...+..++.+++.++.- . ..++.++++. .|++++.+
T Consensus 22 ~mirigiIG~G--~ig~~~~~~~~~~~~~~~lvav~d-~~~~~a~~~a~~~g~~~-~---y~d~~ell~~~~iDaV~I~t 94 (350)
T 4had_A 22 SMLRFGIISTA--KIGRDNVVPAIQDAENCVVTAIAS-RDLTRAREMADRFSVPH-A---FGSYEEMLASDVIDAVYIPL 94 (350)
T ss_dssp CCEEEEEESCC--HHHHHTHHHHHHHCSSEEEEEEEC-SSHHHHHHHHHHHTCSE-E---ESSHHHHHHCSSCSEEEECS
T ss_pred CccEEEEEcCh--HHHHHHHHHHHHhCCCeEEEEEEC-CCHHHHHHHHHHcCCCe-e---eCCHHHHhcCCCCCEEEEeC
Confidence 34568888741 112234577888889998886665 34455566665544410 1 2456667765 68888877
Q ss_pred CCCCCcHHHHHHHHcCCcEEEeC
Q 009759 400 ESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
....-.-.+.+|+.+|++|++=+
T Consensus 95 P~~~H~~~~~~al~aGkhVl~EK 117 (350)
T 4had_A 95 PTSQHIEWSIKAADAGKHVVCEK 117 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCchhHHHHHHHHhcCCEEEEeC
Confidence 65555557789999999999753
No 298
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=58.38 E-value=77 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC-eEEEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD-EVMVV 157 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~-~V~vi 157 (526)
..+++||++|.+. ......+.+.|.+.|+ +|..+
T Consensus 58 ~~~~~~ILiVdDd---------~~~~~~l~~~L~~~g~~~v~~a 92 (206)
T 3mm4_A 58 FLRGKRVLVVDDN---------FISRKVATGKLKKMGVSEVEQC 92 (206)
T ss_dssp TTTTCEEEEECSC---------HHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccCCCEEEEEeCC---------HHHHHHHHHHHHHcCCCeeeee
Confidence 3456799888663 2455667788888898 66554
No 299
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=58.35 E-value=60 Score=30.21 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=88.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+..+|+++.... ...-....+..+.+++.+.|+++.++.... . . ...
T Consensus 61 ~~~~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~-~--------------------------~~~ 109 (333)
T 3jvd_A 61 EHRSALVGVIVPDL---SNEYYSESLQTIQQDLKAAGYQMLVAEANS-V-Q--------------------------AQD 109 (333)
T ss_dssp ---CCEEEEEESCS---SSHHHHHHHHHHHHHHHHHTCEEEEEECCS-H-H--------------------------HHH
T ss_pred cCCCCEEEEEeCCC---cChHHHHHHHHHHHHHHHCCCEEEEECCCC-h-H--------------------------HHH
Confidence 34556898887531 112344566778888888999999876532 1 0 012
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
.+.+.+...++|-|++... +......++|+|+....... ...+.|.+-..
T Consensus 110 ~~~~~l~~~~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~-----------------------~~~~~V~~D~~ 159 (333)
T 3jvd_A 110 VVMESLISIQAAGIIHVPV-------VGSIAPEGIPMVQLTRGELG-----------------------PGFPRVLCDDE 159 (333)
T ss_dssp HHHHHHHHHTCSEEEECCC-------TTCCC-CCSCEEEECC---------------------------CCSCEEEECHH
T ss_pred HHHHHHHhCCCCEEEEcch-------HHHHhhCCCCEEEECccCCC-----------------------CCCCEEEEChH
Confidence 3445555669999988764 11234568998875433211 11334443333
Q ss_pred hHHHHHHHhcc-cCCCcEEEeecCCCCCCCCCCcccHHHHHhhcCCCCCCcEEEEEecccccccHHHHHHHHHhCCCcEE
Q 009759 275 AIGKDLEAARV-TAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARI 353 (526)
Q Consensus 275 ~~~~~l~~~~~-~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l 353 (526)
.......++.. ....++.++....+.. .........+..+.. .+...+...|......+.+.+.+.+...+ ...
T Consensus 160 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~--~~~~R~~Gf~~al~~--~g~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~a 234 (333)
T 3jvd_A 160 AGFFQLTESVLGGSGMNIAALVGEESLS--TTQERMRGISHAASI--YGAEVTFHFGHYSVESGEEMAQVVFNNGL-PDA 234 (333)
T ss_dssp HHHHHHHHHHCCSSSCEEEEEESCTTSH--HHHHHHHHHHHHHHH--TTCEEEEEECCSSHHHHHHHHHHHHHTCC-CSE
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCCCc--cHHHHHHHHHHHHHH--CCCCEEEecCCCCHHHHHHHHHHHhcCCC-CcE
Confidence 33222222211 1224565554321110 000001111111111 01113333377777888888888887776 777
Q ss_pred EEEeCC
Q 009759 354 AFIGDG 359 (526)
Q Consensus 354 ~ivG~g 359 (526)
+++.+.
T Consensus 235 i~~~nd 240 (333)
T 3jvd_A 235 LIVASP 240 (333)
T ss_dssp EEECCH
T ss_pred EEECCH
Confidence 777654
No 300
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=58.30 E-value=41 Score=31.27 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=24.5
Q ss_pred HhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 201 ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 201 ~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
...++|+|++..+..........+-..|+++++
T Consensus 69 ~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~ 101 (312)
T 3o9z_A 69 RGEGVDYLSIASPNHLHYPQIRMALRLGANALS 101 (312)
T ss_dssp TTCCCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred cCCCCcEEEECCCchhhHHHHHHHHHCCCeEEE
Confidence 456899999999877666666666667877664
No 301
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=58.27 E-value=53 Score=25.47 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=34.8
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCe-EEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDE-VMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~-V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
.++++|+++.+. ......+.+.|.+ .|++ |..+.. .
T Consensus 6 ~~~~~iLivdd~---------~~~~~~l~~~L~~~~~~~~v~~~~~-~-------------------------------- 43 (143)
T 3cnb_A 6 KNDFSILIIEDD---------KEFADMLTQFLENLFPYAKIKIAYN-P-------------------------------- 43 (143)
T ss_dssp ---CEEEEECSC---------HHHHHHHHHHHHHHCTTCEEEEECS-H--------------------------------
T ss_pred cCCceEEEEECC---------HHHHHHHHHHHHhccCccEEEEECC-H--------------------------------
Confidence 445799888653 2455677778888 8998 544321 1
Q ss_pred HHHHHHHHhcCCCEEEECC
Q 009759 194 PRIISEVARFKPDIIHASS 212 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~ 212 (526)
......+++.+||+|++..
T Consensus 44 ~~a~~~l~~~~~dlii~d~ 62 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDL 62 (143)
T ss_dssp HHHHHHHHHTCCSEEEEET
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 2445566677899999864
No 302
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=58.25 E-value=23 Score=34.98 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=48.6
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
++|||+++.. || +...+++.+++ .|+++.++.+.......... ...+. ........
T Consensus 23 m~~~IlIlG~-------g~---r~~al~~~~a~~~g~~~v~~~~~~~~~~~~~~-----~~~~~--------~~~~d~~~ 79 (452)
T 2qk4_A 23 MAARVLIIGS-------GG---REHTLAWKLAQSHHVKQVLVAPGNAGTACSEK-----ISNTA--------ISISDHTA 79 (452)
T ss_dssp CSEEEEEEEC-------SH---HHHHHHHHHTTCTTEEEEEEEECCGGGSBSSS-----EEECC--------CCSSCHHH
T ss_pred cCcEEEEECC-------CH---HHHHHHHHHHhcCCCCEEEEECCChhhhhhcc-----ccccc--------cCCCCHHH
Confidence 3589988853 22 34556677654 58887777654321111100 00011 11223457
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+.+++++.++|+|+............-.....++|++
T Consensus 80 l~~~~~~~~~d~V~~~~E~~~~~~~~~~l~~~gi~~~ 116 (452)
T 2qk4_A 80 LAQFCKEKKIEFVVVGPEAPLAAGIVGNLRSAGVQCF 116 (452)
T ss_dssp HHHHHHHHTCCEEEECSSHHHHTTHHHHHHHTTCCEE
T ss_pred HHHHHHHcCCCEEEECCcHHHHHHHHHHHHhcCCcEe
Confidence 7788888899999975432211111122245677765
No 303
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=58.23 E-value=12 Score=32.03 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=29.8
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.|||++|..+ .|.....+..+++.+.+.|++|.++....
T Consensus 4 mmkilii~~S-----~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 4 KPNILVLFYG-----YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCEEEEEECC-----SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CcEEEEEEeC-----ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 4799988653 45566667888888988999999986543
No 304
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=58.19 E-value=70 Score=27.90 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=44.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
++||+++.+. ......+...|...|++|..+... ....
T Consensus 5 ~~~ILivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~al 42 (238)
T 2gwr_A 5 RQRILVVDDD---------ASLAEMLTIVLRGEGFDTAVIGDG---------------------------------TQAL 42 (238)
T ss_dssp CCEEEEECSC---------HHHHHHHHHHHHHTTCEEEEECCG---------------------------------GGHH
T ss_pred cCeEEEEeCC---------HHHHHHHHHHHHHCCCEEEEECCH---------------------------------HHHH
Confidence 4689888653 145566777788889987644221 1233
Q ss_pred HHHHhcCCCEEEECC--CchHHHHHH-HHHHhcCCCEEEEEec
Q 009759 198 SEVARFKPDIIHASS--PGIMVFGAL-IIAKLLCVPIVMSYHT 237 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~--~~~~~~~~~-~~~~~~~~p~v~~~h~ 237 (526)
..+.+.+||+|++.. +...++..+ .+.....+|+|+....
T Consensus 43 ~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 43 TAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp HHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 445566899999864 222222221 1222347887765443
No 305
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=58.13 E-value=21 Score=28.71 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=30.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+++.. ...|.....+..+++.|.+.|++|.++....
T Consensus 2 ~ki~I~y~----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 2 SKVLIVFG----SSTGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp CEEEEEEE----CSSSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CeEEEEEE----CCCchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 58877754 2346677888899999999999999886543
No 306
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=58.03 E-value=16 Score=33.99 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=23.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
.|||++. ||.+..-..+++.|.+.||+|.++.
T Consensus 3 ~~~ilVt---------GatG~iG~~l~~~L~~~g~~v~~~~ 34 (321)
T 1e6u_A 3 KQRVFIA---------GHRGMVGSAIRRQLEQRGDVELVLR 34 (321)
T ss_dssp CEEEEEE---------TTTSHHHHHHHHHHTTCTTEEEECC
T ss_pred CCEEEEE---------CCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 3787655 4445556778899999999988764
No 307
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=57.94 E-value=60 Score=26.99 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
...++|||++-++. +|.+ .-..+.+.|.++||+|.=+.+.
T Consensus 16 ~~~~~MkIaIgsDh------aG~~-lK~~i~~~L~~~G~eV~D~G~~ 55 (169)
T 3ph3_A 16 PRGSHMKIGIGSDH------GGYN-LKREIADFLKKRGYEVIDFGTH 55 (169)
T ss_dssp -----CEEEEEECG------GGHH-HHHHHHHHHHHTTCEEEECCCC
T ss_pred ccCCCCEEEEEeCc------hHHH-HHHHHHHHHHHCCCEEEEcCCC
Confidence 35567999888875 3433 4467889999999999877653
No 308
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=57.81 E-value=24 Score=26.92 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=58.3
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH-----cCCcEEEe-
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV- 421 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma-----~G~PvI~~- 421 (526)
++.++.+.+ ..+.+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. .+.|+|.-
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 83 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLT 83 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEe
Confidence 455666543 2333444443333333322233444444333 477776433 2334566777765 35777654
Q ss_pred CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 422 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 422 ~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
..... .+.+ +.|..+++..+.+.+++.++|..++.
T Consensus 84 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 84 ARGEEEDRVRGL---ETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp ETTHHHHHHTTC---CCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 32221 2233 56778999999999999999987764
No 309
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=57.80 E-value=70 Score=25.48 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=23.1
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
++.+|++|... ...| ..-..+++.|.+.|++|..+.+.
T Consensus 13 ~p~~IavIGaS---~~~g---~~G~~~~~~L~~~G~~V~~vnp~ 50 (138)
T 1y81_A 13 EFRKIALVGAS---KNPA---KYGNIILKDLLSKGFEVLPVNPN 50 (138)
T ss_dssp -CCEEEEETCC---SCTT---SHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCeEEEEeec---CCCC---CHHHHHHHHHHHCCCEEEEeCCC
Confidence 45689999432 1112 33345677788999986665543
No 310
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=57.72 E-value=95 Score=28.63 Aligned_cols=41 Identities=2% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
.+..+|+++.... ...-....+..+.+++.+.|+++.+...
T Consensus 58 ~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 98 (332)
T 2hsg_A 58 KKTTTVGVIIPDI---SNIFYAELARGIEDIATMYKYNIILSNS 98 (332)
T ss_dssp C-CCEEEEEEC-----CCSHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCEEEEEeCCC---CCcHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3456898887531 1122345567777888889999988653
No 311
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=57.69 E-value=35 Score=31.68 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=80.6
Q ss_pred HHHHHhhcCcEEEeC--ChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH---HHHHhhcCCCCCCcEEEEEecc
Q 009759 258 VIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLIVHVGRL 332 (526)
Q Consensus 258 ~~~~~~~~ad~ii~~--S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~vG~l 332 (526)
..+.+-+.+|.|+.= .+...+.+.++. .+-| -|+-|.+..+|...-. .+++.++ .-+...|+|+|-.
T Consensus 89 Tarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPV-INag~g~~~HPtQ~LaDl~Ti~e~~g--~l~glkva~vGD~ 160 (306)
T 4ekn_B 89 TIRVISGYADIIVLRHPSEGAARLASEYS-----QVPI-INAGDGSNQHPTQTLLDLYTIMREIG--RIDGIKIAFVGDL 160 (306)
T ss_dssp HHHHHHHHCSEEEEECSSTTHHHHHHHHC-----SSCE-EESCSSSSCCHHHHHHHHHHHHHHHS--CSTTCEEEEESCT
T ss_pred HHHHHHHhCcEEEEEcCChHHHHHHHHhC-----CCCE-EeCCCCCCcCcHHHHHHHHHHHHHhC--CcCCCEEEEEcCC
Confidence 345556668988773 345555555543 3334 4666656666653221 2333442 3467889999976
Q ss_pred cccccHHHHHHHHHhCCCcEEEEEeCCcc--HHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC-CCCCc
Q 009759 333 GVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLG 405 (526)
Q Consensus 333 ~~~Kg~~~li~a~~~l~~~~l~ivG~g~~--~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~-~e~~~ 405 (526)
....-..-++.++..++++++.+++...+ .+.+.+.+++.+..+.-. +++.+.+..||++..... .|.++
T Consensus 161 ~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvy~~~~q~er~~ 233 (306)
T 4ekn_B 161 KYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEK---ESLDDLDDDIDVLYVTRIQKERFP 233 (306)
T ss_dssp TTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEE---SCGGGCCTTCSEEEECCCCGGGCC
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEE---cCHHHHhcCCCEEEeCCcccccCC
Confidence 55556788889999988899999995322 233333333333222111 355567889999887644 24443
No 312
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=57.58 E-value=26 Score=32.56 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
||.+..-..+++.|.+.||+|.++...
T Consensus 8 GatG~iG~~l~~~L~~~g~~V~~~~r~ 34 (330)
T 2c20_A 8 GGAGYIGSHAVKKLVDEGLSVVVVDNL 34 (330)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 444455677889999999999998754
No 313
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=57.49 E-value=52 Score=26.09 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=21.3
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--eEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--EVMVV 157 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--~V~vi 157 (526)
+++||+++.+. ......+.+.|.+.|+ +|..+
T Consensus 3 ~~~~ILivddd---------~~~~~~l~~~L~~~g~~~~v~~~ 36 (152)
T 3heb_A 3 LSVTIVMIEDD---------LGHARLIEKNIRRAGVNNEIIAF 36 (152)
T ss_dssp --CEEEEECCC---------HHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCceEEEEeCC---------HHHHHHHHHHHHhCCCcceEEEe
Confidence 45899888653 2556778888899998 44443
No 314
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=57.48 E-value=1.1e+02 Score=27.49 Aligned_cols=91 Identities=11% Similarity=-0.120 Sum_probs=49.8
Q ss_pred CCcEEEEEecc-CCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEP-SPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~-~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
+..+|+++... .......-.......+.+++.+.|+++.+......... ...
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---------------------------~~~ 55 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQ---------------------------IDI 55 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTC---------------------------CHH
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHH---------------------------HHH
Confidence 44578888643 10001123445667788888999999877543221100 113
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
+.+.+...++|.|++....... ..+......++|+|+.-
T Consensus 56 ~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 56 YRDLIRSGNVDGFVLSSINYND-PRVQFLLKQKFPFVAFG 94 (287)
T ss_dssp HHHHHHTTCCSEEEECSCCTTC-HHHHHHHHTTCCEEEES
T ss_pred HHHHHHcCCCCEEEEeecCCCc-HHHHHHHhcCCCEEEEC
Confidence 4445556689988876432211 12222345689988753
No 315
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=57.46 E-value=29 Score=33.15 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.+.|++|.++....
T Consensus 35 GatG~IG~~l~~~L~~~g~~V~~~~r~~ 62 (381)
T 1n7h_A 35 GITGQDGSYLTEFLLGKGYEVHGLIRRS 62 (381)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEecCC
Confidence 3444555678899999999999987644
No 316
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=57.19 E-value=13 Score=35.02 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=27.2
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
..|||++. ||.+..-..+++.|.+.||+|.++.....
T Consensus 12 ~~M~ilVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~~~ 48 (342)
T 2x4g_A 12 AHVKYAVL---------GATGLLGHHAARAIRAAGHDLVLIHRPSS 48 (342)
T ss_dssp CCCEEEEE---------STTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred cCCEEEEE---------CCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence 34788666 44445567788999999999999886543
No 317
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=57.18 E-value=38 Score=32.08 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=57.7
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhC-CCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEec
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 398 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l-~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~p 398 (526)
+...|+++|-=. -| ...+.++... ++++++-+-+ ...+..+...++.++.. + +++.++++ .+|++++.
T Consensus 12 ~~~rvgiiG~G~--~g-~~~~~~l~~~~~~~~lvav~d-~~~~~~~~~~~~~~~~~--~---~~~~~ll~~~~~D~V~i~ 82 (354)
T 3q2i_A 12 RKIRFALVGCGR--IA-NNHFGALEKHADRAELIDVCD-IDPAALKAAVERTGARG--H---ASLTDMLAQTDADIVILT 82 (354)
T ss_dssp SCEEEEEECCST--TH-HHHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHHCCEE--E---SCHHHHHHHCCCSEEEEC
T ss_pred CcceEEEEcCcH--HH-HHHHHHHHhCCCCeEEEEEEc-CCHHHHHHHHHHcCCce--e---CCHHHHhcCCCCCEEEEC
Confidence 456788887521 12 2355777777 7888775544 23444555554445532 2 35666676 78999987
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 399 SESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 399 s~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+......-.+.+|+..|++|++-+
T Consensus 83 tp~~~h~~~~~~al~~gk~v~~EK 106 (354)
T 3q2i_A 83 TPSGLHPTQSIECSEAGFHVMTEK 106 (354)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCcHHHHHHHHHHHHCCCCEEEeC
Confidence 765444556788999999998753
No 318
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=57.08 E-value=71 Score=25.27 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=66.8
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcC-CCeEEecc-cChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH---cCCcEEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTG-MPAVFTGM-LLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~-~~V~~~g~-v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~ 420 (526)
..+++|+.+.+ ....+...... .+....+. -+.++....+.. .|++|+-... +.-|..+++.+. .++|||.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 45677777554 34556666665 46665533 333566666554 4888875442 344566666654 3677775
Q ss_pred eC-CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 421 VR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 421 ~~-~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.. .... ...+ ..|..+++..+.+.+++.++|..++.
T Consensus 85 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 85 FTMHQGSAFALKAF---EAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp EESCCSHHHHHHHH---HTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHH---HCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 43 3221 2233 56788999999999999999998876
No 319
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=57.02 E-value=9.3 Score=36.45 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=51.2
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCC-ccccCceeccccccCCCccccccchhc
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVP-QEFYGAKLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (526)
+..++|||+||.. |+.+. ..+++.|.+. |++|..++...... .... ...+ .+
T Consensus 23 ~~m~~~rigiIG~-------G~~g~--~~~~~~l~~~~~~~l~av~d~~~~~~~~~a--~~~g-----~~---------- 76 (350)
T 3rc1_A 23 ANANPIRVGVIGC-------ADIAW--RRALPALEAEPLTEVTAIASRRWDRAKRFT--ERFG-----GE---------- 76 (350)
T ss_dssp ---CCEEEEEESC-------CHHHH--HTHHHHHHHCTTEEEEEEEESSHHHHHHHH--HHHC-----SE----------
T ss_pred CCCCceEEEEEcC-------cHHHH--HHHHHHHHhCCCeEEEEEEcCCHHHHHHHH--HHcC-----CC----------
Confidence 3445689999953 33222 2466777776 67777665433110 0000 0001 11
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
....+.+++...++|+|++..+..........+...|+++++
T Consensus 77 ~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~ 118 (350)
T 3rc1_A 77 PVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLA 118 (350)
T ss_dssp EEESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEE
T ss_pred CcCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEEE
Confidence 112455667667899999998876665555556667777654
No 320
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=56.94 E-value=12 Score=35.93 Aligned_cols=95 Identities=7% Similarity=-0.055 Sum_probs=52.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
+.+++||++|.. |.. ....++..+...|.++..++........... . .+.. .....
