Query 009763
Match_columns 526
No_of_seqs 1030 out of 2725
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 17:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0289 mRNA splicing factor [ 100.0 5E-112 1E-116 770.6 45.3 501 1-517 1-505 (506)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-49 2.3E-54 362.7 31.8 282 219-516 171-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 9.4E-47 2E-51 339.1 28.1 283 218-516 110-479 (480)
4 KOG0286 G-protein beta subunit 100.0 9.8E-45 2.1E-49 315.7 35.2 289 216-516 48-343 (343)
5 KOG0279 G protein beta subunit 100.0 1.8E-40 3.9E-45 287.5 32.1 291 218-518 10-313 (315)
6 KOG0271 Notchless-like WD40 re 100.0 3.1E-39 6.7E-44 290.7 23.8 253 256-522 106-443 (480)
7 KOG0315 G-protein beta subunit 100.0 5.5E-38 1.2E-42 267.6 29.5 271 236-521 11-291 (311)
8 KOG0284 Polyadenylation factor 100.0 1.1E-39 2.4E-44 296.0 19.8 282 222-519 95-381 (464)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-39 2.5E-44 297.3 19.2 242 217-468 211-458 (459)
10 KOG0645 WD40 repeat protein [G 100.0 4.2E-37 9.2E-42 265.4 32.1 290 217-518 8-311 (312)
11 KOG0279 G protein beta subunit 100.0 1.1E-37 2.4E-42 270.2 26.8 242 218-469 58-312 (315)
12 KOG0263 Transcription initiati 100.0 6.6E-38 1.4E-42 307.3 28.1 272 223-506 378-703 (707)
13 KOG0295 WD40 repeat-containing 100.0 6.6E-38 1.4E-42 280.8 25.1 284 219-517 104-405 (406)
14 KOG0285 Pleiotropic regulator 100.0 4.3E-37 9.2E-42 274.7 28.6 293 217-521 145-442 (460)
15 KOG0265 U5 snRNP-specific prot 100.0 1.5E-36 3.2E-41 265.7 28.4 285 218-517 42-337 (338)
16 PF08606 Prp19: Prp19/Pso4-lik 100.0 4.8E-39 1.1E-43 217.5 8.3 70 64-133 1-70 (70)
17 KOG0266 WD40 repeat-containing 100.0 8.1E-36 1.8E-40 300.6 34.1 289 218-518 154-454 (456)
18 KOG0273 Beta-transducin family 100.0 7.7E-36 1.7E-40 275.8 30.4 276 224-518 236-523 (524)
19 cd00200 WD40 WD40 domain, foun 100.0 8.1E-35 1.8E-39 277.3 38.0 281 220-516 6-289 (289)
20 KOG0291 WD40-repeat-containing 100.0 3.9E-35 8.5E-40 285.2 34.1 289 223-521 307-615 (893)
21 KOG0293 WD40 repeat-containing 100.0 6E-35 1.3E-39 265.5 30.4 290 217-521 218-516 (519)
22 KOG0318 WD40 repeat stress pro 100.0 2E-34 4.4E-39 269.8 34.0 292 219-518 186-602 (603)
23 PLN00181 protein SPA1-RELATED; 100.0 3.1E-33 6.8E-38 302.6 48.1 284 221-517 481-792 (793)
24 KOG0282 mRNA splicing factor [ 100.0 1.6E-36 3.4E-41 281.4 18.1 292 210-516 201-503 (503)
25 KOG0273 Beta-transducin family 100.0 5.5E-35 1.2E-39 270.2 27.3 282 222-521 177-485 (524)
26 KOG0318 WD40 repeat stress pro 100.0 6.5E-34 1.4E-38 266.3 34.5 295 218-520 142-562 (603)
27 KOG0286 G-protein beta subunit 100.0 3.8E-34 8.3E-39 249.7 27.8 235 223-468 97-343 (343)
28 KOG0296 Angio-associated migra 100.0 7E-34 1.5E-38 255.2 30.2 282 219-518 60-398 (399)
29 KOG0315 G-protein beta subunit 100.0 5.6E-34 1.2E-38 243.1 27.9 257 223-496 40-308 (311)
30 KOG0263 Transcription initiati 100.0 4E-35 8.8E-40 287.8 23.6 207 218-432 446-653 (707)
31 KOG0291 WD40-repeat-containing 100.0 1.6E-33 3.4E-38 274.0 34.2 283 223-521 265-553 (893)
32 KOG0643 Translation initiation 100.0 2.7E-34 5.7E-39 247.6 24.7 289 218-520 5-319 (327)
33 KOG0285 Pleiotropic regulator 100.0 2.5E-34 5.4E-39 257.1 21.4 249 256-521 142-392 (460)
34 KOG0316 Conserved WD40 repeat- 100.0 3.2E-33 6.8E-38 236.6 26.4 280 218-516 12-297 (307)
35 KOG0288 WD40 repeat protein Ti 100.0 2.5E-33 5.4E-38 255.3 27.6 284 217-516 169-459 (459)
36 KOG0278 Serine/threonine kinas 100.0 1.6E-34 3.4E-39 246.6 18.5 289 219-523 10-302 (334)
37 KOG0300 WD40 repeat-containing 100.0 4.2E-33 9.1E-38 245.5 27.0 290 217-520 142-478 (481)
38 KOG0276 Vesicle coat complex C 100.0 3.2E-33 7E-38 266.5 28.0 280 222-518 12-298 (794)
39 KOG0281 Beta-TrCP (transducin 100.0 1.3E-34 2.7E-39 257.9 16.4 277 222-521 196-480 (499)
40 KOG0282 mRNA splicing factor [ 100.0 4E-34 8.7E-39 265.5 16.9 256 255-520 204-464 (503)
41 KOG0319 WD40-repeat-containing 100.0 1E-32 2.3E-37 268.1 27.0 291 221-521 103-580 (775)
42 KOG1407 WD40 repeat protein [F 100.0 4.7E-32 1E-36 233.0 27.3 282 219-519 16-312 (313)
43 KOG0319 WD40-repeat-containing 100.0 1.7E-32 3.6E-37 266.7 26.9 287 222-517 322-618 (775)
44 KOG0284 Polyadenylation factor 100.0 4.3E-34 9.3E-39 259.8 14.5 242 218-469 133-379 (464)
45 KOG0292 Vesicle coat complex C 100.0 2.9E-32 6.3E-37 269.1 27.3 284 223-521 9-324 (1202)
46 KOG0640 mRNA cleavage stimulat 100.0 2.1E-32 4.5E-37 240.5 22.4 293 218-518 107-426 (430)
47 KOG0306 WD40-repeat-containing 100.0 9.4E-32 2E-36 261.6 28.2 287 219-519 369-665 (888)
48 KOG0275 Conserved WD40 repeat- 100.0 3.8E-33 8.1E-38 246.4 16.3 295 209-516 199-507 (508)
49 KOG0265 U5 snRNP-specific prot 100.0 4.3E-32 9.3E-37 237.8 22.8 254 257-520 39-298 (338)
50 KOG0310 Conserved WD40 repeat- 100.0 1.5E-31 3.3E-36 248.9 27.3 294 209-521 13-312 (487)
51 KOG0316 Conserved WD40 repeat- 100.0 6.6E-32 1.4E-36 228.7 22.6 247 257-521 9-260 (307)
52 KOG0295 WD40 repeat-containing 100.0 2.5E-32 5.5E-37 245.0 20.9 241 218-468 145-404 (406)
53 KOG0266 WD40 repeat-containing 100.0 6.3E-31 1.4E-35 265.1 31.9 253 259-521 152-412 (456)
54 KOG0277 Peroxisomal targeting 100.0 1.8E-31 3.9E-36 228.6 21.6 278 226-517 11-308 (311)
55 KOG0276 Vesicle coat complex C 100.0 5.5E-31 1.2E-35 251.3 25.7 232 223-463 55-290 (794)
56 KOG0268 Sof1-like rRNA process 100.0 3.5E-32 7.6E-37 243.9 16.1 278 220-519 63-346 (433)
57 KOG0772 Uncharacterized conser 100.0 7.8E-31 1.7E-35 245.1 25.0 296 219-518 163-487 (641)
58 KOG1446 Histone H3 (Lys4) meth 100.0 5.5E-29 1.2E-33 220.5 34.6 285 223-524 14-309 (311)
59 KOG2055 WD40 repeat protein [G 100.0 7.8E-30 1.7E-34 235.6 30.3 289 217-518 207-512 (514)
60 KOG0305 Anaphase promoting com 100.0 3.8E-30 8.2E-35 248.9 28.4 274 227-520 181-463 (484)
61 KOG0313 Microtubule binding pr 100.0 4E-30 8.7E-35 232.1 26.5 287 221-518 103-418 (423)
62 KOG0283 WD40 repeat-containing 100.0 7.5E-31 1.6E-35 260.0 23.8 292 218-521 262-579 (712)
63 KOG0973 Histone transcription 100.0 3.6E-30 7.9E-35 261.4 28.1 290 219-520 9-357 (942)
64 KOG0645 WD40 repeat protein [G 100.0 5.1E-29 1.1E-33 215.6 30.9 244 257-519 6-262 (312)
65 KOG0292 Vesicle coat complex C 100.0 7.4E-30 1.6E-34 252.3 26.9 246 219-469 47-320 (1202)
66 PTZ00421 coronin; Provisional 100.0 1.3E-28 2.8E-33 247.3 35.3 266 224-499 21-314 (493)
67 cd00200 WD40 WD40 domain, foun 100.0 7.9E-29 1.7E-33 235.9 31.9 247 259-521 3-252 (289)
68 KOG0274 Cdc4 and related F-box 100.0 4.3E-29 9.4E-34 250.9 30.7 276 221-522 206-486 (537)
69 PTZ00420 coronin; Provisional 100.0 3E-28 6.6E-33 245.5 35.4 249 241-500 50-318 (568)
70 KOG0281 Beta-TrCP (transducin 100.0 7.7E-31 1.7E-35 233.9 14.2 238 217-471 231-478 (499)
71 KOG0299 U3 snoRNP-associated p 100.0 1.2E-28 2.7E-33 227.8 29.2 283 217-512 136-450 (479)
72 PLN00181 protein SPA1-RELATED; 100.0 6.3E-28 1.4E-32 261.4 36.0 265 244-520 457-740 (793)
73 KOG0296 Angio-associated migra 100.0 3.2E-28 6.9E-33 218.9 26.0 245 218-469 101-397 (399)
74 KOG0641 WD40 repeat protein [G 100.0 4.6E-27 1E-31 198.1 31.0 285 224-518 33-349 (350)
75 KOG0308 Conserved WD40 repeat- 100.0 2.9E-29 6.2E-34 240.9 19.8 291 222-519 20-328 (735)
76 PTZ00421 coronin; Provisional 100.0 2E-27 4.2E-32 238.8 32.9 244 217-469 69-330 (493)
77 KOG0293 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 224.6 21.2 255 256-522 215-474 (519)
78 KOG0310 Conserved WD40 repeat- 100.0 2E-28 4.4E-33 228.1 22.7 232 223-467 68-304 (487)
79 KOG1407 WD40 repeat protein [F 100.0 3.1E-28 6.7E-33 209.6 22.1 247 259-521 14-264 (313)
80 KOG2096 WD40 repeat protein [G 100.0 1.1E-27 2.4E-32 211.6 26.1 288 217-516 80-400 (420)
81 KOG0294 WD40 repeat-containing 100.0 1.9E-27 4.1E-32 210.1 26.9 262 238-520 4-283 (362)
82 KOG0275 Conserved WD40 repeat- 100.0 8.6E-29 1.9E-33 218.9 17.3 251 263-522 211-471 (508)
83 KOG1036 Mitotic spindle checkp 100.0 1.1E-26 2.3E-31 205.1 28.1 284 220-523 10-321 (323)
84 KOG0277 Peroxisomal targeting 100.0 4.3E-28 9.2E-33 207.9 18.4 236 223-468 60-307 (311)
85 KOG0294 WD40 repeat-containing 100.0 5.4E-27 1.2E-31 207.2 25.7 259 219-496 39-305 (362)
86 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-26 8.8E-31 202.4 31.4 254 256-521 5-265 (311)
87 KOG0305 Anaphase promoting com 100.0 1.5E-27 3.2E-32 231.0 24.3 241 218-470 212-461 (484)
88 KOG1273 WD40 repeat protein [G 100.0 2.8E-27 6.2E-32 208.8 23.8 284 226-520 26-324 (405)
89 KOG0306 WD40-repeat-containing 100.0 9.2E-28 2E-32 234.0 22.8 257 205-469 394-663 (888)
90 KOG0647 mRNA export protein (c 100.0 8.8E-27 1.9E-31 204.7 25.6 271 218-506 22-311 (347)
91 KOG0288 WD40 repeat protein Ti 100.0 9.3E-27 2E-31 212.6 24.6 237 219-467 215-458 (459)
92 KOG0278 Serine/threonine kinas 100.0 4.3E-28 9.3E-33 207.3 14.8 243 218-472 54-299 (334)
93 KOG0313 Microtubule binding pr 100.0 6.8E-27 1.5E-31 211.3 23.2 247 263-523 103-381 (423)
94 KOG0640 mRNA cleavage stimulat 100.0 2E-27 4.3E-32 209.2 18.8 255 259-520 106-385 (430)
95 KOG0639 Transducin-like enhanc 100.0 4E-27 8.6E-32 219.6 20.7 279 221-517 417-703 (705)
96 PTZ00420 coronin; Provisional 100.0 8.5E-26 1.8E-30 227.9 31.8 228 218-455 69-319 (568)
97 KOG0274 Cdc4 and related F-box 100.0 3.5E-26 7.7E-31 229.9 28.1 236 219-472 245-484 (537)
98 KOG0641 WD40 repeat protein [G 100.0 3E-25 6.5E-30 187.2 28.0 251 215-469 81-348 (350)
99 KOG0643 Translation initiation 100.0 6.9E-26 1.5E-30 195.8 24.6 231 260-508 5-251 (327)
100 KOG1332 Vesicle coat complex C 100.0 7.7E-27 1.7E-31 199.1 18.5 249 217-469 5-285 (299)
101 KOG0264 Nucleosome remodeling 99.9 2.4E-26 5.2E-31 212.8 21.5 245 220-469 121-403 (422)
102 KOG0973 Histone transcription 99.9 5.5E-26 1.2E-30 231.2 26.1 249 218-470 64-355 (942)
103 KOG0269 WD40 repeat-containing 99.9 7.9E-27 1.7E-31 228.4 18.0 289 223-523 39-345 (839)
104 KOG0289 mRNA splicing factor [ 99.9 1.1E-25 2.5E-30 206.6 24.4 244 216-469 254-505 (506)
105 KOG1539 WD repeat protein [Gen 99.9 2.6E-25 5.6E-30 219.5 28.2 291 219-521 198-609 (910)
106 KOG0301 Phospholipase A2-activ 99.9 1.6E-25 3.6E-30 216.8 26.2 277 217-521 8-291 (745)
107 KOG1332 Vesicle coat complex C 99.9 3.4E-26 7.4E-31 195.2 18.8 252 262-519 8-287 (299)
108 KOG1274 WD40 repeat protein [G 99.9 5.3E-25 1.2E-29 219.7 29.5 278 218-515 8-297 (933)
109 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.6E-24 1.7E-28 204.2 36.3 268 235-521 1-282 (300)
110 KOG1408 WD40 repeat protein [F 99.9 1.3E-25 2.9E-30 217.5 23.5 286 221-519 367-714 (1080)
111 KOG2106 Uncharacterized conser 99.9 1.2E-24 2.6E-29 203.4 28.7 292 221-525 244-588 (626)
112 KOG0647 mRNA export protein (c 99.9 3.8E-25 8.2E-30 194.5 23.5 246 263-520 25-283 (347)
113 KOG0772 Uncharacterized conser 99.9 1.3E-25 2.7E-30 210.4 21.7 262 255-519 157-446 (641)
114 KOG0646 WD40 repeat protein [G 99.9 4.5E-25 9.8E-30 204.8 24.5 265 244-520 17-309 (476)
115 KOG0299 U3 snoRNP-associated p 99.9 6.5E-25 1.4E-29 203.3 24.6 237 220-469 199-456 (479)
116 KOG0646 WD40 repeat protein [G 99.9 2.8E-25 6.1E-30 206.1 20.7 230 223-460 81-337 (476)
117 KOG0267 Microtubule severing p 99.9 5.8E-27 1.3E-31 227.6 9.3 233 221-463 26-259 (825)
118 KOG4283 Transcription-coupled 99.9 2E-24 4.3E-29 189.1 24.2 286 217-517 37-364 (397)
119 KOG2445 Nuclear pore complex c 99.9 9.1E-24 2E-28 186.3 27.4 276 215-518 5-318 (361)
120 KOG0264 Nucleosome remodeling 99.9 5.8E-25 1.3E-29 203.7 20.8 253 263-519 122-405 (422)
121 KOG0639 Transducin-like enhanc 99.9 2.7E-25 5.9E-30 207.4 16.6 247 263-521 417-666 (705)
122 KOG0308 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 211.1 19.3 293 220-519 70-394 (735)
123 KOG0650 WD40 repeat nucleolar 99.9 3.7E-24 7.9E-29 204.0 24.1 306 199-515 377-732 (733)
124 KOG0268 Sof1-like rRNA process 99.9 1.7E-25 3.7E-30 201.1 13.9 245 258-522 59-306 (433)
125 KOG1036 Mitotic spindle checkp 99.9 8E-24 1.7E-28 187.0 23.6 244 264-521 12-265 (323)
126 KOG1274 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 210.2 27.5 244 263-519 11-263 (933)
127 KOG0283 WD40 repeat-containing 99.9 1.7E-24 3.8E-29 215.0 20.4 205 255-470 359-576 (712)
128 KOG2048 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 196.9 32.0 288 218-519 20-320 (691)
129 KOG0300 WD40 repeat-containing 99.9 5.5E-24 1.2E-28 188.1 20.5 254 256-522 139-432 (481)
130 KOG4328 WD40 protein [Function 99.9 1.5E-23 3.2E-28 194.2 23.7 292 218-519 181-496 (498)
131 KOG0267 Microtubule severing p 99.9 1.3E-25 2.9E-30 218.2 10.6 253 236-510 5-260 (825)
132 KOG1063 RNA polymerase II elon 99.9 2.3E-23 5E-28 201.9 25.7 299 217-520 261-650 (764)
133 KOG1539 WD repeat protein [Gen 99.9 1E-22 2.2E-27 201.4 28.8 283 223-517 244-647 (910)
134 KOG2106 Uncharacterized conser 99.9 6.8E-22 1.5E-26 185.1 32.5 278 222-515 199-518 (626)
135 KOG0321 WD40 repeat-containing 99.9 2.6E-23 5.6E-28 199.8 23.1 286 227-520 53-393 (720)
136 KOG2048 WD40 repeat protein [G 99.9 7E-22 1.5E-26 191.4 32.6 207 218-427 64-274 (691)
137 KOG1408 WD40 repeat protein [F 99.9 3.9E-23 8.5E-28 200.5 19.9 245 222-470 458-713 (1080)
138 KOG0269 WD40 repeat-containing 99.9 7.6E-24 1.6E-28 207.7 15.1 229 226-464 90-332 (839)
139 KOG0302 Ribosome Assembly prot 99.9 1.1E-22 2.3E-27 184.1 20.6 245 221-468 149-436 (440)
140 KOG1188 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 181.1 21.1 278 236-519 41-347 (376)
141 KOG1538 Uncharacterized conser 99.9 1.1E-22 2.4E-27 196.1 21.5 269 225-518 14-293 (1081)
142 KOG0301 Phospholipase A2-activ 99.9 1.5E-22 3.3E-27 196.3 22.6 231 220-470 54-288 (745)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-20 2.2E-25 182.4 33.9 253 225-498 32-300 (300)
144 KOG4283 Transcription-coupled 99.9 7.3E-22 1.6E-26 173.2 22.9 206 263-474 41-280 (397)
145 KOG1009 Chromatin assembly com 99.9 1E-21 2.2E-26 179.6 23.9 285 223-519 13-373 (434)
146 KOG2055 WD40 repeat protein [G 99.9 4.5E-22 9.7E-27 184.6 20.7 249 265-520 213-469 (514)
147 KOG0270 WD40 repeat-containing 99.9 3.9E-22 8.4E-27 184.3 20.1 234 227-469 177-448 (463)
148 KOG1034 Transcriptional repres 99.9 6.1E-22 1.3E-26 176.3 20.1 291 217-517 32-382 (385)
149 KOG1063 RNA polymerase II elon 99.9 1.2E-21 2.7E-26 190.0 23.1 297 217-518 355-763 (764)
150 KOG4378 Nuclear protein COP1 [ 99.9 8E-22 1.7E-26 184.2 20.3 267 219-500 30-305 (673)
151 KOG1273 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 172.8 20.4 244 268-521 26-283 (405)
152 KOG4328 WD40 protein [Function 99.9 1.5E-21 3.2E-26 181.0 20.8 268 251-521 172-453 (498)
153 KOG0270 WD40 repeat-containing 99.9 6.4E-21 1.4E-25 176.3 24.1 282 227-522 129-453 (463)
154 KOG1034 Transcriptional repres 99.9 7.2E-22 1.6E-26 175.8 16.2 245 221-470 87-381 (385)
155 KOG0302 Ribosome Assembly prot 99.9 7.5E-21 1.6E-25 172.3 21.0 249 262-515 148-435 (440)
156 KOG2919 Guanine nucleotide-bin 99.9 2.3E-20 4.9E-25 165.9 23.6 276 226-508 52-360 (406)
157 KOG0307 Vesicle coat complex C 99.9 4.4E-22 9.6E-27 203.8 14.5 282 228-521 11-330 (1049)
158 KOG0642 Cell-cycle nuclear pro 99.9 7.8E-21 1.7E-25 180.8 19.0 253 260-520 289-563 (577)
159 KOG4227 WD40 repeat protein [G 99.9 6.2E-20 1.3E-24 166.9 22.4 290 219-517 52-386 (609)
160 KOG0650 WD40 repeat nucleolar 99.9 3.3E-20 7.2E-25 177.3 21.6 249 257-516 392-678 (733)
161 KOG2096 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 161.0 23.6 260 259-521 80-363 (420)
162 KOG0649 WD40 repeat protein [G 99.9 9E-19 1.9E-23 149.9 25.5 270 226-516 13-314 (325)
163 PRK11028 6-phosphogluconolacto 99.9 3.7E-18 8E-23 166.7 33.7 273 238-519 5-305 (330)
164 KOG0303 Actin-binding protein 99.9 8.5E-20 1.8E-24 166.4 20.3 230 260-498 76-319 (472)
165 KOG4378 Nuclear protein COP1 [ 99.9 6E-20 1.3E-24 171.8 19.6 266 244-524 11-286 (673)
166 KOG0321 WD40 repeat-containing 99.8 7.2E-20 1.6E-24 176.3 20.4 251 271-524 55-353 (720)
167 KOG1007 WD repeat protein TSSC 99.8 3.6E-19 7.8E-24 156.0 22.7 270 244-519 39-362 (370)
168 KOG1517 Guanine nucleotide bin 99.8 4E-19 8.6E-24 180.0 26.1 291 225-522 1066-1385(1387)
169 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-17 4.2E-22 166.8 38.5 289 218-521 60-362 (466)
170 KOG2919 Guanine nucleotide-bin 99.8 3.8E-19 8.3E-24 158.2 21.6 247 268-520 52-329 (406)
171 KOG1445 Tumor-specific antigen 99.8 9.3E-20 2E-24 175.1 18.9 123 217-342 73-202 (1012)
172 KOG0642 Cell-cycle nuclear pro 99.8 5E-20 1.1E-24 175.3 16.4 219 219-438 290-571 (577)
173 KOG1963 WD40 repeat protein [G 99.8 2.4E-18 5.3E-23 172.2 29.2 295 217-519 199-539 (792)
174 KOG0307 Vesicle coat complex C 99.8 3E-20 6.5E-25 190.6 15.5 240 224-471 65-328 (1049)
175 KOG1445 Tumor-specific antigen 99.8 3.9E-19 8.5E-24 170.9 20.5 208 311-521 628-847 (1012)
176 KOG1523 Actin-related protein 99.8 2.3E-18 5.1E-23 153.2 23.9 233 223-458 10-265 (361)
177 KOG2110 Uncharacterized conser 99.8 3.8E-17 8.2E-22 148.4 32.1 286 223-520 5-332 (391)
178 KOG1272 WD40-repeat-containing 99.8 5.1E-20 1.1E-24 171.1 12.7 273 225-513 131-404 (545)
179 KOG0322 G-protein beta subunit 99.8 4.9E-19 1.1E-23 153.3 16.4 282 219-517 10-322 (323)
180 KOG0303 Actin-binding protein 99.8 1E-18 2.2E-23 159.4 19.1 213 303-521 74-297 (472)
181 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.4E-21 159.3 37.8 284 217-519 149-443 (466)
182 KOG2445 Nuclear pore complex c 99.8 7E-18 1.5E-22 149.4 21.1 209 307-519 10-257 (361)
183 KOG1009 Chromatin assembly com 99.8 5.4E-18 1.2E-22 155.4 20.8 248 218-469 60-371 (434)
184 KOG0644 Uncharacterized conser 99.8 2.6E-19 5.6E-24 177.2 12.6 282 219-522 186-472 (1113)
185 KOG1334 WD40 repeat protein [G 99.8 1.2E-18 2.5E-23 163.1 15.9 301 218-522 137-470 (559)
186 KOG1587 Cytoplasmic dynein int 99.8 2.9E-17 6.2E-22 164.4 26.1 270 244-520 221-518 (555)
187 KOG0290 Conserved WD40 repeat- 99.8 1.2E-17 2.5E-22 146.7 19.9 236 221-463 94-357 (364)
188 PRK11028 6-phosphogluconolacto 99.8 3.3E-16 7.1E-21 153.0 32.2 265 224-496 35-327 (330)
189 KOG0649 WD40 repeat protein [G 99.8 3.4E-17 7.3E-22 140.4 20.8 239 267-519 12-275 (325)
190 KOG1524 WD40 repeat-containing 99.8 9.1E-18 2E-22 158.8 19.0 260 222-514 13-282 (737)
191 KOG2139 WD40 repeat protein [G 99.8 1.8E-16 3.9E-21 143.4 26.5 283 225-518 100-431 (445)
192 KOG1963 WD40 repeat protein [G 99.8 3E-16 6.4E-21 157.4 29.9 287 227-521 164-490 (792)
193 KOG4227 WD40 repeat protein [G 99.8 3.3E-17 7.3E-22 149.3 20.0 255 259-520 50-324 (609)
194 KOG1240 Protein kinase contain 99.8 2.8E-16 6E-21 162.2 26.5 269 250-521 1034-1337(1431)
195 KOG1538 Uncharacterized conser 99.8 3.9E-17 8.4E-22 158.2 19.0 238 217-469 47-292 (1081)
196 KOG1587 Cytoplasmic dynein int 99.8 1.4E-16 3E-21 159.5 22.9 246 222-469 241-515 (555)
197 KOG0290 Conserved WD40 repeat- 99.8 2.3E-16 5.1E-21 138.6 21.3 256 256-520 36-320 (364)
198 KOG1524 WD40 repeat-containing 99.8 3.5E-17 7.5E-22 154.9 17.1 207 235-467 75-281 (737)
199 KOG2110 Uncharacterized conser 99.7 2.4E-15 5.2E-20 136.7 27.3 235 265-520 5-250 (391)
200 KOG0771 Prolactin regulatory e 99.7 3.3E-17 7.1E-22 151.4 15.3 198 227-428 148-354 (398)
201 KOG2111 Uncharacterized conser 99.7 1.3E-14 2.8E-19 129.6 31.0 281 225-518 7-322 (346)
202 KOG1240 Protein kinase contain 99.7 5.5E-16 1.2E-20 160.0 25.3 294 220-516 1045-1431(1431)
203 KOG4497 Uncharacterized conser 99.7 2E-15 4.4E-20 135.0 25.2 269 225-511 50-425 (447)
204 PRK01742 tolB translocation pr 99.7 4.7E-16 1E-20 156.7 22.5 234 244-499 183-426 (429)
205 KOG2321 WD40 repeat protein [G 99.7 1.8E-15 3.8E-20 144.7 24.0 283 222-523 50-348 (703)
206 KOG1310 WD40 repeat protein [G 99.7 1.8E-16 3.8E-21 150.6 15.8 215 218-432 45-307 (758)
207 KOG1523 Actin-related protein 99.7 1.7E-15 3.7E-20 135.1 20.7 201 264-469 9-235 (361)
208 KOG1354 Serine/threonine prote 99.7 1.1E-15 2.3E-20 137.5 19.2 247 223-470 25-359 (433)
209 KOG0771 Prolactin regulatory e 99.7 2.4E-16 5.3E-21 145.7 15.5 194 269-470 148-354 (398)
210 KOG4497 Uncharacterized conser 99.7 4.3E-15 9.3E-20 132.9 21.1 273 228-519 13-392 (447)
211 KOG1310 WD40 repeat protein [G 99.7 3.5E-16 7.5E-21 148.6 14.5 242 258-524 43-309 (758)
212 PF02239 Cytochrom_D1: Cytochr 99.7 2.6E-13 5.6E-18 132.5 32.9 277 235-520 5-349 (369)
213 KOG1334 WD40 repeat protein [G 99.7 8.7E-16 1.9E-20 144.1 14.7 260 256-520 133-426 (559)
214 KOG1188 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 132.9 19.2 190 278-472 41-244 (376)
215 KOG1007 WD repeat protein TSSC 99.7 5.8E-15 1.3E-19 129.9 18.5 227 285-519 38-290 (370)
216 PF10282 Lactonase: Lactonase, 99.7 1.4E-12 3.1E-17 127.5 37.7 279 238-519 2-323 (345)
217 KOG2139 WD40 repeat protein [G 99.7 3.5E-14 7.6E-19 128.7 22.7 236 266-510 99-367 (445)
218 PRK01742 tolB translocation pr 99.7 1.2E-14 2.5E-19 146.6 21.5 214 220-453 200-426 (429)
219 KOG2394 WD40 protein DMR-N9 [G 99.6 2.1E-14 4.6E-19 136.4 20.1 220 268-497 126-383 (636)
220 PRK03629 tolB translocation pr 99.6 2.4E-13 5.1E-18 136.8 28.3 233 245-498 179-427 (429)
221 PF04564 U-box: U-box domain; 99.6 4.1E-16 8.9E-21 113.5 5.8 52 1-53 5-57 (73)
222 KOG3881 Uncharacterized conser 99.6 5.8E-14 1.3E-18 128.7 20.5 264 224-499 56-342 (412)
223 KOG2111 Uncharacterized conser 99.6 4E-13 8.7E-18 120.2 24.6 235 267-522 7-260 (346)
224 PF10282 Lactonase: Lactonase, 99.6 4.9E-12 1.1E-16 123.7 33.8 263 225-496 38-345 (345)
225 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-14 2.5E-19 138.2 14.4 171 233-408 183-383 (636)
226 KOG0644 Uncharacterized conser 99.6 1.6E-15 3.4E-20 150.7 8.7 240 256-522 181-430 (1113)
227 PRK05137 tolB translocation pr 99.6 7.7E-13 1.7E-17 133.9 28.0 232 245-498 182-432 (435)
228 KOG1272 WD40-repeat-containing 99.6 5E-15 1.1E-19 138.2 10.1 228 267-517 131-361 (545)
229 PRK04922 tolB translocation pr 99.6 4.6E-13 1E-17 135.3 25.0 233 245-498 184-432 (433)
230 PRK05137 tolB translocation pr 99.6 1.8E-12 4E-17 131.1 28.5 215 287-521 182-415 (435)
231 PRK03629 tolB translocation pr 99.6 1.1E-12 2.3E-17 132.1 26.5 215 222-452 197-427 (429)
232 KOG1645 RING-finger-containing 99.6 2.4E-12 5.2E-17 118.7 26.1 256 247-519 175-462 (463)
233 COG2706 3-carboxymuconate cycl 99.6 2.9E-11 6.3E-16 110.8 32.6 271 222-497 38-345 (346)
234 PRK02889 tolB translocation pr 99.6 6.3E-13 1.4E-17 133.8 24.0 234 245-499 176-425 (427)
235 KOG1517 Guanine nucleotide bin 99.6 9.8E-13 2.1E-17 134.4 24.6 249 267-521 1066-1336(1387)
236 PRK02889 tolB translocation pr 99.6 1.1E-12 2.3E-17 132.2 24.9 219 221-453 193-425 (427)
237 KOG2315 Predicted translation 99.6 2.4E-12 5.3E-17 123.5 25.5 268 226-520 37-392 (566)
238 smart00504 Ubox Modified RING 99.6 4.1E-15 8.9E-20 106.1 5.2 52 1-53 2-53 (63)
239 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.3E-17 116.5 20.7 155 227-395 9-186 (194)
240 PRK04922 tolB translocation pr 99.5 1.8E-12 3.9E-17 131.0 25.1 216 221-452 201-432 (433)
241 PF08662 eIF2A: Eukaryotic tra 99.5 1.5E-12 3.2E-17 115.6 20.2 155 269-435 9-185 (194)
242 KOG3881 Uncharacterized conser 99.5 1.3E-12 2.8E-17 120.0 20.0 216 224-453 106-342 (412)
243 KOG0322 G-protein beta subunit 99.5 7.5E-14 1.6E-18 121.5 11.4 159 223-386 150-322 (323)
244 COG2706 3-carboxymuconate cycl 99.5 9.9E-11 2.2E-15 107.4 32.1 275 244-521 15-324 (346)
245 KOG0280 Uncharacterized conser 99.5 6.7E-12 1.5E-16 111.2 22.1 269 244-520 45-335 (339)
246 PF02239 Cytochrom_D1: Cytochr 99.5 6.5E-11 1.4E-15 115.7 28.9 241 227-483 40-356 (369)
247 KOG2314 Translation initiation 99.5 4E-11 8.6E-16 114.9 25.6 275 226-519 213-526 (698)
248 KOG2041 WD40 repeat protein [G 99.5 1.2E-11 2.6E-16 121.6 22.6 277 223-517 14-336 (1189)
249 KOG1354 Serine/threonine prote 99.5 3.4E-12 7.3E-17 115.3 16.6 253 265-521 25-362 (433)
250 KOG4547 WD40 repeat-containing 99.5 3.2E-11 7E-16 116.8 24.4 204 275-484 3-234 (541)
251 KOG0974 WD-repeat protein WDR6 99.5 4.4E-12 9.5E-17 130.0 19.5 272 225-520 9-290 (967)
252 TIGR02800 propeller_TolB tol-p 99.5 5.1E-11 1.1E-15 120.5 27.3 204 244-463 169-385 (417)
253 PRK00178 tolB translocation pr 99.5 8.6E-11 1.9E-15 119.1 28.8 232 246-498 180-427 (430)
254 KOG1409 Uncharacterized conser 99.4 1.9E-11 4.1E-16 110.6 19.8 244 218-470 19-270 (404)
255 KOG4547 WD40 repeat-containing 99.4 1.9E-11 4.1E-16 118.3 21.1 187 233-429 3-221 (541)
256 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.8E-09 3.8E-14 103.2 34.1 257 245-521 27-333 (352)
257 TIGR02800 propeller_TolB tol-p 99.4 1.5E-10 3.3E-15 117.1 27.4 213 287-519 170-398 (417)
258 PRK04792 tolB translocation pr 99.4 1.3E-10 2.9E-15 117.5 26.7 232 246-498 199-446 (448)
259 COG5354 Uncharacterized protei 99.4 2.7E-10 5.8E-15 108.4 26.4 278 223-521 71-398 (561)
260 KOG2314 Translation initiation 99.4 1E-10 2.3E-15 112.1 23.8 286 218-520 244-575 (698)
261 PRK00178 tolB translocation pr 99.4 1.6E-10 3.5E-15 117.1 26.3 216 221-452 196-427 (430)
262 PRK04792 tolB translocation pr 99.4 3E-10 6.5E-15 114.9 26.5 213 288-520 199-427 (448)
263 KOG2321 WD40 repeat protein [G 99.4 6.6E-11 1.4E-15 113.9 20.2 234 226-469 97-342 (703)
264 KOG1064 RAVE (regulator of V-A 99.4 5.2E-12 1.1E-16 135.5 13.0 201 218-438 2203-2408(2439)
265 PRK01029 tolB translocation pr 99.3 7.3E-10 1.6E-14 111.2 27.2 238 245-499 165-425 (428)
266 KOG4190 Uncharacterized conser 99.3 7.5E-12 1.6E-16 119.6 12.1 288 219-514 731-1032(1034)
267 PRK01029 tolB translocation pr 99.3 4.9E-10 1.1E-14 112.4 25.7 221 224-454 185-426 (428)
268 KOG0280 Uncharacterized conser 99.3 1.8E-10 3.9E-15 102.2 18.7 234 222-461 68-320 (339)
269 KOG0974 WD-repeat protein WDR6 99.3 4.6E-11 1E-15 122.7 17.2 195 225-429 89-289 (967)
270 COG5170 CDC55 Serine/threonine 99.3 4.5E-11 9.7E-16 106.7 14.8 241 222-463 25-358 (460)
271 COG4946 Uncharacterized protei 99.3 1.1E-08 2.3E-13 96.8 31.0 213 233-461 276-507 (668)
272 PF04762 IKI3: IKI3 family; I 99.3 7.4E-09 1.6E-13 112.3 33.8 291 222-521 74-459 (928)
273 KOG2315 Predicted translation 99.3 1.1E-09 2.4E-14 105.5 23.5 228 227-469 129-389 (566)
274 COG5354 Uncharacterized protei 99.3 1.6E-09 3.6E-14 103.2 23.8 272 224-519 33-349 (561)
275 KOG4190 Uncharacterized conser 99.3 1.4E-11 3.1E-16 117.7 10.1 205 258-468 728-946 (1034)
276 PF11789 zf-Nse: Zinc-finger o 99.3 3.1E-12 6.7E-17 86.7 3.3 42 1-42 12-55 (57)
277 PF04762 IKI3: IKI3 family; I 99.3 1.1E-08 2.4E-13 110.9 31.8 284 225-517 23-378 (928)
278 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.3E-08 9.3E-13 93.9 30.3 234 231-482 53-338 (352)
279 KOG0309 Conserved WD40 repeat- 99.2 1.5E-10 3.3E-15 114.5 13.5 287 223-519 24-340 (1081)
280 KOG1832 HIV-1 Vpr-binding prot 99.2 1.4E-11 3E-16 123.8 5.9 266 218-507 1096-1378(1516)
281 KOG1064 RAVE (regulator of V-A 99.2 1.7E-10 3.8E-15 124.1 13.5 194 264-483 2207-2407(2439)
282 PLN02919 haloacid dehalogenase 99.2 5.9E-08 1.3E-12 107.4 33.8 239 227-471 571-889 (1057)
283 KOG4532 WD40-like repeat conta 99.2 5.2E-09 1.1E-13 91.9 20.1 234 228-469 72-330 (344)
284 TIGR03300 assembly_YfgL outer 99.2 7.1E-08 1.5E-12 96.1 31.0 266 234-521 64-341 (377)
285 KOG2041 WD40 repeat protein [G 99.2 7.4E-10 1.6E-14 109.3 15.9 235 265-509 14-279 (1189)
286 PLN02919 haloacid dehalogenase 99.2 7.9E-08 1.7E-12 106.4 33.7 242 270-522 572-892 (1057)
287 KOG4532 WD40-like repeat conta 99.1 6E-09 1.3E-13 91.5 18.5 193 237-429 130-332 (344)
288 KOG1409 Uncharacterized conser 99.1 2.3E-09 5E-14 97.3 16.0 253 256-520 15-272 (404)
289 KOG3914 WD repeat protein WDR4 99.1 8.6E-10 1.9E-14 102.3 13.0 215 226-452 65-299 (390)
290 PF15492 Nbas_N: Neuroblastoma 99.1 9.6E-08 2.1E-12 85.5 25.1 202 316-521 3-262 (282)
291 KOG1912 WD40 repeat protein [G 99.1 9.8E-09 2.1E-13 102.5 20.2 288 225-523 17-369 (1062)
292 TIGR03300 assembly_YfgL outer 99.1 9.5E-08 2.1E-12 95.2 27.6 262 234-515 104-376 (377)
293 PF08450 SGL: SMP-30/Gluconola 99.1 9.8E-07 2.1E-11 82.2 31.7 218 228-461 4-244 (246)
294 PF08450 SGL: SMP-30/Gluconola 99.0 1.2E-06 2.6E-11 81.6 31.1 223 270-507 4-244 (246)
295 KOG4714 Nucleoporin [Nuclear s 99.0 6.8E-09 1.5E-13 90.8 13.9 195 226-429 39-255 (319)
296 COG4946 Uncharacterized protei 99.0 3.2E-07 7E-12 87.1 25.9 215 274-507 275-507 (668)
297 PRK04043 tolB translocation pr 99.0 1.5E-07 3.2E-12 94.0 24.8 191 225-430 189-402 (419)
298 PRK04043 tolB translocation pr 99.0 5.8E-07 1.3E-11 89.8 28.4 191 312-520 189-402 (419)
299 KOG0882 Cyclophilin-related pe 99.0 1.2E-08 2.6E-13 95.8 15.1 244 222-471 8-306 (558)
300 COG5170 CDC55 Serine/threonine 99.0 1.5E-08 3.2E-13 90.9 14.8 250 265-518 26-367 (460)
301 KOG1912 WD40 repeat protein [G 99.0 8.5E-07 1.8E-11 89.1 27.8 292 220-519 52-552 (1062)
302 KOG2066 Vacuolar assembly/sort 99.0 3.9E-08 8.4E-13 99.1 18.1 183 266-470 40-233 (846)
303 PF07433 DUF1513: Protein of u 99.0 2.6E-06 5.5E-11 78.9 28.7 232 227-469 8-282 (305)
304 KOG2066 Vacuolar assembly/sort 99.0 1.9E-08 4E-13 101.3 15.7 185 223-429 39-234 (846)
305 KOG1275 PAB-dependent poly(A) 98.9 9.1E-09 2E-13 104.6 13.0 266 223-516 54-340 (1118)
306 KOG3914 WD repeat protein WDR4 98.9 1.4E-08 3.1E-13 94.3 12.7 164 268-439 65-234 (390)
307 KOG2114 Vacuolar assembly/sort 98.9 5.1E-07 1.1E-11 91.8 24.4 194 272-470 30-243 (933)
308 KOG2695 WD40 repeat protein [G 98.9 1.2E-08 2.6E-13 92.9 10.8 176 227-409 215-402 (425)
309 KOG1832 HIV-1 Vpr-binding prot 98.9 1.4E-09 2.9E-14 109.9 4.6 220 256-505 1092-1318(1516)
310 PF15492 Nbas_N: Neuroblastoma 98.9 2E-06 4.2E-11 77.3 24.0 205 218-439 38-270 (282)
311 KOG2114 Vacuolar assembly/sort 98.8 1.1E-06 2.3E-11 89.6 23.5 207 225-437 27-252 (933)
312 PF13360 PQQ_2: PQQ-like domai 98.8 2.7E-06 6E-11 78.8 25.0 215 244-471 2-231 (238)
313 KOG0882 Cyclophilin-related pe 98.8 6.8E-08 1.5E-12 90.9 13.2 216 220-437 50-314 (558)
314 KOG0309 Conserved WD40 repeat- 98.8 1.6E-08 3.5E-13 100.5 9.4 206 218-429 109-340 (1081)
315 KOG1275 PAB-dependent poly(A) 98.8 1.5E-07 3.3E-12 96.0 15.7 181 234-427 146-341 (1118)
316 KOG1645 RING-finger-containing 98.8 4.2E-07 9.1E-12 84.6 16.6 242 218-469 188-460 (463)
317 PLN03208 E3 ubiquitin-protein 98.8 8.3E-09 1.8E-13 87.7 5.0 54 1-55 19-88 (193)
318 KOG2695 WD40 repeat protein [G 98.8 3.5E-08 7.6E-13 89.9 8.7 160 281-451 228-401 (425)
319 PRK11138 outer membrane biogen 98.7 1.1E-05 2.3E-10 80.9 27.0 266 235-518 120-394 (394)
320 KOG1920 IkappaB kinase complex 98.7 1.6E-05 3.5E-10 84.3 27.9 202 224-432 69-326 (1265)
321 KOG4649 PQQ (pyrrolo-quinoline 98.7 1.9E-05 4.1E-10 69.8 23.8 265 234-520 62-353 (354)
322 PRK11138 outer membrane biogen 98.7 2.1E-05 4.6E-10 78.7 27.2 267 234-521 68-356 (394)
323 PF00400 WD40: WD domain, G-be 98.7 6.9E-08 1.5E-12 61.1 6.0 39 255-293 1-39 (39)
324 KOG3621 WD40 repeat-containing 98.7 5.3E-06 1.1E-10 83.0 21.7 118 224-341 34-155 (726)
325 KOG1920 IkappaB kinase complex 98.7 2.2E-05 4.7E-10 83.3 27.0 200 265-470 68-322 (1265)
326 PF07433 DUF1513: Protein of u 98.7 9.5E-05 2.1E-09 68.6 28.4 225 268-512 7-279 (305)
327 PF13360 PQQ_2: PQQ-like domai 98.6 1.5E-05 3.2E-10 73.8 23.5 191 234-434 35-236 (238)
328 KOG4642 Chaperone-dependent E3 98.6 9.1E-09 2E-13 89.4 1.3 52 1-53 212-264 (284)
329 KOG3617 WD40 and TPR repeat-co 98.6 6.1E-07 1.3E-11 90.9 14.1 271 228-517 20-332 (1416)
330 PRK02888 nitrous-oxide reducta 98.6 2.5E-05 5.5E-10 79.1 25.6 167 331-507 214-450 (635)
331 KOG4714 Nucleoporin [Nuclear s 98.6 4.7E-07 1E-11 79.5 11.3 150 232-388 98-255 (319)
332 PF00930 DPPIV_N: Dipeptidyl p 98.6 2.6E-05 5.6E-10 76.7 24.6 264 232-507 1-346 (353)
333 PF00400 WD40: WD domain, G-be 98.6 3.3E-07 7.1E-12 57.9 6.6 38 301-338 2-39 (39)
334 PF04053 Coatomer_WDAD: Coatom 98.5 2.9E-05 6.2E-10 77.5 22.5 220 264-518 31-262 (443)
335 PF08553 VID27: VID27 cytoplas 98.4 0.00012 2.6E-09 77.1 25.5 139 284-427 501-646 (794)
336 cd00216 PQQ_DH Dehydrogenases 98.4 0.00065 1.4E-08 69.9 30.1 198 235-438 61-329 (488)
337 PF13923 zf-C3HC4_2: Zinc fing 98.3 6.7E-07 1.4E-11 56.2 4.0 39 3-41 1-39 (39)
338 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0013 2.8E-08 65.8 29.5 206 246-460 62-277 (410)
339 KOG3621 WD40 repeat-containing 98.3 1.4E-05 3.1E-10 80.0 15.0 202 265-471 33-245 (726)
340 PF06977 SdiA-regulated: SdiA- 98.3 0.00027 5.7E-09 64.7 21.5 200 224-425 22-247 (248)
341 KOG0883 Cyclophilin type, U bo 98.3 4.6E-07 9.9E-12 83.6 3.3 53 2-55 42-94 (518)
342 PF08596 Lgl_C: Lethal giant l 98.3 0.00021 4.6E-09 70.4 22.1 240 225-469 3-334 (395)
343 PF04053 Coatomer_WDAD: Coatom 98.3 0.00021 4.5E-09 71.4 22.2 143 309-471 31-174 (443)
344 PF11768 DUF3312: Protein of u 98.3 4.7E-05 1E-09 75.3 17.1 115 267-389 207-331 (545)
345 PF02897 Peptidase_S9_N: Proly 98.2 0.0049 1.1E-07 62.3 31.8 245 225-478 125-410 (414)
346 KOG0823 Predicted E3 ubiquitin 98.2 1.4E-06 3.1E-11 75.5 4.7 53 2-55 49-104 (230)
347 PF06977 SdiA-regulated: SdiA- 98.2 0.002 4.4E-08 59.0 25.2 198 260-463 16-242 (248)
348 PF11768 DUF3312: Protein of u 98.2 4.8E-05 1E-09 75.3 15.1 112 227-344 209-333 (545)
349 cd00216 PQQ_DH Dehydrogenases 98.2 0.0043 9.4E-08 63.8 30.0 224 236-471 111-423 (488)
350 KOG1008 Uncharacterized conser 98.2 6.1E-07 1.3E-11 88.4 1.4 198 224-429 57-276 (783)
351 PF00780 CNH: CNH domain; Int 98.2 0.0023 5.1E-08 60.6 25.9 226 275-521 5-258 (275)
352 PRK02888 nitrous-oxide reducta 98.2 0.00065 1.4E-08 69.2 22.5 211 232-462 201-451 (635)
353 KOG1008 Uncharacterized conser 98.2 1.4E-06 3E-11 86.0 3.5 249 266-519 57-336 (783)
354 PF06433 Me-amine-dh_H: Methyl 98.1 0.0063 1.4E-07 57.5 27.4 260 245-521 17-323 (342)
355 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0063 1.4E-07 54.3 26.2 141 235-387 23-165 (354)
356 PF08596 Lgl_C: Lethal giant l 98.1 0.0013 2.7E-08 65.0 23.2 243 267-517 3-334 (395)
357 COG3391 Uncharacterized conser 98.1 0.0035 7.5E-08 62.3 26.5 221 227-453 77-309 (381)
358 PF00780 CNH: CNH domain; Int 98.0 0.0074 1.6E-07 57.1 26.8 226 233-483 5-264 (275)
359 PF06433 Me-amine-dh_H: Methyl 98.0 0.013 2.9E-07 55.4 27.3 246 227-485 39-331 (342)
360 KOG3617 WD40 and TPR repeat-co 98.0 0.00011 2.4E-09 75.1 13.9 148 226-387 62-220 (1416)
361 TIGR00599 rad18 DNA repair pro 98.0 3.5E-06 7.6E-11 81.3 3.3 50 1-51 27-76 (397)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.029 6.2E-07 58.1 32.1 193 235-433 69-338 (527)
363 PF03178 CPSF_A: CPSF A subuni 98.0 0.0018 3.9E-08 62.9 21.7 177 332-519 2-203 (321)
364 PF14583 Pectate_lyase22: Olig 98.0 0.02 4.4E-07 55.2 31.2 275 230-518 42-381 (386)
365 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0073 1.6E-07 59.4 25.4 234 223-462 42-347 (353)
366 COG3391 Uncharacterized conser 97.9 0.029 6.2E-07 55.8 31.2 258 247-519 13-284 (381)
367 COG3386 Gluconolactonase [Carb 97.9 0.0093 2E-07 56.7 24.6 221 272-507 31-274 (307)
368 KOG3039 Uncharacterized conser 97.9 8.9E-06 1.9E-10 70.5 3.8 56 1-57 222-281 (303)
369 COG0823 TolB Periplasmic compo 97.8 0.0011 2.4E-08 66.1 17.7 144 309-462 191-345 (425)
370 COG0823 TolB Periplasmic compo 97.8 0.0033 7.2E-08 62.7 20.3 195 255-463 182-390 (425)
371 KOG2395 Protein involved in va 97.8 0.0058 1.3E-07 59.9 20.7 142 280-427 349-499 (644)
372 COG3386 Gluconolactonase [Carb 97.8 0.017 3.8E-07 54.9 24.0 219 231-462 32-275 (307)
373 PF14870 PSII_BNR: Photosynthe 97.8 0.04 8.7E-07 52.1 33.3 277 223-515 16-301 (302)
374 PF03178 CPSF_A: CPSF A subuni 97.8 0.013 2.8E-07 56.9 23.2 174 245-428 2-202 (321)
375 PF02897 Peptidase_S9_N: Proly 97.7 0.043 9.3E-07 55.4 27.9 238 268-521 126-407 (414)
376 KOG4640 Anaphase-promoting com 97.7 0.00015 3.3E-09 72.0 9.5 92 224-319 21-114 (665)
377 KOG0287 Postreplication repair 97.7 7.6E-06 1.7E-10 74.3 0.2 52 1-53 24-75 (442)
378 KOG2164 Predicted E3 ubiquitin 97.7 2.7E-05 5.8E-10 75.6 3.3 54 1-55 187-245 (513)
379 PF13920 zf-C3HC4_3: Zinc fing 97.7 7.4E-05 1.6E-09 49.8 4.5 44 2-46 4-48 (50)
380 PF04841 Vps16_N: Vps16, N-ter 97.7 0.055 1.2E-06 54.2 26.4 193 288-500 62-271 (410)
381 PF08553 VID27: VID27 cytoplas 97.6 0.01 2.2E-07 62.9 21.7 143 236-386 494-646 (794)
382 PF13445 zf-RING_UBOX: RING-ty 97.6 6.2E-05 1.3E-09 47.7 3.4 31 3-35 1-35 (43)
383 KOG4441 Proteins containing BT 97.6 0.015 3.2E-07 60.7 22.8 233 232-481 282-555 (571)
384 PF15390 DUF4613: Domain of un 97.6 0.066 1.4E-06 53.7 25.6 151 225-386 21-185 (671)
385 PF05096 Glu_cyclase_2: Glutam 97.6 0.05 1.1E-06 49.8 23.8 190 223-420 44-251 (264)
386 PF15227 zf-C3HC4_4: zinc fing 97.6 6.3E-05 1.4E-09 47.8 3.2 33 3-36 1-33 (42)
387 PF13639 zf-RING_2: Ring finge 97.5 0.00012 2.6E-09 47.4 3.8 39 2-41 2-43 (44)
388 PF05694 SBP56: 56kDa selenium 97.5 0.0088 1.9E-07 58.1 17.8 203 321-523 86-347 (461)
389 KOG4640 Anaphase-promoting com 97.5 0.00054 1.2E-08 68.3 9.6 94 266-367 21-115 (665)
390 smart00320 WD40 WD40 repeats. 97.5 0.00029 6.4E-09 43.2 5.3 39 255-293 2-40 (40)
391 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.011 2.4E-07 46.0 14.5 100 268-382 2-109 (111)
392 cd00162 RING RING-finger (Real 97.5 0.00015 3.3E-09 47.0 3.8 44 2-45 1-45 (45)
393 PF14583 Pectate_lyase22: Olig 97.4 0.14 2.9E-06 49.7 25.2 243 251-509 16-303 (386)
394 PF00097 zf-C3HC4: Zinc finger 97.4 0.00032 7E-09 44.5 4.4 39 3-41 1-41 (41)
395 PF04641 Rtf2: Rtf2 RING-finge 97.4 0.00018 4E-09 66.8 4.3 53 1-55 114-170 (260)
396 KOG1897 Damage-specific DNA bi 97.3 0.27 5.9E-06 52.4 26.8 278 225-521 585-901 (1096)
397 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.026 5.6E-07 44.0 14.9 100 226-335 2-109 (111)
398 KOG1897 Damage-specific DNA bi 97.3 0.34 7.3E-06 51.7 29.3 285 224-519 488-816 (1096)
399 COG3490 Uncharacterized protei 97.3 0.075 1.6E-06 48.4 19.4 201 313-522 70-314 (366)
400 KOG4441 Proteins containing BT 97.3 0.037 8E-07 57.8 20.5 228 276-519 284-547 (571)
401 PHA02713 hypothetical protein; 97.3 0.043 9.2E-07 57.4 21.1 217 288-520 273-535 (557)
402 COG5432 RAD18 RING-finger-cont 97.3 0.00012 2.5E-09 65.3 1.6 44 2-46 27-70 (391)
403 COG3490 Uncharacterized protei 97.3 0.11 2.5E-06 47.3 20.2 208 228-438 72-320 (366)
404 PF05694 SBP56: 56kDa selenium 97.2 0.16 3.5E-06 49.7 22.5 222 235-462 87-393 (461)
405 PRK13616 lipoprotein LpqB; Pro 97.2 0.069 1.5E-06 55.9 21.8 186 309-512 348-562 (591)
406 PHA02713 hypothetical protein; 97.2 0.014 3.1E-07 60.9 17.0 187 234-432 303-537 (557)
407 KOG3039 Uncharacterized conser 97.2 0.00024 5.2E-09 61.9 2.7 32 2-34 45-76 (303)
408 smart00320 WD40 WD40 repeats. 97.2 0.001 2.2E-08 40.6 5.1 38 301-338 3-40 (40)
409 COG5276 Uncharacterized conser 97.2 0.19 4.2E-06 46.1 28.8 273 224-518 87-369 (370)
410 COG3204 Uncharacterized protei 97.2 0.17 3.7E-06 46.5 20.5 196 224-420 86-304 (316)
411 COG5276 Uncharacterized conser 97.1 0.21 4.6E-06 45.8 23.4 201 310-523 86-290 (370)
412 KOG2979 Protein involved in DN 97.1 0.00016 3.5E-09 63.9 0.9 43 2-44 178-222 (262)
413 PRK13616 lipoprotein LpqB; Pro 97.1 0.11 2.3E-06 54.5 21.5 230 244-483 328-581 (591)
414 KOG2079 Vacuolar assembly/sort 97.0 0.012 2.5E-07 62.7 13.7 107 228-339 92-202 (1206)
415 PF14835 zf-RING_6: zf-RING of 97.0 0.00014 3.1E-09 49.4 -0.1 50 1-52 8-57 (65)
416 COG3204 Uncharacterized protei 97.0 0.27 5.8E-06 45.3 21.1 198 261-463 81-304 (316)
417 PRK13684 Ycf48-like protein; P 97.0 0.43 9.3E-06 46.5 32.7 277 223-517 45-330 (334)
418 smart00184 RING Ring finger. E 97.0 0.00092 2E-08 41.6 3.2 38 3-41 1-39 (39)
419 KOG2079 Vacuolar assembly/sort 96.9 0.0043 9.3E-08 65.8 9.4 103 368-470 98-203 (1206)
420 PF04641 Rtf2: Rtf2 RING-finge 96.9 0.0012 2.6E-08 61.4 5.0 55 2-56 36-94 (260)
421 KOG2444 WD40 repeat protein [G 96.9 0.0019 4.2E-08 56.5 5.4 105 321-429 69-178 (238)
422 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.74 1.6E-05 47.8 29.8 157 235-392 120-338 (527)
423 PF15390 DUF4613: Domain of un 96.8 0.12 2.5E-06 52.1 17.7 152 266-429 20-187 (671)
424 KOG2280 Vacuolar assembly/sort 96.8 0.44 9.5E-06 49.4 21.7 202 244-454 63-271 (829)
425 TIGR02604 Piru_Ver_Nterm putat 96.7 0.71 1.5E-05 45.7 24.7 152 266-420 14-204 (367)
426 PF14727 PHTB1_N: PTHB1 N-term 96.7 0.73 1.6E-05 45.8 26.4 147 276-427 36-203 (418)
427 KOG2395 Protein involved in va 96.7 0.037 8E-07 54.6 13.0 142 237-387 348-500 (644)
428 PHA03098 kelch-like protein; P 96.7 0.18 3.9E-06 52.8 19.6 187 233-431 293-514 (534)
429 KOG1002 Nucleotide excision re 96.7 0.00076 1.6E-08 65.4 1.5 47 2-49 538-589 (791)
430 TIGR03074 PQQ_membr_DH membran 96.6 1.3 2.8E-05 47.9 25.4 198 235-436 194-485 (764)
431 PF05096 Glu_cyclase_2: Glutam 96.6 0.57 1.2E-05 43.0 24.6 190 268-469 47-258 (264)
432 PF07995 GSDH: Glucose / Sorbo 96.6 0.78 1.7E-05 44.6 28.0 238 267-513 3-330 (331)
433 KOG2042 Ubiquitin fusion degra 96.6 0.0026 5.6E-08 67.6 5.0 51 3-53 873-923 (943)
434 COG5113 UFD2 Ubiquitin fusion 96.6 0.0018 3.8E-08 64.5 3.3 51 3-53 857-907 (929)
435 KOG4499 Ca2+-binding protein R 96.6 0.51 1.1E-05 41.9 19.3 212 277-498 27-263 (310)
436 PRK10115 protease 2; Provision 96.6 1.5 3.2E-05 47.3 29.6 243 225-480 128-402 (686)
437 KOG3113 Uncharacterized conser 96.5 0.022 4.7E-07 50.3 9.3 52 1-55 112-167 (293)
438 PF07995 GSDH: Glucose / Sorbo 96.5 0.91 2E-05 44.1 24.2 237 226-467 4-330 (331)
439 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.3E-07 38.5 5.3 33 223-256 11-43 (47)
440 TIGR00570 cdk7 CDK-activating 96.4 0.057 1.2E-06 50.4 11.9 50 2-52 5-60 (309)
441 PF10214 Rrn6: RNA polymerase 96.4 2.1 4.5E-05 46.9 27.0 114 358-471 146-277 (765)
442 PHA03098 kelch-like protein; P 96.4 0.37 8E-06 50.5 19.7 197 276-484 294-523 (534)
443 PF12678 zf-rbx1: RING-H2 zinc 96.4 0.0047 1E-07 44.7 3.8 41 2-42 21-73 (73)
444 KOG2444 WD40 repeat protein [G 96.3 0.013 2.7E-07 51.6 6.9 105 234-341 69-178 (238)
445 PHA02790 Kelch-like protein; P 96.3 0.38 8.3E-06 49.5 18.5 182 234-430 271-472 (480)
446 PF14870 PSII_BNR: Photosynthe 96.2 1.1 2.4E-05 42.5 27.9 233 265-512 16-255 (302)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 1.6 3.5E-05 43.4 25.1 88 228-319 6-117 (415)
448 TIGR02604 Piru_Ver_Nterm putat 96.1 1.6 3.5E-05 43.2 27.3 144 225-376 15-202 (367)
449 PF10647 Gmad1: Lipoprotein Lp 96.1 1.2 2.6E-05 41.4 21.2 152 225-380 25-188 (253)
450 PLN00033 photosystem II stabil 96.1 1.7 3.8E-05 43.1 33.8 151 360-515 241-396 (398)
451 PF12894 Apc4_WD40: Anaphase-p 96.0 0.029 6.4E-07 36.4 5.8 33 488-520 11-43 (47)
452 PF14634 zf-RING_5: zinc-RING 95.8 0.0067 1.5E-07 39.0 2.2 40 3-43 2-44 (44)
453 PF10647 Gmad1: Lipoprotein Lp 95.8 1.6 3.4E-05 40.6 23.2 146 267-421 25-187 (253)
454 COG3292 Predicted periplasmic 95.8 1.6 3.6E-05 44.0 19.1 138 378-519 353-492 (671)
455 KOG1813 Predicted E3 ubiquitin 95.7 0.0035 7.5E-08 56.8 0.7 43 2-45 243-285 (313)
456 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 2.5 5.3E-05 42.1 21.8 82 358-439 308-409 (415)
457 PF12234 Rav1p_C: RAVE protein 95.7 0.29 6.2E-06 51.0 14.3 115 400-517 30-155 (631)
458 PF12234 Rav1p_C: RAVE protein 95.6 0.36 7.9E-06 50.2 14.7 110 360-469 32-155 (631)
459 KOG4628 Predicted E3 ubiquitin 95.4 0.013 2.8E-07 55.5 3.4 53 2-55 231-287 (348)
460 COG5167 VID27 Protein involved 95.4 2.6 5.7E-05 41.9 18.7 146 276-428 478-632 (776)
461 KOG1898 Splicing factor 3b, su 95.4 2.2 4.8E-05 46.2 19.5 178 334-520 855-1050(1205)
462 PF10168 Nup88: Nuclear pore c 95.4 4.9 0.00011 43.2 24.7 79 310-389 84-181 (717)
463 COG5627 MMS21 DNA repair prote 95.3 0.0059 1.3E-07 53.1 0.7 50 2-51 191-244 (275)
464 PF05935 Arylsulfotrans: Aryls 95.3 4.2 9.1E-05 41.8 22.9 150 243-398 126-312 (477)
465 KOG1916 Nuclear protein, conta 95.1 0.049 1.1E-06 57.1 6.6 174 218-433 127-328 (1283)
466 KOG3630 Nuclear pore complex, 95.1 0.3 6.6E-06 52.8 12.3 142 359-506 102-261 (1405)
467 COG4257 Vgb Streptogramin lyas 95.1 2.7 5.9E-05 38.5 23.8 225 225-458 63-291 (353)
468 KOG4499 Ca2+-binding protein R 95.0 2.4 5.3E-05 37.8 17.9 138 266-409 109-263 (310)
469 COG3823 Glutamine cyclotransfe 95.0 1.5 3.3E-05 38.4 14.0 178 234-418 55-247 (262)
470 PF10433 MMS1_N: Mono-function 94.8 5.8 0.00013 41.2 22.3 256 232-498 219-503 (504)
471 PRK10115 protease 2; Provision 94.8 7.1 0.00015 42.2 31.3 193 266-470 127-344 (686)
472 KOG0297 TNF receptor-associate 94.8 0.014 3E-07 57.6 1.7 53 1-53 22-74 (391)
473 COG5167 VID27 Protein involved 94.8 1.7 3.6E-05 43.3 15.4 140 321-470 478-632 (776)
474 KOG3630 Nuclear pore complex, 94.7 0.4 8.7E-06 52.0 12.1 147 312-460 102-261 (1405)
475 PHA02790 Kelch-like protein; P 94.7 2 4.2E-05 44.3 17.2 184 321-520 271-472 (480)
476 PF02891 zf-MIZ: MIZ/SP-RING z 94.6 0.064 1.4E-06 35.4 4.0 44 1-44 3-50 (50)
477 COG5243 HRD1 HRD ubiquitin lig 94.6 0.043 9.3E-07 51.3 4.3 52 2-53 289-352 (491)
478 PRK13684 Ycf48-like protein; P 94.6 4.7 0.0001 39.2 25.2 147 310-463 172-323 (334)
479 PF08728 CRT10: CRT10; InterP 94.6 2.5 5.5E-05 44.7 17.5 111 401-517 102-245 (717)
480 KOG2660 Locus-specific chromos 94.5 0.009 2E-07 55.2 -0.3 47 1-47 16-62 (331)
481 PF08728 CRT10: CRT10; InterP 94.4 2.2 4.7E-05 45.2 16.5 148 235-386 49-245 (717)
482 TIGR03118 PEPCTERM_chp_1 conse 94.3 4.7 0.0001 37.7 26.1 226 226-452 25-307 (336)
483 KOG2377 Uncharacterized conser 94.3 2 4.4E-05 42.1 14.5 138 362-505 27-170 (657)
484 PF06416 DUF1076: Protein of u 94.2 0.062 1.3E-06 41.1 3.6 53 1-53 41-98 (113)
485 PF07250 Glyoxal_oxid_N: Glyox 94.2 1.8 3.9E-05 39.6 13.7 149 247-397 48-207 (243)
486 PF14727 PHTB1_N: PTHB1 N-term 94.2 6.7 0.00015 39.2 30.3 145 234-386 36-203 (418)
487 KOG1900 Nuclear pore complex, 94.1 1.3 2.8E-05 49.2 14.3 144 243-388 97-273 (1311)
488 TIGR03074 PQQ_membr_DH membran 93.9 12 0.00025 40.8 23.9 116 322-438 194-354 (764)
489 PF10168 Nup88: Nuclear pore c 93.8 2.2 4.8E-05 45.8 15.6 29 400-428 85-113 (717)
490 KOG2280 Vacuolar assembly/sort 93.7 10 0.00023 39.8 19.6 174 287-471 64-245 (829)
491 PF13449 Phytase-like: Esteras 93.7 6.6 0.00014 38.1 17.7 152 265-417 19-232 (326)
492 PLN02153 epithiospecifier prot 93.7 7.5 0.00016 38.0 22.8 186 321-510 85-325 (341)
493 PF14761 HPS3_N: Hermansky-Pud 93.7 4.4 9.6E-05 35.9 14.6 167 278-469 29-213 (215)
494 COG5222 Uncharacterized conser 93.6 0.037 8E-07 50.0 1.7 43 1-43 275-318 (427)
495 PF14781 BBS2_N: Ciliary BBSom 93.6 3.4 7.3E-05 33.6 13.7 115 228-348 3-133 (136)
496 PF10433 MMS1_N: Mono-function 93.5 11 0.00023 39.2 21.0 219 225-452 257-503 (504)
497 KOG2377 Uncharacterized conser 93.5 2.7 5.8E-05 41.3 13.9 144 271-418 28-172 (657)
498 PF14781 BBS2_N: Ciliary BBSom 93.5 2.4 5.2E-05 34.4 11.5 102 364-469 5-124 (136)
499 COG4590 ABC-type uncharacteriz 93.2 0.39 8.4E-06 46.8 7.9 167 261-432 216-390 (733)
500 PLN02153 epithiospecifier prot 93.2 9.1 0.0002 37.4 23.7 151 234-391 32-229 (341)
No 1
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.5e-112 Score=770.55 Aligned_cols=501 Identities=53% Similarity=0.820 Sum_probs=456.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccccCCCccCCCCCCCCChhHHHHHhHhhH
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEW 80 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~sip~ll~~~q~Ew 80 (526)
|+|+||||+|++|||||+||++|||||||+||.++|+||||++||++||||+||++..++||||+++|||+||++|||||
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~v~pk~~satSIPalL~~lQdEW 80 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQVRPKPPSATSIPALLKTLQDEW 80 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccccccccCCCCCccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhcCccccccccccccccCCCCCCCCC
Q 009763 81 DGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDE 160 (526)
Q Consensus 81 da~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (526)
||+|||+|+||+||+.+|||||||||||||||||||||.|||+++|++|+++..+++...+.+.+..+..+.. ..
T Consensus 81 DavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~-----~v 155 (506)
T KOG0289|consen 81 DAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVV-----GV 155 (506)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchh-----hh
Confidence 9999999999999999999999999999999999999999999999999999998875432222211111111 11
Q ss_pred ccCcCccccCCCCCHHHHHhhHHHHHHHHHhhccc--CCCCCCCChHHHhcccccceec-cccCCCCCeEEEEecCCCCE
Q 009763 161 DLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSKDV 237 (526)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~rk~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~I~~~~~s~~~~~ 237 (526)
+++... ...|+.++++..+....+.|++.||+| ++|+.++..+.+..|.+...+. +|.....+|+++...+..+.
T Consensus 156 a~ge~~--d~~g~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ 233 (506)
T KOG0289|consen 156 AAGESE--DQPGLSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATTDELSCLLQVASHTGLHSTSTPGITALDIIPSSSK 233 (506)
T ss_pred hcCCcc--ccccCCHHHHHHHHHHHHHHHHHhhhccccCCcccccHHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCc
Confidence 111111 135789999999999999999999999 8999999999999999999998 88899999999999998889
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEE
Q 009763 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317 (526)
Q Consensus 238 l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 317 (526)
++||+.|..+.++|..+++.+..++||...|+.+.|+|+...+++++.|..|+||..... .+......|..+|+.+.
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLS 310 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc---cCccccccccccceeee
Confidence 999999999999999999999999999999999999999999999999999999998775 45556678999999999
Q ss_pred EecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC
Q 009763 318 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG 397 (526)
Q Consensus 318 ~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 397 (526)
.||.|.||++++.||++.+.|++++..+...... .....+++.+|||||.+|.+|..||.|+|||+.++..+..|.+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 9999999999999999999999999998887642 2335699999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcc
Q 009763 398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADW 476 (526)
Q Consensus 398 ~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~ 476 (526)
|.++|..++|+.||+||+++++|+ |++||+|+.+.++++.... ...+.++.|++.|.||+.++.+++||.+....+.|
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 999999999999999999999999 9999999999999998865 34799999999999999999999999998888999
Q ss_pred eeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 477 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
..+..+..| .+..+++.|....+++++++.|..++++.+
T Consensus 467 ~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 999999886 678899999999999999999999999876
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-49 Score=362.74 Aligned_cols=282 Identities=29% Similarity=0.527 Sum_probs=265.2
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecC--CCEEEEEeCCCcEEEEeCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~ 296 (526)
..+-..+|..+.|+.+++.|+||+.+|.++||+..+...+.+|.||...|.++.|+|. +..|++|+.||++++|++.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3455679999999999999999999999999999999999999999999999999996 55799999999999999988
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
. ..+..+.+|...|..++|||+|++|++++.|.+.++||++++..+.... +|...|.+++|++||.++++|+
T Consensus 251 e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-----GHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 251 E---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-----GHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred C---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-----ccccccceeEecCCCceeeccC
Confidence 6 7888899999999999999999999999999999999999987766554 8889999999999999999999
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC-CC
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH-SG 454 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~-~~ 454 (526)
.|..-+|||+|++.++..+.+|..+|.++.|+|||+.|++|+.|+ ++|||+|..+.+..+..| ..-|+.+.|+| .|
T Consensus 323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEG 400 (459)
T ss_pred ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccCC
Confidence 999999999999999999999999999999999999999999998 999999999998888776 77899999998 78
Q ss_pred CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
.+|++++.| ++||.- .+|.+++.+.+| .+.|.++.+++|++++++++.|.++++|.
T Consensus 401 ~fL~TasyD~t~kiWs~----~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWST----RTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecC----CCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999 999995 889999999997 88999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-47 Score=339.13 Aligned_cols=283 Identities=24% Similarity=0.427 Sum_probs=254.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
-..+|...|.|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|++||..++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CceeeeEecccCccceEEEEEec-----CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
+ .....+.+|...|++++|.| ..++|++++.||.++|||+..+.++..+. +|..+|+|+.|--+| +|
T Consensus 190 ~--~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-----gHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 190 Q--QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-----GHTASVTCVRWGGEG-LI 261 (480)
T ss_pred C--cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-----cCccceEEEEEcCCc-eE
Confidence 5 56678899999999999977 56799999999999999999999998886 788899999998654 78
Q ss_pred EEEeCCCcEEEEECCCCceeeEe---------------------------------------------------------
Q 009763 373 GTGTSEALVKIWDVKSQANVAKF--------------------------------------------------------- 395 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~--------------------------------------------------------- 395 (526)
++|+.|++|++|+...|.....+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 99999999999987654332211
Q ss_pred ----------------------cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 396 ----------------------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 396 ----------------------~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
.+|..-|+.+.||||++++++++.|. |++||.++++.+..|..| -..|+.++|+.
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH--v~~VYqvawsa 419 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH--VAAVYQVAWSA 419 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc--cceeEEEEecc
Confidence 15777799999999999999999998 999999999999999887 78999999999
Q ss_pred CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
|.++|++|+.| ++||++ ........+.+| ...|.++.|+|||..+++|+.|..+++|.
T Consensus 420 DsRLlVS~SkDsTLKvw~V----~tkKl~~DLpGh--~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDV----RTKKLKQDLPGH--ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CccEEEEcCCCceEEEEEe----eeeeecccCCCC--CceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999 999999 445556667765 88999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.8e-45 Score=315.66 Aligned_cols=289 Identities=22% Similarity=0.369 Sum_probs=268.0
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
....++|...|.++.|+++.++|++++.||.+.|||.-+...++.+.-....|..++|+|.|+++++|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 35789999999999999999999999999999999999988888888889999999999999999999999999999998
Q ss_pred CC---CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcE
Q 009763 296 ED---GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLI 371 (526)
Q Consensus 296 ~~---~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 371 (526)
+. +.....+.+.+|++.+.|+.|.+ ...|++++.|.++.+||+++++.+..+. +|...|.++.+.| +++.
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-----GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-----GHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-----CCcccEEEEecCCCCCCe
Confidence 54 23466777899999999999986 6679999999999999999999999886 8889999999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEE
Q 009763 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 450 (526)
+++|+.|+..++||+|.+.++++|.+|...|+++.|.|+|.-+++|++|+ .++||+|..+.+..+.......+|++++|
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 99999999999999999999999999999999999999999999999998 99999999999999887776889999999
Q ss_pred cCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 451 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 451 s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
+.+|++|++|..| +.|||. -..+.+..+.+| .++|+++..+|||..|++|++|..++||.
T Consensus 282 S~SGRlLfagy~d~~c~vWDt----lk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDT----LKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccccEEEeeecCCceeEeec----cccceEEEeecc--CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999888 889986 556667777776 88999999999999999999999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-40 Score=287.46 Aligned_cols=291 Identities=24% Similarity=0.370 Sum_probs=250.3
Q ss_pred cccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCC-----CCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 218 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRP-----SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~-----~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
...+|.+.|+.++..+. .+.+++++.|.++.+|++. .|..++.+.||+..|..+..+++|++.++++.|+++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 46789999999999886 5689999999999999865 36778999999999999999999999999999999999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC--C
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--G 369 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 369 (526)
||+.++ +..+.|.+|...|.+++|++++..+++|+.|.+|++|+........... ..+...|.|+.|+|+ .
T Consensus 90 WDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~----~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 90 WDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE----DSHREWVSCVRFSPNESN 162 (315)
T ss_pred EEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec----CCCcCcEEEEEEcCCCCC
Confidence 999987 7888899999999999999999999999999999999987654443332 133679999999996 7
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEE
Q 009763 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 448 (526)
.+|++++.|++|++||+++.+....+.+|.+.++.+.+||||..+++|+.|| +.+||++.++.+..+.. ...|.++
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl 239 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSL 239 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeEeeE
Confidence 8999999999999999999999999999999999999999999999999999 99999999999777655 6789999
Q ss_pred EEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCC---CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 449 DFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL---SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
+|+|+...|+.+... |+||+++....-......+.+. .......+++|++||..|++|..|+.|++|.+.
T Consensus 240 ~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 240 CFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999988877 9999985432211111111111 112345678999999999999999999999874
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-39 Score=290.75 Aligned_cols=253 Identities=25% Similarity=0.415 Sum_probs=223.2
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
++...+.||.++|.|+.|+|+|..|++|+.|.++|+||+.+. .+..+.++|...|.|++|+|||+.|++|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 345578899999999999999999999999999999999987 78888999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-----CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCC
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-----DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 410 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (526)
+||..+|+.+..- ..+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+
T Consensus 183 lwdpktg~~~g~~----l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 183 LWDPKTGQQIGRA----LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EecCCCCCccccc----ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 9999999876554 448889999999987 5689999999999999999999999999999999999999644
Q ss_pred CCEEEEEeCCc-EEEEEcCCCccceEEecC--------------------------------------------------
Q 009763 411 GYYLATAAHDG-VKLWDLRKLKNFRSFESS-------------------------------------------------- 439 (526)
Q Consensus 411 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-------------------------------------------------- 439 (526)
.+|++|+.|+ |++|+...+.+.+.+..|
T Consensus 259 -gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 -GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred -ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 4899999998 999997665433322222
Q ss_pred ---------------------------CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcc
Q 009763 440 ---------------------------DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK 490 (526)
Q Consensus 440 ---------------------------~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~ 490 (526)
.|..-|+.+.|+||++|+++++-| +++|+- .+++.+.+|.+| -+.
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g----~tGk~lasfRGH--v~~ 411 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG----RTGKFLASFRGH--VAA 411 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC----CCcchhhhhhhc--cce
Confidence 122368899999999999999999 999997 678888999987 889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 491 ATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 491 v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
|..++|+.|.++|++|+.|.++++|++...+.
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 99999999999999999999999999987654
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.5e-38 Score=267.57 Aligned_cols=271 Identities=17% Similarity=0.317 Sum_probs=236.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEE
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA 315 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 315 (526)
-+|++++.|.+|++|...+|.+..+++...+.|+.+...|+++.|++++. -.||+||+++.+. .++.++.+|...|+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccCCceEE
Confidence 48999999999999999999999999988899999999999999999886 5799999988543 588999999999999
Q ss_pred EEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 009763 316 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 395 (526)
Q Consensus 316 l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 395 (526)
+.|+.+|+.+++||.||+++|||++...+...+ .+..+|+++..||+...|++|..+|.|++||++...+...+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 999999999999999999999999996655555 45589999999999999999999999999999988766665
Q ss_pred cC-CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCc------cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eE
Q 009763 396 DG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IR 465 (526)
Q Consensus 396 ~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~------~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~ 465 (526)
.. ...+|.++...|+|.+|+.+...| .++|++-... ++..++.+ ...+..+.+||+++||++++.| ++
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEE
Confidence 43 446899999999999999998888 9999986543 34444444 6789999999999999999999 99
Q ss_pred EEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 466 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 466 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
||+.+.. ......+.+| ...+...+||.||.||++|+.|+.+++|++..++
T Consensus 241 iwn~~~~---~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 241 IWNTDDF---FKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred EEecCCc---eeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 9998432 3444555554 7899999999999999999999999999998876
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=296.01 Aligned_cols=282 Identities=21% Similarity=0.355 Sum_probs=246.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
.+-+|..+.|.|+|+.|++|+..|.+.+|+..+......++.|..+|.++.|++++.++++|+.+|.|++|+..- .
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----n 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM----N 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch----h
Confidence 356899999999999999999999999999865555556778999999999999999999999999999998765 3
Q ss_pred eeEecccCc-cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 302 CKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 302 ~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
.+..+..|. ..|++++|+|+...|++++.||+|+|||....+....+. +|.-.|.+++|||...++++|+.|..
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-----GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-----GHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-----cCCCCcceeccCCccceeEEccCCce
Confidence 455555555 899999999999999999999999999999888777775 66778999999999999999999999
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC-CEEE
Q 009763 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYLA 458 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~-~~l~ 458 (526)
|++||.+++.++.++.+|...|..+.|++++++|++++.|. +++||+|+.+.+..+..| ...++++.|+|-. .+|.
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeecccccccccee
Confidence 99999999999999999999999999999999999999998 999999998888888877 6789999999965 5666
Q ss_pred EEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 459 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+|+.| +..|.+. ....+.. ..+.|.+.|.+++|+|-|.+|++|+.|.++++|.-..