T Consensus 23 Mm~~irvgiiG~-------G~~--~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a-~-----~~~~---------~~~~~ 78 (361)
T 3u3x_A 23 MMDELRFAAVGL-------NHN--HIYGQVNCLLRAGARLAGFHEKDDALAAEFS-A-----VYAD---------ARRIA 78 (361)
T ss_dssp ---CCEEEEECC-------CST--THHHHHHHHHHTTCEEEEEECSCHHHHHHHH-H-----HSSS---------CCEES
T ss_pred hccCcEEEEECc-------CHH--HHHHHHHHhhcCCcEEEEEEcCCHHHHHHHH-H-----HcCC---------CcccC
Confidence 345689999964 221 1233555566678888877754321100000 0 0000 01123
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++...++|+|++..+..........+...|+++++
T Consensus 79 ~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~ 117 (361)
T 3u3x_A 79 TAEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLV 117 (361)
T ss_dssp CHHHHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEE
Confidence 456677777899999999876665555556667877664
No 321
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=56.76 E-value=51 Score=30.18 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=52.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+.+|+++.... ...-.......+.+++.+.|+++.+........ ......
T Consensus 2 ~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~~~i 51 (313)
T 3m9w_A 2 EVKIGMAIDDL---RLERWQKDRDIFVKKAESLGAKVFVQSANGNEE---------------------------TQMSQI 51 (313)
T ss_dssp -CEEEEEESCC---SSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHH---------------------------HHHHHH
T ss_pred CcEEEEEeCCC---CChHHHHHHHHHHHHHHHcCCEEEEECCCCCHH---------------------------HHHHHH
Confidence 35788887542 122344667788888999999999886532210 011334
Q ss_pred HHHHhcCCCEEEECCCchHH-HHHHHHHHhcCCCEEEEEe
Q 009759 198 SEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~-~~~~~~~~~~~~p~v~~~h 236 (526)
+.+...++|.|++....... ...+......++|+|+.-.
T Consensus 52 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 52 ENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESS
T ss_pred HHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECC
Confidence 44455689988886543221 1223344567999887543
No 322
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=56.76 E-value=21 Score=33.88 Aligned_cols=39 Identities=15% Similarity=-0.024 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++...++|+|++..+..........+-..|+++++
T Consensus 58 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhV~~ 96 (352)
T 3kux_A 58 DPQMLFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVV 96 (352)
T ss_dssp CHHHHHHCSSCCEEEECSCTTTHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCcEEE
Confidence 456677777899999988766655555556667776664
No 323
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=56.72 E-value=71 Score=25.19 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=63.2
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCC--eEEecccChhhHHHHHH---------cCcEEEecCCC-CCCcHHHHHHHHc--
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMP--AVFTGMLLGEELSQAYA---------SGDVFVMPSES-ETLGLVVLEAMSS-- 414 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~--V~~~g~v~~~~l~~~~~---------~aDv~v~ps~~-e~~~~~ilEAma~-- 414 (526)
..++.|+.+.+ ....++......+ ..+...-+.++....+. ..|++++-... +.-|..+++.+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 35666776543 3344555554432 23333333356666665 36888875443 3346667777653
Q ss_pred ---CCcEEEe-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 415 ---GIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 415 ---G~PvI~~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
++|||.- ............+.|..+++..+.+.+++.++|..++
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 5677654 3332222111115678899999999999999998774
No 324
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=56.71 E-value=82 Score=29.38 Aligned_cols=115 Identities=10% Similarity=0.012 Sum_probs=61.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC-----CCccccCceeccccccCCCccccccc----h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG-----VPQEFYGAKLIGSRSFPCPWYQKVPL----S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 189 (526)
+||++++..-+ ..|....+..+.+.....|++|.-+..+.. ...+.....+..+....-........ .
T Consensus 2 k~i~IltsGGd---apGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~ 78 (319)
T 1zxx_A 2 KRIGILTSGGD---APGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAE 78 (319)
T ss_dssp CEEEEEECSSC---CTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTS
T ss_pred CEEEEEccCCC---chhHHHHHHHHHHHHHHCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCC
Confidence 58999987633 358888899999998888987766643321 00111110111111111111111111 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.....++.+.+++++.|.+++-.-....-.+..+.+ .++|+|-.--.
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~-~~i~vvgiPkT 125 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR-HGFNSIGLPGT 125 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH-TTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHH-hCCCEEEEeec
Confidence 123457778888999998887654333333333333 48888764444
No 325
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=56.63 E-value=69 Score=28.20 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=61.3
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCC-CCCCcHHHHHHHHc---CCcEEEe-
Q 009759 350 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV- 421 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~-~e~~~~~ilEAma~---G~PvI~~- 421 (526)
..++.|+-+.+ ....+.......+..+...-+.++..+.+. ..|++|+-.. .+.-|..+++.+.. .+|||.-
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 102 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLT 102 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 34555555443 223333333333333333333344444443 3588876543 34456667766643 5777654
Q ss_pred CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 422 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 422 ~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
............+.|..+++..+.+.+++..+|..++.
T Consensus 103 ~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 103 ARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 33322222111167888999999999999999988875
No 326
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=56.46 E-value=61 Score=28.58 Aligned_cols=28 Identities=14% Similarity=0.028 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
-|=...+.+++..|.++|++|.++....
T Consensus 17 vGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 17 VGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3445557899999999999998887654
No 327
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=56.40 E-value=70 Score=27.86 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=62.1
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHHc--CCcEEEe-CC
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-RA 423 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma~--G~PvI~~-~~ 423 (526)
.++.|+.+.+ ..+.+.......+..+...-+.++....+. ..|++|+-... +.-|..+++.+.. ++|||.- ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 4566666543 233444444433333332223355555444 35888865432 3446666766653 6787754 33
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
..........+.|..+++..+.+.+++..+|..++.
T Consensus 86 ~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 322222111156888999999999999999988764
No 328
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=56.27 E-value=11 Score=37.15 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeE---EecccChhhHHHHHH--cCcEE
Q 009759 321 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAV---FTGMLLGEELSQAYA--SGDVF 395 (526)
Q Consensus 321 ~~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~---~~g~v~~~~l~~~~~--~aDv~ 395 (526)
.+...|+++|-= .-|...++.++...++++++-+-+. ..+..+.+.++.++. ...+ +++.+++. ..|++
T Consensus 81 ~~~irigiIG~G--~~g~~~~~~~l~~~~~~~lvav~d~-~~~~~~~~a~~~g~~~~~~~~~---~~~~~ll~~~~vD~V 154 (433)
T 1h6d_A 81 DRRFGYAIVGLG--KYALNQILPGFAGCQHSRIEALVSG-NAEKAKIVAAEYGVDPRKIYDY---SNFDKIAKDPKIDAV 154 (433)
T ss_dssp CCCEEEEEECCS--HHHHHTHHHHTTTCSSEEEEEEECS-CHHHHHHHHHHTTCCGGGEECS---SSGGGGGGCTTCCEE
T ss_pred CCceEEEEECCc--HHHHHHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCCccccccc---CCHHHHhcCCCCCEE
Confidence 455678888851 1122346667777777887655543 334444444443332 1112 34555666 68999
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
++.+......-.+.+|+..|++|++-.
T Consensus 155 ~iatp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 155 YIILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EEcCCchhHHHHHHHHHHCCCcEEEcC
Confidence 988765555667788999999999754
No 329
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=56.26 E-value=27 Score=33.15 Aligned_cols=91 Identities=7% Similarity=0.026 Sum_probs=58.2
Q ss_pred CcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHH--HcCcEEEecCC
Q 009759 323 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVFVMPSE 400 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~--~~aDv~v~ps~ 400 (526)
...|+++|-=. -| ...+.++...++++++-+-+ ...+..+...+..++.. .+++.+++ ...|++++.+.
T Consensus 5 ~~~vgiiG~G~--~g-~~~~~~l~~~~~~~lvav~d-~~~~~~~~~~~~~g~~~-----~~~~~~~l~~~~~D~V~i~tp 75 (354)
T 3db2_A 5 PVGVAAIGLGR--WA-YVMADAYTKSEKLKLVTCYS-RTEDKREKFGKRYNCAG-----DATMEALLAREDVEMVIITVP 75 (354)
T ss_dssp CEEEEEECCSH--HH-HHHHHHHTTCSSEEEEEEEC-SSHHHHHHHHHHHTCCC-----CSSHHHHHHCSSCCEEEECSC
T ss_pred cceEEEEccCH--HH-HHHHHHHHhCCCcEEEEEEC-CCHHHHHHHHHHcCCCC-----cCCHHHHhcCCCCCEEEEeCC
Confidence 34677777411 11 34677888888888775544 23444455444434422 25677777 45899988776
Q ss_pred CCCCcHHHHHHHHcCCcEEEeC
Q 009759 401 SETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 401 ~e~~~~~ilEAma~G~PvI~~~ 422 (526)
.....-.+.+|+..|++|++-+
T Consensus 76 ~~~h~~~~~~al~~gk~vl~EK 97 (354)
T 3db2_A 76 NDKHAEVIEQCARSGKHIYVEK 97 (354)
T ss_dssp TTSHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHcCCEEEEcc
Confidence 5555566788999999999754
No 330
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=56.25 E-value=83 Score=28.80 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
+.++..+..+|++++..+..........+...+++.++.
T Consensus 56 l~el~~~~~~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi 94 (288)
T 2nu8_A 56 VREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIIT 94 (288)
T ss_dssp HHHHHHHHCCCEEEECCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred HHHHhhcCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 344455558999999988777666666677789997654
No 331
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=56.22 E-value=37 Score=25.98 Aligned_cols=10 Identities=30% Similarity=0.341 Sum_probs=5.4
Q ss_pred CcEEEEEecc
Q 009759 323 KPLIVHVGRL 332 (526)
Q Consensus 323 ~~~i~~vG~l 332 (526)
...|++.|.+
T Consensus 35 G~~~v~TG~l 44 (109)
T 2k6g_A 35 GLIFVITGVL 44 (109)
T ss_dssp TCEEEEESBC
T ss_pred CCEEEEeeeC
Confidence 3455555655
No 332
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=55.94 E-value=58 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=21.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
++|+++.+. ......+.+.|.+.|++|..+
T Consensus 2 ~~iliv~~~---------~~~~~~l~~~l~~~g~~v~~~ 31 (119)
T 2j48_A 2 GHILLLEEE---------DEAATVVCEMLTAAGFKVIWL 31 (119)
T ss_dssp CEEEEECCC---------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEeCC---------HHHHHHHHHHHHhCCcEEEEe
Confidence 688888653 245667788888899987754
No 333
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=55.50 E-value=31 Score=32.81 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.+.|++|.++....
T Consensus 31 GatG~iG~~l~~~L~~~g~~V~~~~r~~ 58 (375)
T 1t2a_A 31 GITGQDGSYLAEFLLEKGYEVHGIVRRS 58 (375)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCc
Confidence 4444555678899999999999987654
No 334
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=55.46 E-value=36 Score=32.08 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=55.7
Q ss_pred EEEEEecccccccHHHHHHHHH-hCCCcEEEEEeCCccHHHHHHHhcCCCe--EEecccChhhHHHHHHc--CcEEEecC
Q 009759 325 LIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPA--VFTGMLLGEELSQAYAS--GDVFVMPS 399 (526)
Q Consensus 325 ~i~~vG~l~~~Kg~~~li~a~~-~l~~~~l~ivG~g~~~~~l~~l~~~~~V--~~~g~v~~~~l~~~~~~--aDv~v~ps 399 (526)
.|+++|-=. -| ...+.++. ..++++++-+-+ ...+..++..++.++ .. .+++.+++.. .|++++.+
T Consensus 4 rigiIG~G~--~g-~~~~~~l~~~~~~~~l~av~d-~~~~~~~~~~~~~g~~~~~-----~~~~~~ll~~~~~D~V~i~t 74 (344)
T 3mz0_A 4 RIGVIGTGA--IG-KEHINRITNKLSGAEIVAVTD-VNQEAAQKVVEQYQLNATV-----YPNDDSLLADENVDAVLVTS 74 (344)
T ss_dssp EEEEECCSH--HH-HHHHHHHHHTCSSEEEEEEEC-SSHHHHHHHHHHTTCCCEE-----ESSHHHHHHCTTCCEEEECS
T ss_pred EEEEECccH--HH-HHHHHHHHhhCCCcEEEEEEc-CCHHHHHHHHHHhCCCCee-----eCCHHHHhcCCCCCEEEECC
Confidence 466776411 11 24556666 678888775554 334555555555442 22 2466677776 89999877
Q ss_pred CCCCCcHHHHHHHHcCCcEEEeC
Q 009759 400 ESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
......-.+.+++..|++|++-+
T Consensus 75 p~~~h~~~~~~al~~Gk~vl~EK 97 (344)
T 3mz0_A 75 WGPAHESSVLKAIKAQKYVFCEK 97 (344)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECS
T ss_pred CchhHHHHHHHHHHCCCcEEEcC
Confidence 65555556778999999998743
No 335
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=55.39 E-value=62 Score=25.15 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=61.7
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCC----CeEEecccChhhHHHHHHc--------CcEEEecCCC-CCCcHHHHHHHH--
Q 009759 350 EARIAFIGDGP-YREELEKMFTGM----PAVFTGMLLGEELSQAYAS--------GDVFVMPSES-ETLGLVVLEAMS-- 413 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~----~V~~~g~v~~~~l~~~~~~--------aDv~v~ps~~-e~~~~~ilEAma-- 413 (526)
..+++|+.+.+ ..+.+....... .|.... +.++....+.. .|++|+-... +.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAK--SGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDD 84 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEES--SHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEEC--CHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 35667777543 233444444322 333332 33566666653 6888875442 344667777775
Q ss_pred ---cCCcEEEeC-CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 414 ---SGIPVVGVR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 414 ---~G~PvI~~~-~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.++|+|... ...........+.|..+++..+.+.+++.+++.....
T Consensus 85 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 85 SSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 457776543 3222111111156788999999999999998765443
No 336
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=55.36 E-value=21 Score=34.13 Aligned_cols=90 Identities=13% Similarity=-0.015 Sum_probs=50.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
+++||++|.. |..+. ..++.|.+. |.+|..++......... ...+... ....
T Consensus 4 ~~~~vgiiG~-------G~~g~---~~~~~l~~~~~~~l~av~d~~~~~~~~-------a~~~g~~----------~~~~ 56 (359)
T 3e18_A 4 KKYQLVIVGY-------GGMGS---YHVTLASAADNLEVHGVFDILAEKREA-------AAQKGLK----------IYES 56 (359)
T ss_dssp CCEEEEEECC-------SHHHH---HHHHHHHTSTTEEEEEEECSSHHHHHH-------HHTTTCC----------BCSC
T ss_pred CcCcEEEECc-------CHHHH---HHHHHHHhCCCcEEEEEEcCCHHHHHH-------HHhcCCc----------eeCC
Confidence 4689999953 33333 455667666 66766555432211000 0011111 1124
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.+.++|+|++..+..........+...|+++++
T Consensus 57 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~ 94 (359)
T 3e18_A 57 YEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVC 94 (359)
T ss_dssp HHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEe
Confidence 55677777899999998876655555555566776664
No 337
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=55.32 E-value=23 Score=33.71 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=25.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEG 162 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~ 162 (526)
.|||++. ||.+..-..+++.|.+. ||+|.++.....
T Consensus 24 ~~~vlVt---------GatG~iG~~l~~~L~~~~g~~V~~~~r~~~ 60 (372)
T 3slg_A 24 AKKVLIL---------GVNGFIGHHLSKRILETTDWEVFGMDMQTD 60 (372)
T ss_dssp CCEEEEE---------SCSSHHHHHHHHHHHHHSSCEEEEEESCCT
T ss_pred CCEEEEE---------CCCChHHHHHHHHHHhCCCCEEEEEeCChh
Confidence 3577655 44445567788899888 999999986543
No 338
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=55.32 E-value=16 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=31.5
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|++++....|+. ....+..+.++.++...||+|.|+...++
T Consensus 3 k~~~vv~~~P~g--~~~~~~al~~a~a~~a~~~~v~vff~~DG 43 (119)
T 2d1p_B 3 RIAFVFSTAPHG--TAAGREGLDALLATSALTDDLAVFFIADG 43 (119)
T ss_dssp CEEEEECSCTTT--STHHHHHHHHHHHHHTTCSCEEEEECGGG
T ss_pred EEEEEEcCCCCC--cHHHHHHHHHHHHHHhCCCCEEEEEehHH
Confidence 688998876642 23446678999999999999999987654
No 339
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=54.94 E-value=1e+02 Score=27.26 Aligned_cols=86 Identities=10% Similarity=0.145 Sum_probs=46.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
..+|+++.... ...-.......+-+++.+.|+++.++....... ......
T Consensus 3 s~~Ig~i~~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~---------------------------~~~~~~ 52 (275)
T 3d8u_A 3 AYSIALIIPSL---FEKACAHFLPSFQQALNKAGYQLLLGYSDYSIE---------------------------QEEKLL 52 (275)
T ss_dssp -CEEEEEESCS---SCHHHHHHHHHHHHHHHHTSCEECCEECTTCHH---------------------------HHHHHH
T ss_pred ceEEEEEeCCC---ccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHH---------------------------HHHHHH
Confidence 35788887531 111233456677788889999988765432100 001333
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
+.+...++|.|++....... ..+......++|+|+.
T Consensus 53 ~~l~~~~vdgii~~~~~~~~-~~~~~l~~~~iPvV~~ 88 (275)
T 3d8u_A 53 STFLESRPAGVVLFGSEHSQ-RTHQLLEASNTPVLEI 88 (275)
T ss_dssp HHHHTSCCCCEEEESSCCCH-HHHHHHHHHTCCEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCH-HHHHHHHhCCCCEEEE
Confidence 44455688976665432111 1122234568998875
No 340
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=54.85 E-value=19 Score=31.79 Aligned_cols=39 Identities=5% Similarity=0.028 Sum_probs=30.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
.+||.++|+.. ...-|=......|++.|+++|+.|..+=
T Consensus 2 ~~mk~i~Itgt---~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIGT---DTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEES---SSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeC---CCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 45888888764 3345777788999999999999998863
No 341
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=54.83 E-value=25 Score=34.90 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=56.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+|++++.+ ......+++.|.+.|.+|..+................ ....+. ....+.. -.-...+.
T Consensus 312 gkrv~i~~~----------~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~l-l~~~~~-~~~~v~~-~~d~~~l~ 378 (458)
T 1mio_B 312 GKKVALLGD----------PDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAM-LAEAGI-EGSKVKV-EGDFFDVH 378 (458)
T ss_dssp TCEEEEEEC----------HHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHH-HHTTTC-CSCEEEE-SCBHHHHH
T ss_pred CCEEEEEcC----------chHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHH-HHhcCC-CCCEEEE-CCCHHHHH
Confidence 358877754 3788999999999999999887655322110000000 000000 0000000 01334678
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+.+++.+||+++.+... ..++++.++|++.
T Consensus 379 ~~i~~~~pDl~ig~~~~------~~~a~k~gip~~~ 408 (458)
T 1mio_B 379 QWIKNEGVDLLISNTYG------KFIAREENIPFVR 408 (458)
T ss_dssp HHHHHSCCSEEEESGGG------HHHHHHHTCCEEE
T ss_pred HHHHhcCCCEEEeCcch------HHHHHHcCCCEEE
Confidence 88889999999988642 2345678999884
No 342
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=54.80 E-value=12 Score=34.63 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=24.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~ 161 (526)
|||++. ||.+..-..+++.|.+. ||+|.++....
T Consensus 3 ~~vlVt---------GatG~iG~~l~~~L~~~~~g~~V~~~~r~~ 38 (312)
T 2yy7_A 3 PKILII---------GACGQIGTELTQKLRKLYGTENVIASDIRK 38 (312)
T ss_dssp CCEEEE---------TTTSHHHHHHHHHHHHHHCGGGEEEEESCC
T ss_pred ceEEEE---------CCccHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 677555 44445556788888888 89999987543
No 343
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=54.60 E-value=12 Score=32.77 Aligned_cols=33 Identities=6% Similarity=0.151 Sum_probs=26.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||+++ |.+..-..+++.|.+.|++|+++..+.
T Consensus 1 M~iiIi----------G~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIII----------GGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEE----------CCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEE----------CCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 677666 235778899999999999999997544
No 344
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=54.46 E-value=22 Score=31.44 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=30.0
Q ss_pred hhHHHHHHcCcEEEecCCCC-----------CCcHHHHHHHHcCCcEEEeCCC
Q 009759 383 EELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVVGVRAG 424 (526)
Q Consensus 383 ~~l~~~~~~aDv~v~ps~~e-----------~~~~~ilEAma~G~PvI~~~~g 424 (526)
++..+.+.+||.+++|- .+ ++--.+-|+...|+|++.+..|
T Consensus 71 ~d~~~~l~~ad~I~lpG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 71 ADPLAAIEKAEIIIVGG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp SCHHHHHHHCSEEEECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred ccHHHHHhcCCEEEECC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 34557778899999886 22 3444677888899999988765
No 345
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=54.06 E-value=72 Score=24.45 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=20.4
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEE
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMV 156 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~v 156 (526)
.+||+++.+. ......+...|...|++|..
T Consensus 3 ~~~Ilivdd~---------~~~~~~l~~~L~~~g~~v~~ 32 (132)
T 3crn_A 3 LKRILIVDDD---------TAILDSTKQILEFEGYEVEI 32 (132)
T ss_dssp CCEEEEECSC---------HHHHHHHHHHHHHTTCEEEE
T ss_pred ccEEEEEeCC---------HHHHHHHHHHHHHCCceEEE
Confidence 3688888653 24456667777788998764
No 346
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=54.05 E-value=34 Score=26.62 Aligned_cols=107 Identities=11% Similarity=0.214 Sum_probs=61.9
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CC--CCcHHHHHHHHc---CCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SE--TLGLVVLEAMSS---GIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e--~~~~~ilEAma~---G~PvI~~ 421 (526)
.++.|+.+.+ ....+.......+..+...-+.++....+.. .|++|+-.. .+ .-|..+++.+.. .+|+|..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~ 86 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVM 86 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEE
Confidence 4566666543 3344555555544444433333444444333 467766443 23 345666666543 5777654
Q ss_pred -CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 -~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
..... .+.+ +.|..+++..+.+.+++.++|.+++..