T Consensus 324 sgg~Dgsvvh~~v~----~~~p~~~-i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVG----LEEPLGE-IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eccCCCceEEEecc----ccccccC-CCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 77777 7777763 1222222 2344688999999999999999999999999997654
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=297.35 Aligned_cols=242 Identities=25% Similarity=0.429 Sum_probs=229.0
Q ss_pred ccccCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 009763 217 PLHKTSKPGIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~--~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 294 (526)
....+|.+.|.++.|+|. +..+|+|+.||++++|++.+..++..+.+|...|..++|+|+|++|+|++.|.+-++||+
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc
Confidence 467889999999999996 569999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.++ ..+....||...|.+++|+|+|.++++|+.|..-+|||++++.++..+. +|..+|.++.|+|+|..|++
T Consensus 291 ~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-----gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 291 ETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-----GHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred ccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-----ccccceeeEeECCCceEEee
Confidence 987 5555668999999999999999999999999999999999999999886 78889999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
|+.|++++|||++....+..+.+|.+-|+.+.|+| .|++|++++.|+ ++||.-++..+++.+..| ...|.++.+++
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~ 440 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISP 440 (459)
T ss_pred cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEecc
Confidence 99999999999999999999999999999999999 799999999998 999999999999999887 78999999999
Q ss_pred CCCEEEEEeCC--eEEEE
Q 009763 453 SGSYLAVASAD--IRVYQ 468 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~ 468 (526)
+++++++++.| +++|.
T Consensus 441 d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 441 DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCceEEEeccCceeeecc
Confidence 99999999999 99885
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=265.43 Aligned_cols=290 Identities=23% Similarity=0.406 Sum_probs=238.2
Q ss_pred ccccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCC---cEEEEe-cccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 217 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG---QIVTTL-SGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
..+.+|++.|..++|+|. |.+||+|+.|+.|++|+...+ .+...+ .+|...|.+++|+|.|++|++||.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 346778899999999998 889999999999999998853 333333 379999999999999999999999999999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
|.-.. +.++++.++.||...|.|++|+++|++|++++.|+.|-||.+..+........ ...|...|..+.|||...+
T Consensus 88 w~k~~-~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV--L~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 88 WKKED-GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV--LQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred eecCC-CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee--eccccccccEEEEcCCcce
Confidence 98654 67899999999999999999999999999999999999999985544333321 2377789999999999999
Q ss_pred EEEEeCCCcEEEEECC---CCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeE
Q 009763 372 LGTGTSEALVKIWDVK---SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
|++++.|++|++|+-. ...+++++.+|.+.|.+++|++.|..|+++++|+ |+||-+... + ...+...+..
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~-~~~~sr~~Y~ 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----L-SGMHSRALYD 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----c-chhcccceEe
Confidence 9999999999999876 2367899999999999999999999999999998 999987621 1 1223567889
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEEecc--cCcceeeeeecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEeeCC
Q 009763 448 VDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d--i~v~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~l~ 518 (526)
+.|. ...|++++.| +++|.-... ...++.+... .+.|...|++++|.|. .+.|++|++||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 5677777777 888876421 1233333322 2235779999999994 7789999999999999874
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=270.18 Aligned_cols=242 Identities=24% Similarity=0.402 Sum_probs=216.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
...+|...|..+..+++|++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.+++|+.|++|++|+.-.
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g- 136 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG- 136 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-
Confidence 3567888999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CceeeeEecccC--ccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 298 GNYDCKHTLKDH--TAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 298 ~~~~~~~~~~~h--~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
.+..++..+ .+.|.|+.|+|+ ..+|++++.|+++++||+++.+....+. +|...++.+.++|||.+++
T Consensus 137 ---~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-----gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 137 ---VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-----GHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred ---cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----cccccEEEEEECCCCCEEe
Confidence 455555443 789999999997 6899999999999999999988776664 7888999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCC-------CCCee
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDS-------ETPTN 446 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~-------~~~i~ 446 (526)
+|+.||.+.+||++.++.+..+. +...|.+++|+|+.++|+.+...+|+|||+.+...+..+..... .....
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 99999999999999999988877 77899999999999999999888899999999887766654321 23457
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 447 SVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
+++|+++|..|++|..+ |++|.+
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEe
Confidence 88999999999999988 999987
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.6e-38 Score=307.28 Aligned_cols=272 Identities=28% Similarity=0.451 Sum_probs=238.5
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-------------------------------cEEEEecccccceeEE
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-------------------------------QIVTTLSGHSKKVTSV 271 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~-------------------------------~~~~~~~~h~~~V~~l 271 (526)
..+++|..|++++.++|.|..|..|++|.+... ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 357999999999999999999999999987621 1234567999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 009763 272 KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351 (526)
Q Consensus 272 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (526)
.|+|+.++|+++|.|++||+|.+.+. .++..+++|..+|+++.|+|.|-||+++|.|++-++|........+.+.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-- 532 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-- 532 (707)
T ss_pred eecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc--
Confidence 99999999999999999999999886 7888889999999999999999999999999999999999888777765
Q ss_pred CCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC
Q 009763 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 430 (526)
Q Consensus 352 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~ 430 (526)
+|...|.|+.|||+.+++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++|+.++ |.+||+.++
T Consensus 533 ---ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 533 ---GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ---ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 7788999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCc--------------------ceeeeeecCCCCC
Q 009763 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD--------------------WNCIKTFPDLSGT 488 (526)
Q Consensus 431 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~--------------------~~~~~~~~~~~~~ 488 (526)
+.+..+..| .+.|.++.|+.+|..|++|+.| +++||+...... ...+..+... .
T Consensus 610 ~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK--~ 685 (707)
T KOG0263|consen 610 SLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK--N 685 (707)
T ss_pred cchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec--C
Confidence 999998887 7899999999999999999998 999998653332 0122333332 4
Q ss_pred cceEEEEEcCCCCEEEEE
Q 009763 489 GKATCVKFGPDAKYIAVG 506 (526)
Q Consensus 489 ~~v~~~~~s~~~~~l~s~ 506 (526)
.+|.++.|......|++|
T Consensus 686 tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 686 TPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ceEEEEEEeccceeEEec
Confidence 577888887665445544
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-38 Score=280.77 Aligned_cols=284 Identities=22% Similarity=0.442 Sum_probs=265.2
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|..+|+.+-|+|+-.++++++.|++|++||..+++....++||.+.|.++.|+..|+++++++.|=.+++||..+.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~- 182 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF- 182 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
+++++.+.+|...|.++.|-|.|+++++++.|.+|+.|++.++.++.++. +|...|..+..+.||.++++++.|
T Consensus 183 -~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-----~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 183 -FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-----GHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred -HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-----CchHhEEEEEecCCeeEEEecCCC
Confidence 58888889999999999999999999999999999999999999999986 677899999999999999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCC---------------CCEEEEEeCCc-EEEEEcCCCccceEEecCCCC
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN---------------GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---------------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 442 (526)
.+|++|-+.++.+...+..|..+|-+++|.|. +.++++++.|+ |++||+.++.++.++..+ .
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh--d 334 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH--D 334 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc--c
Confidence 99999999999999999999999999999872 25899999998 999999999999999887 7
Q ss_pred CCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 443 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
..|..++|+|.|+||+++.+| ++||++ +...+...+..| ...++++.|+.+..++++|+-|..+++|.-
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl----~~~~cmk~~~ah--~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDL----KNLQCMKTLEAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEe----ccceeeeccCCC--cceeEEEecCCCCceEEeccccceeeeeec
Confidence 899999999999999999999 999999 778888888876 778999999999999999999999999963
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.3e-37 Score=274.73 Aligned_cols=293 Identities=19% Similarity=0.327 Sum_probs=258.7
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
.+..+|.+-|.|+++.|.+.+|++|+.|++++|||+.+|++..++.||-..|..+++++...+|++++.|+.|+.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
. +.++.+.+|-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+. +|..+|..+.+.|-...+++|+
T Consensus 225 n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 225 N---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----GHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred h---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----CCCCcceeEEeecCCCceEEec
Confidence 7 7888999999999999999999999999999999999999999998886 7889999999999777899999
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
.|++|++||++.++....+..|...|.+++.+|..+.+++++.|.|+-|++..+..+..+..+ ...++++....|| +
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-V 373 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccc--cceeeeeeeccCc-e
Confidence 999999999999999999999999999999999999999999999999999999988886655 6788888887665 5
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeeecC---CCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTFPD---LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+++|+++ +.+|++..+.. ++...+... ......|.+.+|...|..|++|..|.+|++|.-+...
T Consensus 374 ~~~G~dng~~~fwdwksg~n-yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHN-YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred EEEcCCceEEEEEecCcCcc-cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 5566666 88888855432 222222211 1235678999999999999999999999999876543
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=265.74 Aligned_cols=285 Identities=22% Similarity=0.373 Sum_probs=250.5
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP-SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
...+|++.|+.+.|+|+|.+||+||.|..|.+|+.. .-+....+++|.+.|..+.|.+|++.+++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 356789999999999999999999999999999954 3456778899999999999999999999999999999999999
Q ss_pred CCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
+ ++++.+++|..-|+.+.-..-| ..+.+++.||++++||+++...+..+.. ...++++.|..++..+.+|
T Consensus 122 G---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~------kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 122 G---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN------KYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred c---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc------ceeEEEEEecccccceeec
Confidence 8 8899999999999999855444 4567888999999999999888877742 3579999999999999999
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC----ccceEEecCCCC--CCeeEE
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDSE--TPTNSV 448 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~----~~~~~~~~~~~~--~~i~~i 448 (526)
+-|+.|++||++.+.....+.+|..+|+.+..+++|.++.+-+.|. +++||++-. +++..+..+.+. .....+
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 9999999999999999999999999999999999999999999998 999999853 346666666553 345678
Q ss_pred EEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 449 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
+|+|++.++.+|+.| +.+|+. .....+..+++| .+.|+++.|+|...+|.+++.|.+|++=.+
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~----~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDT----TSRRILYKLPGH--YGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eccCCCCccccccccceEEEeec----ccccEEEEcCCc--ceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999 888886 555677788886 889999999999999999999999987443
No 16
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=100.00 E-value=4.8e-39 Score=217.52 Aligned_cols=70 Identities=70% Similarity=1.022 Sum_probs=68.1
Q ss_pred CCCCChhHHHHHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhh
Q 009763 64 LTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 133 (526)
Q Consensus 64 ~~~~sip~ll~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~ 133 (526)
|+++|||+||++|||||||+|||+|+|||||+++||||++|||++|||||||||++||||++|++|++++
T Consensus 1 ~~~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 1 PTATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999998764
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.1e-36 Score=300.59 Aligned_cols=289 Identities=26% Similarity=0.472 Sum_probs=256.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
+...|...|+++.|+++|+.+++++.++.+++|+...++ ....+.+|...|.+++|+|++.++++++.|++|+|||+.
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 445567899999999999999999999999999998777 777888999999999999999999999999999999994
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
... .+++++.+|...|++++|+|+++.+++|+.|++|++||++++++...+. +|...|++++|++++++|+++
T Consensus 234 ~~~--~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-----~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 234 DDG--RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-----GHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred CCC--eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-----ccCCceEEEEECCCCCEEEEc
Confidence 332 7889999999999999999999999999999999999999999999887 777899999999999999999
Q ss_pred eCCCcEEEEECCCCc--eeeEecCCCCC--eEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCC-CCeeEEE
Q 009763 376 TSEALVKIWDVKSQA--NVAKFDGHVGA--VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE-TPTNSVD 449 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-~~i~~i~ 449 (526)
+.||.|++||+.++. +...+.++... ++++.|+|++.++++++.|+ +++||++.+.....+..+... ..+.+..
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 999999999999998 56677665554 99999999999999999997 999999999999988887543 2455666
Q ss_pred EcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEeeCC
Q 009763 450 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS--MDRNLRVFGLP 518 (526)
Q Consensus 450 ~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~l~ 518 (526)
.++.+.++++|+.| +.+|+. .....+..+.+|. ...+..+.|++..+++++++ .|+.+++|..+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~----~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDS----SSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeC----CccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 68899999999999 888887 4455566666654 67889999999999999998 78999999865
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.7e-36 Score=275.81 Aligned_cols=276 Identities=24% Similarity=0.431 Sum_probs=251.1
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
..|++++|+.+|.+||+|..||.+++|+.. |.++.++..|.++|.++.|+.+|++|++++.||++.+||..++ ...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g---~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG---TVK 311 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc---eEE
Confidence 579999999999999999999999999976 7888899999999999999999999999999999999999886 677
Q ss_pred EecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEE
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 383 (526)
..+.-|..+-..+.|- +...|++++.||.|+++.+....++.++. +|...|.++.|+|.|.+|++++.|++++|
T Consensus 312 q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLKI 385 (524)
T ss_pred EeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeee-----cccCceEEEEECCCCceEEEecCCCeeEe
Confidence 7777788887888886 56679999999999999999998888886 68889999999999999999999999999
Q ss_pred EECCCCceeeEecCCCCCeEEEEECCCC---------CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 384 WDVKSQANVAKFDGHVGAVTAISFSENG---------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 384 wd~~~~~~~~~~~~~~~~i~~l~~s~~~---------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
|..........+..|...|..+.|+|.| ..+++++.|+ |++||...+.++..+..| ..+|.+++|+|+
T Consensus 386 Ws~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~ 463 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPN 463 (524)
T ss_pred eecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCC
Confidence 9999999999999999999999999953 5788888887 999999999999998766 789999999999
Q ss_pred CCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
|+|+++|+.| +.+|.. +.....+.+.+ .+.|..++|+.+|..|..+-.||.+++.|+.
T Consensus 464 g~ylAsGs~dg~V~iws~----~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWST----KTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CcEEEecCCCCeeEeccc----cchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999 999987 66677777665 6779999999999999999999999999874
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.1e-35 Score=277.26 Aligned_cols=281 Identities=32% Similarity=0.600 Sum_probs=249.0
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
..|..+|++++|+|++++|++++.||.+.+|+..+++....+..|...+..+.|++++++|++++.||.|++|++...
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 368899999999999999999999999999999998888889999999999999999999999999999999999875
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
.....+..|...|.++.|++++.++++++.||.+.+||+.+++....+. .|...+.++.|+|++.++++++.+|
T Consensus 84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 4566677888899999999998888888889999999999888777765 4567899999999999999988899
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
.|++||+++++.+..+..|...+.++.|+|++..+++++.++ |++||++.++....+..+ ...+.++.|+|++.+++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEE
Confidence 999999999988888888888999999999998898888887 999999988877776544 56899999999999999
Q ss_pred EEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 459 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
+++.+ +++|++ ........+..+ ...+.+++|++++++|++++.||.|++|+
T Consensus 236 ~~~~~~~i~i~~~----~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDL----RTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEc----CCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88744 999997 334555556544 67899999999999999999999999996
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=285.15 Aligned_cols=289 Identities=25% Similarity=0.431 Sum_probs=249.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCC-CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVD-TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~d-g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
...|..+.|+..|++||.|+.. |.+.||++.+...+...++|...+++++++|||+++++|+.||.|+|||...+ -
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---f 383 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---F 383 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---e
Confidence 4589999999999999999864 89999999999999999999999999999999999999999999999999887 8
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC-c
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-L 380 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~ 380 (526)
|+.+|..|++.|+.+.|+..|+.+++++-||+|+.||+.......++..+ .+....|++..|.|.++++|+.|. .
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P----~p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP----EPIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC----CceeeeEEEEcCCCCEEEeeccceEE
Confidence 99999999999999999999999999999999999999999999888643 235678999999999999999887 5
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC-ccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
|.+|++.+|+.+..+.+|.++|.+++|+|.|..|++++-|. |++||+-.. ....++.. ...+..++|.|+|+-|+
T Consensus 460 IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEE
Confidence 99999999999999999999999999999999999999998 999998654 33444444 46799999999999999
Q ss_pred EEeCC--eEEEEEecccCcceee--------------eeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 459 VASAD--IRVYQVASVKADWNCI--------------KTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 459 ~~~~d--i~v~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+++-| +.+|+..........- .+-.........+.+++++||.++++||....|++|+++.+.
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99888 9999975432211000 000001123568999999999999999999999999998753
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-35 Score=265.51 Aligned_cols=290 Identities=19% Similarity=0.311 Sum_probs=244.9
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
.+...|.+.|+.+.||++|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|+.|..+++||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 466789999999999999999999999999999986543 45788999999999999999999999999999999999
Q ss_pred CCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 294 GSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 294 ~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
+.++ .+...+. +|...+.+++|.|||..+++|+.|+++..||++... ...... .....|.++++.+||..+
T Consensus 298 v~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g----vr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 298 VDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG----VRDPKVHDLAITYDGKYV 369 (519)
T ss_pred CCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc----cccceeEEEEEcCCCcEE
Confidence 9997 4444443 456889999999999999999999999999997653 333321 112468999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
++.+.|..|++|+..+......+. ...+|++++.|.+|+++++.-.+. +.+||+...+.++.+.++.....+-.-+|.
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 999999999999988765554444 456899999999999999988886 999999998888888887666666666776
Q ss_pred C-CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEeeCCCCC
Q 009763 452 H-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 452 ~-~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
. +..++++|++| ++||+. ....++..+.+| ...|++++|+| +..++|++|+||+||||.....+
T Consensus 449 g~~~~fiaSGSED~kvyIWhr----~sgkll~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~ 516 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHR----ISGKLLAVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNN 516 (519)
T ss_pred CCCcceEEecCCCceEEEEEc----cCCceeEeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCccc
Confidence 5 45899999999 888886 678889999987 78999999999 56789999999999999987653
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-34 Score=269.77 Aligned_cols=292 Identities=22% Similarity=0.323 Sum_probs=235.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec---ccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
+..|..-|.|+.|+|||.++++.+.||++.+||-.+|+.+..+. +|.+.|.++.|+||+..|++++.|.+++|||+.
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS 265 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence 45677899999999999999999999999999999999999998 899999999999999999999999999999966
Q ss_pred CCCc----------------------------------------eeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 296 EDGN----------------------------------------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 296 ~~~~----------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
+... ......+.+|...|+++..+|++.+|++|+.||.|.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN 345 (603)
T ss_pred ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence 5310 112345678999999999999999999999999999
Q ss_pred EEeCCCCeEEEE-----------eecC----------------------CCCC---------------------------
Q 009763 336 FYDLSSGICLTQ-----------VSDA----------------------GTDG--------------------------- 355 (526)
Q Consensus 336 iwd~~~~~~~~~-----------~~~~----------------------~~~~--------------------------- 355 (526)
-||..++..-.. +... +...
T Consensus 346 ~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 346 SWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred EEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 999876532111 0000 0000
Q ss_pred ----------------CCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce--eeEecCCCCCeEEEEECCCCCEEEEE
Q 009763 356 ----------------RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 356 ----------------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~ 417 (526)
......+++++|++..+++|+.||.|++|.+..+.. ...+..|.++|++++|||++.+|+++
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe
Confidence 002345889999999999999999999999987543 33456699999999999999999999
Q ss_pred eCCc-EEEEEcCCCccc-eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEE
Q 009763 418 AHDG-VKLWDLRKLKNF-RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATC 493 (526)
Q Consensus 418 ~~d~-i~iwd~~~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 493 (526)
...+ +.+||+.+.... ..+..| ...|.+++|+|+..++|+|+-| +.||.++... ..+.....| ...|+.
T Consensus 506 Da~rkvv~yd~~s~~~~~~~w~FH--takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~---~~i~iknAH--~~gVn~ 578 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTNRWAFH--TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA---KHIIIKNAH--LGGVNS 578 (603)
T ss_pred ccCCcEEEEEcccCceecceeeee--eeeEEEEEeCCCceEEEeccccceEEEEEccChh---hheEecccc--ccCcee
Confidence 9888 999999876652 222233 6889999999999999999999 9999985432 223333444 556999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 494 VKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 494 ~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
+.|- |...|++.+.|..|++|.+.
T Consensus 579 v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 579 VAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEe-cCceEEeccCcceeEEeccc
Confidence 9997 55678999999999999974
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.1e-33 Score=302.60 Aligned_cols=284 Identities=17% Similarity=0.303 Sum_probs=231.8
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----c----EEEEecccccceeEEEEec-CCCEEEEEeCCCcEEE
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----Q----IVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRV 291 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~----~----~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~i 291 (526)
.|...|++++|+|++++||+|+.||.|+||+.... . ....+. +...|.+++|++ ++.+|++++.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 37889999999999999999999999999997531 1 222333 346799999987 5789999999999999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CC
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG 369 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 369 (526)
||+.++ ..+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+.. ...+.++.|++ ++
T Consensus 560 Wd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g 630 (793)
T PLN00181 560 WDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KANICCVQFPSESG 630 (793)
T ss_pred EECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCCeEEEEEeCCCC
Confidence 999876 67778889999999999997 789999999999999999999988877742 24688999964 79
Q ss_pred cEEEEEeCCCcEEEEECCCCc-eeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC------ccceEEecCCC
Q 009763 370 LILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL------KNFRSFESSDS 441 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~------~~~~~~~~~~~ 441 (526)
.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|+ |++||++.. ..+..+..+
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-- 707 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-- 707 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--
Confidence 999999999999999998865 567788899999999997 678899999998 999999853 345555554
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCccee-------eeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 442 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC-------IKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 442 ~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
...+..+.|+|++.+|++|+.| +.+|+.......+.. +..+....+...|.+++|++++.+|++|+.||.|
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 6678999999999999999988 888886322111110 0011112235679999999999999999999999
Q ss_pred EEeeC
Q 009763 513 RVFGL 517 (526)
Q Consensus 513 ~iw~l 517 (526)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99986
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=281.44 Aligned_cols=292 Identities=16% Similarity=0.309 Sum_probs=248.6
Q ss_pred ccccceeccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCC-CcEEEEecccccceeEEEEecCCCEEEEEeCCC
Q 009763 210 YTQLASHPLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 287 (526)
Q Consensus 210 ~~~~~~~~~~~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg 287 (526)
|.+........+|..+|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+++|..|++++.|+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 334444446788999999999999 899999999999999999876 899999999999999999999999999999999
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
.|++||++++ +++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+. .|-..|..+.|-
T Consensus 281 ~lKlwDtETG---~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-----~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 281 FLKLWDTETG---QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-----RHLGAILDITFV 351 (503)
T ss_pred eeeeeccccc---eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-----hhhhheeeeEEc
Confidence 9999999998 7777664 34578999999998 889999999999999999999777665 566789999999
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCceeeEecC-CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCC---CccceEEecCCC
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRK---LKNFRSFESSDS 441 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~---~~~~~~~~~~~~ 441 (526)
++|..+++.+.|+.++||+.+.+..+..+.. +.....++..+|++.+++.-+.|. |.+|.+.. ...-+.+..+..
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 9999999999999999999998876655432 334577899999999999999998 99988643 233455666655
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEee
Q 009763 442 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 442 ~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~ 516 (526)
.+.-..+.|||||.+|++|+.+ +.+|++ ++...+..+..| .+.++.+.|+|. ...||+|+.||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdw----kt~kl~~~lkah--~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDW----KTTKLVSKLKAH--DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeec----hhhhhhhccccC--CcceEEEEecCCCcceeEecccCceeEecC
Confidence 6777889999999999999999 777777 555666677775 789999999994 45799999999999996
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-35 Score=270.17 Aligned_cols=282 Identities=21% Similarity=0.395 Sum_probs=244.5
Q ss_pred CCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCC--c--EEEEec----------ccccceeEEEEecCCCEEEEEeCC
Q 009763 222 SKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG--Q--IVTTLS----------GHSKKVTSVKFVTEGDLFLTGSAD 286 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~--~--~~~~~~----------~h~~~V~~l~~~~~~~~l~s~s~d 286 (526)
|+..|.+++|+|-.. ++++|+.|-..++|++... . ....++ ..+..|++++|+.+|.+|++|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 888999999999766 9999999999999998641 1 111111 123579999999999999999999
Q ss_pred CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
|.++||+... ..+.++..|.++|.++.|+..|+||++++.|+++.+||..++.....+.. |..+...+.|-
T Consensus 257 G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-----~s~~~lDVdW~ 327 (524)
T KOG0273|consen 257 GEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-----HSAPALDVDWQ 327 (524)
T ss_pred cEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-----ccCCccceEEe
Confidence 9999999876 57788899999999999999999999999999999999999998888863 33344667776
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCe
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 445 (526)
.+ .-|++.+.||.|+++.+....++.++.+|.+.|.++.|+|.|.+|+++++|+ ++||..........+..| ...|
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H--skei 404 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH--SKEI 404 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh--ccce
Confidence 54 4588888999999999999999999999999999999999999999999998 999999988888888776 6789
Q ss_pred eEEEEcCCC---------CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 009763 446 NSVDFDHSG---------SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 446 ~~i~~s~~~---------~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 514 (526)
..+.|+|.| ..+++++.| +++|++ ....++..|..| ..+|.+++|+|+|++||+|+.||.|++
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv----~~gv~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV----ESGVPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc----cCCceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEe
Confidence 999999864 567777777 999998 677888888776 889999999999999999999999999
Q ss_pred eeCCCCC
Q 009763 515 FGLPGND 521 (526)
Q Consensus 515 w~l~~~~ 521 (526)
|+.+.++
T Consensus 479 ws~~~~~ 485 (524)
T KOG0273|consen 479 WSTKTGK 485 (524)
T ss_pred ccccchh
Confidence 9998764
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-34 Score=266.35 Aligned_cols=295 Identities=23% Similarity=0.379 Sum_probs=244.9
Q ss_pred cccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
-..+|...|++++|-|... .++||+.|++|.+|+-.-.+...++..|..-|+|+.|+|||.+|++++.||+|.+||-.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4567888999999999766 799999999999999887788888999999999999999999999999999999999988
Q ss_pred CCceeeeEecc---cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC---------------------
Q 009763 297 DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG--------------------- 352 (526)
Q Consensus 297 ~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------------------- 352 (526)
+ +.+..+. +|.+.|.+++|+||+..|++++.|.+++|||+.+.+++.++....
T Consensus 222 g---e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 222 G---EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred c---cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 7 4555555 899999999999999999999999999999999887665543211
Q ss_pred -----------------CCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCcee-----------eEec--------
Q 009763 353 -----------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-----------AKFD-------- 396 (526)
Q Consensus 353 -----------------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-----------~~~~-------- 396 (526)
..+|...|+++..+|++.+|++|+.||.|.-||..++..- ..+.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 2468889999999999999999999999999998654321 0000
Q ss_pred --------------------------------------------------------------CCCCCeEEEEECCCCCEE
Q 009763 397 --------------------------------------------------------------GHVGAVTAISFSENGYYL 414 (526)
Q Consensus 397 --------------------------------------------------------------~~~~~i~~l~~s~~~~~l 414 (526)
.-.....+++++|++..+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 001124678899999999
Q ss_pred EEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcce
Q 009763 415 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 491 (526)
Q Consensus 415 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 491 (526)
++|+.|+ |+||.+.............+..+++.++++|++.||+++... +.+|+...... ....+. .|...|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~--FHtakI 533 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWA--FHTAKI 533 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceee--eeeeeE
Confidence 9999998 999999887765555555568999999999999999999887 88999843221 222222 258899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 492 TCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 492 ~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.+++|+|+..+||+|+.|-.|.||++...
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccCh
Confidence 99999999999999999999999999754
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=249.66 Aligned_cols=235 Identities=22% Similarity=0.450 Sum_probs=216.2
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC------cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
..-|..++|+|+|+++|+|+-|+...||++.+. ...+.+.+|++.+.|+.|.+|+ .|++++.|.++.+||+++
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET 175 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc
Confidence 356999999999999999999999999999854 4466789999999999999855 689999999999999999
Q ss_pred CCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
+ +.+..|.+|.+.|.+++++| +++.|++|+.|+..++||++.+.+++.+. +|...|+++.|+|+|.-|++|
T Consensus 176 g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-----ghesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 176 G---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-----GHESDINSVRFFPSGDAFATG 247 (343)
T ss_pred c---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-----ccccccceEEEccCCCeeeec
Confidence 8 78889999999999999999 99999999999999999999999999986 788899999999999999999
Q ss_pred eCCCcEEEEECCCCceeeEecC--CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 376 TSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
+.|++.++||+|....+..+.. ...+|++++||..|++|++|..|. +.+||.-+++.+..+..| ...|.++..+|
T Consensus 248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~ 325 (343)
T KOG0286|consen 248 SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSP 325 (343)
T ss_pred CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECC
Confidence 9999999999999988888863 345899999999999999998887 999999999988888776 78999999999
Q ss_pred CCCEEEEEeCC--eEEEE
Q 009763 453 SGSYLAVASAD--IRVYQ 468 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~ 468 (526)
+|.-+++|+.| ++||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 99999999999 99983
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7e-34 Score=255.17 Aligned_cols=282 Identities=21% Similarity=0.326 Sum_probs=240.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
+..|++.|.+++.+|+.++++||+.|..-.||+..++.....+.+|...|+++.|+.+|.+|+||+.+|.|+||...++
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg- 138 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG- 138 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-
Confidence 5578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.....+...-..|.-+.|||.+..|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.+++|..|
T Consensus 139 --~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-----Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 139 --GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-----GHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred --ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----CCCCCcccccccCCCceEEEEecC
Confidence 3444444455678889999999999999999999999999976666664 788899999999999999999999
Q ss_pred CcEEEEECCCCceeeEecC---------------------------------------------------CCCCeEEEEE
Q 009763 379 ALVKIWDVKSQANVAKFDG---------------------------------------------------HVGAVTAISF 407 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~---------------------------------------------------~~~~i~~l~~ 407 (526)
|+|++||++++.++..+.. +...+.|+.|
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 9999999999988766541 0011122222
Q ss_pred CC---CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeee
Q 009763 408 SE---NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKT 481 (526)
Q Consensus 408 s~---~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~ 481 (526)
.| .=.+.++|+-|| |.|||+...+..+.... ...|..+.|.+ ..+|++++.+ ++.|+. ..+.+...
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~t~c~~g~v~~wDa----RtG~l~~~ 363 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLLTACANGKVRQWDA----RTGQLKFT 363 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheeccC---CCceEEEEEcC-cchheeeccCceEEeeec----cccceEEE
Confidence 22 234678888898 99999988777665544 56799999999 7888888888 888887 67788888
Q ss_pred ecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 482 FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 482 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
+.+| ...|.+++++|++++++++|.|++.+||+++
T Consensus 364 y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 364 YTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EecC--chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8886 8899999999999999999999999999976
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.6e-34 Score=243.12 Aligned_cols=257 Identities=25% Similarity=0.456 Sum_probs=220.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
.+.|+.+.+.|+++.||+++ .-.|++||+.++. ++.++.+|++.|+++.|..+|+++++||.||+++|||++..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---
Confidence 45799999999999999988 5689999998864 58999999999999999999999999999999999999884
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
.+.+.+ .|..+|+++..+|+...|++|..+|.|++||+....+...+.. .....+.++.+.|||.+++.+...|.
T Consensus 116 ~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP----e~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 116 SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP----EDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC----CCCcceeeEEEcCCCcEEEEecCCcc
Confidence 555555 4789999999999999999999999999999999877776643 33468999999999999999999999
Q ss_pred EEEEECCCC------ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC-ccceEEecCCCCCCeeEEEEcC
Q 009763 381 VKIWDVKSQ------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 381 i~iwd~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
.++|++-+. .++.+++.|.+.+..+.+||++++|++++.|. ++||+.... +.-..+.. +...+..++||.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g--h~rWvWdc~FS~ 268 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG--HQRWVWDCAFSA 268 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec--CCceEEeeeecc
Confidence 999998654 45667888999999999999999999999998 999999887 33334444 367999999999
Q ss_pred CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEE
Q 009763 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
+|.||++|+.| .++|++ ...+.+..+.+| .....|++.
T Consensus 269 dg~YlvTassd~~~rlW~~----~~~k~v~qy~gh--~K~~vc~~l 308 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDL----SAGKEVRQYQGH--HKAAVCVAL 308 (311)
T ss_pred CccEEEecCCCCceeeccc----ccCceeeecCCc--ccccEEEEe
Confidence 99999999999 999998 556667777776 444555554
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4e-35 Score=287.76 Aligned_cols=207 Identities=28% Similarity=0.482 Sum_probs=197.9
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
...+|.++|..+.|+|+.++|++++.|++|++|.+.+...+-.++||..+|+++.|+|.|-+|+|||.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
.+.+.+.+|-+.|.|+.|||+.+|+++||.|.++++||+.+|..++.+. +|..+|.+++|+|+|.+|++|+.
T Consensus 526 ---~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-----GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 526 ---KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-----GHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred ---CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----CCCCceEEEEEcCCCceEeeccc
Confidence 7888899999999999999999999999999999999999999999986 78899999999999999999999
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN 432 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~ 432 (526)
||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++|+.|. |++||+.+...
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999999999999999999999998 99999976443
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=274.05 Aligned_cols=283 Identities=20% Similarity=0.387 Sum_probs=254.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC-CcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~ 301 (526)
...|+|.+|++..++|++|-..|...+|.+....+++.+.-...+|..+.|+..|++|+.|+.. |.+-||++... .
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---s 341 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---S 341 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---c
Confidence 3689999999999999999999999999999999999998888899999999999999998864 89999999886 4
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
-+...++|...+++++++|||+++++|+.||.|++||..++-+..++. .|...|+.+.|+..|+.+++.+-||+|
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-----eHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-----EHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-----cCCCceEEEEEEecCCEEEEeecCCeE
Confidence 566668999999999999999999999999999999999999999997 677899999999999999999999999
Q ss_pred EEEECCCCceeeEecCC-CCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 382 KIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 382 ~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
+.||+...+..++|... .-...|++..|.|..++.|+.|. |.+|++.+++.+..+..| .++|.+++|+|.|..|+
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH--EgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH--EGPVSGLSFSPDGSLLA 494 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC--CCcceeeEEccccCeEE
Confidence 99999999999998754 34678999999999999999997 999999999999999887 78999999999999999
Q ss_pred EEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 459 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+++.| +++|++-.. +....++.. ...+..++|+|||+-|++++.||.|.+||...+.
T Consensus 495 S~SWDkTVRiW~if~s---~~~vEtl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSS---SGTVETLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred eccccceEEEEEeecc---CceeeeEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 99999 999998432 233333332 5679999999999999999999999999987643
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-34 Score=247.55 Aligned_cols=289 Identities=19% Similarity=0.288 Sum_probs=243.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
+..+|..+++.+.++.+|++|.+++.|.+..||-..+|+.+.++.||++.|+|+...-+.+.+++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 35679999999999999999999999999999999899999999999999999999999999999999999999999998
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEEC-----CCeEEEEeCCC-------CeEEEEeecCCCCCCCCCeeEEEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSS-------GICLTQVSDAGTDGRPEGYTSAAF 365 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~ 365 (526)
+++..++ ...+|..+.|+++|++++.+.. .+.|.++|++. ..+...+. .+...++.+-|
T Consensus 85 ---k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----t~~skit~a~W 155 (327)
T KOG0643|consen 85 ---KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----TPDSKITSALW 155 (327)
T ss_pred ---cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----CCccceeeeee
Confidence 6666665 5688999999999998887754 46799999983 33344443 33478999999
Q ss_pred ccCCcEEEEEeCCCcEEEEECCCCc-eeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCC
Q 009763 366 HPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 366 ~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
.|-+..|++|..||.|.+||++++. .+...+.|...|+.++++++..++++++.|. -++||+++...++++.. ..
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t---e~ 232 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT---ER 232 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee---cc
Confidence 9999999999999999999999984 4555577999999999999999999999998 99999999999999987 67
Q ss_pred CeeEEEEcCCCCEEEEEeCC--eEEEEEecccC----------cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 009763 444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKA----------DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 511 (526)
++++.+++|....++.|+.. --|=....... ..+.+..+.+| -++|++++|+|+|+..++|+.||.
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCcccccCCCCce
Confidence 99999999998888877654 22211111001 11233444554 889999999999999999999999
Q ss_pred EEEeeCCCC
Q 009763 512 LRVFGLPGN 520 (526)
Q Consensus 512 v~iw~l~~~ 520 (526)
|++.-++.+
T Consensus 311 VR~h~Fd~~ 319 (327)
T KOG0643|consen 311 VRLHHFDSN 319 (327)
T ss_pred EEEEEeccc
Confidence 999877653
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=257.05 Aligned_cols=249 Identities=23% Similarity=0.419 Sum_probs=227.8
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
++.+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++ +...++.+|...|..+++++...|+++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 456678899999999999999999999999999999999997 78889999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEE
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 415 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 415 (526)
.||++..+.+..+. +|-+.|.|++.+|.-..|++|+.|.++++||+|+...+..+.+|..+|..+.+.|-.-.++
T Consensus 219 CwDLe~nkvIR~Yh-----GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH-----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhc-----cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 99999998888775 7888999999999999999999999999999999999999999999999999999888899
Q ss_pred EEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEE
Q 009763 416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATC 493 (526)
Q Consensus 416 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 493 (526)
+|+.|+ |++||++.++....+..+ ...+.+++.+|....+++++.| ++-|++ .....+..+.+| .+.|++
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~w~~----p~g~f~~nlsgh--~~iint 365 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQWKL----PEGEFLQNLSGH--NAIINT 365 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecc--cceeeEEecCCchhhhhccCCccceeccC----Cccchhhccccc--cceeee
Confidence 999998 999999999998888766 6789999999999999999998 999998 455566666665 788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 494 VKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 494 ~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
++...|+ ++++|++.|.+.+||..++-
T Consensus 366 l~~nsD~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 366 LSVNSDG-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred eeeccCc-eEEEcCCceEEEEEecCcCc
Confidence 9998775 68899999999999997753
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=236.64 Aligned_cols=280 Identities=17% Similarity=0.283 Sum_probs=241.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
+...|+++|.++.|+-+|++.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+.++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC--eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
+..+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. ++++.+. .....|.++.+. +..|++|
T Consensus 92 ---kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-----ea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 92 ---KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-----EAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ---eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-----hhcCceeEEEec--ccEEEee
Confidence 889999999999999999999999999999999999998765 3444443 223567777775 5679999
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
+.||+++.||+|.|.....+-+ .+|++++|+++++..+.++.++ +++.|-.+++.+..+..+.....-...+++...
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred ccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 9999999999999987766654 4899999999999999999998 999999999999999998776667788899999
Q ss_pred CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcc-eEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK-ATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
..+++|++| +.+|++ .+...+..+..+ ... |+++.++|.-.-|+++. ++.+.+|-
T Consensus 240 thV~sgSEDG~Vy~wdL----vd~~~~sk~~~~--~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDL----VDETQISKLSVV--STVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eeEEeccCCceEEEEEe----ccceeeeeeccC--CceeEEeeecccCccceeEec-CCceecee
Confidence 999999999 666776 445556666554 334 89999999877777775 45556664
No 35
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=255.26 Aligned_cols=284 Identities=22% Similarity=0.353 Sum_probs=244.0
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 294 (526)
.....|.+.+..+.|-++...|++|+.|..|++|+...++ .+.++.|..+.|+++.|.+++..+++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3566789999999999999999999999999999987766 67788899999999999999999999999999999999
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
... +...++.+|++.|+++.|......+++|+.|.+|++||+....+..++... +.+..++.+ +..+++
T Consensus 249 d~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~------S~cnDI~~~--~~~~~S 317 (459)
T KOG0288|consen 249 DSL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG------SQCNDIVCS--ISDVIS 317 (459)
T ss_pred cch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc------ccccceEec--ceeeee
Confidence 876 788899999999999999876667999999999999999998888777532 234445544 667999
Q ss_pred EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC--CCCeeEEEEc
Q 009763 375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFD 451 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~s 451 (526)
|..|+.|++||.++.........+ +.|+++..+++|..|.+++.|. +.++|+++......+..... ....+.+.|+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred cccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 999999999999999999888866 4999999999999999988887 99999999988887776432 3458899999
Q ss_pred CCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 452 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
|++.|+++|+.| +.||++ ...++...+........|++++|+|.|..|++++.++.+.+|.
T Consensus 397 pd~~YvaAGS~dgsv~iW~v----~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSV----FTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCceeeeccCCCcEEEEEc----cCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999 888887 4445555554443344799999999999999999999999994
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=246.58 Aligned_cols=289 Identities=20% Similarity=0.369 Sum_probs=250.1
Q ss_pred ccCCCCCeEEEEecC---CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 219 HKTSKPGIVSLDIHY---SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~---~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
-.+|..+|..++|+| +|-+|++++.||.-.+-+-++|.-+.+|.||.+.|++.....+...-++++.|-+-+|||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 357889999999986 78899999999999999999999999999999999999998888889999999999999988
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
++ ..+..|. |...|..++|+.+.++|++|+.++.+++||++..+..-.- ..+|...|..+.|....+.|+++
T Consensus 90 tg---delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E----~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 90 TG---DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE----ISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hh---hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh----hcCCCCcceeEEEeccCceEEee
Confidence 87 5566664 8889999999999999999999999999999876532221 23788899999999988888888
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
+.|++|++||.++++.++++. ...+|+++.++++|.+|.++...+|.+||..+...++.+.. ...|.+..++|+..
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---PCNVESASLHPKKE 237 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC---ccccccccccCCCc
Confidence 999999999999999999987 56789999999999999998877899999999999988877 57899999999999
Q ss_pred EEEEEeCCeEEEEEecccCcceeeeee-cCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCC
Q 009763 456 YLAVASADIRVYQVASVKADWNCIKTF-PDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 523 (526)
Q Consensus 456 ~l~~~~~di~v~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~ 523 (526)
++++|++|..+|.++- .+...+..+ .+ |.++|.|+.|+|||..-++|+.||+|++|.....++.
T Consensus 238 ~fVaGged~~~~kfDy--~TgeEi~~~nkg--h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDY--NTGEEIGSYNKG--HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEec--cCCceeeecccC--CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999954444432 334444444 44 4889999999999999999999999999998766543
No 37
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-33 Score=245.50 Aligned_cols=290 Identities=24% Similarity=0.425 Sum_probs=245.5
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe---
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ--- 293 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd--- 293 (526)
..+.+|+++|+.++......++.+++.|.+.+||.+++|.++.++.||.+.|+++.|++.+.++++++.|++-.||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 35778999999999988888999999999999999999999999999999999999999999999999999999996
Q ss_pred ---CCC-----------------------------C--CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 009763 294 ---GSE-----------------------------D--GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (526)
Q Consensus 294 ---~~~-----------------------------~--~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (526)
+.. . ....++..+.+|.+.|.+..|...|+.+++++.|.+..+||+
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV 301 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV 301 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence 110 0 012345567889999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEe
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
+++..+..+. +|....+.++-||..+++++.+.|.+.++||++.. ..+..|++|...|+++.|.. +..+++|+
T Consensus 302 Etge~v~~Lt-----GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-dd~vVSgS 375 (481)
T KOG0300|consen 302 ETGEVVNILT-----GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-DDRVVSGS 375 (481)
T ss_pred ccCceecccc-----CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-CCceeecC
Confidence 9999988876 78889999999999999999999999999999854 45778999999999999985 46788889
Q ss_pred CCc-EEEEEcCCCc-cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec---CCCCCcce
Q 009763 419 HDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP---DLSGTGKA 491 (526)
Q Consensus 419 ~d~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~---~~~~~~~v 491 (526)
+|. |++||+++.+ ++.++.. ..+++.++.+..+..++.-..+ +++|+++. ..+..++ ...|...|
T Consensus 376 DDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-----~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-----NRLARLPRTSRQGHRRMV 447 (481)
T ss_pred CCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCC-----CccccCCcccccccceee
Confidence 887 9999999865 4556655 5789999999988899988877 99999832 2222222 12347789
Q ss_pred EEEEEcCCC--CEEEEEeCCCcEEEeeCCCC
Q 009763 492 TCVKFGPDA--KYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 492 ~~~~~s~~~--~~l~s~~~dg~v~iw~l~~~ 520 (526)
+|++|..+. .-|++++.|..+.=|.+...
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEeccc
Confidence 999997643 34889999999999998654
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-33 Score=266.45 Aligned_cols=280 Identities=21% Similarity=0.338 Sum_probs=252.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
+.+.|.+++|+|...+++++-.+|.|.|||.++...++.+.-..-+|.+..|-...+++++|+.|..|+||+.++. +
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~---e 88 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG---E 88 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc---e
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCC
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEA 379 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg 379 (526)
.+..|..|.+.|.+++.||...+++++|.|-+|++||.+.+-. .+++. +|..-|.+++|+| |.+.+++++-|+
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-----GH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-----GHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-----CcceEEEEEEecCCCccceeeeeccc
Confidence 8899999999999999999999999999999999999987643 33443 8888999999999 889999999999
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCC--CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENG--YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~--~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
+|++|.+.+..+..++++|...|+|+.|-+.| .+|++|++|. |+|||..+..++.++..| ...|..+.|+|.-.+
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVFFHPELPI 241 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEEecCCCcE
Confidence 99999999999999999999999999999855 5999999998 999999999999999887 678999999999999
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
+++|+.| ++||+- .+.+...++.-. .+++.|++-.+.++.++.|.+.|.|. ..+-
T Consensus 242 iisgsEDGTvriWhs----~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~-v~lg 298 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNS----KTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVT-VKLG 298 (794)
T ss_pred EEEecCCccEEEecC----cceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEE-EEcc
Confidence 9999999 999986 556666655543 67899999988888888888777663 3443
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=257.94 Aligned_cols=277 Identities=21% Similarity=0.416 Sum_probs=238.1
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
...+|+|+.+. ...+++|..|++|++||..+..+...+.||++.|.|+.| +.+.+++|+.|.+|+|||++++ +
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg---e 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG---E 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC---c
Confidence 35689999875 678999999999999999999999999999999999999 6679999999999999999998 8
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
++.++.+|...|..+.|+ +.++++++.|.++.+||+.....+.... ...+|...|+.+.|+ .+++++++.|.+|
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr--VLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH--HHhhhhhheeeeccc--cceEEEecCCceE
Confidence 889999999999999996 7899999999999999998765322111 134778889999986 4599999999999
Q ss_pred EEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
++|++.+++.+.++.+|...|-|+.+ +|+++++|+.|. |++||+..+.+++.+++| ..-|.++.|+ .+.+++|
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd--~krIVSG 416 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD--NKRIVSG 416 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--Cceeeec
Confidence 99999999999999999999999998 789999999997 999999999999999887 6789999995 6788999
Q ss_pred eCC--eEEEEEecccCcce-----eeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 461 SAD--IRVYQVASVKADWN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 461 ~~d--i~v~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+.| ++||++........ ++..+. .|.+.|..+.| |...+++++.|.+|.|||+..+.
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhh--hccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence 998 99999965433222 222333 35889999999 56779999999999999997654
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4e-34 Score=265.52 Aligned_cols=256 Identities=25% Similarity=0.494 Sum_probs=226.1
Q ss_pred CcEEEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCe
Q 009763 255 GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 333 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~ 333 (526)
.+.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++-..+ .+++++.+|..+|..++|+++|..|++++.|+.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 356788999999999999999 89999999999999999998744 899999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-cEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCC
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 412 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (526)
+++||+++|+++..+... ..++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|-+.|..+.|-++|.
T Consensus 282 lKlwDtETG~~~~~f~~~------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLD------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEecC------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence 999999999999998642 578999999988 9999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCc
Q 009763 413 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTG 489 (526)
Q Consensus 413 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~ 489 (526)
.++++++++ ++||+.+..-.+..+.... .....++..+|++.++++-+.+ +.+|.... .-..+..+.|.+|.-.+
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-PFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEeccc-ccccCHhhhhcceeccC
Confidence 999999998 9999999887766554432 4577889999999999999888 66665422 12234456778887778
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 490 KATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 490 ~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.-..+.|||||.+|++|+.||.+.+||..+.
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 8899999999999999999999999998753
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=268.11 Aligned_cols=291 Identities=22% Similarity=0.410 Sum_probs=239.3
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC--EEEEEeCCCcEEEEeCCCCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~~ 298 (526)
.|.++|.-++|+|.+.++++|+.||.++|||+..+...+.|+||.+.|.++.|+|+-. .|++|..|+++++||+....
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence 3889999999999999999999999999999999999999999999999999999655 58999999999999998754
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC-----------------------CCCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-----------------------GTDG 355 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~ 355 (526)
.++..+..|.+.|+++.|.+++..++++|.|..+.+||+.+.+....+... +..+
T Consensus 183 --tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 183 --TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred --hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 367888899999999999999999999999999999998654332222100 0000
Q ss_pred C---------C---------------------------------------------------------------------
Q 009763 356 R---------P--------------------------------------------------------------------- 357 (526)
Q Consensus 356 ~---------~--------------------------------------------------------------------- 357 (526)
. .
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 0 0
Q ss_pred -------------------------CCeeEEEEccCCcEEEEEeCCCcEEEEECCCCcee--------------------
Q 009763 358 -------------------------EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-------------------- 392 (526)
Q Consensus 358 -------------------------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------------------- 392 (526)
..|.++....+|.+|++|+.|.++++|.++++...
T Consensus 341 VATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred EEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec
Confidence 11223333344556777777777777755221000
Q ss_pred ------------------------------eE------ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceE
Q 009763 393 ------------------------------AK------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS 435 (526)
Q Consensus 393 ------------------------------~~------~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~ 435 (526)
.. ...|...|++++++|+..++++|+.|. .+||++........
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 00 014777899999999999999999998 99999998888888
Q ss_pred EecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 009763 436 FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLR 513 (526)
Q Consensus 436 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 513 (526)
+..| ...+.++.|+|..+.+++++.| ++||.+ .++.++++|.+| ...|..+.|-.+|..|++++.||-|+
T Consensus 501 LsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i----s~fSClkT~eGH--~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 501 LSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSI----STFSCLKTFEGH--TSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeCC--ccceEEEEeccccceeEeccCCceEEEEEe----ccceeeeeecCc--cceeEeeeeeeCCcEEEeccCCCcEE
Confidence 8877 7799999999999999999999 999999 789999999997 88999999999999999999999999
Q ss_pred EeeCCCCC
Q 009763 514 VFGLPGND 521 (526)
Q Consensus 514 iw~l~~~~ 521 (526)
+|++..++
T Consensus 573 lWnikt~e 580 (775)
T KOG0319|consen 573 LWNIKTNE 580 (775)
T ss_pred EEeccchh
Confidence 99998764
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.7e-32 Score=233.03 Aligned_cols=282 Identities=22% Similarity=0.352 Sum_probs=240.0
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE--EecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~--~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~ 295 (526)
...|...|.+++|+.+|..+++|+.|+++.+|++...+... ...+|.+.|-.++|+| +.+.|++++.|.+|++||+.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 34566789999999999999999999999999998765544 4568999999999998 66789999999999999998
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
.+ ++...+....+ =.-+.|+|+|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++..
T Consensus 96 ~~---k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~------~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 96 SG---KCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF------KFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred cC---cEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc------cceeeeeeecCCCCEEEEe
Confidence 87 66666654333 34678999999999999999999999998877766532 3468889999888888888
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
...|.|.|.....-+++..++.|.....|+.|+|+|++|++|+.|. +.+||+...-+.+.+... .-+|+.+.|+.+|
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~dg 243 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSHDG 243 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--cCceEEEEeccCc
Confidence 8889999999999999999999999999999999999999999998 999999999999988776 7899999999999
Q ss_pred CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC---------CcEEEeeCCC
Q 009763 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD---------RNLRVFGLPG 519 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~v~iw~l~~ 519 (526)
++||+|++| |-|=++ .++..+..+. +.++...++|+|...+||-+++| |.|++|.+++
T Consensus 244 ~~lASaSEDh~IDIA~v----etGd~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEV----ETGDRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ceeeccCccceEEeEec----ccCCeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999999 666666 3344444443 36788999999999999887754 6889988764
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=266.68 Aligned_cols=287 Identities=23% Similarity=0.395 Sum_probs=250.1
Q ss_pred CCCCeEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC-Cc
Q 009763 222 SKPGIVSLDI-HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-GN 299 (526)
Q Consensus 222 ~~~~I~~~~~-s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~ 299 (526)
..+.|..++| .|..+++|+++..+.+++|+..+..+. .+.||+..|.++....+|.+|+||+.|.++++|.++.+ ..
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 3467888886 467789999999999999998876665 88999999999996667889999999999999988443 22
Q ss_pred eeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEE---Eee-cCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLT---QVS-DAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~---~~~-~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
..++....+|...|.+++++..+ .+|+++|.|+++++|++...+... .+. ......|...|+|++++|+..++++
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 35666678999999999997654 589999999999999998722111 110 0112367889999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
|+.|.+.+||++........+.+|...|.++.|+|+.+.++++|.|+ |+||.+.+..+++++.+| ...|..+.|-.+
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH--~~aVlra~F~~~ 558 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH--TSAVLRASFIRN 558 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc--cceeEeeeeeeC
Confidence 99999999999999999999999999999999999999999999998 999999999999999987 789999999999
Q ss_pred CCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
|..|++++.| +++|++ ++..+..++..| ...|.+++.++...++++|+.||.|.+|.=
T Consensus 559 ~~qliS~~adGliKlWni----kt~eC~~tlD~H--~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 559 GKQLISAGADGLIKLWNI----KTNECEMTLDAH--NDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred CcEEEeccCCCcEEEEec----cchhhhhhhhhc--cceeEEEeecCccceeEecCCCeEEEEeec
Confidence 9999999998 999999 778899999887 889999999999999999999999999963
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-34 Score=259.81 Aligned_cols=242 Identities=21% Similarity=0.372 Sum_probs=216.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
+...|.+.|.++.|++++.++++|..+|.|++|+..- ..+..+..| ...|++++|+|+...|++++.||+|+|||...
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 5678999999999999999999999999999999764 445555555 48999999999999999999999999999877
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
. .....+.+|.-.|.+++|||....++++|.|..|++||.+++.++.++. .|...|..+.|++++++|++++
T Consensus 212 ~---kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-----~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 212 P---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-----GHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred C---chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----hccceEEEEEEcCCCCeeEEcc
Confidence 5 5556678999999999999999999999999999999999999998886 7788999999999999999999
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
.|..+++||+++.+.+..+++|...++++.|+| +..+|.+|+.|+ |..|.+...+++..+.. .|...|.+++|+|-|
T Consensus 284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLG 362 (464)
T ss_pred CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccc
Confidence 999999999999999999999999999999999 567888888888 99999886566555543 347899999999999
Q ss_pred CEEEEEeCC--eEEEEE
Q 009763 455 SYLAVASAD--IRVYQV 469 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~ 469 (526)
.+|++|+.| +++|.-
T Consensus 363 hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 363 HILATGSNDRTVRFWTR 379 (464)
T ss_pred eeEeecCCCcceeeecc
Confidence 999999998 999975
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=269.15 Aligned_cols=284 Identities=23% Similarity=0.374 Sum_probs=250.5
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
...|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..++|+|++.+|++|+.|-.|+||+..+. +|
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rc 85 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RC 85 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---ee
Confidence 457889999999999999999999999999999999999999999999999999999999999999999999886 89
Q ss_pred eEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEE
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 382 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 382 (526)
+.++.+|-+.|..+.||+.-..++++|.|.+|+||+..+.+++..+. +|...|.|..|||...++++++-|.+|+
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-----GHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-----GHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-----cCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999987 7888999999999999999999999999
Q ss_pred EEECCCCc-----------------------------eeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc
Q 009763 383 IWDVKSQA-----------------------------NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN 432 (526)
Q Consensus 383 iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~ 432 (526)
+||+..-+ ....+++|...|+-++|+|.-.++++|++|. |++|.+...+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99984210 1234578999999999999999999999998 99999887665
Q ss_pred ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 433 ~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
...-...+|...|.++.|+|...++++.+.| ++||++ .....+.+|... +++...++-+|..+++++| .|+
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm----~kRt~v~tfrre--ndRFW~laahP~lNLfAAg-HDs 313 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM----TKRTSVQTFRRE--NDRFWILAAHPELNLFAAG-HDS 313 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec----ccccceeeeecc--CCeEEEEEecCCcceeeee-cCC
Confidence 4444444558899999999999999999999 999999 455667777553 6788999999999877766 566
Q ss_pred cEEEeeCCCCC
Q 009763 511 NLRVFGLPGND 521 (526)
Q Consensus 511 ~v~iw~l~~~~ 521 (526)
-+.||.++...
T Consensus 314 Gm~VFkleREr 324 (1202)
T KOG0292|consen 314 GMIVFKLERER 324 (1202)
T ss_pred ceEEEEEcccC
Confidence 67788887543
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=240.46 Aligned_cols=293 Identities=18% Similarity=0.356 Sum_probs=243.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------------------CcEEEEecccccceeEEEEecCCCE
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGDL 279 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~------------------~~~~~~~~~h~~~V~~l~~~~~~~~ 279 (526)
....|++++.+.+|++||.++|+|+.|..|+|+|++. ...++++-.|...|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 3567899999999999999999999999999999751 1357788899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 009763 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (526)
|++|+.|++|++||+......+..+.+ ....+|.++.|||.|.+++.|..-.++++||+++.++..... ....|...
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~a 263 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGA 263 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC--cccccccc
Confidence 999999999999999764322222233 345689999999999999999999999999999998876654 25578899
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC-CC-CCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEE
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HV-GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~-~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 436 (526)
|+++.+++.|++.++|+.||.|++||--+++++.++.. |. ..|.+..|..||+++++++.|. +++|.+.+++++..+
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 99999999999999999999999999999999988853 44 4799999999999999999998 999999999999998
Q ss_pred ecCCC---CCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 437 ESSDS---ETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 437 ~~~~~---~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
...+. ..--+...|+....|++.-.+. +.-|+... . .. ..+....|++.+..+.-||.+.-+++|+.|.
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt--a--dr-~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART--A--DR-VALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc--h--hh-hhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 87532 2223567788888898876655 66666522 1 11 2222334689999999999999999999999
Q ss_pred cEEEeeCC
Q 009763 511 NLRVFGLP 518 (526)
Q Consensus 511 ~v~iw~l~ 518 (526)
..++|--.
T Consensus 419 raRFWyrr 426 (430)
T KOG0640|consen 419 RARFWYRR 426 (430)
T ss_pred eeeeeeec
Confidence 99999643
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-32 Score=261.60 Aligned_cols=287 Identities=18% Similarity=0.322 Sum_probs=251.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|+..|.++++|.+...+++|+ .+.+++|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~- 444 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA- 444 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh-
Confidence 457899999999998888777775 679999999999999998743 7999999999999999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC-----CeE--EEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GIC--LTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-----~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
..+.+...|.+.|+.++.+|++..+++||.|.+|++||..- +.. +..+.....-.....|.|+.++|||.+
T Consensus 445 --~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 445 --SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred --hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 55666779999999999999999999999999999999742 111 111111111133468999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEE
Q 009763 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 450 (526)
|+++--|++|+||-+.+-+....+-||.-||.|+..+|+++.+++|+.|. |++|-+.-|.+.+.+-.| ...|.++.|
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH--dDSvm~V~F 600 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH--DDSVMSVQF 600 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc--cCceeEEEE
Confidence 99999999999999999999899999999999999999999999999998 999999999999998777 789999999
Q ss_pred cCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 451 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 451 s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
-|....+++++.| ++-||- ..+..+..+.+| ...|.|++.+|+|.++++++.|.+|++|.-..
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg----~kFe~iq~L~~H--~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDG----EKFEEIQKLDGH--HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cccceeEEEecCcceEEeech----hhhhhheeeccc--hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999 888875 668888888887 88999999999999999999999999998765
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=246.43 Aligned_cols=295 Identities=19% Similarity=0.305 Sum_probs=247.4
Q ss_pred cccccceeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe--------cccccceeEEEEecCCCEE
Q 009763 209 RYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL--------SGHSKKVTSVKFVTEGDLF 280 (526)
Q Consensus 209 ~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~--------~~h~~~V~~l~~~~~~~~l 280 (526)
+|.......+.-+.++.+-|..|+|||++|++|+.||.|-+||..+|+....+ .-+..+|.|+.|+.|...|
T Consensus 199 ~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 199 RYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred hchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 34433334455556778999999999999999999999999999998765433 3578899999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 009763 281 LTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (526)
++|+.||.|+||.+.++ .|++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..+. +|.+.
T Consensus 279 AsGsqDGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-----GHsSy 350 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-----GHSSY 350 (508)
T ss_pred hccCcCCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-----Ccccc
Confidence 99999999999999998 7888887 899999999999999999999999999999999999998886 78889
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC--CCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCCCccceE
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRS 435 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~ 435 (526)
|+...|.+||..+++++.||+|++|+.++.+++.+|+. ...+|+++-.-| +...++++.... |.|.++. ++.++.
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 99999999999999999999999999999999999864 345788888777 456677776665 9888875 566666
Q ss_pred EecCCC-CCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 009763 436 FESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 436 ~~~~~~-~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 514 (526)
+..... .+...+...+|.|.++++.+.|..+|-+.. ..+....++..| ...+..++-+|..+.|++-+.||.+++
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~--~sG~LE~tl~Vh--EkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV--LSGKLERTLPVH--EKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe--ecCceeeeeecc--cccccccccCcccchhhhhcccchhhh
Confidence 655432 456677889999999999999955555433 334455566665 678889999999999999999999999
Q ss_pred ee
Q 009763 515 FG 516 (526)
Q Consensus 515 w~ 516 (526)
|.
T Consensus 506 Wk 507 (508)
T KOG0275|consen 506 WK 507 (508)
T ss_pred cC
Confidence 95
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-32 Score=237.78 Aligned_cols=254 Identities=22% Similarity=0.414 Sum_probs=223.2
Q ss_pred EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEE
Q 009763 257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (526)
Q Consensus 257 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (526)
++..+.+|.+.|..+.|+|+|.+|++|+.|..|.+|++.... +....+++|.+.|..+.|.++++.+++++.|.+++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 345677999999999999999999999999999999976543 556677899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-cEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEE
Q 009763 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 415 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 415 (526)
||.++|+....+. +|..-|+.+.-..-| .++.+|+.||++++||+|+...++++. ....++++.|...+..+.
T Consensus 117 wD~~tG~~~rk~k-----~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-----GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred Eecccceeeehhc-----cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccccee
Confidence 9999999998886 666778888744433 677788999999999999998888876 456899999999999999
Q ss_pred EEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcc--
Q 009763 416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK-- 490 (526)
Q Consensus 416 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~-- 490 (526)
+|+-|+ |++||+|+......+..+ ..+|+.+..+++|.++.+-+.| +++|++........++..+.++.|.-.
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred eccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 999998 999999999999988877 7899999999999999998888 999999877777788888888766544
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 491 ATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 491 v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
...++|+|++..+.+|+.|..+++||....
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccc
Confidence 456789999999999999999999998763
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=248.89 Aligned_cols=294 Identities=19% Similarity=0.332 Sum_probs=243.1
Q ss_pred cccccceeccccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCC
Q 009763 209 RYTQLASHPLHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 287 (526)
Q Consensus 209 ~~~~~~~~~~~~~~~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg 287 (526)
-|.+....+.++.| +.|++++|+|... -+|+.+ .-.+.+|+..+.....++......|.+++|..||.+|++|...|
T Consensus 13 ~w~~~~~~~~~ke~-~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 13 YWRQETFPPVHKEH-NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred hhhhhccccccccc-CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcC
Confidence 34444444455554 7899999999654 344444 45799999988887777777788999999999999999999999
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
.|+|||..+. ..++.+.+|..+|..+.|+|++ ..+++|+.|+.+++||+.+......+ .+|...|.|.+|+
T Consensus 91 ~V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 91 HVKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDIS 162 (487)
T ss_pred cEEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeeccc
Confidence 9999996553 5677888999999999999965 56778888999999999998853333 3888999999999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCC
Q 009763 367 P-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETP 444 (526)
Q Consensus 367 ~-~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~ 444 (526)
| ++.++++|+.||.|++||++.. ..+.++. |..+|..+.|-|.|..+++++...|++||+.++........ .|...
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~-~H~Kt 240 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMF-NHNKT 240 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhh-cccce
Confidence 9 6779999999999999999987 6666766 88899999999999999999988899999996654433332 13678
Q ss_pred eeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 445 TNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|+|+.+..++..|++|+-| ++||++ .+++.+..+.- .++|.+++.+|+++.++.|..||.+.+-+....+
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~----t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDT----TNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEc----cceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 9999999999999999999 999997 67888887765 7899999999999999999999998777554433
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-32 Score=228.68 Aligned_cols=247 Identities=20% Similarity=0.339 Sum_probs=222.5
Q ss_pred EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEE
Q 009763 257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (526)
Q Consensus 257 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (526)
....+..|.++|..+.|+-+|++.++++.|.+|++|+...+ .+++++.+|...|..++.+.++..|++|+.|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 45677889999999999999999999999999999998876 899999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC--ceeeEecCCCCCeEEEEECCCCCEE
Q 009763 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYL 414 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l 414 (526)
||+++|+....+. +|...|+.+.|+.+...+++|+.|..+++||.|+. ++++.+......|.++.. .+..+
T Consensus 86 wDV~TGkv~Rr~r-----gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heI 158 (307)
T KOG0316|consen 86 WDVNTGKVDRRFR-----GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEI 158 (307)
T ss_pred EEcccCeeeeecc-----cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEE
Confidence 9999999999987 78889999999999999999999999999999865 688888888889999998 56789
Q ss_pred EEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcce
Q 009763 415 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 491 (526)
Q Consensus 415 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 491 (526)
++|+.|| ++.||+|.++....+- ..+|+++.|+++++..++++-+ +++.+- .+.+.+..+.+|.....-
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk----~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDK----ETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeeccc----chhHHHHHhcccccceee
Confidence 9999999 9999999998766554 4589999999999999999988 888774 667888889888766667
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 492 TCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 492 ~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
...+++.....+++|+.||.|++||+-...
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEeccce
Confidence 778888888899999999999999997654
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=245.02 Aligned_cols=241 Identities=27% Similarity=0.500 Sum_probs=223.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
-.++|.+++..++|+..|+++++++.|=.+.+||..+ .++++.+.+|...|.+++|-|.|+++++++.|.+|+.|++.+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 4678999999999999999999999999999999876 566778889999999999999999999999999999999999
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC--------
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-------- 368 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------- 368 (526)
+ .++.++.+|...|..+..+.||.++++++.|.++++|-+.++++...+. .|..+|.|++|.|.
T Consensus 225 g---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 225 G---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-----EHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred c---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-----ccccceEEEEecccccCcchhh
Confidence 8 8999999999999999999999999999999999999999998777665 66678999998763
Q ss_pred -------CcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC
Q 009763 369 -------GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD 440 (526)
Q Consensus 369 -------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 440 (526)
+.++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+|+ +++||+++.++.+.+..+
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah- 375 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH- 375 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-
Confidence 24899999999999999999999999999999999999999999999999998 999999999999999876
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC--eEEEE
Q 009763 441 SETPTNSVDFDHSGSYLAVASAD--IRVYQ 468 (526)
Q Consensus 441 ~~~~i~~i~~s~~~~~l~~~~~d--i~v~~ 468 (526)
..-++++.|+.+..|+++|+-+ +++|.
T Consensus 376 -~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 376 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -cceeEEEecCCCCceEEeccccceeeeee
Confidence 6789999999999999999998 88886
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.3e-31 Score=265.14 Aligned_cols=253 Identities=29% Similarity=0.516 Sum_probs=217.4
Q ss_pred EEeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEE
Q 009763 259 TTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 337 (526)
Q Consensus 259 ~~~~~h-~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (526)
..+.+| ...|.++.|+++|+.+++++.|+.+++|+...... .....+.+|...|.+++|+|++.++++++.|+++++|
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 344443 78899999999999999999999999999965421 2566668999999999999999999999999999999
Q ss_pred eC-CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEE
Q 009763 338 DL-SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT 416 (526)
Q Consensus 338 d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 416 (526)
|+ ..+..+.++. +|...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|.+.|++++|++++.+|++
T Consensus 231 d~~~~~~~~~~l~-----gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 231 DLKDDGRNLKTLK-----GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred eccCCCeEEEEec-----CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 99 5557777776 78889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCc-EEEEEcCCCc--cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCC-cc
Q 009763 417 AAHDG-VKLWDLRKLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT-GK 490 (526)
Q Consensus 417 ~~~d~-i~iwd~~~~~--~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~-~~ 490 (526)
++.|+ |++||+.++. +...+.......+++++.|+|++.++++++.| +++|++ ........+.+|... ..
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l----~~~~~~~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDL----RSGKSVGTYTGHSNLVRC 381 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEc----cCCcceeeecccCCccee
Confidence 99998 9999999998 45555554332279999999999999999998 999998 556666677766332 24
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 491 ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 491 v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+.+...++.+.++++|+.|+.|++|++.+..
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred EecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 4555668899999999999999999998643
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=228.55 Aligned_cols=278 Identities=20% Similarity=0.311 Sum_probs=224.1
Q ss_pred eEEEEecCC-CCEEEEE-------eCCCcEEEEeCCCCcEEEEec--ccccceeEEEEecC-CCEEEEEeCCCcEEEEeC
Q 009763 226 IVSLDIHYS-KDVIATG-------GVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 226 I~~~~~s~~-~~~l~t~-------~~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~ 294 (526)
=.++.|||- .++||++ ...|.+.|.++...+-+..+. .-...+..++|+++ .+.+++++.||++++||.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 367889983 3344433 236889999986444444333 24567999999984 567999999999999996
Q ss_pred CCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLIL 372 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 372 (526)
.... .++..++.|..+|.++.|++ .+..++++|.|++|++|+...++.+.++. +|..-|....|+| .++++
T Consensus 91 ~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-----gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 91 TMPS--KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-----GHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred CCCC--cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-----CCccEEEEEecCCCCCCeE
Confidence 5433 68889999999999999998 45678888999999999999999999986 6788999999999 78999
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCCCcc-ceEEecCCCCCCeeEEE
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVD 449 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~ 449 (526)
++++.||.+++||++..-....+..|...|.++.|+. +.+.|++|+.|+ |++||+|+.+. +..+ ..|...|+.+.
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk 241 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVK 241 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--cCCceEEEEEe
Confidence 9999999999999987654455888999999999998 677889999998 99999998764 3333 44578999999
Q ss_pred EcCCC-CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEeeC
Q 009763 450 FDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 450 ~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~l 517 (526)
|+|.. .+|++++.| ++||+... ....+.+... |...+..+.|++ ++.++|+++.|+.++||+-
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~---~ds~~e~~~~--HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPER---QDSAIETVDH--HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCcchhhHhhhccccceEEeccccc---chhhhhhhhc--cceEEeccccccccCceeeecccccceeeecc
Confidence 99964 678889999 99999832 2334444444 478899999998 6789999999999999983
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-31 Score=251.29 Aligned_cols=232 Identities=22% Similarity=0.373 Sum_probs=211.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.-+|.++.|-+..+++++|+.|..|+||+..+++.+..|..|..-|.+++.+|...+++++|.|-+|++||.+.. +.+
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~ 132 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WAC 132 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eee
Confidence 457888999999999999999999999999999999999999999999999999999999999999999999754 689
Q ss_pred eEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc--CCcEEEEEeCCC
Q 009763 303 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEA 379 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg 379 (526)
.+++.+|+..|.+++|+| |.+.|++++-|++|++|.+.+..+..++. +|...|+|+++-+ |..+|++|+.|.
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-----ccccCcceEEeccCCCcceEEecCCCc
Confidence 999999999999999999 66899999999999999999998888886 7888999999998 447999999999
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
.|+|||..+..+++++.+|...|..+.|+|.-.++++|+.|| ++||+..+.+....+... ...+++++-.+.+..++
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIA 285 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEE
Confidence 999999999999999999999999999999999999999999 999999887777666654 46788888777777777
Q ss_pred EEeCC
Q 009763 459 VASAD 463 (526)
Q Consensus 459 ~~~~d 463 (526)
+|.++
T Consensus 286 vG~De 290 (794)
T KOG0276|consen 286 VGFDE 290 (794)
T ss_pred EeccC
Confidence 77665
No 56
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.5e-32 Score=243.85 Aligned_cols=278 Identities=22% Similarity=0.357 Sum_probs=231.1
Q ss_pred cCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 220 KTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
.+|+++|.|++=+|.. ..+++|+.||.|++||+.+..+..++..|.+.|..|++.. ..+++++.|.+|+.|.+..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-- 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-- 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC--
Confidence 7899999999999976 7899999999999999999999999999999999999976 6689999999999998876
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS 377 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~ 377 (526)
...+++.+ .+.+..+.-+..++.++++|. .|.|||......+..+.-. ...+.++.|+| ...+|+++.+
T Consensus 139 --~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG-----~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 139 --PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG-----ADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred --Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC-----CCceeEEecCCCcchheeeecc
Confidence 35555543 456778888878889999876 6999999988888887632 35799999999 5678889999
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc-ceEEecCCCCCCeeEEEEcCCCC
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
|+.|.+||++++.++..+.. ...-+.|+|+|++..+++++.|. ++.||+|.... +..+..+ ...|.++.|+|.|+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQ 285 (433)
T ss_pred CCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCCCcc
Confidence 99999999999998877652 34567899999988999999997 99999998654 3444433 77899999999999
Q ss_pred EEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 456 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
-+++|+.| |+||..+.... -..+.. .--..|.|+.||.|.+|+++||+|+.|++|.-..
T Consensus 286 EfvsgsyDksIRIf~~~~~~S----RdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHS----RDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhccccccceEEEeecCCCcc----hhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999 99999844322 111111 1145799999999999999999999999998754
No 57
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7.8e-31 Score=245.09 Aligned_cols=296 Identities=21% Similarity=0.317 Sum_probs=227.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE----EEEec-ccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI----VTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~----~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
.++|...|.++++.|.|-.|++|+.|..|++||+..... .+.+. .....|+++.|++.|..|++.+.....+|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 456677899999999999999999999999999875321 22222 2345699999999999988888888999999
Q ss_pred CCCCCcee---------eeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCeeE
Q 009763 294 GSEDGNYD---------CKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 294 ~~~~~~~~---------~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~ 362 (526)
-......+ -....+||...++|.+|||.. ..|++++.||++++||++..+. ...+......+...+++.
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 65532111 223446899999999999965 5799999999999999987553 333433333455678999
Q ss_pred EEEccCCcEEEEEeCCCcEEEEECCCCce---eeEecCCCC--CeEEEEECCCCCEEEEEeCCc-EEEEEcCCCc-cceE
Q 009763 363 AAFHPDGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRS 435 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~-~~~~ 435 (526)
++|++||.+||+|..||.|.+|+.++... ...-+.|.. .|+||.||++|++|++-+.|. +++||+|+.+ ++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 99999999999999999999999865422 222245666 899999999999999999887 9999999865 4444
Q ss_pred EecCCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC
Q 009763 436 FESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 509 (526)
Q Consensus 436 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 509 (526)
........+-+.++|+|+.++|++|+.- ..++.++. .++..+..+... ...|..+.|+|.-+.|.+|+.|
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~--~t~d~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR--MTLDTVYKIDIS--TASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec--cceeeEEEecCC--CceEEEEeecchhhheeeecCC
Confidence 4444446678899999999999998763 33444332 445555555443 6788999999998889999999
Q ss_pred CcEEEeeCC
Q 009763 510 RNLRVFGLP 518 (526)
Q Consensus 510 g~v~iw~l~ 518 (526)
|.++||-=+
T Consensus 479 G~~~vyYdp 487 (641)
T KOG0772|consen 479 GTAHVYYDP 487 (641)
T ss_pred CceEEEECc
Confidence 999997543
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.5e-29 Score=220.54 Aligned_cols=285 Identities=22% Similarity=0.343 Sum_probs=240.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC--CCcEEEEeCCCCCce
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNY 300 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~ 300 (526)
.+.|+++.|+.+|.++++++.|.+++|||..+++.+.++..+.-.|..++|......++.++. |.+|+..++.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--- 90 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--- 90 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC---
Confidence 457999999999999999999999999999999999999988889999999877776776666 889999999887
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
+.++.|.||...|+.|+.+|-++.+++++.|++|++||++..++...+... .-..++|.|.|.++|++.....
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-------~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-------GRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-------CCcceeECCCCcEEEEecCCCe
Confidence 889999999999999999999999999999999999999988777666532 3456899999999999998889
Q ss_pred EEEEECCCC--ceeeEec---CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCC-CeeEEEEcCC
Q 009763 381 VKIWDVKSQ--ANVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET-PTNSVDFDHS 453 (526)
Q Consensus 381 i~iwd~~~~--~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~i~~i~~s~~ 453 (526)
|++||+|+. .+..++. +.....+.+.|+|||++|+.++..+ +.+.|.-+|.....+..+.... -.....|.|+
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999999974 3444443 3356889999999999999999988 9999999999888888765433 2367899999
Q ss_pred CCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCCC
Q 009763 454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPS 524 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~~ 524 (526)
++++++|+.| +.+|++ .....+..+.+. +.+++.++.|+|.-.+++++ +..+.+|=....+.++
T Consensus 244 s~Fvl~gs~dg~i~vw~~----~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~~~~ 309 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNL----ETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDALPA 309 (311)
T ss_pred CcEEEEecCCCcEEEEEc----CCCcEeeEecCC-CCCCccccccCCceeeeeec--CceEEEEeccccccCC
Confidence 9999999998 999998 556666666664 47789999999987777666 4678888776555443
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=7.8e-30 Score=235.64 Aligned_cols=289 Identities=20% Similarity=0.330 Sum_probs=233.6
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--CcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEe
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--GQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQ 293 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd 293 (526)
+......++|+++.|+|...++++|+.||+++||.++. ...++.+.-...+|.+.+|.|+|. .+++++.....+.||
T Consensus 207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 33444457999999999999999999999999998753 345677776788999999999999 899999999999999
Q ss_pred CCCCCceeeeEecccCc-cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 294 GSEDGNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
+.+.. ...+..+.++. ..+.....+|++++|+..+..|.|.+....+++.+..+... +.|..++|+.|+..|
T Consensus 287 le~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 287 LETAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE------GVVSDFTFSSDSKEL 359 (514)
T ss_pred ccccc-cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec------cEEeeEEEecCCcEE
Confidence 98743 23444445554 35677888999999999999999999999999998888643 579999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCC-CeEEEEECCCCCEEEEEeCCc-EEEEEcCC------CccceEEecCCCCCC
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRK------LKNFRSFESSDSETP 444 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~------~~~~~~~~~~~~~~~ 444 (526)
++.+.+|.|.+||++...++..+....+ .-++++.+++|.||++|++.| |.|||..+ .+++..+... ...
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~ 437 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTA 437 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--hee
Confidence 9999999999999999999988864321 345677889999999999999 99999653 3444444333 568
Q ss_pred eeEEEEcCCCCEEEEEeCC----eEEEEEecccCcceeeeeecCC-CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 445 TNSVDFDHSGSYLAVASAD----IRVYQVASVKADWNCIKTFPDL-SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~d----i~v~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
|+++.|++++++|+.++.. +++..+.+ ......|+.. ..-+.|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS----~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPS----CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccc----eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999998875 88887733 2333333321 124679999999999999999999999999874
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.8e-30 Score=248.90 Aligned_cols=274 Identities=23% Similarity=0.350 Sum_probs=237.5
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec
Q 009763 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (526)
.-++|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||.... +.+..+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTL 255 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cccccc
Confidence 346677 466777775 458999999999877766666899999999999999999999999999999876 667777
Q ss_pred cc-CccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEE
Q 009763 307 KD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (526)
Q Consensus 307 ~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 385 (526)
.+ |...|-+++|. +..+.+|+.|+.|..+|++..+..... ..+|...|+.+.|++|+.++|+|+.|+.+.|||
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~----~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST----LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh----hhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 77 99999999997 788999999999999999988766652 337888999999999999999999999999999
Q ss_pred CCCCceeeEecCCCCCeEEEEECC-CCCEEEEEeC--Cc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEe
Q 009763 386 VKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAH--DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~--d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 461 (526)
.....+...+..|...|..++|+| ...+||+|+. |+ |++||..++..+..+.. ...|.++.|++..+-|+++.
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence 988899999999999999999999 4678888764 45 99999999998888776 67899999999987777654
Q ss_pred CC----eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 462 AD----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 462 ~d----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.. +.||.+ .....+..+.+| ...|..++++|||..+++|+.|.++++|++-..
T Consensus 407 G~s~n~i~lw~~----ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKY----PSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEec----cccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 32 999999 446677777776 788999999999999999999999999999764
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=4e-30 Score=232.10 Aligned_cols=287 Identities=21% Similarity=0.354 Sum_probs=231.1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC---EEEEEeCCCcEEEEeCCCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD---LFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~ 297 (526)
.|.+-|.++... +++|++|++||.+++||.. |+.+..+.||.++|.+++|.-.+. .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 367778888877 7899999999999999986 899999999999999999875433 5999999999999998775
Q ss_pred Cc-eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-----EEEE---------------eecCCCCCC
Q 009763 298 GN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-----CLTQ---------------VSDAGTDGR 356 (526)
Q Consensus 298 ~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-----~~~~---------------~~~~~~~~~ 356 (526)
.. ...+..-.||...|-++...++|..+++|+.|..+.+|+..+.. .... .......+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 42 23334445999999999999999999999999999999932210 0000 000012478
Q ss_pred CCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc-ce
Q 009763 357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FR 434 (526)
Q Consensus 357 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~ 434 (526)
..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...++++.++|...+|++|+.|. +++||.|++.- +.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 89999999998 67889999999999999999999888874 56899999999999999999998 99999998643 23
Q ss_pred EEecCCCCCCeeEEEEcCCCCE-EEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 009763 435 SFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~-l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 511 (526)
......|...|.++.|+|...+ |++|+.| +++||++. .+.++..+.+| ...|.++.|. ++.++++||.|.+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS---~k~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS---TKAPLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc---CCCcceeeccC--CceEEEEecc-CCceEEeccCcce
Confidence 3334445789999999998765 5567777 99999943 34456666665 8899999997 6678999999999
Q ss_pred EEEeeCC
Q 009763 512 LRVFGLP 518 (526)
Q Consensus 512 v~iw~l~ 518 (526)
|+|+.-.
T Consensus 412 l~i~~~~ 418 (423)
T KOG0313|consen 412 LRIFKGS 418 (423)
T ss_pred EEEeccc
Confidence 9998754
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=7.5e-31 Score=260.04 Aligned_cols=292 Identities=19% Similarity=0.260 Sum_probs=216.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccc----------cceeEEEEec---CCC--EEEE
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS----------KKVTSVKFVT---EGD--LFLT 282 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~----------~~V~~l~~~~---~~~--~l~s 282 (526)
+...|++.|+++.|++||+|||+||.||.|+||.+...+....-.+.. +.+..+.-++ .++ ..-.