T Consensus 87 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 87 ASSSDIPTAVRAM---RASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp ESSCCHHHHHHHH---HTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHH---HcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 33322 2233 567889999999999999999988753
No 347
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=54.04 E-value=42 Score=31.38 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++...++|+|++..+..........+...|+++++
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~ 96 (329)
T 3evn_A 58 KLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLV 96 (329)
T ss_dssp CHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 455666667899999988866655555555566776664
No 348
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=53.91 E-value=1.2e+02 Score=26.83 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=50.4
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHHH
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISE 199 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (526)
||+++... ....-.......+.+++.+.|+++.++......... ......+.
T Consensus 2 ~Ig~i~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~i~~ 53 (276)
T 3ksm_A 2 KLLLVLKG---DSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIA-------------------------GQIQILSY 53 (276)
T ss_dssp EEEEECSC---SSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHH-------------------------HHHHHHHH
T ss_pred eEEEEeCC---CCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHH-------------------------HHHHHHHH
Confidence 78888653 222234556677888888899999887543211100 00122333
Q ss_pred HHhcC-CCEEEECCCch-HHHHHHHHHHhcCCCEEEEEec
Q 009759 200 VARFK-PDIIHASSPGI-MVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 200 l~~~~-pDiV~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
+...+ +|.|++..... .....+......++|+|+.-..
T Consensus 54 l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~ 93 (276)
T 3ksm_A 54 HLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSD 93 (276)
T ss_dssp HHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecC
Confidence 33346 99999876321 1222333445679999875443
No 349
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=53.91 E-value=53 Score=28.04 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=40.3
Q ss_pred cCcEEEecCC-CCCCcHHHHHHHH-------cCCcEEEeCCCC-C----CceecccCCCceeEeeCCCCHHHHHHHHHHh
Q 009759 391 SGDVFVMPSE-SETLGLVVLEAMS-------SGIPVVGVRAGG-I----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 457 (526)
Q Consensus 391 ~aDv~v~ps~-~e~~~~~ilEAma-------~G~PvI~~~~gg-~----~e~v~~~~~~~~g~~~~~~d~~~la~ai~~l 457 (526)
..|++|+-.. .+.-|..+++.+. ..+|||...... . .+.+ +.|..+++..+-+ +|.++|.++
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~---~~Ga~~~l~KP~~--~L~~~i~~~ 193 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI---QAGMDAFLDKSLN--QLANVIREI 193 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH---HHTCSEEEETTCT--THHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH---hCCCCEEEcCcHH--HHHHHHHHH
Confidence 3688886544 2344666666664 457887543221 2 1223 4577889998877 899999988
Q ss_pred hhCHH
Q 009759 458 LYNQE 462 (526)
Q Consensus 458 l~d~~ 462 (526)
+....
T Consensus 194 l~~~~ 198 (206)
T 3mm4_A 194 ESKRH 198 (206)
T ss_dssp C----
T ss_pred HhhhH
Confidence 86543
No 350
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=53.87 E-value=31 Score=36.01 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=41.6
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCcc-------ccCceeccccccCCCccccccchhc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQE-------FYGAKLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (526)
|||+++... .....-.++|.+.||+|..+.++...... .......+++.+.....
T Consensus 1 ~ri~~~~s~----------~~~~~~l~~l~~~~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~-------- 62 (660)
T 1z7e_A 1 MKTVVFAYH----------DMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNV-------- 62 (660)
T ss_dssp CEEEEEECH----------HHHHHHHHHHHHTTCEEEEEECCCC--------CCHHHHHHHHTCCEECCSCT--------
T ss_pred CEEEEEEeC----------HHHHHHHHHHHhCCCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCC--------
Confidence 789888642 33344466677779999888776543210 00001112222211110
Q ss_pred ccHHHHHHHHhcCCCEEEECCC
Q 009759 192 LSPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~ 213 (526)
....+.+.+++.+||+|++-.+
T Consensus 63 ~~~~~~~~l~~~~~d~iv~~~~ 84 (660)
T 1z7e_A 63 NHPLWVERIAQLSPDVIFSFYY 84 (660)
T ss_dssp TSHHHHHHHHHHCCSEEEEESC
T ss_pred CcHHHHHHHHhcCCCEEEEcCc
Confidence 1135677888899999988664
No 351
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=53.86 E-value=42 Score=26.68 Aligned_cols=108 Identities=10% Similarity=0.124 Sum_probs=60.7
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCC-Ce-EEecccChhhHHHHHHc---CcEEEecCCC-CCCcHHHHHHHH---cCCcEE
Q 009759 350 EARIAFIGDGP-YREELEKMFTGM-PA-VFTGMLLGEELSQAYAS---GDVFVMPSES-ETLGLVVLEAMS---SGIPVV 419 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~-~V-~~~g~v~~~~l~~~~~~---aDv~v~ps~~-e~~~~~ilEAma---~G~PvI 419 (526)
..+++|+.+.+ ....+....... +. .+...-+.++....+.. .|++|+-... +.-|..+++.+. .++|+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 35666776543 334444444432 32 22223333666666655 5888875442 334566666654 367887
Q ss_pred EeCCCCC----CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 420 GVRAGGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 420 ~~~~gg~----~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
....... .+.+ ..|..+++..+.+.+++.++|..++..
T Consensus 83 ~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 83 LISGETDHELIRAAL---EAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EC-----CHHHHHHH---HTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHH---HccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 6432221 2233 567788999999999999999988763
No 352
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=53.76 E-value=65 Score=30.54 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=57.3
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCe----EEecccChhhHHHHHH--cCcEE
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA----VFTGMLLGEELSQAYA--SGDVF 395 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V----~~~g~v~~~~l~~~~~--~aDv~ 395 (526)
+...|+.+|-=. -| ..+++++...++++++.+.+. ..+..+.+.++.++ ... .++.++++ .+|++
T Consensus 5 ~~~~vgiiG~G~--ig-~~~~~~l~~~~~~~lv~v~d~-~~~~~~~~a~~~~~~~~~~~~-----~~~~~ll~~~~~D~V 75 (362)
T 1ydw_A 5 TQIRIGVMGCAD--IA-RKVSRAIHLAPNATISGVASR-SLEKAKAFATANNYPESTKIH-----GSYESLLEDPEIDAL 75 (362)
T ss_dssp -CEEEEEESCCT--TH-HHHHHHHHHCTTEEEEEEECS-SHHHHHHHHHHTTCCTTCEEE-----SSHHHHHHCTTCCEE
T ss_pred CceEEEEECchH--HH-HHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCCCCCeee-----CCHHHHhcCCCCCEE
Confidence 345677777411 12 245677777888887765543 33444555544332 221 35667776 48999
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+..+......-.+.+|+..|++|++-+
T Consensus 76 ~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 76 YVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred EEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 988765555556778999999999854
No 353
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=53.68 E-value=40 Score=26.53 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEE
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~ 158 (526)
...++.||+++.+. ......+.+.|.+.| ++|..+.
T Consensus 16 ~~~~~~~ilivdd~---------~~~~~~l~~~L~~~g~~~v~~~~ 52 (146)
T 4dad_A 16 YFQGMINILVASED---------ASRLAHLARLVGDAGRYRVTRTV 52 (146)
T ss_dssp CCGGGCEEEEECSC---------HHHHHHHHHHHHHHCSCEEEEEC
T ss_pred CcCCCCeEEEEeCC---------HHHHHHHHHHHhhCCCeEEEEeC
Confidence 35556899888653 245566778888888 8887653
No 354
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=53.59 E-value=25 Score=32.05 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=35.2
Q ss_pred CCCCCcEEEEEeccCC-----CCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSP-----FSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p-----~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..++.++++|.+..- .....|...-...|.+.|.++|++|.+..
T Consensus 27 m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~ 76 (272)
T 1m72_A 27 MNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP 76 (272)
T ss_dssp CCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 4555678877766542 34577889999999999999999998874
No 355
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=53.52 E-value=1.1e+02 Score=28.59 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=62.5
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC-----CCccccCceeccccccCCCccccccc----h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG-----VPQEFYGAKLIGSRSFPCPWYQKVPL----S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 189 (526)
+||++++..-+ ..|....+..+.+.....|++|.-+..+.. ...+.....+..+....-........ .
T Consensus 3 k~i~IltsGGd---apGmNaair~vv~~a~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~ 79 (320)
T 1pfk_A 3 KKIGVLTSGGD---APGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRD 79 (320)
T ss_dssp CEEEEEECSSC---CTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGS
T ss_pred CEEEEEccCCC---chhHHHHHHHHHHHHHHCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCC
Confidence 58999987633 358888899999998888987776653321 10111111111111111111111111 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
.....++.+.+++++.|.+++-.-....-.+..+.+ .++|+|-.--..
T Consensus 80 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~-~~i~vvgiPkTI 127 (320)
T 1pfk_A 80 ENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE-MGFPCIGLPGTI 127 (320)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH-TTCCEEEEEBCT
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHh-hCCCEEEEeccc
Confidence 123457778888999998877654333333333333 589988655443
No 356
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=53.47 E-value=37 Score=28.62 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=59.6
Q ss_pred CCcEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCC-cHHHHHHHH---cCCcEEEe-C
Q 009759 349 PEARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETL-GLVVLEAMS---SGIPVVGV-R 422 (526)
Q Consensus 349 ~~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~-~~~ilEAma---~G~PvI~~-~ 422 (526)
...+++|+.+.+ ....+.......+..+.+..+..+.. -...|++|+-....+. |. +.+.+. ..+|||.- .
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al--~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~ 87 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF--DVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVE 87 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC--SSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEEC
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC--CCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEc
Confidence 345677777544 23334444433233333322222211 1246888865443332 44 555554 45777754 3
Q ss_pred CCCCC---ceecccCCCceeEeeCCCCHHHHHHHHHHhhhCHHH
Q 009759 423 AGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 463 (526)
Q Consensus 423 ~gg~~---e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d~~~ 463 (526)
.+... +.+ +.|..+++..+.+.+++..+|..++.....
T Consensus 88 ~~~~~~~~~a~---~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 128 (196)
T 1qo0_D 88 YESPAVLSQII---ELECHGVITQPLDAHRVLPVLVSARRISEE 128 (196)
T ss_dssp CCSHHHHHHHH---HHTCSEEEESSCCGGGHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHH---HcCCCeeEecCcCHHHHHHHHHHHHHHHHH
Confidence 33221 223 457789999999999999999988764433
No 357
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=53.44 E-value=66 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=20.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEE
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMV 156 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~v 156 (526)
++||+++.+. ......+...|...|++|..
T Consensus 4 ~~~Ilivdd~---------~~~~~~l~~~L~~~g~~v~~ 33 (136)
T 2qzj_A 4 QTKILIIDGD---------KDNCQKLKGFLEEKGISIDL 33 (136)
T ss_dssp CCEEEEECSC---------HHHHHHHHHHHHTTTCEEEE
T ss_pred CCeEEEEcCC---------HHHHHHHHHHHHHCCCEEEE
Confidence 4789888653 24456677777778988764
No 358
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.37 E-value=1.4e+02 Score=27.57 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=91.3
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+...|+++.... ...-....+..+-+++.+.|+++.+........ ...
T Consensus 59 ~~~~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------------------~~~ 108 (339)
T 3h5o_A 59 SAKSRTVLVLIPSL---ANTVFLETLTGIETVLDAAGYQMLIGNSHYDAG---------------------------QEL 108 (339)
T ss_dssp ----CEEEEEESCS---TTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHH
T ss_pred cCCCCEEEEEeCCC---CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChH---------------------------HHH
Confidence 34456898887542 112335667788889999999998876543210 012
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecCCcccccccccccccchHHHHHHHHhhcCcEEEeCCh
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 274 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 274 (526)
.+.+.+...++|-|++....... .........++|+|+........ .+ .+....
T Consensus 109 ~~~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~------------------------~~-~V~~D~ 162 (339)
T 3h5o_A 109 QLLRAYLQHRPDGVLITGLSHAE-PFERILSQHALPVVYMMDLADDG------------------------RC-CVGFSQ 162 (339)
T ss_dssp HHHHHHHTTCCSEEEEECSCCCT-THHHHHHHTTCCEEEEESCCSSS------------------------CC-EEECCH
T ss_pred HHHHHHHcCCCCEEEEeCCCCCH-HHHHHHhcCCCCEEEEeecCCCC------------------------Ce-EEEECH
Confidence 34444556689988775432111 12223456789998763221100 11 111111
Q ss_pred -----hHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccHHHHHhhc-CCC-CCCcEEEEEecccccccHHHHHHHHHh
Q 009759 275 -----AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-NGE-PDKPLIVHVGRLGVEKSLDFLKRVMDR 347 (526)
Q Consensus 275 -----~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~vG~l~~~Kg~~~li~a~~~ 347 (526)
...+++.+.+. .++.++....+. .........+..+. .+. .....++..+......+.+.+.+.+..
T Consensus 163 ~~~~~~a~~~L~~~G~---~~I~~i~~~~~~---~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 236 (339)
T 3h5o_A 163 EDAGAAITRHLLSRGK---RRIGFLGAQLDE---RVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAE 236 (339)
T ss_dssp HHHHHHHHHHHHHTTC---CSEEEEEESCCH---HHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---CeEEEEeCCCCc---cHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcC
Confidence 12234444432 466666432110 00000111111111 111 122344555666777788888888887
Q ss_pred CCCcEEEEEeCCc
Q 009759 348 LPEARIAFIGDGP 360 (526)
Q Consensus 348 l~~~~l~ivG~g~ 360 (526)
.++...+++.+..
T Consensus 237 ~~~~~ai~~~nD~ 249 (339)
T 3h5o_A 237 RPDCDALFCCNDD 249 (339)
T ss_dssp CTTCCEEEESSHH
T ss_pred CCCCcEEEECChH
Confidence 7777778777543
No 359
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=53.35 E-value=16 Score=29.39 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
|||+++... ..|.....+..+++.|.+.|++|.++..
T Consensus 1 mki~iiy~S----~~Gnt~~~a~~i~~~l~~~g~~v~~~~~ 37 (147)
T 1f4p_A 1 PKALIVYGS----TTGNTEYTAETIARELADAGYEVDSRDA 37 (147)
T ss_dssp CEEEEEEEC----SSSHHHHHHHHHHHHHHHHTCEEEEEEG
T ss_pred CeEEEEEEC----CcCHHHHHHHHHHHHHHhcCCeeEEEeh
Confidence 788888542 2366667788888999989999988754
No 360
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=53.30 E-value=28 Score=34.33 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHCCCeEEEEEeCCCCCccc--cCceeccccccCCCccccccchhcccHHHHHHHHhcCCCEEEEC
Q 009759 139 RFQNFIKYLREMGDEVMVVTTHEGVPQEF--YGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHAS 211 (526)
Q Consensus 139 ~~~~l~~~L~~~G~~V~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiV~~~ 211 (526)
....++++++++|++|.++.......... .....+.+. +.+. .........+.+++++.++|+|+..
T Consensus 17 ~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~--~~~~----~~~~~d~~~l~~~~~~~~~d~i~p~ 85 (446)
T 3ouz_A 17 IALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIG--KARS----SESYLNIPAIIAAAEIAEADAIFPG 85 (446)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEE--CCTT----TTGGGCHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcC--CCCc----cccccCHHHHHHHHHHhCcCEEEEC
Confidence 56789999999999999987543211110 000111000 0000 0112233578888888899999864
No 361
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=53.19 E-value=87 Score=28.78 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=52.7
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+.+|+++.... ...-.......+-+++.+.|+++.++........ .....
T Consensus 3 ~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---------------------------~~~~i 52 (330)
T 3uug_A 3 KGSVGIAMPTK---SSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPN---------------------------QLSQI 52 (330)
T ss_dssp CCEEEEEECCS---SSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH---------------------------HHHHH
T ss_pred CcEEEEEeCCC---cchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHH---------------------------HHHHH
Confidence 45888887542 2223445667788888999999998864322100 01233
Q ss_pred HHHHhcCCCEEEECCCchH-HHHHHHHHHhcCCCEEEEEe
Q 009759 198 SEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~-~~~~~~~~~~~~~p~v~~~h 236 (526)
+.+...++|.|++...... ....+..+...++|+|+.-+
T Consensus 53 ~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 53 ENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECC
Confidence 3333458999988764322 22233445667999987544
No 362
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=53.11 E-value=69 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--eEEEE
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--EVMVV 157 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--~V~vi 157 (526)
.+.+||+++.+. ......+.+.|.+.|+ +|..+
T Consensus 4 ~~~~~iLivdd~---------~~~~~~l~~~L~~~g~~~~v~~~ 38 (149)
T 1k66_A 4 NATQPLLVVEDS---------DEDFSTFQRLLQREGVVNPIYRC 38 (149)
T ss_dssp CTTSCEEEECCC---------HHHHHHHHHHHHHTTBCSCEEEE
T ss_pred CCCccEEEEECC---------HHHHHHHHHHHHHcCCCceEEEE
Confidence 455789888653 2456678888888898 55543
No 363
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=53.06 E-value=1.2e+02 Score=26.77 Aligned_cols=83 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred CCCCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchh
Q 009759 111 INENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSL 190 (526)
Q Consensus 111 ~~~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (526)
.......++||+++.+. ......+...|.+.|++|.......
T Consensus 122 ~~~~~~~~~~ILivdd~---------~~~~~~l~~~L~~~g~~v~~a~~~~----------------------------- 163 (254)
T 2ayx_A 122 KAVSDNDDMMILVVDDH---------PINRRLLADQLGSLGYQCKTANDGV----------------------------- 163 (254)
T ss_dssp CCCCCCCCCEEEEEESS---------HHHHHHHHHHHHHHTSEEEEECCSH-----------------------------
T ss_pred ccccCCCCCEEEEEeCC---------HHHHHHHHHHHHHcCCEEEEECCHH-----------------------------
Q ss_pred cccHHHHHHHHhcCCCEEEE----CCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 191 ALSPRIISEVARFKPDIIHA----SSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~----~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
...+.+++..||+|++ .......+...+......+|+|+..
T Consensus 164 ----eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt 208 (254)
T 2ayx_A 164 ----DALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVT 208 (254)
T ss_dssp ----HHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEE
T ss_pred ----HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEE
No 364
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=53.03 E-value=15 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+||++.... +.+......+++.|++.|++|.++.+..
T Consensus 6 k~IllgvTG------s~aa~k~~~ll~~L~~~g~~V~vv~T~~ 42 (175)
T 3qjg_A 6 ENVLICLCG------SVNSINISHYIIELKSKFDEVNVIASTN 42 (175)
T ss_dssp CEEEEEECS------SGGGGGHHHHHHHHTTTCSEEEEEECTG
T ss_pred CEEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 688777652 2233457899999999999999998754
No 365
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=53.03 E-value=67 Score=23.76 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=58.3
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-CC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 423 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~-~~ 423 (526)
++.++.+.+ ..+.+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. ...|+|.- ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 455666543 2334444444334443333333555555543 4887765432 334566666654 35677643 32
Q ss_pred CCC-CceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 424 GGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 424 gg~-~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
... .+.. ..|..+++..+.+.+++..+|..++
T Consensus 83 ~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMS---SWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGG---GGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHH---hccccceEECCCCHHHHHHHHHHHh
Confidence 221 2233 4567789999999999999987764
No 366
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=53.02 E-value=11 Score=36.30 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=23.9
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
.|||+||.. +..-..+|..|++.|++|+|+=
T Consensus 1 sm~V~IVGa----------GpaGl~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 1 SMHVGIIGA----------GIGGTCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CCEEEEECC----------SHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECc----------CHHHHHHHHHHHhCCCCEEEEe
Confidence 389988832 2444678889999999999984
No 367
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=53.00 E-value=22 Score=30.71 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
..|||++|... | .|-....+..+++.+.+.|++|.++....
T Consensus 5 ~mmkilii~~S-~---~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 5 APVKLAIVFYS-S---TGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCCEEEEEECC-S---SSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCeEEEEEEC-C---CChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 34799998653 2 35566677888999999999999986543
No 368
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=52.89 E-value=34 Score=27.81 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=34.0
Q ss_pred CCCCCcEEEEEeccCC------CCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSP------FSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p------~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..+++.+++|.+..- ...+-|...-...|.+.|.++|++|.+..
T Consensus 11 m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~ 61 (146)
T 2dko_A 11 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKN 61 (146)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 4455567777765532 24467888889999999999999999875
No 369
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=52.89 E-value=75 Score=24.32 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=21.5
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--eEEEE
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--EVMVV 157 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--~V~vi 157 (526)
+|||+++.+. ......+.+.|.+.|+ +|..+
T Consensus 2 ~~~ilivdd~---------~~~~~~l~~~L~~~~~~~~v~~~ 34 (140)
T 1k68_A 2 HKKIFLVEDN---------KADIRLIQEALANSTVPHEVVTV 34 (140)
T ss_dssp CCEEEEECCC---------HHHHHHHHHHHHTCSSCCEEEEE
T ss_pred CCeEEEEeCC---------HHHHHHHHHHHHhcCCCceEEEE
Confidence 4799888653 2556778888888898 55443
No 370
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=52.86 E-value=55 Score=25.57 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=46.0
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+.+|++|... ...+ ..-..+.+.|.+.||+|.-+.+..+ ++.+...++.- ..
T Consensus 4 p~siAVVGaS---~~~~---~~g~~v~~~L~~~g~~V~pVnP~~~--------~i~G~~~y~sl--~d------------ 55 (122)
T 3ff4_A 4 MKKTLILGAT---PETN---RYAYLAAERLKSHGHEFIPVGRKKG--------EVLGKTIINER--PV------------ 55 (122)
T ss_dssp CCCEEEETCC---SCTT---SHHHHHHHHHHHHTCCEEEESSSCS--------EETTEECBCSC--CC------------
T ss_pred CCEEEEEccC---CCCC---CHHHHHHHHHHHCCCeEEEECCCCC--------cCCCeeccCCh--HH------------
Confidence 3578888542 1112 3445677888888998887765432 22233322211 00
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
+. . +|++.+..+.......+--+...|++.++
T Consensus 56 --lp-~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~ 87 (122)
T 3ff4_A 56 --IE-G-VDTVTLYINPQNQLSEYNYILSLKPKRVI 87 (122)
T ss_dssp --CT-T-CCEEEECSCHHHHGGGHHHHHHHCCSEEE
T ss_pred --CC-C-CCEEEEEeCHHHHHHHHHHHHhcCCCEEE
Confidence 11 2 78888877654443334444556777643
No 371
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=52.86 E-value=18 Score=28.15 Aligned_cols=43 Identities=5% Similarity=0.098 Sum_probs=30.5
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCC--CeEEEEEeCCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG--DEVMVVTTHEG 162 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~ 162 (526)
..||++|+..... + .........+|....++| ++|.++..+.+
T Consensus 6 ~~~K~~ivi~s~d-~--~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~ 50 (117)
T 2fb6_A 6 ANDKLTILWTTDN-K--DTVFNMLAMYALNSKNRGWWKHINIILWGAS 50 (117)
T ss_dssp TTSEEEEEECCCC-H--HHHHHTHHHHHHHHHHHTSCSEEEEEECSHH
T ss_pred cCCeEEEEEEcCC-h--HHHHHHHHHHHHHHHHcCCCCcEEEEEECCe
Confidence 3489999976422 1 122245888999999999 79999987653
No 372
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=52.83 E-value=1.1e+02 Score=27.93 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
+.++..+..+|+++...+.......+..+...+++.++.+-
T Consensus 56 l~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t 96 (288)
T 1oi7_A 56 VKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLIT 96 (288)
T ss_dssp HHHHHHHSCCSEEEECCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHhhcCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEEC
Confidence 33444456899999988876666666666778999555433
No 373
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=52.65 E-value=27 Score=33.24 Aligned_cols=91 Identities=18% Similarity=0.073 Sum_probs=56.9
Q ss_pred CcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCC-CeEEecccChhhHHHHHHcC--cEEEecC
Q 009759 323 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASG--DVFVMPS 399 (526)
Q Consensus 323 ~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~-~V~~~g~v~~~~l~~~~~~a--Dv~v~ps 399 (526)
+..|+.+|-=. -|...++.++...++++++-+-+ ...+..+.+.+.. .+.. .+++.++++.. |++++.+
T Consensus 5 ~~rigiIG~G~--~g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~~~~~~-----~~~~~~ll~~~~vD~V~i~t 76 (359)
T 3m2t_A 5 LIKVGLVGIGA--QMQENLLPSLLQMQDIRIVAACD-SDLERARRVHRFISDIPV-----LDNVPAMLNQVPLDAVVMAG 76 (359)
T ss_dssp CEEEEEECCSH--HHHHTHHHHHHTCTTEEEEEEEC-SSHHHHGGGGGTSCSCCE-----ESSHHHHHHHSCCSEEEECS
T ss_pred cceEEEECCCH--HHHHHHHHHHHhCCCcEEEEEEc-CCHHHHHHHHHhcCCCcc-----cCCHHHHhcCCCCCEEEEcC
Confidence 34677777421 12234667788888888875543 3345555655553 2222 24667777755 8988776
Q ss_pred CCCCCcHHHHHHHHcCCcEEEe
Q 009759 400 ESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 400 ~~e~~~~~ilEAma~G~PvI~~ 421 (526)
......-.+.+|+..|++|++-
T Consensus 77 p~~~H~~~~~~al~aGkhVl~E 98 (359)
T 3m2t_A 77 PPQLHFEMGLLAMSKGVNVFVE 98 (359)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEC
T ss_pred CcHHHHHHHHHHHHCCCeEEEE
Confidence 5444445677899999999874
No 374
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=52.44 E-value=20 Score=30.94 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=28.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~ 161 (526)
|||++-... +.+......+++.|.+. |++|.++.+..
T Consensus 1 ~~IllgvTG------siaa~k~~~ll~~L~~~~g~~V~vv~T~~ 38 (197)
T 1sbz_A 1 MKLIVGMTG------ATGAPLGVALLQALREMPNVETHLVMSKW 38 (197)
T ss_dssp CEEEEEECS------SSCHHHHHHHHHHHHTCTTCEEEEEECHH
T ss_pred CEEEEEEeC------hHHHHHHHHHHHHHHhccCCEEEEEECch
Confidence 688777652 22345689999999999 99999998643
No 375
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=52.36 E-value=61 Score=24.94 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=22.3
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
.++||+++.+. ......+.+.|.+.|++|..+
T Consensus 6 ~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~ 37 (136)
T 3hdv_A 6 ARPLVLVVDDN---------AVNREALILYLKSRGIDAVGA 37 (136)
T ss_dssp -CCEEEEECSC---------HHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCC---------HHHHHHHHHHHHHcCceEEEe
Confidence 45789888653 245567778888889988764
No 376
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=52.19 E-value=65 Score=29.95 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=23.6
Q ss_pred hcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 202 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 202 ~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
..++|+|++..+..........+-..|+++++
T Consensus 71 ~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~ 102 (318)
T 3oa2_A 71 ATALDYVSICSPNYLHYPHIAAGLRLGCDVIC 102 (318)
T ss_dssp TTSCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 56899999999877666655666667877664
No 377
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=52.04 E-value=98 Score=26.41 Aligned_cols=77 Identities=10% Similarity=-0.013 Sum_probs=44.3
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.|||+++.+. ......+...|...|++|..+... ....
T Consensus 2 ~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~---------------------------------~~a~ 39 (225)
T 1kgs_A 2 NVRVLVVEDE---------RDLADLITEALKKEMFTVDVCYDG---------------------------------EEGM 39 (225)
T ss_dssp CCEEEEECSS---------HHHHHHHHHHHHHTTCEEEEESSH---------------------------------HHHH
T ss_pred CceEEEEeCC---------HHHHHHHHHHHHHCCCEEEEECCH---------------------------------HHHH
Confidence 3789888653 245566777788889988643211 1344
Q ss_pred HHHHhcCCCEEEECC--CchHHHHH--HHHHHhcCCCEEEEEe
Q 009759 198 SEVARFKPDIIHASS--PGIMVFGA--LIIAKLLCVPIVMSYH 236 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~--~~~~~~~~--~~~~~~~~~p~v~~~h 236 (526)
..+.+..||+|++.. +...++.. .+......+|+|+...
T Consensus 40 ~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 40 YMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 556667899998854 22222222 2222234678776543
No 378
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=51.91 E-value=44 Score=29.98 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCcee---ccccccCCCc---cccccchhcccHHHHHHHHhcCCCEEEE
Q 009759 137 KNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKL---IGSRSFPCPW---YQKVPLSLALSPRIISEVARFKPDIIHA 210 (526)
Q Consensus 137 ~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~pDiV~~ 210 (526)
+.-+..|+++|.+.| +|+|+++..+....-..+.. +++....... ....+... ....+..++...+||+|+.
T Consensus 14 apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~~~~~v~GTPaDC-V~lal~~~l~~~~PDLVvS 91 (251)
T 2wqk_A 14 SPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADC-VHLGYRVILEEKKPDLVLS 91 (251)
T ss_dssp CHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHH-HHHHHHTTTTTCCCSEEEE
T ss_pred cHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCcCCCCCceeEEeeccceeecCCChHHH-HhhhhhhhcCCCCCCEEEe
Confidence 355788999999998 69999986543211111100 0111110000 01111111 0112334455668999988
Q ss_pred C---CC-------chHHHHHHHHHHhcCCCEEEEEe
Q 009759 211 S---SP-------GIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 211 ~---~~-------~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
. +. ......+.+-+...|+|-|-.-.
T Consensus 92 GIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 92 GINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp EEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 2 11 12235566677888999765443
No 379
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=51.89 E-value=72 Score=23.83 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=60.1
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH--cCCcEEEe-CCC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RAG 424 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma--~G~PvI~~-~~g 424 (526)
++.++.+.+ ....+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. .+.|+|.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 556666543 2344444444333333333334555555543 5888765442 334666677664 35676643 333
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.........+.|..+++..+.+.+++..+|..++.
T Consensus 84 ~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 84 DRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 22111111145778999999999999999987653
No 380
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=51.87 E-value=43 Score=30.01 Aligned_cols=35 Identities=6% Similarity=0.159 Sum_probs=24.7
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.|+++|+ ||.+..-..+++.|.+.|++|.++....
T Consensus 28 ~k~vlVT--------Gas~gIG~aia~~l~~~G~~V~~~~r~~ 62 (260)
T 3un1_A 28 QKVVVIT--------GASQGIGAGLVRAYRDRNYRVVATSRSI 62 (260)
T ss_dssp CCEEEES--------SCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEe--------CCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3566665 3333444678999999999999887654
No 381
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=51.84 E-value=48 Score=29.51 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=24.8
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|+++|+ ||.+..-..+++.|.+.|++|.++.....
T Consensus 8 k~~lVT--------Gas~gIG~aia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 8 RVFIVT--------GASSGLGAAVTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp CEEEEE--------STTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEe--------CCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 566665 33334456789999999999988876543
No 382
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=51.71 E-value=27 Score=32.01 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=35.4
Q ss_pred CCCCCCcEEEEEeccCC------CCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 113 ENNSRPRRIALFVEPSP------FSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p------~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
.+..+++++++|.+..- .+...|...-...|.+.|.++|++|.+..
T Consensus 15 ~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~ 66 (278)
T 3od5_A 15 KMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN 66 (278)
T ss_dssp CCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 35566677877755532 35677888999999999999999999874
No 383
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=51.62 E-value=52 Score=36.67 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=48.2
Q ss_pred CCCcEEEEEeccCCCCccCchH--HHHHHHHHHHHHCCCeEEEEEeCCCCCcc-ccCceeccccccCCCccccccchhcc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYK--NRFQNFIKYLREMGDEVMVVTTHEGVPQE-FYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..+|||+++... +....-|.+ .....++++|++.|++|.++..+...... +..... .......
T Consensus 557 ~~~~kVlVlG~G-~~riG~~~Efd~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~-------------~~~~p~~ 622 (1073)
T 1a9x_A 557 TDREKIMVLGGG-PNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDR-------------LYFEPVT 622 (1073)
T ss_dssp SSSCEEEEECCC-SCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSE-------------EECCCCS
T ss_pred ccCcEEEEecCC-ccccccccccchhHHHHHHHHHhcCCEEEEEecCCcccccccccccE-------------EEeccch
Confidence 356899888653 211112332 34567799999999999999765432110 000000 0000122
Q ss_pred cHHHHHHHHhcCCCEEEECCC
Q 009759 193 SPRIISEVARFKPDIIHASSP 213 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~ 213 (526)
...+..+++..++|.|+....
T Consensus 623 ~e~v~~i~~~e~~d~Vi~~~g 643 (1073)
T 1a9x_A 623 LEDVLEIVRIEKPKGVIVQYG 643 (1073)
T ss_dssp HHHHHHHHHHHCCSEEECSSS
T ss_pred hhhhhhhhhhcCcceEEeecC
Confidence 356777788889999987544
No 384
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=51.60 E-value=35 Score=33.30 Aligned_cols=89 Identities=12% Similarity=-0.013 Sum_probs=48.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHH-HCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLR-EMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~-~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
|||+++.. | .+...++..++ +.|+++.++.+.+...... ... +. ........+.
T Consensus 1 m~ililG~--------g--~r~~~~a~~~~~~~g~~~v~~~~~~~~~~~~--~~~-----~~--------~~~~d~~~l~ 55 (424)
T 2yw2_A 1 MKVLVVGN--------G--GREHAIAWKVAQSPLVKELYVAKGNAGIWEI--AKR-----VD--------ISPTDVEKLA 55 (424)
T ss_dssp CEEEEEES--------S--HHHHHHHHHHTTCTTCSEEEEEECCTTGGGT--SEE-----EC--------SCTTCHHHHH
T ss_pred CEEEEECC--------C--HHHHHHHHHHhhCCCCCEEEEECCCcchhhh--ccc-----cc--------CCcCCHHHHH
Confidence 78988853 2 23566777765 4689988887643221111 010 11 1122346778
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+++++.++|+|+..................++|++
T Consensus 56 ~~~~~~~~d~v~~~~E~~~~~~~~~~l~~~gi~~~ 90 (424)
T 2yw2_A 56 EFAKNEGVDFTIVGPEAPLVEGIVDEFEKRGLKIF 90 (424)
T ss_dssp HHHHHHTCSEEEECSHHHHHTTHHHHHHHTTCCEE
T ss_pred HHHHHcCCCEEEECCchHHHHHHHHHHHHCCCcEE
Confidence 88888999999975321110011122345677765
No 385
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=51.42 E-value=34 Score=28.56 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=34.2
Q ss_pred CCCCCcEEEEEeccCC------CCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSP------FSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p------~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..+++.+++|.+..- ...+.|...-...|.+.|.++|++|.+..
T Consensus 28 m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~ 78 (167)
T 1pyo_A 28 LQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLC 78 (167)
T ss_dssp CCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEee
Confidence 4555567777755542 24567899999999999999999998874
No 386
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=51.37 E-value=27 Score=28.59 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=59.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC--CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM--GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
...++|++.++. .--..+..+++.+.+. ||++.--........+..++.+..+. +.+. ...
T Consensus 9 p~~g~V~lsv~D-------~dK~~~v~~ak~~~~ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v~--------k~~e--GG~ 71 (152)
T 1b93_A 9 PARKHIALVAHD-------HCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAML--------SGPM--GGD 71 (152)
T ss_dssp CSSCEEEEEECG-------GGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHHHHCCCCEEEC--------CGGG--THH
T ss_pred CCCCEEEEEEeh-------hhHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHHHhCceeEEEE--------ecCC--CCC
Confidence 345789888763 3446789999999999 99665332111111111222221111 1111 023
Q ss_pred HHHHHHHHhcCCCEEEECCC----c---hHHHHHHHHHHhcCCCEEEEEe
Q 009759 194 PRIISEVARFKPDIIHASSP----G---IMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~----~---~~~~~~~~~~~~~~~p~v~~~h 236 (526)
..+...+++.+.|+|+.... . .........+-..++|++.+.-
T Consensus 72 p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~la 121 (152)
T 1b93_A 72 QQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVA 121 (152)
T ss_dssp HHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHH
T ss_pred chHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHH
Confidence 47889999999999988543 1 2234445566677899876443
No 387
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=51.18 E-value=1.4e+02 Score=27.45 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=47.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
+.+|+++....+....+-.......+-+.+.+.|+++.++..... .. . ....
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~~~--~~-------------------------~-~~~l 55 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTD--AE-------------------------Y-VPSL 55 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCSG--GG-------------------------H-HHHH
T ss_pred CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCCCH--HH-------------------------H-HHHH
Confidence 468999875111111122344456777788889999887654211 00 0 1223
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
+.+.+.++|.|++.................++|+|+.
T Consensus 56 ~~l~~~~~dgIi~~~~~~~~~~~~~a~~~p~~p~v~i 92 (318)
T 2fqx_A 56 SAFADENMGLVVACGSFLVEAVIETSARFPKQKFLVI 92 (318)
T ss_dssp HHHHHTTCSEEEEESTTTHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHcCCCEEEECChhHHHHHHHHHHHCCCCEEEEE
Confidence 3344458999998764332221122223348898864
No 388
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=51.03 E-value=30 Score=31.07 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCCCCcEEEEEeccCCC------CccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSPF------SYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~------~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..++.++++|.+..-| +...|...-...|.+.|.+.|++|++..
T Consensus 11 m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~ 61 (250)
T 2j32_A 11 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKN 61 (250)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45566788777665323 4567888889999999999999998874
No 389
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=51.01 E-value=49 Score=30.25 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCcEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~ 160 (526)
...|||++|... +..+|.... +..+++.+.+.|++|.++-..
T Consensus 56 ~~~mKILiI~GS---~R~~S~T~~La~~~~~~l~~~G~eveiidL~ 98 (279)
T 2fzv_A 56 APPVRILLLYGS---LRARSFSRLAVEEAARLLQFFGAETRIFDPS 98 (279)
T ss_dssp CSCCEEEEEESC---CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCT
T ss_pred CCCCEEEEEEeC---CCCCCHHHHHHHHHHHHHhhCCCEEEEEehh
Confidence 356899999764 334665544 556788888889999998653
No 390
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=50.95 E-value=5.2 Score=34.53 Aligned_cols=40 Identities=5% Similarity=0.070 Sum_probs=23.5
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEE-EEE
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVM-VVT 158 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~-vi~ 158 (526)
+++|||++|..+ +..++....+.+.+..+.+.|++|+ ++.
T Consensus 2 ~~~mkil~I~GS---~r~~s~t~~l~~~~~~~~~~g~~v~~~id 42 (193)
T 3svl_A 2 AEKLQVVTLLGS---LRKGSFNGMVARTLPKIAPASMEVNALPS 42 (193)
T ss_dssp --CEEEEEEECC---CSTTCHHHHHHHHGGGTSCTTEEEEECCC
T ss_pred CCCCEEEEEEcc---CCCCCHHHHHHHHHHHHccCCCEEEEEEe
Confidence 356999999764 4446655554444444444588887 543
No 391
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=50.89 E-value=30 Score=31.64 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=36.2
Q ss_pred CCCCCCcEEEEEeccCCC------CccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 113 ENNSRPRRIALFVEPSPF------SYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~------~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
.+..+++++++|.+..-| +..-|...-...|.+.|.++|++|.+...
T Consensus 38 ~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~d 90 (277)
T 4ehd_A 38 KMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKND 90 (277)
T ss_dssp CCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 356677888888654322 35678888899999999999999998743
No 392
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=50.84 E-value=74 Score=23.67 Aligned_cols=104 Identities=17% Similarity=0.279 Sum_probs=58.7
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecc-cChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-C
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGM-LLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 422 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~-v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~-~ 422 (526)
++.++.+.+ ....++......+....+. -+.++....+. ..|++++-... +.-|..+++.+. .+.|+|.. .
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSA 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEEC
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeC
Confidence 556666543 2334444444334443322 22344444443 35888765432 334556666653 46777654 3
Q ss_pred CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhh
Q 009759 423 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 458 (526)
Q Consensus 423 ~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll 458 (526)
.... .+.+ +.|..+++..+.+.+++.++|.+++
T Consensus 84 ~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 84 MGQQAMVIEAI---KAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp TTCHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHH---HhCcceeEeCCCCHHHHHHHHHHHh
Confidence 3322 2233 5677899999999999999997764
No 393
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=50.84 E-value=35 Score=32.19 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=59.4
Q ss_pred CCCCcEEEEEecccccccHHHHHHHHHhC-CCcEEEEEeCCccHHHHHHHhcCCCe-EEecccChhhHHHHHH--cCcEE
Q 009759 320 EPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVF 395 (526)
Q Consensus 320 ~~~~~~i~~vG~l~~~Kg~~~li~a~~~l-~~~~l~ivG~g~~~~~l~~l~~~~~V-~~~g~v~~~~l~~~~~--~aDv~ 395 (526)
..+...++.+|-=. ..-...+.++..+ ++++++-+-+ ...+..+++.++.++ .. .+++.++++ ..|++
T Consensus 15 ~~~~irvgiIG~G~--~~g~~~~~~l~~~~~~~~lvav~d-~~~~~~~~~a~~~~~~~~-----~~~~~~ll~~~~vD~V 86 (340)
T 1zh8_A 15 PLRKIRLGIVGCGI--AARELHLPALKNLSHLFEITAVTS-RTRSHAEEFAKMVGNPAV-----FDSYEELLESGLVDAV 86 (340)
T ss_dssp -CCCEEEEEECCSH--HHHHTHHHHHHTTTTTEEEEEEEC-SSHHHHHHHHHHHSSCEE-----ESCHHHHHHSSCCSEE
T ss_pred CCCceeEEEEecCH--HHHHHHHHHHHhCCCceEEEEEEc-CCHHHHHHHHHHhCCCcc-----cCCHHHHhcCCCCCEE
Confidence 45667788888520 1112356677777 7788866554 334445555544333 22 246667776 47999
Q ss_pred EecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 396 VMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 396 v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
++.+......-.+.+|+..|++|++-+
T Consensus 87 ~i~tp~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 87 DLTLPVELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred EEeCCchHHHHHHHHHHHCCCcEEEeC
Confidence 987765444556778999999998854
No 394
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=50.77 E-value=17 Score=33.18 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=24.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+|+++|+ ||.+..-..+++.|.+.|++|.++...
T Consensus 5 ~k~vlVT--------Gas~gIG~~~a~~l~~~G~~V~~~~r~ 38 (281)
T 3m1a_A 5 AKVWLVT--------GASSGFGRAIAEAAVAAGDTVIGTARR 38 (281)
T ss_dssp CCEEEET--------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEE--------CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4565665 344444567899999999999887654
No 395
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=50.74 E-value=21 Score=33.60 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++...++|+|++..+..........+...|+++++
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~ 96 (330)
T 3e9m_A 58 SYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLL 96 (330)
T ss_dssp SHHHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEE
T ss_pred CHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCCeEEE
Confidence 455667777899999998876655555555666777664
No 396
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=50.44 E-value=76 Score=24.61 Aligned_cols=30 Identities=7% Similarity=-0.109 Sum_probs=19.6
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCe
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDE 153 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~ 153 (526)
..+.+||+++.+. ......+...|.+.|+.