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 445899999999999999999999999999999976533211100000 0011111111 011 1112
Q ss_pred EeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
+.....+.+-+..-.-..+++..+.||.+.|..|.|+ .+++|++++.|.+|++|++....++..| .|...|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F------~HndfVTc 414 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVF------SHNDFVTC 414 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEE------ecCCeeEE
Confidence 2222222211110000126778899999999999999 5779999999999999999999999999 57789999
Q ss_pred EEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC
Q 009763 363 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD 440 (526)
Q Consensus 363 ~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 440 (526)
++|+| |.++|++|+-||.|+||++...+.+.-.. -..-|++++|.|+|++.++|+.+| +++|+....+....+....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999 89999999999999999998776665544 447899999999999999999999 9999999888766655433
Q ss_pred C------CCCeeEEEEcCCCC-EEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 009763 441 S------ETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 441 ~------~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 511 (526)
+ ...|+.+.|.|... .+++.+.| |+||+. .+...+..|.+......-....|+.||++|++++.|..
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~----~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG----RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec----cchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 2 23699999997654 34444445 999997 55667777777655556677899999999999999999
Q ss_pred EEEeeCCCCC
Q 009763 512 LRVFGLPGND 521 (526)
Q Consensus 512 v~iw~l~~~~ 521 (526)
|++|+++...
T Consensus 570 VYiW~~~~~~ 579 (712)
T KOG0283|consen 570 VYIWKNDSFN 579 (712)
T ss_pred EEEEeCCCCc
Confidence 9999986544
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.6e-30 Score=261.43 Aligned_cols=290 Identities=20% Similarity=0.332 Sum_probs=239.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEe--CCCcEEEEeCCC------------CcEEEEecccccceeEEEEecCCCEEEEEe
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGG--VDTNAVLFDRPS------------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 284 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~--~dg~v~vwd~~~------------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 284 (526)
..++...|.+++.+|+|..++||| .||.+++|+.+. .+.+.....|.+.|+|+.|+|||.+||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 444566799999999999999999 899999998542 234556778999999999999999999999
Q ss_pred CCCcEEEEeCCC----------C-----CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEee
Q 009763 285 ADKTVRVWQGSE----------D-----GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS 349 (526)
Q Consensus 285 ~dg~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 349 (526)
.|+.|.||.... + ..++++..+.+|...|..++|+|++.+|++++.|++|.+||..+.+.+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999998762 0 2367888999999999999999999999999999999999999998888776
Q ss_pred cCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCC------CCCeEEEEECCCCCEEEEEeC--Cc
Q 009763 350 DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH------VGAVTAISFSENGYYLATAAH--DG 421 (526)
Q Consensus 350 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~--d~ 421 (526)
+|...|..+.|.|-|++|++-+.|++|+||++.+....+.+..+ ...+..+.|||||.+|++... ++
T Consensus 169 -----~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 169 -----GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred -----cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 77889999999999999999999999999998777666666443 335788999999999998643 22
Q ss_pred ---EEEEEcCCCccceEEecCCCCCCeeEEEEcCC-------------CC----EEEEEeCC--eEEEEEecccCcceee
Q 009763 422 ---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-------------GS----YLAVASAD--IRVYQVASVKADWNCI 479 (526)
Q Consensus 422 ---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~-------------~~----~l~~~~~d--i~v~~~~~~~~~~~~~ 479 (526)
+.|.+-.+.+.-..+.+| ..++.++.|+|. .. .+|+|+.| +.||... ..+++
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~----~~RPl 317 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA----LPRPL 317 (942)
T ss_pred cceeEEEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC----CCCch
Confidence 889888777766677666 679999999871 11 56778888 9999972 23333
Q ss_pred eeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 480 KTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 480 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
...... ....|..++|+|||..|++++.||+|.++.++..
T Consensus 318 ~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 318 FVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 222221 2568999999999999999999999999999754
No 64
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.1e-29 Score=215.58 Aligned_cols=244 Identities=23% Similarity=0.418 Sum_probs=208.6
Q ss_pred EEEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEECCCeE
Q 009763 257 IVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTW 334 (526)
Q Consensus 257 ~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i 334 (526)
.++.+.+|.+.+..++|+|- |..|++|+.|+.|++|+......+.+...+. +|+..|..++|+|.|++|+++|.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46778899999999999997 8899999999999999998655677776664 799999999999999999999999999
Q ss_pred EEEeCCCCe--EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC---ceeeEecCCCCCeEEEEECC
Q 009763 335 CFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSE 409 (526)
Q Consensus 335 ~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~ 409 (526)
.||.-..+. ++..+. +|...|.|++|+++|++||+++.|..|-||.+..+ ++...++.|...|..+.|+|
T Consensus 86 ~Iw~k~~~efecv~~lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred EEeecCCCceeEEeeee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 999877654 444443 88899999999999999999999999999998754 56778899999999999999
Q ss_pred CCCEEEEEeCCc-EEEEEcC---CCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 410 NGYYLATAAHDG-VKLWDLR---KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 410 ~~~~l~~~~~d~-i~iwd~~---~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
...+|++++.|. |++|+-. ...+..++..+ ...|.+++|++.|..|++++.| ++||.+. ..+.
T Consensus 161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~--~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~---------~~~~ 229 (312)
T KOG0645|consen 161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH--ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY---------TDLS 229 (312)
T ss_pred CcceeEEeccCCeEEEEeecCCCCeeEEEEecCc--cceEEEEEecCCCceEEEecCCcceEeeeec---------cCcc
Confidence 999999999998 9999876 23456667665 5699999999999999999999 8898852 1222
Q ss_pred CCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 484 DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 484 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+.|...+..+.|. ...|++++.|+.|++|.-..
T Consensus 230 -~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 230 -GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred -hhcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 2246788999998 45799999999999998764
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-30 Score=252.28 Aligned_cols=246 Identities=23% Similarity=0.395 Sum_probs=218.9
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
+..|.++|..++|+|++.++++||.|-.|+||+.++.+++.++.||-..|..+.|++.-.+++++|.|.+|+||+..+.
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr- 125 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR- 125 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE------------------------eecCCCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ------------------------VSDAGTD 354 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~------------------------~~~~~~~ 354 (526)
.++..+.||...|.|..|||....++++|-|.+|++||+..-+.... +...-..
T Consensus 126 --~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 126 --KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred --ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 89999999999999999999999999999999999999853211000 0011135
Q ss_pred CCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCc
Q 009763 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 431 (526)
Q Consensus 355 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~ 431 (526)
+|...|+-++|||.-.+|++|+.|..|++|.+...+ .+.+..+|.+.|.++-|+|...++++.+.|+ |++||+.+.+
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 888999999999999999999999999999987654 3556788999999999999999999999998 9999999999
Q ss_pred cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 432 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 432 ~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
.+.++... ....+.++-+|..+++++|.+. +.||.+
T Consensus 284 ~v~tfrre--ndRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 284 SVQTFRRE--NDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred ceeeeecc--CCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 99998765 5678899999999999999877 778876
No 66
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.3e-28 Score=247.30 Aligned_cols=266 Identities=20% Similarity=0.246 Sum_probs=201.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-------------EEecccccceeEEEEec-CCCEEEEEeCCCcE
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-------------TTLSGHSKKVTSVKFVT-EGDLFLTGSADKTV 289 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~-------------~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i 289 (526)
..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.||+|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 45555566666665666666666666664433221 24678999999999999 88899999999999
Q ss_pred EEEeCCCCCc----eeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE
Q 009763 290 RVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 290 ~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (526)
++||+.+.+. ...+..+.+|...|.+++|+|++ ++|++++.|++|++||++++..+..+. .|...|.+++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-----~h~~~V~sla 175 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-----CHSDQITSLE 175 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-----CCCCceEEEE
Confidence 9999976421 13566788999999999999975 799999999999999999998877764 5667899999
Q ss_pred EccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCC-eEEEEECCCCCEEEEEe----CCc-EEEEEcCCCccceEEec
Q 009763 365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA-VTAISFSENGYYLATAA----HDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 365 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~~~~----~d~-i~iwd~~~~~~~~~~~~ 438 (526)
|+|+|.+|++|+.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .++ |++||+++.........
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 9999999999999999999999999999888888764 45678898877777654 245 99999998654333322
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC
Q 009763 439 SDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 439 ~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
......+....|++++.+|++++. | |++|++... ........ .....+..++|.|.
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~----~~~~~~~~-~s~~~~~g~~~~pk 314 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE----RLTFCSSY-SSVEPHKGLCMMPK 314 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC----ceEEEeec-cCCCCCcceEeccc
Confidence 222345667789999999998874 5 999999532 23322221 12446677888774
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=7.9e-29 Score=235.91 Aligned_cols=247 Identities=34% Similarity=0.621 Sum_probs=214.4
Q ss_pred EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEe
Q 009763 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd 338 (526)
.++.+|.++|++++|+|++++|++++.||.|++|++.+. .....+..|...+..+.|+|+++++++++.||.+.+||
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC---CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 456789999999999999999999999999999999875 45666778999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe
Q 009763 339 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
+.+++....+. .|...+.++.|++++.++++++.+|.|.+||+++++....+..|...|.++.|+|++.++++++
T Consensus 80 ~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 80 LETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 99887766665 4556899999999999999988899999999998888888888889999999999999999988
Q ss_pred CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEE
Q 009763 419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVK 495 (526)
Q Consensus 419 ~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (526)
.++ |++||++.++....+..+ ...+.++.|+|++..+++++.+ +++|++ .....+..+..+ ...+.++.
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~----~~~~~~~~~~~~--~~~i~~~~ 226 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDL----STGKCLGTLRGH--ENGVNSVA 226 (289)
T ss_pred CCCcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEecCCCcEEEEEC----CCCceecchhhc--CCceEEEE
Confidence 676 999999988888877754 5689999999999888888867 999997 334455555443 66899999
Q ss_pred EcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 496 FGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 496 ~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|++++.++++++.||.|++|++....
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 99999889888889999999997543
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=250.86 Aligned_cols=276 Identities=27% Similarity=0.509 Sum_probs=242.7
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
.+...+.+..|+ .+++++++.++++.+||..++..+.. +.||.+.|++++|..-+.+|++|+.|.++++||..++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-- 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-- 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence 456688899888 77899999999999999999999888 9999999999999877889999999999999999887
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
.|...+.+|.+.|.++... +.++++|+.|.+|++|++.++..+..+. +|..+|.++..+ +.++++|+.||
T Consensus 282 -~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-----~h~~~V~~v~~~--~~~lvsgs~d~ 351 (537)
T KOG0274|consen 282 -ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-----GHTGPVNCVQLD--EPLLVSGSYDG 351 (537)
T ss_pred -cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-----cccccEEEEEec--CCEEEEEecCc
Confidence 8999999999999999874 6678889999999999999999998885 477899999998 88999999999
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC-ccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
.|++||+.+++++..+.+|...|.++.+... ..+++|+.|+ |++||+++. +++..+..+ ...+..+ ...+++|
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l--~~~~~~L 426 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSL--LLRDNFL 426 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC--ccccccc--cccccee
Confidence 9999999999999999999999999998654 8999999998 999999999 888888776 4445444 3468899
Q ss_pred EEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 458 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
++++.| |++|+. ....++..+... +.+.|..+++. ...+++++.||.+++||++....
T Consensus 427 vs~~aD~~Ik~WD~----~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 427 VSSSADGTIKLWDA----EEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EeccccccEEEeec----ccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 999988 999997 667777877764 46788888876 46788888999999999987654
No 69
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3e-28 Score=245.51 Aligned_cols=249 Identities=20% Similarity=0.333 Sum_probs=195.6
Q ss_pred EeCCCcEEEEeCCCCcEEEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCc-----eeeeEecccCccceE
Q 009763 241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGN-----YDCKHTLKDHTAEVQ 314 (526)
Q Consensus 241 ~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~ 314 (526)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.+++. ..++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998887888899999999999999996 78999999999999999976421 123456788999999
Q ss_pred EEEEecCCCE-EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceee
Q 009763 315 AVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA 393 (526)
Q Consensus 315 ~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 393 (526)
+++|+|++.. +++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9999998876 5789999999999999998776653 23579999999999999999999999999999999999
Q ss_pred EecCCCCCeEE-----EEECCCCCEEEEEeCC----c-EEEEEcCC-CccceEEecCCCCCCeeEEEEcCCCCEEEEEeC
Q 009763 394 KFDGHVGAVTA-----ISFSENGYYLATAAHD----G-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 394 ~~~~~~~~i~~-----l~~s~~~~~l~~~~~d----~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
.+.+|.+.+.+ ..|++++.+|++++.+ + |+|||+++ .+++..+........+......++|.++++|+.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 99999876543 3356888888887655 2 99999996 455555544433334444444556888999988
Q ss_pred C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCC
Q 009763 463 D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 500 (526)
Q Consensus 463 d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 500 (526)
| +++|++... .+..+....+..++.+++|.|+.
T Consensus 284 D~tIr~~e~~~~-----~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLG-----SIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCC-----cEEeecccccCCCccceEEcccc
Confidence 8 999998432 22333333346778889999964
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=7.7e-31 Score=233.87 Aligned_cols=238 Identities=23% Similarity=0.427 Sum_probs=204.8
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
....+|.+.|.|+.|. .+.+++|++|.+|++||+++|+++.++-+|...|..+.|+ +.++++++.|.++.+||+..
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 3567899999999987 5699999999999999999999999999999999999995 56899999999999999988
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
.....+.+.+.||...|+.+.|+ .+|+++++.|.+|++|++.++..+.++. +|...|.|+.+ .++++++|+
T Consensus 307 ps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-----gHkRGIAClQY--r~rlvVSGS 377 (499)
T KOG0281|consen 307 PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-----GHKRGIACLQY--RDRLVVSGS 377 (499)
T ss_pred chHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-----cccccceehhc--cCeEEEecC
Confidence 76666777888999999999995 6799999999999999999999999886 67778877766 588999999
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceE-------EecCCCCCCeeEE
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS-------FESSDSETPTNSV 448 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~-------~~~~~~~~~i~~i 448 (526)
.|.+|++||+..|.++..+++|+.-|.|+.| |.+.+++|..|| |++||+..+...+. .....+.+.|..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence 9999999999999999999999999999999 677999999999 99999987543211 1112236688899
Q ss_pred EEcCCCCEEEEEeCC--eEEEEEec
Q 009763 449 DFDHSGSYLAVASAD--IRVYQVAS 471 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d--i~v~~~~~ 471 (526)
.|+ ...+++++.+ |-||++..
T Consensus 456 QFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 456 QFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eec--ceEEEeccCCCeEEEEEcCC
Confidence 986 4455555555 99999854
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=227.84 Aligned_cols=283 Identities=17% Similarity=0.307 Sum_probs=238.0
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----E---e-----------cccccceeEEEEecCCC
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----T---L-----------SGHSKKVTSVKFVTEGD 278 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~----~---~-----------~~h~~~V~~l~~~~~~~ 278 (526)
..+..|.-+|+|++++|++.++++++.+|+|.=|+..+++... . + ++|...|.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4567788899999999999999999999999999988776331 1 0 26888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 358 (526)
+|++|+.|..|.||+..+. +.+..+.+|.+.|.+++|-...+.+++++.|+++++|+++....+.++. +|..
T Consensus 216 ylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-----GHqd 287 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-----GHQD 287 (479)
T ss_pred EEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-----CCcc
Confidence 9999999999999999987 6777899999999999999888899999999999999999887777765 7888
Q ss_pred CeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEe
Q 009763 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 437 (526)
.|..+....-++.+.+|+.|+++++|++. .+....+.++.+.+-|++|- |...|++|+++| |.+|++-+.+++.+..
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence 99999999889999999999999999994 34445677888899999997 556889999999 9999999988877665
Q ss_pred cCCC----------CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEE
Q 009763 438 SSDS----------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV 505 (526)
Q Consensus 438 ~~~~----------~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 505 (526)
.... ..+|++++..|...++++|+.+ +++|.+..+....+++..+.. .+.|++++|+++|+.+++
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCCCEEEE
Confidence 4221 2378999999999999999988 999999665555566655553 789999999999996665
Q ss_pred E-eCCCcE
Q 009763 506 G-SMDRNL 512 (526)
Q Consensus 506 ~-~~dg~v 512 (526)
| +....+
T Consensus 443 giGkEhRl 450 (479)
T KOG0299|consen 443 GIGKEHRL 450 (479)
T ss_pred eccccccc
Confidence 5 444444
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.3e-28 Score=261.36 Aligned_cols=265 Identities=17% Similarity=0.279 Sum_probs=214.9
Q ss_pred CCcEEEEeCCCCcEEEE-----ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC----c-eeeeEecccCccce
Q 009763 244 DTNAVLFDRPSGQIVTT-----LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG----N-YDCKHTLKDHTAEV 313 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~-----~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----~-~~~~~~~~~h~~~v 313 (526)
+|.+++|+......... +..|.+.|.+++|+|+|++|++|+.|+.|+||+..... . ......+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888876555433 33589999999999999999999999999999975410 0 01222333 34679
Q ss_pred EEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCce
Q 009763 314 QAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN 391 (526)
Q Consensus 314 ~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~ 391 (526)
.+++|++ ++.+|++++.||+|++||+.+++.+..+. +|...|++++|+| ++.+|++|+.||.|++||++++..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-----EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-----CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 9999987 47899999999999999999998877765 6778999999997 789999999999999999999988
Q ss_pred eeEecCCCCCeEEEEEC-CCCCEEEEEeCCc-EEEEEcCCCc-cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEE
Q 009763 392 VAKFDGHVGAVTAISFS-ENGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV 466 (526)
Q Consensus 392 ~~~~~~~~~~i~~l~~s-~~~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v 466 (526)
+..+..+ ..|.++.|+ ++|.+|++|+.|+ |++||+++.+ .+..+..+ ...|.++.|. ++.+|++++.| +++
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h--~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH--SKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC--CCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 8888754 679999995 5799999999998 9999998765 34445443 6789999997 67889999888 999
Q ss_pred EEEeccc--CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 467 YQVASVK--ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 467 ~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
|++.... ..+..+..+.+| ...+.++.|++++.+|++|+.||.|++|+....
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9985421 124556677775 678899999999999999999999999997543
No 73
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.2e-28 Score=218.88 Aligned_cols=245 Identities=18% Similarity=0.268 Sum_probs=208.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
...+|++.|+|+.|+.+|.+||||+.+|.|+||+..++.....+...-..|.=+.|+|.+..|+.|+.||.+.+|.+..+
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence 35679999999999999999999999999999999999988888766677888999999999999999999999999886
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC------------------------
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT------------------------ 353 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------ 353 (526)
...+.+.+|..++++=.|.|+|+.++++..||+|++||+.+++.+..+.....
T Consensus 181 ---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 181 ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred ---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 56677889999999999999999999999999999999999988777651100
Q ss_pred ----------------------CCCCCCeeEEEEcc---CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEEC
Q 009763 354 ----------------------DGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 354 ----------------------~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (526)
..+...+.|+.+.| .-.+.|+|+-||+|.|||+...+....+. |..+|+.+.|.
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~ 336 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL 336 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEc
Confidence 01111222333333 44678999999999999998877766665 78889999999
Q ss_pred CCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 409 ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 409 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
+ ..+|++++.+| |+.||.|+++....+..| ...|.+++++|+++++++++.| .+||..
T Consensus 337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred C-cchheeeccCceEEeeeccccceEEEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 8 67888888888 999999999999988877 7899999999999999999998 777764
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.6e-27 Score=198.10 Aligned_cols=285 Identities=19% Similarity=0.304 Sum_probs=225.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------C---------cEEEEecccccceeEEEEecCCCEEEEEeCCCc
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------G---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~------~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 288 (526)
..|.+++|+|.|.+.++|+..++++|.-... + -..+.-+.|.+.|.|.+|+|+|.++++|+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 4799999999999999999999998875321 1 012233578999999999999999999999999
Q ss_pred EEEEeCCCCC--ceeeeEecccCccceEEEEEecC----CCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCee
Q 009763 289 VRVWQGSEDG--NYDCKHTLKDHTAEVQAVTVHAT----NKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 289 i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~~p~----~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 361 (526)
|++.-++... ....-..+.-|.+.|..++|..+ +.+|++++ .|..|++-|..+|+....+. +|...|.
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-----ghtghil 187 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-----GHTGHIL 187 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-----CCcccEE
Confidence 9998765532 11233456679999999999642 45677665 47788888999988877775 5666665
Q ss_pred EEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC-------CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccc
Q 009763 362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF 433 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~ 433 (526)
++ ++-+|-++++|+.|.+|++||++-..++..+.. ..+.|.+++..|.|++|++|..|. ..+||+|.++.+
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 54 233688999999999999999999888877642 235799999999999999999998 999999999999
Q ss_pred eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 009763 434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 511 (526)
+.+..+ ...|.++.|+|...|+++++.| |++-++...-...-.+.... .|...+..+.|+|..-.+++.+.|.+
T Consensus 267 q~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 267 QRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred eeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCccceeeeccCcce
Confidence 998766 7899999999999999999999 78777633221111222222 34778889999999888999999999
Q ss_pred EEEeeCC
Q 009763 512 LRVFGLP 518 (526)
Q Consensus 512 v~iw~l~ 518 (526)
+.+|-++
T Consensus 343 ~tlwa~~ 349 (350)
T KOG0641|consen 343 ATLWALN 349 (350)
T ss_pred EEEeccC
Confidence 9999875
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=240.87 Aligned_cols=291 Identities=19% Similarity=0.364 Sum_probs=238.2
Q ss_pred CCCCeE---EEEecC-CCCEEEEEeCCCcEEEEeCCCCc------EEEEecccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 222 SKPGIV---SLDIHY-SKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 222 ~~~~I~---~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
|..+|. .+..+. .+++|++||.||.|++|+..... .+..++.|...|+.+....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 334454 444443 56789999999999999875422 36778899999999999999999999999999999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEE-ecCCCEEEEEECCCeEEEEeCCCCeE--EEEee---cCCCC-CCCCCeeEEE
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGIC--LTQVS---DAGTD-GRPEGYTSAA 364 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~-~p~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---~~~~~-~~~~~v~~~~ 364 (526)
|+...++ ..|..++..|.+.|.|+++ -++...+++||.|+.|.+||++++.. +..+. ..... ++..++++++
T Consensus 100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred eecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9988764 4688889999999999999 77888999999999999999998832 22222 11122 6778999999
Q ss_pred EccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCC
Q 009763 365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 365 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
.++.|..|++|+..+.+++||.++++.+..+.+|...|..+..+++|..+++++.|+ |++||+...+++.++..| ..
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e 256 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH--KE 256 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec--cC
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999887 55
Q ss_pred CeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 444 PTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
.++++..+|+-.++++|+.+..|+..+..+. ......+.. ..+|..+..+.+.+-+.+++.|+.|+-|....
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~~~tlick~---daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP-AKSTLICKE---DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc-hhheEeecC---CCchhhhhhccccCCceeeeccccceecCCcc
Confidence 6999999999999999999977776544322 122222221 45677777776555567888899999998754
No 76
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2e-27 Score=238.76 Aligned_cols=244 Identities=18% Similarity=0.243 Sum_probs=191.6
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEecccccceeEEEEecCC-CEEEEEeCCC
Q 009763 217 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADK 287 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg 287 (526)
++..+|.+.|++++|+| ++++|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34668999999999999 7889999999999999998764 3567889999999999999975 6899999999
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC-CeeEEEEc
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAFH 366 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~~ 366 (526)
+|+|||+.++ .....+.+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+. +|.. ....+.|.
T Consensus 149 tVrIWDl~tg---~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-----~H~~~~~~~~~w~ 220 (493)
T PTZ00421 149 VVNVWDVERG---KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-----AHASAKSQRCLWA 220 (493)
T ss_pred EEEEEECCCC---eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-----cCCCCcceEEEEc
Confidence 9999999886 6677788899999999999999999999999999999999998877765 3332 34567788
Q ss_pred cCCcEEEEEe----CCCcEEEEECCCCc-eeeEecCC-CCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcCCCccceEEec
Q 009763 367 PDGLILGTGT----SEALVKIWDVKSQA-NVAKFDGH-VGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 367 ~~~~~l~~g~----~dg~i~iwd~~~~~-~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~ 438 (526)
+++..+++++ .|+.|++||+++.. +......+ ...+....|++++.+|++++. |+ |++||+++++.+.....
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 8777766654 47899999998754 34333323 345666789999999988874 67 99999999887766544
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCeEEEEE
Q 009763 439 SDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (526)
Q Consensus 439 ~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 469 (526)
. ...++..++|.|.-..=+-.+.=.++|.+
T Consensus 301 ~-s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l 330 (493)
T PTZ00421 301 S-SVEPHKGLCMMPKWSLDTRKCEIARFYAL 330 (493)
T ss_pred c-CCCCCcceEecccccccccceeeeEEEEe
Confidence 3 24567888888853322222222566665
No 77
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=224.60 Aligned_cols=255 Identities=20% Similarity=0.355 Sum_probs=220.2
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
+..+.+..|...|+-+.|+++|++||+++.|.+..+|++.....++...++.+|..+|..+.|+||.+++++|+.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 34567788999999999999999999999999999999988777788999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC-CCeEEEEECCCCCEE
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-GAVTAISFSENGYYL 414 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l 414 (526)
+||+.+|.....+.. ++...+.+++|.|||..+++|+.|+.+..||+. |.....+++.. ..|.+++..+||+++
T Consensus 295 lwDv~tgd~~~~y~~----~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPS----GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred eccCCcchhhhhccc----CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEE
Confidence 999999998887753 345789999999999999999999999999985 44455555433 469999999999999
Q ss_pred EEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcce
Q 009763 415 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 491 (526)
Q Consensus 415 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 491 (526)
++.+.|. |++|+.........+.. ..+++++.++.+|+++++.-.+ +++|++ ..+..+..+.+|.....+
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise---~~~its~~iS~d~k~~LvnL~~qei~LWDl----~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISE---EQPITSFSISKDGKLALVNLQDQEIHLWDL----EENKLVRKYFGHKQGHFI 442 (519)
T ss_pred EEEecccceeeechhhhhhhccccc---cCceeEEEEcCCCcEEEEEcccCeeEEeec----chhhHHHHhhcccccceE
Confidence 9998887 99999887666554444 5789999999999999987666 999999 577788888888766677
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 492 TCVKFGP-DAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 492 ~~~~~s~-~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
..-+|.- +..++++|+.|+.|+||+..++.+
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKL 474 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence 7778865 558999999999999999988765
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-28 Score=228.12 Aligned_cols=232 Identities=22% Similarity=0.323 Sum_probs=203.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
+..|.+++|..||+++|+|...|.|+|||..+...++.+.+|+.+|..+.|+|. +..|++|+.|+.+++||+.+. .
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---~ 144 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---Y 144 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---E
Confidence 567999999999999999999999999998776678889999999999999994 557889999999999999886 4
Q ss_pred eeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 302 CKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
....+.+|++.|.|.+|+|.. ..+++||.||.|++||++.. ..+..+ .|..+|..+.+-|.|.++++++. .
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------nhg~pVe~vl~lpsgs~iasAgG-n 217 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------NHGCPVESVLALPSGSLIASAGG-N 217 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------cCCCceeeEEEcCCCCEEEEcCC-C
Confidence 466788999999999999965 58999999999999999987 555555 55679999999999999999874 6
Q ss_pred cEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 380 LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 380 ~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
.|++||+-+| +.+..+..|...|+|+.+..++..|++++-|+ |++||+.+.+.+..+.. .++|.+++.+|+++.+
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTV 294 (487)
T ss_pred eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceE
Confidence 7999999865 44555555999999999999999999999999 99999999998888887 5799999999999999
Q ss_pred EEEeCCeEEE
Q 009763 458 AVASADIRVY 467 (526)
Q Consensus 458 ~~~~~di~v~ 467 (526)
++|..++-+.
T Consensus 295 viGmsnGlv~ 304 (487)
T KOG0310|consen 295 VIGMSNGLVS 304 (487)
T ss_pred EEecccceee
Confidence 9999994433
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=209.56 Aligned_cols=247 Identities=25% Similarity=0.404 Sum_probs=209.9
Q ss_pred EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEE
Q 009763 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFY 337 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iw 337 (526)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|++... .........+|.+.|-.++|+| ..+.|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999875 2333445578999999999987 56789999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEE
Q 009763 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 417 (526)
|++.+++...+... ..-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+ ....++.++|+.++.+++..
T Consensus 93 d~r~~k~~~~i~~~------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 93 DIRSGKCTARIETK------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EeccCcEEEEeecc------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence 99999999888632 234568999999999999999999999999988777665 44567888998767766666
Q ss_pred eCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEE
Q 009763 418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCV 494 (526)
Q Consensus 418 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (526)
...| |.|......+++..+..| .....+|.|+|+|+|||+|+.| +.+||+ ....+...+..+ .-+|..+
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH--~snCicI~f~p~GryfA~GsADAlvSLWD~----~ELiC~R~isRl--dwpVRTl 237 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAH--PSNCICIEFDPDGRYFATGSADALVSLWDV----DELICERCISRL--DWPVRTL 237 (313)
T ss_pred cCCceEEEEeccccccccccccC--CcceEEEEECCCCceEeeccccceeeccCh----hHhhhheeeccc--cCceEEE
Confidence 6555 999999999999999888 5788999999999999999999 999998 566777777765 7789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 495 KFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 495 ~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.|+.||++||+|+.|..|-|=+++.++
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCC
Confidence 999999999999999998776665554
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=211.57 Aligned_cols=288 Identities=22% Similarity=0.323 Sum_probs=213.6
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE--EEe--cccccceeEEEEecCCCEEEE-EeCCCcEEE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV--TTL--SGHSKKVTSVKFVTEGDLFLT-GSADKTVRV 291 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~--~~~--~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~i 291 (526)
...++|.+.|++++|+.+|++|++++.|+.|++|++...... +.+ .-.-+..+.+.|.||.+-++. +-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 357899999999999999999999999999999998763211 001 111224678999998875444 445667999
Q ss_pred EeCCCCC--cee-------eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 292 WQGSEDG--NYD-------CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 292 wd~~~~~--~~~-------~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
|.+.... .+. ....-..|.-.|..+-...++.+|++++.|..|.+|++. |+.+..+... ...-+.
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-----q~~n~~ 233 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-----QSSNYD 233 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-----cccccc
Confidence 9764321 110 011112355666677777788999999999999999999 8887777532 234567
Q ss_pred EEEccCCcEEEEEeCCCcEEEEECC---CC-----ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCC----
Q 009763 363 AAFHPDGLILGTGTSEALVKIWDVK---SQ-----ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK---- 429 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~---- 429 (526)
.+.+|+|+++++++..-.|++|.+- .| ..+..+++|...|..++|+++...+++.+.|| ++|||..-
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 8899999999999999999999863 22 34567899999999999999999999999999 99999742
Q ss_pred ---CccceEEe--cCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEE
Q 009763 430 ---LKNFRSFE--SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYI 503 (526)
Q Consensus 430 ---~~~~~~~~--~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 503 (526)
.+.++... .+........+.++|+|+.|+++... +++|... ..+....+... |.+.|++++|+++|+++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se----~g~~~~~~e~~-h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE----DGKDYPELEDI-HSTTISSISYSSDGKYI 388 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc----cCccchhHHHh-hcCceeeEEecCCCcEE
Confidence 22223221 12224455589999999999988766 9999863 33333344332 57899999999999999
Q ss_pred EEEeCCCcEEEee
Q 009763 504 AVGSMDRNLRVFG 516 (526)
Q Consensus 504 ~s~~~dg~v~iw~ 516 (526)
++++ |..++++.
T Consensus 389 atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 389 ATCG-DRYVRVIR 400 (420)
T ss_pred eeec-ceeeeeec
Confidence 9998 78888876
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=210.07 Aligned_cols=262 Identities=16% Similarity=0.267 Sum_probs=213.0
Q ss_pred EEEEeCCCcEEEEeCCC------------CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 238 IATGGVDTNAVLFDRPS------------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 238 l~t~~~dg~v~vwd~~~------------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
|++|++...|.=+++.- ..++..+..|.++|++++. ++.++++||.|-+|+|||+... ..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcc
Confidence 45566655555554321 1225567789999999998 7899999999999999999886 56666
Q ss_pred cccCccceEEEEEecCCC--EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEE
Q 009763 306 LKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383 (526)
Q Consensus 306 ~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 383 (526)
+..|.+.|+++.|.+.-. .|++|+.||.|.+|+......+..+. +|...|+.+++||.+++.++.+.|+.++.
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-----~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-----AHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-----ccccccceeEecCCCceEEEEcCCceeee
Confidence 778999999999988654 89999999999999999998888886 66778999999999999999999999999
Q ss_pred EECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 384 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
||+-.|+.-..+.-. ...+.+.|+|.|.+++.+..++|-+|.+.+...+..+... ..+.++.|. ++.+|++|+++
T Consensus 154 WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCC
Confidence 999988766655432 2345599999999999999999999999887777666543 456777776 56777888877
Q ss_pred --eEEEEEecccCcceeeeeecCCCCCcceEEEEE--cCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 464 --IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF--GPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 464 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+++||-+ ...+...+..| ..+|-++.+ .|++.+|++++.||.|+|||++..
T Consensus 229 ~~i~~~D~d----s~~~~~~~~AH--~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 229 EWISLKDTD----SDTPLTEFLAH--ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEeccC----CCccceeeecc--hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999963 35566677775 888999874 567899999999999999999876
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=8.6e-29 Score=218.91 Aligned_cols=251 Identities=20% Similarity=0.381 Sum_probs=215.1
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc-----eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEE
Q 009763 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-----YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 337 (526)
Q Consensus 263 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (526)
+..+.+-|..|+|||++|++|+.||.|.+||..++.. ++....+.-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 4456688999999999999999999999999887632 23333455688999999999999999999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEE
Q 009763 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 417 (526)
.+++|.++..+.. .|...|+|+.|+.|+..+++++.|.++++.-+++|+++..|.+|.+.|+...|.++|.+++++
T Consensus 291 ri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 291 RIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEecchHHHHhhh----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999998853 677889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC-CEEEEEeCC--eEEEEEecccCcceeeeeecC-CCCCcceE
Q 009763 418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPD-LSGTGKAT 492 (526)
Q Consensus 418 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~-~~~~~~v~ 492 (526)
+.|| |++|+..+.+++.++.......+|+++..-|.+ ..++++... +.|.++ .+..+..|.. ....+...
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-----qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-----QGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-----cceEEeeeccCCccCCceE
Confidence 9999 999999999999999988878899999888865 455555555 555443 4556666543 23356677
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 493 CVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 493 ~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
+.+.+|.|.++++.+.|+.++.|.+.++..
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 888999999999999999999999887753
No 83
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-26 Score=205.05 Aligned_cols=284 Identities=16% Similarity=0.256 Sum_probs=219.1
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
...++.|.++.|+|.++.|+++++||.+++||.........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~-- 85 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG-- 85 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC--
Confidence 3446789999999999999999999999999998876655665 899999999986 456899999999999999985
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
....+..|..+|.||.+.+....+++||+|++|++||.+.......+. ....|.++... |+.|++|+.+.
T Consensus 86 --~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d------~~kkVy~~~v~--g~~LvVg~~~r 155 (323)
T KOG1036|consen 86 --NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD------QGKKVYCMDVS--GNRLVVGTSDR 155 (323)
T ss_pred --cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc------cCceEEEEecc--CCEEEEeecCc
Confidence 334556799999999999999999999999999999998754444443 12367776664 67899999999
Q ss_pred cEEEEECCCCceeeEe--cCCCCCeEEEEECCCCCEEEEEeCCc-EE--EEEcCCC--ccceEEecCCC-------CCCe
Q 009763 380 LVKIWDVKSQANVAKF--DGHVGAVTAISFSENGYYLATAAHDG-VK--LWDLRKL--KNFRSFESSDS-------ETPT 445 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~-i~--iwd~~~~--~~~~~~~~~~~-------~~~i 445 (526)
.|.+||+++....... ..-...+.|+++.|++.-+++++-+| |. .+|.+.. ..-..|..|.. ..+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 9999999987544322 22345789999999988888888887 54 4554411 12223333321 3479
Q ss_pred eEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC-----CCc-------
Q 009763 446 NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-----DRN------- 511 (526)
Q Consensus 446 ~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----dg~------- 511 (526)
++++|+|-...|++|+.| +.+|+. .+.+.+..+... ...|.+++|+.||..||+++. ...
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~----~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~ 309 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDL----FNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASSYQYERADTPTHERNA 309 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccC----cchhhhhhccCC--CCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCc
Confidence 999999999999999999 889997 444455555443 567999999999999999874 223
Q ss_pred EEEeeCCCCCCC
Q 009763 512 LRVFGLPGNDAP 523 (526)
Q Consensus 512 v~iw~l~~~~~~ 523 (526)
|.|.++.+.+..
T Consensus 310 i~I~~l~d~e~~ 321 (323)
T KOG1036|consen 310 IFIRDLTDYETK 321 (323)
T ss_pred eEEEeccccccC
Confidence 777777666544
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.3e-28 Score=207.92 Aligned_cols=236 Identities=21% Similarity=0.366 Sum_probs=198.9
Q ss_pred CCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCC-CcEEEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 223 KPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 223 ~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
.+++..++|+++ .+.+++++.||++++||+.. ..++..++.|...|.++.|++ ++..++++|.|++|++|+....
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-- 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-- 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--
Confidence 568999999986 45888889999999999643 467889999999999999998 5667888899999999998776
Q ss_pred eeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS 377 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~ 377 (526)
..+.++.+|...|....|+| ..+.++++|.|+++++||++.......+. .|...+.|+.|+. +.+++++|+.
T Consensus 138 -~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 138 -NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-----AHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred -cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-----eccceeEeecccccCCcEEEecCC
Confidence 67888999999999999999 57899999999999999998764444454 5667899999998 8899999999
Q ss_pred CCcEEEEECCCC-ceeeEecCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCc-cceEEecCCCCCCeeEEEEcC-
Q 009763 378 EALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDH- 452 (526)
Q Consensus 378 dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s~- 452 (526)
|+.|++||+++- .++..+.+|.-.|..+.|||. ...|++++.|- ++|||..... .+.++..| ..-+..+.|++
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~ 289 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLF 289 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccc
Confidence 999999999875 578888999999999999996 56888999996 9999987544 34444433 55677888887
Q ss_pred CCCEEEEEeCC--eEEEE
Q 009763 453 SGSYLAVASAD--IRVYQ 468 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~ 468 (526)
++.+++..+.| +.||+
T Consensus 290 ~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 290 DPGQVASTGWDELLYVWN 307 (311)
T ss_pred cCceeeecccccceeeec
Confidence 56788888888 77776
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-27 Score=207.19 Aligned_cols=259 Identities=17% Similarity=0.315 Sum_probs=211.9
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC--EEEEEeCCCcEEEEeCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~ 296 (526)
+..|.++|++++.+ +.++|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 56789999999987 89999999999999999999999999999999999999998654 899999999999999754
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
+.++..+++|.+.|+.++.||.|++-++.+.|+.++.||+-+|+.-...... ...+.+.|+|.|.+++.+.
T Consensus 117 ---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~------~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 ---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK------NKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred ---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC------CcceeeEEcCCCCEEEEEe
Confidence 5899999999999999999999999999999999999999999876666532 2344599999999999887
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEE--cCC
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF--DHS 453 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~--s~~ 453 (526)
.+ .|-+|.+.+.+....+.. ...+.|+.|. ++..|++|.++. |.+||.....+...+..| ...|..+.+ .|.
T Consensus 188 ~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 188 RN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPE 262 (362)
T ss_pred cc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEecCC
Confidence 65 588999887766655543 2457788886 566788888887 999999998888888877 677888774 577
Q ss_pred CCEEEEEeCC--eEEEEEecccCcc-eeeeeecCCCCCcceEEEEE
Q 009763 454 GSYLAVASAD--IRVYQVASVKADW-NCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~ 496 (526)
+.||+++++| |+||+++...+.. ..+..+.. ..+++|+..
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~---~~RltCl~~ 305 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT---NVRLTCLRV 305 (362)
T ss_pred ceEEEEeccCceEEEEEccccccCCcceeEEeec---CCccceeee
Confidence 8999999999 9999986643321 22333222 455666654
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-26 Score=202.39 Aligned_cols=254 Identities=20% Similarity=0.357 Sum_probs=205.9
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEEC--CCe
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNT 333 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~ 333 (526)
+..+.+..-.+.|+++.|+++|.+|++++.|.++++||..++ ....++..+.-.|..+.|....+.++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 344555556788999999999999999999999999999887 677777777778889999776777777766 899
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCE
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (526)
|+..++.+.+.++.+. +|...|.+++.+|-+..+++++.|++|++||+|..++...+.... -..++|.|.|-+
T Consensus 82 IryLsl~dNkylRYF~-----GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLi 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFP-----GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLI 154 (311)
T ss_pred eEEEEeecCceEEEcC-----CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcE
Confidence 9999999999999886 888999999999988999999999999999999888777665433 345789999999
Q ss_pred EEEEeCCc-EEEEEcCCC--ccceEEecC-CCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCc
Q 009763 414 LATAAHDG-VKLWDLRKL--KNFRSFESS-DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTG 489 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~~--~~~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~ 489 (526)
+|++.... |++||+|.. .+...+... ......+.+.|+|+|++++.++....++-++. -.+....++..+...+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA--f~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA--FDGTVKSTFSGYPNAG 232 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc--cCCcEeeeEeeccCCC
Confidence 99998885 999999975 345555544 23567899999999999999988844443333 3344666666654343
Q ss_pred c-eEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 490 K-ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 490 ~-v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
. ..+.+|+||++++++|+.||+|++|++.++.
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 2 2567899999999999999999999997764
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-27 Score=231.00 Aligned_cols=241 Identities=18% Similarity=0.260 Sum_probs=212.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-cccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
+...+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.||.|..+|+..
T Consensus 212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 4444578999999999999999999999999999999999999998 99999999996 77899999999999999987
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 375 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 375 (526)
... ....+.+|...|..+.|++++.++++|+.|+.+.|||.........+. .|...|.+++|+| ...+||+|
T Consensus 290 ~~~--~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 290 SQH--VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----EHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred chh--hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----ccceeeeEeeeCCCccCceEEc
Confidence 642 222478999999999999999999999999999999997777777765 6788999999999 77889987
Q ss_pred e--CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC--c-EEEEEcCCCccceEEecCCCCCCeeEEEE
Q 009763 376 T--SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 376 ~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 450 (526)
+ .|+.|++||..+++.+..+. ..+.|.+|.|++..+-|+++... . |.||+..+.+.+..+..| ...|..+++
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~ 439 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLAL 439 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEE
Confidence 4 58999999999999988876 45789999999998777776544 3 999999998888888777 678999999
Q ss_pred cCCCCEEEEEeCC--eEEEEEe
Q 009763 451 DHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 451 s~~~~~l~~~~~d--i~v~~~~ 470 (526)
+|+|..+++|+.| +++|++-
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred CCCCCEEEEecccCcEEecccc
Confidence 9999999999998 9999873
No 88
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=208.76 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=220.7
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
..|+.|++.|.+||+|+.||.|.+||+.+...-+.+.+|..+|++++|+++|+.|+++|.|..|.+||+..+ .+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g---s~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG---SPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC---CceeE
Confidence 789999999999999999999999999999988899999999999999999999999999999999999887 45555
Q ss_pred cccCccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEE
Q 009763 306 LKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (526)
Q Consensus 306 ~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 384 (526)
+. ..++|+...|||... .+++.-.+..-.+.++..+... .+........+....+..|++.|+++++|...|.+.+|
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 54 678999999999553 3444434444555555543221 11111111122233455789999999999999999999
Q ss_pred ECCCCceeeEecCCC-CCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCc---------cceEEecCCCCCCeeEEEEcCC
Q 009763 385 DVKSQANVAKFDGHV-GAVTAISFSENGYYLATAAHDG-VKLWDLRKLK---------NFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 385 d~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~---------~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
|..+.+++..++... ..|..+.|+..|.+|+..+.|. |+.|+++... +.+.+...-....-.+++|+.+
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999999999887655 7899999999999999999998 9999987321 1122221112445678999999
Q ss_pred CCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 454 ~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
|.|+++++.. +.||.- ..+..++.+.+.. ......+.|+|-...+++- ..|.|+||.....
T Consensus 261 geYv~a~s~~aHaLYIWE~----~~GsLVKILhG~k-gE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEK----SIGSLVKILHGTK-GEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ccEEEeccccceeEEEEec----CCcceeeeecCCc-hhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 9999999876 888885 5677777776652 2467889999988888777 6899999987543
No 89
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=9.2e-28 Score=233.98 Aligned_cols=257 Identities=24% Similarity=0.355 Sum_probs=225.9
Q ss_pred HHHhcccccceeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe
Q 009763 205 DALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 284 (526)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 284 (526)
+.++-|.......+..-..+.+.+..|.|.++++++|...|.+.+||+.+...+.+++.|.+.|++++.+||+..+++||
T Consensus 394 ~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence 34455555444445555556899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCC----Cceeee------EecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC
Q 009763 285 ADKTVRVWQGSED----GNYDCK------HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 354 (526)
Q Consensus 285 ~dg~i~iwd~~~~----~~~~~~------~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 354 (526)
.|.+|++||+.-. +..+.+ +++ .....|.|+.++|||++|+++--|.++++|-+++-+....+.
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY----- 547 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY----- 547 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-----
Confidence 9999999996421 110111 112 245689999999999999999999999999999988777776
Q ss_pred CCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccc
Q 009763 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF 433 (526)
Q Consensus 355 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~ 433 (526)
+|.-+|.|+.++||++++++|+.|..|++|-+.-|.+-..+-+|...|.++.|.|..+.+++++.|+ |+-||-.+...+
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 7888999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
+.+..| ...|++++.+|+|.|+++++.| +++|.-
T Consensus 628 q~L~~H--~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 628 QKLDGH--HSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeeccc--hheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 999887 6789999999999999999998 999986
No 90
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.8e-27 Score=204.70 Aligned_cols=271 Identities=18% Similarity=0.264 Sum_probs=210.8
Q ss_pred cccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCC-CcEE-EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 009763 218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~-~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 294 (526)
+.....+.|.+++||| ...++++|+.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 4445567899999999 456777999999999999886 3333 345579999999999999999999999999999999
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCC--EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
.++ ....+..|.++|.++.|-+... .|++||.|++|++||.+....+.++.. ++.++++..- ..++
T Consensus 102 ~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------PeRvYa~Dv~--~pm~ 169 (347)
T KOG0647|consen 102 ASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------PERVYAADVL--YPMA 169 (347)
T ss_pred cCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec------cceeeehhcc--Ccee
Confidence 985 4455678999999999987655 899999999999999999998888863 2456666553 4478
Q ss_pred EEEeCCCcEEEEECCCCceee-Eec-CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC--ccceEEecCCC------
Q 009763 373 GTGTSEALVKIWDVKSQANVA-KFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDS------ 441 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~------ 441 (526)
+++..+..|.+|+++++.... ... .-.-.+.|++..++....+.|+-.| +.|..+..+ +.-..|+.|..
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 888899999999997764322 221 1234688999888888789999888 777777654 44445555542
Q ss_pred -CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEE
Q 009763 442 -ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG 506 (526)
Q Consensus 442 -~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 506 (526)
-..|++|+|+|....|+++++| ..+||-+ ....+++...+ ..+|++..|+.+|.++|-+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd----ar~kLk~s~~~--~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD----ARTKLKTSETH--PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecch----hhhhhhccCcC--CCccceeEecCCCCEEEEE
Confidence 2357899999999999999988 7778753 23344444444 8899999999999987654
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=9.3e-27 Score=212.55 Aligned_cols=237 Identities=25% Similarity=0.371 Sum_probs=207.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+..++|++++|.+++..+++++.|+.+++|++.+.+...++.||++.|+++.|......+++|+.|.+|++||+...
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~- 293 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA- 293 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-
Confidence 3445678999999999999999999999999999999999999999999999999877767999999999999999875
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.|..++. ..+.+..|..+ ...+++|-.|++|++||+++......+... +.|+++..+++|..+.+.+.|
T Consensus 294 --~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g------g~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 294 --YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG------GRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred --heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC------cceeeEeeccCCeEEeeecCC
Confidence 6766654 34556677665 667889999999999999999998888643 479999999999999999999
Q ss_pred CcEEEEECCCCceeeEecCC----CCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 379 ALVKIWDVKSQANVAKFDGH----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
.++.++|+++......+... ....+.+.|||++.|+++|+.|| |+||++.++++...+........|+++.|+|.
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 99999999999888777532 23588999999999999999999 99999999999988887765557999999999
Q ss_pred CCEEEEEeCC--eEEE
Q 009763 454 GSYLAVASAD--IRVY 467 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~ 467 (526)
|.+|++++.+ +.+|
T Consensus 443 G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 GSGLLSADKQKAVTLW 458 (459)
T ss_pred CchhhcccCCcceEec
Confidence 9999999988 7776
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.3e-28 Score=207.30 Aligned_cols=243 Identities=22% Similarity=0.311 Sum_probs=216.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
-..+|++.|++..++.+...-|+++.|-+-+|||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..+||||++..
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p 132 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP 132 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence 356799999999999888899999999999999999999999987 8889999999999999999999999999999875
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
. .+...+.+|.+.|..+.|....+.|++++.|++|++||.+++..+..+.. +.+|+++.++++|.+|.++.
T Consensus 133 ~--App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia~- 203 (334)
T KOG0278|consen 133 K--APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIAY- 203 (334)
T ss_pred C--CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEec-
Confidence 4 45667789999999999998899999999999999999999999998863 36799999999999887764
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
.+.|.+||..+...++.++. ...|.+.+.+|+...+++|+.|. ++.||..++..+..+. ..+.++|.++.|+|+|..
T Consensus 204 gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCce
Confidence 57899999999998888874 46799999999999999999998 9999999999888762 234789999999999999
Q ss_pred EEEEeCC--eEEEEEecc
Q 009763 457 LAVASAD--IRVYQVASV 472 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~ 472 (526)
.++|+.| +++|.....
T Consensus 282 yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eeccCCCceEEEEEecCC
Confidence 9999999 999998543
No 93
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.8e-27 Score=211.30 Aligned_cols=247 Identities=23% Similarity=0.394 Sum_probs=207.3
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCC---CEEEEEECCCeEEEEeC
Q 009763 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN---KYFVTASLDNTWCFYDL 339 (526)
Q Consensus 263 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~l~s~s~dg~i~iwd~ 339 (526)
.|...|.++... ++++++|++||.+++||... ++...+.+|.++|..++|.-.+ ..|++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388888888876 77899999999999999876 6888889999999999885433 35999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC-------------------------CCceeeE
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-------------------------SQANVAK 394 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-------------------------~~~~~~~ 394 (526)
+.+......... ..+|...|.++...++|..+++|+.|..|.||+.. ++.++..
T Consensus 177 ~~~~~~~~~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 177 NVGENKVKALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred cCchhhhhHHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 888765443322 23889999999999999999999999999999921 1235667
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEec
Q 009763 395 FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 471 (526)
Q Consensus 395 ~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~ 471 (526)
+.+|..+|.++.|++ ...+++++.|. |+.||+.++.....+.. ....+++..+|...+|++|+.| +++||...
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 789999999999998 66788888887 99999999999888776 5689999999999999999999 99999866
Q ss_pred ccCcceeeeeecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEeeCCCCCCC
Q 009763 472 VKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFGLPGNDAP 523 (526)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~l~~~~~~ 523 (526)
.. .-....+|.+| .+.|.++.|+|. ...|++|+.||++++||+.+..+|
T Consensus 332 ~~-gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 332 GD-GSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP 381 (423)
T ss_pred CC-CceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc
Confidence 52 23444566666 779999999995 456899999999999999988755
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=209.21 Aligned_cols=255 Identities=24% Similarity=0.415 Sum_probs=204.9
Q ss_pred EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC---------------CCceeeeEecccCccceEEEEEecCCC
Q 009763 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE---------------DGNYDCKHTLKDHTAEVQAVTVHATNK 323 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~~p~~~ 323 (526)
..+..|.+++.+.+|++||.++++|+.|..|+|.|++. ......++++..|..+|+++.|||...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45667999999999999999999999999999999762 111356888999999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe---cCCCC
Q 009763 324 YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVG 400 (526)
Q Consensus 324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~ 400 (526)
.|++|+.|++|++||+........++.. ....+|.++.|||.|.+|++|+.-..+++||+.+.++...- ..|.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 9999999999999999765433222211 22358999999999999999999999999999988766544 45889
Q ss_pred CeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcce
Q 009763 401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN 477 (526)
Q Consensus 401 ~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~ 477 (526)
.|+++.++++|++.++++.|| |++||--+++++.++.....+..|.+..|..+|+|+++.+.| +++|.+ ....
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi----~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI----STGR 338 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee----cCCc
Confidence 999999999999999999999 999999999999998876667899999999999999999999 999999 5566
Q ss_pred eeeeecCCCCCc---ceEEEEEcCCCCEEEEEe-CCCcEEEeeCCCC
Q 009763 478 CIKTFPDLSGTG---KATCVKFGPDAKYIAVGS-MDRNLRVFGLPGN 520 (526)
Q Consensus 478 ~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~-~dg~v~iw~l~~~ 520 (526)
.+..+.+-...+ .-+...|+....|++.-. ..+.+.-||....
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 666665532111 123445666656655443 2356666766543
No 95
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=4e-27 Score=219.60 Aligned_cols=279 Identities=18% Similarity=0.332 Sum_probs=227.8
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEec--ccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~---~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
.|..-|.++.++...+.+.||+ .|.|+|||+... ..+..+. .....|.++..+|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 3666688888998899999998 678999998642 2233333 245678999999999999999999999999997
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
.... .....+..-.-....++.+||.+..++++.||.|.|||+.+...+..+. +|...+.|+.+++||..|-+|
T Consensus 496 apTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----GhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 496 APTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred CCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-----CCCCCceeEEecCCCceeecC
Confidence 7421 2333333334467788999999999999999999999999998888886 788899999999999999999
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
+-|.+|+.||+++++.+.... ..+.|.++.++|++.||++|-.++ +.|....+.+. +..+.|...|.++.|.+.|
T Consensus 570 GlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k---yqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK---YQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc---eeecccccEEEEEEecccC
Confidence 999999999999998776654 457899999999999999999887 88877665433 3444557899999999999
Q ss_pred CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
+++++.+.| +..|... -+..+..... ...|.++.+|.|.+++++|+.|..-.||.+
T Consensus 646 kwfvStGkDnlLnawrtP----yGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTP----YGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeecCchhhhhhccCc----cccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999998888 8899863 2333333332 678999999999999999999998888875
No 96
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8.5e-26 Score=227.86 Aligned_cols=228 Identities=13% Similarity=0.200 Sum_probs=177.7
Q ss_pred cccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCc--------EEEEecccccceeEEEEecCCCE-EEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQ--------IVTTLSGHSKKVTSVKFVTEGDL-FLTGSADK 287 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~~~--------~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg 287 (526)
...+|.+.|.+++|+|+ +++|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |++++.|+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 35678999999999997 7899999999999999997542 34567899999999999998875 57899999
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCe-----eE
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY-----TS 362 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~ 362 (526)
+|+|||+.++ .....+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+. +|...+ ..
T Consensus 149 tIrIWDl~tg---~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-----gH~g~~~s~~v~~ 219 (568)
T PTZ00420 149 FVNIWDIENE---KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-----IHDGGKNTKNIWI 219 (568)
T ss_pred eEEEEECCCC---cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-----cccCCceeEEEEe
Confidence 9999999886 3444444 56789999999999999999999999999999998887775 343333 33
Q ss_pred EEEccCCcEEEEEeCCC----cEEEEECCC-CceeeEec--CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccce
Q 009763 363 AAFHPDGLILGTGTSEA----LVKIWDVKS-QANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 434 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~dg----~i~iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~ 434 (526)
..|++++.+|++++.|+ .|++||++. .+++..+. .+.+.+......++|.++++|+.|+ |++|++..+. +.
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~ 298 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IR 298 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EE
Confidence 34568888888877764 799999995 55555543 2334444444556689999999998 9999998764 33
Q ss_pred EEecCCCCCCeeEEEEcCCCC
Q 009763 435 SFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~ 455 (526)
.+....+..+...++|.|...
T Consensus 299 ~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 299 KVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eecccccCCCccceEEccccc
Confidence 444444467788999999643
No 97
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.5e-26 Score=229.90 Aligned_cols=236 Identities=24% Similarity=0.472 Sum_probs=210.6
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.++|.+++|...++++++|+.|.++++||..+|.+...+.+|.+.|.++.. .+..+++|+.|.+|++|+++++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~- 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG- 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCc-
Confidence 5689999999999988899999999999999999999999999999999999977 4567888999999999999976
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.++..+.+|.++|+++..+ +.++++|+.||+|++||+.+++++..+. +|...|+++.+... ..+++|+.|
T Consensus 322 --~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-----gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 322 --ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-----GHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred --ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-----CCcceEEEEEecCc-ceEEeeeec
Confidence 7888888899999999997 8999999999999999999999999987 68889999988765 899999999
Q ss_pred CcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 379 ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 379 g~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
+.|++||+++. +++..+.+|..-+..+.+ .+++|++++.|+ |++||...+++.+.+... +...+..+.+. ...
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEE 466 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cce
Confidence 99999999999 999999999988877766 677999999999 999999999999998874 35677777776 456
Q ss_pred EEEEeCC--eEEEEEecc
Q 009763 457 LAVASAD--IRVYQVASV 472 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~ 472 (526)
+++++.+ +++|++...
T Consensus 467 il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEEecCCeeEEEecccC
Confidence 6666666 999998443
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3e-25 Score=187.19 Aligned_cols=251 Identities=19% Similarity=0.307 Sum_probs=202.9
Q ss_pred eeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE-----EEEecccccceeEEEEecC----CCEEEEEeC
Q 009763 215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTE----GDLFLTGSA 285 (526)
Q Consensus 215 ~~~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~~----~~~l~s~s~ 285 (526)
...-.+.|++.|.|.+|+|+|.+|++|+.|++|++.-.+.... -..+..|.+.|..++|..+ +.+|++++.
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 3344678999999999999999999999999999876543222 2356679999999999743 456777664
Q ss_pred -CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC--CCCCCeeE
Q 009763 286 -DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTS 362 (526)
Q Consensus 286 -dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~ 362 (526)
|..|.+-|...+ +..+.+.+|++.|.++- +-+|-.|++|+.|.+|++||++-..++..+...... -..+.|.+
T Consensus 161 gdc~iy~tdc~~g---~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 161 GDCKIYITDCGRG---QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CcceEEEeecCCC---CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 566677677665 67788899999998873 446899999999999999999999888887532111 12367999
Q ss_pred EEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC--ccceEEecC
Q 009763 363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESS 439 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~ 439 (526)
+++.|.|++|++|..|....+||++.+..++.+..|...|.|+.|+|...+|++++.|. |++-|+... ..+......
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999997 999998642 122222233
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 440 DSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
.|...+..+.|+|..--+++.+.| ..+|.+
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEecc
Confidence 346778889999998888888887 888875
No 99
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=6.9e-26 Score=195.77 Aligned_cols=231 Identities=22% Similarity=0.360 Sum_probs=202.5
Q ss_pred EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 009763 260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (526)
Q Consensus 260 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (526)
.++||+.+++.+.|+.+|++|++++.|.+..||-..++ +.+.++.+|.+.|+|+..+.+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 46789999999999999999999999999999987665 788999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-----CCcEEEEECC-------CCceeeEecCCCCCeEEEEE
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----EALVKIWDVK-------SQANVAKFDGHVGAVTAISF 407 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~ 407 (526)
++|+.+..+.. ..+|..+.|+++|++++.... .+.|.++|++ +.++...+..+.+.++..-|
T Consensus 82 ~tGk~la~~k~------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 82 ETGKQLATWKT------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred CCCcEEEEeec------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 99999999863 368999999999998887654 4689999998 44567778778899999999
Q ss_pred CCCCCEEEEEeCCc-EEEEEcCCCccc-eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 408 SENGYYLATAAHDG-VKLWDLRKLKNF-RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 408 s~~~~~l~~~~~d~-i~iwd~~~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
.|-+.+|++|..+| |.+||++++..+ .....| ...|+.++++++..++++++.| -++||+ .....++++.
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~d~T~FiT~s~Dttakl~D~----~tl~v~Kty~ 229 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEH--SSKINDLQFSRDRTYFITGSKDTTAKLVDV----RTLEVLKTYT 229 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhh--ccccccccccCCcceEEecccCccceeeec----cceeeEEEee
Confidence 99999999999999 999999997554 333444 5699999999999999999999 999998 6777888876
Q ss_pred CCCCCcceEEEEEcCCCCEEEEEeC
Q 009763 484 DLSGTGKATCVKFGPDAKYIAVGSM 508 (526)
Q Consensus 484 ~~~~~~~v~~~~~s~~~~~l~s~~~ 508 (526)
. ..+|++.+++|-...++.|+.
T Consensus 230 t---e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 230 T---ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred e---cccccceecccccceEEecCC
Confidence 5 678999999997777776653
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-27 Score=199.13 Aligned_cols=249 Identities=21% Similarity=0.320 Sum_probs=202.1
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEecccccceeEEEEec--CCCEEEEEeCCCcEEE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRV 291 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~---~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~i 291 (526)
.+...|++.|..+....-|..|||+++|++|+||...++ +++.++.||.++|+.++|.. -|.+|++++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 345678888999988888999999999999999998754 56889999999999999964 7999999999999999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCeeEEEEccC
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPD 368 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 368 (526)
|.-.++ .+........|...|++++|.|. |-.|++++.||.|.+.+.+.. ....... ...|.-.|++++|.|.
T Consensus 85 Wke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki---~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 85 WKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI---VFAHEIGVNSVSWAPA 160 (299)
T ss_pred EecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh---hhccccccceeeecCc
Confidence 997664 67777778899999999999884 568999999999999998765 2211111 3367788999999995
Q ss_pred ---C-----------cEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECCCC----CEEEEEeCCc-EEEEEc
Q 009763 369 ---G-----------LILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKLWDL 427 (526)
Q Consensus 369 ---~-----------~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~----~~l~~~~~d~-i~iwd~ 427 (526)
| +.|++|+.|..|+||+..++. .-.++.+|.+.|+.++|.|.- .+|++++.|+ |.||-.
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 4 569999999999999998763 344588999999999999963 5899999999 999977
Q ss_pred CCCc-cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 428 RKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 428 ~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
+... .-..-..+.....+..+.|+..|.+|++++.| +.+|.-
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 6321 11111122235679999999999999998888 888864
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.4e-26 Score=212.83 Aligned_cols=245 Identities=20% Similarity=0.377 Sum_probs=198.6
Q ss_pred cCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCC----------cEEEEecccccceeEEEEecCC-CEEEEEeCCC
Q 009763 220 KTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG----------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADK 287 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~----------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg 287 (526)
..|.+.|+.+.+-|+. .++|+++..+.|.|||.... .+-..+.+|.+.=.+++|++.. -.|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4578899999999965 57788889999999997542 1223788999888889999843 4699999999
Q ss_pred cEEEEeCCCCCc----eeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCC--eEEEEeecCCCCCCCCCe
Q 009763 288 TVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGY 360 (526)
Q Consensus 288 ~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v 360 (526)
+|++||+..... ......+.+|...|..++|++ +...|++++.|+.+.|||++++ +.... ...|...+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-----~~ah~~~v 275 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-----VKAHSAEV 275 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc-----ccccCCce
Confidence 999999976543 456677889999999999999 4568899999999999999963 22222 34788999
Q ss_pred eEEEEcc-CCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccce--
Q 009763 361 TSAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFR-- 434 (526)
Q Consensus 361 ~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~-- 434 (526)
.|++|+| ++.+||+|+.|++|.+||+|+. +++.++.+|...|.++.|+|+ ...|++++.|+ +.+||+..-....
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999999 7899999999999999999985 578899999999999999996 56788888888 9999997533222
Q ss_pred ----------EEecCCCCCCeeEEEEcCCCCEEEEEeC-C--eEEEEE
Q 009763 435 ----------SFESSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQV 469 (526)
Q Consensus 435 ----------~~~~~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~ 469 (526)
.|.-.+|...|..+.|+|+..+++++-. | +.||.+
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 2444456788999999999988776544 4 999987
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=5.5e-26 Score=231.22 Aligned_cols=249 Identities=17% Similarity=0.270 Sum_probs=208.9
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------------------CcEEEEecccccceeEEEEecCCCE
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGDL 279 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~------------------~~~~~~~~~h~~~V~~l~~~~~~~~ 279 (526)
.+..|.+.|+|+.|++||.+||+|++|+.|.||.... .+.+..+.+|.+.|..++|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 3567899999999999999999999999999998762 1356788899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC-CCCCC
Q 009763 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-DGRPE 358 (526)
Q Consensus 280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~ 358 (526)
|++++.|++|.|||..+. ..+..+.+|.+.|..+.|.|-|+||++-+.|++|++|++.+......+..... .....
T Consensus 144 lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred EEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 999999999999998775 78899999999999999999999999999999999999887666666653211 12234
Q ss_pred CeeEEEEccCCcEEEEEeC----CCcEEEEECCCCceeeEecCCCCCeEEEEECCC-----CC------------EEEEE
Q 009763 359 GYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-----GY------------YLATA 417 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~------------~l~~~ 417 (526)
.+..+.|+|||.+|++... -..+.|.+-.+.+.-..|-+|.+++.++.|+|. .. .+++|
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 5788999999999998643 246889998888888899999999999999981 11 67889
Q ss_pred eCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 418 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
+.|+ |.||.....+++..+.... ...|..++|+|||..|++++.| +.++.+.
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cCCccEEEEecCCCCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 9998 9999997777765544322 5789999999999999999999 5555553
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-27 Score=228.40 Aligned_cols=289 Identities=19% Similarity=0.293 Sum_probs=225.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeccc---ccceeEEEEec-CCCEEEEEeCCCcEEEEeC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGH---SKKVTSVKFVT-EGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~----~~~~~~~~h---~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~ 294 (526)
+..+.+|..+++-..|+.++. ..+.||..... ++...+.+. ...+..+.|.. +.++|++++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 345778888888888887774 46788876542 122222211 12356678875 5678999999999999999
Q ss_pred CCCCceeeeEecccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLIL 372 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 372 (526)
.....-+.+..|..|+..++++.||+. .++|++||.||+|++||++..+...++. +....|..+.|+| .+..|
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-----~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-----SNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----ccchhhhceeeccCCCceE
Confidence 874333566678899999999999985 5689999999999999999998887776 3457899999999 78999
Q ss_pred EEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEE
Q 009763 373 GTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 450 (526)
+++...|.+++||+|.. ++...+..|.++|.|+.|+|++.+|++|+.|+ |+|||....+......... ..++.++.|
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkW 271 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKW 271 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeeeeee
Confidence 99999999999999976 56777889999999999999999999999998 9999998655433332221 578999999
Q ss_pred cCCCCEEEEEeC---C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEeeCCCCCCC
Q 009763 451 DHSGSYLAVASA---D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGLPGNDAP 523 (526)
Q Consensus 451 s~~~~~l~~~~~---d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~l~~~~~~ 523 (526)
-|...+.++.+. | |+||++. ..+.+..++..| ...++.++|.. |...|.+++.||.|..-.+.+...|
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvr---RPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVR---RPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred ccCccchhhhhhccccceEEEEeec---cccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 998776544322 2 9999993 556666777765 77899999965 5678999999999877666655443
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=206.62 Aligned_cols=244 Identities=22% Similarity=0.330 Sum_probs=205.5
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
..+.++|.-.|+.+.|+++...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.|++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 34678999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred CCCceeeeEecc--cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 296 EDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 296 ~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
++. ++.... ...-.+++.+|||||.+|.+|..||.++|||+.++..+..|. +|..+|..++|+.+|.+|+
T Consensus 334 ~g~---~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-----ght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 334 SGS---QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-----GHTGPVKAISFSENGYWLA 405 (506)
T ss_pred CCc---EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----CCCCceeEEEeccCceEEE
Confidence 874 333322 223468999999999999999999999999999988766664 7889999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeEecCC-CCCeEEEEECCCCCEEEEEeCCc-EEEEEcCC--CccceEEecCCCCCCeeEEE
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG-VKLWDLRK--LKNFRSFESSDSETPTNSVD 449 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~--~~~~~~~~~~~~~~~i~~i~ 449 (526)
++..|+.|++||+|..+...++... ...+.++.|.+.|.+|+.++.+- |++++-.+ ...+..+.. +.+..+.+.
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~--~sg~st~v~ 483 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD--HSGLSTGVR 483 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh--cccccceee
Confidence 9999999999999998887777543 23799999999999999996663 55555333 334444433 356789999
Q ss_pred EcCCCCEEEEEeCC--eEEEEE
Q 009763 450 FDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 450 ~s~~~~~l~~~~~d--i~v~~~ 469 (526)
|....+++++++.+ +++|.+
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 99999999999988 666643
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=219.52 Aligned_cols=291 Identities=22% Similarity=0.349 Sum_probs=242.0
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~ 297 (526)
...+.+.|+++.-+|--+.+|.|..+|+|.++|++.++.+.+++...+.|++++|..||+ .|++|+..|.+.+||++..
T Consensus 198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred ecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC
Confidence 345668999999999999999999999999999999999999995569999999999987 5777778899999999886
Q ss_pred CceeeeEec-ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-----------------EEEe-------ecCC
Q 009763 298 GNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-----------------LTQV-------SDAG 352 (526)
Q Consensus 298 ~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-----------------~~~~-------~~~~ 352 (526)
+.+..+ ..|.+.|....|.|....+++++.|..+++|=.+++.- +..+ ....
T Consensus 278 ---kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~ 354 (910)
T KOG1539|consen 278 ---KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAK 354 (910)
T ss_pred ---eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecc
Confidence 333333 37889999999999999999999999888775442110 0000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 009763 353 -------------------------------------------------------------------------------- 352 (526)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (526)
T Consensus 355 ~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~ 434 (910)
T KOG1539|consen 355 QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS 434 (910)
T ss_pred cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc
Confidence
Q ss_pred ---------CCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe---cCCCCCeEEEEECCCCCEEEEEeCC
Q 009763 353 ---------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 353 ---------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.......+++++.++-|++.+.|+..|.|-+|++.+|-...++ ..|.++|++++...-++.+++++.+
T Consensus 435 G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 435 GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD 514 (910)
T ss_pred ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCc
Confidence 0001145678999999999999999999999999999888888 4799999999998888999999999
Q ss_pred c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 421 ~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
| +++||+.+......+.. ...+..+..+.....++.+.++ |+++|. .....++.|.+| .+.|++++||
T Consensus 515 Gilkfw~f~~k~l~~~l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~----~t~kvvR~f~gh--~nritd~~FS 585 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDV----VTRKVVREFWGH--GNRITDMTFS 585 (910)
T ss_pred ceEEEEecCCcceeeeecc---CCCcceeeeeehhhhhhhhcCceeEEEEEc----hhhhhhHHhhcc--ccceeeeEeC
Confidence 9 99999999887777766 5678899999989999999888 888887 566777888886 8899999999
Q ss_pred CCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 498 PDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 498 ~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|||++|++++.|++|++||++.+.
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcc
Confidence 999999999999999999998764
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-25 Score=216.77 Aligned_cols=277 Identities=18% Similarity=0.335 Sum_probs=227.7
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE--EEecccccceeE-EEEec-CCCEEEEEeCCCcEEEE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV--TTLSGHSKKVTS-VKFVT-EGDLFLTGSADKTVRVW 292 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~--~~~~~h~~~V~~-l~~~~-~~~~l~s~s~dg~i~iw 292 (526)
....+|+..|..+++.+ +..+++++.||++++|+-..++.+ ..+.+|.+-|.+ ++|.+ ++-.+++|+.|++|.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 34678888898888764 558999999999999997655443 457788888877 88876 44569999999999999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
..... .++.++.+|...|.+++...++. +++||.|.++++|-.... ... ..+|...|.++..-|++ .+
T Consensus 87 ~~~~~---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~-----l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 87 KLSQA---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYS-----LQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred ecCCC---CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcc-----cCCcchheeeeeecCCC-cE
Confidence 98776 78899999999999999876776 999999999999987543 223 34888999999999988 89
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
++|+.|.+|++|.- ++.+.+|.+|...|..+++-+++ .|++++.|| |++|++ ++..+.....| ..-+.++...
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~ 228 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMA 228 (745)
T ss_pred EeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEec
Confidence 99999999999974 78899999999999999999765 466777788 999999 67777777665 7789999988
Q ss_pred CCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 452 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+++..++++++| ++||..+ .+...+... ...|.++.+-++|. +++|+.||.||||..+...
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~------e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD------ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCCCeEEEecCCceEEEeecC------ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 899999999999 9999862 455544432 44788888888887 6778889999999987543
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-26 Score=195.22 Aligned_cols=252 Identities=17% Similarity=0.219 Sum_probs=202.5
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEe-c-CCCEEEEEECCCeEEEEeC
Q 009763 262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH-A-TNKYFVTASLDNTWCFYDL 339 (526)
Q Consensus 262 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-p-~~~~l~s~s~dg~i~iwd~ 339 (526)
..|...|.++...-.|+.|+|++.|++|+|+.+...+....+.++.+|.++|+.++|. | .|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889888887789999999999999999998877668889999999999999994 4 7899999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEcc--CCcEEEEEeCCCcEEEEECCCC---ceeeEecCCCCCeEEEEECCC---C
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSEN---G 411 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~---~ 411 (526)
++++...... ...|...|++++|.| -|.+|++++.||.|.|++.++. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 88 ENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred CCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 8885444333 347888999999999 5689999999999999998765 122334568889999999995 4
Q ss_pred -----------CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC----CEEEEEeCC--eEEEEEeccc
Q 009763 412 -----------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG----SYLAVASAD--IRVYQVASVK 473 (526)
Q Consensus 412 -----------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~----~~l~~~~~d--i~v~~~~~~~ 473 (526)
+.|++|+.|. |+||+.....-...-....|...|+.++|.|.- .+|++++.| +.||..+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 6699999998 999999886433322233457899999999964 678999999 7777765433
Q ss_pred CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 474 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
..|+... +.. ....+..+.||..|++|++++.|+.|.+|.-+.
T Consensus 245 e~wk~tl-l~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 EPWKKTL-LEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred Ccccccc-ccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 4443221 111 256799999999999999999999999997554
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.3e-25 Score=219.69 Aligned_cols=278 Identities=19% Similarity=0.265 Sum_probs=224.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
+.-.|..+-+.|+|.|+|++|++++.||.|++|+..+. +.-.++..+...|.+++- ++.+|++|+.+++|.+|.+..
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 44578889999999999999999999999999987654 333344447777888776 556899999999999999987
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
+. .-..+...+-++++++|+.+|++++.||.|-.|++.++.+......+. +|..+|.++.|+|++++||+.+
T Consensus 86 ~~---~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-----gh~apVl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 86 GE---EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-----GHDAPVLQLSYDPKGNFLAVSS 157 (933)
T ss_pred CC---ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-----ccCCceeeeeEcCCCCEEEEEe
Confidence 63 222333456789999999999999999999999999999988877776 7889999999999999999999
Q ss_pred CCCcEEEEECCCCceeeEecC--------CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeE
Q 009763 377 SEALVKIWDVKSQANVAKFDG--------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
.||.|++||+.++....++.+ ....+..++|+|+|..|+....++ |++|+...+.....+....+...+..
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 999999999999877666543 134567899999965555555555 99999999998888877666666999
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 448 VDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
+.|+|+|+|||+++-+ |.||++++ ...|.....|++++|.|+++.+-.-...|...+|
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t----------~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT----------HERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc----------chhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999998 99999843 1113336689999999998876555555554443
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=7.6e-24 Score=204.19 Aligned_cols=268 Identities=16% Similarity=0.218 Sum_probs=201.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
++++++++.|+.+++||..+++.+..+..+.. +.+++|+|++..+ ++++.++.|++||..++ +....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCCC-c
Confidence 35788999999999999999998888886644 6789999999876 56778899999999875 44444544433 5
Q ss_pred EEEEEecCCCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC-cEEEEECCCCce
Q 009763 314 QAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVKSQAN 391 (526)
Q Consensus 314 ~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~i~iwd~~~~~~ 391 (526)
..+.|+|+++.++++ +.++.+.+||+.++..+..+.. ...+.+++|+|+|.+++++..++ .+.+||..+++.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 678999999977655 5689999999999877766642 12467899999999999988765 467789988876
Q ss_pred eeEecCCCCCeEEEEECCCCCEEEEEe-CCc-EEEEEcCCCccceEEecCC-----CCCCeeEEEEcCCCCEEEEEe--C
Q 009763 392 VAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSD-----SETPTNSVDFDHSGSYLAVAS--A 462 (526)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~-----~~~~i~~i~~s~~~~~l~~~~--~ 462 (526)
...+.. ...+.+++|+|+|.+|++++ .++ |++||+.+++....+.... .......+.|+|++++++++. .
T Consensus 150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 150 VDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 655432 23567899999999886554 456 9999999988766654321 112345688999999866543 3
Q ss_pred C-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEE-eCCCcEEEeeCCCCC
Q 009763 463 D-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG-SMDRNLRVFGLPGND 521 (526)
Q Consensus 463 d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~l~~~~ 521 (526)
+ +.+|+. ..+.....+.. ...+.+++|+|+|++|+++ +.+|.|++||+.+.+
T Consensus 229 ~~i~v~d~----~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 229 NRVAVVDA----KTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CeEEEEEC----CCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3 889987 33444443322 3468899999999999886 468999999998765
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=217.51 Aligned_cols=286 Identities=20% Similarity=0.242 Sum_probs=227.9
Q ss_pred CCCCCeEEEEecCC-----------CCEEEEEeCCCcEEEEeCCCCcEEEEe----------------------------
Q 009763 221 TSKPGIVSLDIHYS-----------KDVIATGGVDTNAVLFDRPSGQIVTTL---------------------------- 261 (526)
Q Consensus 221 ~~~~~I~~~~~s~~-----------~~~l~t~~~dg~v~vwd~~~~~~~~~~---------------------------- 261 (526)
.|...|+.+..-|- ...++|++.|++|++||+..+..-..+
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 35566777665441 236899999999999998752110000
Q ss_pred ---------cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec---CCCEEEEEE
Q 009763 262 ---------SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA---TNKYFVTAS 329 (526)
Q Consensus 262 ---------~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~l~s~s 329 (526)
-+....+.+++.+|+|++|++|..-|+++||++... .....+..|...|.|+.|+. ..++|++++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l---~~~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL---EYTCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh---hhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence 012346899999999999999999999999999875 55666788999999999974 357899999
Q ss_pred CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC--cEEEEEeCCCcEEEEECCCCceeeEecC-----CCCCe
Q 009763 330 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LILGTGTSEALVKIWDVKSQANVAKFDG-----HVGAV 402 (526)
Q Consensus 330 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----~~~~i 402 (526)
.|..|.+||+...-.+... ..+|...|+++.|..+| ..+++++.|..|.+--.+.......|.. ....+
T Consensus 524 rdRlIHV~Dv~rny~l~qt----ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDLVQT----LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred CCceEEEEecccccchhhh----hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 9999999999766544333 34788999999999877 6788888888776543332111122221 23578
Q ss_pred EEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC-CCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCccee
Q 009763 403 TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC 478 (526)
Q Consensus 403 ~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~ 478 (526)
..++..|+.+++++++.|. |+|||+.+++..+.|+... +.+....+..+|+|.|+++.+.| +.+||+ ...++
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df----~sgEc 675 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF----VSGEC 675 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe----ccchh
Confidence 8999999999999999998 9999999999999998754 35778899999999999999998 999998 67788
Q ss_pred eeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 479 IKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 479 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+....+| ...|+.+.|.+|.+.|++.+.||.|.||.++.
T Consensus 676 vA~m~GH--sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 676 VAQMTGH--SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhcCc--chheeeeeecccchhheeecCCceEEEEECch
Confidence 8888886 88999999999999999999999999999975
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=203.41 Aligned_cols=292 Identities=19% Similarity=0.354 Sum_probs=223.7
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC---
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED--- 297 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--- 297 (526)
..+..|.|++|.++|+ ++||.++|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|+.|..||-.-.
T Consensus 244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccc
Confidence 3456799999999887 67899999999999988887777779999999999999997 455999999999982100
Q ss_pred ------------------C--------c--------eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 009763 298 ------------------G--------N--------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 298 ------------------~--------~--------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~ 343 (526)
. + -.......+|....+.++.+|+.+.+++++.|+.+++|+ ..+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence 0 0 001122357889999999999999999999999999999 344
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-E
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-V 422 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i 422 (526)
....... ..++.|+.|+|.| .++.|+..|...+.|..+...+..-. ...+++++.|+|+|.+|++|+.|+ |
T Consensus 400 ~~wt~~~------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 400 LEWTKII------EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred eeEEEEe------cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeE
Confidence 4333321 2578999999999 99999999999999999865554444 378999999999999999999999 9
Q ss_pred EEEEcCCCcc-ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccC-------cc---eeeeeec--CCCC
Q 009763 423 KLWDLRKLKN-FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKA-------DW---NCIKTFP--DLSG 487 (526)
Q Consensus 423 ~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~-------~~---~~~~~~~--~~~~ 487 (526)
+||-+..... ....... +..+|+.+.|++|++||.+-+.| +-.|....... .| .+..-|. +..+
T Consensus 472 yiy~Vs~~g~~y~r~~k~-~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKC-SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEEEECCCCcEEEEeeee-cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 9998865443 3333333 24899999999999999998888 77773211110 11 1111111 1234
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSE 525 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~~~ 525 (526)
...|..++-+...+++++|.+.|.|++|..+-..+.+.