T Consensus 6 ~~~~~~iLivdd~---------~~~~~~l~~~l~~~~~~ 35 (146)
T 3ilh_A 6 TRKIDSVLLIDDD---------DIVNFLNTTIIRMTHRV 35 (146)
T ss_dssp -CCEEEEEEECSC---------HHHHHHHHHHHHTTCCE
T ss_pred cCccceEEEEeCC---------HHHHHHHHHHHHhcCCC
Confidence 3455789888653 24456677778888883
No 397
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=49.94 E-value=69 Score=29.83 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=61.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCc------cccCc-eeccccccCCCccccccchhc
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQ------EFYGA-KLIGSRSFPCPWYQKVPLSLA 191 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 191 (526)
|+|+++.++. .|-.....++++.+-++.+-+|++++.+..... ...+. +++.+. .+.+.. .....
T Consensus 2 m~~lv~~e~~----~g~l~~~~~eal~aA~~La~~V~av~~G~~~~~~~~~a~~a~GaDkv~~v~---d~~l~~-~~~~~ 73 (315)
T 1efv_A 2 QSTLVIAEHA----NDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQ---HDVYKG-LLPEE 73 (315)
T ss_dssp CEEEEECCEE----TTEECTHHHHHHHHHHTTTSEEEEEEEESCCHHHHHHHHHSTTCCEEEEEE---CGGGTT-CCHHH
T ss_pred ceEEEEEEcc----CCCcCHHHHHHHHHHHHhcCcEEEEEECCchHHHHHHHHHhcCCCEEEEec---Cchhcc-CCHHH
Confidence 6788887742 244445555555555555448888876654211 01121 111111 111111 11233
Q ss_pred ccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 192 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 192 ~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
+...+.+.+++.+||+|++.......-.+-.++.+++.+.+.++-.
T Consensus 74 ~a~~La~li~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~ 119 (315)
T 1efv_A 74 LTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIA 119 (315)
T ss_dssp HHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHHHTCCCEEEECE
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcchHHHHHHHHhCCCccccEEE
Confidence 4556777888889999999765433333555677889998877655
No 398
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=49.94 E-value=18 Score=33.80 Aligned_cols=38 Identities=18% Similarity=0.041 Sum_probs=25.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.+..|||++. ||.+..-..+++.|.+.||+|.++....
T Consensus 11 ~~~~~~vlVT---------GatG~iG~~l~~~L~~~g~~V~~~~r~~ 48 (335)
T 1rpn_A 11 GSMTRSALVT---------GITGQDGAYLAKLLLEKGYRVHGLVARR 48 (335)
T ss_dssp ----CEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred cccCCeEEEE---------CCCChHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4455788665 4444556678899999999999987654
No 399
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=49.89 E-value=81 Score=23.84 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=61.6
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCe-EEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHHc-----CCcEEE
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVG 420 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V-~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma~-----G~PvI~ 420 (526)
.++.++.+.+ ....+.......+. .+...-+.++....+.. .|++++-... +.-|..+++.+.. ..|+|.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 86 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFII 86 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 4566776553 23445555544333 22222233555555554 5888765432 3446677777753 567765
Q ss_pred eCCCCCC----ceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 421 VRAGGIP----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 421 ~~~gg~~----e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
....+.. +.+ +.|..+++..+.+.+++..+|..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 87 LTAQGDRALVQKAA---ALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CCSCCCHHHHHHHH---HHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 4322221 223 45777899999999999999987754
No 400
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=49.86 E-value=26 Score=33.27 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=50.4
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
.++|||++|.. |..+ ..+++.|.+. |+++..++.......... ....+ .+ ...
T Consensus 3 ~~~~~vgiiG~-------G~~g---~~~~~~l~~~~~~~lvav~d~~~~~~~~~-~~~~g-----~~----------~~~ 56 (354)
T 3db2_A 3 YNPVGVAAIGL-------GRWA---YVMADAYTKSEKLKLVTCYSRTEDKREKF-GKRYN-----CA----------GDA 56 (354)
T ss_dssp CCCEEEEEECC-------SHHH---HHHHHHHTTCSSEEEEEEECSSHHHHHHH-HHHHT-----CC----------CCS
T ss_pred CCcceEEEEcc-------CHHH---HHHHHHHHhCCCcEEEEEECCCHHHHHHH-HHHcC-----CC----------CcC
Confidence 45689999953 3322 4567778776 677665554321100000 00001 11 112
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+.++|+|++..+..........+...|+++++
T Consensus 57 ~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~ 95 (354)
T 3db2_A 57 TMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYV 95 (354)
T ss_dssp SHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEE
Confidence 455667667899999988765555444555556766654
No 401
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=49.61 E-value=10 Score=29.47 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=45.0
Q ss_pred CCCcEEEEEeCC-ccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 348 LPEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 348 l~~~~l~ivG~g-~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+.+..|+|.|.= ..++++++++...+-.+.+.|+ ...|++|.-...+..+.++-.|..+|+|||.-+
T Consensus 11 l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVs--------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 11 LSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTAN--------KASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCST--------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccc--------cCccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 345677777742 2567777777777777777775 345666644212335788999999999998544
No 402
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=49.56 E-value=40 Score=30.01 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=21.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||.+..-..+++.|.+.|++|.++.....
T Consensus 29 Gas~gIG~~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 29 GGSGALGAEVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 33344556799999999999988876543
No 403
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=49.52 E-value=61 Score=28.93 Aligned_cols=86 Identities=7% Similarity=0.039 Sum_probs=49.4
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+..+|+++.... ...-.......+.+++.+.|+++.++....... ....
T Consensus 6 ~~~~~Ig~i~~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~---------------------------~~~~ 55 (277)
T 3e61_A 6 RKSKLIGLLLPDM---SNPFFTLIARGVEDVALAHGYQVLIGNSDNDIK---------------------------KAQG 55 (277)
T ss_dssp ----CEEEEESCT---TSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHH---------------------------HHHH
T ss_pred CCCCEEEEEECCC---CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHH---------------------------HHHH
Confidence 3446788887531 222344556778888899999999876543210 0123
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHH-HHHhcCCCEEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVPIVMS 234 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~-~~~~~~~p~v~~ 234 (526)
+.+.+...++|.|++.... -..+. .....++|+|+.
T Consensus 56 ~~~~l~~~~~dgiIi~~~~---~~~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 56 YLATFVSHNCTGMISTAFN---ENIIENTLTDHHIPFVFI 92 (277)
T ss_dssp HHHHHHHTTCSEEEECGGG---HHHHHHHHHHC-CCEEEG
T ss_pred HHHHHHhCCCCEEEEecCC---hHHHHHHHHcCCCCEEEE
Confidence 4455556699998886522 11233 345669999864
No 404
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=48.91 E-value=31 Score=31.51 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=35.6
Q ss_pred CCCCCcEEEEEeccCCC------CccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSPF------SYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~------~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..+++.+++|.+..-| +...|...-...|.+.|.++|++|.+..
T Consensus 16 m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~ 66 (277)
T 1nw9_B 16 LSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKG 66 (277)
T ss_dssp CCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEc
Confidence 56666788888665433 4577889999999999999999998874
No 405
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=48.85 E-value=21 Score=33.80 Aligned_cols=39 Identities=21% Similarity=0.017 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+.++|+|++..+..........+...|+++++
T Consensus 56 ~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~ 94 (344)
T 3euw_A 56 SPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALC 94 (344)
T ss_dssp SHHHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEE
T ss_pred CHHHHhcCCCCCEEEEeCCchhhHHHHHHHHHcCCcEEE
Confidence 445666667899999998876665555555666777664
No 406
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=48.66 E-value=39 Score=28.53 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=34.1
Q ss_pred CCCCCcEEEEEeccC------CCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPS------PFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~------p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..+++.+++|.+.. ....+.|...-...|.+.|.++|++|.+..
T Consensus 39 m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~ 89 (179)
T 3p45_A 39 MDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN 89 (179)
T ss_dssp CCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 455556666665443 235678999999999999999999999875
No 407
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=48.45 E-value=37 Score=30.38 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=30.3
Q ss_pred cEEEEEeccCC--CC---ccCch-HHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSP--FS---YVSGY-KNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p--~~---~~gG~-~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
+|||++..... +. ...|. ..-+..-...|++.|++|+++++...
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~ 59 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT 59 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 58999966421 01 11243 45577888999999999999997643
No 408
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=48.35 E-value=32 Score=32.06 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEeccCC-----CCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSP-----FSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p-----~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..++.++++|.+..- .+...|...-...|.+.|.++|++|.+..
T Consensus 55 m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~ 104 (310)
T 2nn3_C 55 MNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFP 104 (310)
T ss_dssp CCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 4455567777765542 34577889999999999999999999875
No 409
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=48.29 E-value=75 Score=24.62 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=18.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMV 156 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~v 156 (526)
++|+++.+. + .....+...|...|++|..
T Consensus 5 ~~ILivdd~-~--------~~~~~l~~~L~~~g~~v~~ 33 (137)
T 3cfy_A 5 PRVLLVEDS-T--------SLAILYKQYVKDEPYDIFH 33 (137)
T ss_dssp CEEEEECSC-T--------THHHHHHHHTTTSSSEEEE
T ss_pred ceEEEEeCC-H--------HHHHHHHHHHHhcCceEEE
Confidence 478888653 2 2345566667777888754
No 410
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=48.16 E-value=94 Score=24.05 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=61.3
Q ss_pred CcEEEEEeCCc-cHHHHHHHhcCC-CeEEeccc-ChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHHc---CCcEE-
Q 009759 350 EARIAFIGDGP-YREELEKMFTGM-PAVFTGML-LGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS---GIPVV- 419 (526)
Q Consensus 350 ~~~l~ivG~g~-~~~~l~~l~~~~-~V~~~g~v-~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma~---G~PvI- 419 (526)
..+++|+.+.+ ....+....... ++...+.. +.++....+.. .|++|+-... +.-|..+++.+.. ..|||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 35667776543 233444444332 44433322 23455555443 5888875442 3456677777754 34454
Q ss_pred EeCCCC-CCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 420 GVRAGG-IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 420 ~~~~gg-~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
.+.... ..+.+ +.|..+++..+.+.+++..+|..++..
T Consensus 89 ~s~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 89 ITAWKEHAVEAF---ELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EESCCTTHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 333321 22233 567789999999999999999888753
No 411
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=48.15 E-value=61 Score=32.67 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=54.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
.+|++++.+ ......+++.|.+.|.+|..+................ ....+......+ ..-.-...+.
T Consensus 360 Gkrv~i~gd----------~~~~~~la~~L~ElGm~vv~v~~~~~~~~~~~~~~~l-l~~~~~~~~~~v-~~~~d~~~l~ 427 (519)
T 1qgu_B 360 GKKFGLYGD----------PDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKM-LDASPYGRDSEV-FINCDLWHFR 427 (519)
T ss_dssp TCEEEEESC----------HHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHH-HHHSTTCTTCEE-EESCCHHHHH
T ss_pred CCEEEEECC----------chHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHH-HHhcCCCCCCEE-EECCCHHHHH
Confidence 358877742 4788999999999999998777655322110000000 000000000000 0011234677
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhc-------CCCEEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLL-------CVPIVM 233 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~-------~~p~v~ 233 (526)
+.+++.+||+++.+... ..++++. ++|++-
T Consensus 428 ~~i~~~~pDLiig~~~~------~~~a~~~~~~g~~~gip~v~ 464 (519)
T 1qgu_B 428 SLMFTRQPDFMIGNSYG------KFIQRDTLAKGKAFEVPLIR 464 (519)
T ss_dssp HHHHHHCCSEEEECGGG------HHHHHHHHHHCGGGCCCEEE
T ss_pred HHHhhcCCCEEEECcch------HHHHHHhhcccccCCCCeEE
Confidence 88888899999998642 2233445 999863
No 412
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=48.11 E-value=57 Score=28.02 Aligned_cols=74 Identities=18% Similarity=0.043 Sum_probs=0.0
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
|||+++.+. ......+...|...|++|..+.... ....
T Consensus 1 m~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~~---------------------------------~al~ 38 (223)
T 2hqr_A 1 MRVLLIEKN---------SVLGGEIEKGLNVKGFMADVTESLE---------------------------------DGEY 38 (223)
T ss_dssp CCEEEECSC---------HHHHHHHHHHHGGGTCCEEEESSHH---------------------------------HHHH
T ss_pred CEEEEEcCC---------HHHHHHHHHHHHHCCcEEEEECCHH---------------------------------HHHH
Q ss_pred HHHhcCCCEEEECCCchHHHHHHHHHHhc-CCCEEEEE
Q 009759 199 EVARFKPDIIHASSPGIMVFGALIIAKLL-CVPIVMSY 235 (526)
Q Consensus 199 ~l~~~~pDiV~~~~~~~~~~~~~~~~~~~-~~p~v~~~ 235 (526)
.+.+..||+|+........+...+... . .+|+|+..
T Consensus 39 ~l~~~~~dlvilp~~~g~~~~~~lr~~-~~~~~ii~lt 75 (223)
T 2hqr_A 39 LMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVSS 75 (223)
T ss_dssp HHTTSCCSEEEECCTTHHHHHHHHHHH-CTTSEEEEEE
T ss_pred HHhcCCCCEEEeCCCCHHHHHHHHHhC-CCCCcEEEEE
No 413
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=48.11 E-value=82 Score=23.40 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=20.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
|||+++.+. ......+...|...|++|..+
T Consensus 1 ~~ilivdd~---------~~~~~~l~~~l~~~g~~v~~~ 30 (121)
T 2pl1_A 1 MRVLVVEDN---------ALLRHHLKVQIQDAGHQVDDA 30 (121)
T ss_dssp CEEEEECSC---------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEeCc---------HHHHHHHHHHHhhcCCEEEEe
Confidence 578877553 244566777788889987643
No 414
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=47.95 E-value=52 Score=30.76 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=61.8
Q ss_pred EEEEeccCCCCccCchHHHHHHHHHHHHHCC-CeEEEEEeCCCCC--cc---ccCc-eeccccccCCCccccccchhccc
Q 009759 121 IALFVEPSPFSYVSGYKNRFQNFIKYLREMG-DEVMVVTTHEGVP--QE---FYGA-KLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 121 Iliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~--~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
|+++.++.. .........+...++.|.+.| .+|++++.+.... .. ..+. +++.+. -+.+ . .....+.
T Consensus 3 ilv~~e~~~-g~l~~~~~eal~~A~~L~e~g~~~V~av~~G~~~~~~~~~a~a~GaDkv~~v~---d~~l-~-~~~~~~a 76 (320)
T 1o97_D 3 ILVIAEHRR-NDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVK---GSSI-D-FDPDVFE 76 (320)
T ss_dssp EEEECCEET-TEECTHHHHHHHHHHHHCSSTTCEEEEEEESTTGGGGHHHHCBTTCSEEEEEE---CSCS-S-CCHHHHH
T ss_pred EEEEEeCcC-CCcCHHHHHHHHHHHHHhhCCCCcEEEEEECCcHHHHHHHHHhcCCceEEEEe---Cccc-C-CCHHHHH
Confidence 566665422 222334555666677776546 5898888775421 00 1111 111111 1111 1 1223345
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
..+.+.+++.+||+|++.......-.+-.++.+++.+.+.++-.
T Consensus 77 ~~La~~i~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~ 120 (320)
T 1o97_D 77 ASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYI 120 (320)
T ss_dssp HHHHHHHHHHCCSEEEEECSHHHHTTHHHHHHTSSCEEEEEECE
T ss_pred HHHHHHHHhcCCCEEEEeCCCchhhHHHHHHHHhCCCccccEEE
Confidence 67778888889999999765433333455678899999887755
No 415
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=47.95 E-value=57 Score=25.38 Aligned_cols=34 Identities=6% Similarity=0.174 Sum_probs=21.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--eEEEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--EVMVV 157 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--~V~vi 157 (526)
+.+++||+++.+. ......+.+.|.+.|+ .|..+
T Consensus 4 m~~~~~ILivdd~---------~~~~~~l~~~L~~~g~~~~v~~~ 39 (143)
T 2qvg_A 4 AADKVDILYLEDD---------EVDIQSVERVFHKISSLIKIEIA 39 (143)
T ss_dssp ---CCSEEEECCC---------HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ccCCCeEEEEeCC---------HHHHHHHHHHHHHhCCCceEEEE
Confidence 3456799888653 2455677778888887 55544
No 416
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=47.68 E-value=86 Score=23.48 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=44.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIIS 198 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (526)
+||+++.+. ......+...|.+.|++|..+.. .....+
T Consensus 3 ~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~---------------------------------~~~al~ 40 (120)
T 3f6p_A 3 KKILVVDDE---------KPIADILEFNLRKEGYEVHCAHD---------------------------------GNEAVE 40 (120)
T ss_dssp CEEEEECSC---------HHHHHHHHHHHHHTTCEEEEESS---------------------------------HHHHHH
T ss_pred CeEEEEECC---------HHHHHHHHHHHHhCCEEEEEeCC---------------------------------HHHHHH
Confidence 488888653 14456677788889998865321 124455
Q ss_pred HHHhcCCCEEEECC--CchHHHHHH-HHHHhcCCCEEEEEe
Q 009759 199 EVARFKPDIIHASS--PGIMVFGAL-IIAKLLCVPIVMSYH 236 (526)
Q Consensus 199 ~l~~~~pDiV~~~~--~~~~~~~~~-~~~~~~~~p~v~~~h 236 (526)
.+++.+||+|++.. +...++..+ .+.....+|+++...
T Consensus 41 ~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 41 MVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEE
T ss_pred HHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEC
Confidence 66777999999854 333332222 122334677766544
No 417
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=47.61 E-value=58 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|.+..-..+++.|.+.|++|.++..+.
T Consensus 29 as~gIG~aia~~l~~~G~~V~~~~r~~ 55 (253)
T 2nm0_A 29 GNRGIGLAIARAFADAGDKVAITYRSG 55 (253)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 333445678999999999998887543
No 418
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=47.53 E-value=38 Score=32.05 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
||.+..-..+++.|.+.|++|.++...
T Consensus 8 GatG~iG~~l~~~L~~~g~~V~~~~r~ 34 (372)
T 1db3_A 8 GVTGQDGSYLAEFLLEKGYEVHGIKRR 34 (372)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 444455577889999999999988654
No 419
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=47.47 E-value=22 Score=32.81 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=25.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|||++. ||.+..-..+++.|.+.||+|.++....
T Consensus 1 m~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~~ 34 (312)
T 3ko8_A 1 MRIVVT---------GGAGFIGSHLVDKLVELGYEVVVVDNLS 34 (312)
T ss_dssp CEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred CEEEEE---------CCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence 677555 4444556678999999999999886543
No 420
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.40 E-value=52 Score=25.31 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=7.7
Q ss_pred HHHHHHHHcCCcEEE
Q 009759 406 LVVLEAMSSGIPVVG 420 (526)
Q Consensus 406 ~~ilEAma~G~PvI~ 420 (526)
.++-.|..+|+|||.
T Consensus 73 sKl~KA~~lgI~Iis 87 (112)
T 2ebu_A 73 SKSDKAAALGTKIID 87 (112)
T ss_dssp HHHHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCeEEe
Confidence 455555555555543
No 421
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=47.32 E-value=87 Score=23.46 Aligned_cols=29 Identities=7% Similarity=0.058 Sum_probs=19.4
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEE
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMV 156 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~v 156 (526)
+||+++.+. ......+...|...|++|..
T Consensus 4 ~~ilivdd~---------~~~~~~l~~~l~~~~~~v~~ 32 (124)
T 1srr_A 4 EKILIVDDQ---------SGIRILLNEVFNKEGYQTFQ 32 (124)
T ss_dssp CEEEEECSC---------HHHHHHHHHHHHTTTCEEEE
T ss_pred ceEEEEeCC---------HHHHHHHHHHHHHCCcEEEE
Confidence 588888653 24455667777778988763
No 422
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Probab=47.20 E-value=46 Score=31.32 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=22.2
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~ 160 (526)
|||++. ||.+..-..+++.|.+. |++|.++...
T Consensus 1 MkvlVT---------GasG~iG~~l~~~L~~~~g~~V~~~~r~ 34 (361)
T 1kew_A 1 MKILIT---------GGAGFIGSAVVRHIIKNTQDTVVNIDKL 34 (361)
T ss_dssp CEEEEE---------STTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred CEEEEE---------CCCchHhHHHHHHHHhcCCCeEEEEecC
Confidence 677554 33344455677888887 7999988654
No 423
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=47.19 E-value=20 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 137 KNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 137 ~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+..-..+++.|.+.|++|+++..+
T Consensus 12 G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 12 SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECC
Confidence 466788999999999999999764
No 424
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=47.16 E-value=1e+02 Score=24.19 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=43.2
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+.|||+++.+. ......+...|.+.|....+..... ..
T Consensus 17 ~~~m~~iLivdd~---------~~~~~~l~~~L~~~~~~~~v~~~~~-------------------------------~~ 56 (150)
T 4e7p_A 17 RGSHMKVLVAEDQ---------SMLRDAMCQLLTLQPDVESVLQAKN-------------------------------GQ 56 (150)
T ss_dssp ---CEEEEEECSC---------HHHHHHHHHHHHTSTTEEEEEEESS-------------------------------HH
T ss_pred CCCccEEEEEcCC---------HHHHHHHHHHHHhCCCcEEEEEECC-------------------------------HH
Confidence 4556899888653 2445667777777773333332211 12
Q ss_pred HHHHHHHhcCCCEEEECCC--chHHH--HHHHHHHhcCCCEEEEEe
Q 009759 195 RIISEVARFKPDIIHASSP--GIMVF--GALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~--~~~~~--~~~~~~~~~~~p~v~~~h 236 (526)
...+.+.+.+||+|++... ...++ ...+......+|+|+...
T Consensus 57 ~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 102 (150)
T 4e7p_A 57 EAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTT 102 (150)
T ss_dssp HHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred HHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeC
Confidence 4556667778999999642 22222 222222334667766443
No 425
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=47.13 E-value=1.5e+02 Score=26.22 Aligned_cols=110 Identities=9% Similarity=0.072 Sum_probs=62.5
Q ss_pred CcEEEEEeCCcc-HHHHHHHhcCCCeEEecccChhhHHHHHHc---CcEEEecCC-CCCCcHHHHHHHHc-----CCcEE
Q 009759 350 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMSS-----GIPVV 419 (526)
Q Consensus 350 ~~~l~ivG~g~~-~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~---aDv~v~ps~-~e~~~~~ilEAma~-----G~PvI 419 (526)
..++.++-+.+. ...+.......+..+...-+.++..+.+.. .|++++=.. .+.-|..+++.+.. .+|||
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii 203 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAII 203 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 456666665432 233333333334333333344555555543 367776433 23456667766642 46777
Q ss_pred E-eCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 420 G-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 420 ~-~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
+ |............+.|..+++..+.+.+++...|.++++
T Consensus 204 ~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 204 GISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp EEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 4 333322222111156889999999999999999988875
No 426
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=47.12 E-value=50 Score=31.38 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=57.3
Q ss_pred CCcEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCC-eEEecccChhhHHHHHHc--CcEEEec
Q 009759 322 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYAS--GDVFVMP 398 (526)
Q Consensus 322 ~~~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~-V~~~g~v~~~~l~~~~~~--aDv~v~p 398 (526)
++..|+.+|-= .-+...++.++.. ++++++-+-+. ..+..++..++.+ +.. ..++.++++. .|++++.
T Consensus 25 ~~irvgiiG~G--~~~~~~~~~~~~~-~~~~lvav~d~-~~~~a~~~a~~~~~~~~-----~~~~~~ll~~~~vD~V~I~ 95 (361)
T 3u3x_A 25 DELRFAAVGLN--HNHIYGQVNCLLR-AGARLAGFHEK-DDALAAEFSAVYADARR-----IATAEEILEDENIGLIVSA 95 (361)
T ss_dssp -CCEEEEECCC--STTHHHHHHHHHH-TTCEEEEEECS-CHHHHHHHHHHSSSCCE-----ESCHHHHHTCTTCCEEEEC
T ss_pred cCcEEEEECcC--HHHHHHHHHHhhc-CCcEEEEEEcC-CHHHHHHHHHHcCCCcc-----cCCHHHHhcCCCCCEEEEe
Confidence 45678888842 2244445555554 78888766653 3445555555443 221 2466777775 7999887
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 399 SESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 399 s~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
+....-.-.+.+|+.+|++|++-+
T Consensus 96 tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 96 AVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CChHHHHHHHHHHHHCCCeEEEeC
Confidence 654444456789999999999754
No 427
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=47.06 E-value=21 Score=36.03 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=27.6
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
.|||++. ||.+..-..+++.|.+.||+|.++.....
T Consensus 147 ~m~VLVT---------GatG~IG~~l~~~L~~~G~~V~~l~R~~~ 182 (516)
T 3oh8_A 147 PLTVAIT---------GSRGLVGRALTAQLQTGGHEVIQLVRKEP 182 (516)
T ss_dssp CCEEEEE---------STTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 6888766 44455567789999999999999986544
No 428
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.02 E-value=94 Score=23.74 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=61.5
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe-C
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 422 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~-~ 422 (526)
.++.|+.+.+ ....+.......+..+...-+.++....+. ..|++++-... +.-|..+++.+. ...|+|.. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTA 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 3566666543 233444444433333332333345544443 35888765432 334566666664 35677643 3
Q ss_pred CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 423 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 423 ~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
.+.........+.|..+++..+.+.+++..+|..++..
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 84 KDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp TTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 33222211111567889999999999999999888764
No 429
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=46.97 E-value=48 Score=28.49 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=61.3
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCC-CCCCcHHHHHHHH---cCCcEEEeC-CCC
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR-AGG 425 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~~-~gg 425 (526)
++.|+.+.+ ..+.+.......+ .+...-+.++....+...|++++-.. .+.-|..+++.+. ..+|+|.-. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 82 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSD 82 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCS
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 456666543 3344555555444 33333333444444456788886543 2334666666654 467876543 222
Q ss_pred CCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 426 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 426 ~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
........+.|..+++..+.+.+++.++|..++.
T Consensus 83 ~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 83 DESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp HHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 2111111145778999999999999999988764
No 430
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=46.82 E-value=84 Score=28.63 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC----eEEEEEeCCCCCccccCceeccccccCCCccccccchh
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD----EVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSL 190 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~----~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (526)
..+..+|.++... ...-....+..+-+.|.+.|| +|.++..+......
T Consensus 5 ~~~t~~IGvi~~~----~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~------------------------ 56 (302)
T 2qh8_A 5 MAKTAKVAVSQIV----EHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPA------------------------ 56 (302)
T ss_dssp --CCEEEEEEESS----CCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHH------------------------
T ss_pred ccCCcEEEEEEec----cChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHH------------------------
Confidence 4456789987321 112245667788899999999 66654332211110
Q ss_pred cccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 191 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 191 ~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
....+.+.+.+.++|.|++...... .. ......++|+|+...
T Consensus 57 -~~~~~~~~l~~~~vDgII~~~~~~~--~~-~~~~~~~iPvV~~~~ 98 (302)
T 2qh8_A 57 -IAVQIARQFVGENPDVLVGIATPTA--QA-LVSATKTIPIVFTAV 98 (302)
T ss_dssp -HHHHHHHHHHHTCCSEEEEESHHHH--HH-HHHHCSSSCEEEEEE
T ss_pred -HHHHHHHHHHhCCCCEEEECChHHH--HH-HHhcCCCcCEEEEec
Confidence 0123445556779999998753211 11 122357899988654
No 431
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=46.77 E-value=33 Score=30.86 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=32.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
..++||.++|+.. ...-|-......|+++|+++|+.|..+=
T Consensus 22 ~~~~m~~i~Itgt---~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 22 FQSHMTILVVTGT---GTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp CCSSCEEEEEEES---STTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCEEEEEeC---CCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3456898888764 3345777788999999999999999874
No 432
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=46.63 E-value=70 Score=29.67 Aligned_cols=135 Identities=15% Similarity=0.178 Sum_probs=81.8
Q ss_pred HHHHHHhhcCcEEEe--CChhHHHHHHHhcccCCCcEEEeecCCCCCCCCCCcccH---HHHHhhcCCCCCCcEEEEEec
Q 009759 257 LVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLIVHVGR 331 (526)
Q Consensus 257 ~~~~~~~~~ad~ii~--~S~~~~~~l~~~~~~~~~ki~vi~ngid~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~vG~ 331 (526)
-..+.+-+.+|.|+. ..+...+.+.++. .+-|| |+-|-+..+|...-. .+++.+ +.-+...|.|+|-
T Consensus 92 DTarvls~~~D~iviR~~~~~~~~~la~~~-----~vPVI-Nag~g~~~HPtQ~LaDl~Ti~e~~--g~l~gl~va~vGD 163 (308)
T 1ml4_A 92 DTIKTVEQYCDVIVIRHPKEGAARLAAEVA-----EVPVI-NAGDGSNQHPTQTLLDLYTIKKEF--GRIDGLKIGLLGD 163 (308)
T ss_dssp HHHHHHTTTCSEEEEEESSTTHHHHHHHTC-----SSCEE-EEEETTSCCHHHHHHHHHHHHHHS--SCSSSEEEEEESC
T ss_pred HHHHHHHHhCcEEEEecCChhHHHHHHHhC-----CCCEE-eCccCCccCcHHHHHHHHHHHHHh--CCCCCeEEEEeCC
Confidence 345556677898876 4455556665543 33344 566655566643221 223333 2335678999998
Q ss_pred ccccccHHHHHHHHHhCCCcEEEEEeCCcc--HHHHHHHhcCCC--eEEecccChhhHHHHHHcCcEEEecCCC-CCCc
Q 009759 332 LGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES-ETLG 405 (526)
Q Consensus 332 l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~--~~~l~~l~~~~~--V~~~g~v~~~~l~~~~~~aDv~v~ps~~-e~~~ 405 (526)
.....-..-++.++..+ ++++.++|...+ .+++.+.+++.+ +.+. +++.+.+..||++...... |.+|
T Consensus 164 ~~~~rva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~eav~~aDvvyt~~~q~er~~ 236 (308)
T 1ml4_A 164 LKYGRTVHSLAEALTFY-DVELYLISPELLRMPRHIVEELREKGMKVVET-----TTLEDVIGKLDVLYVTRIQKERFP 236 (308)
T ss_dssp TTTCHHHHHHHHHGGGS-CEEEEEECCGGGCCCHHHHHHHHHTTCCEEEE-----SCTHHHHTTCSEEEECCCCGGGSS
T ss_pred CCcCchHHHHHHHHHHC-CCEEEEECCccccCCHHHHHHHHHcCCeEEEE-----cCHHHHhcCCCEEEECCccccccC
Confidence 75555678888999888 899999995322 233433333333 3332 4667889999999876552 3454
No 433
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=46.56 E-value=16 Score=32.05 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=23.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
||+++|+ ||.+..-..+++.|.+.|++|.++..+
T Consensus 1 Mk~vlVT--------Gas~gIG~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVIT--------GASSGLGAELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEE--------STTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEe--------cCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 6766665 333444567899999999999888654
No 434
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=46.28 E-value=30 Score=33.06 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=25.6
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+.|+|++. ||.+..-..+++.|.+.||+|.++....
T Consensus 28 ~~~~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~~ 63 (379)
T 2c5a_A 28 ENLKISIT---------GAGGFIASHIARRLKHEGHYVIASDWKK 63 (379)
T ss_dssp SCCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCeEEEE---------CCccHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34677555 4444556678889999999999987654
No 435
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=46.06 E-value=23 Score=31.81 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCcEEEEEeccCCCCccCch--HHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGY--KNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~--~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
++|||+.|+. ..||. .....+|+..|+++|+.|.++-.+.
T Consensus 4 ~~~~vI~v~s-----~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 4 AKVRRIALAN-----QKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp -CCCEEEECC-----SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEEe-----CCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4578777754 22444 4567999999999999999997654
No 436
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=46.05 E-value=12 Score=34.75 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=23.4
Q ss_pred CCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-----C-CeEEEEEe
Q 009759 113 ENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-----G-DEVMVVTT 159 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-----G-~~V~vi~~ 159 (526)
.+..++|||+|+.. | ..-..++..|.+. | |+|+++..
T Consensus 3 ~m~~~~m~I~iiG~-------G---~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 3 AMNQQPIKIAVFGL-------G---GVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp ----CCEEEEEECC-------S---HHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCCCCEEEEECc-------C---HHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 34556699998842 2 2334567777777 9 99998854
No 437
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=45.84 E-value=44 Score=31.80 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++...++|+|++..+..........+...|+++++
T Consensus 56 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~ 94 (362)
T 3fhl_A 56 SFKELTEDPEIDLIVVNTPDNTHYEYAGMALEAGKNVVV 94 (362)
T ss_dssp CSHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEE
Confidence 345666666899999998876665555556667777665
No 438
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=45.63 E-value=39 Score=32.13 Aligned_cols=100 Identities=9% Similarity=-0.019 Sum_probs=0.0
Q ss_pred CcCCCCCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHH-H-CCCeEEEEEeCCCCCccccCceec-cccccCCCcccc
Q 009759 109 PEINENNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLR-E-MGDEVMVVTTHEGVPQEFYGAKLI-GSRSFPCPWYQK 185 (526)
Q Consensus 109 ~~~~~~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~-~-~G~~V~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 185 (526)
+.......++|||++| |.+......++.|. + .|.++..++..............- ....+.
T Consensus 14 ~~~~~~~m~~~rvgiI----------G~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~------ 77 (357)
T 3ec7_A 14 RENLYFQGMTLKAGIV----------GIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYN------ 77 (357)
T ss_dssp --------CCEEEEEE----------CCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEES------
T ss_pred ccccccCCCeeeEEEE----------CCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeC------
Q ss_pred ccchhcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 186 VPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 186 ~~~~~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++...++|+|++..+..........+...|+++++
T Consensus 78 ---------~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~ 116 (357)
T 3ec7_A 78 ---------DYHDLINDKDVEVVIITASNEAHADVAVAALNANKYVFC 116 (357)
T ss_dssp ---------SHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred ---------CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEe
No 439
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=45.59 E-value=1.7e+02 Score=26.43 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCc-cHHHHHHHhcCCCeEEec-ccChhhHHHHHHc--CcEEEecCC----CCCCc-HHHHHHHHcCCcEE
Q 009759 349 PEARIAFIGDGP-YREELEKMFTGMPAVFTG-MLLGEELSQAYAS--GDVFVMPSE----SETLG-LVVLEAMSSGIPVV 419 (526)
Q Consensus 349 ~~~~l~ivG~g~-~~~~l~~l~~~~~V~~~g-~v~~~~l~~~~~~--aDv~v~ps~----~e~~~-~~ilEAma~G~PvI 419 (526)
...++.++-+.+ ....+..+.+..+..+.+ .-+.++..+.+.. .|++|+=.. .+|+- ...+-... .+|||
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~-~~piI 237 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRM-DVPVI 237 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHT-TCCEE
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhcC-CCCEE
Confidence 345677777654 344555555555666663 3344566666654 488885322 23332 12333334 89998
Q ss_pred EeCCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 420 GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 420 ~~~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
+-..-. .+.....+.|.++++..|-+.++|..+|..++.
T Consensus 238 ~lT~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 238 FITAFP-ERLLTGERPEPTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp EEESCG-GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCH-HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 643221 122211256788899999999999999999875
No 440
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=45.56 E-value=1.7e+02 Score=26.23 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCEEEECCCchHHHHHHHHHHhcCCCEEEEEecC
Q 009759 204 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 238 (526)
Q Consensus 204 ~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 238 (526)
.||+|++.++..-. .++.-+...++|+|-.+...
T Consensus 158 ~Pdll~V~Dp~~e~-~Ai~EA~~l~IPvIaivDTn 191 (256)
T 2vqe_B 158 LPDAIFVVDPTKEA-IAVREARKLFIPVIALADTD 191 (256)
T ss_dssp CCSEEEESCTTTTH-HHHHHHHHTTCCCEECCCTT
T ss_pred CCCEEEEeCCccch-HHHHHHHHcCCCEEEEecCC
Confidence 79999999875433 35566788999998766543
No 441
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=45.53 E-value=61 Score=31.08 Aligned_cols=78 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhccc
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALS 193 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (526)
|...++||+++.+. ......+...|.+.|++|.......
T Consensus 1 M~~~~~~iLivdD~---------~~~~~~l~~~L~~~g~~v~~a~~~~-------------------------------- 39 (394)
T 3eq2_A 1 MHKVSATLLIIDDD---------EVVRESLAAYLEDSNFKVLQALNGL-------------------------------- 39 (394)
T ss_dssp ---CEEEEEEECSC---------HHHHHHHHHHHHHTTEEEEECSSHH--------------------------------
T ss_pred CCCCCCEEEEEeCC---------HHHHHHHHHHHHhCCCEEEEECCHH--------------------------------
Q ss_pred HHHHHHHHhcCCCEEEE----CCCchHHHHHHHHHHhcCCCEEE
Q 009759 194 PRIISEVARFKPDIIHA----SSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~----~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
...+.+.+.+||+|++ .......+...+......+|+|+
T Consensus 40 -~al~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 40 -QGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp -HHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred -HHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
No 442
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=45.45 E-value=49 Score=30.83 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=55.6
Q ss_pred EEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCe-EEecccChhhHHHHH-HcCcEEEecCCCC
Q 009759 325 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAY-ASGDVFVMPSESE 402 (526)
Q Consensus 325 ~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V-~~~g~v~~~~l~~~~-~~aDv~v~ps~~e 402 (526)
.|+.+|-=. -| ..++.++...++++++.+-+ ...+..+++.+..++ ... .++.+++ ..+|+++..+...
T Consensus 3 ~vgiiG~G~--~g-~~~~~~l~~~~~~~~~~v~d-~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~D~V~i~tp~~ 73 (325)
T 2ho3_A 3 KLGVIGTGA--IS-HHFIEAAHTSGEYQLVAIYS-RKLETAATFASRYQNIQLF-----DQLEVFFKSSFDLVYIASPNS 73 (325)
T ss_dssp EEEEECCSH--HH-HHHHHHHHHTTSEEEEEEEC-SSHHHHHHHGGGSSSCEEE-----SCHHHHHTSSCSEEEECSCGG
T ss_pred EEEEEeCCH--HH-HHHHHHHHhCCCeEEEEEEe-CCHHHHHHHHHHcCCCeEe-----CCHHHHhCCCCCEEEEeCChH
Confidence 456666311 11 34566777777887765544 334555566655443 221 3455666 6789999887655
Q ss_pred CCcHHHHHHHHcCCcEEEeC
Q 009759 403 TLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 403 ~~~~~ilEAma~G~PvI~~~ 422 (526)
...-.+.+|+..|++|++-.
T Consensus 74 ~h~~~~~~al~~gk~V~~EK 93 (325)
T 2ho3_A 74 LHFAQAKAALSAGKHVILEK 93 (325)
T ss_dssp GHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEec
Confidence 55566778999999999864
No 443
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=45.30 E-value=24 Score=31.68 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||||+--+. |=.+.-+..|+++|++.| +|.|+++..+
T Consensus 2 M~ILlTNDD------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~ 38 (251)
T 2phj_A 2 PTFLLVNDD------GYFSPGINALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp CEEEEECSS------CTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CEEEEECCC------CCCCHHHHHHHHHHHhcC-CEEEEecCCC
Confidence 899666442 223456889999999998 9999998754
No 444
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=45.30 E-value=36 Score=30.58 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=24.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.++|+ ||.+..-..+++.|.+.|++|.++....
T Consensus 3 ~k~vlVT--------Gasg~IG~~la~~L~~~G~~V~~~~r~~ 37 (267)
T 3rft_A 3 MKRLLVT--------GAAGQLGRVMRERLAPMAEILRLADLSP 37 (267)
T ss_dssp EEEEEEE--------STTSHHHHHHHHHTGGGEEEEEEEESSC
T ss_pred CCEEEEE--------CCCCHHHHHHHHHHHhcCCEEEEEecCC
Confidence 5655665 3333344568899999999999887654
No 445
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=45.25 E-value=20 Score=33.13 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=26.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.|||++. ||.+..-..+++.|.+.||+|.++....
T Consensus 7 ~~~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~~ 41 (321)
T 3vps_A 7 KHRILIT---------GGAGFIGGHLARALVASGEEVTVLDDLR 41 (321)
T ss_dssp CCEEEEE---------TTTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred CCeEEEE---------CCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence 4677665 4445566778999999999999987644
No 446
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=45.21 E-value=1e+02 Score=23.58 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=60.8
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCC-CeEEeccc-ChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe
Q 009759 351 ARIAFIGDGP-YREELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV 421 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~-~V~~~g~v-~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~ 421 (526)
.+++++.+.+ ....+....... ++...... +.++..+.+. ..|++++-... +.-|..+++.+. ...|+|.-
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~l 83 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIV 83 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEE
Confidence 3556666543 233444444322 23332322 2345555444 36888875443 334566666664 35777654
Q ss_pred -CCCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 422 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 422 -~~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
..... .+.+ +.|..+++..+.+.+++.++|..++..
T Consensus 84 s~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 84 TTFKRPGYFEKAV---VNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp ESCCCHHHHHHHH---HTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred ecCCCHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 33322 2233 567889999999999999999888754
No 447
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=45.20 E-value=1.2e+02 Score=27.14 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=48.3
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+..+|+++.... ...-.......+.+++.+.|+++.++....... ....
T Consensus 6 ~~~~~Igvi~~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~---------------------------~~~~ 55 (285)
T 3c3k_A 6 AKTGMLLVMVSNI---ANPFCAAVVKGIEKTAEKNGYRILLCNTESDLA---------------------------RSRS 55 (285)
T ss_dssp -CCCEEEEEESCT---TSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------------------HHHH
T ss_pred CCCCEEEEEeCCC---CCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHH---------------------------HHHH
Confidence 4456899987531 112233456677788888999998775432100 0012
Q ss_pred HHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 196 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 196 l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
..+.+...++|.|++....... ..+.... .++|+|+.
T Consensus 56 ~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~-~~iPvV~~ 92 (285)
T 3c3k_A 56 CLTLLSGKMVDGVITMDALSEL-PELQNII-GAFPWVQC 92 (285)
T ss_dssp HTHHHHTTCCSEEEECCCGGGH-HHHHHHH-TTSSEEEE
T ss_pred HHHHHHhCCCCEEEEeCCCCCh-HHHHHHh-cCCCEEEE
Confidence 3334445689988886532211 1122234 78998875
No 448
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=45.14 E-value=67 Score=29.09 Aligned_cols=95 Identities=9% Similarity=0.004 Sum_probs=53.3
Q ss_pred CCCCcEEEEEeccCC--CCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcc
Q 009759 115 NSRPRRIALFVEPSP--FSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLAL 192 (526)
Q Consensus 115 ~~~~mkIliv~~~~p--~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (526)
..+..+|+++..... .....-....+..+.+++.+.|+++.++...... ..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~---------------------------~~ 56 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMN---------------------------DL 56 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHH---------------------------HH
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCCh---------------------------HH
Confidence 344568988873211 0111123455677888888899999876432210 01
Q ss_pred cHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 193 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 193 ~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
...+.+.+...++|-|++....... .........++|+|+.-..
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~ 100 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKEND-PIKQMLIDESMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTC-HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHhCCcCEEEEcCcccCh-HHHHHHHhCCCCEEEECCC
Confidence 1245556666799988886532211 1222345679999875443
No 449
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=45.12 E-value=20 Score=33.65 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=53.6
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 401 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~ 401 (526)
..++++|.=.- | ..+++++...++++++-+.+.. .+..+++.++.++. ....++.+++. ..|++++.+..