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 55677777888899999999999999999988776654
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=194.48 Aligned_cols=246 Identities=17% Similarity=0.204 Sum_probs=190.1
Q ss_pred ccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC
Q 009763 263 GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS 341 (526)
Q Consensus 263 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~ 341 (526)
...+.|.+|+|+| ...+++.+|.||+||+|+++..+.+.. +....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 4567899999999 556677999999999999988554433 44567999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCCCCeeEEEEccCCc--EEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC
Q 009763 342 GICLTQVSDAGTDGRPEGYTSAAFHPDGL--ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 419 (526)
++... +. .|..+|.++.|-+... .|++|+-|.+|++||+|...++.++.- ...+.++..- ..+++++..
T Consensus 104 ~Q~~~-v~-----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata 174 (347)
T KOG0647|consen 104 GQVSQ-VA-----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATA 174 (347)
T ss_pred CCeee-ee-----ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEec
Confidence 95544 33 6778999999988655 899999999999999999999988874 3466666553 346777776
Q ss_pred Cc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCC-------Cc
Q 009763 420 DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG-------TG 489 (526)
Q Consensus 420 d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~-------~~ 489 (526)
+. |.+|+|+++..............+++++..++....+.|+-+ +.|..++.... ..-.+|..|.. --
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceE
Confidence 65 999999876544333233336778999999998888999888 45555544311 22233444431 23
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 490 KATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 490 ~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.|++++|+|.-..|+++|.||++.+||-+..
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999999999999999999997643
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=210.42 Aligned_cols=262 Identities=21% Similarity=0.299 Sum_probs=200.4
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc-eeeeEecc-cCccceEEEEEecCCCEEEEEECCC
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDN 332 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg 332 (526)
+.....+++|+..|.++++.|.|..|++|+.|.+|++||+..... .+..+.+. .....|+++.|++.|..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 344556788999999999999999999999999999999976431 11222222 3445799999999999999999999
Q ss_pred eEEEEeCCCCeEEEEeec-------CCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCc-eeeEec-----CC
Q 009763 333 TWCFYDLSSGICLTQVSD-------AGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA-NVAKFD-----GH 398 (526)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~-----~~ 398 (526)
..+++|-.....+..... ....+|...++|.+||| +...|++++.||+++|||+...+ ....++ +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999766555444332 23568899999999999 45788999999999999997654 233332 23
Q ss_pred CCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc---ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecc
Q 009763 399 VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 472 (526)
Q Consensus 399 ~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~ 472 (526)
.-+++.++|+++|.+|++|+.|| |.+||.++... +..-..|.....|+++.|+++|++|++-+.| +++|+++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 45789999999999999999999 99999865432 2223344445689999999999999998887 999999654
Q ss_pred cCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC------CCcEEEeeCCC
Q 009763 473 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM------DRNLRVFGLPG 519 (526)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~l~~ 519 (526)
++ ++..+.+....-.-+.++|||+.++|++|.. .|.+.+||-..
T Consensus 397 kk---pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 397 KK---PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cc---chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 43 4444444433456688999999999999864 46788887543
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=204.75 Aligned_cols=265 Identities=18% Similarity=0.319 Sum_probs=211.5
Q ss_pred CCcEEEEeCCCCcEEEEeccc-ccceeEEEEecCCCEEEEEe-CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC
Q 009763 244 DTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (526)
..++.+||+.+|....++++. ...-.++..- .+.+++++. ....+.+|.+..... .....--.++|.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~---~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ---VVQYIVLPGPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh---hhhhcccccceeeeecCCC
Confidence 345999999999998888865 2222222211 335666655 455789999876432 1222235678999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC---------CCcee
Q 009763 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK---------SQANV 392 (526)
Q Consensus 322 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~---------~~~~~ 392 (526)
|.+++.|+..|.|++|.+.+|..+..+. .|...|+|+.|+.||.+|++|+.||.|.+|++. +.++.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~-----aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLS-----AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHH-----hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 9999999999999999999999988875 677899999999999999999999999999863 34678
Q ss_pred eEecCCCCCeEEEEECCC--CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEE
Q 009763 393 AKFDGHVGAVTAISFSEN--GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (526)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 469 (526)
..|..|.-+|+.+...+. ..+|++++.|. +++||+..+..+..+.. ...+.+++.+|.+..+++|+.+++||..
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEee
Confidence 889999999999988765 46899999998 99999999999988887 5789999999999999999999777765
Q ss_pred ecccC--------------cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 470 ASVKA--------------DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 470 ~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
..... ....+..+.+|.....|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 43221 1234445666655569999999999999999999999999998753
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.5e-25 Score=203.33 Aligned_cols=237 Identities=21% Similarity=0.300 Sum_probs=199.3
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
+.|...|.+++.++||++||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-- 276 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-- 276 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence 478889999999999999999999999999999999999999999999999999988888999999999999999875
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
..+.++.+|.+.|..|....-++.+-+|+.|+++++|++.....+... ++...+-|++|-.+ ..|++|+.+|
T Consensus 277 -s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifr------g~~~sidcv~~In~-~HfvsGSdnG 348 (479)
T KOG0299|consen 277 -SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFR------GGEGSIDCVAFIND-EHFVSGSDNG 348 (479)
T ss_pred -HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeee------CCCCCeeeEEEecc-cceeeccCCc
Confidence 667788899999999999877888888889999999999554333222 44568899998754 5789999999
Q ss_pred cEEEEECCCCceeeEecC-C-----------CCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC----ccceEEecCCCC
Q 009763 380 LVKIWDVKSQANVAKFDG-H-----------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDSE 442 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~-~-----------~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~----~~~~~~~~~~~~ 442 (526)
.|.+|++-..+++.+... | ...|++++..|...++++|+.+| |++|-+..+ +++..+.. .
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~ 425 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---V 425 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---c
Confidence 999999998888776531 1 12789999999999999999999 999988665 33334433 6
Q ss_pred CCeeEEEEcCCCCEEEEEeCC----eEEEEE
Q 009763 443 TPTNSVDFDHSGSYLAVASAD----IRVYQV 469 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~d----i~v~~~ 469 (526)
+.|++++|+++|+.+++|... ++-|-.
T Consensus 426 GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred cEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 789999999999988887655 555554
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.8e-25 Score=206.13 Aligned_cols=230 Identities=25% Similarity=0.391 Sum_probs=200.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC------
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE------ 296 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~------ 296 (526)
.+.|.|++-+|.|.+|+.|+..|.+++|.+.+|.++..+..|-..|+|+.|+.||.+|+|||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred CCceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.....+.+.+.+|+-+|+++...+. ..+++++|.|.++++||+..+..+..+.. +..+.+++++|.+..+++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------p~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------PSSIKAVALDPAERVVYI 234 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec------CCcceeEEEcccccEEEe
Confidence 1235778889999999999998764 46899999999999999999998888853 468999999999999999
Q ss_pred EeCCCcEEEEECCCC----------------ceeeEecCCCC--CeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceE
Q 009763 375 GTSEALVKIWDVKSQ----------------ANVAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS 435 (526)
Q Consensus 375 g~~dg~i~iwd~~~~----------------~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~ 435 (526)
|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.|| |.|||..+.+++++
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 999999999887432 23445678887 999999999999999999999 99999999999988
Q ss_pred EecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 436 FESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 436 ~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
+... .++|+.+.+.|-.+-.+.+
T Consensus 315 l~~~--kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 315 LQTS--KGPVTNLQINPLERGIILF 337 (476)
T ss_pred Hhhh--ccccceeEeeccccceecc
Confidence 8743 6789999997754444443
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.8e-27 Score=227.64 Aligned_cols=233 Identities=25% Similarity=0.429 Sum_probs=213.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
.|...+.|+..-..++.+++|+.|..+-+|.......+..+.+|..+|.++.|+++..+|++|+.+|+|++||++..
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--- 102 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--- 102 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh---
Confidence 46667888887667899999999999999999877778889999999999999999999999999999999999986
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
..++++.+|...+..+.|+|-+.|+++|+.|+.+++||++...+...+. +|...+.++.|+|+|.+++.|+.|..
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-----s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-----SHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-----CCcceeEEEeecCCCceeeccCCcce
Confidence 7788999999999999999999999999999999999999888888875 57788999999999999999999999
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEE
Q 009763 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 459 (526)
++|||...|+....|..|.+.+..+.|+|...+++.|+.|. |++||+++...+...... ...|.+..|+|++..+++
T Consensus 178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeec
Confidence 99999999999999999999999999999999999999998 999999988777666554 678999999999999999
Q ss_pred EeCC
Q 009763 460 ASAD 463 (526)
Q Consensus 460 ~~~d 463 (526)
|...
T Consensus 256 G~q~ 259 (825)
T KOG0267|consen 256 GEQI 259 (825)
T ss_pred Cchh
Confidence 8776
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2e-24 Score=189.15 Aligned_cols=286 Identities=17% Similarity=0.353 Sum_probs=215.6
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcE----------EE-----EecccccceeEEEEec-CCCE
Q 009763 217 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQI----------VT-----TLSGHSKKVTSVKFVT-EGDL 279 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~----------~~-----~~~~h~~~V~~l~~~~-~~~~ 279 (526)
.+.+.|.++|+++.+.+ .|+++++|+.||.|.|||++.... .. .-.+|.-.|.++.|.| |..+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 35667889999999998 588999999999999999875431 11 1136888999999999 6668
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC
Q 009763 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 356 (526)
Q Consensus 280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 356 (526)
|.+++.|.+++|||.++. +....|+ ..+.|..-+++|- .-++++|..|-.|++-|+.+|.....+. +|
T Consensus 117 FtssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-----GH 187 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-----GH 187 (397)
T ss_pred eecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----cc
Confidence 999999999999999885 4555554 5677888888883 3467788888999999999999888876 88
Q ss_pred CCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCC-ceeeEe--------------cCCCCCeEEEEECCCCCEEEEEeCC
Q 009763 357 PEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKF--------------DGHVGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 357 ~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~l~~s~~~~~l~~~~~d 420 (526)
...|.++.|+| ..-.|++|+.||.|++||+|.. .+...+ ..|.+.|++++|..+|.++++++.|
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 89999999999 4567889999999999999864 233332 2467789999999999999998888
Q ss_pred c-EEEEEcCCCccceEEecC-CC---CCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEE
Q 009763 421 G-VKLWDLRKLKNFRSFESS-DS---ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCV 494 (526)
Q Consensus 421 ~-i~iwd~~~~~~~~~~~~~-~~---~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (526)
. +++|+..+++....-... .+ ...-..+.--..+.++..-..+ +.++.+ ..+..+..+..| ...|.|.
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~----~sgs~ir~l~~h--~k~i~c~ 341 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNL----LEGSFVRRLSTH--LKRINCA 341 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEc----cCceEEEeeecc--cceeeEE
Confidence 7 999999887653221111 00 1111112211122333332223 666665 556677777776 7789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEeeC
Q 009763 495 KFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 495 ~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
.+-|+-+...+|..|+.|..|..
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecCchhhhhccccCCccccccc
Confidence 99999999999999999999987
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.1e-24 Score=186.25 Aligned_cols=276 Identities=19% Similarity=0.286 Sum_probs=206.2
Q ss_pred eeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecccccceeEEEEec--CCCEEEEEeCCCc
Q 009763 215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKT 288 (526)
Q Consensus 215 ~~~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~ 288 (526)
..++..+|++-|.++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+++++.|++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34677889999999999999999999999999999996432 45667788999999999965 5889999999999
Q ss_pred EEEEeCCC------CCceeeeEecccCccceEEEEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecC--------C
Q 009763 289 VRVWQGSE------DGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDA--------G 352 (526)
Q Consensus 289 i~iwd~~~------~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~ 352 (526)
+.||.-.. +..+....++....+.|+.+.|.| -|-.+++++.||.++||+.-....+...... .
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 99997521 123556667777888999999998 4668999999999999997655433332211 1
Q ss_pred CCCCCCCeeEEEEcc---CCcEEEEEeCC-----CcEEEEECCCC----ceeeEecCCCCCeEEEEECCC----CCEEEE
Q 009763 353 TDGRPEGYTSAAFHP---DGLILGTGTSE-----ALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN----GYYLAT 416 (526)
Q Consensus 353 ~~~~~~~v~~~~~~~---~~~~l~~g~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~----~~~l~~ 416 (526)
+..+..+..|+.|+| ...+|++|+.+ +.+.||....+ ..+.++.+|..+|+.++|.|+ -+.|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 223556788999998 34688888766 47889977544 345567789999999999997 357899
Q ss_pred EeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEE
Q 009763 417 AAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 417 ~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
++.|||+||.+....... ... .+. .|+ .+.++ ....+..+..| .+.|..+.|
T Consensus 245 A~kDgv~I~~v~~~~s~i-~~e-----e~~----~~~-----------~~~~l-----~v~~vs~~~~H--~~~VWrv~w 296 (361)
T KOG2445|consen 245 ATKDGVRIFKVKVARSAI-EEE-----EVL----APD-----------LMTDL-----PVEKVSELDDH--NGEVWRVRW 296 (361)
T ss_pred eecCcEEEEEEeeccchh-hhh-----ccc----CCC-----------Ccccc-----ceEEeeeccCC--CCceEEEEE
Confidence 999999999987432111 000 000 010 00111 22344556665 889999999
Q ss_pred cCCCCEEEEEeCCCcEEEeeCC
Q 009763 497 GPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 497 s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
+-.|..|++.|.||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999864
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=5.8e-25 Score=203.72 Aligned_cols=253 Identities=21% Similarity=0.376 Sum_probs=197.0
Q ss_pred ccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCCc-------eeeeEecccCccceEEEEEecCC-CEEEEEECCCe
Q 009763 263 GHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGN-------YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT 333 (526)
Q Consensus 263 ~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~ 333 (526)
.|.+.|+.+.+.|.. .++++++..+.|.|||...... ..+-..+.+|...-++|+|++.. -++++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 589999999999955 4677788899999999765432 12333678999988999999854 57999999999
Q ss_pred EEEEeCCCCeEEE--EeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECC--CCceeeEecCCCCCeEEEEEC
Q 009763 334 WCFYDLSSGICLT--QVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK--SQANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 334 i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s 408 (526)
|++||+....... ........+|...|..++|++ +..+|++.+.|+.+.|||+| +.++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999998654310 000111347889999999999 77899999999999999999 556677778899999999999
Q ss_pred C-CCCEEEEEeCCc-EEEEEcCCCcc-ceEEecCCCCCCeeEEEEcCCC-CEEEEEeCC--eEEEEEecccCcc------
Q 009763 409 E-NGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADW------ 476 (526)
Q Consensus 409 ~-~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~------ 476 (526)
| ++..||+|+.|+ |.+||+|+.+. +..+..+ ...|..+.|+|.. ..|++++.| +.|||+.......
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H--~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGH--EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCC--CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 9 677889999898 99999998764 4455444 7899999999975 566677777 9999996533221
Q ss_pred ----eeeeeecCCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEeeCCC
Q 009763 477 ----NCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 477 ----~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~l~~ 519 (526)
+.+....+ |...|..+.|+|... .+++.+.|+.+.||+...
T Consensus 360 dgppEllF~HgG--H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGG--HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecC--cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22233333 588899999999765 577889999999999874
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.7e-25 Score=207.44 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=206.0
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEeccc--CccceEEEEEecCCCEEEEEECCCeEEEEeCC
Q 009763 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 340 (526)
Q Consensus 263 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~ 340 (526)
.|..-|.++.++...+.++||+. |.|+|||+...+....+..+.. ....|.++.++|+|+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 47788889999988899999987 7899999987655455555543 45679999999999999999999999999998
Q ss_pred CCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC
Q 009763 341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.......... ....-..++++++||.++.+++..||.|.|||+++...+..|++|...+.||.++++|..|.+|+-|
T Consensus 496 apTprikael---tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 496 APTPRIKAEL---TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred CCCcchhhhc---CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 7654333321 1222356789999999999999999999999999999999999999999999999999999999999
Q ss_pred c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC
Q 009763 421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 421 ~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
. |+.||+|.++.+..... ...|.++...|++.+|++|-.+..+|-+...+. ..+..|.|...|.++.|.+-
T Consensus 573 ntvRcWDlregrqlqqhdF---~SQIfSLg~cP~~dWlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa~c 644 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDF---SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYC 644 (705)
T ss_pred cceeehhhhhhhhhhhhhh---hhhheecccCCCccceeeecccCcEEEEecCCc-----cceeecccccEEEEEEeccc
Confidence 8 99999999887766555 578999999999999999999977777633222 22333446889999999999
Q ss_pred CCEEEEEeCCCcEEEeeCCCCC
Q 009763 500 AKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 500 ~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|+++++.+.|..+..|..+-+.
T Consensus 645 GkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred CceeeecCchhhhhhccCcccc
Confidence 9999999999999999987654
No 122
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=211.14 Aligned_cols=293 Identities=12% Similarity=0.200 Sum_probs=227.8
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--cEEEEecccccceeEEEE-ecCCCEEEEEeCCCcEEEEeCCC
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
..|.+-|..+....+++.|++++.|-+|++|+...+ -+..++..|...|.|+++ .++..++++||.|+.|.+||+++
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~ 149 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT 149 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence 457788999999999999999999999999998876 467788899999999999 77888999999999999999986
Q ss_pred CCc-------eeeeEecc-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC
Q 009763 297 DGN-------YDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (526)
Q Consensus 297 ~~~-------~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 368 (526)
+.. ......+. ++...|++++.++.|..|++|+..+.+++||.++++.+..+. +|...|.++-.++|
T Consensus 150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-----GHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-----GHTDNVRVLLVNDD 224 (735)
T ss_pred cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-----ccccceEEEEEcCC
Confidence 521 12223333 888999999999999999999999999999999999888886 78889999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeE
Q 009763 369 GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 369 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
|..++++++||+|++||+...+++.++..|...|.++..+|+-..+.+|+.++ |..=|+++......+-.. ..++..
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~ 302 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLK 302 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhh
Confidence 99999999999999999999999999999999999999999999999999998 999999985332222222 456666
Q ss_pred EEEcCCCC--EEEEEeCCeEEEEEeccc------Ccce-------ee-e----eecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 448 VDFDHSGS--YLAVASADIRVYQVASVK------ADWN-------CI-K----TFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 448 i~~s~~~~--~l~~~~~di~v~~~~~~~------~~~~-------~~-~----~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
+..+...+ ++.+...+|+-|...... ..+. .. . ......+...+..-++-.|.+++++-.
T Consensus 303 l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkD 382 (735)
T KOG0308|consen 303 LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKD 382 (735)
T ss_pred hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeec
Confidence 66653222 333333336666432110 0000 00 0 000011123344455666889999999
Q ss_pred CCCcEEEeeCCC
Q 009763 508 MDRNLRVFGLPG 519 (526)
Q Consensus 508 ~dg~v~iw~l~~ 519 (526)
..|.+.+||+-.
T Consensus 383 a~gnv~lwDIl~ 394 (735)
T KOG0308|consen 383 AKGNVALWDILA 394 (735)
T ss_pred CCCCEEEEEeee
Confidence 999999999854
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.7e-24 Score=204.04 Aligned_cols=306 Identities=19% Similarity=0.224 Sum_probs=232.0
Q ss_pred CCCCChHHHhcccccceeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC
Q 009763 199 PALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 278 (526)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~ 278 (526)
+.++....+..|..... .+.++|.+.|.||...|.|.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.++
T Consensus 377 PkLPsp~dLrPFPt~~~-lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 377 PKLPSPKDLRPFPTRCA-LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD 454 (733)
T ss_pred ccCCChhhcCCCcceee-eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC
Confidence 34555555665654333 4788999999999999999999999999999999999999999887 455799999999765
Q ss_pred E--EEEEeCCCcEEEEeCCCC---------------------------------Cc-eeeeEecccCccceEEEEEecCC
Q 009763 279 L--FLTGSADKTVRVWQGSED---------------------------------GN-YDCKHTLKDHTAEVQAVTVHATN 322 (526)
Q Consensus 279 ~--l~s~s~dg~i~iwd~~~~---------------------------------~~-~~~~~~~~~h~~~v~~l~~~p~~ 322 (526)
. |+++-. +.+.|-+..-+ .. ..-+...-.|...|..+.||..|
T Consensus 455 ~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 455 LCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred ceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 3 444433 33444431110 00 01122333588899999999999
Q ss_pred CEEEEEECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC
Q 009763 323 KYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399 (526)
Q Consensus 323 ~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 399 (526)
.||++...+ ..|.|+++.......-+. ...+.+.++.|||...+|++++. ..|+|||+..+..+..+....
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~-----kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFR-----KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchh-----hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC
Confidence 999998764 568899988766554443 22357999999998888888765 679999999888888887777
Q ss_pred CCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC-ccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEec----
Q 009763 400 GAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS---- 471 (526)
Q Consensus 400 ~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~---- 471 (526)
..|.+++.+|+|..|+.|+.++ +..||+.-. ++.+.+..| ...+++++|++.-.++++|+.| +.||.-..
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 7899999999999999999998 999999754 566666665 6789999999999999999998 55543211
Q ss_pred -ccCcceeeeeecCCCC--CcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 472 -VKADWNCIKTFPDLSG--TGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 472 -~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
.+....+++.+.+|.- ...|..+.|+|..-+|++++.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1122445666666632 2458888999999999999999999998
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=201.11 Aligned_cols=245 Identities=21% Similarity=0.347 Sum_probs=199.8
Q ss_pred EEEecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEE
Q 009763 258 VTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (526)
Q Consensus 258 ~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (526)
+..+.||...|.|++=+|.. ..+++|+.||.|+|||+... .+..++..|.+.|..|++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 34567899999999999976 67999999999999999876 78899999999999999975 77899999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCC-CEEE
Q 009763 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLA 415 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~ 415 (526)
|.++.. ...++.. ...+..+.-+..++.+++++. .|.|||.....++..+......|.++.|+|.. ..|+
T Consensus 134 wk~~~~-p~~tilg------~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 134 WKIDGP-PLHTILG------KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeccCC-cceeeec------cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 998764 4444432 245777777777888888875 58999999999999999888899999999975 4566
Q ss_pred EEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEE
Q 009763 416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCV 494 (526)
Q Consensus 416 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (526)
++..|+ |.+||+|...+++.+.. ....+.|+|+|.+-.+++|++|-.+|.++.. .-..++..+.+| .+.|.++
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR-~l~~p~~v~~dh--vsAV~dV 278 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMR-NLSRPLNVHKDH--VSAVMDV 278 (433)
T ss_pred eeccCCceEEEecccCCccceeee---eccccceecCccccceeeccccccceehhhh-hhcccchhhccc--ceeEEEe
Confidence 666776 99999999999988876 4567889999988888888888444444322 223444555554 7889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 495 KFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 495 ~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
.|||.|+-+++||.|.+|+||.+..+..
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcc
Confidence 9999999999999999999999976643
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=8e-24 Score=186.95 Aligned_cols=244 Identities=21% Similarity=0.235 Sum_probs=192.4
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 009763 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 264 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~ 343 (526)
....|+++.|+|.++.|+++++||++++||+... ..... ..|..++.+++|.+ ...+++|+.||.|+.+|++++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 3567999999999889999999999999999875 33333 35899999999985 6678999999999999999987
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-E
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-V 422 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i 422 (526)
....- .|..++.|+.+.+....+++|+.|+.|++||.+.......+.. ...|.++.. .|..|++|+.+. |
T Consensus 87 ~~~ig------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 87 EDQIG------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKV 157 (323)
T ss_pred ceeec------cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceE
Confidence 55433 6678999999999888999999999999999998666666653 347888877 567888888887 9
Q ss_pred EEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEE--EEecccCcceeeeeecCCC-------CCcceEE
Q 009763 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVY--QVASVKADWNCIKTFPDLS-------GTGKATC 493 (526)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~--~~~~~~~~~~~~~~~~~~~-------~~~~v~~ 493 (526)
.+||+|+...............++++++-|++.-+++++-++||. .++...........|..|. ..-+|++
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 999999987766555555577899999999999999999885554 3322211112222333331 1246899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 494 VKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 494 ~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
++|+|-.+.||||+.||.|.+||+...+
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchh
Confidence 9999999999999999999999997654
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=210.15 Aligned_cols=244 Identities=22% Similarity=0.388 Sum_probs=202.7
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC
Q 009763 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 342 (526)
Q Consensus 263 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~ 342 (526)
.|...-+.|+|.|+|.+|++++.||.|++|+..... ..-.++..+...|.+++. .+++|++|+.+++|.+|.+..+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 588889999999999999999999999999876541 111222237778888876 4669999999999999999887
Q ss_pred eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-
Q 009763 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG- 421 (526)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~- 421 (526)
..-..+. ...-++.+++|+.+|++++.|+.|-.|++.++........+.+|.++|.++.|+|++.+|++.+.||
T Consensus 87 ~~~~iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 87 EEDTILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred Cccceee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 6543333 1235799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCccceEEecCCC------CCCeeEEEEcCCCCEEE-EEeCC-eEEEEEecccCcceeeeeecCCCCCcceEE
Q 009763 422 VKLWDLRKLKNFRSFESSDS------ETPTNSVDFDHSGSYLA-VASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATC 493 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~------~~~i~~i~~s~~~~~l~-~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 493 (526)
|++||+.++.....+..... ...+..++|+|+|..++ .+..+ |++|+. ..|.....+....+...+.+
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r----~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR----KGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc----CCceeheeecccccccceEE
Confidence 99999999887666554321 34567899999955544 45544 999997 78888888877656667999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 494 VKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 494 ~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+.|+|.|+|||+++.||.|.|||++.
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999999984
No 127
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=215.04 Aligned_cols=205 Identities=20% Similarity=0.383 Sum_probs=173.3
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCe
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNT 333 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~ 333 (526)
.+++..+.||.+.|.+|.|+.+ ++|++++.|.+||+|++... .|+..|. |.+.|+|++|+| |.+||++|+-||.
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc---ceeeEEe-cCCeeEEEEecccCCCcEeecccccc
Confidence 3667888999999999999965 48999999999999999876 7888885 999999999999 7799999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC--------CCCCeEEE
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--------HVGAVTAI 405 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l 405 (526)
++||++...+.+.-... ..-|++++|.|||+..++|+.+|.+++|+....+....+.. ....|+++
T Consensus 434 vRiWsI~d~~Vv~W~Dl------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWNDL------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred eEEeecCcCeeEeehhh------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence 99999998877665532 25799999999999999999999999999988766554421 12379999
Q ss_pred EECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 406 SFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 406 ~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
.|.|.. ..+++.+.|. |+|||++....+..++.......-....|+.+|++|+++++| +.||+++
T Consensus 508 Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred EecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 999843 3455556665 999999999999999877666667788999999999999998 9999863
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-22 Score=196.92 Aligned_cols=288 Identities=14% Similarity=0.221 Sum_probs=231.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE-EEEeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~-~~~~~~h-~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
+..-..++|++++|+.+.+.||.+-.+|.|-+|++..+-. ...+.++ ...|-+++|++ +..|++.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 3344567899999999999999999999999999987533 3445554 46799999995 5568888999999999998
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
+. +....+....+.|++++.+|.+..++.|+.||.+..++...++....... ....+.+.++.|+|++..++.|
T Consensus 99 ~l---k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 99 TL---KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred cC---ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec---ccccceEEEEEecCCccEEEec
Confidence 87 66777777889999999999999999999999888888888876655542 2335789999999999999999
Q ss_pred eCCCcEEEEECCCCceeeEec--------CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCee
Q 009763 376 TSEALVKIWDVKSQANVAKFD--------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 446 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~--------~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~ 446 (526)
+.||.|++||..++..+.... +...-|.++.|-.++ .|++|...| |.+||...+..+..+..+ ...|.
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl 249 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL 249 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence 999999999999987766221 123457888888554 677777777 999999999999988887 67899
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEec--ccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 447 SVDFDHSGSYLAVASADIRVYQVAS--VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~di~v~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+++.++++.++++++-|.+++.+.. ....|........| ...|.+++..++ .|++|+.|+.+.+-....
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h--~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH--AHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC--cccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999999999999955555433 33335555555554 567899998776 899999999998876654
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.5e-24 Score=188.11 Aligned_cols=254 Identities=24% Similarity=0.376 Sum_probs=209.7
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
.+++.+.||...|+.++.......+.+++.|.+.+||.++++ .|+.++.+|.+.|+++.|++.+.++++++.|++-.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 456678899999999998777778999999999999999998 89999999999999999999999999999999999
Q ss_pred EEeC------CCC------------------------------eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 336 FYDL------SSG------------------------------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 336 iwd~------~~~------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
||.. ... ..+. .......+|...|.+..|...|..+++++.|.
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-VPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-eeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 9972 110 0000 00111346778889999999999999999999
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC-ccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
+..+||+.+++.+..+.+|....+.++-+|+.+++++++.|. .++||++.. ..+..|..| ...|+++.|..+. .+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH--tdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH--TDTVTSVVFNTDD-RV 371 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc--ccceeEEEEecCC-ce
Confidence 999999999999999999999999999999999999999998 999999843 234445554 7889999998654 45
Q ss_pred EEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 458 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
++|+.| ++||++.... ..+.++.. ..+++.++.+..+..++.--++..|++||++++..
T Consensus 372 VSgSDDrTvKvWdLrNMR---splATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMR---SPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred eecCCCceEEEeeecccc---Ccceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 677777 9999995433 34444433 67889999998888999888889999999998764
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=194.21 Aligned_cols=292 Identities=18% Similarity=0.206 Sum_probs=216.6
Q ss_pred cccCCCCCeEEEEecCCC--CEEEEEeCCCcEEEEeCCCC----cEEEEecccccceeEEEEec-CCCEEEEEeCCCcEE
Q 009763 218 LHKTSKPGIVSLDIHYSK--DVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVR 290 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~--~~l~t~~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~ 290 (526)
..+.+...|++++|+|.. +++|+|...|+|-+||+.+. ..+..+..|..+|.++.|+| +...+++.|.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 455678899999999965 48999999999999999522 33667788999999999999 556799999999999
Q ss_pred EEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CC
Q 009763 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG 369 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 369 (526)
+-|++.. ..+.+..+......+..+.|+.+...++.+..=|.+.+||++++....... .-|...|++++++| ..
T Consensus 261 ~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~----~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 261 LQDFEGN-ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL----RLHKKKITSVALNPVCP 335 (498)
T ss_pred eeeecch-hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh----hhhhcccceeecCCCCc
Confidence 9999874 234444444345567788888888888888888899999999876533221 14556899999999 66
Q ss_pred cEEEEEeCCCcEEEEECCCCce----eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcC----CCccceEEecCC
Q 009763 370 LILGTGTSEALVKIWDVKSQAN----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR----KLKNFRSFESSD 440 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~----~~~~~~~~~~~~ 440 (526)
.+|++++.|++.+|||+|.-.. ......|...|.+..|||.+-.|++.+.|. |+|||.. ...+...+....
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 8999999999999999986422 233345889999999999877788888887 9999983 333333333211
Q ss_pred C---CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEE-EEEcCCCC-EEEEEeCCCcEE
Q 009763 441 S---ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATC-VKFGPDAK-YIAVGSMDRNLR 513 (526)
Q Consensus 441 ~---~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~-~l~s~~~dg~v~ 513 (526)
. --......|+|+..++++|..- |-||+- ...+.+..+.... ...|.+ ..|+|-+. +++.++..|.|+
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~----~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG----NGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcC----CCCEEeeeccCcc-ccccccceeecccccceeccCCccceEE
Confidence 1 1235567899999999999876 888885 4444455544331 224555 48999887 444555678899
Q ss_pred EeeCCC
Q 009763 514 VFGLPG 519 (526)
Q Consensus 514 iw~l~~ 519 (526)
||.-..
T Consensus 491 vft~k~ 496 (498)
T KOG4328|consen 491 VFTNKK 496 (498)
T ss_pred EEecCC
Confidence 886543
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.3e-25 Score=218.22 Aligned_cols=253 Identities=23% Similarity=0.436 Sum_probs=220.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEE
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA 315 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 315 (526)
.+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+... ..+..+.+|..+|.+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIES 75 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCccee
Confidence 344455555567777764 34468888899888778889999999999999988664 566678999999999
Q ss_pred EEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 009763 316 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 395 (526)
Q Consensus 316 l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 395 (526)
+.|++...+|+.|+.+|+|++||++.++.+.++. +|...+..+.|+|-+.+++.|+.|+.+.+||.+...+.+.+
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-----gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-----GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhh-----ccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 9999999999999999999999999999888775 77788999999999999999999999999999988899999
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecc
Q 009763 396 DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 472 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~ 472 (526)
.+|...+..+.|+|+|.|++.+++|. ++|||+..++....|..+ ...+..+.|+|..-+++.|+.| +++|++
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl--- 225 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDL--- 225 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc--cccccccccCchhhhhccCCCCceeeeecc---
Confidence 99999999999999999999999987 999999999999998876 6789999999999999999999 999998
Q ss_pred cCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 473 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
..+..+...... ...|.+..|++++..+++|..+.
T Consensus 226 -etfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 226 -ETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -ceeEEeeccCCc--cCCceeeeecCCceeeecCchhh
Confidence 556666665554 67899999999999998886543
No 132
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=2.3e-23 Score=201.90 Aligned_cols=299 Identities=17% Similarity=0.265 Sum_probs=236.1
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE-------EEEecccccceeEEEEecCCCEEEEEeCCCcE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~-------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 289 (526)
.+.-+|.+-|.++.|+|.+..|++++.|.++.+|...+..- +..+.|.........|+|+++.+++-+.-|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 35679999999999999999999999999999998765421 22233455678899999999999999999999
Q ss_pred EEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
++|.......+.....+.||...|+.++|+|.|.+|+++|.|.+-++|-.- |+...-.....++.|...++|++|-+..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCC
Confidence 999855555566666778999999999999999999999999999998765 2221122222244666789999999877
Q ss_pred cEEEEEeCCCcEEEEECCC----------C----------------------cee-------------------------
Q 009763 370 LILGTGTSEALVKIWDVKS----------Q----------------------ANV------------------------- 392 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~----------~----------------------~~~------------------------- 392 (526)
..+++|.....+++|+... + +..
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 7888998889999996521 0 000
Q ss_pred -------------------eEecCCCCCeEEEEECCCCCEEEEEeCC-----c-EEEEEcCCCccceEEecCCCCCCeeE
Q 009763 393 -------------------AKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 393 -------------------~~~~~~~~~i~~l~~s~~~~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
.++-+|...|.+++.+|+|+++++++.. . |++|+..+......+..| .-.|+.
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H--sLTVT~ 577 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH--SLTVTR 577 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc--ceEEEE
Confidence 0011788889999999999999998764 2 999999998888877776 779999
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 448 VDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
++|+|||+||++.+.| ..+|................. |..-|.+..|+|++.+++|+|.|.+|+||..+.+
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~--HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA--HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccc--cceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999 999987433222222222333 4778899999999999999999999999999876
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1e-22 Score=201.37 Aligned_cols=283 Identities=20% Similarity=0.339 Sum_probs=229.2
Q ss_pred CCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC--
Q 009763 223 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG-- 298 (526)
Q Consensus 223 ~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-- 298 (526)
.+.|++++|.-||+ ++|+|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|+.+++|=.+++.
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 48999999999987 67778888999999999877766555 677778888888777788888888777777311000
Q ss_pred --------------------------------------------------------------------------------
Q 009763 299 -------------------------------------------------------------------------------- 298 (526)
Q Consensus 299 -------------------------------------------------------------------------------- 298 (526)
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence
Q ss_pred ------ceee----------------------eEec-----ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 009763 299 ------NYDC----------------------KHTL-----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 345 (526)
Q Consensus 299 ------~~~~----------------------~~~~-----~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~ 345 (526)
.+.. ...+ +.....+++++.++.|++.+.|...|.|-+|++.+|...
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 0000 0001 112256889999999999999999999999999999887
Q ss_pred EEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEE
Q 009763 346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL 424 (526)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i 424 (526)
..+.. ...|..+|+.++...-++.+++++.+|.+.+||.+....+..+. -...+.++..+.....++.+.++- |++
T Consensus 484 ~sf~~--~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 484 KSFGD--SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred ccccc--CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 77742 34788899999999999999999999999999999888777776 345788888888888888888886 999
Q ss_pred EEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCE
Q 009763 425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 502 (526)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 502 (526)
+|..+.+.++.+..| ...|++++|||+|++|++++.| |++||+ ....++..+.. ..+.+++.|+|+|.+
T Consensus 561 vD~~t~kvvR~f~gh--~nritd~~FS~DgrWlisasmD~tIr~wDl----pt~~lID~~~v---d~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGH--GNRITDMTFSPDGRWLISASMDSTIRTWDL----PTGTLIDGLLV---DSPCTSLSFSPNGDF 631 (910)
T ss_pred EEchhhhhhHHhhcc--ccceeeeEeCCCCcEEEEeecCCcEEEEec----cCcceeeeEec---CCcceeeEECCCCCE
Confidence 999999999999887 7899999999999999999998 999999 45555655543 668899999999999
Q ss_pred EEEEeCC-CcEEEeeC
Q 009763 503 IAVGSMD-RNLRVFGL 517 (526)
Q Consensus 503 l~s~~~d-g~v~iw~l 517 (526)
||+...| .-|++|.=
T Consensus 632 LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEEecCceEEEEEc
Confidence 9999988 67999963
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=6.8e-22 Score=185.12 Aligned_cols=278 Identities=17% Similarity=0.265 Sum_probs=210.8
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE---Eeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---TLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~---~~~~h-~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
....|..+.|+|.+.-++.....|.+.+|++..+.+.+ .+..+ ..-|.|++|.++|+ +++|..+|.|.||+..+.
T Consensus 199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN 277 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc
Confidence 35678899999976544444447899999998876644 34333 36799999999997 789999999999998654
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-----------EEEEeecC---------------
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-----------CLTQVSDA--------------- 351 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~~--------------- 351 (526)
+..+....|.+.|.+++...+|.++ +|+.|..|..||-.-.+ .+..+...
T Consensus 278 ---~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 278 ---RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred ---eEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 4555555899999999999888755 49999999999932110 01111000
Q ss_pred ---------CCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-
Q 009763 352 ---------GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG- 421 (526)
Q Consensus 352 ---------~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~- 421 (526)
...+|......++.+|+..++++++.|+.+++|+ ..+...+.. -..++.|+.|+|.| .++.|...|
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~ 429 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR 429 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce
Confidence 0124556778999999999999999999999999 444444433 45689999999999 999999888
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
..+.|..+...+. +... ..+++.+.|+|+|.+||+|+.| +.||.++...... .....+. ..+|+.+.|++|
T Consensus 430 w~V~d~e~~~lv~-~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y---~r~~k~~-gs~ithLDwS~D 502 (626)
T KOG2106|consen 430 WFVLDTETQDLVT-IHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY---SRVGKCS-GSPITHLDWSSD 502 (626)
T ss_pred EEEEecccceeEE-EEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE---EEeeeec-CceeEEeeecCC
Confidence 8899998854443 3332 6799999999999999999999 7778775443333 3333332 379999999999
Q ss_pred CCEEEEEeCCCcEEEe
Q 009763 500 AKYIAVGSMDRNLRVF 515 (526)
Q Consensus 500 ~~~l~s~~~dg~v~iw 515 (526)
+++|.+-+-|-.|..|
T Consensus 503 s~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYW 518 (626)
T ss_pred CceEEeccCceEEEEE
Confidence 9999999999999999
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=199.80 Aligned_cols=286 Identities=17% Similarity=0.248 Sum_probs=202.6
Q ss_pred EEEEecC---CCCEEEEEeCCCcEEEEeCCCCcE------EEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 227 VSLDIHY---SKDVIATGGVDTNAVLFDRPSGQI------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 227 ~~~~~s~---~~~~l~t~~~dg~v~vwd~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
.+..|++ ...+|+.+..||.|.+||...... +.....|...|..+.|.|....|++++.|.++++||+.+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3455654 345899999999999999765432 2455679999999999996668999999999999999886
Q ss_pred CceeeeEe--cccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEE--EE--------eec------------CC
Q 009763 298 GNYDCKHT--LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICL--TQ--------VSD------------AG 352 (526)
Q Consensus 298 ~~~~~~~~--~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~--~~--------~~~------------~~ 352 (526)
.++.. +.+|.+.|.+++|+|.+ ..|++|+.||.|.|||++-...- .. ... ..
T Consensus 133 ---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 133 ---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 44444 78999999999999965 57899999999999998754310 00 000 00
Q ss_pred CCCCCCCeeE---EEEccCCcEEEEEeC-CCcEEEEECCCCceeeEe--------cCC---CCCeEEEEECCCCCEEEEE
Q 009763 353 TDGRPEGYTS---AAFHPDGLILGTGTS-EALVKIWDVKSQANVAKF--------DGH---VGAVTAISFSENGYYLATA 417 (526)
Q Consensus 353 ~~~~~~~v~~---~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~i~~l~~s~~~~~l~~~ 417 (526)
...+...+.+ +.+..|...|++++. |+.|+|||++........ ..| ...+.++.....|.+|++.
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 1122233444 555567778888777 999999999976543322 122 3367788888778888777
Q ss_pred eCCc-EEEEEcCCCcc--ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceE
Q 009763 418 AHDG-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT 492 (526)
Q Consensus 418 ~~d~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 492 (526)
+.|+ |++|+++.... ...+...........-..+|++.++++|+.+ ..+|.++ ..+.....+.+| ...|+
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs---~~e~~~~~l~Gh--t~eVt 364 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS---SPEAPPALLLGH--TREVT 364 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec---CccCChhhhhCc--ceEEE
Confidence 7777 99999987543 2223222212222334568999999999999 7777773 334444555554 77899
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEeeCCCC
Q 009763 493 CVKFGPD-AKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 493 ~~~~s~~-~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+++|.|. -.-++++++|-.+++|++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999873 234677799999999999543
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7e-22 Score=191.45 Aligned_cols=207 Identities=18% Similarity=0.224 Sum_probs=171.4
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
++.+....|-+++|++ +..|++.+.+|.|.-||+.+++....+....+.|++++.+|.++.++.|+.||.+..++...+
T Consensus 64 i~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred EecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 5556667899999995 556777778999999999999999999999999999999999999999999997777777653
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC--C-CCCCCCeeEEEEccCCcEEEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG--T-DGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.......+...++.|.+++|+|++..++.|+.||.|++||...+..+......- . .+...-|.++.|-.+ ..|++
T Consensus 143 -~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~s 220 (691)
T KOG2048|consen 143 -KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIAS 220 (691)
T ss_pred -eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEE
Confidence 334455566677899999999999999999999999999999998777332110 1 113345677777744 57899
Q ss_pred EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEc
Q 009763 375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 427 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~ 427 (526)
|.+.|+|.+||...+..+..+..|...|.+++..+++.++++++.|+ |..|..
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 99999999999999999999999999999999999999999998887 555543
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=3.9e-23 Score=200.55 Aligned_cols=245 Identities=19% Similarity=0.297 Sum_probs=209.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEec---CCCEEEEEeCCCcEEEEeCCCCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT---EGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
.+-+|.+++.+|+|++||+|..-|+++||++.+.+....+..|...|.|+.|+. ..++|++++.|..|+|||+..
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-- 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-- 535 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--
Confidence 456899999999999999999999999999999888899999999999999985 356899999999999999865
Q ss_pred ceeeeEecccCccceEEEEEecCC--CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
++..+.++.+|...|+++.|--.| ..+++++.|+.|.+--.........+...........++.+++.|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 467888999999999999998766 678999999887654333222222332222223346789999999999999999
Q ss_pred CCCcEEEEECCCCceeeEecC---CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 377 SEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
.|..|+|||+.+++.++.|++ |.+....+...|.|.|+++.+.|. +.+||+.+++++.....| ...|+.+.|.+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH--sE~VTG~kF~n 693 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH--SEAVTGVKFLN 693 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc--chheeeeeecc
Confidence 999999999999999999975 567788899999999999999997 999999999999988777 67899999999
Q ss_pred CCCEEEEEeCC--eEEEEEe
Q 009763 453 SGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~~~ 470 (526)
|.+.|++.+.| |.||.+.
T Consensus 694 DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchhheeecCCceEEEEECc
Confidence 99999999988 7778764
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.6e-24 Score=207.69 Aligned_cols=229 Identities=19% Similarity=0.347 Sum_probs=182.9
Q ss_pred eEEEEecC-CCCEEEEEeCCCcEEEEeCCC---CcEEEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 226 IVSLDIHY-SKDVIATGGVDTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 226 I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~---~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
+..+.|+. ..++|||++..|.|.+||+.. .+.+..|..|+..|+++.|++ ...+|++||.||+|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 44566764 467999999999999999986 566778889999999999998 5668999999999999999886
Q ss_pred eeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 301 DCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
....++.+....|..+.|+| .+.+|+++...|.+.+||++....-... ...|.++|.|+.|||++.+||+|+.|+
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k----~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK----LTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH----hhcccCceEEEeecCCCceeeecCCCc
Confidence 56667778888999999999 5778999999999999999876432221 237889999999999999999999999
Q ss_pred cEEEEECCCCce--eeEecCCCCCeEEEEECCC-CCEEEEEeCC--c-EEEEEcCCCc-cceEEecCCCCCCeeEEEEcC
Q 009763 380 LVKIWDVKSQAN--VAKFDGHVGAVTAISFSEN-GYYLATAAHD--G-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 380 ~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d--~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s~ 452 (526)
.|+|||+.+++. +.++. ...+|.++.|-|. .++|++++.- . |+|||++..- +..++..| ...++.++|..
T Consensus 243 ~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~ 319 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDS 319 (839)
T ss_pred cEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccC
Confidence 999999986643 33333 3468999999996 4567777654 3 9999998643 44555555 67888999976
Q ss_pred -CCCEEEEEeCCe
Q 009763 453 -SGSYLAVASADI 464 (526)
Q Consensus 453 -~~~~l~~~~~di 464 (526)
+-..|.+++.|.
T Consensus 320 ~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 320 GDRINLWSCSKDG 332 (839)
T ss_pred CCceeeEeecCcc
Confidence 345556666663
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=184.08 Aligned_cols=245 Identities=18% Similarity=0.304 Sum_probs=182.1
Q ss_pred CCCCCeEEEEecCCC--CEEEEEeCCCcEEEEeCCC----------------CcEEEEecccccceeEEEEecC-CCEEE
Q 009763 221 TSKPGIVSLDIHYSK--DVIATGGVDTNAVLFDRPS----------------GQIVTTLSGHSKKVTSVKFVTE-GDLFL 281 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~--~~l~t~~~dg~v~vwd~~~----------------~~~~~~~~~h~~~V~~l~~~~~-~~~l~ 281 (526)
.|.+.|..+..++-+ .+.++-+..|.|.||++.. .+++.++.+|...=..++|+|- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 355667777766654 4666667899999999632 3567788899999999999992 23488
Q ss_pred EEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCe
Q 009763 282 TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360 (526)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 360 (526)
+|..-+.|++|...++.=..-...+.+|+..|-.|+|+|.. ..|++||.||+|+|||++.+.....+. ...|...|
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~---~kAh~sDV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS---TKAHNSDV 305 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE---eeccCCce
Confidence 88888999999988743222234566899999999999964 689999999999999999984433333 23777899
Q ss_pred eEEEEccCCcEEEEEeCCCcEEEEECCC---CceeeEecCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCcc---
Q 009763 361 TSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN--- 432 (526)
Q Consensus 361 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~--- 432 (526)
+.+.|+.+..+|++|+.||+++|||+|+ ++++..|+.|..+|+++.|+|. ...|++++.|. |.+||+.--.-
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999888999999999999999986 4678899999999999999995 34555556665 99999853211
Q ss_pred -------------ceEEecCCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEE
Q 009763 433 -------------FRSFESSDSETPTNSVDFDHSG-SYLAVASAD-IRVYQ 468 (526)
Q Consensus 433 -------------~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d-i~v~~ 468 (526)
.+.+..|.....+..+.|++.- .++++.+.+ +.||.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 1112223234567778888764 344444444 77775
No 140
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=181.15 Aligned_cols=278 Identities=15% Similarity=0.246 Sum_probs=203.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEec--CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCc-cc
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AE 312 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~ 312 (526)
..+|++.+.|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||++..... ....+..+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccCCCCCc
Confidence 5789999999999999999999999999999999999987 4667999999999999999886432 233344454 56
Q ss_pred eEEEEEecCCCEEEEEEC----CCeEEEEeCCCCeE-EEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEEC
Q 009763 313 VQAVTVHATNKYFVTASL----DNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV 386 (526)
Q Consensus 313 v~~l~~~p~~~~l~s~s~----dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~ 386 (526)
..+++.+-.++.+++|.. +-.+.+||++..+. +..+ ...|...|+++.||| +.++|++|+.||.|.+||+
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~----~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL----NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh----hhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 777777767788888753 67899999998876 5555 347888999999999 7799999999999999999
Q ss_pred CCCce---eeEecCCCCCeEEEEECCCC--CEEEEEeCCcEEEEEcCCCccceEEecCCC----------CCCeeEEEEc
Q 009763 387 KSQAN---VAKFDGHVGAVTAISFSENG--YYLATAAHDGVKLWDLRKLKNFRSFESSDS----------ETPTNSVDFD 451 (526)
Q Consensus 387 ~~~~~---~~~~~~~~~~i~~l~~s~~~--~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~----------~~~i~~i~~s 451 (526)
+.... +...-.+...|.++.|..++ +.+......+..+|++..+.....+..... ...+......
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 76522 22222366789999999988 544444445599999998876544443311 0112122222
Q ss_pred CCCCEEEEEeCC---eEEEEEec--ccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 452 HSGSYLAVASAD---IRVYQVAS--VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 452 ~~~~~l~~~~~d---i~v~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
.++..++.++.+ +.++-+.. .......+..+.++ |...|.++.|...+.++++||.||.+.+|..++
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 345566665553 66665532 22233344444443 466788899998999999999999999999643
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=196.07 Aligned_cols=269 Identities=17% Similarity=0.337 Sum_probs=210.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|...|.+++|+.||+.+++|+.|..|.+|+-.-.+ +.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG----~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG----IL 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----ee
Confidence 789999999999777665 4579999999999999999999999999999999999999999999999865532 22
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 384 (526)
. ..|++.|.|+.|+|-...+++++-. ..-+|.......... .....+.+++|..||.+++.|..+|+|.+-
T Consensus 89 k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-------kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 89 K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-------KSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-------hhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 2 3699999999999999999998764 567887665433221 123578999999999999999999999998
Q ss_pred ECCCCceeeEec---CCCCCeEEEEECCCC-----CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 385 DVKSQANVAKFD---GHVGAVTAISFSENG-----YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 385 d~~~~~~~~~~~---~~~~~i~~l~~s~~~-----~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
+- +++....++ +.+.+|.+++|+|+. ..+++..-+. +.+|.+.. +.+..-... .....++.+-++|.
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L--~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRAL--NFDPCCISYFTNGE 235 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccC--CCCchhheeccCCc
Confidence 64 455444443 367799999999963 3555555554 66666543 222211111 45677899999999
Q ss_pred EEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 456 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
|+..|+.+ +++|. ..+..+.++... ...|..++..|++++++.|+.||+|..|++-
T Consensus 236 y~LiGGsdk~L~~fT-----R~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFT-----RDGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCCCceEEEe-----ecCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999998 77776 455666666553 6789999999999999999999999998874
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.5e-22 Score=196.34 Aligned_cols=231 Identities=24% Similarity=0.382 Sum_probs=198.3
Q ss_pred cCCCCCeEE-EEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 220 KTSKPGIVS-LDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 220 ~~~~~~I~~-~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
.+|.+-|.+ +++.+ ++..+++|+.|+++.+|...+..++.++.+|...|.++....++. +++||.|.++++|-..
T Consensus 54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-- 130 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-- 130 (745)
T ss_pred ccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--
Confidence 345566666 77775 555799999999999999999999999999999999999877776 9999999999999754
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
++...+.+|...|+++...|.+ .+++||.|++|++|.- ++.+.++. +|...|+.+++-+++. |++++.
T Consensus 131 ---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-----gHtD~VRgL~vl~~~~-flScsN 198 (745)
T KOG0301|consen 131 ---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-----GHTDCVRGLAVLDDSH-FLSCSN 198 (745)
T ss_pred ---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-----cchhheeeeEEecCCC-eEeecC
Confidence 4566689999999999999887 8999999999999985 66666765 7889999999998754 667889
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
||.|+.|++ +++.+..+.+|...|.+++...++..+++++.|+ ++||+.. .+.+.+..+ ...++++.+-++|..
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgDI 273 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGDI 273 (745)
T ss_pred CceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCCE
Confidence 999999999 8899999999999999999888899999999998 9999976 666666665 458999999989988
Q ss_pred EEEEeCC-eEEEEEe
Q 009763 457 LAVASAD-IRVYQVA 470 (526)
Q Consensus 457 l~~~~~d-i~v~~~~ 470 (526)
++.|++. ++||..+
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 7766666 8888775
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1e-20 Score=182.37 Aligned_cols=253 Identities=16% Similarity=0.161 Sum_probs=187.8
Q ss_pred CeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEE-eCCCcEEEEeCCCCCceee
Q 009763 225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 225 ~I~~~~~s~~~~~l-~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~ 302 (526)
.+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.|++||+.+. ..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---~~ 107 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETR---KV 107 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCC---eE
Confidence 36789999999876 5677889999999999888877765544 5788999999876554 56899999999875 44
Q ss_pred eEecccCccceEEEEEecCCCEEEEEECCC-eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCCCc
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEAL 380 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~ 380 (526)
+..+. +...+.+++|+|++.++++++.++ .+.+||..++........ .....++.|+|++..++++ ..++.
T Consensus 108 ~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 108 LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV------DQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc------CCCccEEEECCCCCEEEEEcCCCCE
Confidence 44443 234578899999999999988775 567789988877655431 1245679999999887654 46899
Q ss_pred EEEEECCCCceeeEecCCC-------CCeEEEEECCCCCEEEEEe-CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 381 VKIWDVKSQANVAKFDGHV-------GAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
|++||+.+++.+..+..+. .....++|+|++++++++. .++ +.+||+++++....+.. ...+.++.|+
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~ 257 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFT 257 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEEC
Confidence 9999999988766654221 1235688999999865543 334 99999998877655533 3468899999
Q ss_pred CCCCEEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 452 HSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 452 ~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
|+|++|++++. + +.+|++ .....+..+.. ....+.++++|
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~----~~~~~~~~~~~---~~~~~~~~~~~ 300 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDV----AALKVIKSIKV---GRLPWGVVVRP 300 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEEC----CCCcEEEEEEc---ccccceeEeCC
Confidence 99999988743 3 999998 45666666653 34557777764
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=7.3e-22 Score=173.18 Aligned_cols=206 Identities=25% Similarity=0.436 Sum_probs=168.1
Q ss_pred ccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCce---------eee---EecccCccceEEEEEec-CCCEEEEE
Q 009763 263 GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY---------DCK---HTLKDHTAEVQAVTVHA-TNKYFVTA 328 (526)
Q Consensus 263 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~---~~~~~h~~~v~~l~~~p-~~~~l~s~ 328 (526)
.|.+.|+++...+ .|+++++|+.||.|.+||++....+ .|+ ..-.+|.-.|..+.|-| |...|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4788999999987 7899999999999999999764321 111 11236788999999998 56688999
Q ss_pred ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc---CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEE
Q 009763 329 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI 405 (526)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 405 (526)
+.|.++++||.++-+....+... ..|++-+++| ...++|+|..+-.|++.|+.+|...+.+.+|.+.|.++
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred cccceEEEeecccceeeEEeecC------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 99999999999999888887632 5688888888 34689999999999999999999999999999999999
Q ss_pred EECCCC-CEEEEEeCCc-EEEEEcCCC-ccceEEecCC------------CCCCeeEEEEcCCCCEEEEEeCC--eEEEE
Q 009763 406 SFSENG-YYLATAAHDG-VKLWDLRKL-KNFRSFESSD------------SETPTNSVDFDHSGSYLAVASAD--IRVYQ 468 (526)
Q Consensus 406 ~~s~~~-~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~------------~~~~i~~i~~s~~~~~l~~~~~d--i~v~~ 468 (526)
.|+|.. ..|++|+.|+ |++||+|.. .++..+..+. +.+.+..++|..+|.++++.+.| +++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 999965 4577888898 999999875 3444443332 35678999999999999988877 99999
Q ss_pred EecccC
Q 009763 469 VASVKA 474 (526)
Q Consensus 469 ~~~~~~ 474 (526)
...+..
T Consensus 275 ~~~G~n 280 (397)
T KOG4283|consen 275 MESGRN 280 (397)
T ss_pred cccCcc
Confidence 865443
No 145
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=1e-21 Score=179.59 Aligned_cols=285 Identities=19% Similarity=0.327 Sum_probs=211.8
Q ss_pred CCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCC---------cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 223 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 223 ~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
..+|.++.|.++.. .++||+.|..|++|.+..+ +....+..|...|+++.|+|+|++|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998766 9999999999999976532 1244677899999999999999999999999999999
Q ss_pred eCC--------C-----CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 009763 293 QGS--------E-----DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 293 d~~--------~-----~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (526)
... + ...+.....+.+|...|..++|+|+++++++++.|..+++||+..|+....+. .|...
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-----dh~~y 167 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-----DHEHY 167 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-----ccccc
Confidence 765 2 23366677788999999999999999999999999999999999999888775 66778
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec----------C---------C----CCCeEEEEECCCCCEEEE
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD----------G---------H----VGAVTAISFSENGYYLAT 416 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------~---------~----~~~i~~l~~s~~~~~l~~ 416 (526)
+..++|.|-+.++++-+.|...+.+++.....+.... . | ......++|+|+|.+|++
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 9999999999999999998877777765433222111 0 1 123456889999999988
Q ss_pred EeCC----c------EEEEEcCCC-ccceEEecCCCCCCeeEEEEc------------------CCCCEEEEEeCC-eEE
Q 009763 417 AAHD----G------VKLWDLRKL-KNFRSFESSDSETPTNSVDFD------------------HSGSYLAVASAD-IRV 466 (526)
Q Consensus 417 ~~~d----~------i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s------------------~~~~~l~~~~~d-i~v 466 (526)
...- + .++|+-... ++...+... ..+...+.|+ |.+..+++++.+ +.|
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 6431 1 345543321 122222221 2233333333 345567788888 999
Q ss_pred EEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 467 YQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
|+. ....++...... |-..++.++|++||.+|+..+.||...+-.+..
T Consensus 326 ydt----q~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 326 YDT----QTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ecc----ccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 986 333344433332 477899999999999999999999877765544
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.5e-22 Score=184.55 Aligned_cols=249 Identities=22% Similarity=0.322 Sum_probs=203.5
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCe
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~ 343 (526)
.+.|+++.|+|...+|++|+.||+++||.+....+ ..+..+.-...+|.+..|+|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 46799999999999999999999999999877543 35555555678999999999998 89999999999999999887
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-E
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-V 422 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i 422 (526)
....-...+. ....+....+++++++|+..+..|.|.+....+++.+.+++ -.+.|..++|+.+|+.|++++.+| |
T Consensus 292 ~~k~~~~~g~--e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 292 VTKLKPPYGV--EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred cccccCCCCc--ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence 5543332211 13467788999999999999999999999999999998887 467899999999999999988888 9
Q ss_pred EEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecc--cCcceeeeeecCCCCCcceEEEEEcC
Q 009763 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
.+||+++..+++.+...+ ...-++++.+++|.|||+|+.. +.||+.+.. .....++..+... ...|+++.|++
T Consensus 369 ~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~Fn~ 445 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQFNH 445 (514)
T ss_pred EEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeeeeCc
Confidence 999999999998887754 3345788889999999999988 999986542 2334455555544 66899999999
Q ss_pred CCCEEEEEeC--CCcEEEeeCCCC
Q 009763 499 DAKYIAVGSM--DRNLRVFGLPGN 520 (526)
Q Consensus 499 ~~~~l~s~~~--dg~v~iw~l~~~ 520 (526)
|+++||.++. +..+++-.+++-
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred chhhhhhhhhccccceEEEeccce
Confidence 9999988764 567888777653
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.9e-22 Score=184.26 Aligned_cols=234 Identities=20% Similarity=0.286 Sum_probs=180.0
Q ss_pred EEEEecC-------CCCEEEEEeCCCcEEEEeCCCCcE---E------------------EEecccccceeEEEEecC-C
Q 009763 227 VSLDIHY-------SKDVIATGGVDTNAVLFDRPSGQI---V------------------TTLSGHSKKVTSVKFVTE-G 277 (526)
Q Consensus 227 ~~~~~s~-------~~~~l~t~~~dg~v~vwd~~~~~~---~------------------~~~~~h~~~V~~l~~~~~-~ 277 (526)
.|+.|.. .|+++|.|+.|..|.|||+.-... . ..-.+|+..|.++.|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666642 367999999999999999742110 0 112379999999999874 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCC
Q 009763 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDG 355 (526)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~ 355 (526)
+.|++||.|.+|++||+.++ ++..++..|...|.++.|+|. ..+|++|+.|+++.+.|.+.... -..+.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk------ 327 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK------ 327 (463)
T ss_pred eeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE------
Confidence 57999999999999999998 788888899999999999994 57899999999999999984221 11221
Q ss_pred CCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCc
Q 009763 356 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK 431 (526)
Q Consensus 356 ~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~ 431 (526)
..+.|-.++|+| ....+++++.||.|+-+|+|.. +++.+++.|.++|.+++++.. ..++++++.++ |++|++....
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 125789999999 5578889999999999999986 899999999999999999885 56788888888 9999987544
Q ss_pred cceEEecCCCCCCeeEEEEcCCCCEE-EEEeCC--eEEEEE
Q 009763 432 NFRSFESSDSETPTNSVDFDHSGSYL-AVASAD--IRVYQV 469 (526)
Q Consensus 432 ~~~~~~~~~~~~~i~~i~~s~~~~~l-~~~~~d--i~v~~~ 469 (526)
..........-+...|+++.|+-.++ +.|+.. ++||++
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 42222211112346778888876554 445555 999997
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=6.1e-22 Score=176.28 Aligned_cols=291 Identities=14% Similarity=0.290 Sum_probs=216.2
Q ss_pred ccccCCCCCeEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCc---EEEEec--ccccceeEEEEecC----CCEEEE
Q 009763 217 PLHKTSKPGIVSLDIHY-----SKDVIATGGVDTNAVLFDRPSGQ---IVTTLS--GHSKKVTSVKFVTE----GDLFLT 282 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~-----~~~~l~t~~~dg~v~vwd~~~~~---~~~~~~--~h~~~V~~l~~~~~----~~~l~s 282 (526)
.+...|..+|..++|++ ....+++.| ...+.+|...... .++.+. .|......++|+-+ ..+++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45667888999999985 234677776 4578889865432 333332 36777888888753 347999
Q ss_pred EeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCee
Q 009763 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 361 (526)
|+.-|.|+|.|+..+ ++...+.+|...|+.+.++|+. ++++++|.|..|++|++++..++..+.+ ..+|...|.
T Consensus 111 ~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~egHrdeVL 185 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--VEGHRDEVL 185 (385)
T ss_pred ecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--cccccCcEE
Confidence 999999999999887 7888899999999999999965 7899999999999999999999998864 568999999
Q ss_pred EEEEccCCcEEEEEeCCCcEEEEECCCCceee----------------------------EecCCCCCeEEEEECCCCCE
Q 009763 362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVA----------------------------KFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------~~~~~~~~i~~l~~s~~~~~ 413 (526)
++.|+++|..|++++.|..+++|++...+... +-..|...|-|+.|. |.+
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 99999999999999999999999997321100 112355566666664 568
Q ss_pred EEEEeCCc-EEEEEcCC-Ccc-------------ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcc
Q 009763 414 LATAAHDG-VKLWDLRK-LKN-------------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW 476 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~-~~~-------------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~ 476 (526)
+++-+.++ |..|..-+ .+. +..+............+|+|-++.|+.|... +.+|+++.....
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~- 342 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP- 342 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-
Confidence 88877777 99998722 111 1222222111223345667889999999887 888887554332
Q ss_pred eeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 477 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
...++........|...+|+.||.+|+..++||.|.-||.
T Consensus 343 -~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 343 -KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred -cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 2233333334678999999999999999999999988875
No 149
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.2e-21 Score=190.01 Aligned_cols=297 Identities=22% Similarity=0.342 Sum_probs=225.5
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
+...+|.++|..++|+|.|.+|++.+.|-+-++|-.-.. ..+..-+-|...++|++|-+....|++|.....+|+|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence 467789999999999999999999999999999975411 2233334678889999999866679999999999999
Q ss_pred eCC-------------------------------------------CCC------------------------------c
Q 009763 293 QGS-------------------------------------------EDG------------------------------N 299 (526)
Q Consensus 293 d~~-------------------------------------------~~~------------------------------~ 299 (526)
+.. +++ .
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 711 000 0
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
+..+..+.||...|.+++.+|+++++++++.. ..|++|+..+-..+..+. +|.-.|+.++|+|||++|++
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEEE
Confidence 12234467899999999999999999999865 358999988877766554 77789999999999999999
Q ss_pred EeCCCcEEEEECCCCc----eeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC--ccceEEecCCCCCCeeE
Q 009763 375 GTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDSETPTNS 447 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~~~~i~~ 447 (526)
.+.|.++.+|...... .....+.|..-|....|+|++.++++++.|. |++|..... +.+..+........++.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 9999999999875432 1233577999999999999999999999998 999998877 55555544555778999
Q ss_pred EEEcCC-----CCEEEEEeCC--eEEEEEeccc-----CcceeeeeecC-CCCCcceEEEEEcCC----------CCEEE
Q 009763 448 VDFDHS-----GSYLAVASAD--IRVYQVASVK-----ADWNCIKTFPD-LSGTGKATCVKFGPD----------AKYIA 504 (526)
Q Consensus 448 i~~s~~-----~~~l~~~~~d--i~v~~~~~~~-----~~~~~~~~~~~-~~~~~~v~~~~~s~~----------~~~l~ 504 (526)
+++.|- +..+++|-.. |.+|...... ..+........ ..+...|+.+.|.|- ...|+
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la 749 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA 749 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEe
Confidence 988762 3356666666 7777764111 12222222222 234678999999964 23579
Q ss_pred EEeCCCcEEEeeCC
Q 009763 505 VGSMDRNLRVFGLP 518 (526)
Q Consensus 505 s~~~dg~v~iw~l~ 518 (526)
+|+.|..++++++.
T Consensus 750 ~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 750 VGGDDESVRIFNVD 763 (764)
T ss_pred eecccceeEEeecc
Confidence 99999999999875
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=8e-22 Score=184.20 Aligned_cols=267 Identities=18% Similarity=0.299 Sum_probs=202.9
Q ss_pred ccCCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCC--cE--EEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 219 HKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSG--QI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~-l~t~~~dg~v~vwd~~~~--~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
+.....++.++.|+....+ +++.+.|..+++|.-... +. +....+. .-.|++......++++|+..+.|+|||
T Consensus 30 ~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 30 HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWD 107 (673)
T ss_pred cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehh
Confidence 3334557999999976653 233455888999964322 22 2233332 334444444457999999999999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-cEE
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LIL 372 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 372 (526)
+... .+.+.+++|...|+++.++....||++++..|.|.|..+.++.....+.. +....|.-+.|++.. .+|
T Consensus 108 l~~k---l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~----~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 108 LRAK---LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI----DSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred hHHH---HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec----CCCCeEEEeecccccceee
Confidence 9865 67788899999999999999999999999999999999999988777753 222457789999954 567
Q ss_pred EEEeCCCcEEEEECCCCceeeEe-cCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEE
Q 009763 373 GTGTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 449 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~ 449 (526)
.+++.+|.|.+||+....++..+ +.|..+...++|+|. ..+|++.+.|. |.+||.+..+....+.. ..+...++
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstva 257 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVA 257 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceee
Confidence 78899999999999888777665 568899999999995 56777888887 99999998777777766 57899999
Q ss_pred EcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCC
Q 009763 450 FDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 500 (526)
Q Consensus 450 ~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 500 (526)
|.++|.+|++|+..++|+.++.. ....++.....| ...|++++|-+..
T Consensus 258 f~~~G~~L~aG~s~G~~i~YD~R-~~k~Pv~v~sah--~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 258 FSECGTYLCAGNSKGELIAYDMR-STKAPVAVRSAH--DASVTRVAFQPSP 305 (673)
T ss_pred ecCCceEEEeecCCceEEEEecc-cCCCCceEeeec--ccceeEEEeeecc
Confidence 99999999999998555444332 223445555554 6779999997654
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=172.81 Aligned_cols=244 Identities=17% Similarity=0.255 Sum_probs=185.2
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE
Q 009763 268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 347 (526)
Q Consensus 268 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (526)
..|+.|++.|.+|++|+.||.|.|||+.+- ..-+.+.+|..+|++++|+++|+.|+++|.|..|.+||+..|.++..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 789999999999999999999999999886 56677889999999999999999999999999999999999999888
Q ss_pred eecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCC----CCCeEEEEECCCCCEEEEEeCCc-
Q 009763 348 VSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGH----VGAVTAISFSENGYYLATAAHDG- 421 (526)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~~~~~d~- 421 (526)
+.. +++|..+.||| +.+.+++.-.+..-.+.++..++....-... +....+..|.+.|+++++|...|
T Consensus 103 irf------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 103 IRF------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred EEc------cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 853 46899999999 4444444444444555555543221111111 11223446889999999999999
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEeccc---C--cceeeeeecCCCCCcceEEE
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK---A--DWNCIKTFPDLSGTGKATCV 494 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~---~--~~~~~~~~~~~~~~~~v~~~ 494 (526)
+.++|..+.+++..+.... ...|..+.|+..|++|+.-+.| ||.|++.... . ..+....+........-.++
T Consensus 177 llv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 9999999999998887753 3679999999999999999999 9999874211 1 11111222222223345678
Q ss_pred EEcCCCCEEEEEeC-CCcEEEeeCCCCC
Q 009763 495 KFGPDAKYIAVGSM-DRNLRVFGLPGND 521 (526)
Q Consensus 495 ~~s~~~~~l~s~~~-dg~v~iw~l~~~~ 521 (526)
+|+.+|.|++.|+. -..++||.-..+.
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcc
Confidence 99999999988874 3579999877654
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=181.00 Aligned_cols=268 Identities=22% Similarity=0.329 Sum_probs=200.8
Q ss_pred eCCCCcEEEEecccccceeEEEEecCC--CEEEEEeCCCcEEEEeCCCC-CceeeeEecccCccceEEEEEecCC-CEEE
Q 009763 251 DRPSGQIVTTLSGHSKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSED-GNYDCKHTLKDHTAEVQAVTVHATN-KYFV 326 (526)
Q Consensus 251 d~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~ 326 (526)
|+.+-.....++-+.+.|++++|+|.. +++++|..-|.|-+||+.+. ....-+..+..|..+|.+|.|+|.+ ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 333344455566788999999999954 57889999999999999532 2235566778899999999999954 6899
Q ss_pred EEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce-eeEecCCCCCeEEE
Q 009763 327 TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAI 405 (526)
Q Consensus 327 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l 405 (526)
+.|.||+|++-|++.+.....+.. ......+..+.|+.+...++.|+.=|.+.+||++++.. ...+..|...|+++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhc---CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 999999999999998754433331 12234677888888777777777777999999998755 55667788899999
Q ss_pred EECCC-CCEEEEEeCCc-EEEEEcCCCccceE--EecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceee
Q 009763 406 SFSEN-GYYLATAAHDG-VKLWDLRKLKNFRS--FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCI 479 (526)
Q Consensus 406 ~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~--~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~ 479 (526)
+++|. ..+|++++.|+ .+|||+|+...-.. +....|...|.++.|+|++-.|++.+.| |+||+..-........
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 99995 57888999998 99999998665443 5555668899999999998888888887 9999973211222222
Q ss_pred eeecCC-CCCc--ceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 480 KTFPDL-SGTG--KATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 480 ~~~~~~-~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..+... .+.. ......|.|+..++++|..-..|-||+-.++.
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 222211 1111 23456899999999999999999999987765
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.4e-21 Score=176.27 Aligned_cols=282 Identities=17% Similarity=0.292 Sum_probs=201.7
Q ss_pred EEEEecCCCCEEEEEeCCC-----cEEEEeCCCCcEEEEecccc----cceeEEEEec-------CCCEEEEEeCCCcEE
Q 009763 227 VSLDIHYSKDVIATGGVDT-----NAVLFDRPSGQIVTTLSGHS----KKVTSVKFVT-------EGDLFLTGSADKTVR 290 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~dg-----~v~vwd~~~~~~~~~~~~h~----~~V~~l~~~~-------~~~~l~s~s~dg~i~ 290 (526)
-.+.+-|+.++|+++-.+. .|+||+-..... +..|. ..-.|++|.. .|+++|.|+.|..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL---YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcce---eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 3455667777777775432 255565433111 11122 2335777753 367999999999999
Q ss_pred EEeCCCCCceeeeEe------------------cccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 009763 291 VWQGSEDGNYDCKHT------------------LKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDA 351 (526)
Q Consensus 291 iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (526)
|||+.-.....+..+ -.+|+..|..++|+.. .+.|++||.|.+|++||+.++++...+.
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-- 283 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-- 283 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--
Confidence 999754322111111 2368889999999764 4689999999999999999999998886
Q ss_pred CCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcC
Q 009763 352 GTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 352 ~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~ 428 (526)
.|...|.++.|+| ...+|++|+.|++|.++|.|........-...+.|-.++|.|.. ..++++.+|| |+-+|+|
T Consensus 284 ---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 284 ---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 4567899999999 67899999999999999999543322222245689999999964 5666777778 9999999
Q ss_pred CC-ccceEEecCCCCCCeeEEEEcCCCC-EEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCC-CEE
Q 009763 429 KL-KNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA-KYI 503 (526)
Q Consensus 429 ~~-~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 503 (526)
+. +++.++..| ..+|.++++++.-. ++++++.+ +++|++............+. -+...|+++.|+- -.|
T Consensus 361 ~~~~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~----~~rl~c~~~~~~~a~~l 434 (463)
T KOG0270|consen 361 NPGKPVWTLKAH--DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK----LGRLHCFALDPDVAFTL 434 (463)
T ss_pred CCCCceeEEEec--cCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc----ccceeecccCCCcceEE
Confidence 86 778888877 67999999998754 56667777 99999965444333333332 3346777888764 457
Q ss_pred EEEeCCCcEEEeeCCCCCC
Q 009763 504 AVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 504 ~s~~~dg~v~iw~l~~~~~ 522 (526)
+.|+..+.++|||+..+.+
T Consensus 435 a~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 435 AFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred EecCccceEEEeecccChh
Confidence 8888888999999976643
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=7.2e-22 Score=175.82 Aligned_cols=245 Identities=21% Similarity=0.323 Sum_probs=189.0
Q ss_pred CCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCC
Q 009763 221 TSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 221 ~~~~~I~~~~~s~~----~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~ 295 (526)
.|......++|+.+ ..++|+||.-|.|+|.|+.+++....+.+|...|+.+.|+|+. ++++++|.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36667788888764 3489999999999999999999999999999999999999954 689999999999999999
Q ss_pred CCCceeeeEec---ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC---------------------
Q 009763 296 EDGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA--------------------- 351 (526)
Q Consensus 296 ~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------------- 351 (526)
+. .|+..+ .+|.+.|.++.|+++|.+|++++.|.++++|++...+....+...
T Consensus 167 ~~---~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TD---VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CC---eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 97 566554 579999999999999999999999999999999844321111100
Q ss_pred --CCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC-CCc-------------eeeEecCCCCCeEEEE--ECCCCCE
Q 009763 352 --GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-SQA-------------NVAKFDGHVGAVTAIS--FSENGYY 413 (526)
Q Consensus 352 --~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~i~~l~--~s~~~~~ 413 (526)
....|...|-|+.|- |.++++-+.++.|..|... -.+ .+..+.-....|.-+. |.+-+++
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 122344555555554 5788888889999999872 111 1233333445565554 4556889
Q ss_pred EEEEeCCc-EEEEEcCCCccc--eEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEe
Q 009763 414 LATAAHDG-VKLWDLRKLKNF--RSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVA 470 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~~~~~--~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 470 (526)
|+.|...| |.+||++...+. .++..+.....|...+|+.+|.+|+..+++..||.++
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 99999998 999999987653 2333333467899999999999999999998888874
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=7.5e-21 Score=172.26 Aligned_cols=249 Identities=17% Similarity=0.330 Sum_probs=187.8
Q ss_pred cccccceeEEEEecCC--CEEEEEeCCCcEEEEeCCCC-------------CceeeeEecccCccceEEEEEecCC-CEE
Q 009763 262 SGHSKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSED-------------GNYDCKHTLKDHTAEVQAVTVHATN-KYF 325 (526)
Q Consensus 262 ~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~~p~~-~~l 325 (526)
..|.+.++.+.-.+-+ .+.++-+..|.|.||++... ...+++.++.+|...=+.|+|+|-. ..+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577888888877654 45666678999999996431 2246788889999999999999933 358
Q ss_pred EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCe
Q 009763 326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAV 402 (526)
Q Consensus 326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i 402 (526)
++|..-+.|++|...++.....-. ...+|...|-.++|+| ....|++++.||+|+|||+|.+. .....+.|.+.|
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~--Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQR--PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccCccccceEeeeeccCceeecCc--cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 888888999999999876544322 2457889999999999 56899999999999999999882 222337899999
Q ss_pred EEEEECCCCCEEEEEeCCc-EEEEEcCCC---ccceEEecCCCCCCeeEEEEcCCC-CEEEEEeCC--eEEEEEecccCc
Q 009763 403 TAISFSENGYYLATAAHDG-VKLWDLRKL---KNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKAD 475 (526)
Q Consensus 403 ~~l~~s~~~~~l~~~~~d~-i~iwd~~~~---~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~ 475 (526)
+-|.|+.+-.+|++|+++| ++|||+|+. +++..|..| ..+|+++.|+|.. ..|++++.| +.+|++......
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 9999999888999999999 999999874 466778777 7899999999854 455555555 999999653320
Q ss_pred -------cee-----eeeecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEe
Q 009763 476 -------WNC-----IKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVF 515 (526)
Q Consensus 476 -------~~~-----~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw 515 (526)
... ..-+..|.+...+..+.|+++ ..+|++.+.|| +.||
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 000 111223444667888999985 45788888888 4444
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=2.3e-20 Score=165.93 Aligned_cols=276 Identities=18% Similarity=0.263 Sum_probs=201.3
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCc------------EEEEec-ccccceeEEEEe-------cCCCEEEEEeC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ------------IVTTLS-GHSKKVTSVKFV-------TEGDLFLTGSA 285 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~------------~~~~~~-~h~~~V~~l~~~-------~~~~~l~s~s~ 285 (526)
...+.|+|||..|++-+.|..+.+|++...- ....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4578899999999999999999999875310 011111 123457788886 56778999999
Q ss_pred CCcEEEEeCCCCCceeeeEecccCccc---eEEEEEecCCCEEEEEECCCeEEEEeC-CCCeEEEEe--ecCCCCCCCCC
Q 009763 286 DKTVRVWQGSEDGNYDCKHTLKDHTAE---VQAVTVHATNKYFVTASLDNTWCFYDL-SSGICLTQV--SDAGTDGRPEG 359 (526)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~l~s~s~dg~i~iwd~-~~~~~~~~~--~~~~~~~~~~~ 359 (526)
+.-|++||.-++.. ++......|... ..+++|+|||.+|++| ....|++||+ +.|..-... ...+..+..+-
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999988632 222222345544 4689999999999876 5679999999 444322111 11113345677
Q ss_pred eeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCcc-ceE
Q 009763 360 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKN-FRS 435 (526)
Q Consensus 360 v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~-~~~ 435 (526)
+.|++|+| +...+++|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|.... |..||+|..+. +..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 89999999 667999999999999999888999999999999999999999999999998764 99999997543 333
Q ss_pred EecCCC-CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC
Q 009763 436 FESSDS-ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 508 (526)
Q Consensus 436 ~~~~~~-~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 508 (526)
+..+.. ...-.-...+|+|++|++|+.+ |++|+++.. .+.+..+..+ ...++.++++|--.++++++.
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~---gn~~sv~~~~--sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL---GNEVSVTGNY--SDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC---CCcccccccc--cccccceecCcccceeeeccC
Confidence 333321 1222234557899999999888 999998432 3333444433 678999999999888887764
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.4e-22 Score=203.83 Aligned_cols=282 Identities=17% Similarity=0.301 Sum_probs=213.0
Q ss_pred EEEecCCCC-EEEEE----------eCCCcEEEEeCCC--C----cEEEEecccccceeEEEEecCCCE----EEEEeCC
Q 009763 228 SLDIHYSKD-VIATG----------GVDTNAVLFDRPS--G----QIVTTLSGHSKKVTSVKFVTEGDL----FLTGSAD 286 (526)
Q Consensus 228 ~~~~s~~~~-~l~t~----------~~dg~v~vwd~~~--~----~~~~~~~~h~~~V~~l~~~~~~~~----l~s~s~d 286 (526)
.++|+|.+. ++++| +.+.++-||.+.. . +.+..+. -....+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467787775 55554 2344555665432 2 1233333 2456789999986664 8888999
Q ss_pred CcEEEEeCCC---CCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 287 KTVRVWQGSE---DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 287 g~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
|.|.+||... +.....+.+...|++.|..+.|++.. +.+++|+.||.|.|||++..+...... .....+.|.+
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~ 166 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKC 166 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceE
Confidence 9999999765 34456677778899999999999955 599999999999999999865544442 2234578999
Q ss_pred EEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCC--CeEEEEECCCC-CEEEEEeCC-c---EEEEEcCCCc-cc
Q 009763 363 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVG--AVTAISFSENG-YYLATAAHD-G---VKLWDLRKLK-NF 433 (526)
Q Consensus 363 ~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~-~~l~~~~~d-~---i~iwd~~~~~-~~ 433 (526)
++|+. ...+|++++.+|.+.|||+|..+.+..+..+.+ .+..++|+|++ ..|+++++| + |.+||+|... +.
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 99998 567899999999999999999988887765543 57899999975 455555555 3 9999999754 45
Q ss_pred eEEecCCCCCCeeEEEEcCCC-CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC-EEEEEeCC
Q 009763 434 RSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMD 509 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 509 (526)
+.+..| ...|.++.|.+.+ .+|++++.| +.+|+. .+.+.+..+... ...+..+.|.|..- .+++++-|
T Consensus 247 k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~----~tgEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 247 KILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNP----NTGEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred hhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecC----CCceEeeecCCC--CcceeeeeecCCCcchhhhheec
Confidence 555454 7789999999977 888888888 777775 556777777663 67899999999654 78889999
Q ss_pred CcEEEeeCCCCC
Q 009763 510 RNLRVFGLPGND 521 (526)
Q Consensus 510 g~v~iw~l~~~~ 521 (526)
|.|-||.+.+..
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999998765
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=7.8e-21 Score=180.77 Aligned_cols=253 Identities=19% Similarity=0.270 Sum_probs=186.9
Q ss_pred EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC-----CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeE
Q 009763 260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-----DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 334 (526)
Q Consensus 260 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i 334 (526)
++..|...|..+.|++....|++++.||++++|+++. ....+++.+|.+|.++|.|+++.+++.++++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5667889999999999999999999999999999932 23468899999999999999999999999999999999
Q ss_pred EEEeCCCC------eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC--CCCCeEEEE
Q 009763 335 CFYDLSSG------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--HVGAVTAIS 406 (526)
Q Consensus 335 ~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~ 406 (526)
+.|++... .-...+.. ...+|...++.+++|+....|++++.||+++.|+.....+ .+|.. ..+...++.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~-~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSG-TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhcc-ceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 99966522 11112211 1348889999999999888899999999999999876655 33432 223344555
Q ss_pred ECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCC-----CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcce
Q 009763 407 FSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDS-----ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN 477 (526)
Q Consensus 407 ~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~ 477 (526)
|-... .++++...-+ -.++|+.....+..+..... ...+..+.++|.+.+.+++..+ +++++. ....
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn----~~~~ 522 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN----KTGK 522 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc----cccc
Confidence 54322 1222211112 33444444444443333211 2457789999999999999998 999986 5555
Q ss_pred eeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 478 CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 478 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.+.....| ...++++++.|+|-+|++++.||.+++|.+...
T Consensus 523 ~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 523 ILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 56555554 778999999999999999999999999998654
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.2e-20 Score=166.90 Aligned_cols=290 Identities=13% Similarity=0.204 Sum_probs=213.6
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------CcEEEEec-ccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------GQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~------~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
...|.+.|.++.|+.++++|++|+.|..++||++.. .+++.... .|...|.|++|...+.++++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 456889999999999999999999999999999753 24444433 46689999999998999999999999999
Q ss_pred EeCCCCCceeeeEecc--cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCeeEEEEcc-
Q 009763 292 WQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP- 367 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~- 367 (526)
-|+++. +.+..+. ...+.|+.+..+|..+.|++.+.+|.|.+||.+... ....+... ........+.|+|
T Consensus 132 HDiEt~---qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A---N~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 132 HDIETK---QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA---NSGKNFYTAEFHPE 205 (609)
T ss_pred eecccc---eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec---CCCccceeeeecCC
Confidence 999986 4444432 233489999999999999999999999999998765 22222211 2335688899999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCc-eeeEe------cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecC
Q 009763 368 DGLILGTGTSEALVKIWDVKSQA-NVAKF------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 368 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~------~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 439 (526)
...+|++.+..+-+-+||.+... ++... ......-.++.|+|+|..|.+--... -.+||+-+.++......+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 56889999999999999998653 22221 11122335788999999988876665 677888775543222221
Q ss_pred CC-----CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcce-------------------eeeeecCCCCCcceEE
Q 009763 440 DS-----ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN-------------------CIKTFPDLSGTGKATC 493 (526)
Q Consensus 440 ~~-----~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~ 493 (526)
.. ...+.+++|..+.. +++|+.+ +.+|.+......+- .+..+.+| ...++.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH--RSv~NQ 362 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH--RSVPNQ 362 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc--cccccc
Confidence 11 23567788875544 7788877 99998854322111 12233444 677889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 494 VKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 494 ~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
+.|+|...+|++.+....+++|+-
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeecCCcceEeccchhhheecccc
Confidence 999999999999999999999974
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.3e-20 Score=177.27 Aligned_cols=249 Identities=21% Similarity=0.302 Sum_probs=194.5
Q ss_pred EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCE-EEEEECCCeEE
Q 009763 257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWC 335 (526)
Q Consensus 257 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~i~ 335 (526)
+...+.||++.|.+|...|.|.+|++|+.||+|+||.+.++ .|+.++. ..+.|.|++|+|.++. ++.+..+..+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence 34567899999999999999999999999999999999998 8888875 5578999999997653 33333334455
Q ss_pred EEeCCCCeEE----------------------EEeecC----------CCCCCCCCeeEEEEccCCcEEEEEeCC---Cc
Q 009763 336 FYDLSSGICL----------------------TQVSDA----------GTDGRPEGYTSAAFHPDGLILGTGTSE---AL 380 (526)
Q Consensus 336 iwd~~~~~~~----------------------~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~ 380 (526)
|.+..-|..+ .+.... ....|...|..+.||..|.+|++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 5543222100 000000 011355789999999999999997654 46
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
|.|+++...+...-|....+.|.++.|+|...+|++++...|+|||+.+...++.+... ...+.+++++|.|.-|++|
T Consensus 548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEe
Confidence 89999987776667766778899999999999999999999999999988777776654 5689999999999999999
Q ss_pred eCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 461 SAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 461 ~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
+.+ +..|+++...+.+ +++..| ...+++++|++.-.++++|+.||.+.||-
T Consensus 626 s~d~k~~WfDldlsskPy---k~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPY---KTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred cCCCeeEEEEcccCcchh---HHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999 7778886554444 344443 77899999999999999999999999874
No 161
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=161.00 Aligned_cols=260 Identities=18% Similarity=0.280 Sum_probs=186.2
Q ss_pred EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc--eeeeEecccCccceEEEEEecCCCEEE-EEECCCeEE
Q 009763 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN--YDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWC 335 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~ 335 (526)
..+++|.+.|++++|+.||++|++++.|++|++|++..-.+ .++++.-- .-+..+.+.|.||-+-++ ++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35789999999999999999999999999999999875321 12222111 112467889999876554 445566799
Q ss_pred EEeCCCCe---EEEEeec----CCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEEC
Q 009763 336 FYDLSSGI---CLTQVSD----AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 336 iwd~~~~~---~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (526)
+|.+...+ ....+.. .-...|...+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+..+.|
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99764321 1111110 0122345566677777788999999999999999998 88888888777777889999
Q ss_pred CCCCEEEEEeCCc-EEEEEcCC---C---ccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCc---c
Q 009763 409 ENGYYLATAAHDG-VKLWDLRK---L---KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD---W 476 (526)
Q Consensus 409 ~~~~~l~~~~~d~-i~iwd~~~---~---~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~---~ 476 (526)
|+|+++++++-.- |++|..-- + +..+.+...+|...|..++|+++...+++.+.| .+||+.+..... .
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998876 99998632 2 223445555568899999999999999999999 999998653322 2
Q ss_pred eeeeee--cCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 477 NCIKTF--PDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 477 ~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..++.. ..+...+....++.+|.|+.|+.+. ...+++|....++
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGK 363 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCc
Confidence 222222 1122234456899999999888764 5578888776654
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9e-19 Score=149.92 Aligned_cols=270 Identities=18% Similarity=0.277 Sum_probs=194.6
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCC---------C-cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPS---------G-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~---------~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
|.+-+++|.+++|++|..+|.|.++.+.+ + ..+...++|.++|..++|+ ..+|++|+ ||.|+-|...
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 55667899999999999999999998753 1 3355668999999999997 45677766 4999999875
Q ss_pred CCCc---eeeeEe--cccCc-----cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEE
Q 009763 296 EDGN---YDCKHT--LKDHT-----AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 365 (526)
Q Consensus 296 ~~~~---~~~~~~--~~~h~-----~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 365 (526)
.... .+.... ...|. -.|+++...|..+.++.++.|+.++-||+++|+....+. +|...+.++.-
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-----GHtDYvH~vv~ 164 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-----GHTDYVHSVVG 164 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-----CCcceeeeeee
Confidence 5321 000000 11122 368999999988888888899999999999999988887 77888999988
Q ss_pred ccCCcEEEEEeCCCcEEEEECCCCceeeEecC---------CC-CCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceE
Q 009763 366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDG---------HV-GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRS 435 (526)
Q Consensus 366 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------~~-~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~ 435 (526)
-.....+++|++||++++||.++++.+..+.. |. ..|-+++. +..+|++|+.-.+.+|.++..++...
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCV 242 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEE
Confidence 66666789999999999999999999887743 11 24566665 56699998877799999999999998
Q ss_pred EecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEE
Q 009763 436 FESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLR 513 (526)
Q Consensus 436 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~ 513 (526)
+.. ...+..+.|..+ ..|+.|-.+ +.-|.+ ........... ....++..|+.. -++|-.++....+.
T Consensus 243 fpi---pa~v~~v~F~~d-~vl~~G~g~~v~~~~l-----~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~ 311 (325)
T KOG0649|consen 243 FPI---PARVHLVDFVDD-CVLIGGEGNHVQSYTL-----NGVLQANIPVE--STACYSASWQTSPIKFISIAGFSNKLH 311 (325)
T ss_pred Eec---ccceeEeeeecc-eEEEeccccceeeeee-----ccEEEEeccCC--ccceeeecccCCceEEEEecccceeee
Confidence 887 467888888633 344444233 888876 22222222221 223455555433 35566677777777
Q ss_pred Eee
Q 009763 514 VFG 516 (526)
Q Consensus 514 iw~ 516 (526)
|+.
T Consensus 312 i~~ 314 (325)
T KOG0649|consen 312 ILK 314 (325)
T ss_pred eee
Confidence 763
No 163
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3.7e-18 Score=166.69 Aligned_cols=273 Identities=12% Similarity=0.210 Sum_probs=183.6
Q ss_pred EEEEeCCCcEEEEeCCC-Cc--EEEEecccccceeEEEEecCCCEEEEEe-CCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 238 IATGGVDTNAVLFDRPS-GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 238 l~t~~~dg~v~vwd~~~-~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
+++...++.|.+|++.+ ++ .+..+. +.+....+.++|++++|++++ .++.|.+|++...+.+....... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 33 445554 345678899999999887664 58899999997433333333332 33456
Q ss_pred EEEEEecCCCEEEEEEC-CCeEEEEeCCCCe-EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEEECCCCc
Q 009763 314 QAVTVHATNKYFVTASL-DNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA 390 (526)
Q Consensus 314 ~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~ 390 (526)
..+.++|+++++++++. ++.|.+|++++.. ....... . .+.....+++++|+++++++++ .++.|.+||+.+..
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--I-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--c-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 78999999998888775 8899999997432 1111110 0 1113466788999998886554 56899999997633
Q ss_pred eee-------EecCCCCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcCC--Cc--cceEEecCC----CCCCeeEEEEcCC
Q 009763 391 NVA-------KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRK--LK--NFRSFESSD----SETPTNSVDFDHS 453 (526)
Q Consensus 391 ~~~-------~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~--~~--~~~~~~~~~----~~~~i~~i~~s~~ 453 (526)
.+. ... .......+.|+|+|++++++.. ++ |.+||+.. ++ .+..+.... .......+.|+|+
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 111 2235678999999999988876 34 99999974 22 233332211 1122346889999
Q ss_pred CCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC-CCcEEEeeCCC
Q 009763 454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-DRNLRVFGLPG 519 (526)
Q Consensus 454 ~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~l~~ 519 (526)
|++++++... +.+|+++........+..... ......+.|+|||++|++++. ++.|.+|+++.
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9999998653 999998654433444444332 124557899999999998775 89999998864
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=8.5e-20 Score=166.36 Aligned_cols=230 Identities=23% Similarity=0.338 Sum_probs=179.3
Q ss_pred EecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCc----eeeeEecccCccceEEEEEecC-CCEEEEEECCCe
Q 009763 260 TLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNT 333 (526)
Q Consensus 260 ~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~ 333 (526)
.+.||+++|..++|+| +...+++||.|.+|.||.+..++. .+.+..+.+|...|..+.|||. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999 566799999999999999876532 3567788999999999999995 478999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCC-CeEEEEECCCCC
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGY 412 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~ 412 (526)
|.+||+.+|..+..+ .|+..|.++.|+-||.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|..+|.
T Consensus 156 v~iWnv~tgeali~l------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred EEEEeccCCceeeec------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 999999999988876 3778999999999999999999999999999999999988877765 345566888888
Q ss_pred EEEEEeCC---c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCC
Q 009763 413 YLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDL 485 (526)
Q Consensus 413 ~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~ 485 (526)
++.+|-.. . +-+||-.+......+...+....|.---|+++...++.++.. |+-|.+.....-...+.+|..
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S- 308 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS- 308 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc-
Confidence 66665433 2 999998876655444444445667777789999888876654 999998543333334444433
Q ss_pred CCCcceEEEEEcC
Q 009763 486 SGTGKATCVKFGP 498 (526)
Q Consensus 486 ~~~~~v~~~~~s~ 498 (526)
..+-..+.|-|
T Consensus 309 --~epQRG~g~mP 319 (472)
T KOG0303|consen 309 --KEPQRGMGFMP 319 (472)
T ss_pred --CCccccccccc
Confidence 33334455544
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6e-20 Score=171.75 Aligned_cols=266 Identities=15% Similarity=0.241 Sum_probs=195.3
Q ss_pred CCcEEEEeCCCCcEEEEecccc--cceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCC-ceeeeEecccCccceEEEEEe
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDG-NYDCKHTLKDHTAEVQAVTVH 319 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~ 319 (526)
...+++||.........+..|+ ..+.+++|.....+ +++.+.|..+++|.-.... ....+....+ ..-.|++..
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~ 88 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACA 88 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhh
Confidence 4579999987765554444333 34899999875542 3334568889999754321 1222232222 244566655
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC
Q 009763 320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399 (526)
Q Consensus 320 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 399 (526)
....|+++|+..+.|+|||++...+...+. +|...|+++.++....+||+++..|.|.|..+.++.....|....
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-----dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLK-----DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhcc-----CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 566899999999999999999665555544 777899999999999999999999999999999988777776553
Q ss_pred C-CeEEEEECCCCCE-EEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC-EEEEEeCC--eEEEEEeccc
Q 009763 400 G-AVTAISFSENGYY-LATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVK 473 (526)
Q Consensus 400 ~-~i~~l~~s~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~ 473 (526)
+ .|.-+.|++..++ |.+++++| |.+||.....++..+... |..+...|+|+|... +|++.+.| |.+||...
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~-HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-- 240 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA-HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-- 240 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-ccCCcCcceecCCccceEEEecccceEEEeeccc--
Confidence 4 5668999997665 55567778 999999988877666543 478899999999765 55566777 77777632
Q ss_pred CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCCC
Q 009763 474 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPS 524 (526)
Q Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~~ 524 (526)
......+.. ..+...++|+++|.+|+.|+..|.|..||+.+.+.|.
T Consensus 241 --~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 241 --QASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred --ccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 222222221 4578999999999999999999999999999888764
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=7.2e-20 Score=176.33 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=179.6
Q ss_pred EEEec---CCCEEEEEeCCCcEEEEeCCCCCce---eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE
Q 009763 271 VKFVT---EGDLFLTGSADKTVRVWQGSEDGNY---DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344 (526)
Q Consensus 271 l~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~ 344 (526)
..|++ ....|+.+..||.|.++|....... ..+.....|...|..+.|-|....|++++.|.++++||++++..
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55654 3457999999999999997653110 12345567999999999999777899999999999999999887
Q ss_pred EEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCce--------------------e-------eEec
Q 009763 345 LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN--------------------V-------AKFD 396 (526)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~--------------------~-------~~~~ 396 (526)
+..-. ..+|...|.+++|+| +...|++|+.||.|.|||++-... . ....
T Consensus 135 ~G~~~---~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 135 VGGRL---NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eccee---ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 76632 238889999999999 678999999999999999874320 0 0111
Q ss_pred CCCCCeEE---EEECCCCCEEEEEeC-Cc-EEEEEcCCCccceEEe------cCCC---CCCeeEEEEcCCCCEEEEEeC
Q 009763 397 GHVGAVTA---ISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFE------SSDS---ETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 397 ~~~~~i~~---l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~------~~~~---~~~i~~i~~s~~~~~l~~~~~ 462 (526)
.+...|.+ +.+..|...|++++. |+ |+|||+|+........ .+.+ ...+.++..+..|.+|++.+.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 23334444 445567788888877 77 9999999865432221 1111 345788889999999999888
Q ss_pred CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCCC
Q 009763 463 DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPS 524 (526)
Q Consensus 463 di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~~ 524 (526)
|..||.++........+..+.++.....-..-..+||+.+|++|+.|...++|.+.....+.
T Consensus 292 D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 292 DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 84444443333444455555554323333344678999999999999999999998877654
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=3.6e-19 Score=155.99 Aligned_cols=270 Identities=19% Similarity=0.334 Sum_probs=194.9
Q ss_pred CCcEEEEeCCCC--cE-EEEecccccceeEEEEec-CCCEEEEEeCC-------CcEEEEeCCCCCc------eeeeEec
Q 009763 244 DTNAVLFDRPSG--QI-VTTLSGHSKKVTSVKFVT-EGDLFLTGSAD-------KTVRVWQGSEDGN------YDCKHTL 306 (526)
Q Consensus 244 dg~v~vwd~~~~--~~-~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d-------g~i~iwd~~~~~~------~~~~~~~ 306 (526)
|+.|.+.++..+ .+ -..|..|.+.|+.++-+| +.++|+++..+ ..+.||.+..... ++++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 677777766543 22 235667889999999999 55566666542 2467998865421 3444445
Q ss_pred c-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCeeEEEEcc--CCcEEEEEeCCCcEE
Q 009763 307 K-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVK 382 (526)
Q Consensus 307 ~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~ 382 (526)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.......+....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 4 4556899999999999988876 88999999998776 44444333334566788999999 78888775 589999
Q ss_pred EEECCCCceeeEec-CCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCcc-ceEEecCCCCCCeeEEEEcCC-CCEE
Q 009763 383 IWDVKSQANVAKFD-GHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDHS-GSYL 457 (526)
Q Consensus 383 iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~-~~~l 457 (526)
.||+|+.+....+. .|...|..+.|+|+. .+|++|++|+ |+|||.|+.+. +..+. +|...+.++.|+|. .+++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEEEEEEecCccceEE
Confidence 99999988777764 477789999999985 5677888888 99999998653 44444 44779999999996 4667
Q ss_pred EEEeCC--eEEEEEecccCc-------------------------ceeeeeecCCCCCcceEEEEEcC-CCCEEEEEeCC
Q 009763 458 AVASAD--IRVYQVASVKAD-------------------------WNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMD 509 (526)
Q Consensus 458 ~~~~~d--i~v~~~~~~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d 509 (526)
++|+.| +.+|........ -..+.++.. |...|.+++||. |.-.+|+-+.|
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccC
Confidence 788888 777765332210 012223334 478899999987 56678889999
Q ss_pred CcEEEeeCCC
Q 009763 510 RNLRVFGLPG 519 (526)
Q Consensus 510 g~v~iw~l~~ 519 (526)
|+|.|=.++.
T Consensus 353 GRviIs~V~r 362 (370)
T KOG1007|consen 353 GRVIISSVPR 362 (370)
T ss_pred ceEEeecCCh
Confidence 9998877653
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=4e-19 Score=180.04 Aligned_cols=291 Identities=18% Similarity=0.316 Sum_probs=213.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccc---ccceeEEEEec--CCCEEEEEeCCCcEEEEeCCCC--
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH---SKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSED-- 297 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h---~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~-- 297 (526)
.-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4556788998899999988889999999999988877644 35688999876 4568999999999999974332
Q ss_pred CceeeeEecccC-------ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CC
Q 009763 298 GNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG 369 (526)
Q Consensus 298 ~~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 369 (526)
+..+.+....+- .+.=.-+.|..+..+|+++|.-..|+|||......+..+.. +....++++.-+- .|
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~----~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY----GSSTLVTALSADLVHG 1221 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----CCCccceeecccccCC
Confidence 222333332221 11113456777777788777788999999998887777642 3345566665544 57
Q ss_pred cEEEEEeCCCcEEEEECCCCc---eeeEecCCCCC--eEEEEECCCCCE-EEEEeCCc-EEEEEcCCCccc--eEEecCC
Q 009763 370 LILGTGTSEALVKIWDVKSQA---NVAKFDGHVGA--VTAISFSENGYY-LATAAHDG-VKLWDLRKLKNF--RSFESSD 440 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~l~~s~~~~~-l~~~~~d~-i~iwd~~~~~~~--~~~~~~~ 440 (526)
+++++|..||.|++||.|... .+...+.|+.. |..+.+.++|.- |++|+.+| |++||+|..... ..+..+.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999999999999998753 46667778776 999999998765 99999999 999999984222 2222221
Q ss_pred C-CCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeee---eecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 441 S-ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIK---TFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 441 ~-~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
. ++..+++..++....+|+|+.. ++||++.... ...++ .|.+ ...+.+.|++|+|-.-.||+|+.|..|.||
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~--l~~~k~n~~F~~-q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ--LNIIKYNPGFMG-QRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCcceEEEEecChhh--hcccccCccccc-CcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 1 2358999999999999999977 9999974321 11111 1111 124678999999999999999999999999
Q ss_pred eCCCCCC
Q 009763 516 GLPGNDA 522 (526)
Q Consensus 516 ~l~~~~~ 522 (526)
..+.+..
T Consensus 1379 s~~k~~~ 1385 (1387)
T KOG1517|consen 1379 SCEKPRL 1385 (1387)
T ss_pred ecCCcCC
Confidence 9876543
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.9e-17 Score=166.78 Aligned_cols=289 Identities=27% Similarity=0.536 Sum_probs=225.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-EEEEeccccc-ceeEEEE-ecCCC-EEEEEeC-CCcEEEE
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSK-KVTSVKF-VTEGD-LFLTGSA-DKTVRVW 292 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~-~~~~~~~h~~-~V~~l~~-~~~~~-~l~s~s~-dg~i~iw 292 (526)
....|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 345678899999999999999999999999999998876 6667766443 7777777 77777 5555444 9999999
Q ss_pred eCCC-CCceeeeEecccCccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc
Q 009763 293 QGSE-DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (526)
Q Consensus 293 d~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 370 (526)
+... . .....+..|...|..+.|+|++.++++++. |+.+++|++..+..+..+. .|...+.+++|+|++.
T Consensus 140 ~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 140 DLSTPG---KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----GHTDPVSSLAFSPDGG 211 (466)
T ss_pred EecCCC---eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----cCCCceEEEEEcCCcc
Confidence 9986 3 566777889999999999999998888886 9999999999877777765 4678899999999987
Q ss_pred -EEEEEeCCCcEEEEECCCCceee-EecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc-ceEEecCCCCCCee
Q 009763 371 -ILGTGTSEALVKIWDVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTN 446 (526)
Q Consensus 371 -~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~ 446 (526)
++++++.|+.|++||...+.... .+.+|.... ...|++++.++++++.++ +++||++.... ...+ ..+...+.
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~ 288 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVL 288 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEE
Confidence 55555899999999998777777 677777765 448999998888888888 99999987765 4444 23367899
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEE-eCCCcEEEeeCCCCC
Q 009763 447 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG-SMDRNLRVFGLPGND 521 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~l~~~~ 521 (526)
++.|+|++..+++++.+ +.+|+... ...........+...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLET----GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCC----CceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 99999999888888887 88996532 2222222211124468889884333455555 688999999987654
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=3.8e-19 Score=158.20 Aligned_cols=247 Identities=16% Similarity=0.259 Sum_probs=178.4
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc---------eeeeEecc-cCccceEEEEEe-------cCCCEEEEEEC
Q 009763 268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN---------YDCKHTLK-DHTAEVQAVTVH-------ATNKYFVTASL 330 (526)
Q Consensus 268 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~~~~~~-~h~~~v~~l~~~-------p~~~~l~s~s~ 330 (526)
...+.|+|||..|++-+.|..+++|++....- ......++ .....|...+|- |+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34588999999999999999999999754210 01111111 123456666663 67789999999
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEEC-CCCceee--E-e----cCCCCCe
Q 009763 331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV-KSQANVA--K-F----DGHVGAV 402 (526)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-~~~~~~~--~-~----~~~~~~i 402 (526)
+.-|.+||.-+|+....+........-....+++|+|||..|++|. ...|++||+ |.|.... . + .+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999999998877765332222233567899999999999885 578999999 5553211 1 1 2346788
Q ss_pred EEEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcce
Q 009763 403 TAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWN 477 (526)
Q Consensus 403 ~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~ 477 (526)
.+++|+|. ...+++++... +-||.-....++..+..+ .+.|+.+.|.++|+.|++|... |-.||+.. ...
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh--~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~---~~~ 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH--GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY---SRD 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc--CCCeeeEEeccCcCeecccccCCCeEEEEeehh---ccc
Confidence 99999995 45888888876 667766667777666544 7899999999999999999765 99999943 333
Q ss_pred eeeeecCCCC-CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 478 CIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 478 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.+..+..|.. ...=.-+...|++++|++|+.||.|++||+..-
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 4444444422 111223455789999999999999999999873
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=9.3e-20 Score=175.12 Aligned_cols=123 Identities=19% Similarity=0.243 Sum_probs=101.3
Q ss_pred ccccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCcEE------EEecccccceeEEEEecCCCEEEEEeCCCcE
Q 009763 217 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIV------TTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~~~~~------~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 289 (526)
.+...|.+.|+.+.|+|- ..+||||+.|..|+||.+..|... ..+.+..-.|-++.|+|..+-|+..+..|++
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 467789999999999994 558999999999999998844221 1233345568899999965545555566999
Q ss_pred EEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC
Q 009763 290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 342 (526)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~ 342 (526)
+|||+.++ +.+..+.+|...|.+..|+.||.++++++.|+.|+|||.+..
T Consensus 153 ~i~D~stq---k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 153 YITDISTQ---KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred EEEEcccC---ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccC
Confidence 99999987 778888999999999999999999999999999999998753
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=5e-20 Score=175.33 Aligned_cols=219 Identities=22% Similarity=0.311 Sum_probs=180.4
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--------CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEE
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 290 (526)
...|.+.|.++.|++....|++++.||++.+|+++. -+++.+|.+|.++|.|+++.+++..+++|+.||+|+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence 456788999999999999999999999999999832 256889999999999999999999999999999999
Q ss_pred EEeCCCCCc-------eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC------------
Q 009763 291 VWQGSEDGN-------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA------------ 351 (526)
Q Consensus 291 iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------ 351 (526)
.|++..... ......+.||++.|+.+++|+....|++++.||+++.|+...... ..+...
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 997653211 133456789999999999999999999999999999999765433 111000
Q ss_pred ---------------------------------C--CCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec
Q 009763 352 ---------------------------------G--TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 396 (526)
Q Consensus 352 ---------------------------------~--~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 396 (526)
. .......+.-+.++|.+.+.+++..|+.|+++|..+++.+....
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee
Confidence 0 00111346678889999999999999999999999999999999
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 397 ~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
.|...++++++.|+|-+|++++.|+ +++|.+....++.....
T Consensus 529 a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred eccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 9999999999999999999999998 99999876655544433
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.4e-18 Score=172.17 Aligned_cols=295 Identities=17% Similarity=0.257 Sum_probs=217.1
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC----CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
.....|.-.++|.++||+++++|+|..||.|.+|.--. ....+.+.-|...|+++.|+++|.+|++|+..|.+.+|
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 35566766799999999999999999999999996432 23356777899999999999999999999999999999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC------CCCCCeeEEEEc
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD------GRPEGYTSAAFH 366 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~ 366 (526)
.+.+++ ..-+..-.++|..+.++|++.+.+....|..|.+....+......+...... ....-.+.++++
T Consensus 279 q~~T~~----kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 279 QLETGK----KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred eecCCC----cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 998863 3334556789999999999999999999999999987665544444322111 123456788999
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCceeeEecC-----------CCCCeEEEEECCCCCEEEEEe--------CCc---EEE
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQANVAKFDG-----------HVGAVTAISFSENGYYLATAA--------HDG---VKL 424 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----------~~~~i~~l~~s~~~~~l~~~~--------~d~---i~i 424 (526)
|..+.++..+..|.|.+||+-+.+.+..+.. +.-.++.++.+-+|.++++.- .++ +++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 9777788888899999999988877666521 123577788888899999873 233 889
Q ss_pred EEcCCCcc----ceEEecCCCCCC-eeEEEEcCCCC-EEEEEeCC--eEEEEE------ecccCcceeeeeecCCCCCcc
Q 009763 425 WDLRKLKN----FRSFESSDSETP-TNSVDFDHSGS-YLAVASAD--IRVYQV------ASVKADWNCIKTFPDLSGTGK 490 (526)
Q Consensus 425 wd~~~~~~----~~~~~~~~~~~~-i~~i~~s~~~~-~l~~~~~d--i~v~~~------~~~~~~~~~~~~~~~~~~~~~ 490 (526)
|-...... ...+.. +|... +..+.+++... .+++++.+ ++||.+ ......|.+...-. .|..+
T Consensus 435 W~~n~~~kt~~L~T~I~~-PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s--y~k~~ 511 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINN-PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS--YHKTP 511 (792)
T ss_pred EEEcCCcceeEEEEEEec-CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec--cccCc
Confidence 97654332 222222 22333 33333444433 67777666 999998 44445666655433 25789
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 491 ATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 491 v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+++++|+.||..|+ .+.|+.|.+||...
T Consensus 512 i~a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 512 ITALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred ccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence 99999999997555 55799999999977
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3e-20 Score=190.57 Aligned_cols=240 Identities=20% Similarity=0.335 Sum_probs=191.2
Q ss_pred CCeEEEEecCCCC----EEEEEeCCCcEEEEeCCC---C---cEEEEecccccceeEEEEecC-CCEEEEEeCCCcEEEE
Q 009763 224 PGIVSLDIHYSKD----VIATGGVDTNAVLFDRPS---G---QIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVW 292 (526)
Q Consensus 224 ~~I~~~~~s~~~~----~l~t~~~dg~v~vwd~~~---~---~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iw 292 (526)
...+.++|.+.|. +||.|..||.|.+||... + ..+.++..|.+.|..+.|++. +++|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 3567889988765 489999999999999754 2 346677889999999999995 4599999999999999
Q ss_pred eCCCCCceeeeEec--ccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 293 QGSEDGNYDCKHTL--KDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 293 d~~~~~~~~~~~~~--~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
|+..... -.++ ....+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+... .....+..+.|||+.
T Consensus 145 Dlnn~~t---P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~---~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 145 DLNKPET---PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT---PGRMHCSVLAWHPDH 218 (1049)
T ss_pred ccCCcCC---CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC---CCccceeeeeeCCCC
Confidence 9977421 1111 235578999999864 457888999999999999999887777643 222458899999965
Q ss_pred -cEEEEEeCCC---cEEEEECCCC-ceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCCC
Q 009763 370 -LILGTGTSEA---LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 370 -~~l~~g~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 442 (526)
..+++++.|. .|.+||+|.. .+++.+++|...|.++.|++.+ .+|++++.|+ |.+|+..+++.+..+... .
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~ 296 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--G 296 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--C
Confidence 4555555543 6999999864 5777888999999999999966 8888999998 999999999998888774 6
Q ss_pred CCeeEEEEcCCCC-EEEEEeCC--eEEEEEec
Q 009763 443 TPTNSVDFDHSGS-YLAVASAD--IRVYQVAS 471 (526)
Q Consensus 443 ~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~ 471 (526)
.++..+.|.|... .+++++-+ |.||.+..
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 7899999999876 56666666 88888754
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=3.9e-19 Score=170.88 Aligned_cols=208 Identities=15% Similarity=0.241 Sum_probs=149.5
Q ss_pred cceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEee--cCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEEC
Q 009763 311 AEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVS--DAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV 386 (526)
Q Consensus 311 ~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~ 386 (526)
..|+.+.|.| |...|++++.||.|++|.+..+....... ......|...|+++.||| ....|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3578888988 66789999999999999987654322111 011236678999999999 6689999999999999999
Q ss_pred CCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--
Q 009763 387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-- 463 (526)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-- 463 (526)
++++....+.+|.+.|..++|+|+|+.+++.+.|+ |++|+-++......-........-..|.|.-+|+++++.+.|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 99999999999999999999999999999999999 999999876543221111113445678899999999988776
Q ss_pred ----eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEeeCCCCC
Q 009763 464 ----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 464 ----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~l~~~~ 521 (526)
+.+|+........-....+.. ...+.--.+.+|.. ++++|-.|..|.+|.+-...
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~lDv---aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVLDV---APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeeecc---cCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 778876332211111111111 11111123455555 46677789999999986543
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=2.3e-18 Score=153.20 Aligned_cols=233 Identities=19% Similarity=0.228 Sum_probs=184.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
..+|+|.+|++++..+|++.....|.||..... +..+++..|...|+.++|+|..+.|++|+.|..-+||....++.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 468999999999999999999999999987654 46788999999999999999999999999999999999977788
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
++....+..|...++++.|+|.++.|++|+.-..|.||-++....-..-+.. ...+.+.|.+++|||++-+|++|+.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi-kkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI-KKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh-CCccccceeeeeccCCcceecccccCc
Confidence 8888888889999999999999999999999999999988765432221111 224557899999999999999999999
Q ss_pred cEEEEECC-----C-------------CceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc-ceEEecC
Q 009763 380 LVKIWDVK-----S-------------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESS 439 (526)
Q Consensus 380 ~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~ 439 (526)
..++|..- . |..+..+....+.+..+.|+|+|..|+-.+.|. +.+-|...... +......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99999641 1 122333334567899999999999999988887 88888776542 2222222
Q ss_pred CCCCCeeEEEEcCCCCEEE
Q 009763 440 DSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~~~l~ 458 (526)
.-+..++.|-.....++
T Consensus 249 --~lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 249 --QLPLLSVSWISENSVVA 265 (361)
T ss_pred --cCCceeeEeecCCceee
Confidence 34566666654443333
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=3.8e-17 Score=148.35 Aligned_cols=286 Identities=17% Similarity=0.280 Sum_probs=204.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC--CcEEEEeCCCCCce
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD--KTVRVWQGSEDGNY 300 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~ 300 (526)
...|..+.|+.+...|..|+.|| .++|+................|.-+-|+ ..+++..+.+ +.++++++...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~--- 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK--- 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC---
Confidence 45678888999999999999887 6777766543322222223345555564 4566655554 34889988764
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe--CC
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--SE 378 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~--~d 378 (526)
..+..+. ...+|.++.++ .+.|+++-.+ .|+|||+++.+.+.++... ..+...+.++.+++.+.+++.-+ ..
T Consensus 79 ~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETT--PPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred ceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhcc--CCCccceEeeccCCCCceEEecCCCCC
Confidence 2333322 45678889885 4556665554 4999999999999888642 13445677778887878888643 46
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
|.|.+||+.+-+++..+..|.+.+-+++|+++|.+|+++++.| ||||.+.+++.+..|........|.+++|+|++++
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 8999999999999999999999999999999999999999998 99999999999999887665677999999999999
Q ss_pred EEEEeCC--eEEEEEecccCccee------------------------------eeeecC--CCCCc--ceEEEEEcCCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNC------------------------------IKTFPD--LSGTG--KATCVKFGPDA 500 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~------------------------------~~~~~~--~~~~~--~v~~~~~s~~~ 500 (526)
|++.++. |+||.++........ .+.|.. ....+ .+..+.-.+..
T Consensus 233 L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~ 312 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKI 312 (391)
T ss_pred EEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCC
Confidence 9988877 999988642211000 000000 00011 22222223467
Q ss_pred CEEEEEeCCCcEEEeeCCCC
Q 009763 501 KYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 501 ~~l~s~~~dg~v~iw~l~~~ 520 (526)
..+..++.||.++.|.++-.
T Consensus 313 ~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 313 PRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CEEEEEEcCCeEEEEEcCCC
Confidence 78899999999999999764
No 178
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=5.1e-20 Score=171.13 Aligned_cols=273 Identities=20% Similarity=0.325 Sum_probs=219.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
+-..+.++.+|..++.|+..|.|-.+|+.++++...+.. ...|.++.|..+.++|+++-. ..+.|||-.. ..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G----tElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNG----TELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCC----cEEe
Confidence 446889999999999999999999999999999888774 456999999988888777654 6899999655 4566
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 384 (526)
.++.| ..|..+.|.|..-+|++++..|.+..-|+.+|+.+..+.. ..+.+..++-+|-...+-+|..+|+|.+|
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-----~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-----GAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-----cCCccchhhcCCccceEEEcCCCceEEec
Confidence 66655 5689999999988999999999999999999999888762 23578888999988999999999999999
Q ss_pred ECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
...+.+++..+-.|.++|.++++.++|+|+++++.|. ++|||+|+...+.++.. ..+...++||..|.+.++-+..
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~SqkglLA~~~G~~ 355 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKGLLALSYGDH 355 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCccccccccccceeeecCCe
Confidence 9999999999999999999999999999999999998 99999999887777665 4577888888766554444444
Q ss_pred eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 009763 464 IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLR 513 (526)
Q Consensus 464 i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 513 (526)
+.||.=... ........+-.|...+.|..+.|.|-...|-.|-..|.-.
T Consensus 356 v~iw~d~~~-~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 356 VQIWKDALK-GSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred eeeehhhhc-CCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 999953221 1112223344454567899999999777777766555433
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=4.9e-19 Score=153.34 Aligned_cols=282 Identities=15% Similarity=0.188 Sum_probs=194.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
.+.|.+.|+++.|..++. |.+|..-|.|++|++.+......+. .|...|+.+.-.|+ ..|.+-+.|+.+.+|++...
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 447888999999998665 8889999999999999988888888 57788999988887 46889999999999998764
Q ss_pred CceeeeEecccCccceEEEEEec-----CCC----EEEEEECCC-eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHA-----TNK----YFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p-----~~~----~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
. +.. .|.-.++++.|.+ .++ .++.-+... .+.+-|......+..... ......+.+.|..+.-
T Consensus 88 ~-~i~-----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 88 A-FIS-----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQDKDH 160 (323)
T ss_pred c-eEE-----EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-hhccccCceeeeeccc
Confidence 2 122 2333444444432 221 111111110 012222222222222211 1223345666666443
Q ss_pred -CC--cEEEEEeCCCcEEEEECCCCcee----------eEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC--c
Q 009763 368 -DG--LILGTGTSEALVKIWDVKSQANV----------AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--K 431 (526)
Q Consensus 368 -~~--~~l~~g~~dg~i~iwd~~~~~~~----------~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~ 431 (526)
++ -++++|.++|.|.+||+.++..+ .....|..+|.++.|.+.-..=++|+.+. +..|.+... .
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 23 46778899999999999987433 33346888999999987544444555544 888877543 2
Q ss_pred cc--eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 432 NF--RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 432 ~~--~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
.. ..+... ...+..+.+-||++.+++++.| ||||.+ .+.+++..+..| .+.|++++|+|+...+|+++
T Consensus 241 lq~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVysw----rtl~pLAVLkyH--sagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 241 LQIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSW----RTLNPLAVLKYH--SAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred ccccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEe----ccCCchhhhhhh--hcceeEEEeCCCCchhhhcc
Confidence 21 122222 4568889999999999999999 999999 667777777776 78999999999999999999
Q ss_pred CCCcEEEeeC
Q 009763 508 MDRNLRVFGL 517 (526)
Q Consensus 508 ~dg~v~iw~l 517 (526)
.|++|.+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1e-18 Score=159.35 Aligned_cols=213 Identities=17% Similarity=0.255 Sum_probs=166.5
Q ss_pred eEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeec--CCCCCCCCCeeEEEEcc-CCcEEEEEeCC
Q 009763 303 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFHP-DGLILGTGTSE 378 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~g~~d 378 (526)
.-.+.+|+++|..++|+| +.+.|++||.|.+|.||.+..+.....+.. ....+|...|-.+.||| -.+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 334579999999999999 556899999999999999976644332221 11237888999999999 56899999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
..|.+||+.+++.+.++. |...|.++.|+.||.+|++.+.|. |+|||.++++.+..-..|. +.....+.|-.+|.++
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-G~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-GAKPARAIFLASGKIF 231 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc-CCCcceeEEeccCcee
Confidence 999999999999998988 999999999999999999999998 9999999999988775554 4456677788889866
Q ss_pred EEEeCC-----eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEeeCCCCC
Q 009763 458 AVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLRVFGLPGND 521 (526)
Q Consensus 458 ~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~l~~~~ 521 (526)
-+|.+. +-+|+-+..... -....+. ....|.---|.+|.++++.+| .|+.||.|.+....
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP-~~~~elD---tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEP-IALQELD---TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCc-ceeEEec---cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 666543 888986433322 2222332 245566667888988887665 69999999997754
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2e-16 Score=159.33 Aligned_cols=284 Identities=30% Similarity=0.556 Sum_probs=219.9
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeC
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQG 294 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~-dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~ 294 (526)
.....|...|.+++|+|++.++++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|++||.
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 345678889999999999998888885 99999999998889999999999999999999998 5555599999999987
Q ss_pred CCCCceeeeE-ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 295 SEDGNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 295 ~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
..+ .... .+.+|...+ ...|+|++.++++++.|+.+++|++..... ...+ ..|...+.++.|+|++..+
T Consensus 229 ~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 229 STG---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-----SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred CCC---cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-----ecCCccEEEEEECCCCCEE
Confidence 744 4455 577888875 448999998999999999999999987765 3333 2556789999999988888
Q ss_pred EEEeCCCcEEEEECCCCceeeEec--CCCCCeEEEEECCCCCEEEEE-eCCc-EEEEEcCCCccceEEecCCCCCCeeEE
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATA-AHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 448 (526)
++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..++ +.+|++........... ...+..+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~ 376 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSV 376 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEE
Confidence 889999999999998887666665 677779999994333556655 4566 88899988772222222 2228889
Q ss_pred EEcCCCCEEEE-EeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 449 DFDHSGSYLAV-ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 449 ~~s~~~~~l~~-~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
.+.+ ...+.. +..+ +.+|+. ...........+ ...+....+++++..+++++.++.+++|++..
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDL----STGSLLRNLDGH--TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEec----ccCeeeeeccCC--CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9988 633333 3444 899987 333333333321 16888999999999999999999999999876
No 182
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7e-18 Score=149.35 Aligned_cols=209 Identities=19% Similarity=0.321 Sum_probs=162.9
Q ss_pred ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc--CCcEEEEEeCCCcEEEE
Q 009763 307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIW 384 (526)
Q Consensus 307 ~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iw 384 (526)
.+|.+-|+++.|.+.|+.+++|+.|++++|||.+........... -..|.+.|..+.|.+ -|..+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee-EEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 478899999999999999999999999999997654322222211 226778899999966 68999999999999999
Q ss_pred ECC---------CCceeeEecCCCCCeEEEEECCC--CCEEEEEeCCc-EEEEEcCCCc------cceEEe-----cCCC
Q 009763 385 DVK---------SQANVAKFDGHVGAVTAISFSEN--GYYLATAAHDG-VKLWDLRKLK------NFRSFE-----SSDS 441 (526)
Q Consensus 385 d~~---------~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~-i~iwd~~~~~------~~~~~~-----~~~~ 441 (526)
.-. ......++....+.|+.+.|.|. |-.|++++.|| ++||+.-..- ....+. ...+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 752 11234456667789999999995 88899999999 9999865432 222222 1123
Q ss_pred CCCeeEEEEcCC---CCEEEEEeCC-------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC----CCEEEEEe
Q 009763 442 ETPTNSVDFDHS---GSYLAVASAD-------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD----AKYIAVGS 507 (526)
Q Consensus 442 ~~~i~~i~~s~~---~~~l~~~~~d-------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~ 507 (526)
..+..|+.|+|. ..+|++|+.+ +.||.+......|..+.++.+| ..+|++++|.|+ -.+||+++
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH--TDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC--CCcceeeeeccccCCceeeEEEee
Confidence 557789999975 4788888775 8999998877788888888875 889999999995 35799999
Q ss_pred CCCcEEEeeCCC
Q 009763 508 MDRNLRVFGLPG 519 (526)
Q Consensus 508 ~dg~v~iw~l~~ 519 (526)
.|| |+||.+..
T Consensus 247 kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 247 KDG-VRIFKVKV 257 (361)
T ss_pred cCc-EEEEEEee
Confidence 999 99999974
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=5.4e-18 Score=155.38 Aligned_cols=248 Identities=19% Similarity=0.294 Sum_probs=186.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--------C--------CcEEEEecccccceeEEEEecCCCEEE
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--------S--------GQIVTTLSGHSKKVTSVKFVTEGDLFL 281 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~--------~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~ 281 (526)
....|...|+++.|+|+|+++|+|+.+|.|.+|... + ......+.+|...|..++|+|++.+++
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 456788999999999999999999999999999765 2 234556779999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEee------cCCC--
Q 009763 282 TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS------DAGT-- 353 (526)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~-- 353 (526)
+++.|+.+++||+..+ .....+.+|...|..++|.|-++++++-+.|...+.+.+...+.+.... ....
T Consensus 140 s~s~dns~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeccceEEEEEeccc---eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 9999999999999987 7788889999999999999999999999999877777776554433322 0000
Q ss_pred ----------CCCCCCeeEEEEccCCcEEEEEeC----CC-----cEEEEECCC-CceeeEecCCCCCeEEEEECC----
Q 009763 354 ----------DGRPEGYTSAAFHPDGLILGTGTS----EA-----LVKIWDVKS-QANVAKFDGHVGAVTAISFSE---- 409 (526)
Q Consensus 354 ----------~~~~~~v~~~~~~~~~~~l~~g~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~---- 409 (526)
.........++|+|+|.++++... .+ ..++|+-+. .++...+.....+...+.|+|
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 011223456889999999988642 22 234444332 134444444444555555544
Q ss_pred --------------CCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 410 --------------NGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 410 --------------~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
-+..++.++.+.|.+||..+..++...... |-..++.++|+++|.+|+..+.| ..+..+
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred eccccccccccccccceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 234577888888999999998887766543 35789999999999999999999 444444
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=177.15 Aligned_cols=282 Identities=18% Similarity=0.213 Sum_probs=213.8
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|...|+|+.|...|.++++|+.|..|+||...++.+...+.||.+.|+.++.+.++.++++++.|..|++|.+..+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~- 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG- 264 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC-
Confidence 4578889999999999999999999999999999999999999999999999999999989999999999999999987
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.++..+.+|++.|++++|+|-. +.+.||++++||.+-...+..-... ......-+.++.|...+.-+++|+.|
T Consensus 265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~-~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL-KFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC-CcccccceeeeeccccccccccccCC
Confidence 7788889999999999999854 7789999999998821111111111 11222456777888888889999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
+.-..|.+..- ..+...+.-+.++.+- .+.+++-.+- +.+|++.++...+....+ ...+..+.++|-+..
T Consensus 338 ~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--sd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 338 GEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--SDEVYVLDVHPFNPR 409 (1113)
T ss_pred cccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--ccceeeeeecCCCcH
Confidence 98887765421 1122222222222222 3445555554 899999999888877766 567888999997766
Q ss_pred EE-EEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 457 LA-VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 457 l~-~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
++ .++.| ..||++- ....++.+.. +.+.+....||+||..++....-|.+.|.....++.
T Consensus 410 i~msag~dgst~iwdi~----eg~pik~y~~--gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIW----EGIPIKHYFI--GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhhccCCCceEeeecc----cCCcceeeec--ccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 55 56666 8899883 2333333332 256778889999999999888889999998766543
No 185
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=163.13 Aligned_cols=301 Identities=18% Similarity=0.287 Sum_probs=223.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-ccccceeEEEEec--CCCEEEEEeCCCcEEEEeC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~ 294 (526)
-...|.+.|..+.|+..|..+++|+.|..|.+||+..+.....+. ||...|....|.| +..-+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 356789999999999999999999999999999999888776654 7999999999988 3446999999999999887
Q ss_pred CCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCC-CCCCCCeeEEEEcc-CCcE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGT-DGRPEGYTSAAFHP-DGLI 371 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~ 371 (526)
...+..+....+..|.++|..++.-|+. .-|.+++.|+.+.-+|++.+.....+..... ....-....++.+| +...
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 6655445566677899999999999966 4689999999999999988765544431101 01113578899999 5569
Q ss_pred EEEEeCCCcEEEEECCCCce------eeEec------CCCCCeEEEEECCCCCEEEEEeCC-cEEEEEcCCCc-------
Q 009763 372 LGTGTSEALVKIWDVKSQAN------VAKFD------GHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLK------- 431 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~~~~~------~~~~~------~~~~~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~------- 431 (526)
+++|+.|-.+++||.+.-.. +..+- ...-.|++++|+.++.-|.++..| .|++|.-..+.
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 99999999999999875321 22221 223479999999765555444444 59999533221
Q ss_pred -----cceE-EecCCCCCCeeEEEE-cCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEE
Q 009763 432 -----NFRS-FESSDSETPTNSVDF-DHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIA 504 (526)
Q Consensus 432 -----~~~~-~~~~~~~~~i~~i~~-s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 504 (526)
..+. ++.|.....|..+-| -|...|+++|+..++||.|+. +....+..+.+- ...|+|+.-+|--..||
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K--~t~eii~~MegD--r~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK--KTGEIIRFMEGD--RHVVNCLEPHPHLPVLA 452 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec--chhHHHHHhhcc--cceEeccCCCCCCchhh
Confidence 1222 566665666777765 678889988887744444432 445555555554 33899999999999999
Q ss_pred EEeCCCcEEEeeCCCCCC
Q 009763 505 VGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 505 s~~~dg~v~iw~l~~~~~ 522 (526)
++|-|..|+||.-.+.+.
T Consensus 453 sSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 453 SSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ccCCccceeeecCCcccc
Confidence 999999999998755443
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=2.9e-17 Score=164.40 Aligned_cols=270 Identities=19% Similarity=0.215 Sum_probs=190.6
Q ss_pred CCcEEEEeCCCC-cEEEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCc--eeeeE-ecccCccceEEEEE
Q 009763 244 DTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN--YDCKH-TLKDHTAEVQAVTV 318 (526)
Q Consensus 244 dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~h~~~v~~l~~ 318 (526)
++.+.||++... .+...+. ....|.+++|+| +..+++.|+.+|.|.+||+..... ...+. ....|..+++.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 357999998875 3444444 567899999999 677889999999999999987643 11121 22368899999999
Q ss_pred ecCC--CEEEEEECCCeEEEEeCCCCeEEEEeec-C------CCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCC
Q 009763 319 HATN--KYFVTASLDNTWCFYDLSSGICLTQVSD-A------GTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS 388 (526)
Q Consensus 319 ~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~------~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~ 388 (526)
..+. .-|++++.||.|..|+++.-........ . ........++++.|.+ +.+.|++|+.+|.|.--+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 6543 4599999999999998875433111110 0 0112345789999999 778999999999988744322
Q ss_pred C--------ceeeEecCCCCCeEEEEECCCCCE-EEEEeCCcEEEEEcC-CCccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 389 Q--------ANVAKFDGHVGAVTAISFSENGYY-LATAAHDGVKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 389 ~--------~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~d~i~iwd~~-~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
. +....+..|.++|+++.++|=+.. +.++++.+|+||... ...++..+... ...+++++|||....++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc--cceeeeeEEcCcCceEE
Confidence 2 123345668899999999996544 444454459999987 55666555544 45699999999886655
Q ss_pred EEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 459 VASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 459 ~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+... + +.|||+... ...++.+.... ....+.+.|++.|+.|++|+..|.+++|++...
T Consensus 458 ~~~d~~G~l~iWDLl~~--~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQD--DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEcCCCceehhhhhcc--ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5444 4 888888543 23333333332 456678899999999999999999999999643
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=146.74 Aligned_cols=236 Identities=19% Similarity=0.268 Sum_probs=181.5
Q ss_pred CCCCCeEEEEecCCC-----CEEEEEeCCCcEEEEeCCC--CcEE--EEe-----cccccceeEEEEec-CCCEEEEEeC
Q 009763 221 TSKPGIVSLDIHYSK-----DVIATGGVDTNAVLFDRPS--GQIV--TTL-----SGHSKKVTSVKFVT-EGDLFLTGSA 285 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~-----~~l~t~~~dg~v~vwd~~~--~~~~--~~~-----~~h~~~V~~l~~~~-~~~~l~s~s~ 285 (526)
.|.=+++.+.|.|+. ++|||.+ ..+++|.+.. .+.. ..+ ..+..++++..|+. +.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 466689999999976 3666654 4799998863 2211 111 24667899999987 7788999999
Q ss_pred CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE
Q 009763 286 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (526)
|-+..|||++.+........+-.|..+|..++|...+ +.|+++|.||.+++||++.......+.... ....+...++
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC--CCCCcceeec
Confidence 9999999999863333455667899999999998754 589999999999999999877666555321 2246788899
Q ss_pred Ecc-CCcEEEEEeCC-CcEEEEECCCC-ceeeEecCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCcc------c
Q 009763 365 FHP-DGLILGTGTSE-ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN------F 433 (526)
Q Consensus 365 ~~~-~~~~l~~g~~d-g~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~------~ 433 (526)
|++ |-+++|+-..| ..|.|.|+|.. .++..+.+|.+.|+.++|.|. ...|+++++|. +.+||+...-. +
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 998 66888876555 57999999975 678899999999999999995 67899999998 99999976432 2
Q ss_pred eEEecCCCCCCeeEEEEcC-CCCEEEEEeCC
Q 009763 434 RSFESSDSETPTNSVDFDH-SGSYLAVASAD 463 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d 463 (526)
..+. ....|+.+.|++ .+.+++++..+
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC
Confidence 2222 267899999996 56788887765
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3.3e-16 Score=152.98 Aligned_cols=265 Identities=15% Similarity=0.198 Sum_probs=173.0
Q ss_pred CCeEEEEecCCCCEEEEEe-CCCcEEEEeCC-CCcE--EEEecccccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCCC
Q 009763 224 PGIVSLDIHYSKDVIATGG-VDTNAVLFDRP-SGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDG 298 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~-~dg~v~vwd~~-~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~ 298 (526)
+....++++|++++|++++ .++.|.+|++. ++.. +.... ..+....+.|+|++++|++++. ++.|.+|++...+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4567889999999887664 58899999986 3433 22222 2345678999999998888764 8899999997533
Q ss_pred ce-eeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEee-cCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 299 NY-DCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVS-DAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 299 ~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
.. ..+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.... .............+.|+|+|++++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 21 2233332 234567888999999886655 56999999998743322100 00000011346789999999999888
Q ss_pred eC-CCcEEEEECCC--C--ceeeEecCC------CCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCcc----ceEEec
Q 009763 376 TS-EALVKIWDVKS--Q--ANVAKFDGH------VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN----FRSFES 438 (526)
Q Consensus 376 ~~-dg~i~iwd~~~--~--~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~----~~~~~~ 438 (526)
.. ++.|.+||+.. + +.+..+... ......+.|+|+|++|+++... + |.+|++..... +..+..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999973 2 223333211 1123468899999999998654 4 99999865432 222222
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEE
Q 009763 439 SDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 439 ~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
......+.|+|+|++|++++.. +.+|.++........+..+.. .....++.|
T Consensus 273 ---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~---g~~P~~~~~ 327 (330)
T PRK11028 273 ---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV---GQGPMWVSV 327 (330)
T ss_pred ---cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc---CCCceEEEE
Confidence 2346689999999999988753 999988654444444444432 233455554
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.4e-17 Score=140.36 Aligned_cols=239 Identities=12% Similarity=0.177 Sum_probs=175.8
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC-------ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG-------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (526)
.|.+-+|+|.+++|++|..+|.|.+..+.... ....+...++|.++|+.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 46667899999999999999999999875421 123455668999999999998 55666665 599999986
Q ss_pred CCCeE------EEEeecC-CC-CCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCC
Q 009763 340 SSGIC------LTQVSDA-GT-DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 411 (526)
Q Consensus 340 ~~~~~------~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (526)
+.... +...... .. ...--.|+++...|..+-++.++.|+.++-||+.+|+....+++|...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54322 1111100 00 0112368899999976666666689999999999999999999999999999985556
Q ss_pred CEEEEEeCCc-EEEEEcCCCccceEEecCCCC--------CCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeee
Q 009763 412 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSE--------TPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKT 481 (526)
Q Consensus 412 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--------~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~ 481 (526)
..+++|+.|| +++||+++.+.+..+....+. ..| .+..-+..+|++|+.. +.+|++. ..++...
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~lslwhLr----sse~t~v 242 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLSLWHLR----SSESTCV 242 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCceeEEecc----CCCceEE
Confidence 6788999998 999999999998888765432 223 4445577899998887 9999994 3444455
Q ss_pred ecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 482 FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 482 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
|.. .+++..+.|.. ..+++++..+.|.-|.+.+
T Consensus 243 fpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 243 FPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred Eec---ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 543 55677888854 4567777777788887754
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=9.1e-18 Score=158.76 Aligned_cols=260 Identities=18% Similarity=0.229 Sum_probs=185.0
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEE-e-------cCCCEEEEEeCCCcEEEEe
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKF-V-------TEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~-~-------~~~~~l~s~s~dg~i~iwd 293 (526)
|...+.|+.|+.+...+.+++ |..+.+|.--+......+.-...-|....+ - ...+.|+.++.||.+.|.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 344567888987777666655 556666653332222222211111111111 1 1234688899999999987
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
-.. +....+..|.+.|.+-.|+|+|.-|++++.||.|++|.-. |....++. ....+|+|++|.|+.+-++
T Consensus 92 k~~----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~-----Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 92 KSA----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVV-----QNEESIRCARWAPNSNSIV 161 (737)
T ss_pred ccc----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHh-----hcCceeEEEEECCCCCceE
Confidence 543 5666778899999999999999999999999999999843 33322222 2235899999999775544
Q ss_pred EEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
.+. .+.+.|=.+.....+..++.|.+-|.++.|++...++++|+.|- .++||-.. ..+.. ...+..+|++++|.|
T Consensus 162 ~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~--S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 162 FCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFT--SAAEEYAITSVAFNP 237 (737)
T ss_pred Eec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-ccccc--CChhccceeeeeecc
Confidence 432 46777777777777888899999999999999999999999997 99999754 33333 333478999999999
Q ss_pred CCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 009763 453 SGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 453 ~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 514 (526)
+ ..+++++.+ .+ +... ..+.|..++||+||..++.|+..|.|.+
T Consensus 238 d-~~~~v~S~nt~R----------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 238 E-KDYLLWSYNTAR----------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-cceeeeeeeeee----------------ecCC-CccceEEEEEcCCCceeeccccCceEEE
Confidence 9 667777765 44 1111 2678999999999999999999997754
No 191
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.8e-16 Score=143.41 Aligned_cols=283 Identities=18% Similarity=0.279 Sum_probs=189.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-ccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCce--
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNY-- 300 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~-- 300 (526)
.+.-++|++.-..+|++..|-.|++|+-.. +....++ .....|+|++|-|. +..|+.|+.. -|.||......+.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 567889998777788999999999999876 4444444 24567999999994 4567777775 5999986542211
Q ss_pred ---------eeeEecccCccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc
Q 009763 301 ---------DCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (526)
Q Consensus 301 ---------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 370 (526)
..+....+| .+|++|.|++||..+++++. |..|.|||..++..+.... .....++-+.|+|||.
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-----~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-----KGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-----cCCCceeeEEEcCCCC
Confidence 112222345 68999999999999999886 6789999999987765442 1225788999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCcc----c-----eE------
Q 009763 371 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN----F-----RS------ 435 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~----~-----~~------ 435 (526)
+|++++-|+..++|...............+.|...+|+|.|.+|+-.....-++|.+..... . +.
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 99999999999999654433222333345589999999999988776666544554422110 0 00
Q ss_pred Eec-----C--CCCCCeeEEEEcCCCCEEEEEeCC----------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 436 FES-----S--DSETPTNSVDFDHSGSYLAVASAD----------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 436 ~~~-----~--~~~~~i~~i~~s~~~~~l~~~~~d----------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
+.. . .-.+.+.+++|+|.|.||++.-.. +.+|+... .......+-+.........++|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~---sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK---SPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc---cCceEEEecccccCCCCceEEeee
Confidence 000 0 014578899999999999987544 33444311 111111111221222345566665
Q ss_pred ---CCCEEEEEeCCCcEEEeeCC
Q 009763 499 ---DAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 499 ---~~~~l~s~~~dg~v~iw~l~ 518 (526)
++.+|..+-..|.+.-|.+.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 67788888888998888764
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3e-16 Score=157.42 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=211.5
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC-CCcee
Q 009763 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYD 301 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~----~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~ 301 (526)
.++.+++.|.+.+..- +..+.+|+...+.... .-..|...+++.+++|+++++++|..||.|.+|.--. ...-.
T Consensus 164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 4677788888776665 4468888877644111 1124777799999999999999999999999996433 22223
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
....+.=|...|++++|+++|.+|++||..|-+.+|.+.+++ .++- +.-.++|..+.++||+.+.+....|+.|
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL----PRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL----PRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccc----cccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 445566788999999999999999999999999999999998 3332 1334689999999999999999999999
Q ss_pred EEEECCCCceeeEecC-----------CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC---------
Q 009763 382 KIWDVKSQANVAKFDG-----------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD--------- 440 (526)
Q Consensus 382 ~iwd~~~~~~~~~~~~-----------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~--------- 440 (526)
.+....+.....++.+ ..+-.+.++++|.-+.++-.+..+ |.+||+.+.+.+..+....
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 9998766554443332 234567889999655666666666 9999998877665544321
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC--------C----eEEEEEecccCcceeeeeecCCCCCcceEEEEE-cCCC-CEEEEE
Q 009763 441 SETPTNSVDFDHSGSYLAVASA--------D----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF-GPDA-KYIAVG 506 (526)
Q Consensus 441 ~~~~i~~i~~s~~~~~l~~~~~--------d----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~-~~l~s~ 506 (526)
....++.++.+-.|.++++.-. + +++|.+....++|......... |...+...++ ++.. ...+++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEe
Confidence 1235677888888999998632 1 8999998888888888777654 3444444444 3333 378999
Q ss_pred eCCCcEEEeeCCCCC
Q 009763 507 SMDRNLRVFGLPGND 521 (526)
Q Consensus 507 ~~dg~v~iw~l~~~~ 521 (526)
+.||.++||-+.+.+
T Consensus 476 ~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDS 490 (792)
T ss_pred ccCCeEEEEEEeccc
Confidence 999999999995543
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.3e-17 Score=149.26 Aligned_cols=255 Identities=13% Similarity=0.147 Sum_probs=182.6
Q ss_pred EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC---CceeeeEecc-cCccceEEEEEecCCCEEEEEECCCeE
Q 009763 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED---GNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTW 334 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i 334 (526)
+.+.+|.+.|+++.|+.++++|++|+.|..+++|++... ...+++.... .|.+.|.|++|...+.++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345689999999999999999999999999999997642 1113333333 466899999999888999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc-eee--EecCCCCCeEEEEECCC-
Q 009763 335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVA--KFDGHVGAVTAISFSEN- 410 (526)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~--~~~~~~~~i~~l~~s~~- 410 (526)
...|+++.+.+..+... ...+.|+.+..+|-.+.|++.+.++.|.+||.+... ... ...........+.|+|.
T Consensus 130 I~HDiEt~qsi~V~~~~---~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANEN---NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeecccceeeeeeccc---CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999998888633 334589999999999999999999999999998764 222 22234456788999996
Q ss_pred CCEEEEEeCCc-EEEEEcCCCccc-eEE---ecCC-CCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeee
Q 009763 411 GYYLATAAHDG-VKLWDLRKLKNF-RSF---ESSD-SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482 (526)
Q Consensus 411 ~~~l~~~~~d~-i~iwd~~~~~~~-~~~---~~~~-~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~ 482 (526)
..+|++.+..+ +.+||.++.... ... .... .......+.|+|+|..|.+--.. -.+|++-. ..-.+..+
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S---~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS---QRCFVLKS 283 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec---ccceeEec
Confidence 45666666655 999999875431 111 1111 12234678999999888765444 44555521 11122222
Q ss_pred c----CCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 483 P----DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 483 ~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
. +......+.+++|..|- -+++|+.+=.|++|.++..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 2 11123356778887554 4999999999999999754
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=2.8e-16 Score=162.17 Aligned_cols=269 Identities=19% Similarity=0.248 Sum_probs=188.9
Q ss_pred EeCCCCcEEEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCC----CceeeeEecccCccceEEEEEecCCCE
Q 009763 250 FDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSED----GNYDCKHTLKDHTAEVQAVTVHATNKY 324 (526)
Q Consensus 250 wd~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~~p~~~~ 324 (526)
|+.. |..+..+..|...|..++.++. +.+|++||.||+|++|+.... +..+...++....+.+.++...+.++.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 6654 7888999999999999998874 589999999999999997542 234455555556778999999999999
Q ss_pred EEEEECCCeEEEEeCCCCe--EEE--EeecCCCCCCCCCee-EEEEcc-CCc-EEEEEeCCCcEEEEECCCCceeeEec-
Q 009763 325 FVTASLDNTWCFYDLSSGI--CLT--QVSDAGTDGRPEGYT-SAAFHP-DGL-ILGTGTSEALVKIWDVKSQANVAKFD- 396 (526)
Q Consensus 325 l~s~s~dg~i~iwd~~~~~--~~~--~~~~~~~~~~~~~v~-~~~~~~-~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~- 396 (526)
++.++.||.|.+.+++... ... ....... ...+.+. .-+|.. .+. .++.+...+.|..||+++......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccc-cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 9999999999999987621 111 1111111 1122233 333333 334 78888889999999999887665554
Q ss_pred -CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC---CEEEEEeC-C---eEEE
Q 009763 397 -GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG---SYLAVASA-D---IRVY 467 (526)
Q Consensus 397 -~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~---~~l~~~~~-d---i~v~ 467 (526)
...+.|++++.+|.+.|++.|+..| +.+||+|-..++..+.... ..++..+..+|-. .+.++++. . +.+|
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 3457899999999999999999999 9999999988888877654 4788888877643 46665554 2 9999
Q ss_pred EEecccCcceeeee-----e----cCC----CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 468 QVASVKADWNCIKT-----F----PDL----SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 468 ~~~~~~~~~~~~~~-----~----~~~----~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
++..+......... + ... .+.-......+...+.++.+|+.|+.|+.||.....
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 98654322111111 0 000 011122233444456789999999999999987654
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=158.16 Aligned_cols=238 Identities=13% Similarity=0.205 Sum_probs=180.2
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
+-.++|++.|.|++|+.+|+.+|+|+.|+.|.+|+.+-... ..+ .|...|.|+.|+|-...|++++.. ..-+|....
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q 123 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ 123 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence 34688999999999999999999999999999998653222 222 499999999999998899998864 477897655
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-----cE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-----LI 371 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~ 371 (526)
. .+... .....|.+++|..||++++.|-.||+|.+-+-.....+..-. +.+.+++|.+++|+|.. .+
T Consensus 124 K----~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R---pgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 124 K----SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER---PGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred h----hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC---CCCCCCCceEEEecCCCCCCccce
Confidence 3 22221 234578899999999999999999999998754443333332 33567899999999943 57
Q ss_pred EEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEE
Q 009763 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 450 (526)
+++.....++.+|.+. |+.+..-..-.-...|+++.+||.++..|+.++ +.+|- |.+-.+.++... ..+|+.++.
T Consensus 196 ~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~--D~WIWtV~~ 271 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ--DSWIWTVQA 271 (1081)
T ss_pred EEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc--ceeEEEEEE
Confidence 7777777788888764 444433222333567899999999999999988 88885 455555554443 679999999
Q ss_pred cCCCCEEEEEeCC--eEEEEE
Q 009763 451 DHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 451 s~~~~~l~~~~~d--i~v~~~ 469 (526)
.|++++++.|+.| +..|++
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCceEEEEEccCeeehhhh
Confidence 9999999999999 555654
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=1.4e-16 Score=159.52 Aligned_cols=246 Identities=17% Similarity=0.188 Sum_probs=176.3
Q ss_pred CCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcE--EE----EecccccceeEEEEecCC--CEEEEEeCCCcEEEE
Q 009763 222 SKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQI--VT----TLSGHSKKVTSVKFVTEG--DLFLTGSADKTVRVW 292 (526)
Q Consensus 222 ~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~--~~----~~~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iw 292 (526)
-...|+|+.|+| +.++++.|..+|.|.+||+..+.. .. ....|..+++.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 467889999999999999987654 22 233689999999997643 449999999999999
Q ss_pred eCCCCCceeeeEec---c------cCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEE--Eee-cCCCCCCCCC
Q 009763 293 QGSEDGNYDCKHTL---K------DHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLT--QVS-DAGTDGRPEG 359 (526)
Q Consensus 293 d~~~~~~~~~~~~~---~------~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-~~~~~~~~~~ 359 (526)
+++.-........+ . .-...++++.|.+. .+.|+.|+.+|.|.--+......-. .+. ......|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 87543211111111 1 12246889999884 4678999999998873332221111 111 1124467889
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECC-CCceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCcc--ce
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN--FR 434 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~--~~ 434 (526)
|+++.++|=+..++..+.|-+++||... ...++..+..+...+++++|||.. ..|+++..+| +.+||+..... +.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999965444444449999999988 667787888787889999999964 5666777778 99999976443 33
Q ss_pred EEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 435 SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
..... ....+.+.|+++|+.|++|... +.+|++
T Consensus 481 s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 481 SQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 33332 4567788899999999999988 577766
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=2.3e-16 Score=138.65 Aligned_cols=256 Identities=17% Similarity=0.260 Sum_probs=182.9
Q ss_pred cEEEEecccccceeEEEEec--C-CCEEEEEeC----CCcEEEEeCCCCC-ceeeeEecccCccceEEEEEecCCC----
Q 009763 256 QIVTTLSGHSKKVTSVKFVT--E-GDLFLTGSA----DKTVRVWQGSEDG-NYDCKHTLKDHTAEVQAVTVHATNK---- 323 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~--~-~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~---- 323 (526)
+.+..+..+ -.+.++.|+. + +.+|+.|+. .+.|.|-.+.... ......+ ..|.-+++.+.|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCc
Confidence 334444433 3477788873 2 336888874 4667776655432 1222222 36899999999999763
Q ss_pred -EEEEEECCCeEEEEeCCCC--eE--EEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCc---eeeE
Q 009763 324 -YFVTASLDNTWCFYDLSSG--IC--LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA---NVAK 394 (526)
Q Consensus 324 -~l~s~s~dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~---~~~~ 394 (526)
+|++++ ..+++|.+... .. ...+.......+..+++++.|+. +.+++.+++-|-+..|||+.++. ....
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 455543 48999998742 21 11222222345667999999998 88999999999999999999863 3556
Q ss_pred ecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCC-CCCeeEEEEcCCC-CEEEEEeCC---eEEE
Q 009763 395 FDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDS-ETPTNSVDFDHSG-SYLAVASAD---IRVY 467 (526)
Q Consensus 395 ~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~i~~i~~s~~~-~~l~~~~~d---i~v~ 467 (526)
+-.|...|..++|...+ ..|++.+.|| |++||+|....-..+..... ..+...++|++.. +|+++-..| +.|.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 77899999999999864 5778888888 99999998876555544433 5678899998755 566654444 8888
Q ss_pred EEecccCcceeeeeecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEeeCCCC
Q 009763 468 QVASVKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~l~~~ 520 (526)
|+. .....+..+..| .+.|++++|.|. ...|+++|+|..+.+||++.-
T Consensus 272 DiR---~P~tpva~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 272 DIR---VPCTPVARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred Eec---CCCcceehhhcC--cccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 874 345566777776 889999999994 568999999999999999764
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=3.5e-17 Score=154.86 Aligned_cols=207 Identities=15% Similarity=0.253 Sum_probs=167.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceE
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (526)
.+.++.++.||.+.+.+- .++....+..|.+.|.+-.|+|+|.-|++++.||.|++|.-.. -...++.....+|.
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----MLRSTVVQNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hHHHHHhhcCceeE
Confidence 457888889999999874 4788888999999999999999999999999999999998654 23344455678999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeE
Q 009763 315 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK 394 (526)
Q Consensus 315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 394 (526)
|++|.|+.+.++.+. .+.+.|=.+.....+.... .|.+-|.++.|++..+++++|++|-..++||- .|..+..
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-----AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~ 222 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-----AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFT 222 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccccceeEEe-----ccCcEEEEeecCccccceeecCCceeEEeecc-cCccccc
Confidence 999999887766553 3567776666655555554 67789999999999999999999999999996 4667777
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEE
Q 009763 395 FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVY 467 (526)
Q Consensus 395 ~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~ 467 (526)
-..|..+|++++|+|+ ..++.++.+.++ +... ..+.|..++|++||..+++|+..+.++
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYNTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeeeeee------------ecCC-CccceEEEEEcCCCceeeccccCceEE
Confidence 7789999999999999 777777766565 2221 256899999999999999998884433
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=2.4e-15 Score=136.75 Aligned_cols=235 Identities=18% Similarity=0.290 Sum_probs=174.8
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC--eEEEEeCCCC
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--TWCFYDLSSG 342 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~i~iwd~~~~ 342 (526)
...+..+.|..+...|..|+.|| .++|+...-+ ++... ......|.-+-|+ ..+++..+.+. .++++++..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~--k~~~~-~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE--KCFSK-DTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH--Hhhcc-cCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 34567777988888899999988 6788766532 11111 1122345555554 55666666543 4999999988
Q ss_pred eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC---CCCCeEEEEECCCCCEEEEEeC
Q 009763 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~l~~~~~ 419 (526)
..+..+.- +..|.++.++.+ .|++.-. ..|+|||+++.+.+.++.. +...+..+++++++.+++.-+.
T Consensus 79 ~~ICe~~f------pt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 79 TTICEIFF------PTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred ceEEEEec------CCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 87777642 357888888754 4444444 3499999999999888854 3344666666666678876543
Q ss_pred C--c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEE
Q 009763 420 D--G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATC 493 (526)
Q Consensus 420 d--~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 493 (526)
- | |.+||..+.+.+..+..| .+++.+++|+++|.+||++++. ||||.+ .++..+..|....-...|.+
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH--~~~lAalafs~~G~llATASeKGTVIRVf~v----~~G~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAH--KGPLAALAFSPDGTLLATASEKGTVIRVFSV----PEGQKLYEFRRGTYPVSIYS 223 (391)
T ss_pred CCCceEEEEEcccceeeeEEEec--CCceeEEEECCCCCEEEEeccCceEEEEEEc----CCccEeeeeeCCceeeEEEE
Confidence 3 4 999999999999999877 7899999999999999999998 999998 55666666665433567899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 494 VKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 494 ~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
++|++++++|++.+..++|++|.++..
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEeccc
Confidence 999999999999999999999999754
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.3e-17 Score=151.42 Aligned_cols=198 Identities=22% Similarity=0.281 Sum_probs=151.6
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec
Q 009763 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (526)
.+++|+.+|..+++|+.||++++|++.+...+.....|.+.|.++.|+|||++|++.+.| ..+||+..++. ++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~---~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA---ALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc---hhhhc
Confidence 789999999999999999999999999888888888899999999999999999999999 89999998872 33322
Q ss_pred c--cCccceEEEEEecCC---CEE--EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 307 K--DHTAEVQAVTVHATN---KYF--VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 307 ~--~h~~~v~~l~~~p~~---~~l--~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
. ........+.|+.++ .++ +....-+.|..||+.....-..+...........+++++++++|++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2 233456667777666 333 333345667776654332211111111112335799999999999999999999
Q ss_pred cEEEEECCCCceeeEe-cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcC
Q 009763 380 LVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 428 (526)
.|.|++..+.+.++.. +.|...|+.+.|+|+.+++++.+.+. ..+.-+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999888776665 45889999999999999999887775 6666543
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.3e-14 Score=129.57 Aligned_cols=281 Identities=16% Similarity=0.281 Sum_probs=192.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEE-EEeCC------CcEEEEeCCCC
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSAD------KTVRVWQGSED 297 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~d------g~i~iwd~~~~ 297 (526)
...+++|+.|...+++|..+| .++|+.+--+.......+.+.+.-+...-..++|+ +||.+ +.|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 455699999999999988665 89999875333222222222222111111334433 34333 47999993332
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCC-CCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE-E
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT-G 375 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g 375 (526)
.++.++. ...+|.++.+.+ ..+++. ..+.|.+|... +.+.+..+... ..+..+.+++-+.+..+|+. |
T Consensus 86 ---~~i~el~-f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~---~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 86 ---RCIIELS-FNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETR---SNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred ---cEEEEEE-eccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeecc---cCCCceEeecCCCCceEEEcCC
Confidence 6666664 678899999974 345544 45789999988 45555555422 22345555555555556665 4
Q ss_pred eCCCcEEEEECCCCce--eeEecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 376 TSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
..-|.|+|-|+...+. ...+..|.+.|.|++.+-+|..+|+++..| |+|||..++..+..+........+.+++|+
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 5569999999987655 467788999999999999999999999998 999999999999999877667889999999
Q ss_pred CCCCEEEEEeCC--eEEEEEecccCcce----------e----------eeeecCCCCCcceEEEEEcCCCCEEEEEeCC
Q 009763 452 HSGSYLAVASAD--IRVYQVASVKADWN----------C----------IKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 509 (526)
Q Consensus 452 ~~~~~l~~~~~d--i~v~~~~~~~~~~~----------~----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 509 (526)
|++.+|+++++. ++||.+........ . ...+.. ..+...-++|..+.+.++..+.|
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~D 313 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICAD 313 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeC
Confidence 999999999988 88888754221111 0 011111 13455667888776677777789
Q ss_pred CcEEEeeCC
Q 009763 510 RNLRVFGLP 518 (526)
Q Consensus 510 g~v~iw~l~ 518 (526)
|..+=+.+.
T Consensus 314 gsy~k~~f~ 322 (346)
T KOG2111|consen 314 GSYYKFKFD 322 (346)
T ss_pred CcEEEEEec
Confidence 987665553
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=5.5e-16 Score=160.00 Aligned_cols=294 Identities=15% Similarity=0.162 Sum_probs=198.9
Q ss_pred cCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCC-------cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 220 KTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
..|.+.|..++.++.. .++++|+.||+|++||.... +...++......+.++.+.+.++.+|.++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 3467778888887654 89999999999999997541 223344445678999999999999999999999999
Q ss_pred EeCCCC--Cc--eeeeEecccCc-cceEEE-EEec-CCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEE
Q 009763 292 WQGSED--GN--YDCKHTLKDHT-AEVQAV-TVHA-TNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (526)
Q Consensus 292 wd~~~~--~~--~~~~~~~~~h~-~~v~~l-~~~p-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (526)
.+++.. .. ..+.+....+. +.+..+ +|.. .+. .++.+...+.|..||++........+.. ...+.|+++
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~---~~hG~vTSi 1201 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ---LRHGLVTSI 1201 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC---ccccceeEE
Confidence 998762 11 12222222222 233333 3322 233 6888888899999999987766665532 334689999
Q ss_pred EEccCCcEEEEEeCCCcEEEEECCCCceeeEecC-CCCCeEEEEECCC---CCEEEEEeC--Cc-EEEEEcCCCccceEE
Q 009763 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSEN---GYYLATAAH--DG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 364 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~---~~~l~~~~~--d~-i~iwd~~~~~~~~~~ 436 (526)
+.+|.++++++|+..|.+.+||+|-+.++..+.. +..+|..+..+|- ....++++. .+ |.+|++.++.+...+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 9999999999999999999999999988887752 4467777777663 355555555 34 999999998766655
Q ss_pred ecCCC-----------------CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCc----------c-----------
Q 009763 437 ESSDS-----------------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD----------W----------- 476 (526)
Q Consensus 437 ~~~~~-----------------~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~----------~----------- 476 (526)
..... ........+...+.++.+|+.| |+.||....... .
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccc
Confidence 54310 1112233344456777888887 888886422111 0
Q ss_pred ----ee-------------------eee------ecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEee
Q 009763 477 ----NC-------------------IKT------FPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 477 ----~~-------------------~~~------~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~ 516 (526)
.. ... .....|...|+++++-.. ..+|++++.||.|+||.
T Consensus 1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 000 001124567888876553 45899999999999994
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2e-15 Score=134.98 Aligned_cols=269 Identities=16% Similarity=0.233 Sum_probs=190.6
Q ss_pred CeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCCceee
Q 009763 225 GIVSLDIHYSKDVIAT-GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t-~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.|.-+.|..+.-++++ ...++.|.+|++...+-...+.....++.+++|+|||+. |.+..-|-.|.||.+.+. .
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~---~- 125 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ---K- 125 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc---e-
Confidence 4677888887765554 456889999999988888888888889999999999964 566667899999999884 2
Q ss_pred eEecccCccceEEEEEecCCCEEEEEECC------------------------------------CeEEEEeCCCCeEEE
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTASLD------------------------------------NTWCFYDLSSGICLT 346 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------------------------------------g~i~iwd~~~~~~~~ 346 (526)
...+......+..++|+|+|++.+.+++- ..+.+||---.-.+.
T Consensus 126 ~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 126 GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 22233334556889999999987766542 223344422111111
Q ss_pred EeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe-------------------------------
Q 009763 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF------------------------------- 395 (526)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~------------------------------- 395 (526)
.+. ..-++..+.|+|.+++|++|+.|+.+++.+--+.+....+
T Consensus 206 aYe------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 206 AYE------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred eee------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 111 1246889999999999999999999887653222111100
Q ss_pred -----------------------------c------CCCCCeEEEEECCCCCEEEEEeCC--c-EEEEEcCCCccceEEe
Q 009763 396 -----------------------------D------GHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 396 -----------------------------~------~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~~~~~~~~~ 437 (526)
+ .....+..++|++|..++++-.+. + +.+||+++.+....+.