T Consensus 6 ~rigiiG~G~i--g-~~~~~~l~~~~~~~~~av~d~~-~~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKV--A-PRFIEGVRLAGNGEVVAVSSRT-LESAQAFANKYHLP----KAYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTT--H-HHHHHHHHHHCSEEEEEEECSC-SSTTCC---CCCCS----CEESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHH--H-HHHHHHHHhCCCcEEEEEEcCC-HHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCc
Confidence 45777774211 2 2456677777788777555322 22223333333331 01246777787 78999887765
Q ss_pred CCCcHHHHHHHHcCCcEEEeC
Q 009759 402 ETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~ 422 (526)
....-.+.+|+..|++|++-+
T Consensus 78 ~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 78 QDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp GGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEcc
Confidence 544556788999999999764
No 450
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=45.07 E-value=67 Score=34.16 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=27.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
||||+|-+.. ....+-.+.....|..+|.+.||+|.....
T Consensus 1 m~ILiVdDd~-~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~ 40 (755)
T 2vyc_A 1 MKVLIVESEF-LHQDTWVGNAVERLADALSQQNVTVIKSTS 40 (755)
T ss_dssp CEEEEECCTT-STTSHHHHHHHHHHHHHHHHTTCEEEEESS
T ss_pred CeEEEEeCCc-cccccccHHHHHHHHHHHHhCCCEEEEECC
Confidence 7999997642 011223345578888999999999987643
No 451
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=45.02 E-value=1.5e+02 Score=25.41 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=63.3
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH---cCCcEEEe-C
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-R 422 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~-~ 422 (526)
.++.|+.+.+ ..+.+.......+..+...-+.++....+.. .|++|+-.. .+.-|..+++.+. .++|||.. .
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 4666666543 2334444444334443333333555555443 588876543 2345666776664 46787754 3
Q ss_pred CCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 423 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 423 ~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
...........+.|..+++..+.+.+++..+|..++.
T Consensus 88 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 88 RSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2222222211167888999999999999999988764
No 452
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=45.02 E-value=18 Score=32.78 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=19.4
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEE
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVV 157 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi 157 (526)
....|+|+++++.. -......++-..|. .||+|.++
T Consensus 27 ~~~~m~ill~~~~~------~~~~l~q~l~~~l~-~~h~V~~~ 62 (260)
T 1zgh_A 27 KAGLMNIIIATTKS------WNIKNAQKFKKENE-SKYNTTII 62 (260)
T ss_dssp ---CEEEEEECCSH------HHHHHHHHHHHHTT-TTEEEEEE
T ss_pred ccCceEEEEECChH------HHHHHHHHHHHHhc-ccCceEEE
Confidence 55669998886521 11122333444455 68999887
No 453
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=45.00 E-value=73 Score=28.64 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 134 SGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 134 gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||.+..-..+++.|.+.|++|.++..+.
T Consensus 21 Gas~GIG~aia~~l~~~G~~V~~~~r~~ 48 (269)
T 3vtz_A 21 GGSSGIGLAVVDALVRYGAKVVSVSLDE 48 (269)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3334445678999999999999887543
No 454
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=44.99 E-value=34 Score=32.25 Aligned_cols=82 Identities=6% Similarity=-0.074 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEeccc-------------ChhhHHHHHHcCcEEEecCCCCCCcH
Q 009759 340 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGML-------------LGEELSQAYASGDVFVMPSESETLGL 406 (526)
Q Consensus 340 ~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v-------------~~~~l~~~~~~aDv~v~ps~~e~~~~ 406 (526)
.+++++...++++++.+.+.. .+....+.+..++..+|.. -..+..+++..+|+++..+-.....-
T Consensus 16 ~~~r~l~~~~~~elvav~d~~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~~h~~ 94 (334)
T 2czc_A 16 RVAYAVTKQDDMELIGITKTK-PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAK 94 (334)
T ss_dssp HHHHHHHTCTTEEEEEEEESS-CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTTHHHH
T ss_pred HHHHHHhcCCCCEEEEEEcCC-HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCccccHH
Confidence 577777778888887776432 2233333333333333321 11355666778999987764332122
Q ss_pred HHHHHHHcCCcEEEeC
Q 009759 407 VVLEAMSSGIPVVGVR 422 (526)
Q Consensus 407 ~ilEAma~G~PvI~~~ 422 (526)
....++..|++||.+.
T Consensus 95 ~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 95 NKPLYEKAGVKAIFQG 110 (334)
T ss_dssp HHHHHHHHTCEEEECT
T ss_pred HHHHHHHcCCceEeec
Confidence 3447888999999763
No 455
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=44.88 E-value=34 Score=33.33 Aligned_cols=89 Identities=7% Similarity=-0.044 Sum_probs=48.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHHH
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRII 197 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (526)
|||+++.. | .+...++..|++ .|+++.++.+.+...... .. .+. ........+.
T Consensus 1 m~ililG~--------g--~r~~~~a~~~~~~~g~~~v~~~~~~~~~~~~--~~-----~~~--------~~~~d~~~l~ 55 (422)
T 2xcl_A 1 MNVLIIGK--------G--GREHTLAWKAAQSSLVENVFAAPGNDGMAAS--AQ-----LVN--------IEESDHAGLV 55 (422)
T ss_dssp CEEEEEEC--------S--HHHHHHHHHHTTCTTCSEEEEEECCGGGTTT--CE-----ECC--------CCTTCHHHHH
T ss_pred CEEEEECC--------C--HHHHHHHHHHHhCCCCCEEEEeCCChhhhhh--cc-----ccc--------cCcCCHHHHH
Confidence 78988843 2 245677777755 589988887643211100 01 011 1122345788
Q ss_pred HHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEE
Q 009759 198 SEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 232 (526)
Q Consensus 198 ~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v 232 (526)
+++++.++|+|+..................++|++
T Consensus 56 ~~~~~~~~d~v~~~~E~~~~~~~~~~l~~~gi~~~ 90 (422)
T 2xcl_A 56 SFAKQNQVGLTIVGPEVPLIEGLVDEFEKAGLHVF 90 (422)
T ss_dssp HHHHHTTEEEEEECSHHHHHTTHHHHHHHTTCCEE
T ss_pred HHHHHcCCCEEEECCcHHHHHHHHHHHHHCCCCEE
Confidence 88888899999985322110111122335677764
No 456
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=44.86 E-value=1.1e+02 Score=23.80 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=57.7
Q ss_pred EEEEEeCCcc-HHHHHHHhcC--CCeEEec-ccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH---cCCcEEEe
Q 009759 352 RIAFIGDGPY-REELEKMFTG--MPAVFTG-MLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV 421 (526)
Q Consensus 352 ~l~ivG~g~~-~~~l~~l~~~--~~V~~~g-~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma---~G~PvI~~ 421 (526)
++.|+.+.+. .+.+...... .++...+ .-+.++....+.. .|++|+-... +.-|..+++.+. .+.|+|..
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~l 83 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM 83 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 5666665432 3344444431 2333332 2223455555543 5888865432 334666666654 46777654
Q ss_pred C-CCC---CCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 422 R-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 422 ~-~gg---~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
. ... ..+.+ +.|..+++..+.+.+++.++|..++.
T Consensus 84 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 84 SGYSDKEYLKAAI---KFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CCSTTTCCC---------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHH---hCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3 222 23334 56788999999999999999988764
No 457
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=44.83 E-value=93 Score=29.57 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=24.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
+||+++.. | .....+++++.+.|++|.++.+...
T Consensus 2 ~~Ililg~--------g--~~g~~~~~a~~~~G~~v~~~~~~~~ 35 (380)
T 3ax6_A 2 KKIGIIGG--------G--QLGKMMTLEAKKMGFYVIVLDPTPR 35 (380)
T ss_dssp CEEEEECC--------S--HHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CEEEEECC--------C--HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 37877742 2 2356788899999999999887543
No 458
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=44.82 E-value=1.4e+02 Score=25.28 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=62.0
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCC-CCCCcHHHHHHHH---cCCcEEEeC-
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR- 422 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~-~e~~~~~ilEAma---~G~PvI~~~- 422 (526)
.++.|+.+.+ ....+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|||.-.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 3566666543 2334444444334333333333555554443 588876543 2344666666664 367877543
Q ss_pred CCCC---CceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 423 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 423 ~gg~---~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.... .+.+ +.|..+++..+.+.+++..+|..++.
T Consensus 83 ~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 83 LSDVEYRVKGL---NMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp SCHHHHHHHTC---CCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 3221 2233 66788999999999999999988764
No 459
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=44.80 E-value=51 Score=27.38 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=33.7
Q ss_pred CCCCCcEEEEEeccC-------------CCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPS-------------PFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~-------------p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..+++.+++|.+.. ....+.|...-...|.+.|.++|++|.+..
T Consensus 18 m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~ 75 (164)
T 1qtn_A 18 MKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 75 (164)
T ss_dssp CCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEec
Confidence 344455676665543 134677889999999999999999998874
No 460
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=44.74 E-value=1.6e+02 Score=31.16 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCC-----ccccCceeccccccCCCccccccc-h
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVP-----QEFYGAKLIGSRSFPCPWYQKVPL-S 189 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (526)
.++|||++++..-| ..|....++.+++.....|++|.-+..+.... .+.....+..+....-........ .
T Consensus 398 ~~~~~IgIltsGGd---apGmNaaIravv~~~~~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~ 474 (762)
T 3o8l_A 398 SGSYTVAVMNVGAP---AAGMNAAVRSTVRIGLIQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLP 474 (762)
T ss_dssp SSCCEEEEEEESSC---CTTHHHHHHHHHHHHHHHTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEECCCS
T ss_pred ccCCEEEEEecCCC---cHHHHHHHHHHHHHHHHCCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCCCCc
Confidence 45699999987633 35888888999998888899888776543210 000000011110000000000000 0
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHH------hcCCCEEEEEec
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAK------LLCVPIVMSYHT 237 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~------~~~~p~v~~~h~ 237 (526)
......+.+.+++++.|.+++-.-....-.+..+.. ..++|+|..--.
T Consensus 475 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkT 528 (762)
T 3o8l_A 475 KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPAT 528 (762)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccc
Confidence 234567888899999997666543222222222222 247888765444
No 461
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=44.70 E-value=29 Score=28.26 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
..|+|+++. .+..-..+++.|.+.|++|.++..+.
T Consensus 18 ~~~~v~IiG----------~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFG----------CGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEEC----------CSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCcEEEEC----------CCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 347888773 23455678889999999999987654
No 462
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=44.54 E-value=21 Score=32.26 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCCCCCcEEEEEeccCCC-----CccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 113 ENNSRPRRIALFVEPSPF-----SYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 113 ~~~~~~mkIliv~~~~p~-----~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
.+..+++++++|.+..-| +...|...-...|.+.|.++|++|++...
T Consensus 14 ~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~d 65 (259)
T 3sir_A 14 NMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKD 65 (259)
T ss_dssp CCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeC
Confidence 356667788877665432 34557778889999999999999998753
No 463
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=44.54 E-value=56 Score=31.50 Aligned_cols=96 Identities=9% Similarity=-0.098 Sum_probs=56.2
Q ss_pred CCcEEEEEecccc-cccHHHHHHHHHhCCCcEEEE-EeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHc-------C
Q 009759 322 DKPLIVHVGRLGV-EKSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------G 392 (526)
Q Consensus 322 ~~~~i~~vG~l~~-~Kg~~~li~a~~~l~~~~l~i-vG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~-------a 392 (526)
++..|+.+|-=.. .-| ...+.++...++++++- +-+ ...+..++..++.++.-. .-..++.++++. .
T Consensus 11 ~~~rvgiiG~G~~~~ig-~~h~~~~~~~~~~~lva~v~d-~~~~~a~~~a~~~g~~~~--~~~~~~~~ll~~~~~~~~~v 86 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIG-YIHRCAALRDNTFVLVAGAFD-IDPIRGSAFGEQLGVDSE--RCYADYLSMFEQEARRADGI 86 (398)
T ss_dssp SCEEEEEEECCTTCSSH-HHHHHHHHGGGSEEEEEEECC-SSHHHHHHHHHHTTCCGG--GBCSSHHHHHHHHTTCTTCC
T ss_pred CcceEEEEcCCccchhH-HHHHHHHhhCCCeEEEEEEeC-CCHHHHHHHHHHhCCCcc--eeeCCHHHHHhcccccCCCC
Confidence 4567888874220 011 13344556666777764 332 344555555555443100 112456666765 8
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCcEEEe
Q 009759 393 DVFVMPSESETLGLVVLEAMSSGIPVVGV 421 (526)
Q Consensus 393 Dv~v~ps~~e~~~~~ilEAma~G~PvI~~ 421 (526)
|++++.+......-.+.+|+.+|++|++-
T Consensus 87 D~V~i~tp~~~H~~~~~~al~aGkhVl~E 115 (398)
T 3dty_A 87 QAVSIATPNGTHYSITKAALEAGLHVVCE 115 (398)
T ss_dssp SEEEEESCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CEEEECCCcHHHHHHHHHHHHCCCeEEEe
Confidence 99988776555556688999999999974
No 464
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=44.51 E-value=34 Score=31.14 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=28.1
Q ss_pred cEEEEEeccCCCCccCchHHH-HHHHHHHHHHCCCeEEEEEeCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNR-FQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~-~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
||||+|..+ | ..+|.... +..+++.|.+.|++|.++....
T Consensus 3 mkiLiI~gS-p--r~~s~t~~la~~~~~~l~~~g~eV~~~dL~~ 43 (273)
T 1d4a_A 3 RRALIVLAH-S--ERTSFNYAMKEAAAAALKKKGWEVVESDLYA 43 (273)
T ss_dssp CEEEEEECC-S--CTTSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CEEEEEEeC-C--CCccHHHHHHHHHHHHHHhCCCeEEEEEccc
Confidence 799998764 3 33554444 4566777888999999987543
No 465
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=44.41 E-value=34 Score=29.04 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=28.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|||++|... + .|.....+..+++.+.+.|++|.++...
T Consensus 6 ~kilii~~S-~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 6 PYILVLYYS-R---HGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp CEEEEEECC-S---SSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred ceEEEEEeC-C---CChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 599888763 2 3556667788889999999999988643
No 466
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=44.35 E-value=1.2e+02 Score=28.30 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=50.5
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
..+...|+++.... ...-....+..+.+++.+.|+++.+......... ..
T Consensus 67 ~~~~~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---------------------------~~ 116 (355)
T 3e3m_A 67 TKRSGFVGLLLPSL---NNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPER---------------------------EE 116 (355)
T ss_dssp ----CEEEEEESCS---BCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH---------------------------HH
T ss_pred cCCCCEEEEEeCCC---CchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHH---------------------------HH
Confidence 34456898887532 1123445677888889999999988755332100 11
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS 234 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~ 234 (526)
.+.+.+...++|-|++....... ..+......++|+|+.
T Consensus 117 ~~~~~l~~~~vdGiI~~~~~~~~-~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 117 QLVETMLRRRPEAMVLSYDGHTE-QTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHTCCSEEEEECSCCCH-HHHHHHHHCCSCEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCCH-HHHHHHHhCCCCEEEE
Confidence 33444555689988775432221 2223345679999875
No 467
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=44.31 E-value=41 Score=31.11 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=24.7
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
..+.++|++|.. | ..-...+..|++.|++|+++-..
T Consensus 19 ~~~~~~vvIIG~--------G--~aGl~aA~~l~~~g~~v~vie~~ 54 (338)
T 3itj_A 19 SHVHNKVTIIGS--------G--PAAHTAAIYLARAEIKPILYEGM 54 (338)
T ss_dssp --CEEEEEEECC--------S--HHHHHHHHHHHHTTCCCEEECCS
T ss_pred CCCCCCEEEECc--------C--HHHHHHHHHHHHCCCCEEEEecC
Confidence 445578888832 2 33466788889999999999653
No 468
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=44.25 E-value=77 Score=29.68 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=26.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+|+++|.+. ..|+. .....+.+.|.+.|+++.+....
T Consensus 30 ~~~~vi~Np----~sg~~-~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 30 PASLLILNG----KSTDN-LPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp CCEEEEECS----SSTTC-HHHHHHHHHHHTTTCCEEEEECC
T ss_pred ceEEEEECC----CCCCC-chHHHHHHHHHHcCCcEEEEEec
Confidence 579888872 22333 55678899999999999887543
No 469
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=44.22 E-value=28 Score=33.04 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 195 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+.++|+|++..+..........+...|+++++
T Consensus 66 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~ 104 (354)
T 3q2i_A 66 SLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMT 104 (354)
T ss_dssp CHHHHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEE
Confidence 455667777899999988766555444445556766554
No 470
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=44.18 E-value=54 Score=27.04 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=42.8
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
++.||++.+- ...++..-..-++..|+..||+|..+...- -...+
T Consensus 17 ~~~~vlla~~-----~gd~HdiG~~~va~~l~~~G~eVi~lG~~~------------------------------p~e~l 61 (161)
T 2yxb_A 17 RRYKVLVAKM-----GLDGHDRGAKVVARALRDAGFEVVYTGLRQ------------------------------TPEQV 61 (161)
T ss_dssp CSCEEEEEEE-----SSSSCCHHHHHHHHHHHHTTCEEECCCSBC------------------------------CHHHH
T ss_pred CCCEEEEEeC-----CCCccHHHHHHHHHHHHHCCCEEEECCCCC------------------------------CHHHH
Confidence 4467877653 225566667778888999999999764321 11367
Q ss_pred HHHHHhcCCCEEEECC
Q 009759 197 ISEVARFKPDIIHASS 212 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~ 212 (526)
.+.+++.+||+|.+..
T Consensus 62 v~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 62 AMAAVQEDVDVIGVSI 77 (161)
T ss_dssp HHHHHHTTCSEEEEEE
T ss_pred HHHHHhcCCCEEEEEe
Confidence 7888888999998865
No 471
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=44.16 E-value=24 Score=33.23 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=26.9
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
+.|||++. ||.+..-..+++.|.++||+|.++....
T Consensus 24 ~~~~vlVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~~ 59 (351)
T 3ruf_A 24 SPKTWLIT---------GVAGFIGSNLLEKLLKLNQVVIGLDNFS 59 (351)
T ss_dssp SCCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCeEEEE---------CCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45778665 4445566779999999999999987654
No 472
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Probab=43.90 E-value=38 Score=31.89 Aligned_cols=35 Identities=9% Similarity=-0.144 Sum_probs=25.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCC-----CeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMG-----DEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G-----~~V~vi~~~~~ 162 (526)
|||++. ||.+..-..+++.|.+.| |+|.++.....
T Consensus 2 ~~vlVt---------GatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~ 41 (364)
T 2v6g_A 2 SVALIV---------GVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR 41 (364)
T ss_dssp EEEEEE---------TTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCC
T ss_pred CEEEEE---------CCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCC
Confidence 677655 444556677889999999 99998876543
No 473
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=43.62 E-value=99 Score=23.04 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=61.0
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH--cCCcEEEe-CC
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RA 423 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma--~G~PvI~~-~~ 423 (526)
.++.++.+.+ ..+.++......+..+...-+.++....+.. .|++++-... +.-|..+++.+. ...|+|.. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 3566666543 3344555555444443333333555555543 5888765432 334555555553 46777654 33
Q ss_pred CCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 424 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 424 gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
..........+.|..+++..+.+.+++..+|..++.
T Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 322111111145778999999999999999987653
No 474
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=43.55 E-value=56 Score=27.53 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.5
Q ss_pred cEEEEEeccCC---CCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSP---FSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p---~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
.++++|....- .+...|...-...|.+.|.+.|++|.+...
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~d 86 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKN 86 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 45655544332 245678889999999999999999998743
No 475
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=43.45 E-value=97 Score=22.88 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=58.6
Q ss_pred EEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHH--cCcEEEecCCC-CCCcHHHHHHHH--cCCcEEEeCC-C
Q 009759 352 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS--SGIPVVGVRA-G 424 (526)
Q Consensus 352 ~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~--~aDv~v~ps~~-e~~~~~ilEAma--~G~PvI~~~~-g 424 (526)
++.++.+.+ ....+.......+..+...-+.++....+. ..|++++-... +.-|..+++.+. ...|+|.... .
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 455566543 233444444433333333333345444443 36888765432 334555555553 5678765433 2
Q ss_pred CCCceecccCCCceeEeeCCCCHHHHHHHHHHhhh
Q 009759 425 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 459 (526)
Q Consensus 425 g~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~ 459 (526)
.........+.|..+++..+.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 83 SEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 22111111145778899999999999999987764
No 476
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=43.41 E-value=16 Score=34.89 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 114 NNSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+....|||+++.. +..-..++..|.+.||+|.++..+
T Consensus 25 m~~~~mkI~VIGa----------G~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 25 MEPFKHPIAILGA----------GSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp --CCCSCEEEECC----------SHHHHHHHHHHHTTTCCEEEECSC
T ss_pred ccccCCeEEEECc----------cHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445689999843 345566889999999999998654
No 477
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=43.28 E-value=1e+02 Score=27.39 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=26.1
Q ss_pred EEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 120 RIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 120 kIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
|+++|+ ||..-.-..+++.|.+.|++|.+...+.+
T Consensus 12 K~alVT--------Gas~GIG~aia~~la~~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 12 QQVLVT--------GGSSGIGAAIAMQFAELGAEVVALGLDAD 46 (242)
T ss_dssp CEEEEE--------TTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CEEEEe--------CCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 677776 34444457789999999999998876543
No 478
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=43.24 E-value=82 Score=28.16 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 135 GYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 135 G~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
|.+..-..+++.|.+.|++|.++....
T Consensus 16 as~gIG~~ia~~l~~~G~~V~~~~r~~ 42 (264)
T 2dtx_A 16 ASMGIGRAIAERFVDEGSKVIDLSIHD 42 (264)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 333445678999999999999887543
No 479
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=43.17 E-value=30 Score=32.16 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=34.8
Q ss_pred CCCCCcEEEEEeccCCC------CccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSPF------SYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p~------~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..++.++++|.+..-| +.+.|...-...|.+.|.++|++|.+..
T Consensus 64 m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~ 114 (305)
T 1f1j_A 64 MNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 114 (305)
T ss_dssp CCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEec
Confidence 55666788888665422 3456888889999999999999998874
No 480
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=43.12 E-value=20 Score=30.77 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=25.7
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCC--eEEEEEeCC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGD--EVMVVTTHE 161 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~--~V~vi~~~~ 161 (526)
+.|||++. ||.+..-..+++.|.++|+ +|.++....