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi 359 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI 359 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh
Confidence 0 112346779999999999998776 3 9999999887766554
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 511 (526)
. ..+|....|+|....|+.+....++|-+. ..+......+.. .-.|..+.|..+|..++..+.|..
T Consensus 360 Q---k~piraf~WdP~~prL~vctg~srLY~W~---psg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 360 Q---KHPIRAFEWDPGRPRLVVCTGKSRLYFWA---PSGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred h---ccceeEEEeCCCCceEEEEcCCceEEEEc---CCCceEEecCCC--CceeeeEEecCCCcEEEEEcCCce
Confidence 4 57899999999998888887776666552 233333333332 357899999999999999998864
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.7e-16 Score=156.71 Aligned_cols=234 Identities=16% Similarity=0.150 Sum_probs=160.9
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCCceeeeEecccCccceEEEEEec
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 320 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p 320 (526)
+..|.+||..... ...+..|...+.+..|+|||+.|+.++.+ ..|++||+.++. ...+..+.+| ...++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCceeECC
Confidence 4689999987544 55667788889999999999999887654 369999997742 2334444444 34689999
Q ss_pred CCCEEEEEE-CCCeEEE--EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCCCcEEEEECCCC-ceeeEe
Q 009763 321 TNKYFVTAS-LDNTWCF--YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQ-ANVAKF 395 (526)
Q Consensus 321 ~~~~l~s~s-~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~-~~~~~~ 395 (526)
+|+.|+.++ .+|.+.| ||+.++.. ..+. .+...+....|+|||..|+.+ ..+|...||++... .....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 999888764 6776555 56666653 3332 233457789999999876654 45788888876532 222223
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEeccc
Q 009763 396 DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK 473 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~ 473 (526)
.+.+ .+..|+|+|++|+..+.+++.+||+.+++....... .....+.|+|+|++|++++.+ ..+|.+..
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~-- 402 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVS-- 402 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEE--
Confidence 3333 457899999999988877788899988765422211 123567899999999998876 66665422
Q ss_pred CcceeeeeecCCCCCcceEEEEEcCC
Q 009763 474 ADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
.++.....+..+ .+.+...+|+|-
T Consensus 403 ~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCC--CCCCCCcccCCC
Confidence 234455566544 567888899874
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.8e-15 Score=144.69 Aligned_cols=283 Identities=14% Similarity=0.212 Sum_probs=202.3
Q ss_pred CCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 222 SKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~-l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
+...-+.|..+|||+| +|+|...-.|++||+.+..+...-.-....|.-.-.+.|-..++.-..|.+|-+-.--.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G---- 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG---- 125 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC----
Confidence 3456688999999996 56778899999999976443322221223344444455555566667777777653221
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
....+. -...-..++++.-.--|++++....|+-++++.|..+..+.. ....++++.+++-..+|++|+.+|.
T Consensus 126 -~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 126 -RHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred -eeeeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-----ccccceeeeecCccceEEecccCce
Confidence 111111 112334566664344455556667899999999998887762 2368999999999999999999999
Q ss_pred EEEEECCCCceeeEecC------CCC-----CeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEE
Q 009763 381 VKIWDVKSQANVAKFDG------HVG-----AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~------~~~-----~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 448 (526)
|.+||.++...+..+.. |.+ .|+++.|+.+|-.+++|+..| |.|||+|..+++..- .|....+|..+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l 277 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKL 277 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeee
Confidence 99999998877666532 222 499999999999999999999 999999998886543 44557889999
Q ss_pred EEcCC--CCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCC
Q 009763 449 DFDHS--GSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 523 (526)
Q Consensus 449 ~~s~~--~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~ 523 (526)
.|.+. +..+++.... ++||+- ..+........ ...++.+|+-|++.+++++..++.+..|=++.-.+.
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~----~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDE----CTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred cccccCCCceEEecchHHhhhccc----ccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCCC
Confidence 99776 4556666555 999996 34444444433 456899999999999999999999999888765543
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.8e-16 Score=150.57 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=162.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cccccceeEEEEec--CCCEEEEEeCCCcEEEEeC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~ 294 (526)
...+|.+-|.|+.|+.+|.+|++|+.|-.+.|||....++++.+ .||...|.++.|.| +++++++|..|..|++||+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 46789999999999999999999999999999999888887766 48999999999998 5668999999999999998
Q ss_pred CCC-------CceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecC-----CCCCCCCCee
Q 009763 295 SED-------GNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDA-----GTDGRPEGYT 361 (526)
Q Consensus 295 ~~~-------~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~ 361 (526)
... +.......+..|...|..|+..|++ +.|.+++.||+|+-+|++....-..-... .....--...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 742 1124555667899999999999988 78999999999999999864211100000 0001113567
Q ss_pred EEEEcc-CCcEEEEEeCCCcEEEEECCCC--------c----------eeeEec-CCC-----------CCeEEEEECCC
Q 009763 362 SAAFHP-DGLILGTGTSEALVKIWDVKSQ--------A----------NVAKFD-GHV-----------GAVTAISFSEN 410 (526)
Q Consensus 362 ~~~~~~-~~~~l~~g~~dg~i~iwd~~~~--------~----------~~~~~~-~~~-----------~~i~~l~~s~~ 410 (526)
|+.++| +..+|++|+.|-..++||.|.. . ++..|. +|. ..++.+.|+||
T Consensus 205 ~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN 284 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN 284 (758)
T ss_pred eeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCC
Confidence 999999 6789999999999999995321 1 122221 111 12567899999
Q ss_pred CCEEEEEeCCc-EEEEEcCCCcc
Q 009763 411 GYYLATAAHDG-VKLWDLRKLKN 432 (526)
Q Consensus 411 ~~~l~~~~~d~-i~iwd~~~~~~ 432 (526)
|.-|++.-.+. |++||+...+.
T Consensus 285 GtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 285 GTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CcEEEEeeCCeEEEEEeecCCCC
Confidence 98777665544 99999976554
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=1.7e-15 Score=135.14 Aligned_cols=201 Identities=16% Similarity=0.192 Sum_probs=162.1
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC-CCC
Q 009763 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL-SSG 342 (526)
Q Consensus 264 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~-~~~ 342 (526)
-..+|+|.+|++|+..++++.....|.||.......++..+++..|...|++++|.|..+.|++++.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999998887668999999999999999999999999999999999999998 555
Q ss_pred eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCcee----eEecCCCCCeEEEEECCCCCEEEEEe
Q 009763 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV----AKFDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
....++. ...++...+++.|+|.++.|++|+....|.||-+.....- +.-+.+.+.|+++.|+||+-+|++|+
T Consensus 89 ~Wkptlv---LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 89 TWKPTLV---LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred eecccee---EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 4443333 1245578999999999999999999999999987654321 12234677899999999999999999
Q ss_pred CCc-EEEEEcC-----C-------------CccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 419 HDG-VKLWDLR-----K-------------LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 419 ~d~-i~iwd~~-----~-------------~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
.|+ +++|..- . +..+..+. ...+.+..+.|+|+|..|+-.+.| +.+-+.
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 998 8888531 1 11222232 236789999999999999998888 555554
No 208
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-15 Score=137.52 Aligned_cols=247 Identities=23% Similarity=0.393 Sum_probs=177.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEecccc------------cceeEEEEecCCC--EEEEE
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHS------------KKVTSVKFVTEGD--LFLTG 283 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~-----~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~ 283 (526)
.+-|.++.|...|++||||..+|.|.+|.-.... ....++.|. ..|+.+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999654322 334455553 4688999998665 57777
Q ss_pred eCCCcEEEEeCCCCCce--------------------------------eeeEec-ccCccceEEEEEecCCCEEEEEEC
Q 009763 284 SADKTVRVWQGSEDGNY--------------------------------DCKHTL-KDHTAEVQAVTVHATNKYFVTASL 330 (526)
Q Consensus 284 s~dg~i~iwd~~~~~~~--------------------------------~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~ 330 (526)
+.|.+|++|.+...+.. .+.+.+ ..|+--|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 88999999986542210 111222 3588889999999999888876 5
Q ss_pred CCeEEEEeCCCCeEEEEe---ecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCcee----eEe-------
Q 009763 331 DNTWCFYDLSSGICLTQV---SDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANV----AKF------- 395 (526)
Q Consensus 331 dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~----~~~------- 395 (526)
|=.|.+|+++-...-..+ ++........-|++..||| ..++++-.++.|.|++.|+|..... ..+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 678999998754332222 2211112234588999999 5678888889999999999854221 111
Q ss_pred -----cCCCCCeEEEEECCCCCEEEEEeCCcEEEEEc-CCCccceEEecCCC-------------CCCeeEEEEcCCCCE
Q 009763 396 -----DGHVGAVTAISFSENGYYLATAAHDGVKLWDL-RKLKNFRSFESSDS-------------ETPTNSVDFDHSGSY 456 (526)
Q Consensus 396 -----~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~-~~~~~~~~~~~~~~-------------~~~i~~i~~s~~~~~ 456 (526)
..--..|..+.|+++|+++++-..-.|++||+ ...+++.++..+.. -..-..++|+.++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 11224688899999999999987777999999 45667777665532 123356889999999
Q ss_pred EEEEeCC--eEEEEEe
Q 009763 457 LAVASAD--IRVYQVA 470 (526)
Q Consensus 457 l~~~~~d--i~v~~~~ 470 (526)
+++|+.+ .++|+.+
T Consensus 344 v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLA 359 (433)
T ss_pred EecccccceEEEecCC
Confidence 9999988 8899854
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.4e-16 Score=145.68 Aligned_cols=194 Identities=22% Similarity=0.349 Sum_probs=152.0
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEe
Q 009763 269 TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 348 (526)
Q Consensus 269 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 348 (526)
.+++|+.+|..|++|+.||++|||++... ..+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 67999999999999999999999998765 5566667899999999999999999999999 9999999999766665
Q ss_pred ecCCCCCCCCCeeEEEEccCC-----cEEEEEeCCCcEEEEECCCCce-----eeEecCCCCCeEEEEECCCCCEEEEEe
Q 009763 349 SDAGTDGRPEGYTSAAFHPDG-----LILGTGTSEALVKIWDVKSQAN-----VAKFDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
.. ...+..+..+.|+.|+ .+++....-+.|..||+...+. ..+.......|++++.+++|++++.|+
T Consensus 224 t~---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 224 TP---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred CC---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 42 2344567778888876 3344444456777777643322 111112335799999999999999999
Q ss_pred CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 419 ~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
.+| |.|++..+.+.++.++. .|...|+.+.|+|+.++++..+.+ ..|..+.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999 99999998888766554 346799999999999999987766 6676663
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=4.3e-15 Score=132.93 Aligned_cols=273 Identities=13% Similarity=0.219 Sum_probs=185.0
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCCceeeeEec
Q 009763 228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (526)
-++|||+|+++|+++.- .+.|-|..+-+..+.+. .-..|..+.|..|..+ |.....|+.|.+|++... +-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEe
Confidence 46799999999999855 78888877655544333 2456888999987765 555678899999999775 444555
Q ss_pred ccCccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC-------
Q 009763 307 KDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------- 378 (526)
Q Consensus 307 ~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------- 378 (526)
......+..++|+|+|+ .+.+...|-.|.+|.+.+.+....-.. ...+..++|+|||++.+..+.-
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP------KTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc------ccCceeEEECCCCceeeeeecccHHHHHH
Confidence 66778899999999995 556667799999999998766543321 2346788888888887766531
Q ss_pred -----------------------------CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcC
Q 009763 379 -----------------------------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 379 -----------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 428 (526)
+.+.+||.--.-.+..+. ..-.+..+.|+|.+++|++|+.|+ +++.+--
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhcee
Confidence 123334322111111221 224688899999999999999997 7764421
Q ss_pred CCccc------------------------------------------------------------eEEec----CCCCCC
Q 009763 429 KLKNF------------------------------------------------------------RSFES----SDSETP 444 (526)
Q Consensus 429 ~~~~~------------------------------------------------------------~~~~~----~~~~~~ 444 (526)
+.+.+ ..++. .+....
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 11100 00000 001235
Q ss_pred eeEEEEcCCCCEEEEEeCC----eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 445 TNSVDFDHSGSYLAVASAD----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~d----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+..++|++|..|+++-.++ +-+|++. ..+.-..+. ...+|....|+|....|+.+.....+++|...+
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq----~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQ----NLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEech----hhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 6779999999999998877 6666662 222222222 256899999999988888888788899998765
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.5e-16 Score=148.59 Aligned_cols=242 Identities=20% Similarity=0.336 Sum_probs=159.5
Q ss_pred EEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec-ccCccceEEEEEec--CCCEEEEEECCCeE
Q 009763 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHA--TNKYFVTASLDNTW 334 (526)
Q Consensus 258 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p--~~~~l~s~s~dg~i 334 (526)
...+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-.. +.+..+ .+|...|.++.|-| ++..+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4578899999999999999999999999999999998754 444444 48999999999988 55789999999999
Q ss_pred EEEeCCCCeEEEE-----eecCCCCCCCCCeeEEEEccCC-cEEEEEeCCCcEEEEECCCCceee----------EecCC
Q 009763 335 CFYDLSSGICLTQ-----VSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVA----------KFDGH 398 (526)
Q Consensus 335 ~iwd~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~----------~~~~~ 398 (526)
++||+...+.-.. ....-...|...|..++..|++ +.+.++++||+|+-||+|...... .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985221100 0000022566778889999987 899999999999999998742111 11112
Q ss_pred CCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCcc-ceEEecCCC--CCCeeEE-EEcCCCCEEEEEeCCeEEEEEecc
Q 009763 399 VGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN-FRSFESSDS--ETPTNSV-DFDHSGSYLAVASADIRVYQVASV 472 (526)
Q Consensus 399 ~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~--~~~i~~i-~~s~~~~~l~~~~~di~v~~~~~~ 472 (526)
--...|+.++|. .++|++|+.+- .++||.|.... ...-..... .....++ .|+|.+. ..
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn----------- 264 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KN----------- 264 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cC-----------
Confidence 235678999995 67889998887 99999654222 111100000 0011111 1122111 00
Q ss_pred cCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCCC
Q 009763 473 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPS 524 (526)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~~ 524 (526)
........ ...++-+.|+|+|.-|.+.-..-.|++|++..++.+.
T Consensus 265 -~~gn~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 265 -SQGNLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred -cccccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 00000000 1235667889988776665555678999988776543
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=2.6e-13 Score=132.47 Aligned_cols=277 Identities=15% Similarity=0.185 Sum_probs=175.6
Q ss_pred CCEE-EEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 235 KDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 235 ~~~l-~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
++++ ++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+. +.+.++.. ....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~-G~~~ 80 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG---KVVATIKV-GGNP 80 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE--SSEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEec-CCCc
Confidence 3444 45566899999999999999999865544455789999999999999999999999987 56666653 3456
Q ss_pred EEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCC--CCCCCeeEEEEccCCcEEEEE-eCCCcEEEEECCCC
Q 009763 314 QAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQ 389 (526)
Q Consensus 314 ~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~ 389 (526)
.+++++++|+++++++ .++.+.++|.++.+.+..+...... .....+..+..+|....++.. -..+.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 8899999999988776 5899999999999998887633211 133467788888877755554 44588888898766
Q ss_pred ceee-EecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCccceEEecCC--------------------------
Q 009763 390 ANVA-KFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSD-------------------------- 440 (526)
Q Consensus 390 ~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~-------------------------- 440 (526)
+.+. .............|+|++++++++.... |-++|..+++....+....
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 4332 2222345678899999999887765442 7788876654332211100
Q ss_pred --------------------------CCCCeeEEEEcCCCCEEEEE---eCC---eEEEEEecccCcceeeeeecCCCCC
Q 009763 441 --------------------------SETPTNSVDFDHSGSYLAVA---SAD---IRVYQVASVKADWNCIKTFPDLSGT 488 (526)
Q Consensus 441 --------------------------~~~~i~~i~~s~~~~~l~~~---~~d---i~v~~~~~~~~~~~~~~~~~~~~~~ 488 (526)
..+....+..+|+++++.+. +.+ +.|+|. .+......+.... .
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~----~tl~~~~~i~~~~-~ 315 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDK----KTLKVVKTITPGP-G 315 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEEC----CGTEEEE-HHHHH-T
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEEC----cCcceeEEEeccC-C
Confidence 00112456668999999998 444 888887 4445555553211 2
Q ss_pred cceEEEEEcCCCCEEEEEeCCC--cEEEeeCCCC
Q 009763 489 GKATCVKFGPDAKYIAVGSMDR--NLRVFGLPGN 520 (526)
Q Consensus 489 ~~v~~~~~s~~~~~l~s~~~dg--~v~iw~l~~~ 520 (526)
..+..+.|++||+++..+..++ .|.+||..+-
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 3489999999999877665544 6999998764
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.7e-16 Score=144.10 Aligned_cols=260 Identities=18% Similarity=0.257 Sum_probs=191.8
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCCe
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNT 333 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~ 333 (526)
.+...+..|.+.|+.|.|...|..|++|+.|..|.+||+.... ....-..+|...|..-.|-|. ...+++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 3455778899999999999999999999999999999998763 223333589888888888874 467999999999
Q ss_pred EEEEeCCCCeEEE-EeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEec---CCCC---CeEEE
Q 009763 334 WCFYDLSSGICLT-QVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFD---GHVG---AVTAI 405 (526)
Q Consensus 334 i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~l 405 (526)
+++=.+.....+. +.. ...|.++|..++.-| ...-|.+++.|+.+.-+|++.+.+...+. .+.. ....+
T Consensus 211 vr~s~i~~t~~~e~t~r---l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKR---LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred eeeeeeccccceeccee---cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 9998765433332 332 236778899999999 45778999999999999999876544432 2222 56788
Q ss_pred EECCC-CCEEEEEeCCc-EEEEEcCCCcc------ceEEecC----CCCCCeeEEEEcCCCCEEEEEeCCeEEEEEeccc
Q 009763 406 SFSEN-GYYLATAAHDG-VKLWDLRKLKN------FRSFESS----DSETPTNSVDFDHSGSYLAVASADIRVYQVASVK 473 (526)
Q Consensus 406 ~~s~~-~~~l~~~~~d~-i~iwd~~~~~~------~~~~~~~----~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~ 473 (526)
+..|- .+.+++++.+. +++||.+.... +..+..+ .....|++++|+.++.-|.++..|..||-+....
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 88884 55889999888 99999876332 1222211 2256799999998887777777774444443332
Q ss_pred Ccc----------eeeee-ecCCCCCcceEEEE-EcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 474 ADW----------NCIKT-FPDLSGTGKATCVK-FGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 474 ~~~----------~~~~~-~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
..+ ..+.. +++|.....|.++- |.|...|+++|++-|.|.||+=.++
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 222 23333 77887777788885 5789999999999999999997654
No 214
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.7e-15 Score=132.93 Aligned_cols=190 Identities=17% Similarity=0.288 Sum_probs=144.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC
Q 009763 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 355 (526)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 355 (526)
..++++...|.|++||..++ +.+..++++...++.+.|.. ....+.+|+.||+|++||++.......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 56888889999999999886 66777888888888999876 4678999999999999999988766665532111
Q ss_pred CCCCeeEEEEccCCcEEEEEeC----CCcEEEEECCCCce-eeEe-cCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEc
Q 009763 356 RPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQAN-VAKF-DGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDL 427 (526)
Q Consensus 356 ~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~-~~~~-~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~ 427 (526)
..+..|++....++++++|+. +-.|.+||+|..+. +..+ ..|...|+++.|+|+ .++|++|+.|| |.+||+
T Consensus 117 -~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 117 -GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred -CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 257788888888899999864 56899999998765 5444 569999999999994 68999999999 999999
Q ss_pred CCCccceE-EecCCCCCCeeEEEEcCCC--CEEEEEeCC-eEEEEEecc
Q 009763 428 RKLKNFRS-FESSDSETPTNSVDFDHSG--SYLAVASAD-IRVYQVASV 472 (526)
Q Consensus 428 ~~~~~~~~-~~~~~~~~~i~~i~~s~~~--~~l~~~~~d-i~v~~~~~~ 472 (526)
.....-.. .....+...|..+.|..++ +........ ..+|++...
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 76532111 1111235679999998877 533333333 999998543
No 215
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=5.8e-15 Score=129.86 Aligned_cols=227 Identities=17% Similarity=0.284 Sum_probs=165.7
Q ss_pred CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC-EEEEEECC-------CeEEEEeCCCCeEEE------Eeec
Q 009763 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLD-------NTWCFYDLSSGICLT------QVSD 350 (526)
Q Consensus 285 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~d-------g~i~iwd~~~~~~~~------~~~~ 350 (526)
.|+.|.+.++..++..-....|..|.+.|+.++-+|-.. .|+++..+ -.+.||.+....... .+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 378888888877655445556777889999999999665 45554432 247899886543221 1110
Q ss_pred CCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce-eeEec-----CCCCCeEEEEECC--CCCEEEEEeCCcE
Q 009763 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFD-----GHVGAVTAISFSE--NGYYLATAAHDGV 422 (526)
Q Consensus 351 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~--~~~~l~~~~~d~i 422 (526)
. ...+-+.+.|+.|.|++..+++.. |..|.+|++..+.. +..+. .+....++-+|+| +|+.+++.++..+
T Consensus 118 L-dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 118 L-DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred C-CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcE
Confidence 0 112335799999999999888876 78999999987755 33332 2445678889999 7888988887779
Q ss_pred EEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEE-EeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-
Q 009763 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV-ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP- 498 (526)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~-~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 498 (526)
..||+|+.+....+... |...+..+.|+|+.+++++ ++.| ++||+.. ....++..+.+| .-.|.++.|+|
T Consensus 196 ~~~D~RT~~~~~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~H--sHWvW~VRfn~~ 269 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGH--SHWVWAVRFNPE 269 (370)
T ss_pred EEEEccchhhhcchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCC--ceEEEEEEecCc
Confidence 99999998887776543 3667999999999876555 5555 9999984 344566677776 66899999999
Q ss_pred CCCEEEEEeCCCcEEEeeCCC
Q 009763 499 DAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 499 ~~~~l~s~~~dg~v~iw~l~~ 519 (526)
..+++.+||.|..|.+|-..+
T Consensus 270 hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cceEEEecCCCceeEEEeccc
Confidence 457888999999999997654
No 216
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.67 E-value=1.4e-12 Score=127.45 Aligned_cols=279 Identities=15% Similarity=0.269 Sum_probs=187.3
Q ss_pred EEEEeCC----CcEEEEeC--CCCcEE--EEecccccceeEEEEecCCCEEEEEeC----CCcEEEEeCCCC-CceeeeE
Q 009763 238 IATGGVD----TNAVLFDR--PSGQIV--TTLSGHSKKVTSVKFVTEGDLFLTGSA----DKTVRVWQGSED-GNYDCKH 304 (526)
Q Consensus 238 l~t~~~d----g~v~vwd~--~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~----dg~i~iwd~~~~-~~~~~~~ 304 (526)
+++|+.. +.|.+|++ .+++.. ..+. .......++++|++++|+++.. +|.|..|++... +.+..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 67888877 444432 2222 3345677999999999998876 578999998775 5555665
Q ss_pred ecccCccceEEEEEecCCCEEEEEEC-CCeEEEEeCCC-CeEEEE---eec--CC---CCCCCCCeeEEEEccCCcEEEE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSS-GICLTQ---VSD--AG---TDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~-~~~~~~---~~~--~~---~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
...........++++|++++++++.. +|.+.++++.. +..... +.. .+ .........++.|+|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 55544556678999999999999875 89999999987 333222 110 00 0112345788999999998887
Q ss_pred EeC-CCcEEEEECCCCc--e--eeEec-CCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcC--CCc--cceEEecCC--
Q 009763 375 GTS-EALVKIWDVKSQA--N--VAKFD-GHVGAVTAISFSENGYYLATAAHDG--VKLWDLR--KLK--NFRSFESSD-- 440 (526)
Q Consensus 375 g~~-dg~i~iwd~~~~~--~--~~~~~-~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~--~~~--~~~~~~~~~-- 440 (526)
... ...|.+|++.... . ...+. ........+.|+|+++++++..... |.+|++. ++. .+..+....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 643 3579999997654 2 12222 2345688999999999998887664 9999888 332 222332221
Q ss_pred --CCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe-CCCcEEE
Q 009763 441 --SETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLRV 514 (526)
Q Consensus 441 --~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~i 514 (526)
.......+.++|+|++|+++... |.+|+++........+..+... ......+.++|+|++|++++ .++.|.+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 12257889999999999998765 9999996554455555555432 34579999999999999887 5678999
Q ss_pred eeCCC
Q 009763 515 FGLPG 519 (526)
Q Consensus 515 w~l~~ 519 (526)
|+++.
T Consensus 319 f~~d~ 323 (345)
T PF10282_consen 319 FDIDP 323 (345)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 98854
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.5e-14 Score=128.75 Aligned_cols=236 Identities=20% Similarity=0.326 Sum_probs=162.4
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc-cCccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCe
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~ 343 (526)
..+..++|++.-..|+++..|-.|++||-.. .+...++ .....|+|++|-|.+. .|+.|+ .+-|.+|.....-
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss----t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC----CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccc
Confidence 3467889998777799999999999998765 2333333 2346799999999665 455554 4678999865321
Q ss_pred EEEEe----e-----cCCCCCCCCCeeEEEEccCCcEEEEEeC-CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCE
Q 009763 344 CLTQV----S-----DAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 344 ~~~~~----~-----~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (526)
..... . .....+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.++-+.|||+|.+
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 11110 0 0012244 68999999999999998765 568999999998766555445678999999999999
Q ss_pred EEEEeCCc-EEEEEcCC-CccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceee-----------
Q 009763 414 LATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI----------- 479 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~----------- 479 (526)
|++++-|+ .++|.... ....+.... .+.|...+|+|+|++|..+... -++|.+....+.....
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lg---sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILG---SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred EEEecccceeeeehhcccceecceecc---CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeee
Confidence 99999998 89996544 333333333 4589999999999988766655 7777764432221111
Q ss_pred eeecC---CC----CCcceEEEEEcCCCCEEEEEeCCC
Q 009763 480 KTFPD---LS----GTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 480 ~~~~~---~~----~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
..+.. .. -.+.+.+++|.|.|.+||+.-..+
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 11110 00 145788999999999999875443
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.2e-14 Score=146.59 Aligned_cols=214 Identities=16% Similarity=0.139 Sum_probs=148.8
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcE--EEEecccccceeEEEEecCCCEEEEEe-CCCcEEEE-
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVW- 292 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~d---g~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iw- 292 (526)
..|...+.+.+|+|+|+.|+..+.+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.+.||
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEE
Confidence 3456789999999999999887654 3699999988754 3334444 34689999999887764 68876666
Q ss_pred -eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCe-EEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 293 -QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 293 -d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
|+.++ ....+..+...+....|+|+|+.|+.++ .+|...+|+++... ....+. +.. ....|+|||
T Consensus 277 ~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~------~~~--~~~~~SpDG 344 (429)
T PRK01742 277 MGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG------GRG--YSAQISADG 344 (429)
T ss_pred EECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec------CCC--CCccCCCCC
Confidence 55443 2344555667788999999999777655 57888888764322 122221 111 356899999
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEc--CCCccceEEecCCCCCCee
Q 009763 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL--RKLKNFRSFESSDSETPTN 446 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~--~~~~~~~~~~~~~~~~~i~ 446 (526)
+.|+.++.++ +.+||+.+++........ ....+.|+|+|++|+.++.++ +.+|++ .+++....+..+ ...+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~ 419 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVK 419 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCC
Confidence 9998887755 666999888654332222 335678999999999988776 777765 346666666543 45677
Q ss_pred EEEEcCC
Q 009763 447 SVDFDHS 453 (526)
Q Consensus 447 ~i~~s~~ 453 (526)
..+|+|-
T Consensus 420 ~p~wsp~ 426 (429)
T PRK01742 420 FPAWSPY 426 (429)
T ss_pred CcccCCC
Confidence 8888874
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=2.1e-14 Score=136.42 Aligned_cols=220 Identities=14% Similarity=0.177 Sum_probs=145.9
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc-eeeeEecccCccceEEEEE-----ecCCCEEEEEECCCeEEEEeCCC
Q 009763 268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTV-----HATNKYFVTASLDNTWCFYDLSS 341 (526)
Q Consensus 268 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~-----~p~~~~l~s~s~dg~i~iwd~~~ 341 (526)
+....++-.|++|+..-. ..+.+|+...... ...+....-.....+|-+| .|.+--++.|-.-|.+.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 334444445666555433 3578887764221 0111111111122334444 34556688888889999998766
Q ss_pred CeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCC--------------C--------------cee
Q 009763 342 GICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS--------------Q--------------ANV 392 (526)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~--------------~--------------~~~ 392 (526)
......+... .......++|+.|-| +..+++++..+|.+++||..- + .++
T Consensus 205 ~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 205 FEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 3322222211 112336899999999 567788888999999997531 1 111
Q ss_pred eEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 393 AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
..+....+.|+.++|+|||++|++.+.|| ++|||+.+.+.+..++.. -+...|++|+|||+||++|++| +.||.+
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 12222345789999999999999999999 999999988776555443 4678999999999999999999 999998
Q ss_pred ecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 470 ASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
...+.+.. ++.|...|..++|.
T Consensus 362 ----~erRVVAR--GqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 ----EERRVVAR--GQGHKSWVSVVAFD 383 (636)
T ss_pred ----ccceEEEe--ccccccceeeEeec
Confidence 44555554 44458899999987
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.4e-13 Score=136.79 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=152.3
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC---CCcEEEEeCCCCCceeeeEecccCccceEEEEEecC
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (526)
..|.+||...... ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.++. .+.+..+.+ .+....|+|+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~~---~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPR---HNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCCC---CcCCeEECCC
Confidence 3688898875443 334446678999999999998886542 4579999987642 233333333 3456899999
Q ss_pred CCEEEEE-ECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC-Cc--EEEEECCCCceeeEe
Q 009763 322 NKYFVTA-SLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-AL--VKIWDVKSQANVAKF 395 (526)
Q Consensus 322 ~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g~--i~iwd~~~~~~~~~~ 395 (526)
|+.|+.. +.+| .|.+||+.++....... +...+....|+|||+.|+..+.+ |. |+++|+.++.. ..+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l 326 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTD------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRI 326 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccC------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEe
Confidence 9988765 4444 58999998876543321 12356789999999988766654 44 55557766543 333
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEE
Q 009763 396 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 468 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 468 (526)
...........|+|+|++|+..+.+ + |.+||+.++... .+.. ........|+|||++|+.++.+ ..++-
T Consensus 327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3334456678999999998876543 2 889999877543 3322 1223467899999999998876 22333
Q ss_pred EecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 469 VASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
++. +......+..+ .+.+...+|+|
T Consensus 403 ~~~---~G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 403 VST---DGRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEC---CCCCeEECccC--CCCcCCcccCC
Confidence 321 22333444443 55677888886
No 221
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.63 E-value=4.1e-16 Score=113.46 Aligned_cols=52 Identities=37% Similarity=0.677 Sum_probs=43.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|||++|.+||++| +|++|||..|++|+++ +++||+|+++|+.+||++.
T Consensus 5 f~CpIt~~lM~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 5 FLCPITGELMRDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GB-TTTSSB-SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cCCcCcCcHhhCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 57999999999999997 8999999999999999 6899999999999999987
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=5.8e-14 Score=128.71 Aligned_cols=264 Identities=17% Similarity=0.207 Sum_probs=187.7
Q ss_pred CCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCcEEEE------ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 224 PGIVSLDIHYSKD--VIATGGVDTNAVLFDRPSGQIVTT------LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 224 ~~I~~~~~s~~~~--~l~t~~~dg~v~vwd~~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
..|+.++|.-+++ .+...+.+..+..+.......... .....++|..+... ...|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 3566777765543 555554666777777665544333 33455667666653 3468888999999999987
Q ss_pred CCCc-eeeeEecccCccceEEEEEecCCC-EEEEEECC--CeEEEEeCCCCeEEEEeecCCCC----CCCCCeeEEEEcc
Q 009763 296 EDGN-YDCKHTLKDHTAEVQAVTVHATNK-YFVTASLD--NTWCFYDLSSGICLTQVSDAGTD----GRPEGYTSAAFHP 367 (526)
Q Consensus 296 ~~~~-~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~ 367 (526)
.+.. -.....+..+ ..+..+.-++... ++++|+.. ..+.+||++..+.+..-.....+ .-+-.++.+.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 4321 0222223322 4566666666555 45558888 88999999998766655432111 1124567888988
Q ss_pred C--CcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceE-EecCCCC
Q 009763 368 D--GLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS-FESSDSE 442 (526)
Q Consensus 368 ~--~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~-~~~~~~~ 442 (526)
. ...|++++.-+.|++||.+.+ +++..|.....+++++...|.|+++++|...+ +..||++.++.... +... .
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--t 290 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--T 290 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc--c
Confidence 7 889999999999999999876 67888888888999999999999999999888 99999999988776 4443 6
Q ss_pred CCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC
Q 009763 443 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
+.++++..+|.++++++++-| +|||++.. ...+..... ...++++.+.++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt----rkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT----RKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc----chhhhhhhh---hccccEEEecCC
Confidence 789999999999999999999 99999833 333333222 445677766543
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4e-13 Score=120.16 Aligned_cols=235 Identities=16% Similarity=0.261 Sum_probs=164.5
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCcc--ceEEEEEecCCCEEEEE-ECC------CeEEEE
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA--EVQAVTVHATNKYFVTA-SLD------NTWCFY 337 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~s~-s~d------g~i~iw 337 (526)
...+++|+.|...+++|..+| .+||+.+.- +.......+.+ .+.-+-| ..++++.. |.+ ..+.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 355699999998888888776 899987652 11111111222 2222222 34555443 332 469999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC-CCceeeEecCCC--CCeEEEEECCCCCEE
Q 009763 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-SQANVAKFDGHV--GAVTAISFSENGYYL 414 (526)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~l~~s~~~~~l 414 (526)
|-....++..+.. ..+|.++.+.++. |++. ..+.|++|... +.+.+..+.... ....+++-..+..+|
T Consensus 81 DD~k~~~i~el~f------~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 81 DDLKERCIIELSF------NSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ecccCcEEEEEEe------ccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 9777777777753 3689999998763 4443 36789999987 446666664322 234344333344556
Q ss_pred EEEeCC-c-EEEEEcCCCcc--ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCC
Q 009763 415 ATAAHD-G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSG 487 (526)
Q Consensus 415 ~~~~~d-~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~ 487 (526)
+.-+.. | |.|-|+...+. ...+..| ...|.+++++-+|..+|+++.. ||||+. .+...+..+.....
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt----~~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAH--DSDIACVALNLQGTLVATASTKGTLIRIFDT----EDGTLLQELRRGVD 225 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcc--cCceeEEEEcCCccEEEEeccCcEEEEEEEc----CCCcEeeeeecCCc
Confidence 655544 5 99999987665 3555555 7899999999999999999998 999997 66677777766556
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
...|.+++|||++.+|+++|+.|+|+||.+.....
T Consensus 226 ~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 226 RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 78899999999999999999999999999987543
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=4.9e-12 Score=123.72 Aligned_cols=263 Identities=13% Similarity=0.222 Sum_probs=173.5
Q ss_pred CeEEEEecCCCCEEEEEeC----CCcEEEEeCCCC--c--EEEEecccccceeEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 009763 225 GIVSLDIHYSKDVIATGGV----DTNAVLFDRPSG--Q--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGS 295 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~----dg~v~vwd~~~~--~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~ 295 (526)
.-..++++|++++|.+... +|.|..|++... . .+............++++|++++|+++. .+|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4567888999998888866 578999987653 3 2334433345567899999999988887 48999999998
Q ss_pred CCCceeeeEecc-----------cCccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCe--EEE--EeecCCCCCCCCC
Q 009763 296 EDGNYDCKHTLK-----------DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGI--CLT--QVSDAGTDGRPEG 359 (526)
Q Consensus 296 ~~~~~~~~~~~~-----------~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~--~~~--~~~~~~~~~~~~~ 359 (526)
..+......... .......++.++|+++++++... ...|.+|++.... ... .+.. .....
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~----~~G~G 193 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV----PPGSG 193 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC----STTSS
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc----ccCCC
Confidence 755433322111 12345789999999999888754 4579999997665 222 2221 22356
Q ss_pred eeEEEEccCCcEEEEEe-CCCcEEEEECC--CCc--eeeEecC----C--CCCeEEEEECCCCCEEEEEeCCc--EEEEE
Q 009763 360 YTSAAFHPDGLILGTGT-SEALVKIWDVK--SQA--NVAKFDG----H--VGAVTAISFSENGYYLATAAHDG--VKLWD 426 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~-~dg~i~iwd~~--~~~--~~~~~~~----~--~~~i~~l~~s~~~~~l~~~~~d~--i~iwd 426 (526)
...+.|+|+++++++.. .++.|.+|++. .+. .+..+.. . ......+.++|+|++|+++..+. |.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 88999999998876665 46789999987 332 2222211 1 12578899999999999987664 99999
Q ss_pred cCC--Cc--cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEE
Q 009763 427 LRK--LK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 427 ~~~--~~--~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
+.. +. .+..+... ....+.+.++|+|++|++++.+ +.+|+++.............. .....|+.|
T Consensus 274 ~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~---~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP---IPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE---SSSEEEEEE
T ss_pred EecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc---CCCCEEEeC
Confidence 942 22 23333332 4458999999999999999876 999988765544444443211 335567665
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=138.17 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=130.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEec----ccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCC----------
Q 009763 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSED---------- 297 (526)
Q Consensus 233 ~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~----~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~---------- 297 (526)
+.+--++.|-..|.|.++|....+..+.+. -....|+|+.|-| +...|+.+-.+|.+.+||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567788888999999876532211111 1246799999999 4456777788999999974211
Q ss_pred ----Cce-----------eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 298 ----GNY-----------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 298 ----~~~-----------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
..+ .++..+..-.+.|+.++|+|||++|++.+.||.++|||..+.+.+..+. ..-....|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-----SYFGGLLC 337 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-----SYFGGLLC 337 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-----hhccceEE
Confidence 011 1111112234578899999999999999999999999999877665554 23357999
Q ss_pred EEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEEC
Q 009763 363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (526)
++|+|||++|++|++|..|.||.+..++.+..-.+|.+.|+.++|.
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999999999999999999999999999999998
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=150.74 Aligned_cols=240 Identities=20% Similarity=0.351 Sum_probs=180.6
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
+.++.+.+|...|.|+.|...|.++++|+.|..|+||...+. .+.....||.+.|+.++.+.++..+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 345566799999999999999999999999999999998876 88999999999999999998888999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceee-----EecCCCCCeEEEEECCC
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA-----KFDGHVGAVTAISFSEN 410 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~l~~s~~ 410 (526)
+|.+..+..+..+. +|.+.|++++|+|-. +.+.||++++||.+-.-.+. .+. ...-+.++.|..+
T Consensus 258 vWrl~~~~pvsvLr-----ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLR-----GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILFENN 327 (1113)
T ss_pred EEecCCCchHHHHh-----ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-cccceeeeecccc
Confidence 99999999888876 788899999999954 67789999999998211111 111 2346777888888
Q ss_pred CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC-CCEEEEEeCC--eEEEEEecccCcceeeeeecCCC
Q 009763 411 GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS 486 (526)
Q Consensus 411 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~-~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~ 486 (526)
+.-+.+++.++ -..|.+.....-. ..+.-+.++.+ ..+.+++-.+ +.+|++ ..+.....+.+|
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~~--------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl----~~g~l~H~l~gh- 394 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWRS--------NLLIFVTRSSDLSSIVVTARNDHRLCVWNL----YTGQLLHNLMGH- 394 (1113)
T ss_pred ccccccccCCcccccchhhHhhhhc--------cceEEEeccccccccceeeeeeeEeeeeec----ccchhhhhhccc-
Confidence 99999999987 7777654321110 01111111111 2344455445 677776 445555555555
Q ss_pred CCcceEEEEEcC-CCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 487 GTGKATCVKFGP-DAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 487 ~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
...+..+.++| +.+...+++.||...|||+-.+.+
T Consensus 395 -sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 395 -SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred -ccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 66788899999 455667899999999999976643
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.7e-13 Score=133.86 Aligned_cols=232 Identities=15% Similarity=0.157 Sum_probs=154.4
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC---CCcEEEEeCCCCCceeeeEecccCccceEEEEEecC
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (526)
..|.++|.. +.....+..|...+.+..|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+....|+|+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcEECCC
Confidence 478888885 4445566678889999999999998887763 4689999997752 1233445667788999999
Q ss_pred CCEEE-EEECCCe--EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CC--cEEEEECCCCceeeEe
Q 009763 322 NKYFV-TASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKF 395 (526)
Q Consensus 322 ~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~ 395 (526)
|+.|+ +.+.++. |.+||+.++.... +. .+........|+|||+.|+..+. +| .|++||+..+... .+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~l 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT-----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RI 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEE-cc-----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Ee
Confidence 98765 5555554 7788998876533 32 22234567899999998877653 33 6888898765543 34
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC------eE
Q 009763 396 DGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IR 465 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~ 465 (526)
..+.+.+....|+|+|++|+..+.+ . |.+||+..+. ...+.. ...+....|+|+|+.|+..+.+ ..
T Consensus 330 t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 330 SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 3344556778999999999877643 2 8888975543 233322 2346778999999998876543 25
Q ss_pred EEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 466 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 466 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
+|.++...... ..+.. .+.+...+|+|
T Consensus 406 L~~~dl~g~~~---~~l~~---~~~~~~p~Wsp 432 (435)
T PRK05137 406 LYTVDLTGRNE---REVPT---PGDASDPAWSP 432 (435)
T ss_pred EEEEECCCCce---EEccC---CCCccCcccCC
Confidence 66664432222 22221 23455667765
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=5e-15 Score=138.25 Aligned_cols=228 Identities=16% Similarity=0.279 Sum_probs=182.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 346 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~ 346 (526)
.-..+.++.+|..|+.|+..|.|-.+|+.+. .....+. -...|.++.|..+.++|+++ ....++|||-. |..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEe
Confidence 3567889999999999999999999999886 3333332 34668899998777777766 55789999954 55556
Q ss_pred EeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEE
Q 009763 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 425 (526)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iw 425 (526)
.+... ..|..+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|..+| |.+|
T Consensus 205 Clk~~------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 205 CLKRH------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ehhhc------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 65432 4788999999999999999999999999999999999988888999999999888999999888 9999
Q ss_pred EcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEE
Q 009763 426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYI 503 (526)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 503 (526)
......++..+..| .++|.+++++++|.|+++++-| ++|||+.. ...+.++.. .-....+++|..| +|
T Consensus 279 SP~skePLvKiLcH--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~----~~ql~t~~t---p~~a~~ls~Sqkg-lL 348 (545)
T KOG1272|consen 279 SPNSKEPLVKILCH--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN----FYQLHTYRT---PHPASNLSLSQKG-LL 348 (545)
T ss_pred CCCCcchHHHHHhc--CCCcceEEECCCCcEEeecccccceeEeeecc----ccccceeec---CCCcccccccccc-ce
Confidence 99998888888777 7899999999999999999999 99999943 333333322 2356778888665 34
Q ss_pred EEEeCCCcEEEeeC
Q 009763 504 AVGSMDRNLRVFGL 517 (526)
Q Consensus 504 ~s~~~dg~v~iw~l 517 (526)
| .+....|.||.=
T Consensus 349 A-~~~G~~v~iw~d 361 (545)
T KOG1272|consen 349 A-LSYGDHVQIWKD 361 (545)
T ss_pred e-eecCCeeeeehh
Confidence 4 445567999953
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.6e-13 Score=135.29 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=151.5
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCCceeeeEecccCccceEEEEEecC
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (526)
..|.+||... .....+..+...+.+..|+|||+.|+.++.+ ..|.+||+.++.. . .+..+.+...+..|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~---~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-E---LVASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-E---EeccCCCCccCceECCC
Confidence 4688999864 4444555677789999999999998887643 4699999977521 2 22233444567899999
Q ss_pred CCEEE-EEECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CCc--EEEEECCCCceeeEe
Q 009763 322 NKYFV-TASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EAL--VKIWDVKSQANVAKF 395 (526)
Q Consensus 322 ~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~--i~iwd~~~~~~~~~~ 395 (526)
|+.++ +.+.+| .|++||+.++.... +. .+.......+|+|||+.|+.++. +|. |+++|+.+++.. .+
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~l 331 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RL 331 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee
Confidence 98775 445555 59999998886433 32 22233467899999998877653 444 667777666533 22
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEE
Q 009763 396 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 468 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 468 (526)
..+.......+|+|+|++|+..+.+ + |.+||+.+++.. .+.. ........|+|+|++++..+.+ ..+|.
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 2233345578999999998876543 2 899999877643 2222 1234567899999998877664 45665
Q ss_pred EecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 469 VASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
++... .....+..+ .+.+...+|+|
T Consensus 408 ~~~~g---~~~~~l~~~--~g~~~~p~wsp 432 (433)
T PRK04922 408 VSTDG---RVRQRLVSA--DGEVREPAWSP 432 (433)
T ss_pred EECCC---CceEEcccC--CCCCCCCccCC
Confidence 54322 222333222 34566677775
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.8e-12 Score=131.13 Aligned_cols=215 Identities=13% Similarity=0.130 Sum_probs=144.5
Q ss_pred CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEEC---CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEE
Q 009763 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (526)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (526)
..|.+||.... ....+..|...+.+..|+|+|+.|+..+. +..|.+||+.++.... +. .+...+...
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-----~~~g~~~~~ 251 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-----NFPGMTFAP 251 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-----cCCCcccCc
Confidence 37888887653 33445567788999999999998888764 4689999999886533 22 222356788
Q ss_pred EEccCCcEEE-EEeCCCc--EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEE
Q 009763 364 AFHPDGLILG-TGTSEAL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSF 436 (526)
Q Consensus 364 ~~~~~~~~l~-~g~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~ 436 (526)
.|+|||+.|+ +.+.+|. |++||+.++.. ..+..+........|+|+|+.|+..+.. + |++||+..+... .+
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~l 329 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RI 329 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Ee
Confidence 9999998765 4455554 77889887764 4455555566789999999988877643 2 888898765443 33
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC----
Q 009763 437 ESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD---- 509 (526)
Q Consensus 437 ~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---- 509 (526)
... ...+....|+|+|++|+....+ .+||.++...... ..+.. ...+....|+|||++|+..+.+
T Consensus 330 t~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 330 SFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ecC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---EeccC---CCCCCCCeECCCCCEEEEEEccCCCC
Confidence 322 3345678899999999887543 4455443322221 22211 2245678999999998775543
Q ss_pred --CcEEEeeCCCCC
Q 009763 510 --RNLRVFGLPGND 521 (526)
Q Consensus 510 --g~v~iw~l~~~~ 521 (526)
..|.++++.+..
T Consensus 402 ~~~~L~~~dl~g~~ 415 (435)
T PRK05137 402 GAPKLYTVDLTGRN 415 (435)
T ss_pred CcceEEEEECCCCc
Confidence 257777876543
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.1e-12 Score=132.12 Aligned_cols=215 Identities=11% Similarity=0.069 Sum_probs=144.5
Q ss_pred CCCCeEEEEecCCCCEEEEEeC---CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEE-eCCC--cEEEEeCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADK--TVRVWQGS 295 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~---dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg--~i~iwd~~ 295 (526)
+...+.+.+|+|+|+.|+..+. +..+.+|++.+++.... ....+.+..+.|+|||+.|+.. +.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 4567899999999998886542 45799999988754332 2223335578999999987754 4455 48889987
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECC-C--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
++ .. ..+..+...+....|+|+|+.|+.++.+ + .|.++|+.++... .+.. .........|+|||+.|
T Consensus 276 tg---~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-----~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 276 SG---QI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-----EGSQNQDADVSSDGKFM 345 (429)
T ss_pred CC---CE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-----CCCCccCEEECCCCCEE
Confidence 75 22 2333444567889999999988777654 3 4555677766543 3321 11234578899999988
Q ss_pred EEEeCC---CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc----EEEEEcCCCccceEEecCCCCCCe
Q 009763 373 GTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPT 445 (526)
Q Consensus 373 ~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i 445 (526)
+..+.+ ..|.+||+.+++.. .+... .......|+|||.+|+.++.++ +.++++. +.....+..+ ...+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~ 420 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQV 420 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC--CCCc
Confidence 776543 35888999887643 33321 2334678999999999888764 6777774 4444445443 4567
Q ss_pred eEEEEcC
Q 009763 446 NSVDFDH 452 (526)
Q Consensus 446 ~~i~~s~ 452 (526)
...+|+|
T Consensus 421 ~~p~Wsp 427 (429)
T PRK03629 421 KFPAWSP 427 (429)
T ss_pred CCcccCC
Confidence 7788876
No 232
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.4e-12 Score=118.69 Aligned_cols=256 Identities=10% Similarity=0.091 Sum_probs=146.7
Q ss_pred EEEEeCCCCcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCC-CE
Q 009763 247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KY 324 (526)
Q Consensus 247 v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~ 324 (526)
|++.+..+.+....+.+|...|.+++|+|..+ ++..++.+..|+|.|+++. .++..+..+ ..+++++|.-+. ++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcce
Confidence 66666666666667778899999999999766 7889999999999999986 566666666 889999998655 57
Q ss_pred EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE------EccCCcEEEEEeCCCcEEEEECCCC----ceeeE
Q 009763 325 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA------FHPDGLILGTGTSEALVKIWDVKSQ----ANVAK 394 (526)
Q Consensus 325 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~ 394 (526)
+..|..+|.|.+||++............ ....+|..++ ..+.|.+++....+ +..|.+.-. .++..
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~--~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVAN--VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhh--hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence 7788889999999998765332211100 1112333333 22334444444332 445554321 12222
Q ss_pred ecCCCCCeEEEEECCCCCE-EEEEeCC----cEEE----EEcCCCccceEEecCC--C---CCCeeEEEE-cCCCCEEEE
Q 009763 395 FDGHVGAVTAISFSENGYY-LATAAHD----GVKL----WDLRKLKNFRSFESSD--S---ETPTNSVDF-DHSGSYLAV 459 (526)
Q Consensus 395 ~~~~~~~i~~l~~s~~~~~-l~~~~~d----~i~i----wd~~~~~~~~~~~~~~--~---~~~i~~i~~-s~~~~~l~~ 459 (526)
+. ..+...++++.+-.+. |++.-.+ .++. -|.+.+..+....... . .-.-....+ .++..+++.
T Consensus 327 le-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 LE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred cC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 22 2445556666654333 3443331 0111 1222222221111100 0 000111222 345566666
Q ss_pred EeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-C-CCEEEEEeCCCcEEEeeCCC
Q 009763 460 ASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-D-AKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 460 ~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~s~~~dg~v~iw~l~~ 519 (526)
-+.+ +.+||. .....+.++.. ..+|.+++... + +.+|++-. |..++||..++
T Consensus 406 ~gd~tn~lil~D~----~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 406 VGDSTNELILQDP----HSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred ecCCcceeEEecc----chhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 5544 999997 55666666654 46777776643 3 44666654 67899987654
No 233
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.9e-11 Score=110.84 Aligned_cols=271 Identities=15% Similarity=0.232 Sum_probs=184.5
Q ss_pred CCCCeEEEEecCCCCEEEEEeC---CCcEEEEeCCC--CcEE--EEecccccceeEEEEecCCCEEEEEeC-CCcEEEEe
Q 009763 222 SKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPS--GQIV--TTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQ 293 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~---dg~v~vwd~~~--~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd 293 (526)
+.+..+-++|+++++.|.++.. +|.|..|.++. |++. ........+-+.++++++|++++++.. -|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 3456788999999998888754 47787777664 4442 222222334488999999999888875 68999999
Q ss_pred CCCCCceeeeEecccCccc----------eEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 294 GSEDGNYDCKHTLKDHTAE----------VQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
+...+.......+..|.+. +....+.|+++++++.+. --.|.+|++..|.....-...- .....-+.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRH 195 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRH 195 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCCCCcce
Confidence 9776654444334446655 889999999999998864 3479999999776543322111 22256789
Q ss_pred EEEccCCcEEEEEeC-CCcEEEEECCCC-c---eeeEec------CCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCC
Q 009763 363 AAFHPDGLILGTGTS-EALVKIWDVKSQ-A---NVAKFD------GHVGAVTAISFSENGYYLATAAHDG--VKLWDLRK 429 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~-dg~i~iwd~~~~-~---~~~~~~------~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~ 429 (526)
+.|||++++.++.++ +++|.+|..... . .++.+. ........|..+++|++|.++...- |.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 999999998887665 789999998763 2 222221 1234567899999999999987653 88887765
Q ss_pred Ccc-ceEEecC-CCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 430 LKN-FRSFESS-DSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 430 ~~~-~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
... +...... ......+.+.|+++|++|++++.+ +.+|..+..+.....+.... ......|+.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~---~~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYA---VVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccccc---CCCCcEEEEEc
Confidence 322 2222222 224458899999999999999887 99999866444333333321 13355677664
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.3e-13 Score=133.84 Aligned_cols=234 Identities=17% Similarity=0.141 Sum_probs=147.1
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCCceeeeEecccCccceEEEEEecC
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (526)
..|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.. .. +....+.+....|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~---l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RV---VANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EE---eecCCCCccceEECCC
Confidence 467777774 44445555677889999999999988877643 3599999987521 22 2223345668999999
Q ss_pred CCEEE-EEECCCeEEEEe--CCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CCcEEEEEC--CCCceeeEe
Q 009763 322 NKYFV-TASLDNTWCFYD--LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDV--KSQANVAKF 395 (526)
Q Consensus 322 ~~~l~-s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~--~~~~~~~~~ 395 (526)
|+.|+ +.+.+|...+|. +..+. ...+. .+........|+|||+.|+..+. +|...+|.+ .++... .+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-----~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~l 323 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-----QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RV 323 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECC-----CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EE
Confidence 99876 456777756554 54443 33332 12234556789999988776553 456666654 444332 22
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEE
Q 009763 396 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 468 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 468 (526)
...........|+|+|++|+..+.+ + |.+||+.+++... +.. ........|+|+|++|+.++.+ ..+|-
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD---TTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC---CCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 2222334467899999999876654 2 9999998776432 222 1234678999999999988765 34554
Q ss_pred EecccCcceeeeeecCCCCCcceEEEEEcCC
Q 009763 469 VASVKADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
++.. ......+..+ .+.+...+|+|-
T Consensus 400 ~~~~---g~~~~~l~~~--~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSSD---GRIKQRLSVQ--GGDVREPSWGPF 425 (427)
T ss_pred EECC---CCceEEeecC--CCCCCCCccCCC
Confidence 4332 2222223222 455666778763
No 235
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=9.8e-13 Score=134.44 Aligned_cols=249 Identities=18% Similarity=0.223 Sum_probs=171.4
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEeccc---CccceEEEEEec--CCCEEEEEECCCeEEEEeCC-
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD---HTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLS- 340 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~- 340 (526)
.-..+.|+|-...++++...-.|+|||.+.+ +....|.. ....|+.+.+-. |...+++|+.||.|+||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~---~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG---RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC---ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 4567888888888999887789999999886 44444443 335688888854 45689999999999999742
Q ss_pred ----CCeEEEEeecCC--CCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC-CCCCeEEEEECC-CCC
Q 009763 341 ----SGICLTQVSDAG--TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSE-NGY 412 (526)
Q Consensus 341 ----~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~-~~~ 412 (526)
..+.+..+.... ..+..+.-.-+.|.....+|++++.-..|+|||......+..+.. ....|+++.-+. .|+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 223333332110 011111224567777555566666678999999988777766643 345677765443 479
Q ss_pred EEEEEeCCc-EEEEEcCCCcc---ceEEecCCCCCCeeEEEEcCCCCE-EEEEeCC--eEEEEEecccCcceeeeeecCC
Q 009763 413 YLATAAHDG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQVASVKADWNCIKTFPDL 485 (526)
Q Consensus 413 ~l~~~~~d~-i~iwd~~~~~~---~~~~~~~~~~~~i~~i~~s~~~~~-l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~ 485 (526)
.+++|..|| |++||.|.... +..+..+....+|..+.+.+.|-. |++|+.+ |++|++.... .....+...+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~--~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS--KETFLTIVAH 1300 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--ccccceeeec
Confidence 999999999 99999987543 555555544445999999987755 8888887 8888885521 1111111122
Q ss_pred CC-CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 486 SG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 486 ~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.. .+.++++..+++...+|+|+. +.|+||++.+..
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 11 225899999999999999998 999999998754
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.1e-12 Score=132.23 Aligned_cols=219 Identities=15% Similarity=0.141 Sum_probs=144.4
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEE-EEeCCCcEEEEeCCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSE 296 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~ 296 (526)
.+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||.++.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 456678999999999998877643 359999998886543 333345567899999998876 567788877776533
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEEC-CCeEEEEe--CCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYD--LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
.+ .....+..+........|+|+|+.++..+. +|...+|. +.++.... +... + .......|+|||++|+
T Consensus 272 ~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~---g--~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 272 DG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT---G--SYNTSPRISPDGKLLA 343 (427)
T ss_pred CC--CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC---C--CCcCceEECCCCCEEE
Confidence 21 223444455555677899999998876654 45555554 44544322 2211 1 1234578999999988
Q ss_pred EEeCCC---cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc----EEEEEcCCCccceEEecCCCCCCee
Q 009763 374 TGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTN 446 (526)
Q Consensus 374 ~g~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i~ 446 (526)
..+.++ .|.+||+.+++... +... .......|+|||+.|+.++.++ +.+.++ .+.....+..+ ...+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CCCCC
Confidence 776554 59999998876543 3222 2346789999999988877553 666666 34444444432 34566
Q ss_pred EEEEcCC
Q 009763 447 SVDFDHS 453 (526)
Q Consensus 447 ~i~~s~~ 453 (526)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 6777763
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.4e-12 Score=123.50 Aligned_cols=268 Identities=17% Similarity=0.262 Sum_probs=170.5
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEE-----eCC-----CcEEEEeCC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-----SAD-----KTVRVWQGS 295 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~d-----g~i~iwd~~ 295 (526)
....+++++|+++|.+. +..+.|++..++..+.+.... .+.++.|+|.|.+|.+- ..+ -.+.+|++.
T Consensus 37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 66788899999888775 678999999888655554433 68999999999988762 122 346799988
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE-------------
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS------------- 362 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~------------- 362 (526)
++ .....+......-++..|+.|..+.+-- ..+.+.+|++...+.+... -|...++.
T Consensus 114 t~---~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~k------l~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 114 TG---VQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHK------LSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred cc---eehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeee------eeccceeeEEecCCCCCceEE
Confidence 73 2222222222222677787766543221 2346777776553222111 11122333
Q ss_pred ---------------------------------------EEEccCCc-EEEEE--eCC---------CcEEEEECCCCce
Q 009763 363 ---------------------------------------AAFHPDGL-ILGTG--TSE---------ALVKIWDVKSQAN 391 (526)
Q Consensus 363 ---------------------------------------~~~~~~~~-~l~~g--~~d---------g~i~iwd~~~~~~ 391 (526)
+.|++-|. +|+.+ .-| ..++++++.....
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 34444332 11111 111 2445555542222
Q ss_pred eeEecCCCCCeEEEEECCCCCEEEEEeCC--c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----
Q 009763 392 VAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----- 463 (526)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----- 463 (526)
...+. ..++|+++.|+++|+-++++..- . +.|||++- +.+..+ . .++-+.+-|+|.|++++.++-+
T Consensus 264 ~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~--egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 264 SVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--P--EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred EEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--C--CCCccceEECCCCCEEEEeecCCCCCc
Confidence 22222 46899999999999887776543 2 99999873 444333 2 4677899999999999887765
Q ss_pred eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC------CCcEEEeeCCCC
Q 009763 464 IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM------DRNLRVFGLPGN 520 (526)
Q Consensus 464 i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~l~~~ 520 (526)
+.|||+ .+...+..+... .-+-+.|+|||++++|++. |+.++||+..+.
T Consensus 338 mEvwDv----~n~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 338 MEVWDV----PNRKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred eEEEec----cchhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999998 456666666542 4567899999999998875 688999998764
No 238
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.56 E-value=4.1e-15 Score=106.08 Aligned_cols=52 Identities=46% Similarity=0.793 Sum_probs=49.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
++|+||++++++||++| +||+|||++|++|++++++||+|+++++.+||++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDPVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCCEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence 57999999999999996 89999999999999999999999999999999987
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=1.1e-12 Score=116.51 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=112.4
Q ss_pred EEEEecCCCCEEEEEeC----------CCcEEEEeCCC-CcEEEEecc-cccceeEEEEecCCCEEEEE--eCCCcEEEE
Q 009763 227 VSLDIHYSKDVIATGGV----------DTNAVLFDRPS-GQIVTTLSG-HSKKVTSVKFVTEGDLFLTG--SADKTVRVW 292 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~----------dg~v~vwd~~~-~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~--s~dg~i~iw 292 (526)
..+.|+++|++|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46779999987665433 23345554422 233444432 34579999999999986554 457899999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
|++. ..+..+ +...++.+.|+|+|+++++++.+ |.+.+||.++.+.+..... ..++.++|+|||
T Consensus 89 d~~~----~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-------~~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVKG----KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-------SDATDVEWSPDG 155 (194)
T ss_pred cCcc----cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-------CcEEEEEEcCCC
Confidence 9963 555555 35678899999999999998754 6799999998888776642 247899999999
Q ss_pred cEEEEEeC------CCcEEEEECCCCceeeEe
Q 009763 370 LILGTGTS------EALVKIWDVKSQANVAKF 395 (526)
Q Consensus 370 ~~l~~g~~------dg~i~iwd~~~~~~~~~~ 395 (526)
++|++++. |+.++||+.. |+.+...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99999874 6788999984 5555443
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.8e-12 Score=131.01 Aligned_cols=216 Identities=15% Similarity=0.095 Sum_probs=145.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEE-EEeCCC--cEEEEeC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG 294 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~iwd~ 294 (526)
.+...+.+.+|+|+|+.|+..+.+ ..|++||+.+++... +..+.+...+..|+|+|+.|+ +.+.+| .|.+||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 345678999999999988887643 469999998776543 333444556889999998765 455555 5899998
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCCEEEEEEC-CCe--EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
.++. ...+..+.......+|+|+|+.|+.++. +|. |.++|+.+++...... . + ......+|+|||+.
T Consensus 280 ~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~---g--~~~~~~~~SpDG~~ 349 (433)
T PRK04922 280 GSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-Q---G--NYNARASVSPDGKK 349 (433)
T ss_pred CCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-C---C--CCccCEEECCCCCE
Confidence 7752 3344455555678899999998887764 444 7777877765433221 1 1 22346899999999
Q ss_pred EEEEeCCC---cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCccceEEecCCCCCC
Q 009763 372 LGTGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETP 444 (526)
Q Consensus 372 l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~ 444 (526)
|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ . |.++|+.. .....+... ...
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~ 424 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGE 424 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccC--CCC
Confidence 88765443 5999999887654 333 22234567999999988776654 2 88888854 333444332 345
Q ss_pred eeEEEEcC
Q 009763 445 TNSVDFDH 452 (526)
Q Consensus 445 i~~i~~s~ 452 (526)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 56667765
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.5e-12 Score=115.58 Aligned_cols=155 Identities=21% Similarity=0.388 Sum_probs=109.9
Q ss_pred eEEEEecCCCEEEEEeC----------CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEE--ECCCeEEE
Q 009763 269 TSVKFVTEGDLFLTGSA----------DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA--SLDNTWCF 336 (526)
Q Consensus 269 ~~l~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~--s~dg~i~i 336 (526)
..+.|+++|++|+.-.. -|...+|.++..+.......+. ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45788898887654332 1345566554332212222222 34579999999999987654 35789999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC---CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCE
Q 009763 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (526)
||++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||.++.+.+..+. | ..++.++|+|+|++
T Consensus 88 yd~~-~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY 157 (194)
T ss_pred EcCc-ccEeEeec-------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE
Confidence 9997 55555553 2467889999999999998754 679999999888887765 3 34789999999999
Q ss_pred EEEEeC------C-cEEEEEcCCCccceE
Q 009763 414 LATAAH------D-GVKLWDLRKLKNFRS 435 (526)
Q Consensus 414 l~~~~~------d-~i~iwd~~~~~~~~~ 435 (526)
|+++.. | +++||++. |+.+..
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeEe
Confidence 999864 3 39999985 554443
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.3e-12 Score=120.01 Aligned_cols=216 Identities=15% Similarity=0.208 Sum_probs=161.6
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc----EEEEecccccceeEEEEecCC-CEEEEEeCC--CcEEEEeCCC
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLSGHSKKVTSVKFVTEG-DLFLTGSAD--KTVRVWQGSE 296 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~----~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d--g~i~iwd~~~ 296 (526)
.+|..+... ...|++|-.+|.+.+|..+.+. ....+..+ ..+..+.-++.. .++++|+.. ..+.|||++.
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 345554433 4577888889999999987442 22333333 446666666644 456679988 8899999987
Q ss_pred CCceeeeEeccc---------CccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCeeEEE
Q 009763 297 DGNYDCKHTLKD---------HTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 297 ~~~~~~~~~~~~---------h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~ 364 (526)
. +.+..-+. -.-.++++.|.+. ...|++++.-+.+++||.+.++. +..+. -...+++++.
T Consensus 183 ~---~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-----~~E~~is~~~ 254 (412)
T KOG3881|consen 183 S---KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-----FLENPISSTG 254 (412)
T ss_pred c---eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-----cccCcceeee
Confidence 5 22222111 1124667888876 78899999999999999987653 44443 2346899999
Q ss_pred EccCCcEEEEEeCCCcEEEEECCCCceeeE-ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCC
Q 009763 365 FHPDGLILGTGTSEALVKIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 365 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 442 (526)
..|+++++++|..-|.+..||++.++.... +++..+.|+++..+|++.++++++-|. |+|||+.+.+.+..... .
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv---K 331 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---K 331 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh---h
Confidence 999999999999999999999999988776 888899999999999999999999998 99999999776655544 3
Q ss_pred CCeeEEEEcCC
Q 009763 443 TPTNSVDFDHS 453 (526)
Q Consensus 443 ~~i~~i~~s~~ 453 (526)
..++++.+.++
T Consensus 332 s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 SRLTFILLRDD 342 (412)
T ss_pred ccccEEEecCC
Confidence 55677777654
No 243
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.53 E-value=7.5e-14 Score=121.48 Aligned_cols=159 Identities=18% Similarity=0.324 Sum_probs=126.2
Q ss_pred CCCeEEEEecCC-CC--EEEEEeCCCcEEEEeCCCCcE----------EEEecccccceeEEEEecCCCEEEEEeCCCcE
Q 009763 223 KPGIVSLDIHYS-KD--VIATGGVDTNAVLFDRPSGQI----------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (526)
Q Consensus 223 ~~~I~~~~~s~~-~~--~l~t~~~dg~v~vwd~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 289 (526)
.+.+.|..+... +. ++++|-.+|.|.+||+.++.. ......|..+|.++.|.+.-+.=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 456778775442 33 567788899999999998733 33445799999999998765566788888899
Q ss_pred EEEeCCCC-CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC
Q 009763 290 RVWQGSED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (526)
Q Consensus 290 ~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 368 (526)
..|+++.. +....-....-..-.|..+..-||++.+++++.|+.|++|..++...+..+. -|...|++++|+|+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-----yHsagvn~vAfspd 304 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-----YHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-----hhhcceeEEEeCCC
Confidence 99998764 2222222222233468889999999999999999999999999999888876 66789999999999
Q ss_pred CcEEEEEeCCCcEEEEEC
Q 009763 369 GLILGTGTSEALVKIWDV 386 (526)
Q Consensus 369 ~~~l~~g~~dg~i~iwd~ 386 (526)
..++|.++.|+.|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=9.9e-11 Score=107.37 Aligned_cols=275 Identities=15% Similarity=0.220 Sum_probs=186.4
Q ss_pred CCcEEEEeCCC--CcE-EEEecccccceeEEEEecCCCEEEEEeC---CCcEEEEeCCCC-CceeeeEecccCccceEEE
Q 009763 244 DTNAVLFDRPS--GQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSED-GNYDCKHTLKDHTAEVQAV 316 (526)
Q Consensus 244 dg~v~vwd~~~--~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l 316 (526)
+.-|++|++.+ |+. ...+-.+.+.++-|+|+|+++.|.++.. +|.|..|.++.. +.+..+.....-..+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799998873 222 1122346677899999999999888865 477888887753 4344443333333445889
Q ss_pred EEecCCCEEEEEEC-CCeEEEEeCCC-CeEE---EEeecCCCCCC----CCCeeEEEEccCCcEEEEEeC-CCcEEEEEC
Q 009763 317 TVHATNKYFVTASL-DNTWCFYDLSS-GICL---TQVSDAGTDGR----PEGYTSAAFHPDGLILGTGTS-EALVKIWDV 386 (526)
Q Consensus 317 ~~~p~~~~l~s~s~-dg~i~iwd~~~-~~~~---~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~ 386 (526)
+++++|++++++.. -|.|.++-+.. |... ..+...+...| ...+.+..+.|++++|++.+- -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999998875 58899999865 3322 22221111111 122788999999998888754 246999999
Q ss_pred CCCceee----EecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCC-ccceEEecC-------CCCCCeeEEEEcC
Q 009763 387 KSQANVA----KFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL-KNFRSFESS-------DSETPTNSVDFDH 452 (526)
Q Consensus 387 ~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~-~~~~~~~~~-------~~~~~i~~i~~s~ 452 (526)
..++... .++ .......|.|+|++++..+.++= + |.+|..... ..+..++.. ........|.+++
T Consensus 175 ~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 8775422 222 34567899999999998877664 4 999988763 222222211 1145678899999
Q ss_pred CCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC-CcEEEeeCCCCC
Q 009763 453 SGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-RNLRVFGLPGND 521 (526)
Q Consensus 453 ~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~v~iw~l~~~~ 521 (526)
+|++|+++... |.+|.++........+.....+ ......+.|+++|++|++++.+ ..|.+|..+...
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99999998765 8888887655544444444432 4447889999999999988865 469999886543
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=6.7e-12 Score=111.18 Aligned_cols=269 Identities=13% Similarity=0.140 Sum_probs=175.5
Q ss_pred CCcEEEEeCCCCcEEE--Ee-cccccceeEEEEec---CCC-EEEEEeCCCcEEEEeCCCCCceeeeEecccCc---cce
Q 009763 244 DTNAVLFDRPSGQIVT--TL-SGHSKKVTSVKFVT---EGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT---AEV 313 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~--~~-~~h~~~V~~l~~~~---~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v 313 (526)
.|.+.+|++...+... ++ ..-...+..+.|.- +|. .++-+..+|.|.+|........-.+..+.... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4778899887655433 11 12345577888863 555 56777788999999866542211222222111 124
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCC-ce
Q 009763 314 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-AN 391 (526)
Q Consensus 314 ~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~-~~ 391 (526)
.++.|++.+..++++..+|.+.+-+........... -..|..+.....|+. +.+++++|+.||.+..||+|.. +.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~---wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQT---WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeeccc---ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 577889999999999999999976655544333111 236777888888887 6689999999999999999943 33
Q ss_pred eeE-ecCCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCC-CccceEEecCCCCCCeeEEEEcCCC--CEEEEEeCC-e
Q 009763 392 VAK-FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSG--SYLAVASAD-I 464 (526)
Q Consensus 392 ~~~-~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~--~~l~~~~~d-i 464 (526)
+.. .+.|...|.+|.-+| .+.++++|+.|. |++||.|+ ++++..-.. .+.|..+.++|.- .+|+++-.+ .
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ 278 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGA 278 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcCc
Confidence 333 345888999998887 588999999997 99999995 555544333 5789999999964 345555444 7
Q ss_pred EEEEEecccCcceee-eeecCCCCCcceEEEEEcCCCCEEEEEe-CCCcEE-EeeCCCC
Q 009763 465 RVYQVASVKADWNCI-KTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLR-VFGLPGN 520 (526)
Q Consensus 465 ~v~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~-iw~l~~~ 520 (526)
+|.+........... ..... |.+-+..-.|.....+|++++ .|..++ +|-.-++
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~--hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKI--HDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eEEEecccccchheeeecccc--ccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 777764433322222 22222 244455556644446788865 577755 7754443
No 246
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=6.5e-11 Score=115.73 Aligned_cols=241 Identities=19% Similarity=0.226 Sum_probs=159.4
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe-CCCcEEEEeCCCCCceeeeEe
Q 009763 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 305 (526)
..+.|+|||+++++++.||.|.++|+.+++.+.++..... ..++++++||++++++. .++.+.++|..+. +.+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl---e~v~~ 115 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETL---EPVKT 115 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccc---cceee
Confidence 4567999999999999999999999999999999885444 67899999999988775 6899999999886 44444
Q ss_pred ccc-------CccceEEEEEecCCCEEEEEECC-CeEEEEeCCCCeEEE--EeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 306 LKD-------HTAEVQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 306 ~~~-------h~~~v~~l~~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
+.. ....+..+..+|....++..-.| +.|.+.|....+.+. .+.. ........|+|++++++++
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~------g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV------GRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--------TTEEEEEE-TTSSEEEEE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc------cccccccccCcccceeeec
Confidence 432 23467888888888866666554 889888987654332 2221 1356788999999887664
Q ss_pred -eCCCcEEEEECCCCceeeEec-------------------------------------------------------CCC
Q 009763 376 -TSEALVKIWDVKSQANVAKFD-------------------------------------------------------GHV 399 (526)
Q Consensus 376 -~~dg~i~iwd~~~~~~~~~~~-------------------------------------------------------~~~ 399 (526)
..++.|-++|..+++.+..+. ...
T Consensus 190 ~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 190 ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 456678888887765443221 111
Q ss_pred CCeEEEEECCCCCEEEEE---eCC-c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEEe
Q 009763 400 GAVTAISFSENGYYLATA---AHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVA 470 (526)
Q Consensus 400 ~~i~~l~~s~~~~~l~~~---~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~ 470 (526)
++ ..+..+|++.++.+. +.+ . |.++|.++.+....+.... ...+..+.|+++|+++.++..+ +.|||.
T Consensus 270 ~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~- 346 (369)
T PF02239_consen 270 GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA- 346 (369)
T ss_dssp SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEET-
T ss_pred Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEEC-
Confidence 12 456779999999998 444 3 9999999987776665421 2348999999999988876554 777775
Q ss_pred cccCcceeeeeec
Q 009763 471 SVKADWNCIKTFP 483 (526)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (526)
.+++.+..+.
T Consensus 347 ---~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 ---KTLKEKKRIP 356 (369)
T ss_dssp ---TTTEEEEEEE
T ss_pred ---CCcEEEEEEE
Confidence 6667666654
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4e-11 Score=114.93 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=192.2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC-----------CCcEEEEeC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----------DKTVRVWQG 294 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----------dg~i~iwd~ 294 (526)
=+-+.|||.|.+|++-..-| |.+|--.+...++.+. |.+ |.-+.|||+.++|+|=+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 36789999999999988665 8899877666666665 554 899999999999998653 257999999
Q ss_pred CCCCceeeeEeccc--Cccce-EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 295 SEDGNYDCKHTLKD--HTAEV-QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 295 ~~~~~~~~~~~~~~--h~~~v-~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
.++ ...+.+.. ....+ .-..|+.+++|++.-.. .+|.||+..+...+..-. -....|....|+|.+++
T Consensus 290 ~tG---~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-----lki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 290 ATG---LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-----LKISGIRDFSWSPTSNL 360 (698)
T ss_pred ccc---chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----cCCccccCcccCCCcce
Confidence 997 34444432 12222 34678999999988776 578999877643332211 23357889999999888
Q ss_pred EEEEeC-----CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC-------C----cEEEEEcCCCcc-ce
Q 009763 372 LGTGTS-----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-------D----GVKLWDLRKLKN-FR 434 (526)
Q Consensus 372 l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-------d----~i~iwd~~~~~~-~~ 434 (526)
||-=+. -..+.+-.+.+++.+.+-.-++-.=..+-|-.+|.+|+.--+ . .+-||.++.... +.
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 875332 134566666666655554444333345678788888876422 1 166777765443 33
Q ss_pred EEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe--
Q 009763 435 SFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-- 507 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-- 507 (526)
.+.. ...+...+|.|.|..+++-+.+ +++|.+......+..+..+.. ...+.+.|+|.|++++.+.
T Consensus 441 ~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 441 VVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred eeec---chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEec
Confidence 3333 5678999999999888765544 999999766666777777653 4578899999999988764
Q ss_pred -CCCcEEEeeCCC
Q 009763 508 -MDRNLRVFGLPG 519 (526)
Q Consensus 508 -~dg~v~iw~l~~ 519 (526)
..|.+.++|.+-
T Consensus 514 s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 514 SRRGDLEFYDTDY 526 (698)
T ss_pred ccccceEEEecch
Confidence 568899999874
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.2e-11 Score=121.58 Aligned_cols=277 Identities=13% Similarity=0.138 Sum_probs=193.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---------------EEEEecccccceeEEEEecCCCEEEEEeCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---------------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 287 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~---------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg 287 (526)
.....|+.|+....++|+||.||.++|..+.+.. .-+++.||++.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3467899999999999999999999999875421 1246779999999999999888999999999
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
.|.||-+-.+.-.+.. .-....+-|.+++|+.+|..++..-.||.|.+=.++.++....-.. + .....+.|++
T Consensus 94 lIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----G--QLLAHVLWSE 166 (1189)
T ss_pred eEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----h--heccceeecc
Confidence 9999987654211111 1123556799999999999999999999998877765543222110 1 2355789999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCc-------eeeE----ecCCCCCeEEEEEC--------CCCCEEEEEeCCc-EEEEEc
Q 009763 368 DGLILGTGTSEALVKIWDVKSQA-------NVAK----FDGHVGAVTAISFS--------ENGYYLATAAHDG-VKLWDL 427 (526)
Q Consensus 368 ~~~~l~~g~~dg~i~iwd~~~~~-------~~~~----~~~~~~~i~~l~~s--------~~~~~l~~~~~d~-i~iwd~ 427 (526)
|...++.+-.+|.+.+||....- +... +......|..+.|. |+...|+++-.+| +.|..-
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 99998888899999999975321 1011 11122235556554 3667788888887 777654
Q ss_pred CCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----------eEEEEEecccCcceeeeeecCCCCCcceEEEEE
Q 009763 428 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 428 ~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
.+......+.. +..+..+.|+++|.+|++++.+ +.+|. .-+..+.++... ...|++++|
T Consensus 247 eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvp--g~~It~lsW 316 (1189)
T KOG2041|consen 247 ENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVP--GSCITGLSW 316 (1189)
T ss_pred cCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecC--CceeeeeEE
Confidence 44443344443 4578899999999999998875 22332 234455555554 668999999
Q ss_pred cCCCCEEEEEeCCCcEEEeeC
Q 009763 497 GPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 497 s~~~~~l~s~~~dg~v~iw~l 517 (526)
-..|-.++.+ .|+.|++=++
T Consensus 317 Eg~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 317 EGTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred cCCceEEEEE-ecceEEEEee
Confidence 7766666555 3666655443
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=3.4e-12 Score=115.32 Aligned_cols=253 Identities=15% Similarity=0.290 Sum_probs=172.5
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC--ceeeeEecccCc------------cceEEEEEecCCC--EEEEE
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATNK--YFVTA 328 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~p~~~--~l~s~ 328 (526)
..-|.++.|...|.+|++|..+|.|.+|.-.... .+.....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999654322 233444555554 3588899988664 68888
Q ss_pred ECCCeEEEEeCCCCeEEE---------------Eee----------------cCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 329 SLDNTWCFYDLSSGICLT---------------QVS----------------DAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 329 s~dg~i~iwd~~~~~~~~---------------~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
+.|.+|++|.+....... .+. ..-...|...|.++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999875432111 000 00123567788999999999988886 4
Q ss_pred CCcEEEEECCCCce---eeEecCCC-----CCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccc----eEEecCC---
Q 009763 378 EALVKIWDVKSQAN---VAKFDGHV-----GAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNF----RSFESSD--- 440 (526)
Q Consensus 378 dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~----~~~~~~~--- 440 (526)
|=.|.+|++.-... +..++.+. .-|++..|+|. .++++-++..| |++-|+|..... +.+....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 67899999864322 22233332 35888999995 45555555556 999999953221 1111110
Q ss_pred -------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCC----------Ccce---EEEEEcCC
Q 009763 441 -------SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSG----------TGKA---TCVKFGPD 499 (526)
Q Consensus 441 -------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~----------~~~v---~~~~~s~~ 499 (526)
--..|..+.|+++|+|+++-+.- +++|++....+ ++.++..|.. ...| ..++|+.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~---pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK---PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC---cceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 02468899999999999998877 99999955433 3333333211 1222 45789999
Q ss_pred CCEEEEEeCCCcEEEeeCCCCC
Q 009763 500 AKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 500 ~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+.++++|+....+++|++..+.
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEecccccceEEEecCCCCc
Confidence 9999999999999999976543
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.2e-11 Score=116.78 Aligned_cols=204 Identities=15% Similarity=0.186 Sum_probs=159.3
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEE------ec--------------CCCEEEEEECCCeE
Q 009763 275 TEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTV------HA--------------TNKYFVTASLDNTW 334 (526)
Q Consensus 275 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~------~p--------------~~~~l~s~s~dg~i 334 (526)
|...+++....||.++||+...+...........-.+..++..| +| +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 34668999999999999998876332222222222334444444 22 22357778889999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEE
Q 009763 335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 414 (526)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 414 (526)
.+|++..++....+. ...|.+.|.++.++.+-..|.+++.|+.+..|+......+..++.....+.+++.+|||..+
T Consensus 83 ~~ys~~~g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEecCCeEEEEEe---cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 999999999888887 44788999999999999999999999999999999999999999888899999999999999
Q ss_pred EEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCC-----CCEEEEEeCC---eEEEEEecccCcceeeeeecC
Q 009763 415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-----GSYLAVASAD---IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 415 ~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~-----~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~ 484 (526)
++++.. |++||+.+.+.+..|..| .++|+++.|.-+ |.++.++..- +.+|..+...+.......+..
T Consensus 160 ~~as~~-ik~~~~~~kevv~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~ 234 (541)
T KOG4547|consen 160 LTASRQ-IKVLDIETKEVVITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTV 234 (541)
T ss_pred Eeccce-EEEEEccCceEEEEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeecc
Confidence 988633 999999999999999887 789999999876 7777765432 889988765444444444433
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=4.4e-12 Score=130.04 Aligned_cols=272 Identities=15% Similarity=0.218 Sum_probs=186.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEe-c------CCCEEEEEeCCCcEEEEeCCCC
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-T------EGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~-~------~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
++++..+-. ++|++|. .-.|.+||+.++..+..+... ..+.++ + .+.+++++..-+-+..=+...
T Consensus 9 ~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~----~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~- 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQS----KILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASN- 80 (967)
T ss_pred cccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhh----cccccccccccceeccceEEEEEeecceeecchhh-
Confidence 444444443 5666554 567999999988765544311 011111 1 233455555444343322211
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
+.... ....|....+......++.++.+..+.+||...+.....+..... ..-....-+-++++.-++++|+.
T Consensus 81 ---~~~~~---~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 81 ---QIIER---FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred ---hhhhh---ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccCcEEEEEeccc
Confidence 11222 223344455555678888899999999999988876665532100 00011223345667789999999
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
-+.|.+|+....+.-..+.+|.+.|.++.|+.+|.++++.++|. +++|++.+.+... -....|...+..+.|.|+ .
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--e
Confidence 99999999985444446889999999999999999999999998 9999999887766 222344788999999998 9
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+++++.| .++|.. +...+..+..|. ...+..++..++...+++++.||.+++|++...
T Consensus 231 i~t~gedctcrvW~~-----~~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGV-----NGTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEeccceEEEEEec-----ccceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999 899965 333444666663 557899999999999999999999999998654
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=5.1e-11 Score=120.53 Aligned_cols=204 Identities=15% Similarity=0.146 Sum_probs=137.7
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCCceeeeEecccCccceEEEEEec
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 320 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p 320 (526)
...|.++|.... ....+..+...+.+..|+|+|++|+.++.+ ..|++||+.++. . ..+..+...+.++.|+|
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~-~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---R-EKVASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---E-EEeecCCCCccceEECC
Confidence 345778887543 344455566778999999999998887654 479999998752 1 22233455677789999
Q ss_pred CCCEEEE-EECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CC--cEEEEECCCCceeeE
Q 009763 321 TNKYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAK 394 (526)
Q Consensus 321 ~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~ 394 (526)
+|+.|+. .+.++ .|++||+.++....... +........|+|||+.|+..+. ++ .|+++|+.+++.. .
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCC------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 9987764 44444 58899998875433221 1223446789999988776554 33 5888888776543 3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCc----EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 395 FDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 395 ~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
+..+...+....|+|+|.+++.++.++ |.+||+.++.. ..+... .......|+|+|++|+..+.+
T Consensus 317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~---~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT---GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC---CCCCCceECCCCCEEEEEEeC
Confidence 443445677889999999988877652 88899887543 222221 223456899999999887765
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=8.6e-11 Score=119.10 Aligned_cols=232 Identities=15% Similarity=0.093 Sum_probs=145.8
Q ss_pred cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCCceeeeEecccCccceEEEEEecCC
Q 009763 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 322 (526)
Q Consensus 246 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 322 (526)
.|.++|...+. ...+..+...+....|+|||+.|+..+.+ ..|.+||+.++.. + .+....+.+....|+|+|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-E---EccCCCCCcCCeEECCCC
Confidence 47777877544 34455567789999999999988776643 3688999977521 2 222233445578999999
Q ss_pred CEEEE-EECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CC--cEEEEECCCCceeeEec
Q 009763 323 KYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD 396 (526)
Q Consensus 323 ~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~ 396 (526)
+.|+. .+.+| .|.+||+.++.... +. .+........|+|||+.|+..+. +| .|+++|+.+++... +.
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt 327 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VT-----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT 327 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-cc-----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence 98764 44455 68888998876533 32 12234556789999987766553 33 57777887776432 22
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEE
Q 009763 397 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 469 (526)
Q Consensus 397 ~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 469 (526)
..........|+|+|++|+..+.. + |.+||+.+++.. .+... .......|+|+|+.++..+.+ ..+|.+
T Consensus 328 ~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 328 FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 122233457899999998877643 2 888999876542 22221 122346899999999887654 455555
Q ss_pred ecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 470 ASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
+... .....+.. +.+.+...+|+|
T Consensus 404 ~~~g---~~~~~l~~--~~g~~~~p~ws~ 427 (430)
T PRK00178 404 SING---RVRLPLPT--AQGEVREPSWSP 427 (430)
T ss_pred ECCC---CceEECcC--CCCCcCCCccCC
Confidence 3321 22222222 134556667765
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=1.9e-11 Score=110.58 Aligned_cols=244 Identities=18% Similarity=0.270 Sum_probs=175.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe-CCCCcEEEEec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFD-RPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd-~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
...+|.+.|+....-|..+-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|+.|-..|++.-+.+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 3556777888888888888899999999999995 44454433332 235678999999999999999999999988765
Q ss_pred CC-CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 296 ED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 296 ~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.. +.....+....|...|..+.|+-....+++.+.|..+.---.+.+..+..+... ...+++.+.- .+.+.
T Consensus 99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~------~~~t~~~~d~--~~~fv 170 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE------TPASALQFDA--LYAFV 170 (404)
T ss_pred hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee------ccCCCCceee--EEEEe
Confidence 43 112445556679999999999988899999999988776666666544333211 0111111211 15666
Q ss_pred EeCCCcEEEEECC--CCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 375 GTSEALVKIWDVK--SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 375 g~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
|...|.|....+. .-..+.++.+|.+.+.+++|.+....|++|..|. +.+||+--.+.+. +....+...+..+...
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-YELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-eeeccchhhhhhhhhh
Confidence 7777777665543 3467888999999999999999999999999997 9999996544332 2223335566666666
Q ss_pred CCCCEEEEEeCC--eEEEEEe
Q 009763 452 HSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 452 ~~~~~l~~~~~d--i~v~~~~ 470 (526)
+--+.+++++.| +.+|+++
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhheeeeeccCCCeEEEEecc
Confidence 666777777777 8888875
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.9e-11 Score=118.32 Aligned_cols=187 Identities=19% Similarity=0.298 Sum_probs=150.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecc---cccceeEEEEe--------------------cCCCEEEEEeCCCcE
Q 009763 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG---HSKKVTSVKFV--------------------TEGDLFLTGSADKTV 289 (526)
Q Consensus 233 ~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~---h~~~V~~l~~~--------------------~~~~~l~s~s~dg~i 289 (526)
|...++|....||.+++|+...++....|.. -++..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776652 22334444442 123468888899999
Q ss_pred EEEeCCCCCceeeeEec--ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 290 RVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 290 ~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
.+|++..+ +....+ ..|.+.|+++.++.+-..|.+++.|+.+..|+......+..+.. ....+.+++++|
T Consensus 83 ~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-----~~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-----QKPLVSSLCISP 154 (541)
T ss_pred EEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-----CCCccceEEEcC
Confidence 99999876 344433 47999999999999999999999999999999999988888763 345789999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCC-----CCEEEEEeCC--cEEEEEcCC
Q 009763 368 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-----GYYLATAAHD--GVKLWDLRK 429 (526)
Q Consensus 368 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~l~~~~~d--~i~iwd~~~ 429 (526)
||.++++++ +.|++||+.+.+.+..|.+|.++|++++|-.+ |.++.++..- ++.+|-...
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999886 78999999999999999999999999999876 6777765443 388886654
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=1.8e-09 Score=103.24 Aligned_cols=257 Identities=12% Similarity=0.110 Sum_probs=160.9
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC----------CCcEEEEeCCCCCceeeeEecccC-----
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA----------DKTVRVWQGSEDGNYDCKHTLKDH----- 309 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~h----- 309 (526)
++|.+.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||..+. +.+..+..-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---LPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---cEEeEEccCCCchh
Confidence 899999999999988887544333 34 8999998777655 789999999887 455444321
Q ss_pred --ccceEEEEEecCCCEEEEEE-C-CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEE
Q 009763 310 --TAEVQAVTVHATNKYFVTAS-L-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (526)
Q Consensus 310 --~~~v~~l~~~p~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 385 (526)
......++++|+|++++... . +..+.++|+.+++.+..+... ....-...+++..++.+ .||......
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp------~~~~vy~t~e~~~~~~~--~Dg~~~~v~ 173 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP------DCYHIFPTANDTFFMHC--RDGSLAKVG 173 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC------CCcEEEEecCCccEEEe--ecCceEEEE
Confidence 22344788999999988776 3 689999999999999888632 11122222222222222 244333322
Q ss_pred CCC-Cce-ee---EecCCCCCeEE-EEECC-CCCEEEEEeCCcEEEEEcCCCc-----cceEEecCC-----CCCCeeEE
Q 009763 386 VKS-QAN-VA---KFDGHVGAVTA-ISFSE-NGYYLATAAHDGVKLWDLRKLK-----NFRSFESSD-----SETPTNSV 448 (526)
Q Consensus 386 ~~~-~~~-~~---~~~~~~~~i~~-l~~s~-~~~~l~~~~~d~i~iwd~~~~~-----~~~~~~~~~-----~~~~i~~i 448 (526)
+.. ++. .. .+.....++.. -.|.+ +|.++++...+.|.+.|+.... ....+.... ....+.-+
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 221 111 11 11110011100 03455 8888888888559999964432 222221110 12233449
Q ss_pred EEcCCCCEEEEEe------------CCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC-EEEEEe-CCCcEEE
Q 009763 449 DFDHSGSYLAVAS------------ADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGS-MDRNLRV 514 (526)
Q Consensus 449 ~~s~~~~~l~~~~------------~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~v~i 514 (526)
+++++++.+++.. ..+.++|. .+++.+..+.. ...+..++++||++ .|++.+ .++.|.+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 9999999998853 11555554 55666766654 45789999999999 888766 5788999
Q ss_pred eeCCCCC
Q 009763 515 FGLPGND 521 (526)
Q Consensus 515 w~l~~~~ 521 (526)
+|..+.+
T Consensus 327 iD~~t~k 333 (352)
T TIGR02658 327 FDAETGK 333 (352)
T ss_pred EECcCCe
Confidence 9987764
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=1.5e-10 Score=117.08 Aligned_cols=213 Identities=16% Similarity=0.187 Sum_probs=139.1
Q ss_pred CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEE
Q 009763 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (526)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (526)
..|.++|.... ....+..+...+....|+|+|++|+.++.+ ..|++||+.++....... +...+.+.
T Consensus 170 ~~l~~~d~~g~----~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~------~~~~~~~~ 239 (417)
T TIGR02800 170 YELQVADYDGA----NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS------FPGMNGAP 239 (417)
T ss_pred ceEEEEcCCCC----CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec------CCCCccce
Confidence 35778887543 223344566678899999999999887654 479999999886543321 12345678
Q ss_pred EEccCCcEEEE-EeCCC--cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEE
Q 009763 364 AFHPDGLILGT-GTSEA--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSF 436 (526)
Q Consensus 364 ~~~~~~~~l~~-g~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~ 436 (526)
.|+|||+.|+. .+.++ .|++||+.++... .+..+........|+|+|.+|+..+.. + |.++|+.+++.. .+
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l 317 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RL 317 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee
Confidence 99999986664 44444 5889998876543 343344445677899999988776553 2 888888766543 33
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC---
Q 009763 437 ESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR--- 510 (526)
Q Consensus 437 ~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--- 510 (526)
... ........|+|+|++++.++.+ .+||.++........+ .. ........|+|||++|+..+.++
T Consensus 318 ~~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l---~~---~~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 318 TFR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVL---TD---TGLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred ecC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEc---cC---CCCCCCceECCCCCEEEEEEeCCCcE
Confidence 322 3456778999999999987765 3555554433222222 11 11234568999999888877654
Q ss_pred cEEEeeCCC
Q 009763 511 NLRVFGLPG 519 (526)
Q Consensus 511 ~v~iw~l~~ 519 (526)
.+.+.+..+
T Consensus 390 ~l~~~~~~g 398 (417)
T TIGR02800 390 VLGLVSTDG 398 (417)
T ss_pred EEEEEECCC
Confidence 455556544
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.3e-10 Score=117.47 Aligned_cols=232 Identities=13% Similarity=0.078 Sum_probs=142.5
Q ss_pred cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC-CC--cEEEEeCCCCCceeeeEecccCccceEEEEEecCC
Q 009763 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 322 (526)
Q Consensus 246 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 322 (526)
.+.++|...... +.+..+...+.+..|+|||+.|+..+. ++ .|.+||+.++. ...+..+. +......|+|+|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~~---g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSFP---GINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCCC---CCcCCeeECCCC
Confidence 566677654433 445556778899999999998877654 33 58888987742 12233232 334468999999
Q ss_pred CEEEE-EECCCe--EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CC--cEEEEECCCCceeeEec
Q 009763 323 KYFVT-ASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD 396 (526)
Q Consensus 323 ~~l~s-~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~ 396 (526)
+.|+. .+.+|. |.+||+.+++... +. .+........|+|||+.|+..+. +| .|+++|+.+++... +.
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-----~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt 346 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-IT-----RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT 346 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence 97765 455664 8888988776433 22 12234567899999987766543 33 46777887776433 22
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEE
Q 009763 397 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 469 (526)
Q Consensus 397 ~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 469 (526)
..........|+|+|++|+..+.+ + |.++|+.+++.. .+... .......|+|+|+.|+..+.+ ..+|-+
T Consensus 347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 122223457899999988876553 2 666788776542 22221 122245799999998876654 345544
Q ss_pred ecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 470 ASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
+. +......+... .+.+...+|+|
T Consensus 423 ~~---~G~~~~~l~~~--~g~~~~p~Wsp 446 (448)
T PRK04792 423 SI---DGRFKARLPAG--QGEVKSPAWSP 446 (448)
T ss_pred EC---CCCceEECcCC--CCCcCCCccCC
Confidence 32 22223333322 34566677776
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=2.7e-10 Score=108.43 Aligned_cols=278 Identities=14% Similarity=0.210 Sum_probs=189.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCC---------------cEEEEeCCCCcEEEEecccccc--ee-EEEEecCCCEEEEEe
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDT---------------NAVLFDRPSGQIVTTLSGHSKK--VT-SVKFVTEGDLFLTGS 284 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg---------------~v~vwd~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s 284 (526)
.+.|..+.|+|.+++|.+-...+ .+.+||..+|..+..+.+...+ .+ -+.|+-+..+++=..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 45789999999999999865433 5999999999999999876665 55 678888887755442
Q ss_pred CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC--EEEE-----EECCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 009763 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVT-----ASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357 (526)
Q Consensus 285 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 357 (526)
...++|+++...-.......++ ...|....|+|.++ .|+. .+.++++++|.+..+..+.+.... .
T Consensus 151 -~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-----k 222 (561)
T COG5354 151 -GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-----K 222 (561)
T ss_pred -cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-----e
Confidence 3469999973221111222222 35678888998643 3333 356788999999877666554321 1
Q ss_pred CCeeEEEEccCCcEEEEEe-----------CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC--Cc-EE
Q 009763 358 EGYTSAAFHPDGLILGTGT-----------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH--DG-VK 423 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~-----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--d~-i~ 423 (526)
..-..+.|++.|.++++-. ....++++++...... ......++|...+|.|.++.+++.+. .. +.
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-eeccccccceeeeecccCCceeEEeccccccee
Confidence 1235688888887666521 1246788888743332 22245789999999999888777663 33 99
Q ss_pred EEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
++|++.. +..+ .. ...-+.+.|+|.+++++.++-+ +.+|+. .....+...+.+. ...-+.|+|
T Consensus 302 ~~~lr~N--l~~~-~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~---~~rf~~~~~~~~~----n~s~~~wsp 369 (561)
T COG5354 302 VFDLRGN--LRFY-FP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP---AGRFKVAGAFNGL----NTSYCDWSP 369 (561)
T ss_pred ecccccc--eEEe-cC--CcccccccccCcccEEEEecCCccccceEEecc---CCceEEEEEeecC----CceEeeccC
Confidence 9999876 2222 22 3455678899999999987766 777775 2345555556543 345678999
Q ss_pred CCCEEEEEe------CCCcEEEeeCCCCC
Q 009763 499 DAKYIAVGS------MDRNLRVFGLPGND 521 (526)
Q Consensus 499 ~~~~l~s~~------~dg~v~iw~l~~~~ 521 (526)
|++++.+.. .|..|.||++.+..
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CceEEEecCCCcccccCcceEEEEecCch
Confidence 999988764 37889999997643
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1e-10 Score=112.12 Aligned_cols=286 Identities=14% Similarity=0.213 Sum_probs=183.2
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeC-----------CCcEEEEeCCCCcEEEEecc--ccccee-EEEEecCCCEEEEE
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGV-----------DTNAVLFDRPSGQIVTTLSG--HSKKVT-SVKFVTEGDLFLTG 283 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~-----------dg~v~vwd~~~~~~~~~~~~--h~~~V~-~l~~~~~~~~l~s~ 283 (526)
+++.-..+|.-+.|||..++|+|-+. ...++|||+.+|...+.+.. ....++ -..||-|++++|--
T Consensus 244 ~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 244 IQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred HHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe
Confidence 34444568999999999999998653 25799999999998887765 222333 35899999998877
Q ss_pred eCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCC
Q 009763 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPE 358 (526)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~ 358 (526)
.. .+|.||+...- ..+..-.-.-..|....|+|.++.|+.-... ..+.+-.+.+++.+...... ..
T Consensus 324 ~~-~sisIyEtpsf---~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf-----nV 394 (698)
T KOG2314|consen 324 TG-NSISIYETPSF---MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF-----NV 394 (698)
T ss_pred cc-ceEEEEecCce---eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce-----ee
Confidence 66 56999986552 2222112234568889999998887754321 34666666666665554321 11
Q ss_pred CeeEEEEccCCcEEEEEeC----------CCcEEEEECCCCce-eeEecCCCCCeEEEEECCCCCEEEEEeCCc----EE
Q 009763 359 GYTSAAFHPDGLILGTGTS----------EALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG----VK 423 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~ 423 (526)
.=..+.|..+|.+|+.--. -..+.|+.++.... +.... -...|...+|-|.|..+++-+... +.
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcccccccee
Confidence 2234667778888776321 12345565554432 22222 446788999999999888766542 89
Q ss_pred EEEcCC-CccceEEecCCCCCCeeEEEEcCCCCEEEEEeC-----CeEEEEEecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 424 LWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-----DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 424 iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~-----di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
+|.+.+ ......+...+ ....+.+.|+|.|++++++.- ++.+||.+. .+...+. +......+.+.|.
T Consensus 474 fY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~--a~~k~~~----~~eh~~at~veWD 546 (698)
T KOG2314|consen 474 FYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY--ADLKDTA----SPEHFAATEVEWD 546 (698)
T ss_pred EEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecch--hhhhhcc----CccccccccceEC
Confidence 998873 22222111111 346788999999999988643 267777532 1111111 1113356789999
Q ss_pred CCCCEEEEEeC------CCcEEEeeCCCC
Q 009763 498 PDAKYIAVGSM------DRNLRVFGLPGN 520 (526)
Q Consensus 498 ~~~~~l~s~~~------dg~v~iw~l~~~ 520 (526)
|.|+|+++++. |...++|++.+.
T Consensus 547 PtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 547 PTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99999999876 455678888764
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.6e-10 Score=117.13 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=140.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEE-EEeCCC--cEEEEeC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG 294 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~iwd~ 294 (526)
.+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+ +.+.+| .|.+||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 345678999999999988776543 368999998876543 333334456789999999876 444555 5788888
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCCEEEEEEC-C--CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-D--NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
.++. ...+..+........|+|+|+.++..+. + ..|+++|+.+++....... + .......|+|||+.
T Consensus 275 ~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~----~--~~~~~~~~Spdg~~ 344 (430)
T PRK00178 275 ASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV----G--NYNARPRLSADGKT 344 (430)
T ss_pred CCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC----C--CCccceEECCCCCE
Confidence 7742 2334445555677889999998776654 3 3588888887764332211 1 12345689999998
Q ss_pred EEEEeCC-C--cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCC
Q 009763 372 LGTGTSE-A--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETP 444 (526)
Q Consensus 372 l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~ 444 (526)
++....+ + .|.+||+.+++.. .+.. ........|+|||++++..+.+ + +.++++.. .....+... ...
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g~ 419 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QGE 419 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CCC
Confidence 8877643 3 5888999887643 2321 1222356899999998877654 2 77777753 333333322 344
Q ss_pred eeEEEEcC
Q 009763 445 TNSVDFDH 452 (526)
Q Consensus 445 i~~i~~s~ 452 (526)
+...+|+|
T Consensus 420 ~~~p~ws~ 427 (430)
T PRK00178 420 VREPSWSP 427 (430)
T ss_pred cCCCccCC
Confidence 56666765
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3e-10 Score=114.91 Aligned_cols=213 Identities=12% Similarity=0.123 Sum_probs=135.1
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (526)
.+.++|....+ .+.+..+...+.+..|+|+|+.|+..+.+ ..|.+||+.+++...... . ........
T Consensus 199 ~l~i~d~dG~~----~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~---~---~g~~~~~~ 268 (448)
T PRK04792 199 QLMIADYDGYN----EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS---F---PGINGAPR 268 (448)
T ss_pred EEEEEeCCCCC----ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC---C---CCCcCCee
Confidence 56667765532 22334466788999999999988876543 358999998876533221 1 12234689
Q ss_pred EccCCcEEEE-EeCCCc--EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEe
Q 009763 365 FHPDGLILGT-GTSEAL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 365 ~~~~~~~l~~-g~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~ 437 (526)
|+|||+.|+. .+.+|. |+++|+.+++.. .+..+........|+|+|++|+..+.. + |.++|+.+++... +.
T Consensus 269 wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt 346 (448)
T PRK04792 269 FSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT 346 (448)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence 9999987765 455664 788898876543 444454556788999999988776643 2 7778887766433 22
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC-C--c
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-R--N 511 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~ 511 (526)
.. ........|+|+|++|+..+.+ .+||.++........+. .. .......|+|||++|+..+.+ | .
T Consensus 347 ~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt---~~---~~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 347 FE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT---ST---RLDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred cC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc---CC---CCCCCceECCCCCEEEEEEecCCceE
Confidence 22 2233457899999999887654 56766654333222221 11 111234799999988765543 3 3
Q ss_pred EEEeeCCCC
Q 009763 512 LRVFGLPGN 520 (526)
Q Consensus 512 v~iw~l~~~ 520 (526)
+.++++++.
T Consensus 419 l~~~~~~G~ 427 (448)
T PRK04792 419 LAAVSIDGR 427 (448)
T ss_pred EEEEECCCC
Confidence 667777543
No 263
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=6.6e-11 Score=113.87 Aligned_cols=234 Identities=17% Similarity=0.232 Sum_probs=163.3
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
|.-.-++-|-..++.-..|.+|-+.... |..... . -...-.+++++. +..+++.| ....|+-++++.+ ..+.
T Consensus 97 V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy~~-R-IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqG---rfL~ 169 (703)
T KOG2321|consen 97 VDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHYRT-R-IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQG---RFLN 169 (703)
T ss_pred eeEEEeccchhhheEeecCceeeehhhc-Ceeeee-e-cCcCCccccccCCCccEEEee-cCcceEEEEcccc---cccc
Confidence 3333344444444444556666554322 222111 1 011224556653 44444444 4456888888886 5666
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC-CCCC-----CCeeEEEEccCCcEEEEEeCC
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-DGRP-----EGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~-----~~v~~~~~~~~~~~l~~g~~d 378 (526)
.+....+.++++..++...+|++|+.+|.|.+||.+....+..+..... ..++ ..|+++.|..+|..+++|+.+
T Consensus 170 P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 170 PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred ccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC
Confidence 6666778999999999999999999999999999998877666653211 1222 349999999999999999999
Q ss_pred CcEEEEECCCCceeeEec-CCCCCeEEEEECCC--CCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 379 ALVKIWDVKSQANVAKFD-GHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~--~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
|.|.|||+++.+++..-. +..-+|..+.|.+. +..+++....-++|||-.+++....+.. ...++.+++-|++.
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSG 326 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCc
Confidence 999999999988875543 23458999999876 4455554433499999999999888876 45699999999999
Q ss_pred EEEEEeCC--eEEEEE
Q 009763 456 YLAVASAD--IRVYQV 469 (526)
Q Consensus 456 ~l~~~~~d--i~v~~~ 469 (526)
+++++..+ +..|-+
T Consensus 327 m~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYI 342 (703)
T ss_pred eEEEecCCCcceeEEc
Confidence 99999888 444444
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=5.2e-12 Score=135.46 Aligned_cols=201 Identities=21% Similarity=0.344 Sum_probs=164.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
..+.+-..|.++.-+|...+.+||+.||.|++|....+..+..+. .....|+.+.|+.+|+.+..+..||.+.+|....
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC
Confidence 344556788899999999999999999999999998888777665 2338899999999999999999999999998874
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEE---CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
+.....+.|......+.|-. ..+++++ .++.+.+||..-......+. ..|...++++++.|...+|+
T Consensus 2283 ----k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2283 ----KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred ----cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcCcceEEE
Confidence 67777788999999998864 6677665 46889999965433322221 37788999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
+|+.+|.|++||++..+..+.++. +. ...++++|+..| ++||++.....++++..
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999999999998887777764 34 567889998888 99999998877777654
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.3e-10 Score=111.21 Aligned_cols=238 Identities=13% Similarity=0.130 Sum_probs=140.4
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCE---EEEEeCCC--cEEEEeCCCCCceeeeEecccCccceEEEEEe
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL---FLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~---l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 319 (526)
+.|.+.|...+.. ..+......+.+-.|+|||+. +++...+| .|.+.++.++.. ..+..+ .+......|+
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~---~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILAL---QGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecC---CCCccceEEC
Confidence 4577777765443 334445556778899999974 23444444 477778876432 333333 3345568999
Q ss_pred cCCCEEEEEEC-----CCeEEEEeCCCC--eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEE--ECCC-
Q 009763 320 ATNKYFVTASL-----DNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIW--DVKS- 388 (526)
Q Consensus 320 p~~~~l~s~s~-----dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iw--d~~~- 388 (526)
|||+.|+..+. +..+..|++..+ .....+.. ..........|+|||+.|+..+ .+|...+| ++..
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~----~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN----EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec----CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 99998877653 223444777653 12222221 1112345679999998777654 46655555 4432
Q ss_pred CceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-
Q 009763 389 QANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD- 463 (526)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d- 463 (526)
+.....+..+...+....|+|+|++|+..+.+ + |.+||+.+++... +... ...+....|+|+|++|+....+
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~--~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS--PENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC--CCCccceEECCCCCEEEEEECCC
Confidence 23344444444567789999999988876543 2 9999998876543 2221 2356778999999988865433
Q ss_pred --eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC
Q 009763 464 --IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 464 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
..+|.++........+.. ..+.+...+|+|-
T Consensus 393 g~~~L~~vdl~~g~~~~Lt~-----~~g~~~~p~Ws~~ 425 (428)
T PRK01029 393 NESELYLISLITKKTRKIVI-----GSGEKRFPSWGAF 425 (428)
T ss_pred CCceEEEEECCCCCEEEeec-----CCCcccCceecCC
Confidence 344444332222222221 1344566778774
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=7.5e-12 Score=119.61 Aligned_cols=288 Identities=13% Similarity=0.125 Sum_probs=186.8
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-------CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
..+|...|..+.--.+.+.+++++.|++|++|.+.. ..+..+++.|..+|.++.|..+.++++++ ||-|.+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 456777888877666788899999999999998753 23567888999999999999888877754 789999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEec--CCCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 368 (526)
||.--+.....+.--..| +.+..+...+ +...++.+ +...+|+++|.+.+.....+......+....+.++++.+.
T Consensus 809 WDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred ecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 996554211111111112 2333333333 33444444 6789999999999998888876655566678999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEE-EEcCCCccceEEecCCCCCCee
Q 009763 369 GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL-WDLRKLKNFRSFESSDSETPTN 446 (526)
Q Consensus 369 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i-wd~~~~~~~~~~~~~~~~~~i~ 446 (526)
|+.++.+-.+|.|.+.|.|+|+.+..+..-......++ .|..+.|+....+. +.+ |..-.+......... ..+..
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp--pepah 964 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP--PEPAH 964 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC--Ccchh
Confidence 99999999999999999999998887765544444444 34455666555554 666 765544333322221 11111
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 009763 447 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 514 (526)
-+ -.-|.-|+++... +.||.-.....-...+..+....-.+..++++.-|-+.-+..|+..|.|.+
T Consensus 965 fl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 FL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 00 1124444444333 666642111111122223333233567888888887776777888898875
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.9e-10 Score=112.44 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=134.7
Q ss_pred CCeEEEEecCCCCEE---EEEeCCC--cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC-CC----cEEEEe
Q 009763 224 PGIVSLDIHYSKDVI---ATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK----TVRVWQ 293 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l---~t~~~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg----~i~iwd 293 (526)
..+.+-+|+|||+.+ ++...+| .|.+.++.+++.... ....+......|+|||+.|+..+. +| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 345677899999742 2444443 577778887654332 223444567899999988776553 23 344467
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEE--eCCC-CeEEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFY--DLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iw--d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
+..+..........++.......+|+|+|+.|+..+ .+|...+| ++.. +.....+. .....+....|+|||
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----~~~~~~~~p~wSPDG 338 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----KKYRNSSCPAWSPDG 338 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-----cCCCCccceeECCCC
Confidence 654211122222222333446789999999877665 46654444 4432 22233332 112355678999999
Q ss_pred cEEEEEeCC---CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCccceEEecCCCC
Q 009763 370 LILGTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 370 ~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~ 442 (526)
+.|+....+ ..|.+||+.+++... +......+....|+|||++|+....+ . |.++|+..++....... .
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~---~ 414 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG---S 414 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC---C
Confidence 988776543 369999998886543 33233456789999999988754432 2 88999987765443322 3
Q ss_pred CCeeEEEEcCCC
Q 009763 443 TPTNSVDFDHSG 454 (526)
Q Consensus 443 ~~i~~i~~s~~~ 454 (526)
..+...+|+|..
T Consensus 415 g~~~~p~Ws~~~ 426 (428)
T PRK01029 415 GEKRFPSWGAFP 426 (428)
T ss_pred CcccCceecCCC
Confidence 445677787743
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=1.8e-10 Score=102.25 Aligned_cols=234 Identities=17% Similarity=0.162 Sum_probs=162.1
Q ss_pred CCCCeEEEEecC---CCC-EEEEEeCCCcEEEEeCCCCcEEEEecccc------cceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 222 SKPGIVSLDIHY---SKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHS------KKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 222 ~~~~I~~~~~s~---~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~------~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
-.+.+..+.|.. +|. .++-+..+|.|.+|..........+.+-. ....++.|++.+..++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345677777764 455 56677789999999876544444443321 12457789998999999999999996
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCeeEEEEcc-C
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP-D 368 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~ 368 (526)
-+... ...+.++..+.|.-+++...|+. +.+.+.+|+.|+.+..||++..+ .+..- ...|...|.++.-+| .
T Consensus 148 v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 148 VYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSSPPK 222 (339)
T ss_pred Eecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecCCCC
Confidence 55443 33455667889999999999975 45789999999999999999333 22221 336678899998887 7
Q ss_pred CcEEEEEeCCCcEEEEECCC-CceeeEecCCCCCeEEEEECCC--CCEEEEEeCCcEEEEEcCCCccce--EEec-CCCC
Q 009763 369 GLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNFR--SFES-SDSE 442 (526)
Q Consensus 369 ~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~i~iwd~~~~~~~~--~~~~-~~~~ 442 (526)
+.++++|+.|-.|++||.|+ ++++..-. -.+.|..+.++|. +..|+++-.+|.+|-+......-. .+.. ..+.
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc
Confidence 89999999999999999994 56665443 3478999999995 445666666778888776543321 1111 1123
Q ss_pred CCeeEEEEcCCCCEEEEEe
Q 009763 443 TPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~ 461 (526)
+-...-.|+....+|++++
T Consensus 302 Sl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ceeeccccccccceeeeee
Confidence 4444555555556677754
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=4.6e-11 Score=122.66 Aligned_cols=195 Identities=18% Similarity=0.273 Sum_probs=155.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccccee----EEEEecCCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVT----SVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~----~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
.|....+......++.++.+..+.+||...+.....+........ -+-++++.-++++|+.-+.|.+|+....+
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-- 166 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-- 166 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--
Confidence 344455666778889999999999999988777666653322211 12234556689999999999999987432
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
... .+.+|.+.|..+.|+-+|.++++.|.|.++++|++++.+..... .-+|...+..++|+|+ .+++++.|.+
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHsaRvw~~~~~~n--~i~t~gedct 239 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT----GFGHSARVWACCFLPN--RIITVGEDCT 239 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc----cccccceeEEEEeccc--eeEEeccceE
Confidence 222 57899999999999999999999999999999999998776522 3388899999999998 8999999999
Q ss_pred EEEEECCCCceeeEecCCC-CCeEEEEECCCCCEEEEEeCCc-EEEEEcCC
Q 009763 381 VKIWDVKSQANVAKFDGHV-GAVTAISFSENGYYLATAAHDG-VKLWDLRK 429 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 429 (526)
.++|+.. ++.+..+.+|. ..|..++..++..++++++.|+ +++||+..
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999764 55555777775 4799999999999999999998 99999753
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=4.5e-11 Score=106.72 Aligned_cols=241 Identities=20% Similarity=0.313 Sum_probs=162.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEecccc------------cceeEEEEecCCC--EEEE
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHS------------KKVTSVKFVTEGD--LFLT 282 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~-----~~~~~~~h~------------~~V~~l~~~~~~~--~l~s 282 (526)
...-|+++.|...|.++++|...|.|.+|...... ....+++|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999765432 233455654 4588899986543 4677
Q ss_pred EeCCCcEEEEeCCCCC-------------------c---------------ee-----eeEec-ccCccceEEEEEecCC
Q 009763 283 GSADKTVRVWQGSEDG-------------------N---------------YD-----CKHTL-KDHTAEVQAVTVHATN 322 (526)
Q Consensus 283 ~s~dg~i~iwd~~~~~-------------------~---------------~~-----~~~~~-~~h~~~v~~l~~~p~~ 322 (526)
.+.|.+|++|.+.... . .. +.+.+ ..|...|+++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999854320 0 00 00111 3577788999999888
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEEee---cCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCcee----eE
Q 009763 323 KYFVTASLDNTWCFYDLSSGICLTQVS---DAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANV----AK 394 (526)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~----~~ 394 (526)
..++++ .|-.|.+|+++-......+. +........-|++..||| ..+.+.-.+..|.|++-|+|..... ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 877765 56789999987543322222 111111224578899999 4567777788999999999853211 11
Q ss_pred ------------ecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCc-cceEEecCCC----------C---CCeeEE
Q 009763 395 ------------FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK-NFRSFESSDS----------E---TPTNSV 448 (526)
Q Consensus 395 ------------~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~-~~~~~~~~~~----------~---~~i~~i 448 (526)
+.+-...|..+.|+++|+++++-+.-.|+|||.+..+ ++.++..+.. . ..-..+
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1122356888999999999998877779999998754 4555543311 1 122457
Q ss_pred EEcCCCCEEEEEeCC
Q 009763 449 DFDHSGSYLAVASAD 463 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d 463 (526)
.|+.+.+.+.+|+..
T Consensus 344 sfSgd~~~v~sgsy~ 358 (460)
T COG5170 344 SFSGDDKHVLSGSYS 358 (460)
T ss_pred EecCCcccccccccc
Confidence 778777777777654
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.32 E-value=1.1e-08 Score=96.83 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=153.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecc---c--------ccceeEEE-Eec-CCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG---H--------SKKVTSVK-FVT-EGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 233 ~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~---h--------~~~V~~l~-~~~-~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
.||+.++.. ..|.|.+||..+..+...--+ . ..+..-+. |++ +|++++..|. |...|.+...+
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~-- 351 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG-- 351 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC--
Confidence 466666553 467899999876543221101 0 01111122 444 7888888886 77888776553
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCC-eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
-.+. -+|.+.|.-..+..+++-++.|..|| .+-++|.++++....... -+.|.++..+++|+.++++...
T Consensus 352 -~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~------lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 352 -YSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD------LGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred -eeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC------ccceEEEEEcCCCcEEEEEcCc
Confidence 2222 35777899888888888999999999 899999999876554432 3579999999999999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-----EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
..+.++|+.+++....-+...+-|+.+.|+|++++++-+--+| |++||+..++....-.. ...-.+-+|+|+
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d 499 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPD 499 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCCC
Confidence 9999999999986655555677899999999999999886653 99999998776554433 233345678888
Q ss_pred CCEEEEEe
Q 009763 454 GSYLAVAS 461 (526)
Q Consensus 454 ~~~l~~~~ 461 (526)
+++|..-+
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 88877544
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=7.4e-09 Score=112.27 Aligned_cols=291 Identities=14% Similarity=0.211 Sum_probs=188.1
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEE----eCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC-
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLF----DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE- 296 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vw----d~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~- 296 (526)
..+.|.++.+-++...++.+..+|.|.++ +..+.. +...-.-...|.+++||||+.+|+..+.+|++.+.+-.-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 35689999999999999999999999999 554332 222223456799999999999999999999988764110
Q ss_pred -----------CCceeee---------------------------------EecccCccceEEEEEecCCCEEEEEEC--
Q 009763 297 -----------DGNYDCK---------------------------------HTLKDHTAEVQAVTVHATNKYFVTASL-- 330 (526)
Q Consensus 297 -----------~~~~~~~---------------------------------~~~~~h~~~v~~l~~~p~~~~l~s~s~-- 330 (526)
-+..+.+ ..+. +...-..|+|-.||.||++.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0000000 0111 3335567889999999998875
Q ss_pred -C---CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC---CCcEEEEECCCCceeeEec----CCC
Q 009763 331 -D---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAKFD----GHV 399 (526)
Q Consensus 331 -d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~----~~~ 399 (526)
. ..+++|+-+ |.....-. .-.+--.+++|-|.|++||+... ...|.+|. |+|-....|. ...
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 2 479999976 54433332 11123457899999999998765 34566666 4454333332 345
Q ss_pred CCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecC-CCCCCeeEEEEcCCC-CEEEEEeC-C-eEEEEEe--ccc
Q 009763 400 GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSG-SYLAVASA-D-IRVYQVA--SVK 473 (526)
Q Consensus 400 ~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~-~~~~~i~~i~~s~~~-~~l~~~~~-d-i~v~~~~--~~~ 473 (526)
..|..+.|++++..|+....+.|.+|-..+..-..+.... .....+..+.|+|.. ..|.+.+. + +..+++. ...
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 6899999999999999988888999988776533222221 112344559999854 33444444 2 4333332 111
Q ss_pred Cc------c----------eeeeeec-----------CCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 474 AD------W----------NCIKTFP-----------DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 474 ~~------~----------~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.. . -.+..|. ...-...|.+++|++++..+++-..||.|.+|..+...
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 10 0 0111111 00125679999999998889999999999999976543
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.1e-09 Score=105.54 Aligned_cols=228 Identities=16% Similarity=0.256 Sum_probs=156.2
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC--EEEE-----EeCCCcEEEEeCCCCCc
Q 009763 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLT-----GSADKTVRVWQGSEDGN 299 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s-----~s~dg~i~iwd~~~~~~ 299 (526)
++..|+.|..+.|- -..+.+.+|+..+.+.+.. .-|...|+.+.++|.+. .+++ .|.-+.|+||.....+.
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 68888887664432 2356899999877443322 23677899999998643 3433 34556899998764322
Q ss_pred eeeeEecccCccceEEEEEecCCCE-EEE--EECC---------CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKY-FVT--ASLD---------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~-l~s--~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
...+..-.-....=..+.|++-|.- |+. ..-| .++++.++........+. ..++|.++.|+|
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~------k~GPVhdv~W~~ 280 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL------KEGPVHDVTWSP 280 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC------CCCCceEEEECC
Confidence 1221111112233346778876653 222 2223 368888888555554443 246899999999
Q ss_pred CCcEEEE--EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCccceEEecCCC
Q 009763 368 DGLILGT--GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDS 441 (526)
Q Consensus 368 ~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~ 441 (526)
++.-+++ |..-..+.|||++ +.++..+ ..++-+++-|+|.|++++.++-+ | |-|||..+.+.+..+...
T Consensus 281 s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-- 355 (566)
T KOG2315|consen 281 SGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-- 355 (566)
T ss_pred CCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--
Confidence 9976655 5556789999986 4555555 45677899999999999998877 4 999999998888877664
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--------eEEEEE
Q 009763 442 ETPTNSVDFDHSGSYLAVASAD--------IRVYQV 469 (526)
Q Consensus 442 ~~~i~~i~~s~~~~~l~~~~~d--------i~v~~~ 469 (526)
..+-+.|+|||+++++++.. ++||++
T Consensus 356 --~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 --NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred --CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 45678999999999998754 899998
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.29 E-value=1.6e-09 Score=103.16 Aligned_cols=272 Identities=16% Similarity=0.220 Sum_probs=179.6
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCC---------------c
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK---------------T 288 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg---------------~ 288 (526)
-++..++|||.|.+|++.... .|.+|....+..+..+. | ..|..+.|+|.+++|.+-+..+ .
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred cchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 367889999999999988755 48899988776655555 3 4599999999999999865533 4
Q ss_pred EEEEeCCCCCceeeeEecccCccc--eE-EEEEecCCCEEEEEECCCeEEEEeCCCCeEE-EEeecCCCCCCCCCeeEEE
Q 009763 289 VRVWQGSEDGNYDCKHTLKDHTAE--VQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~ 364 (526)
+.+||..++ ..+..+.+...+ .+ -+.|+-+.+|++-. ....+.|+++ ++... ..+. .-....+....
T Consensus 110 ~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~----~lr~~gi~dFs 180 (561)
T COG5354 110 VFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFK----NLRPVGILDFS 180 (561)
T ss_pred eeEEeccCc---eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchh----hccccceeeEE
Confidence 999999887 667777665555 55 67888888876655 3457899997 33221 1111 11235788889
Q ss_pred EccCC--cEEEE-----EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe------C------CcEEEE
Q 009763 365 FHPDG--LILGT-----GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA------H------DGVKLW 425 (526)
Q Consensus 365 ~~~~~--~~l~~-----g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~------~------d~i~iw 425 (526)
|+|.+ ..|+. ++..+.+++|.+..++.+.+-.-..-.=..+.|.+.|.+|++-. . ..+.|+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 99953 33443 45678999999987665544332222335688999888776531 1 128888
Q ss_pred EcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEe-CC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC
Q 009763 426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS-AD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 501 (526)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~-~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 501 (526)
+++........ ...++|...+|.|.++.+++.+ .. +.+++++ .+....+. .+.=+.+.|+|.++
T Consensus 261 ~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr-----~Nl~~~~P----e~~rNT~~fsp~~r 328 (561)
T COG5354 261 RITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR-----GNLRFYFP----EQKRNTIFFSPHER 328 (561)
T ss_pred eecccccceec---cccccceeeeecccCCceeEEecccccceeecccc-----cceEEecC----CcccccccccCccc
Confidence 88743332222 2267999999999988877765 33 7777762 22222222 23335566777777
Q ss_pred EEEEEeCC---CcEEEeeCCC
Q 009763 502 YIAVGSMD---RNLRVFGLPG 519 (526)
Q Consensus 502 ~l~s~~~d---g~v~iw~l~~ 519 (526)
+++.++-| |.+-+|+..+
T Consensus 329 ~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 329 YILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred EEEEecCCccccceEEeccCC
Confidence 77765544 5677776654
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.4e-11 Score=117.69 Aligned_cols=205 Identities=24% Similarity=0.398 Sum_probs=149.3
Q ss_pred EEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC----ceeeeEecccCccceEEEEEecCCCEEEEEECCCe
Q 009763 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 333 (526)
Q Consensus 258 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~ 333 (526)
+..+.||...|..+.-..+.+-+++++.|++|++|.+...+ ...|..++..|+.+|.++.|..+.+++++ .||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 45677999999998877778889999999999999987543 23578888999999999999988888876 4889
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCCCcEEEEECCCCceeeEec-----CCCCCeEEEEE
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQANVAKFD-----GHVGAVTAISF 407 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~ 407 (526)
|.+||.--+..+.++......+....|.|+. +-+..+++.| +...+|+++|.|..+....++ +.+..+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999988887776655332222222233322 1144455554 778999999999987766664 34566899999
Q ss_pred CCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEE-EE
Q 009763 408 SENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV-YQ 468 (526)
Q Consensus 408 s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v-~~ 468 (526)
.+.|++++++-.+| |.+.|.|+++.+..+... ......++ .|+.+.|+....+ +.| |.
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 99999999998888 999999999988776553 22222222 3556666655555 555 54
No 276
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.27 E-value=3.1e-12 Score=86.70 Aligned_cols=42 Identities=43% Similarity=0.724 Sum_probs=33.4
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPVTG 42 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~ 42 (526)
+.|+||+.++++||.+.+|||+|||..|++||+.++ +||++|
T Consensus 12 ~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 12 LKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred cCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 579999999999999999999999999999995554 699977
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.26 E-value=1.1e-08 Score=110.88 Aligned_cols=284 Identities=12% Similarity=0.186 Sum_probs=181.8
Q ss_pred CeEEEEecCCCCEE--EEEeCCC--cEEEEeCCCC---cEEEEec-----ccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 225 GIVSLDIHYSKDVI--ATGGVDT--NAVLFDRPSG---QIVTTLS-----GHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 225 ~I~~~~~s~~~~~l--~t~~~dg--~v~vwd~~~~---~~~~~~~-----~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
.+...+|.+..+.+ +++.... .|.+...... +.+..+. ...+.|.++.|.++...++.+..+|.|.++
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 56677777765533 3332222 2333332222 2333333 235679999999999999999999999999
Q ss_pred ----eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCC---------------C--------CeEE
Q 009763 293 ----QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---------------S--------GICL 345 (526)
Q Consensus 293 ----d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---------------~--------~~~~ 345 (526)
+... ...+++. .-...|.+++|+||+..++.++.++++.+.+-. . |+..
T Consensus 103 ~~~~~~~~-~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 103 REDPDPDE-DEIEIVG---SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EccCCCCC-ceeEEEE---EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 5444 2223333 345789999999999999999999998876421 0 1111
Q ss_pred EEeecCCCC-------------------CCCCCeeEEEEccCCcEEEEEeC---C---CcEEEEECCCCceeeEecCCCC
Q 009763 346 TQVSDAGTD-------------------GRPEGYTSAAFHPDGLILGTGTS---E---ALVKIWDVKSQANVAKFDGHVG 400 (526)
Q Consensus 346 ~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~g~~---d---g~i~iwd~~~~~~~~~~~~~~~ 400 (526)
.++.+.... .....-..++|-.||.++|+.+. . ..++||+-. |.....-+.-.+
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g 257 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG 257 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC
Confidence 111100000 02235567899999999999875 2 478999854 665555444444
Q ss_pred CeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCccceEEecC--CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEeccc
Q 009763 401 AVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESS--DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVK 473 (526)
Q Consensus 401 ~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~--~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~ 473 (526)
--.+++|.|.|++|++.... . |.+|.- +|-....|... .....+..+.|++++..|++...+ +.+|....
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N-- 334 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN-- 334 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeC--
Confidence 45678999999999988652 2 778874 34333344433 235679999999999999998887 99998732
Q ss_pred CcceeeeeecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEeeC
Q 009763 474 ADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~l 517 (526)
-.|-....+.-. ....+..+.|+|. ...|...+.+|.+..+++
T Consensus 335 YHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 335 YHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 234444444322 1334555999994 455777777677765443
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=4.3e-08 Score=93.86 Aligned_cols=234 Identities=9% Similarity=0.054 Sum_probs=148.5
Q ss_pred ecCCCCEEEEEeC----------CCcEEEEeCCCCcEEEEecccc-------cceeEEEEecCCCEEEEEe-C-CCcEEE
Q 009763 231 IHYSKDVIATGGV----------DTNAVLFDRPSGQIVTTLSGHS-------KKVTSVKFVTEGDLFLTGS-A-DKTVRV 291 (526)
Q Consensus 231 ~s~~~~~l~t~~~----------dg~v~vwd~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~l~s~s-~-dg~i~i 291 (526)
++|+++.|+++.. +..|.+||..+++.+..+.... .....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999997776654 7899999999999998887422 2234788999999988766 3 789999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC-----CCCCeeEEEEc
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG-----RPEGYTSAAFH 366 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~ 366 (526)
.|+.+. +.+..+.- .+...-...+++... +-+.||......+.+..........-... ...+ .|.
T Consensus 133 vD~~~~---kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~ 202 (352)
T TIGR02658 133 VDLEGK---AFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYS 202 (352)
T ss_pred EECCCC---cEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceE
Confidence 999886 44444432 111111222222222 22345555544443221111111000000 0112 345
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCC-----ceeeEecC-------CCCCeEEEEECCCCCEEEEEe---------C-Cc-E
Q 009763 367 P-DGLILGTGTSEALVKIWDVKSQ-----ANVAKFDG-------HVGAVTAISFSENGYYLATAA---------H-DG-V 422 (526)
Q Consensus 367 ~-~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~---------~-d~-i 422 (526)
+ +|.++++... |.|.+.|+... .....+.. ..+.+.-++++++++.+++.. . .+ |
T Consensus 203 ~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 203 NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence 5 8888888776 99999996443 22222211 233445599999999888843 1 13 9
Q ss_pred EEEEcCCCccceEEecCCCCCCeeEEEEcCCCC-EEEEEeCC---eEEEEEecccCcceeeeee
Q 009763 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD---IRVYQVASVKADWNCIKTF 482 (526)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d---i~v~~~~~~~~~~~~~~~~ 482 (526)
.++|..+.+.+..+.. ...+..++++|+++ +|++.+.. +.|+|. ...+.+..+
T Consensus 282 ~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~----~t~k~i~~i 338 (352)
T TIGR02658 282 FVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA----ETGKELSSV 338 (352)
T ss_pred EEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC----cCCeEEeee
Confidence 9999999999998887 46899999999999 77766532 899987 455555555
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=1.5e-10 Score=114.48 Aligned_cols=287 Identities=15% Similarity=0.211 Sum_probs=192.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEecccc--cceeEEEEecCC--CEEEEEeCCCcEEEEeCCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHS--KKVTSVKFVTEG--DLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h~--~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~ 297 (526)
.+++.++.++|.|+-+|.++.-|. .+.|+.. +...+-+. |. -.|-.+.|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 457889999999999999987764 4456544 33333332 22 336678888743 34444444456678998765
Q ss_pred CceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 375 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 375 (526)
........+.+|...|+.+.|+|+. ..+++++.|..+..||+++........ .........++|+. ++..+++
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~----~~w~s~asqVkwnyk~p~vlas- 176 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST----SSWRSAASQVKWNYKDPNVLAS- 176 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee----ecccccCceeeecccCcchhhh-
Confidence 4445556678999999999999865 578999999999999999865433221 12234567889988 5555554
Q ss_pred eCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 376 TSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 376 ~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
+....|.+||.+.+ .++..+++|...|+.+.|+.- ...+.+++.|+ |++||..+.......... ...++..-.+-|
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~P 255 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLP 255 (1081)
T ss_pred ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceeccccc
Confidence 45678999999876 577888999889999999763 34566777777 999999765443322221 156777777777
Q ss_pred CCCEEEE----EeCCeEEEEEecccC------cceeeeeecCCCCCcceEEEEEcCCC----------CEEEEEeCCCcE
Q 009763 453 SGSYLAV----ASADIRVYQVASVKA------DWNCIKTFPDLSGTGKATCVKFGPDA----------KYIAVGSMDRNL 512 (526)
Q Consensus 453 ~~~~l~~----~~~di~v~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~v 512 (526)
-|.-.+. |+.-+.+++.+.... ....+..|.+| ...|..+.|-..+ -.|++-+.|..+
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 5543332 222133333322211 24567778776 6677666664322 259999999999
Q ss_pred EEeeCCC
Q 009763 513 RVFGLPG 519 (526)
Q Consensus 513 ~iw~l~~ 519 (526)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9999865
No 280
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1.4e-11 Score=123.83 Aligned_cols=266 Identities=19% Similarity=0.299 Sum_probs=188.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCC--cEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~ 295 (526)
..+.|....+|++|+-+.+.|++|+..|.|++|++.+|.......+|..+|+.+.=+.+|..+++.+.-. -..+|+..
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 3455778999999999999999999999999999999999999999999999999999999766655432 46799886
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
... ...++|. .-.++.|+.....-+.|+......+||+.++..+.++... ..+....-++..|+|+..+++
T Consensus 1176 s~~--~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1176 STG--GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD-TVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred ccc--Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc-chhhhhhccccccCCCcceEe--
Confidence 532 4444443 3467888766555556666678899999999877764322 112223347889999887776
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
.|| .+||+|..+.++.|...... -.-.|+|+|..++..+ -|||+|+.+.++..... .-..+.|+..|.
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~L----dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSL----DQCAVTFNSTGD 1314 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHHHHHhcCccc----cceEEEeccCcc
Confidence 355 47999998888888654422 2345999999888775 58999999988877654 345688998888
Q ss_pred EEEEEe------CCeEEEEEec---------ccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 456 YLAVAS------ADIRVYQVAS---------VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 456 ~l~~~~------~di~v~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
.++..- .++.--+++. ...++..+.++.+ ...+..++-++...+|.+--
T Consensus 1315 VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v---~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1315 VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV---DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec---ccchhhhhcCCccceEEEEe
Confidence 877654 1122222211 0133444555544 44667777777777776643
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.7e-10 Score=124.11 Aligned_cols=194 Identities=20% Similarity=0.348 Sum_probs=146.5
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 009763 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 264 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~ 343 (526)
+-..|.++.-+|...+.+||+.||.|++|....+....+.++. +. ..|+.+.|+.+|+.+..+..||.+.+|... .+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 4556788888898889999999999999998877544444433 33 889999999999999999999999999987 33
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe---CCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeC
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 419 (526)
...... .|......+.|-. ..+++++ .++.+.+||..-. ..-..-..|.+.++++++.|....|++|+.
T Consensus 2284 ~~~s~q-----chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2284 PYTSWQ-----CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred ceeccc-----cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 333322 5556666777664 5566653 4678999997532 111122679999999999999999999999
Q ss_pred Cc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 420 DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 420 d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
+| |++||++..+.++.++. ++ ...++++|+.. ++||.+. ....+.++.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s----~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLS----EFGLLHTFP 2407 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcc----ccchhhcCc
Confidence 99 99999998888777654 44 56788888776 9999983 344555544
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=5.9e-08 Score=107.36 Aligned_cols=239 Identities=11% Similarity=0.180 Sum_probs=154.1
Q ss_pred EEEEecCC-CCEEEEEeCCCcEEEEeCCCCcEEEEecc--c------------ccceeEEEEecCCCEEEEEe-CCCcEE
Q 009763 227 VSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSG--H------------SKKVTSVKFVTEGDLFLTGS-ADKTVR 290 (526)
Q Consensus 227 ~~~~~s~~-~~~l~t~~~dg~v~vwd~~~~~~~~~~~~--h------------~~~V~~l~~~~~~~~l~s~s-~dg~i~ 290 (526)
..+++++. +.++++-..++.|.+||.. +..+..+.+ . -.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35677764 5677777788899999976 454444332 1 12357899999887665554 457899
Q ss_pred EEeCCCCCceeeeEecccC-----------------ccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCC
Q 009763 291 VWQGSEDGNYDCKHTLKDH-----------------TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAG 352 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (526)
++|..++ .+.++.+- -...+.++++| ++..+++.+.++.|++||..++.... +...+
T Consensus 650 ~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 650 EIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred EEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence 9998663 22222110 12346899999 55666777788999999998875432 21110
Q ss_pred C----C------CCCCCeeEEEEccCCc-EEEEEeCCCcEEEEECCCCceeeEe-------------cCC--------CC
Q 009763 353 T----D------GRPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKF-------------DGH--------VG 400 (526)
Q Consensus 353 ~----~------~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~-------------~~~--------~~ 400 (526)
. . ..-.....++++|++. ++++-..++.|++||+.++...... ... -.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 0 0 0113456799999987 5555566789999999876532111 000 11
Q ss_pred CeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC-----------CCCCeeEEEEcCCCCEEEEEeCC--eEE
Q 009763 401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD--IRV 466 (526)
Q Consensus 401 ~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d--i~v 466 (526)
...+++|+++|.++++-+.++ |++||..++.......... .-.....++++++|+++++-+.+ |++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 346899999998777777776 9999998765543221110 01256789999999977776655 889
Q ss_pred EEEec
Q 009763 467 YQVAS 471 (526)
Q Consensus 467 ~~~~~ 471 (526)
|++..
T Consensus 885 id~~~ 889 (1057)
T PLN02919 885 LDLNK 889 (1057)
T ss_pred EECCC
Confidence 98754
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=5.2e-09 Score=91.93 Aligned_cols=234 Identities=17% Similarity=0.138 Sum_probs=155.2
Q ss_pred EEEecC-----CCCEEEEEeCCCcEEEEeCCCCcE-EEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCce
Q 009763 228 SLDIHY-----SKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 228 ~~~~s~-----~~~~l~t~~~dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
.+.|-| .-.+||.||..|...+|...+.+. ......|...|+-+.=.-+ .--+..++.|.++++.+++.+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 455655 345899999999999999886543 3334444443332211111 223677788999999988765321
Q ss_pred eeeEecccCcc--ceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 301 DCKHTLKDHTA--EVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 301 ~~~~~~~~h~~--~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
. ..|.. .+.+++++++++++++.+....|..|.+.... .+..+... .....-.+..|+.....+|++..
T Consensus 152 ~-----~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 152 F-----AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA---PTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred c-----eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---ccCCCceeeeeccCcceEEEEec
Confidence 1 12333 37899999999999999999999999886543 23332222 22234567889999999999999
Q ss_pred CCcEEEEECCCCceeeE-----ecCCCCCeEEEEECCCCC--EEEEEeCCc-EEEEEcCCCccceEEecCCCC------C
Q 009763 378 EALVKIWDVKSQANVAK-----FDGHVGAVTAISFSENGY--YLATAAHDG-VKLWDLRKLKNFRSFESSDSE------T 443 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~-----~~~~~~~i~~l~~s~~~~--~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~------~ 443 (526)
||++.|||+|....... -..|.+.+..+.|++.|. +|+..-.-+ +.+.|+|+++....+...... .
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq 303 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQ 303 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccc
Confidence 99999999997543222 234889999999998653 333322224 999999998877666554321 2
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 444 PTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
.+....|+.++.-+.+.+.+ +.=|++
T Consensus 304 ~ifgt~f~~~n~s~~v~~e~~~ae~ni 330 (344)
T KOG4532|consen 304 HIFGTNFNNENESNDVKNELQGAEYNI 330 (344)
T ss_pred ccccccccCCCcccccccchhhheeec
Confidence 36666777777666666655 544544
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=7.1e-08 Score=96.08 Aligned_cols=266 Identities=17% Similarity=0.159 Sum_probs=156.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
.++.+++++.+|.|.-+|..+|+.+..+............ ++..++.++.+|.+..+|..++ +.+...... ..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG---~~~W~~~~~-~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDG---KELWRAKLS-SEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCC---cEeeeeccC-cee
Confidence 3678888888999999999999988776644332222222 5677888899999999998876 333332211 222
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceee
Q 009763 314 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA 393 (526)
Q Consensus 314 ~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 393 (526)
.+.-.. .+..++.++.+|.+..||.++++.+................+..+. + ..++.+..+|.+..+|.++++.+.
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEee
Confidence 211111 3557777888999999999999987776532110000000111111 2 467788888999999999998765
Q ss_pred EecCCC--C--Ce---EEEEECC--CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 394 KFDGHV--G--AV---TAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 394 ~~~~~~--~--~i---~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
...... + .+ ..+.-+| .+..+++++.++ +..||..+++......... ..... ..+..+++++.+
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCce--EeCCEEEEECCC
Confidence 432110 0 00 0010011 244666666666 9999999988765554221 11222 245667777666
Q ss_pred --eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 464 --IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 464 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+..++.......|+ ..... .....+... .+..|++++.+|.|++||..+++
T Consensus 289 G~l~~~d~~tG~~~W~----~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 289 GVVVALDRRSGSELWK----NDELK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CeEEEEECCCCcEEEc----ccccc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 55555432222222 21110 111122222 45688899999999999987654
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=7.4e-10 Score=109.30 Aligned_cols=235 Identities=18% Similarity=0.188 Sum_probs=166.8
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC------------ceeeeEecccCccceEEEEEecCCCEEEEEECCC
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG------------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN 332 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 332 (526)
.....|+.|+....++++|+.||.++|..+.+.. +...-+++.||...|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4457899999999999999999999999876532 1233456789999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCcee-eEecCCCCCeEEEEECCCC
Q 009763 333 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-AKFDGHVGAVTAISFSENG 411 (526)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~ 411 (526)
.|.+|-+-.+.....+.. ....+.|.+++|+.||..++....||.|.+=.+...+.- ..+++ .....+.|++|.
T Consensus 94 lIiVWmlykgsW~EEMiN---nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMIN---NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhh---CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH
Confidence 999999988876554432 234567999999999999999999999987766533221 11222 234578899998
Q ss_pred CEEEEEeCCc-EEEEEcCCC-----ccceEEec----CCCCCCeeEEEEc--------CCCCEEEEEeCCeEEEEEeccc
Q 009763 412 YYLATAAHDG-VKLWDLRKL-----KNFRSFES----SDSETPTNSVDFD--------HSGSYLAVASADIRVYQVASVK 473 (526)
Q Consensus 412 ~~l~~~~~d~-i~iwd~~~~-----~~~~~~~~----~~~~~~i~~i~~s--------~~~~~l~~~~~di~v~~~~~~~ 473 (526)
..++.+-.+| +.+||.... +.-..... ......+..+.|. |+...|+++..++++-.+...+
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 8877777777 999997532 11110110 1112335556663 5778899988886665554433
Q ss_pred CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC
Q 009763 474 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 509 (526)
Q Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 509 (526)
.....+... .-.+....|+++|.+|+++|.|
T Consensus 249 D~~Pvv~dt-----gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 249 DPEPVVVDT-----GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCCeEEec-----ccEeecceecCCCcEEEEccCc
Confidence 322222221 3468899999999999999865
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.17 E-value=7.9e-08 Score=106.38 Aligned_cols=242 Identities=14% Similarity=0.149 Sum_probs=154.3
Q ss_pred EEEEecC-CCEEEEEeCCCcEEEEeCCCCCceeeeEeccc--------------CccceEEEEEecCCCEEEEEEC-CCe
Q 009763 270 SVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--------------HTAEVQAVTVHATNKYFVTASL-DNT 333 (526)
Q Consensus 270 ~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------------h~~~v~~l~~~p~~~~l~s~s~-dg~ 333 (526)
.++++++ +.++++-+.++.|++||.... .+..+.+ +-.....+++.++++.|+++.. ++.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~----~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN----FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC----EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 5778764 667777778889999997652 2222211 1123578999998887666554 578
Q ss_pred EEEEeCCCCeEEEEeecCCCCC------------CCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecC---
Q 009763 334 WCFYDLSSGICLTQVSDAGTDG------------RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDG--- 397 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--- 397 (526)
|+++|+.++.. .++...+..+ .-.....++++| ++.++++...++.|++||..++... .+.+
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 99999987653 3332111100 012346799999 6677777778899999998776432 2211
Q ss_pred ------------CCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEe-----------cCC--------CCCC
Q 009763 398 ------------HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFE-----------SSD--------SETP 444 (526)
Q Consensus 398 ------------~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~-----------~~~--------~~~~ 444 (526)
.-.....++|+|+|.+|+++..+ + |++||+.++....... ... ....
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 11245679999999866665544 4 9999998754321110 000 0113
Q ss_pred eeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCC------------CCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 445 TNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL------------SGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
...++++++|.++++-..+ |++|+... .... .+.+. ........++++++|+++++-+.++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~t----g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPAT----KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCC----CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 4689999999877766655 88888632 1111 11110 0123578899999999888888999
Q ss_pred cEEEeeCCCCCC
Q 009763 511 NLRVFGLPGNDA 522 (526)
Q Consensus 511 ~v~iw~l~~~~~ 522 (526)
.|++|++..+..
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999987653
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=6e-09 Score=91.53 Aligned_cols=193 Identities=9% Similarity=0.020 Sum_probs=138.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEE
Q 009763 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV 316 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 316 (526)
-+..++.|.++++.++..+.....+....-.+.++.++++++++++.+....|..|.+...+.+-........++.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 35556778888888776443322222111238899999999999999999999999998865543332334445556788
Q ss_pred EEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC--cEEEEEeCCCcEEEEECCCCceeeE
Q 009763 317 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LILGTGTSEALVKIWDVKSQANVAK 394 (526)
Q Consensus 317 ~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~ 394 (526)
.|+.....++++..||++.|||++.............+.|.+.+..+.|++.| .+|+..-.-+.+.+.|+|++.....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 99999999999999999999999987655554444455688999999999855 3555555567899999999876655
Q ss_pred ecC-------CC-CCeEEEEECCCCCEEEEEeCCcEEEEEcCC
Q 009763 395 FDG-------HV-GAVTAISFSENGYYLATAAHDGVKLWDLRK 429 (526)
Q Consensus 395 ~~~-------~~-~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~ 429 (526)
+.. |. ..|..-.|+.++.-+.+.+.+.+.=|++.+
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccchhhheeeccc
Confidence 422 22 237778888877777777666566666543
No 288
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=2.3e-09 Score=97.33 Aligned_cols=253 Identities=12% Similarity=0.204 Sum_probs=171.6
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
..+..++||...|++...-|...-+++.+.|.+++||--.+.+++.+.. ......+++++.+++....|++|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-hhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 3456788999999999888877789999999999999655443322211 122457899999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEE
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 415 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 415 (526)
-+.+...-....+... ...|...+..+-|+....++++.+.|..+.---.+.+..+..+.- ....+++.|.-. +..
T Consensus 94 efs~sedfnkm~~~r~-~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKD-YLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEhhhhhhhcchhhh-hhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 8876543222222111 236778899999998888999999888776555555544332211 011112222111 334
Q ss_pred EEeCCc-EEEEEc--CCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcc
Q 009763 416 TAAHDG-VKLWDL--RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK 490 (526)
Q Consensus 416 ~~~~d~-i~iwd~--~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~ 490 (526)
.|...+ |.+-.+ .....+.++..+ ...+.++.|++....|++|..+ +.+|++.... .....+.+ |...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~~el~g--h~~k 242 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTAYELQG--HNDK 242 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCc---ceeeeecc--chhh
Confidence 444444 443333 334445555554 7899999999999999999998 9999983221 12223333 3778
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 491 ATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 491 v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
|..+..-+--+.|.+++.||.|-+|+.+..
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 888888888889999999999999998754
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.12 E-value=8.6e-10 Score=102.25 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=136.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE----EEEecccccceeEEEEecCCCEEEE---EeCCCcEEEEeCCCCC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI----VTTLSGHSKKVTSVKFVTEGDLFLT---GSADKTVRVWQGSEDG 298 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s---~s~dg~i~iwd~~~~~ 298 (526)
...+..++++++||++..+....++++..... ...+.. ...-+++.|..+...... ++....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34455678888999998888877776654332 222221 222344555544444333 34455566666554
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.+...+-||-+.++.++|+||+++++++..|..|++-.......+..+- .+|...|..++..++. .|++|+.|
T Consensus 142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc----lGH~eFVS~isl~~~~-~LlS~sGD 214 (390)
T KOG3914|consen 142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC----LGHKEFVSTISLTDNY-LLLSGSGD 214 (390)
T ss_pred --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc----cccHhheeeeeeccCc-eeeecCCC
Confidence 2333446899999999999999999999999999998887766666663 3788899999998754 48999999
Q ss_pred CcEEEEECCCCceeeEecCCC--CCeE----------EEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCe
Q 009763 379 ALVKIWDVKSQANVAKFDGHV--GAVT----------AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~--~~i~----------~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 445 (526)
++|++||+++++.+.++.-.. ..|. .+.|......++..+++. +.++.....+....+... ..++
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~~~~v~l~~--~~qv 292 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALPTSLVPLVS--EVQV 292 (390)
T ss_pred CcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCCceeEEEEe--cccc
Confidence 999999999999887664211 1111 112222223333334333 777776665544433222 3446
Q ss_pred eEEEEcC
Q 009763 446 NSVDFDH 452 (526)
Q Consensus 446 ~~i~~s~ 452 (526)
.++++-.
T Consensus 293 ~d~a~~e 299 (390)
T KOG3914|consen 293 WDLALLE 299 (390)
T ss_pred eeeeeee
Confidence 6666543
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=9.6e-08 Score=85.49 Aligned_cols=202 Identities=13% Similarity=0.215 Sum_probs=125.0
Q ss_pred EEEecCCCEEEEEECCCeEEEEeCCCCe--EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceee
Q 009763 316 VTVHATNKYFVTASLDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA 393 (526)
Q Consensus 316 l~~~p~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 393 (526)
++.+.+|+.|+.. .|..|.|=..++.- .+..... .....-.-+.++|+||+.+||.+...|+|++||+.. ..+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqV--pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQV--PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEec--CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeE
Confidence 4556677766654 45566655444321 1122211 112234578899999999999999999999999864 3343
Q ss_pred EecC-------CCCCeEEEEECCCC------CEEEEEeCCc-EEEEEcC-----CCccceEEecCCC-CCCeeEEEEcCC
Q 009763 394 KFDG-------HVGAVTAISFSENG------YYLATAAHDG-VKLWDLR-----KLKNFRSFESSDS-ETPTNSVDFDHS 453 (526)
Q Consensus 394 ~~~~-------~~~~i~~l~~s~~~------~~l~~~~~d~-i~iwd~~-----~~~~~~~~~~~~~-~~~i~~i~~s~~ 453 (526)
.+.. -...|..+.|.+.. ..|++-..+| ++-|-+. ..+....+....+ ...|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 4432 23467777776532 2344444444 5555432 2333444544332 568999999999
Q ss_pred CCEEEEEeCC-------------eEEEEEecccCcceeeeee----------------------c-CCCCCcceEEEEEc
Q 009763 454 GSYLAVASAD-------------IRVYQVASVKADWNCIKTF----------------------P-DLSGTGKATCVKFG 497 (526)
Q Consensus 454 ~~~l~~~~~d-------------i~v~~~~~~~~~~~~~~~~----------------------~-~~~~~~~v~~~~~s 497 (526)
.++|++|+.. +..|.+-....-+..+... . .......|..|..|
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 9999887643 5566553222111111110 0 01125578899999
Q ss_pred CCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 498 PDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 498 ~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|||..||+...+|.|.+|++++-.
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcch
Confidence 999999999999999999998754
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=9.8e-09 Score=102.55 Aligned_cols=288 Identities=13% Similarity=0.068 Sum_probs=188.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCC------------CEEEEEeCCCcEEEE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG------------DLFLTGSADKTVRVW 292 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~------------~~l~s~s~dg~i~iw 292 (526)
.-.+++|+|.| +||.|+ ...|.|.|..+-+.+..+..|...|+.+.|.|-. -+|+++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678899855 677766 4578899999999999999999999999998621 157778888999999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEec---CC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHA---TN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP- 367 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 367 (526)
|+... ..+..+..|..++..++|-+ +. ..|+.-....++.+|+..+|....... .......|+.+.|
T Consensus 95 d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-----ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 95 DFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-----YSHEILSCFRVDPF 166 (1062)
T ss_pred Eehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-----cCCcceeeeeeCCC
Confidence 99876 45566778889999999966 33 467777778899999999999887764 2235677899999
Q ss_pred CCcEEEEEeCCCcEEEEECCC-------CceeeEecCCCC------------C-------------eEEEEECCCC-CEE
Q 009763 368 DGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVG------------A-------------VTAISFSENG-YYL 414 (526)
Q Consensus 368 ~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~------------~-------------i~~l~~s~~~-~~l 414 (526)
|.+.+..-+..|.+.+-+.-. ++..+.-..|.. . .-.++|+|.- +.+
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 777787777888887776532 122221111111 0 1135677753 445
Q ss_pred EEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCccee------------ee
Q 009763 415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC------------IK 480 (526)
Q Consensus 415 ~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~------------~~ 480 (526)
+..-..++.++|+.-..++..+.......++..+--+|....|++...| +.+|.-......+.. ..
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~ 326 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVH 326 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceE
Confidence 5555556999999988888888776433344444444556788888887 777764321111110 00
Q ss_pred eecCCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEeeCCCCCCC
Q 009763 481 TFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFGLPGNDAP 523 (526)
Q Consensus 481 ~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~l~~~~~~ 523 (526)
.+... ..-.+......|. ...++.--.+|.+.+|.+.++..+
T Consensus 327 ~vr~m-~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 327 VVRPM-EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEeec-hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 00000 0111222223343 344555556888999999876544
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=9.5e-08 Score=95.18 Aligned_cols=262 Identities=16% Similarity=0.130 Sum_probs=152.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
++..+++++.+|.+..+|..+|+.+....... .+.+.-.. .+..++.++.+|.+..||..++ +.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG---~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATG---ERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCC---ceeeEEccCCCce
Confidence 46678888889999999999999887655322 22211111 3456777888999999999876 3333332211111
Q ss_pred -----EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCeeEEEEcc--CCcEEEEEeCCCcEEEE
Q 009763 314 -----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIW 384 (526)
Q Consensus 314 -----~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~g~~dg~i~iw 384 (526)
..... .+..++.+..+|.+..+|.++|+.+.........+.. .....+.-+| .+..+++++.+|.++.|
T Consensus 179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 11112 1346778888999999999999876654321110100 0000111111 34567778889999999
Q ss_pred ECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
|..+++.+...... ....... .+..+++++.++ +..+|..+++.+....... .....+... .+..+++++.+
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCC
Confidence 99999877665421 1222222 455677777777 9999999887765442211 111222222 36688888877
Q ss_pred eEEEEEecccCcceeeeeecCCCCCcce-EEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 464 IRVYQVASVKADWNCIKTFPDLSGTGKA-TCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 464 i~v~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
..++-++. .+.+.+..+..+ ...+ .+..+. ++ .|+.++.||.|..|
T Consensus 330 G~l~~~d~--~tG~~~~~~~~~--~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSR--EDGSFVARLKTD--GSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEEC--CCCCEEEEEEcC--CCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 44444432 334455454432 2122 222332 33 58888899999876
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=9.8e-07 Score=82.22 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=145.0
Q ss_pred EEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEe-cCCCEEEEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 228 SLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-TEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 228 ~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
+..|.+ ++.++++-...+.|..|+..++.... +.... ...+.+. +++. |+.+..+ .+.++|..++ ....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCC-cEEEEee
Confidence 567887 67777887789999999998775543 22122 6777777 5654 5555554 4566688774 2233333
Q ss_pred cc--c-CccceEEEEEecCCCEEEEEECC--------CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE-
Q 009763 306 LK--D-HTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG- 373 (526)
Q Consensus 306 ~~--~-h~~~v~~l~~~p~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 373 (526)
.. . .....+.+++.|+|++.++.... |.+..++.. ++....... -...+.++|+|+++.|+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~------~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG------LGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE------ESSEEEEEEETTSSEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC------cccccceEECCcchheee
Confidence 31 2 34678899999999988776654 568888877 554433322 13578999999998766
Q ss_pred EEeCCCcEEEEECCCCce-------eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCe
Q 009763 374 TGTSEALVKIWDVKSQAN-------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 445 (526)
+-+..+.|..|++..... ...+....+..-.+++..+|++.++....+ |.++|.. ++.+..+... ...+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~ 227 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRP 227 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCE
Confidence 556678899999863321 222232333478899999998777766555 9999988 8888888776 3589
Q ss_pred eEEEE-cCCCCEEEEEe
Q 009763 446 NSVDF-DHSGSYLAVAS 461 (526)
Q Consensus 446 ~~i~~-s~~~~~l~~~~ 461 (526)
++++| .++...|++.+
T Consensus 228 t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEESTTSSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 99999 46766666554
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.05 E-value=1.2e-06 Score=81.59 Aligned_cols=223 Identities=16% Similarity=0.146 Sum_probs=138.7
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEe-cCCCEEEEEECCCeEEEEeCCCCeEEEE
Q 009763 270 SVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGICLTQ 347 (526)
Q Consensus 270 ~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (526)
++.|.+ ++.++++-...+.|..|+..++ ....+... . ...+.+. ++ ..++.+..++ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~~~~~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEVIDLP-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEEESS-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEEEecC-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEE
Confidence 578888 6777777777899999998774 22222211 2 7778888 55 5555555544 45559999866555
Q ss_pred eecCCCCCCCCCeeEEEEccCCcEEEEEeCC--------CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC
Q 009763 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 419 (526)
.............+.+++.++|++.++.... |.|..++.. ++...... .-...+.++|+|+++.|+++..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 4432111134678899999999977776543 557777776 44333333 3456789999999998876655
Q ss_pred C-c-EEEEEcCCCcc----ceEE-ecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceE
Q 009763 420 D-G-VKLWDLRKLKN----FRSF-ESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKAT 492 (526)
Q Consensus 420 d-~-i~iwd~~~~~~----~~~~-~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 492 (526)
. + |..|++..... ...+ .........-.++++.+|++.++.....+|+.++. ....+..+... ...++
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p---~G~~~~~i~~p--~~~~t 228 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP---DGKLLREIELP--VPRPT 228 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET---TSCEEEEEE-S--SSSEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC---CccEEEEEcCC--CCCEE
Confidence 4 4 88888864322 1222 22211234788999999998877665544444432 34455555443 34789
Q ss_pred EEEE-cCCCCEEEEEe
Q 009763 493 CVKF-GPDAKYIAVGS 507 (526)
Q Consensus 493 ~~~~-s~~~~~l~s~~ 507 (526)
+++| .++.+.|+..+
T Consensus 229 ~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 229 NCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEESTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEe
Confidence 9999 46766666554
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=6.8e-09 Score=90.83 Aligned_cols=195 Identities=16% Similarity=0.283 Sum_probs=117.2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE------------EEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI------------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
|+.+.++. ...|+++..++.+..+....+.+ ...+..|+++-.+-..+-.++.+++++.||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 45555542 34566666666665554433222 222222333222222233456799999999999998
Q ss_pred CCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEEC-----CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 294 GSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 294 ~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
.+.. +...+.+. .|.+ -.+.++...++++.++.. -+..+.|+++..+....-. . . ...|.+++-||
T Consensus 118 ~~~~--~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---~-~-~~~v~~l~~hp 189 (319)
T KOG4714|consen 118 TDKD--LALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---K-A-LDAVTALCSHP 189 (319)
T ss_pred chHH--Hhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccc---c-c-cccchhhhCCc
Confidence 7542 12111111 1211 112222234555554322 2345566655433222211 1 1 13499999999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCc-eeeEecCCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCC
Q 009763 368 -DGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRK 429 (526)
Q Consensus 368 -~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~ 429 (526)
...++++|+.||.+.+||.+... +...+..|..+|+.+-|+| ++..|++++.|| +.-||..+
T Consensus 190 ~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 190 AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 56788899999999999999874 3445678999999999999 688999999999 99999764
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=3.2e-07 Score=87.06 Aligned_cols=215 Identities=14% Similarity=0.162 Sum_probs=145.4
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCceeeeEeccc--------CccceEEEE-Eec-CCCEEEEEECCCeEEEEeCCCCe
Q 009763 274 VTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--------HTAEVQAVT-VHA-TNKYFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 274 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------h~~~v~~l~-~~p-~~~~l~s~s~dg~i~iwd~~~~~ 343 (526)
+.||+.++. +.-|.|.+||..+...-+.-..+.- ...+..-+. |++ +|++++..|. |...+.+...+-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 346776655 3457899999877432111111000 001111121 333 6888888876 677777776665
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC-cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG- 421 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~- 421 (526)
.+.. ++...|.-..+..++.-++.|..|| .+-|||.++++. ..+...-+.|.++..+++|++++++.+..
T Consensus 353 ~iqv-------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 353 SIQV-------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred eEEc-------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence 5433 3445688888888888899999999 899999987764 45566778999999999999999988877
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEEecccCcceeeeeecCCCCCcceEEEE
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQVASVKADWNCIKTFPDLSGTGKATCVK 495 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (526)
+.++|+.+++....-+.. ..-|+.+.|+|+++++|.+--+ |++|++.. ......-.. .+.=.+-+
T Consensus 425 l~vididngnv~~idkS~--~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~----~Kiy~vTT~---ta~DfsPa 495 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSE--YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG----GKIYDVTTP---TAYDFSPA 495 (668)
T ss_pred EEEEEecCCCeeEecccc--cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC----CeEEEecCC---cccccCcc
Confidence 999999998764433222 5679999999999999988654 88998732 222211111 22334567
Q ss_pred EcCCCCEEEEEe
Q 009763 496 FGPDAKYIAVGS 507 (526)
Q Consensus 496 ~s~~~~~l~s~~ 507 (526)
|.||+++|.--+
T Consensus 496 FD~d~ryLYfLs 507 (668)
T COG4946 496 FDPDGRYLYFLS 507 (668)
T ss_pred cCCCCcEEEEEe
Confidence 889999887654
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=1.5e-07 Score=94.00 Aligned_cols=191 Identities=10% Similarity=0.035 Sum_probs=123.4
Q ss_pred CeEEEEecCCCCE-EEEEeC---CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEE-EeCC--CcEEEEeCCCC
Q 009763 225 GIVSLDIHYSKDV-IATGGV---DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSAD--KTVRVWQGSED 297 (526)
Q Consensus 225 ~I~~~~~s~~~~~-l~t~~~---dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~d--g~i~iwd~~~~ 297 (526)
.+..-.|+|+|+. ++..+. +..|+++|+.+++...... ..+......|+|||+.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999984 654433 3568999998876654433 4455667889999986654 4334 45777787664
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEEC-CC--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
. ...+..+........|+|+|+.|+..+. .+ .|.++|+.++........ +. ....|+|||+.|+.