T Consensus 4 ~~~~vlVt---------GatG~iG~~l~~~l~~~g~~~~V~~~~r~~ 41 (215)
T 2a35_A 4 TPKRVLLA---------GATGLTGEHLLDRILSEPTLAKVIAPARKA 41 (215)
T ss_dssp CCCEEEEE---------CTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred CCceEEEE---------CCCcHHHHHHHHHHHhCCCCCeEEEEeCCC
Confidence 34688665 4444556778899999998 888876544
No 481
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=43.06 E-value=35 Score=32.90 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=55.7
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCCcEEEEEeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES 401 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~ivG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~ 401 (526)
..|+.+|-=. ..-...+.++...++++++-+-+. ..+..++..++.++... .++.++++. .|++++.+..
T Consensus 3 ~rigiiG~G~--~~~~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~g~~~~-----~~~~ell~~~~vD~V~i~tp~ 74 (387)
T 3moi_A 3 IRFGICGLGF--AGSVLMAPAMRHHPDAQIVAACDP-NEDVRERFGKEYGIPVF-----ATLAEMMQHVQMDAVYIASPH 74 (387)
T ss_dssp EEEEEECCSH--HHHTTHHHHHHHCTTEEEEEEECS-CHHHHHHHHHHHTCCEE-----SSHHHHHHHSCCSEEEECSCG
T ss_pred eEEEEEeCCH--HHHHHHHHHHHhCCCeEEEEEEeC-CHHHHHHHHHHcCCCeE-----CCHHHHHcCCCCCEEEEcCCc
Confidence 3567776420 112234566777788887765543 33444444444344322 456666765 8999987765
Q ss_pred CCCcHHHHHHHHcCCcEEEeC
Q 009759 402 ETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 402 e~~~~~ilEAma~G~PvI~~~ 422 (526)
....-.+.+|+..|++|++-+
T Consensus 75 ~~H~~~~~~al~aGk~Vl~EK 95 (387)
T 3moi_A 75 QFHCEHVVQASEQGLHIIVEK 95 (387)
T ss_dssp GGHHHHHHHHHHTTCEEEECS
T ss_pred HHHHHHHHHHHHCCCceeeeC
Confidence 444556789999999998754
No 482
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=42.94 E-value=15 Score=31.65 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=27.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEe
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTT 159 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 159 (526)
||||+|..+ | ..++ +.....+++.+++.|++|+++..
T Consensus 2 mkiLiI~gs-p--~~~~-s~l~~~l~~~~~~~g~ev~~~dL 38 (192)
T 3f2v_A 2 PKTLIILAH-P--NISQ-STVHKHWSDAVRQHTDRFTVHEL 38 (192)
T ss_dssp CCEEEEECC-T--TGGG-CSHHHHHHHHHTTCTTTEEEEEH
T ss_pred CEEEEEEeC-C--CccH-HHHHHHHHHHHHhCCCeEEEEEc
Confidence 789988763 3 2232 36677888888889999998864
No 483
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=42.87 E-value=27 Score=31.27 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=27.1
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEG 162 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 162 (526)
||||+--+. |=.+.-+..|+++|++.| +|+|+++..+
T Consensus 1 M~ILlTNDD------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (244)
T 2e6c_A 1 MRILVTNDD------GIYSPGLWALAEAASQFG-EVFVAAPDTE 37 (244)
T ss_dssp CEEEEECSS------CTTCHHHHHHHHHHTTTS-EEEEEEECSS
T ss_pred CeEEEEcCC------CCCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 788665432 223456889999999988 9999998654
No 484
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=42.84 E-value=41 Score=30.65 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=35.0
Q ss_pred CCCCCcEEEEEeccCC-------------CCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 114 NNSRPRRIALFVEPSP-------------FSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 114 ~~~~~mkIliv~~~~p-------------~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
+..+++.+++|.+..- .+.+.|...-...|.+.|.++|++|.+..
T Consensus 12 m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~ 69 (271)
T 3h11_B 12 MKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 69 (271)
T ss_dssp CCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEe
Confidence 5666678877766532 34567888899999999999999998874
No 485
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=42.70 E-value=34 Score=31.82 Aligned_cols=90 Identities=16% Similarity=0.006 Sum_probs=51.2
Q ss_pred cEEEEEecccccccHHHHHHHHHhCCCcEEEE-EeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCC
Q 009759 324 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 402 (526)
Q Consensus 324 ~~i~~vG~l~~~Kg~~~li~a~~~l~~~~l~i-vG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e 402 (526)
..|+.+|-= .-|-..++.++...++++++- +...+. ..+.+.+..++. .. ++...+-..+|+++..+...
T Consensus 6 ~~vgiiG~G--~~g~~~~~~~l~~~~~~~lvav~d~~~~--~~~~~~~~~g~~---~~--~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLG--GIAQKAWLPVLAAASDWTLQGAWSPTRA--KALPICESWRIP---YA--DSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCS--THHHHTHHHHHHSCSSEEEEEEECSSCT--THHHHHHHHTCC---BC--SSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCC--HHHHHHHHHHHHhCCCeEEEEEECCCHH--HHHHHHHHcCCC---cc--CcHHHhhcCCCEEEEeCCch
Confidence 467777741 112223566777778888774 333222 222222222332 12 22223346789999877655
Q ss_pred CCcHHHHHHHHcCCcEEEeC
Q 009759 403 TLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 403 ~~~~~ilEAma~G~PvI~~~ 422 (526)
...-.+.+|+..|++|++-.
T Consensus 77 ~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 77 SHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp HHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHcCCeEEEeC
Confidence 55556778999999999753
No 486
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=42.55 E-value=26 Score=30.58 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=23.9
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
.|+++|+ ||.+..-..+++.|.+.|++|.++...
T Consensus 6 ~k~vlVT--------Gas~gIG~~~a~~l~~~G~~V~~~~r~ 39 (223)
T 3uce_A 6 KTVYVVL--------GGTSGIGAELAKQLESEHTIVHVASRQ 39 (223)
T ss_dssp CEEEEEE--------TTTSHHHHHHHHHHCSTTEEEEEESGG
T ss_pred CCEEEEE--------CCCCHHHHHHHHHHHHCCCEEEEecCC
Confidence 3666666 333444567889999999999887543
No 487
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=42.54 E-value=63 Score=31.43 Aligned_cols=97 Identities=8% Similarity=-0.083 Sum_probs=56.9
Q ss_pred CCcEEEEEecccc-cccHHHHHHHHHhCCCcEEEE-EeCCccHHHHHHHhcCCCeEEecccChhhHHHHHHc-------C
Q 009759 322 DKPLIVHVGRLGV-EKSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------G 392 (526)
Q Consensus 322 ~~~~i~~vG~l~~-~Kg~~~li~a~~~l~~~~l~i-vG~g~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~-------a 392 (526)
++..|+.+|-=.. .-| ...+.++...++++++. +-+ ...+..++..++.++.- ..-..++.++++. .
T Consensus 36 ~~~rvgiiG~G~~~~ig-~~h~~~~~~~~~~~lva~v~d-~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~v 111 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIG-AVHRIAARLDDHYELVAGALS-STPEKAEASGRELGLDP--SRVYSDFKEMAIREAKLKNGI 111 (417)
T ss_dssp CCEEEEEESCC--CHHH-HHHHHHHHHTSCEEEEEEECC-SSHHHHHHHHHHHTCCG--GGBCSCHHHHHHHHHHCTTCC
T ss_pred CcceEEEEcCCCchHHH-HHHHHHHhhCCCcEEEEEEeC-CCHHHHHHHHHHcCCCc--ccccCCHHHHHhcccccCCCC
Confidence 4567888884210 011 23345566667777763 333 33444555554433310 0112456666765 8
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCcEEEeC
Q 009759 393 DVFVMPSESETLGLVVLEAMSSGIPVVGVR 422 (526)
Q Consensus 393 Dv~v~ps~~e~~~~~ilEAma~G~PvI~~~ 422 (526)
|++++.+....-.-.+.+|+..|++|++-+
T Consensus 112 D~V~I~tp~~~H~~~~~~al~aGkhVl~EK 141 (417)
T 3v5n_A 112 EAVAIVTPNHVHYAAAKEFLKRGIHVICDK 141 (417)
T ss_dssp SEEEECSCTTSHHHHHHHHHTTTCEEEEES
T ss_pred cEEEECCCcHHHHHHHHHHHhCCCeEEEEC
Confidence 999988766555667889999999999764
No 488
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=42.51 E-value=83 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEE
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVT 158 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 158 (526)
..|||++.+++. +.. =-+.....+.+.|.++||+|.=+.
T Consensus 2 ~~MkIaigsDha-~~l--K~~~i~~~l~~~L~~~G~eV~D~G 40 (214)
T 3ono_A 2 NAMKIALMMENS-QAA--KNAMVAGELNSVAGGLGHDVFNVG 40 (214)
T ss_dssp CCCEEEECCCGG-GGG--GHHHHHHHHHHHHHHTTCEEEECS
T ss_pred CccEEEEECCCc-HHH--HChhHHHHHHHHHHHCCCEEEEcC
Confidence 469999998864 221 112334578899999999998775
No 489
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=42.50 E-value=46 Score=28.98 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEe
Q 009759 194 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYH 236 (526)
Q Consensus 194 ~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h 236 (526)
..+.+++++.++|++++..|........-.....|++-|+.+-
T Consensus 138 ~dL~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFa 180 (212)
T 3keo_A 138 STINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFS 180 (212)
T ss_dssp GGHHHHC-CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence 3677888888999999988765544344445567898887554
No 490
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=42.41 E-value=41 Score=33.89 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=55.2
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHH-HHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYL-REMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L-~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
.+|++++.+ +.....+++.| .+.|.+|..+................. .. ..... ..-...+
T Consensus 303 Gkrv~i~gd----------~~~~~~l~~~L~~elGm~vv~~gt~~~~~~~~~~~~l~~---~~----~~v~~-~~D~~el 364 (511)
T 2xdq_B 303 GKKAVVFGD----------NTHAAAMTKILSREMGIHVVWAGTYCKYDADWFRAEVAG---FC----DEVLI-TDDHTVV 364 (511)
T ss_dssp TCEEEEEEC----------HHHHHHHHHHHHHHHCCEEEEEEESCGGGHHHHHHHHTT---TS----SEEEE-CCCHHHH
T ss_pred CCEEEEEcC----------ChHHHHHHHHHHHhCCCEEEEeecCCCCchHHHHHHHHh---cC----CcEEE-eCCHHHH
Confidence 358877753 36789999999 799999977665433221110000000 00 00000 0123478
Q ss_pred HHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEE
Q 009759 197 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 233 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~ 233 (526)
.+.+++.+||+++.+.. ....+++.++|.+.
T Consensus 365 ~~~i~~~~pDl~ig~~~------~r~~a~k~gip~~~ 395 (511)
T 2xdq_B 365 GDAIARVEPAAIFGTQM------ERHVGKRLNIPCGV 395 (511)
T ss_dssp HHHHHHHCCSEEEECHH------HHHHHHHHTCCEEE
T ss_pred HHHHHhcCCCEEEeccc------hHHHHHhcCCCeEe
Confidence 88899999999998753 23345778999876
No 491
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=42.29 E-value=92 Score=26.22 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccH
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSP 194 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (526)
+..+.+|+++.+. ......+...|...|++|..+....
T Consensus 1 M~~~~~ilivdd~---------~~~~~~l~~~L~~~g~~v~~~~~~~--------------------------------- 38 (208)
T 1yio_A 1 MTAKPTVFVVDDD---------MSVREGLRNLLRSAGFEVETFDCAS--------------------------------- 38 (208)
T ss_dssp --CCCEEEEECSC---------HHHHHHHHHHHHTTTCEEEEESSHH---------------------------------
T ss_pred CCCCCEEEEEcCC---------HHHHHHHHHHHHhCCceEEEcCCHH---------------------------------
Q ss_pred HHHHHHHhcCCCEEEE----CCCchHHHHHHHHHHhcCCCEEEEE
Q 009759 195 RIISEVARFKPDIIHA----SSPGIMVFGALIIAKLLCVPIVMSY 235 (526)
Q Consensus 195 ~l~~~l~~~~pDiV~~----~~~~~~~~~~~~~~~~~~~p~v~~~ 235 (526)
.....+....||+|++ .......+...+.....++|+|+..
T Consensus 39 ~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls 83 (208)
T 1yio_A 39 TFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFIT 83 (208)
T ss_dssp HHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEe
No 492
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=42.27 E-value=1.2e+02 Score=23.69 Aligned_cols=70 Identities=6% Similarity=0.073 Sum_probs=38.0
Q ss_pred CcEEEEEeccCCCCccCchHHHHHHHHHHHHHC-CCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHHH
Q 009759 118 PRRIALFVEPSPFSYVSGYKNRFQNFIKYLREM-GDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRI 196 (526)
Q Consensus 118 ~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (526)
+.+++++.. |+ ....+++.|.+. |++|.-+...... ..+....+++.+ . ...+
T Consensus 4 ~~~vlIiGa-------G~---~g~~l~~~l~~~~g~~vvg~~d~~~~---~~g~~i~g~pV~------------g-~~~l 57 (141)
T 3nkl_A 4 KKKVLIYGA-------GS---AGLQLANMLRQGKEFHPIAFIDDDRK---KHKTTMQGITIY------------R-PKYL 57 (141)
T ss_dssp CEEEEEECC-------SH---HHHHHHHHHHHSSSEEEEEEECSCGG---GTTCEETTEEEE------------C-GGGH
T ss_pred CCEEEEECC-------CH---HHHHHHHHHHhCCCcEEEEEEECCcc---cCCCEecCeEEE------------C-HHHH
Confidence 457877743 33 345566666654 8887777654321 111111121111 1 2356
Q ss_pred HHHHHhcCCCEEEECCC
Q 009759 197 ISEVARFKPDIIHASSP 213 (526)
Q Consensus 197 ~~~l~~~~pDiV~~~~~ 213 (526)
.+++++.++|.|++..+
T Consensus 58 ~~~~~~~~id~viia~~ 74 (141)
T 3nkl_A 58 ERLIKKHCISTVLLAVP 74 (141)
T ss_dssp HHHHHHHTCCEEEECCT
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 67778889998887654
No 493
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=42.20 E-value=42 Score=30.43 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=32.9
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCC
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHE 161 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 161 (526)
.++||++.|+.. ...-|-.....+|+..|++.|..|.++-.+.
T Consensus 79 ~~~~kvI~vts~---kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 79 DSAVQSIVITSE---APGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp TCCCCEEEEECS---STTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCCeEEEEECC---CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 345788888763 2234667788999999999999999997654
No 494
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=42.17 E-value=2.1e+02 Score=26.50 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=59.8
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCC-----CccccCceeccccccCCCccccccc----h
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGV-----PQEFYGAKLIGSRSFPCPWYQKVPL----S 189 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~ 189 (526)
+||++++..-+ ..|....+..+++.....|++|.-+..+... ..+.....+..+....-........ .
T Consensus 2 krIgIltsGG~---~pG~Na~ir~vv~~a~~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~ 78 (319)
T 4a3s_A 2 KRIGVLTSGGD---SPGMNAAVRAVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKT 78 (319)
T ss_dssp CEEEEEEESSC---CTTHHHHHHHHHHHHHHTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHS
T ss_pred CEEEEECcCCC---cHHHHHHHHHHHHHHHHCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCcccc
Confidence 48999987643 3578888999999888899986665543311 0001000111111111000000000 1
Q ss_pred hcccHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHhcCCCEEEEEec
Q 009759 190 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 237 (526)
Q Consensus 190 ~~~~~~l~~~l~~~~pDiV~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 237 (526)
.....++.+.+++++.|.+++-.-....-.+..+ ...++|+|-.--.
T Consensus 79 ~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l-~~~~i~vigiPkT 125 (319)
T 4a3s_A 79 VEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKL-TEHGFPCVGVPGT 125 (319)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHH-HHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHH-hccCCcEEEeecc
Confidence 1123456777888999988775533222223333 3468888764443
No 495
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=42.17 E-value=39 Score=25.72 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=26.8
Q ss_pred CCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 117 RPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 117 ~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
+.|||++++.. . -|.+.....+-+.+.+.|.++.+-+..
T Consensus 3 ~~mkIlvvC~~----G-~~TSll~~kl~~~~~~~gi~~~i~~~~ 41 (109)
T 2l2q_A 3 GSMNILLVCGA----G-MSTSMLVQRIEKYAKSKNINATIEAIA 41 (109)
T ss_dssp CCEEEEEESSS----S-CSSCHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CceEEEEECCC----h-HhHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 34899888753 1 233366678888899999988765543
No 496
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=42.10 E-value=26 Score=30.21 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=24.3
Q ss_pred cEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeC
Q 009759 119 RRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTH 160 (526)
Q Consensus 119 mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 160 (526)
|||+++ ||.+..-..+++.|.+.|++|.++..+
T Consensus 1 m~i~ii---------Ga~G~~G~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALL---------GGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEE---------TTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CeEEEE---------cCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 688776 324455567889999999999987653
No 497
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=42.07 E-value=95 Score=28.63 Aligned_cols=90 Identities=7% Similarity=-0.064 Sum_probs=49.6
Q ss_pred CCCcEEEEEeccCCCCccCchHHHHHHHHHHHHHCCCeEEEEEeCCCCCccccCceeccccccCCCccccccchhcccHH
Q 009759 116 SRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPR 195 (526)
Q Consensus 116 ~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (526)
.+..+|+++.... ...-.......+.+++.+.|+++.+........ ....
T Consensus 3 ~~s~~Igvi~~~~---~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~---------------------------~~~~ 52 (332)
T 2rjo_A 3 LGQTTLACSFRSL---TNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSE---------------------------KGIA 52 (332)
T ss_dssp CCCCEEEEEESCT---TSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHH---------------------------HHHH
T ss_pred CCccEEEEEecCC---CcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHH---------------------------HHHH
Confidence 3456898887531 112234556677778888999998875432100 0012
Q ss_pred HHHHHHhcC--CCEEEECCCchHHH-HHHHHHHhcCCCEEEEE
Q 009759 196 IISEVARFK--PDIIHASSPGIMVF-GALIIAKLLCVPIVMSY 235 (526)
Q Consensus 196 l~~~l~~~~--pDiV~~~~~~~~~~-~~~~~~~~~~~p~v~~~ 235 (526)
..+.+...+ +|.|++........ ..+......++|+|+..
T Consensus 53 ~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 53 DIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIW 95 (332)
T ss_dssp HHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 233333446 99888866433221 12223345689988753
No 498
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=42.05 E-value=23 Score=26.25 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=34.8
Q ss_pred CcEEEEEeCC-ccHHHHHHHhcCCCeEEecccChhhHHHHHHcCcEEEecCCCCCCcHHHHHHHHcCCcEEE
Q 009759 350 EARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 420 (526)
Q Consensus 350 ~~~l~ivG~g-~~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~aDv~v~ps~~e~~~~~ilEAma~G~PvI~ 420 (526)
+..|++.|.- ..++++++++...+-.+.+.|+ ...|++|.- +..|.++-.|...|+|||.
T Consensus 10 G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVs--------kkt~~LV~g---~~~gsK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 10 GLTFVITGELSRPREEVKALLRRLGAKVTDSVS--------RKTSYLVVG---ENPGSKLEKARALGVPTLT 70 (92)
T ss_dssp TCEEECSTTTTSCHHHHHHHHHHTTCEEESCCS--------SSCCCBEEC---SSSSTTHHHHHCSSSCCEE
T ss_pred CcEEEEecCCCCCHHHHHHHHHHcCCEEeCccc--------CCeeEEEeC---CCCChHHHHHHHcCCcEEe
Confidence 4556666631 1566666666666666666664 234555543 2335677777777777764
No 499
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=41.99 E-value=1.2e+02 Score=23.41 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=61.7
Q ss_pred cEEEEEeCCc-cHHHHHHHhcCCCeEEecccChhhHHHHHHc--CcEEEecCCC-CCCcHHHHHHHH--------cCCcE
Q 009759 351 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--------SGIPV 418 (526)
Q Consensus 351 ~~l~ivG~g~-~~~~l~~l~~~~~V~~~g~v~~~~l~~~~~~--aDv~v~ps~~-e~~~~~ilEAma--------~G~Pv 418 (526)
.+++|+.+.+ ....+.......+..+.-.-+.++....+.. .|++|+-... +.-|..+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 4667776553 3344555555443322222233555555543 5888875443 334666666664 24566
Q ss_pred EEe-CCCCCCceecccCCCceeEeeCCCCHHHHHHHHHHhhhC
Q 009759 419 VGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 460 (526)
Q Consensus 419 I~~-~~gg~~e~v~~~~~~~~g~~~~~~d~~~la~ai~~ll~d 460 (526)
|.. ......... ..|..+++..+.+.+++.++|..++..
T Consensus 91 i~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 544 333233333 446678999999999999999888753
No 500
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=41.93 E-value=25 Score=30.59 Aligned_cols=41 Identities=27% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCCCcEEEEEeccCCCCccCchHHHHHHHHHHHHH-CCCeEEEEEeCC
Q 009759 115 NSRPRRIALFVEPSPFSYVSGYKNRFQNFIKYLRE-MGDEVMVVTTHE 161 (526)
Q Consensus 115 ~~~~mkIliv~~~~p~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~ 161 (526)
..+++||++.... +.+......+++.|.+ .|++|.++.+..
T Consensus 16 ~l~~k~IllgvTG------siaa~k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 16 MERKFHVLVGVTG------SVAALKLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp CCSSEEEEEEECS------SGGGGTHHHHHHHHC---CEEEEEEECTG
T ss_pred ccCCCEEEEEEeC------hHHHHHHHHHHHHHhcccCCEEEEEECHh
Confidence 3445788887652 2233456899999999 899999998765
Done!