T Consensus 268 ~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g~----~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 268 T----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----GK----NNSSVSTYKNYIVY 335 (419)
T ss_pred c----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----CC----cCceECCCCCEEEE
Confidence 2 2233333333345679999987776654 23 688889988765433321 11 12489999998877
Q ss_pred EeCC---------CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc----EEEEEcCCC
Q 009763 375 GTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKL 430 (526)
Q Consensus 375 g~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~ 430 (526)
.... ..|.+.|+.++... .+... .......|+|||+.|+..+..+ +.++++...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 6543 36888898877643 33322 2334588999999887765442 677777543
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=5.8e-07 Score=89.80 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=119.8
Q ss_pred ceEEEEEecCCCE-EEEEEC---CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCC--CcEEEE
Q 009763 312 EVQAVTVHATNKY-FVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE--ALVKIW 384 (526)
Q Consensus 312 ~v~~l~~~p~~~~-l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~d--g~i~iw 384 (526)
.+....|+|+|+. ++..+. +..|.++|+.+++....... ........|+|||+.++.. +.+ ..|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS------QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC------CCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 6788999999984 554443 35699999988876544321 2345567899999766544 333 468888
Q ss_pred ECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
|+.++.. ..+..+........|+|||+.|+-.++. + |.++|+.+++..+..... .. ...|+|+|++|+..
T Consensus 263 dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g---~~--~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 263 DTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG---KN--NSSVSTYKNYIVYS 336 (419)
T ss_pred ECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC---Cc--CceECCCCCEEEEE
Confidence 9877764 3444333334456899999888777654 2 888899876653322211 11 24899999998876
Q ss_pred eCC---------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC---cEEEeeCCCC
Q 009763 461 SAD---------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR---NLRVFGLPGN 520 (526)
Q Consensus 461 ~~d---------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~v~iw~l~~~ 520 (526)
... ..||.++........+.. . +......|+|||+.|+....++ .+.+.+++++
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTA---N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCC---C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 542 355555433333332222 1 1223578999999877665432 3666676654
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.2e-08 Score=95.85 Aligned_cols=244 Identities=16% Similarity=0.170 Sum_probs=170.5
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--C-cEEEEecccccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--G-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSED 297 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~--~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~ 297 (526)
|++.|+.+... ..+++.+++.||.++.|.-.. | +.+..+..|.+.|.+++.+-++-++.|++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 56677777544 468999999999999997543 2 345566788999999999999999999887 999999998764
Q ss_pred CceeeeEecccCccceEEEEEecC-CC-EEE-EEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHAT-NK-YFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~-~~-~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.....+ .+....+.+..+ .++. .. .++ +.-.+|.+.++|-....+..... ..-|..+|.++.+.+-+..+++
T Consensus 87 Dminmi-KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---kklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 87 DMINMI-KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---KKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred chhhhc-ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---cccccCceEEEEeeccccceee
Confidence 221111 112222322222 1221 11 233 33457899999977655333332 2356789999999999999999
Q ss_pred EeCCCcEEEEECCC------Cceee---------EecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 375 GTSEALVKIWDVKS------QANVA---------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 375 g~~dg~i~iwd~~~------~~~~~---------~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
....|.|..|.... .+... .+........++.|+|+|..+.+-+.|. |+++++++++.++.+..
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 99999999998762 11111 1222345678999999999999998887 99999998876554432
Q ss_pred CCC-------------------------------CCCeeEEEEcCCCCEEEEEeCC-eEEEEEec
Q 009763 439 SDS-------------------------------ETPTNSVDFDHSGSYLAVASAD-IRVYQVAS 471 (526)
Q Consensus 439 ~~~-------------------------------~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~ 471 (526)
... ...-..+.|+.+|++|+.|+-- ++|.++..
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t 306 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT 306 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence 110 1245678899999999999876 88888854
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.5e-08 Score=90.92 Aligned_cols=250 Identities=18% Similarity=0.308 Sum_probs=163.4
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC--ceeeeEecccCc------------cceEEEEEecCC--CEEEEE
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATN--KYFVTA 328 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~p~~--~~l~s~ 328 (526)
...|+++.|...|.+|++|...|.|.+|.-.... .++....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754421 133344455654 347788886543 467788
Q ss_pred ECCCeEEEEeCCCCeEEEE------------------------------------eec--CCCCCCCCCeeEEEEccCCc
Q 009763 329 SLDNTWCFYDLSSGICLTQ------------------------------------VSD--AGTDGRPEGYTSAAFHPDGL 370 (526)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~------------------------------------~~~--~~~~~~~~~v~~~~~~~~~~ 370 (526)
+.|.+|++|.+........ ... .....|+..+.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998754311000 000 01135666788999999888
Q ss_pred EEEEEeCCCcEEEEECCCCce---eeEecCCC-----CCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccc----e--
Q 009763 371 ILGTGTSEALVKIWDVKSQAN---VAKFDGHV-----GAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNF----R-- 434 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~----~-- 434 (526)
.++++ .|-.|.+|++.-... +..++.|. .-|++..|+|. ...+.-++..| |++-|+|..... .
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 88776 467899998864322 22334443 35888999995 33333344444 999999853211 0
Q ss_pred --EEecCC------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCC----------CCcce---E
Q 009763 435 --SFESSD------SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS----------GTGKA---T 492 (526)
Q Consensus 435 --~~~~~~------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~----------~~~~v---~ 492 (526)
.+.... ....|..+.|+++|+|+++-+.. ++||+....+. ++.+.+.|. ....| .
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~---pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN---PIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC---CceeechHHHHHHHHHhhhhccceeeeE
Confidence 111111 13468899999999999998887 99999865433 444443221 12223 3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 493 CVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 493 ~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.+.||.|.+.+.+|+.....-+|-..
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEecCCcccccccccccceeeeccc
Confidence 46788888899999988888887743
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=8.5e-07 Score=89.12 Aligned_cols=292 Identities=14% Similarity=0.167 Sum_probs=187.2
Q ss_pred cCCCCCeEEEEecCCC------------CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEec---CC-CEEEEE
Q 009763 220 KTSKPGIVSLDIHYSK------------DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT---EG-DLFLTG 283 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~------------~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~ 283 (526)
..|++.|+.+.|.|-. -+||++...|.|.+||...+..+..+..|..++..++|-+ +. .+|+.-
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 3466789999998621 2678888899999999999988999999999999999986 23 467777
Q ss_pred eCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCC-------CeEEEEeecCCC--
Q 009763 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSS-------GICLTQVSDAGT-- 353 (526)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~~~~-- 353 (526)
....++.+|+..++ +.......-.....|+.+.| +.+.+...+..|.+.+-+.-. ++..+.......
T Consensus 132 h~ss~lvLwntdtG---~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTG---EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred cCCcEEEEEEccCC---ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 77789999998887 34444443345566777777 445555555555555554311 111111100000
Q ss_pred ------------------------------------------------------------CCCCCCeeEEEEccCC--cE
Q 009763 354 ------------------------------------------------------------DGRPEGYTSAAFHPDG--LI 371 (526)
Q Consensus 354 ------------------------------------------------------------~~~~~~v~~~~~~~~~--~~ 371 (526)
.-..+.+.-+.+-|++ ..
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 0001233455666644 57
Q ss_pred EEEEeCCCcEEEEECCC----------------CceeeEe---c------------------------------------
Q 009763 372 LGTGTSEALVKIWDVKS----------------QANVAKF---D------------------------------------ 396 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~~----------------~~~~~~~---~------------------------------------ 396 (526)
|+++..||.+.+|-.+. +..+..+ +
T Consensus 289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 88999999999996543 1111100 0
Q ss_pred ------------------------------------CCCCCeEEEEECC-----------CC-------CEEEEEeCCc-
Q 009763 397 ------------------------------------GHVGAVTAISFSE-----------NG-------YYLATAAHDG- 421 (526)
Q Consensus 397 ------------------------------------~~~~~i~~l~~s~-----------~~-------~~l~~~~~d~- 421 (526)
+|....++....| .| .+++.|...|
T Consensus 369 ~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 369 HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT 448 (1062)
T ss_pred CcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence 1222333333222 11 2567788888
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----------eEEEEEecccCcceeeeeecCCCCCcc
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----------IRVYQVASVKADWNCIKTFPDLSGTGK 490 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----------i~v~~~~~~~~~~~~~~~~~~~~~~~~ 490 (526)
|.++|+.++.....+..| ...|.++.|-....++-.+.+. +.|-++.++. ......+.. ....+
T Consensus 449 V~vvdvst~~v~~~fsvh--t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGl--sk~fR~l~~-~desp 523 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVH--TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGL--SKRFRGLQK-PDESP 523 (1062)
T ss_pred EEEEEecchhhhhhhccc--ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccc--ccccccCCC-CCcCc
Confidence 999999999888888776 6789999998777766555432 3333442211 111121122 24678
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 491 ATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 491 v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
|..+..|..|+||+..-.|.-+-+||+..
T Consensus 524 I~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 524 IRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ceeeeecccCceEEEEecccchHHHhhcc
Confidence 99999999999999999999999999854
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.9e-08 Score=99.05 Aligned_cols=183 Identities=16% Similarity=0.215 Sum_probs=134.5
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 345 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~ 345 (526)
..++|+++ .+++|+.|+.+|.|++++.... . .+...|... ...|.++++|+.||+|.|..+-+.+..
T Consensus 40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hHHHHHHh--hcceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 44666666 4678999999999999987653 2 333345443 558999999999999999999888877
Q ss_pred EEeecCCCCCCCCCeeEEEEccC-----CcEEEEEeCCCcEEEEECCCC--ceeeEecCCCCCeEEEEECCCCCEEEEEe
Q 009763 346 TQVSDAGTDGRPEGYTSAAFHPD-----GLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
.++.. ..++.+++++|+ .+.+++|+.-| +.++.-+-. +....+....++|.++.| .|++++-++
T Consensus 107 ~~~df------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 107 TQYDF------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred eeEec------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 76642 358999999997 47899999888 777654321 111134556789999999 688999999
Q ss_pred CCcEEEEEcCCCccceEEecCCC----CCCeeEEEEcCCCCEEEEEeCCeEEEEEe
Q 009763 419 HDGVKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASADIRVYQVA 470 (526)
Q Consensus 419 ~d~i~iwd~~~~~~~~~~~~~~~----~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 470 (526)
+.||++||..+.+.+..+..... ......+.|.++.++++--++.|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 99999999998877666654421 22345678887666655545559998886
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.96 E-value=2.6e-06 Score=78.89 Aligned_cols=232 Identities=17% Similarity=0.238 Sum_probs=162.5
Q ss_pred EEEEecC-CCCEEEEEeCCCc-EEEEeCCCCcEEEEecccccce--eEEEEecCCCEEEEEeC-----CCcEEEEeCCCC
Q 009763 227 VSLDIHY-SKDVIATGGVDTN-AVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGSA-----DKTVRVWQGSED 297 (526)
Q Consensus 227 ~~~~~s~-~~~~l~t~~~dg~-v~vwd~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~ 297 (526)
..++.+| ....++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence 3677888 4567777776665 6789999998887765433322 13679999999998643 58899999983
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEE------------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (526)
.+..+..+..|.-.-..+.+.|+|..|+++- .+-.+.+.|..+|+.+.+.... ...|...
T Consensus 87 -~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~~lS 164 (305)
T PF07433_consen 87 -GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLHQLS 164 (305)
T ss_pred -CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-ccccccc
Confidence 3577888888877788899999998877762 2345777788888888776532 2346678
Q ss_pred eeEEEEccCCcEEEEEeCCCc-------EEEEECCCCceeeEec-------CCCCCeEEEEECCCCCEEEEEeCCc--EE
Q 009763 360 YTSAAFHPDGLILGTGTSEAL-------VKIWDVKSQANVAKFD-------GHVGAVTAISFSENGYYLATAAHDG--VK 423 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~-------i~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~~~~l~~~~~d~--i~ 423 (526)
+..+++.++|..++..-..|. |.+++ .+..+..+. .-.+.+-+|++++++.++++++-.+ +.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 999999999987777655442 33333 233232222 2346789999999999988887765 99
Q ss_pred EEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEE
Q 009763 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (526)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 469 (526)
+||..++..+...... .+..++-.+++ ++++.+ ...++.+
T Consensus 243 ~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~~~~ 282 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQLIRL 282 (305)
T ss_pred EEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccEEEc
Confidence 9999999888766553 45666666666 444443 4445554
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.9e-08 Score=101.30 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=132.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.+.|+|++++ +++++.|+.+|.|++++... .. .+...|+.. .-+|.++++|+.||+|.|..+-+. +.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~---~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD---DE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCC---cc
Confidence 4567888887 78999999999999999763 33 444445543 558999999999999999988775 33
Q ss_pred eEecccCccceEEEEEecC-----CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 303 KHTLKDHTAEVQAVTVHAT-----NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
..++ ....++.+++++|+ .+.+++||.-| +.++.-+--....... .....++|.++.|. |+++|-++.
T Consensus 106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~---l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV---LSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee---eecCccceEEEEec--CcEEEEecC
Confidence 3333 34578999999997 56799999988 7776533211111111 11334789999996 678998877
Q ss_pred CCcEEEEECCCCceeeEecCCCCC------eEEEEECCCCCEEEEEeCCcEEEEEcCC
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGA------VTAISFSENGYYLATAAHDGVKLWDLRK 429 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~------i~~l~~s~~~~~l~~~~~d~i~iwd~~~ 429 (526)
+| |++||+.+++.+..+...... ...+.|.+ ...|+.|-.+.|+|..+++
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEec
Confidence 66 899999998887777543333 24567764 4567788888898888873
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.94 E-value=9.1e-09 Score=104.60 Aligned_cols=266 Identities=16% Similarity=0.194 Sum_probs=164.5
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccc-ceeEEEEecCCCEEEEEeCC-------CcEEEEeC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSAD-------KTVRVWQG 294 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~d-------g~i~iwd~ 294 (526)
-+.|.++.|.+...++..|+..|.+.-+-....+....+.-|.- .|..+.-...+ +++.+.. +-+-++|.
T Consensus 54 ~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~--i~~ls~~alr~~~r~gl~~~~~ 131 (1118)
T KOG1275|consen 54 YGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESG--IFTLSKTALRATTRQGLPVFDF 131 (1118)
T ss_pred cccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhh--heeeeHHHhhhhhccCceeecc
Confidence 34688888888777888888777766554443333333333321 11111111111 2222211 11223332
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.... ...-...+. -++..++.|+....+..+|+++.+........ ...+.- +-.+++++.+
T Consensus 132 ~~~s----------~~~M~~~~~--~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-----a~~v~i--mR~Nnr~lf~ 192 (1118)
T KOG1275|consen 132 TCPS----------MTKMASSLH--MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVS-----ASGVTI--MRYNNRNLFC 192 (1118)
T ss_pred cCCC----------HHHHHHHhc--cCCcceeecchhhheeeeecccceeeeeeecc-----CCceEE--EEecCcEEEe
Confidence 2110 001111111 14567888888889999999998877666421 112333 3346789999
Q ss_pred EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC---------Cc-EEEEEcCCCccceEEecCCCCCC
Q 009763 375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH---------DG-VKLWDLRKLKNFRSFESSDSETP 444 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---------d~-i~iwd~~~~~~~~~~~~~~~~~~ 444 (526)
|...|+|.+-|.++.+.++++..|.+.|..+.. .|+.|++++. |. |+|||+|+.+.+..+..+ ..
T Consensus 193 G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~ 267 (1118)
T KOG1275|consen 193 GDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YG 267 (1118)
T ss_pred ecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cC
Confidence 999999999999999999999999999987766 6888888764 33 899999998887766654 23
Q ss_pred eeEEEEcCCC-CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 445 TNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 445 i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
..-+.|.|.- ..+++++.. ..+.+........ ...+..+.....+..++++++|+.|+.|..+|.|.+|.
T Consensus 268 P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 268 PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred chhhhhcccccceEEEEecccceeeccccccCCCc--cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3557777753 334444433 5555521111111 12222222245599999999999999999999999998
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=1.4e-08 Score=94.33 Aligned_cols=164 Identities=19% Similarity=0.255 Sum_probs=111.3
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc-eeeeEecccCccceEEEEEecCCCEEEEEEC---CCeEEEEeCCCCe
Q 009763 268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGI 343 (526)
Q Consensus 268 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~ 343 (526)
...+..++++++|+++..+....++++..... .++..... -...-+.+.|..+......+.. ...+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455567788888888777777777655432 22222222 2223344555444555444444 4445555554443
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe-cCCCCCeEEEEECCCCCEEEEEeCCc-
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG- 421 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~- 421 (526)
....+ +|-..++.++|+||+.+|+++..|..|++-.......+..| -||...|..++.-++ +.|++++.|+
T Consensus 144 ~~~~l------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CEPIL------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred cchhh------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence 33333 77889999999999999999999999999877655555554 569999999998755 5578888887
Q ss_pred EEEEEcCCCccceEEecC
Q 009763 422 VKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~ 439 (526)
|++||+++++.+..+...
T Consensus 217 lr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDLS 234 (390)
T ss_pred EEEEecccCCcccccchh
Confidence 999999999988776654
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.1e-07 Score=91.83 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=132.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccc-eEEEEEecCCCEEEEEECCCe-----EEEEeCCCC---
Q 009763 272 KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHATNKYFVTASLDNT-----WCFYDLSSG--- 342 (526)
Q Consensus 272 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~s~s~dg~-----i~iwd~~~~--- 342 (526)
+|++.+..++.|+.+|.|.+++-.- +.++.++.+... |..+....+.++|++.+.|+. +++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4577888999999999999887432 555777777766 555544434468888887654 899998643
Q ss_pred ---eEEE--EeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC---C-CceeeEecCCCCCeEEEEECCCCCE
Q 009763 343 ---ICLT--QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK---S-QANVAKFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 343 ---~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~---~-~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (526)
.++. .+.....+..+.++.+++++.+-+.+++|..+|.|..+.-. . +....-......+|+.+.+..++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 2331 12221122346789999999999999999999999988421 1 1112122234679999999988876
Q ss_pred -EEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEe
Q 009763 414 -LATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA 470 (526)
Q Consensus 414 -l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~ 470 (526)
+++++...|.+|.+.... ........++.+..|..|++...-+++++.. +.+|+.+
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred eEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 666666779999998433 2222233347788999998876645555555 9999863
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=92.86 Aligned_cols=176 Identities=15% Similarity=0.240 Sum_probs=126.9
Q ss_pred EEEEecCC--CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC--Cceee
Q 009763 227 VSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED--GNYDC 302 (526)
Q Consensus 227 ~~~~~s~~--~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~ 302 (526)
..++|+-+ +-. ++.|.+-.|-+-|+.+|.. ..|. ..+.|.++.|...+++++.|+.+|.|..+|++.. ++..+
T Consensus 215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 34466543 333 4445567788889887643 3333 5677999999998999999999999999999764 22345
Q ss_pred eEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeE---EEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 303 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGIC---LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
...+. |.+.|+++.... ++++|++.+.+|+|++||++.-++ +.++..+. ......-+.+++....+++++.|
T Consensus 292 a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv---N~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV---NLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc---ccccccccccccccceEEEccCe
Confidence 55543 899999998776 788999999999999999987766 66665321 11223344556666788889999
Q ss_pred CcEEEEECCCCceeeEecCC----CCCeEEEEECC
Q 009763 379 ALVKIWDVKSQANVAKFDGH----VGAVTAISFSE 409 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~ 409 (526)
...+||.++.+..+.++... ...+.+++|..
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 99999999999988877532 22455666643
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.4e-09 Score=109.91 Aligned_cols=220 Identities=16% Similarity=0.265 Sum_probs=158.6
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC--e
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--T 333 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~ 333 (526)
+...++..|....+|++|+.+.+.|+.|+..|.|++|++.++ .......+|.+.|+.+.-+.+|..+++.+.-. -
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCch
Confidence 445677788999999999999999999999999999999987 55667789999999999998998777665433 4
Q ss_pred EEEEeCCC-CeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe-cC---CCCCeEEEEEC
Q 009763 334 WCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DG---HVGAVTAISFS 408 (526)
Q Consensus 334 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~---~~~~i~~l~~s 408 (526)
..+|++.. +.....+ ..-.++.|+.....-+.|+......+||+.++..+.++ .+ ....-++..|+
T Consensus 1169 saLW~~~s~~~~~Hsf---------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HHHhccccccCccccc---------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 67899764 2233333 24567888886666666777778999999999877663 22 22334788999
Q ss_pred CCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCC
Q 009763 409 ENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGT 488 (526)
Q Consensus 409 ~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~ 488 (526)
|+..+++- || .+||.|..+.++.|.... ....=.|+|+|.-++.-+ .||++ .++..+...+..
T Consensus 1240 P~D~LIln---dG-vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINS---EIwD~----RTF~lLh~VP~L--- 1302 (1516)
T KOG1832|consen 1240 PCDTLILN---DG-VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINS---EIWDM----RTFKLLHSVPSL--- 1302 (1516)
T ss_pred CCcceEee---Cc-eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeec---hhhhh----HHHHHHhcCccc---
Confidence 98887763 33 479999988887776532 223346899999988876 57887 445555444332
Q ss_pred cceEEEEEcCCCCEEEE
Q 009763 489 GKATCVKFGPDAKYIAV 505 (526)
Q Consensus 489 ~~v~~~~~s~~~~~l~s 505 (526)
.-+.+.|+..|..++.
T Consensus 1303 -dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred -cceEEEeccCccchhh
Confidence 2355667766665543
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=2e-06 Score=77.25 Aligned_cols=205 Identities=15% Similarity=0.213 Sum_probs=124.4
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-------cccceeEEEEecCC------CEEEEEe
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-------HSKKVTSVKFVTEG------DLFLTGS 284 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~-------h~~~V~~l~~~~~~------~~l~s~s 284 (526)
+.+...+.=.-++||||+.+||.+.+.|+|++||+.. ..+..+.. -...|..+.|.+.. ..|++-.
T Consensus 38 VpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 38 VPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred cCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe
Confidence 3344445567899999999999999999999999874 33333332 23567777776422 2467777
Q ss_pred CCCcEEEEeCCC--CCceeeeEecc---cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 009763 285 ADKTVRVWQGSE--DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 285 ~dg~i~iwd~~~--~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (526)
.+|.++-|-+.. ...+...+.+. .+...|.++.++|..++|++||.... +++. .. .....
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~-------a~~~G 181 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--SK-------ASSCG 181 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--cc-------ccccC
Confidence 888888777532 23344444443 24678999999999998888765322 0000 00 00111
Q ss_pred eeEEEEcc---CCcEEEEEeCCCc------EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCC
Q 009763 360 YTSAAFHP---DGLILGTGTSEAL------VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 429 (526)
Q Consensus 360 v~~~~~~~---~~~~l~~g~~dg~------i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 429 (526)
+++-.+-. .... +....|+. ..+|.+-+.+...........|..+..||||..|++....| |.+|++..
T Consensus 182 LtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 182 LTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 22222111 1111 11111111 12333222222111122456899999999999999999999 99999999
Q ss_pred CccceEEecC
Q 009763 430 LKNFRSFESS 439 (526)
Q Consensus 430 ~~~~~~~~~~ 439 (526)
.+....+...
T Consensus 261 L~~~~~W~~~ 270 (282)
T PF15492_consen 261 LRLQRSWKQD 270 (282)
T ss_pred chhhcccchh
Confidence 8887777654
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.1e-06 Score=89.63 Aligned_cols=207 Identities=15% Similarity=0.210 Sum_probs=141.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccc-eeEEEEecCCCEEEEEeCCCc-----EEEEeCCCC-
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-VTSVKFVTEGDLFLTGSADKT-----VRVWQGSED- 297 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~dg~-----i~iwd~~~~- 297 (526)
.|+| |++++..++.|+.+|.|.+++-. .+.++.++.+... |..+....+..+|++.+.|+. ++||+++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4555 46778999999999999988753 3555777777777 444444344468888777654 899998653
Q ss_pred -Cc-eeee---Eecc----cCccceEEEEEecCCCEEEEEECCCeEEEEeCC--CCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 298 -GN-YDCK---HTLK----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 298 -~~-~~~~---~~~~----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
++ ..++ +.+. ....++.+++.+.+-+.+++|-.+|.|..+.-+ ..+..+... ......+|+.+.+.
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~---~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY---SHRGKEPITGLALR 180 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee---eccCCCCceeeEEe
Confidence 22 3444 2221 135678999999998999999999999988522 111111111 11334789999999
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCce-eeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEe
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFE 437 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~ 437 (526)
.++..++....-..|.+|.+....+ ...+..|...++|..|++....+++++...+.+||....+....+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 9887632223346799999874443 4447778889999999987766888887889999988666555554
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=2.7e-06 Score=78.75 Aligned_cols=215 Identities=16% Similarity=0.110 Sum_probs=131.6
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEE--EecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVK--FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (526)
+|+|..||..+|+.+....- ...+.... ..+++..+++++.++.+..||..++ +.+..+.. ...+.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG---KVLWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS---EEEEEEEC-SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC---CEEEEeec-ccccccee-eec
Confidence 68899999999999887753 11122222 3335667788889999999999886 44433332 11111111 224
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCC
Q 009763 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA 401 (526)
Q Consensus 322 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 401 (526)
+..++.++.++.+..+|..+|+.+............ .........++..++++..++.|..+|+++|+.+.........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 666777778899999999999998884221111111 1222233334778888888999999999999998877653322
Q ss_pred ----------eEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEE
Q 009763 402 ----------VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQ 468 (526)
Q Consensus 402 ----------i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~ 468 (526)
+..-.+..++ .++.++.++ +..+|+.+++...... . ..+.. .....+..|++++.+ +.+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 666666666 4444999998653222 1 12222 145678888888755 66666
Q ss_pred Eec
Q 009763 469 VAS 471 (526)
Q Consensus 469 ~~~ 471 (526)
...
T Consensus 229 ~~t 231 (238)
T PF13360_consen 229 LKT 231 (238)
T ss_dssp TTT
T ss_pred CCC
Confidence 643
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.8e-08 Score=90.94 Aligned_cols=216 Identities=19% Similarity=0.172 Sum_probs=152.1
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcEEEEecccccceeEEEEe-cCCC---EEEE-EeCCCcEEEEe
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-TEGD---LFLT-GSADKTVRVWQ 293 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~-dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~-~~~~---~l~s-~s~dg~i~iwd 293 (526)
..|-..|.+++.+.++.++.+.+. |..+++||+.+-..+..++.-. .-..+.|. ..|. .++. .-.+|.+.|+|
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence 456678889999999999999877 9999999988755543332111 11223332 2231 2333 33678999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC------CeEEEEeec----CCCCCCCCCeeEE
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS------GICLTQVSD----AGTDGRPEGYTSA 363 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~----~~~~~~~~~v~~~ 363 (526)
-..+.. +....-.-|..+|.++.+++.+..+++....|.|..|..+. ......+.. ...........++
T Consensus 129 ~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 129 GFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred CcCCcC-ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence 765432 22333346999999999999999999999999999999873 111111110 0111233567899
Q ss_pred EEccCCcEEEEEeCCCcEEEEECCCCceeeEec--------------------------------CC-CCCeEEEEECCC
Q 009763 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--------------------------------GH-VGAVTAISFSEN 410 (526)
Q Consensus 364 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------------------~~-~~~i~~l~~s~~ 410 (526)
.|+|+|..+.+-+.|..|+++++++++.++.+. .| ...-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 999999999999999999999999987665442 11 123356789999
Q ss_pred CCEEEEEeCCcEEEEEcCCCccceEEe
Q 009763 411 GYYLATAAHDGVKLWDLRKLKNFRSFE 437 (526)
Q Consensus 411 ~~~l~~~~~d~i~iwd~~~~~~~~~~~ 437 (526)
|++|+-++--||+++++.++...+.+.
T Consensus 288 ~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 288 GNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred CCEEEeecceeEEEEEeecCeEEEEec
Confidence 999999998899999999887766553
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=1.6e-08 Score=100.48 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=143.9
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCC-cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
+..+|..+|+.+.|+++. ..+++++.|-.+..||+.+. ..+..+..-...-..++|+-....+.+.+..+.|++||..
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 456789999999999965 58999999999999999874 3455555555567889998744445555667889999998
Q ss_pred CCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC--CcEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLIL 372 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l 372 (526)
.+. .++..+++|...|+.+.|+. ....+.+++.||+|+.||........... .....++.--.+.|- |.++
T Consensus 189 ~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 189 KGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred CCC--cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCcceeccccccCceeEe
Confidence 876 67778888999999999864 34568899999999999987543322211 122245666666663 3322
Q ss_pred EEEeCCCcEEEEE---------CCC-CceeeEecCCCCCeEEEEECCC----------CCEEEEEeCCc-EEEEEcCC
Q 009763 373 GTGTSEALVKIWD---------VKS-QANVAKFDGHVGAVTAISFSEN----------GYYLATAAHDG-VKLWDLRK 429 (526)
Q Consensus 373 ~~g~~dg~i~iwd---------~~~-~~~~~~~~~~~~~i~~l~~s~~----------~~~l~~~~~d~-i~iwd~~~ 429 (526)
.-.-.+..+.+++ ..+ ..+++.|.||...|....|-.. ...|++-+.|. +++|-+.+
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2222222343333 332 3678999999988876666432 24689999997 99997643
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.79 E-value=1.5e-07 Score=95.98 Aligned_cols=181 Identities=22% Similarity=0.312 Sum_probs=139.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
++..++.|+--..+..+|+.+.+..+...-..+.|.-++. +++++++|...|+|.+-|..+- +.++++..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---ETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC---ceeeeeeccccce
Confidence 3456777777778888999988877766655555666655 7889999999999999998775 8899999999999
Q ss_pred EEEEEecCCCEEEEEEC---------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEE
Q 009763 314 QAVTVHATNKYFVTASL---------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKI 383 (526)
Q Consensus 314 ~~l~~~p~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~i 383 (526)
..+.. .|+.|+++|. |..|+|||++..+.+.-+.. .....-+.|+| -...+++.+..|...+
T Consensus 221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~------~~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF------PYGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc------ccCchhhhhcccccceEEEEecccceee
Confidence 88877 5999999985 45689999998776655532 12335678888 3467888888999999
Q ss_pred EEC---CCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEc
Q 009763 384 WDV---KSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 427 (526)
Q Consensus 384 wd~---~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~ 427 (526)
-|. .+. ..+..+......+..+.++++|..|+.|..+| |.+|--
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 993 333 22333444455699999999999999999998 999973
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.2e-07 Score=84.64 Aligned_cols=242 Identities=14% Similarity=0.129 Sum_probs=145.2
Q ss_pred cccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~ 295 (526)
+...|...|..++|+|..+ ++..++.+..|+|.|+.+...+..+..| ..+++++|.-+. +++..|..+|.|.|||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5566778899999999877 8888999999999999999999888888 789999998754 578888899999999998
Q ss_pred CCCceeeeEecccCccceEEEEEe------cCCCEEEEEECCCeEEEEeCCCC--eEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVH------ATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~------p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
......+...-.-...+|..++.- +.|.+++..+.+ +..|.+.-. ....... .+.++...++..++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle----le~pG~cismqy~~ 340 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE----LEPPGICISMQYHG 340 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc----cCCCcceeeeeecC
Confidence 754221111111123455555432 234444444433 445554321 1111111 02234556666666
Q ss_pred CCcEEEEEeCCC-------cEE-EEECCCCceeeEecC-C-CCC------eEEEEECCCCCEEEEEeCCc--EEEEEcCC
Q 009763 368 DGLILGTGTSEA-------LVK-IWDVKSQANVAKFDG-H-VGA------VTAISFSENGYYLATAAHDG--VKLWDLRK 429 (526)
Q Consensus 368 ~~~~l~~g~~dg-------~i~-iwd~~~~~~~~~~~~-~-~~~------i~~l~~s~~~~~l~~~~~d~--i~iwd~~~ 429 (526)
-.+.++...... .+- --|.++|.++..-+. + .+. -..+.-.++.++++..+++. +.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 444444433321 011 112233333322211 1 000 01111233455666555553 99999999
Q ss_pred CccceEEecCCCCCCeeEEEEcC--CCCEEEEEeCC-eEEEEE
Q 009763 430 LKNFRSFESSDSETPTNSVDFDH--SGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 430 ~~~~~~~~~~~~~~~i~~i~~s~--~~~~l~~~~~d-i~v~~~ 469 (526)
...+..+... .++..++... .+.||++-.++ ++||..
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhheecceEEEEec
Confidence 9998888773 5777766543 35688888877 888875
No 317
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.77 E-value=8.3e-09 Score=87.65 Aligned_cols=54 Identities=30% Similarity=0.489 Sum_probs=48.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh----------------cCCCCCCCCCCCcCccccccC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD----------------YGKCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~p~~~~~~~~~~~~~~~~ 55 (526)
+.|+|+.+..++||+++ |||+|++.+|.+|+.. ..+||+|..+++..+|++|-.
T Consensus 19 ~~CpICld~~~dPVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 19 FDCNICLDQVRDPVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCccCCCcCCCcEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 46999999999999996 9999999999999853 258999999999999999975
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=3.5e-08 Score=89.85 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=119.8
Q ss_pred EEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-----eEEEEeecCCCCC
Q 009763 281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDG 355 (526)
Q Consensus 281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~ 355 (526)
++.+.+-.|-+-|+.++ ....|. ..+.|.++.|+..+++++.|+.+|.|..+|++.. .+...+ .
T Consensus 228 fs~G~sqqv~L~nvetg----~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl------y 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG----HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL------Y 296 (425)
T ss_pred ecccccceeEEEEeecc----cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE------E
Confidence 55566677888888874 333443 5678999999988999999999999999999865 233333 4
Q ss_pred CCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCce---eeEecCCCCCeEE--EEECCCCCEEEEEeCCc-EEEEEcC
Q 009763 356 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTA--ISFSENGYYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 356 ~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~--l~~s~~~~~l~~~~~d~-i~iwd~~ 428 (526)
|.+.|+++..-. ++..|.+.+.+|.|++||+|.-++ +..+.+|...-.- +-..+....++++++|. .+||.++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 567899998877 788899999999999999997766 8888887543322 33445566788888888 9999999
Q ss_pred CCccceEEecCCC--CCCeeEEEEc
Q 009763 429 KLKNFRSFESSDS--ETPTNSVDFD 451 (526)
Q Consensus 429 ~~~~~~~~~~~~~--~~~i~~i~~s 451 (526)
.+..+.++..... ...+.+++|+
T Consensus 377 ~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 377 SGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCceeeccCCCCccccccccceehh
Confidence 9998888776532 2234555554
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.73 E-value=1.1e-05 Score=80.88 Aligned_cols=266 Identities=11% Similarity=0.052 Sum_probs=149.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceE
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (526)
++.++.++.+|.+.-+|..+|+.+...........+... .+..++.++.+|.+.-+|..++. .+..+......+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~---~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGA---VKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCC---EeeeecCCCCccc
Confidence 566777888999999999999988776643221111112 24467778888999999998873 3333321110000
Q ss_pred E-EEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCeeEEEEcc--CCcEEEEEeCCCcEEEEECC
Q 009763 315 A-VTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIWDVK 387 (526)
Q Consensus 315 ~-l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~~ 387 (526)
. ...+| .+..++.++.+|.+..+|..+|+.+.........+.. .....+..+| .+..+++++.+|.+..+|..
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0 00011 2345777888999999999999876654321110000 0011111222 34566677789999999999
Q ss_pred CCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEE
Q 009763 388 SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRV 466 (526)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v 466 (526)
+++.+..... +....+.. .+..++.++.++ +..+|..+++.+-...... .....+..+ .+.+|++++.+..+
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l 347 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYL 347 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEE
Confidence 9987665432 11122222 345666666666 9999998887654332211 111122222 25667777777555
Q ss_pred EEEecccCcceeeeeecCCCCCcceE-EEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 467 YQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
+-++. .+.+.+...... ...+. ...+ .+..|+.++.||.|+.++++
T Consensus 348 ~~ld~--~tG~~~~~~~~~--~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 348 HWINR--EDGRFVAQQKVD--SSGFLSEPVV--ADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred EEEEC--CCCCEEEEEEcC--CCcceeCCEE--ECCEEEEEeCCceEEEEeCC
Confidence 54443 233444443321 11222 1222 23468888999999988763
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=1.6e-05 Score=84.32 Aligned_cols=202 Identities=13% Similarity=0.185 Sum_probs=133.9
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC----CCCc
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS----EDGN 299 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~----~~~~ 299 (526)
+.|.++.|..+++-++.+...|.|.+-|..+..... ...-...|.+++|+||+..++..+.++++.+-+-. ....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 589999999999999999999999999887654322 22245679999999999999998888887765420 0000
Q ss_pred ----------------eeeeEecccC---------------------ccceEEEEEecCCCEEEEEE----CC-CeEEEE
Q 009763 300 ----------------YDCKHTLKDH---------------------TAEVQAVTVHATNKYFVTAS----LD-NTWCFY 337 (526)
Q Consensus 300 ----------------~~~~~~~~~h---------------------~~~v~~l~~~p~~~~l~s~s----~d-g~i~iw 337 (526)
.+....|.|. .+.=+.+.|-.||.++++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0000111110 11123588999999998843 23 789999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe---CCCcEEEEECCC---CceeeEecCCCCCeEEEEECCCC
Q 009763 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKS---QANVAKFDGHVGAVTAISFSENG 411 (526)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~~ 411 (526)
|-+ |..-..-. .....-.+++|-|.|.++++-. .|+.|.+|.-+. ++-...+......|..++|+.++
T Consensus 228 drE-g~Lns~se-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 228 DRE-GALNSTSE-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred ccc-chhhcccC-----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 987 43221111 1123456899999999988853 456788887432 12222233334459999999999
Q ss_pred CEEEE---EeCCc-EEEEEcCCCcc
Q 009763 412 YYLAT---AAHDG-VKLWDLRKLKN 432 (526)
Q Consensus 412 ~~l~~---~~~d~-i~iwd~~~~~~ 432 (526)
..|++ ..... |++|-+.+..-
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEE
Confidence 99998 34444 99998877543
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=1.9e-05 Score=69.83 Aligned_cols=265 Identities=14% Similarity=0.144 Sum_probs=137.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
-|++++.|+..|.+++.+.++|..+..+.....-=......+++.++..|+.|++.+..|..+. .++...+...+.-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCcee
Confidence 3778999999999999999999887776643321122334568999999999999999998875 5666655433333
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE--EEEccCCcEEEEEeCCCcEEEEECCCCce
Q 009763 314 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS--AAFHPDGLILGTGTSEALVKIWDVKSQAN 391 (526)
Q Consensus 314 ~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 391 (526)
.+-+..|....|..+...|.+.--..+.......... ....++.+ ++. +..+..+.-||.+.-+| ..|+.
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~----~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~q 210 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAA----TRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQ 210 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCCCcceehhh----hcCCccccCceec---cceEEEEEeccEEEEEc-CCCcE
Confidence 3334455334455555556655555444421111100 00011111 111 22344444556555555 34444
Q ss_pred eeEecCCCCCe-----------EEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEc-CC---CCE
Q 009763 392 VAKFDGHVGAV-----------TAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFD-HS---GSY 456 (526)
Q Consensus 392 ~~~~~~~~~~i-----------~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s-~~---~~~ 456 (526)
+..+. ..++| ..+.+-.++-+.+..-..+-.+|..+.+...+.+... -....++ |. .++
T Consensus 211 vwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p-----~l~F~~h~~~~S~~~l 284 (354)
T KOG4649|consen 211 VWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSP-----KLRFDLHSPGISYPKL 284 (354)
T ss_pred EEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCc-----ccceeccCCCCcchhh
Confidence 44332 11222 2233322332322222234566776666443333221 1112221 11 356
Q ss_pred EEEEeCCeEEEEEecccCcceeeeeecCCC-CCcceEEEE-----E-cC---CCCEEEEEeCCCcEEEeeCCCC
Q 009763 457 LAVASADIRVYQVASVKADWNCIKTFPDLS-GTGKATCVK-----F-GP---DAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 457 l~~~~~di~v~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-----~-s~---~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
|..++.|.++|.+...+. +.....+. .-+.+..+. | || +| .|+.|+.|..|+-||+.+.
T Consensus 285 l~~~s~dgkv~il~~~~s----l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 285 LRRSSGDGKVMILMTSKS----LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhhcCCCcEEEEEeccc----ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 777777888887733211 22222110 012233222 2 22 44 4777889999999999764
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.68 E-value=2.1e-05 Score=78.74 Aligned_cols=267 Identities=14% Similarity=0.068 Sum_probs=148.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccccc----------cee-EEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK----------KVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~----------~V~-~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.++.+++++.+|.+.-+|..+|+.+........ .+. .+.. ++..++.++.+|.+..+|..++. .
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~---~ 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE---V 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC---C
Confidence 366778888889999999999998776543220 000 1111 35567788889999999998863 3
Q ss_pred eEecccCccceEE-EEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 303 KHTLKDHTAEVQA-VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 303 ~~~~~~h~~~v~~-l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
+...... ..+.+ ... .+..++.++.+|.+..+|..+|+.+................+-.. .+..++.++.+|.+
T Consensus 143 ~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v 217 (394)
T PRK11138 143 AWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRV 217 (394)
T ss_pred cccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEE
Confidence 3333222 12211 111 245677788899999999999998887753211000000001111 22356677789999
Q ss_pred EEEECCCCceeeEecCCCC-------CeEEEEECC--CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 382 KIWDVKSQANVAKFDGHVG-------AVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~-------~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
..+|..+++.+........ ....+..+| .+..++.++.++ +..+|..+++.+....... ...+..
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~- 292 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFAV- 292 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcEE-
Confidence 9999999887655431100 011111122 234555566666 9999999988765543321 111222
Q ss_pred CCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 452 HSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 452 ~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.+..+++++.+..++-++... ...+-...... .....+..+ .+.+|+.++.||.|+++|..+++
T Consensus 293 -~~~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 293 -DGGRIYLVDQNDRVYALDTRG--GVELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred -ECCEEEEEcCCCeEEEEECCC--CcEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 355666666664444443321 22221111100 111112222 24567788889999888876654
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=6.9e-08 Score=61.09 Aligned_cols=39 Identities=38% Similarity=0.844 Sum_probs=36.8
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
++++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=5.3e-06 Score=83.02 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=89.7
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
..|.--+++..+++++.|++-|.+++|+...+.... ...+..+.+..+..+++..++|.|+..|.|.++-++.......
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 345445566779999999999999999987665433 2333445566677888888899999999999998776432222
Q ss_pred eEec---ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC
Q 009763 303 KHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS 341 (526)
Q Consensus 303 ~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~ 341 (526)
...- ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2211 23778999999999999999999999999988877
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.66 E-value=2.2e-05 Score=83.32 Aligned_cols=200 Identities=13% Similarity=0.178 Sum_probs=132.1
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC----C
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL----S 340 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~----~ 340 (526)
...|.++.|..++..++.+..+|.|.+-|..+. .......-...|.+++|+||+..++..+.++++.+-+- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 357999999999999999999999999988773 22222334578999999999999999988888776442 1
Q ss_pred CC-------------------eEEEEeecCCC----------------CCCCCCeeEEEEccCCcEEEEE-----eCCCc
Q 009763 341 SG-------------------ICLTQVSDAGT----------------DGRPEGYTSAAFHPDGLILGTG-----TSEAL 380 (526)
Q Consensus 341 ~~-------------------~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~g-----~~dg~ 380 (526)
.- +...++.+... ....+.=+.++|--||.++++. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11 11111110000 0011223468999999999983 33378
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCccceEEe--cCCCCCCeeEEEEcCCC
Q 009763 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFE--SSDSETPTNSVDFDHSG 454 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~--~~~~~~~i~~i~~s~~~ 454 (526)
|++||.. +..-..-....+.-.+++|-|.|.++++-..+ + |.+|.-...+ ...+. .......+..++|+.++
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccchheeeecCCC
Confidence 9999976 44333333334455789999999999986443 3 8888754322 22221 11123448999999999
Q ss_pred CEEEEEe---CC--eEEEEEe
Q 009763 455 SYLAVAS---AD--IRVYQVA 470 (526)
Q Consensus 455 ~~l~~~~---~d--i~v~~~~ 470 (526)
..|++-. .. +++|.+.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CceeeeecccccceEEEEEec
Confidence 9999833 33 8899873
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=9.5e-05 Score=68.65 Aligned_cols=225 Identities=16% Similarity=0.156 Sum_probs=143.8
Q ss_pred eeEEEEec-CCCEEEEEeCCCc-EEEEeCCCCCceeeeEecccCccc--eEEEEEecCCCEEEEEEC-----CCeEEEEe
Q 009763 268 VTSVKFVT-EGDLFLTGSADKT-VRVWQGSEDGNYDCKHTLKDHTAE--VQAVTVHATNKYFVTASL-----DNTWCFYD 338 (526)
Q Consensus 268 V~~l~~~~-~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~l~s~s~-----dg~i~iwd 338 (526)
...++.+| .+..++.+-.-|+ ..+||..++. ....+....+. --.-.|+++|++|++.-. .|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~---~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQ---LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc---eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34577788 4555666666655 5678887763 22222211111 113569999999998744 48899999
Q ss_pred CC-CCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC------------------CCcEEEEECCCCceeeEec---
Q 009763 339 LS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------------------EALVKIWDVKSQANVAKFD--- 396 (526)
Q Consensus 339 ~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------------------dg~i~iwd~~~~~~~~~~~--- 396 (526)
.. +...+..+...+. .-..+.+.|||..|+++.. +-.+.+.|..+++.+....
T Consensus 84 ~~~~~~ri~E~~s~GI-----GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGI-----GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred CcCCcEEEeEecCCCc-----ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 99 5566666654333 3456789999977776531 2356667778888776632
Q ss_pred -CCCCCeEEEEECCCCCEEEEEeCCc--------EEEEEcCCCccceEEecCC-----CCCCeeEEEEcCCCCEEEEEeC
Q 009763 397 -GHVGAVTAISFSENGYYLATAAHDG--------VKLWDLRKLKNFRSFESSD-----SETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 397 -~~~~~i~~l~~s~~~~~l~~~~~d~--------i~iwd~~~~~~~~~~~~~~-----~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
.|...|..+++.++|..++..-..+ |-+++. +..+..+.... ....+-+|++++++.++++.+-
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 3677899999999998777654321 444443 33333333221 2468999999999999998887
Q ss_pred C---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 463 D---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 463 d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
. +.+|+. .+...+.... -..+..++-.+++ ++++.+ .|.+
T Consensus 237 rGg~~~~~d~----~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 237 RGGRVAVWDA----ATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred CCCEEEEEEC----CCCCEeeccc----cCceeeeeecCCc-eEEeCC-CccE
Confidence 6 788875 4444444433 2356777777666 666655 4544
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.65 E-value=1.5e-05 Score=73.80 Aligned_cols=191 Identities=12% Similarity=0.134 Sum_probs=120.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec-ccC---
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDH--- 309 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h--- 309 (526)
++..+++++.++.+..||..+|+.+..+.. ...+.... ...+..+++++.++.+..+|..++. .+... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~---~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGK---VLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSC---EEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcc---eeeeeccccccc
Confidence 567777778999999999999999887764 22222212 2245567777788899999988874 33331 111
Q ss_pred ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC------eeEEEEccCCcEEEEEeCCCcEEE
Q 009763 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG------YTSAAFHPDGLILGTGTSEALVKI 383 (526)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~g~~dg~i~i 383 (526)
............++.++.+..++.|..+|+.+|+.+........ ..... +..-.+..++ .++.++.++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC-CCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 01122233333488899999999999999999999888764211 11111 1222333345 6666777776444
Q ss_pred EECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccce
Q 009763 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 434 (526)
Q Consensus 384 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~ 434 (526)
+|+.+++.+.... ...+..+ ....+..|++++.++ |..||+++++...
T Consensus 188 ~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 188 VDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 4999998664333 2233332 345667777777666 9999999987653
No 328
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.1e-09 Score=89.37 Aligned_cols=52 Identities=35% Similarity=0.547 Sum_probs=49.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~ 53 (526)
++|.|+.+++++|||+| ||.+|+|.-|++|++.-|. ||+|+.+|+..+|||-
T Consensus 212 lcgkIt~el~~~pvi~p-sgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN 264 (284)
T KOG4642|consen 212 LCGKITLELMREPVITP-SGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPN 264 (284)
T ss_pred hhhhhhHHhhcCCccCc-cccchhHHHHHHHHHHhccCCchhcccCCHHhhccc
Confidence 46899999999999998 9999999999999999995 9999999999999986
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=6.1e-07 Score=90.86 Aligned_cols=271 Identities=11% Similarity=0.032 Sum_probs=152.8
Q ss_pred EEEecCCCCEEEEEe----CCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 228 SLDIHYSKDVIATGG----VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~----~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
-..|+|...++|+++ ..|.|.||- ++|++.+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+. +..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~h 94 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETH 94 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc---eee
Confidence 345888888888775 368888884 4565544322 1223577999999888999999999999988764 333
Q ss_pred EecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC-CCCCCCCeeEEEEccCCc------EEEEEe
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHPDGL------ILGTGT 376 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~------~l~~g~ 376 (526)
.....|..+|..+.|+++|..++++..-|.+.+|....-..+....... .-+..-...|...++++. ..++.+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 3345799999999999999999999999999999876332222211100 001112234555566531 223333
Q ss_pred CCCcEE-EEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 377 SEALVK-IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 377 ~dg~i~-iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
.+..+- .++.+......... +. =.|+|..++.++.+| |+-.|- +++........ +. ..+-|.+..
T Consensus 175 De~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~d---S~-vQmLf~~~~ 241 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLD---SE-VQMLFMGYC 241 (1416)
T ss_pred chhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEcc---ch-HHHHHhccc
Confidence 333222 33332111111111 11 135777777777777 655552 33333333221 11 123333333
Q ss_pred CEEEEEeCC--eEEEEEeccc------------Cc-ce--------------eeeeecCCCCCcceEEEEEcCCCCEEEE
Q 009763 455 SYLAVASAD--IRVYQVASVK------------AD-WN--------------CIKTFPDLSGTGKATCVKFGPDAKYIAV 505 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~~~~~------------~~-~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s 505 (526)
.-+++-..+ ..+|...... +. .. ....+ +......++|++++..+..|+.
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKy-g~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKY-GLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcch-hhhcCCceEEEEEeccceEEEe
Confidence 333333333 2222211100 00 00 00011 1112457899999999999999
Q ss_pred EeCCCcEEEeeC
Q 009763 506 GSMDRNLRVFGL 517 (526)
Q Consensus 506 ~~~dg~v~iw~l 517 (526)
|...|.+.+|.-
T Consensus 321 gt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 321 GTKEGNVTIWLD 332 (1416)
T ss_pred cccCCcEEEeee
Confidence 999999999964
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.63 E-value=2.5e-05 Score=79.09 Aligned_cols=167 Identities=15% Similarity=0.085 Sum_probs=104.6
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe----------------------------------
Q 009763 331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---------------------------------- 376 (526)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---------------------------------- 376 (526)
.+.+.+.|.++.+...++... .....+.++++|.++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkd 287 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKA 287 (635)
T ss_pred eEEEEEEECccceEEEEEEeC------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhC
Confidence 456778888887777666532 1234566777777766664
Q ss_pred ------CCCcEEEEECCC----C-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCcc-----------
Q 009763 377 ------SEALVKIWDVKS----Q-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKN----------- 432 (526)
Q Consensus 377 ------~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~----------- 432 (526)
.++.|.++|.++ + +.+..+. -......+.++|||+++++++.-. |.|+|+.+.+.
T Consensus 288 GK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 288 GKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 124577888776 2 3333333 345678899999999999887753 99999988663
Q ss_pred -ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEec------ccCcceeeeeecCCCCCcceEE---EEEcCCC
Q 009763 433 -FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS------VKADWNCIKTFPDLSGTGKATC---VKFGPDA 500 (526)
Q Consensus 433 -~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~------~~~~~~~~~~~~~~~~~~~v~~---~~~s~~~ 500 (526)
...... .......+|+++|....+-.-| +..|++.. +.+.+..+..+..|...+.+.. =.-.+||
T Consensus 367 vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dg 443 (635)
T PRK02888 367 VVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADG 443 (635)
T ss_pred EEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCC
Confidence 222222 3456678999999866665555 88899864 1222445555555432222221 1235677
Q ss_pred CEEEEEe
Q 009763 501 KYIAVGS 507 (526)
Q Consensus 501 ~~l~s~~ 507 (526)
++|++.+
T Consensus 444 k~l~~~n 450 (635)
T PRK02888 444 KWLVSLN 450 (635)
T ss_pred CEEEEcc
Confidence 7777764
No 331
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=4.7e-07 Score=79.54 Aligned_cols=150 Identities=14% Similarity=0.179 Sum_probs=96.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc-EEEEecccccceeEEEEecCCCEEEEEeC-----CCcEEEEeCCCCCceeeeEe
Q 009763 232 HYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----DKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 232 s~~~~~l~t~~~dg~v~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~ 305 (526)
+-.++.+++++.||.+.+++.+.-. ....+..-...-.+.++...++++.++.- -+..+.|+++..+.+ +..
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~--~~~ 175 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL--IPS 175 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc--ccc
Confidence 3346789999999999999876411 11111111111222333344554444322 234556666543211 111
Q ss_pred cccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEE
Q 009763 306 LKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKI 383 (526)
Q Consensus 306 ~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~i 383 (526)
.. -...|.+++-||. .+.+++|+.||.+.+||.+.......+ ...|..++..+-||| ++..|+++++||.+.-
T Consensus 176 ~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 176 KK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----HHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11 2234999999995 456778889999999999987544433 336778999999999 7889999999999999
Q ss_pred EECCC
Q 009763 384 WDVKS 388 (526)
Q Consensus 384 wd~~~ 388 (526)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99764
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.59 E-value=2.6e-05 Score=76.74 Aligned_cols=264 Identities=17% Similarity=0.225 Sum_probs=145.2
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 232 HYSKDVIATG---------GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 232 s~~~~~l~t~---------~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
|||+++++.. +..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++. ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~--~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ--ET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE--EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCC--eE
Confidence 5777776663 2356799999998665544333 67789999999999988876 5789999876642 11
Q ss_pred eEecccC----------------ccceEEEEEecCCCEEEEEECCC-e--------------------------------
Q 009763 303 KHTLKDH----------------TAEVQAVTVHATNKYFVTASLDN-T-------------------------------- 333 (526)
Q Consensus 303 ~~~~~~h----------------~~~v~~l~~~p~~~~l~s~s~dg-~-------------------------------- 333 (526)
..+..+- -+.-..+-|+|++++|+....|. .
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 1111220 11235678999999988765431 1
Q ss_pred ---EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE--eCC---CcEEEEECCCCceeeEecC-CCC---C
Q 009763 334 ---WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG--TSE---ALVKIWDVKSQANVAKFDG-HVG---A 401 (526)
Q Consensus 334 ---i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g--~~d---g~i~iwd~~~~~~~~~~~~-~~~---~ 401 (526)
+.++|+.+++....-..........-+..+.|.+++..|+.. ..+ ..+.++|..++.....+.. ..+ .
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 233344333321100000000123456788999988833333 222 2467778877654333321 112 2
Q ss_pred eEEEEEC-CCC-CEEEEEeCCc---EEEEEcCCCccceEEecCCCCCCee-EEEEcCCCCEEEE-EeCC----eEEEEEe
Q 009763 402 VTAISFS-ENG-YYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTN-SVDFDHSGSYLAV-ASAD----IRVYQVA 470 (526)
Q Consensus 402 i~~l~~s-~~~-~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~-~i~~s~~~~~l~~-~~~d----i~v~~~~ 470 (526)
-....|. +++ .+|.....+| |.+++...+... .+... ...|. -+.++++++.|+. +..+ -.+|.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 2345554 554 4555555666 777787766532 22222 45564 4778888776654 4432 6888876
Q ss_pred cc-cCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 471 SV-KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 471 ~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
.. .....++..... .-..+.|||++++++...
T Consensus 314 ~~~~~~~~~LT~~~~-----~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDG-----DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSS-----TTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCC-----CceEEEECCCCCEEEEEE
Confidence 55 333333332211 116899999999887554
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.55 E-value=3.3e-07 Score=57.92 Aligned_cols=38 Identities=18% Similarity=0.493 Sum_probs=36.3
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEe
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd 338 (526)
+++..+.+|...|++|+|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57888999999999999999999999999999999997
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.52 E-value=2.9e-05 Score=77.52 Aligned_cols=220 Identities=12% Similarity=0.148 Sum_probs=119.2
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 009763 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 264 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~ 343 (526)
..-....+.++|+|+++++ +.||...||..... +.. ..+.-....|.+ .+.+++-...++|.++.--+..
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~k-----~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RNK-----AFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EEE-----EEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---ccc-----ccCceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 4445789999999998888 45678888874332 221 123455678887 4456777778889996322222
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEE
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVK 423 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~ 423 (526)
....+.. +..+..+-. |.+|+..+. +.|.+||+.+++.+..+... +|..+.|+++|.+++..+.+.+.
T Consensus 101 ~~k~i~~------~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~ 168 (443)
T PF04053_consen 101 VVKSIKL------PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIY 168 (443)
T ss_dssp TT-----------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEE
T ss_pred cceEEcC------CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEE
Confidence 2122221 012333322 777777654 48999999999999998743 48999999999999999999877
Q ss_pred EEEcCCC-----------ccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcce
Q 009763 424 LWDLRKL-----------KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKA 491 (526)
Q Consensus 424 iwd~~~~-----------~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v 491 (526)
|++.... ..+..+... ...|.+..|..+ .++..+.. ++. +- ......+..+ ..++
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d--~fiYtT~~~lkY--l~--~Ge~~~i~~l-----d~~~ 235 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVED--CFIYTTSNHLKY--LV--NGETGIIAHL-----DKPL 235 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETT--EEEEE-TTEEEE--EE--TTEEEEEEE------SS--
T ss_pred EEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcC--EEEEEcCCeEEE--EE--cCCcceEEEc-----CCce
Confidence 7765432 022222221 357899999876 44444444 444 31 2333444444 3355
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 492 TCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 492 ~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.=+.+.++.+.|+....|+.|..+.++
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 666777777889999999999988775
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.44 E-value=0.00012 Score=77.06 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=94.8
Q ss_pred eCCCcEEEEeCCCCCceeeeEecccCccc-eEEEEEec-----CCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCC
Q 009763 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGR 356 (526)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p-----~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 356 (526)
.....|+-.|++.+ +.+.....|... |..++-.. ++..-+.|-.+..+..||.+-.. .+..-... .-..
T Consensus 501 ~~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k-~Y~~ 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK-QYSS 576 (794)
T ss_pred CCCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-cccc
Confidence 34577888899887 677777666543 55554321 13345667778899999988643 11111111 1123
Q ss_pred CCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEc
Q 009763 357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL 427 (526)
Q Consensus 357 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~ 427 (526)
.....|++-..+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+|+++.+..-+.+++.
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 3567788777776 588999999999999433233334566678999999999999999988877878775
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.41 E-value=0.00065 Score=69.85 Aligned_cols=198 Identities=13% Similarity=0.169 Sum_probs=118.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccccc------cee--EEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK------KVT--SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~------~V~--~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (526)
+..+++++.++.+.-+|..+|+.+..+..... .+. .+... ++..++.++.+|.|.-+|..++ +.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG---~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG---KQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC---CEeeee
Confidence 45667777789999999999988877653322 010 11111 2267888889999999999887 333333
Q ss_pred ccCccc-----eE-EEEEecCCCEEEEEE---------CCCeEEEEeCCCCeEEEEeecCCCCCC---------------
Q 009763 307 KDHTAE-----VQ-AVTVHATNKYFVTAS---------LDNTWCFYDLSSGICLTQVSDAGTDGR--------------- 356 (526)
Q Consensus 307 ~~h~~~-----v~-~l~~~p~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------- 356 (526)
...... +. ...+. +..++.++ .+|.+..+|..+|+.+..+........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 221110 11 11122 24454543 368899999999998887753211000
Q ss_pred -CCCeeEEEEccCCcEEEEEeCCC------------------cEEEEECCCCceeeEecCCCCCe------EEEEEC---
Q 009763 357 -PEGYTSAAFHPDGLILGTGTSEA------------------LVKIWDVKSQANVAKFDGHVGAV------TAISFS--- 408 (526)
Q Consensus 357 -~~~v~~~~~~~~~~~l~~g~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i------~~l~~s--- 408 (526)
...-....+.+.+.++++++.++ .|.-+|..+++.+-.++...... ....+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 00011344555567788887665 69999999999887764211111 001111
Q ss_pred -CCCC---EEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 409 -ENGY---YLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 409 -~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
-+|. .+++++.++ +..+|.++++.+.....
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence 1333 567777777 99999999998776543
No 337
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.34 E-value=6.7e-07 Score=56.17 Aligned_cols=39 Identities=36% Similarity=0.560 Sum_probs=33.4
Q ss_pred ccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCC
Q 009763 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVT 41 (526)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 41 (526)
|+|..+.+.+||+...+||+|.+..|++|++.+.+||++
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 889999999996656799999999999999998899974
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.34 E-value=0.0013 Score=65.78 Aligned_cols=206 Identities=14% Similarity=0.191 Sum_probs=108.2
Q ss_pred cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce---eeeEecccCccceEEEEEecCC
Q 009763 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY---DCKHTLKDHTAEVQAVTVHATN 322 (526)
Q Consensus 246 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~~p~~ 322 (526)
.|.+|+.. |+.+.++.-..+.|.++.|+.+. .|+....||.+++||+.....+ ..+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 49999876 67777665444889999998755 4666778999999998643100 0011111111122222332244
Q ss_pred CEEEEEECCCeEEEEeCCCCe-EEEEeec-CC--CCCCC-CCeeE-EEEccCCcEEEEEeCCCcEEEEECCCCceeeEec
Q 009763 323 KYFVTASLDNTWCFYDLSSGI-CLTQVSD-AG--TDGRP-EGYTS-AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 396 (526)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~~-~~--~~~~~-~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 396 (526)
-.++ ..++.+.+..-.... ....+.. .. ...+. ..... ..++.+....+....++.+.+.+-...+. +.
T Consensus 140 ivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 IVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred EEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 2233 334444444322211 1111110 00 00000 00111 23344444444444455555444322211 22
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 397 ~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
..+++..+++||+|++++.-..+| +.+....-.+....+.... ......+.|.-+...++.-
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCCcEEEEe
Confidence 246899999999999999998888 8888765555555555542 3566788887655444433
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=1.4e-05 Score=79.98 Aligned_cols=202 Identities=10% Similarity=0.107 Sum_probs=128.8
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~ 344 (526)
...|.--++...+++++.|+.-|.+.+|+-..+. -......+-.+.+..+..+++..+++.|+..|.|.++-++....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 3445555667788999999999999999876642 12222233445666777888888999999999999998876433
Q ss_pred EEEee-cCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC----ceeeEecCCCCCeEEEEECCCCCEEEEEeC
Q 009763 345 LTQVS-DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 345 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 419 (526)
..... ......|...|++++|++++..+++|...|.|..-.+.+. ...+.+....+.|..+.+. ++.+|++. -
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt-l 188 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST-L 188 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh-h
Confidence 22211 1123357889999999999999999999999998888762 1222333345677777765 34444443 3
Q ss_pred CcEEEEEcCCCccceEEecCCCCC-CeeEEEEcCC-----CCEEEEEeCCeEEEEEec
Q 009763 420 DGVKLWDLRKLKNFRSFESSDSET-PTNSVDFDHS-----GSYLAVASADIRVYQVAS 471 (526)
Q Consensus 420 d~i~iwd~~~~~~~~~~~~~~~~~-~i~~i~~s~~-----~~~l~~~~~di~v~~~~~ 471 (526)
-...+++...... ..+......+ .-...+|-|. ...|+++--..|+|..+.
T Consensus 189 ~r~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~ 245 (726)
T KOG3621|consen 189 TRCILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADF 245 (726)
T ss_pred hhhheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeec
Confidence 3345566554332 2222111122 1234455443 456666666699998763
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.30 E-value=0.00027 Score=64.75 Aligned_cols=200 Identities=11% Similarity=0.159 Sum_probs=115.8
Q ss_pred CCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc--
Q 009763 224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-- 299 (526)
Q Consensus 224 ~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-- 299 (526)
..+..++|+|+.+ ++++....+.|.-++.. |+.++.+.-. .+..-.|++..++.++++--.++.+.++++.....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 3499999999755 67777778888888874 7888776533 35578899987887777666689999998844321
Q ss_pred -eeeeEec-----ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC---CeEEEEeec---CCCCCCCCCeeEEEEcc
Q 009763 300 -YDCKHTL-----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---GICLTQVSD---AGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 300 -~~~~~~~-----~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~---~~~~~~~~~v~~~~~~~ 367 (526)
......+ ..+...+-.++|.|.++.|+.+-......+|.+.. ...+..... .........+.++.++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1111111 12445689999999888888887776666666543 222211110 00112334678999999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCceeeEecCCC---------CCeEEEEECCCCCEEEEEeCCcEEEE
Q 009763 368 -DGLILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATAAHDGVKLW 425 (526)
Q Consensus 368 -~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~~~~~d~i~iw 425 (526)
.+.+++.+..+..|..+| .+|+.+..+.-.. ...-.|+|.++|++.+++--+-.++|
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 667888888889999999 6777666553221 35788999999977666533324443
No 341
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.6e-07 Score=83.65 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=51.1
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccccC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 55 (526)
.|+++..++++||-++ .|.|||-..|..||+.+|+.|+||++|...|||.++-
T Consensus 42 hC~lt~~Pfe~PvC~~-dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F 94 (518)
T KOG0883|consen 42 HCSLTMLPFEDPVCTV-DGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLKF 94 (518)
T ss_pred hceeccccccCccccc-CCcEEeeehhhHHHHHcCCCCCCCCccccccceeeee
Confidence 5999999999999995 9999999999999999999999999999999999986
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.29 E-value=0.00021 Score=70.41 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=135.4
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE-------------------------------------------EEEe
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-------------------------------------------VTTL 261 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~-------------------------------------------~~~~ 261 (526)
.|+++.|+++..-|++|...|.|.||.+...+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988999999999999996432111 1112
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEe--ccc------CccceEEEEEec-----CC---CEE
Q 009763 262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT--LKD------HTAEVQAVTVHA-----TN---KYF 325 (526)
Q Consensus 262 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~------h~~~v~~l~~~p-----~~---~~l 325 (526)
....++|++++.+ |=-+++.|..+|.+.|.|++.. ..+.. +.. ....|+++.|.. |+ -.+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 2346789999987 4448999999999999999765 23322 222 234688888863 22 368
Q ss_pred EEEECCCeEEEEeCC--C-CeEEEEeecCCCCCCCCCeeEEE-EccC-C-------------------cEEEEEeCCCcE
Q 009763 326 VTASLDNTWCFYDLS--S-GICLTQVSDAGTDGRPEGYTSAA-FHPD-G-------------------LILGTGTSEALV 381 (526)
Q Consensus 326 ~s~s~dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~-------------------~~l~~g~~dg~i 381 (526)
++|...|.+.+|.+. . +.....+.... ..+...+..+. |+.+ | ..+++...+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 899999999999874 1 22222222111 12334444444 3211 0 123444456789
Q ss_pred EEEECCCCceeeEecCCCCCeEEEEEC-----CCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC--CCCeeEEEEcCC
Q 009763 382 KIWDVKSQANVAKFDGHVGAVTAISFS-----ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHS 453 (526)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s-----~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~s~~ 453 (526)
+++..-+.+..++.....-....+.+- ..+..|++-..+| |++|.+...+.+........ ...+....++++
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 999998877666554222233344452 3567788888888 99999999998888776421 123556778999
Q ss_pred CCEEEEEeCC-eEEEEE
Q 009763 454 GSYLAVASAD-IRVYQV 469 (526)
Q Consensus 454 ~~~l~~~~~d-i~v~~~ 469 (526)
|..++..+.. +.++.+
T Consensus 318 Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 318 GDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp S-EEEE-SSSEEEEEEE
T ss_pred CCEEEEeCcccEEEEEE
Confidence 9998887765 555444
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.28 E-value=0.00021 Score=71.42 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=87.2
Q ss_pred CccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCC
Q 009763 309 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS 388 (526)
Q Consensus 309 h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 388 (526)
.......+.++|+|+++++ +.||...++..........- .-..++|.+.+. +|+-..++.|.|+.--.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G----------~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFG----------SGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEE----------E-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccC----------ceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 4445789999999999888 56788888885544443321 345788988554 66666688899974323
Q ss_pred CceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 009763 389 QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVY 467 (526)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~ 467 (526)
.+....+... ..+..+-. |.+|...+.+.|.+||..+++.++.+... +|..+.|+++|.+++..+.+ +.|+
T Consensus 99 ~~~~k~i~~~-~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 99 NEVVKSIKLP-FSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp E-TT-----S-S-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred cccceEEcCC-cccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCCeEEEE
Confidence 3332344322 23444433 88888888778999999999999998753 48999999999999999888 8888
Q ss_pred EEec
Q 009763 468 QVAS 471 (526)
Q Consensus 468 ~~~~ 471 (526)
+++.
T Consensus 171 ~~~~ 174 (443)
T PF04053_consen 171 KYNL 174 (443)
T ss_dssp EE-H
T ss_pred Eecc
Confidence 8754
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=4.7e-05 Score=75.34 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=82.1
Q ss_pred ceeEEEEec-CCCEEEEE----eCCCcE----EEEeCCCCCceeeeEec-ccCccceEEEEEecCCCEEEEEECCCeEEE
Q 009763 267 KVTSVKFVT-EGDLFLTG----SADKTV----RVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (526)
Q Consensus 267 ~V~~l~~~~-~~~~l~s~----s~dg~i----~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (526)
...++.|+- +...+.+. +.+|.+ .+|+...+ ..+.+... -.....|.+++++|+...++.|+.||+|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 346777775 33444443 334443 46766543 22333222 247788999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC
Q 009763 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 389 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 389 (526)
||...+....... .-..+.++|||+|.++++|+..|.+.+||+.-.
T Consensus 286 yD~~~~~t~~~ka-------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVTLLAKA-------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCeeeeeee-------cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9998774433321 235789999999999999999999999998644
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.24 E-value=0.0049 Score=62.25 Aligned_cols=245 Identities=13% Similarity=0.168 Sum_probs=132.2
Q ss_pred CeEEEEecCCCCEEEEE-eCCC----cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCC-----------c
Q 009763 225 GIVSLDIHYSKDVIATG-GVDT----NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK-----------T 288 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~-~~dg----~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-----------~ 288 (526)
.+..+.++|+|+++|.+ +..| .++++|+.+|+.+...-.. .....+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999988866 3334 4999999999776532111 1123499999988766655333 3
Q ss_pred EEEEeCCCCCceeeeEecccCccc--eEEEEEecCCCEEEEEEC---C-CeEEEEeCCCC----eEEEEeecCCCCCCCC
Q 009763 289 VRVWQGSEDGNYDCKHTLKDHTAE--VQAVTVHATNKYFVTASL---D-NTWCFYDLSSG----ICLTQVSDAGTDGRPE 358 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~l~s~s~---d-g~i~iwd~~~~----~~~~~~~~~~~~~~~~ 358 (526)
|+.|.+.+... .....+...... ...+..++++++++..+. + ..+.+.|+..+ .....+... . .
T Consensus 204 v~~~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~----~-~ 277 (414)
T PF02897_consen 204 VYRHKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR----E-D 277 (414)
T ss_dssp EEEEETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES----S-S
T ss_pred EEEEECCCChH-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC----C-C
Confidence 77888766432 212233332222 567888999998775433 2 34788888774 222333211 1 2
Q ss_pred CeeEEEEccCCcEEEEEe---CCCcEEEEECCCCce---eeEecCCCC--CeEEEEECCCCCEEEEEeCCc---EEEEEc
Q 009763 359 GYTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG---VKLWDL 427 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~~~~l~~~~~d~---i~iwd~ 427 (526)
.+....-+..+.+++... .++.|...++..... ...+..+.. .+..+... .+.+++....++ |+++|+
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEEC
Confidence 233333233444444443 235777778876652 224444444 45555543 234444445554 999999
Q ss_pred CCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEEecccCccee
Q 009763 428 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKADWNC 478 (526)
Q Consensus 428 ~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~~~~~~~~~ 478 (526)
..+.....+.... .+.+..+..++++..+....+. ..+|.++........
T Consensus 357 ~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 357 DDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp T-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred CCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 9444444444432 3445666666666555543333 777777665544433
No 346
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.4e-06 Score=75.52 Aligned_cols=53 Identities=26% Similarity=0.555 Sum_probs=49.1
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC---CCCCCCCCCCcCccccccC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG---KCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~ 55 (526)
-|.||-+.+++||||. |||.|+=-||-+|+...+ -||+|.-.++.+.||||=.
T Consensus 49 dCNICLd~akdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 49 DCNICLDLAKDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred eeeeeccccCCCEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4999999999999996 999999999999999885 3799999999999999964
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.002 Score=59.01 Aligned_cols=198 Identities=12% Similarity=0.207 Sum_probs=109.8
Q ss_pred EecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCceeeeEec--ccCccceEEEEEecCCCEEEEEECCCeEEE
Q 009763 260 TLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (526)
Q Consensus 260 ~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (526)
.+.+-...+..+.|.|+.+ ++++....+.|..++... +.++.+ .+ .+..-.|++..++.++++.-.++.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 4556666799999999755 666667778888777643 334433 33 356788888877777776667899999
Q ss_pred EeCCCCe------EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCC---CceeeEe--------cCCC
Q 009763 337 YDLSSGI------CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKF--------DGHV 399 (526)
Q Consensus 337 wd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~--------~~~~ 399 (526)
+++.... ....+.......++..+-.++|.+.++.|+++-...-..+|.++. ...+... ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 9984321 122232221224556799999999877777777776677776654 2211111 1233
Q ss_pred CCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCC-------CCCeeEEEEcCCCCEEEEEeCC
Q 009763 400 GAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 400 ~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~d 463 (526)
..+.+++++|.. ++++.+.... |..+| .+++....+..... -...-.|+|+++|.+.+++--+
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 467899999965 4445544444 88899 66776666655421 1357789999999777766444
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=4.8e-05 Score=75.27 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=79.4
Q ss_pred EEEEecCC-CCEEEEE----eCCCc----EEEEeCCCCcEE----EEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 227 VSLDIHYS-KDVIATG----GVDTN----AVLFDRPSGQIV----TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 227 ~~~~~s~~-~~~l~t~----~~dg~----v~vwd~~~~~~~----~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
.++.|+.. ...+.+- +.+|. -.+|+...++.. ..+ .....|.+++++|+.+.|+.|+.||+|.+||
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 56667653 3333332 22443 345665544332 122 3677899999999999999999999999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~ 344 (526)
...+ +..+....-.++.++|||+|..+++|+..|.+.+||+.-...
T Consensus 288 ~~~~-----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 288 TTRG-----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCCC-----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 8764 112223455688999999999999999999999999865543
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.18 E-value=0.0043 Score=63.83 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=127.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecccccc-----ee-EEEEecCCCEEEEEe---------CCCcEEEEeCCCCCce
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----VT-SVKFVTEGDLFLTGS---------ADKTVRVWQGSEDGNY 300 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~-----V~-~l~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~ 300 (526)
..++.++.+|.|+-+|..+|+.+..+...... +. +..+ .+..++.++ .+|.+..+|..++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-- 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-- 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCc--
Confidence 67888888999999999999998876643221 11 1122 224455554 36788888988763
Q ss_pred eeeEecccC-c-------------------cce-EEEEEecCCCEEEEEECCC------------------eEEEEeCCC
Q 009763 301 DCKHTLKDH-T-------------------AEV-QAVTVHATNKYFVTASLDN------------------TWCFYDLSS 341 (526)
Q Consensus 301 ~~~~~~~~h-~-------------------~~v-~~l~~~p~~~~l~s~s~dg------------------~i~iwd~~~ 341 (526)
.+..+... . ..| ...++.+.+..++.++.++ .+.-+|..+
T Consensus 187 -~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 187 -LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred -eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 22222211 0 011 1234445567777777665 799999999
Q ss_pred CeEEEEeecCCCCCC----CCCeeEEEEc-cCCc---EEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCE
Q 009763 342 GICLTQVSDAGTDGR----PEGYTSAAFH-PDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 342 ~~~~~~~~~~~~~~~----~~~v~~~~~~-~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (526)
|+....+........ .....-.... -++. .+++++.+|.+..+|.++++.+...... ...+..+| + .
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~ 340 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-L 340 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-e
Confidence 999888753211100 0000001111 1333 6888889999999999999988765421 11223333 2 2
Q ss_pred EEEE------------------eCCc-EEEEEcCCCccceEEecCCCC------CCe--eEEEEcCCCCEEEEEeCCeEE
Q 009763 414 LATA------------------AHDG-VKLWDLRKLKNFRSFESSDSE------TPT--NSVDFDHSGSYLAVASADIRV 466 (526)
Q Consensus 414 l~~~------------------~~d~-i~iwd~~~~~~~~~~~~~~~~------~~i--~~i~~s~~~~~l~~~~~di~v 466 (526)
++.+ ..++ +.-.|+.+++.+-........ .+. ..+. ..+.++++++.+.++
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l 418 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYF 418 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeE
Confidence 2221 1234 778888888876665543110 111 1122 246788888877555
Q ss_pred EEEec
Q 009763 467 YQVAS 471 (526)
Q Consensus 467 ~~~~~ 471 (526)
|-++.
T Consensus 419 ~ald~ 423 (488)
T cd00216 419 RAFDA 423 (488)
T ss_pred EEEEC
Confidence 55543
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=6.1e-07 Score=88.44 Aligned_cols=198 Identities=13% Similarity=0.220 Sum_probs=132.0
Q ss_pred CCeEEEEecCCC--CEEEEEeCCCcEEEEeCCCCcE--EEEecccccceeEEEEec-CCCEEEEEe----CCCcEEEEeC
Q 009763 224 PGIVSLDIHYSK--DVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVT-EGDLFLTGS----ADKTVRVWQG 294 (526)
Q Consensus 224 ~~I~~~~~s~~~--~~l~t~~~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~-~~~~l~s~s----~dg~i~iwd~ 294 (526)
..+.|+++..+. .++++|..+|.|.+-......- .....+|....++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 467788876644 4889999999999987654322 234557888899999998 566777763 3678999999
Q ss_pred CCCC-ceeeeEeccc-CccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCeeEEEEcc-CCc
Q 009763 295 SEDG-NYDCKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP-DGL 370 (526)
Q Consensus 295 ~~~~-~~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 370 (526)
.+.- .......+.+ ......+++|..+.+.+++|.....+.++|++... ....+. ...+..+.+.| .++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-------Tk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-------TKYVQGITVDPFSPN 209 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh-------hhhcccceecCCCCC
Confidence 8751 1111112222 33456688888888899999999999999998432 111221 12466778888 777
Q ss_pred EEEEEeCCCcEEEEE-CCCC-ceeeEecCCC----CCeEEEEECCCC-CEEEEEeCCc--EEEEEcCC
Q 009763 371 ILGTGTSEALVKIWD-VKSQ-ANVAKFDGHV----GAVTAISFSENG-YYLATAAHDG--VKLWDLRK 429 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd-~~~~-~~~~~~~~~~----~~i~~l~~s~~~-~~l~~~~~d~--i~iwd~~~ 429 (526)
++++-. ||.|.+|| .+.- .++..+.... ..+..++|.|.. ..+++...+. |++||+..
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 777655 99999999 4432 2233332222 248999999953 3556666664 99999863
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.16 E-value=0.0023 Score=60.58 Aligned_cols=226 Identities=16% Similarity=0.206 Sum_probs=129.8
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec----
Q 009763 275 TEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD---- 350 (526)
Q Consensus 275 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---- 350 (526)
..++.|+.|+.+| +.+++..... ...... +...|..+...|+-+.+++-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~--~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS--KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc--cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3577899999998 8999983322 122211 233499999998877776664 49999999876544431100
Q ss_pred -----CCCCCCCCCeeEEE--EccCC-cEEEEEeCCCcEEEEECCCC-----ceeeEecCCCCCeEEEEECCCCCEEEEE
Q 009763 351 -----AGTDGRPEGYTSAA--FHPDG-LILGTGTSEALVKIWDVKSQ-----ANVAKFDGHVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 351 -----~~~~~~~~~v~~~~--~~~~~-~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 417 (526)
.........+...+ -...+ ..|+++ ....|.+|..... +....+. -...+..++|. +..++.|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEE
Confidence 00001123344444 11233 444444 4558888877653 3445554 34678999997 5688888
Q ss_pred eCCcEEEEEcCCCccceEEecCCC----------CCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCC
Q 009763 418 AHDGVKLWDLRKLKNFRSFESSDS----------ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS 486 (526)
Q Consensus 418 ~~d~i~iwd~~~~~~~~~~~~~~~----------~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~ 486 (526)
..++..+.|+.++.....+..... ..++..+.. +++.+|++. ++ +.+.+.. +.......-.+
T Consensus 155 ~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~~g~fv~~~-G~~~r~~~i~W---- 227 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DNIGVFVNKN-GEPSRKSTIQW---- 227 (275)
T ss_pred eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cceEEEEcCC-CCcCcccEEEc----
Confidence 888899999997665444322211 123333333 345666654 44 4444431 11111112222
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 487 GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 487 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
...+.++++ ...||+..+. +.|-||++.+++
T Consensus 228 -~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 228 -SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred -CCchhEEEE--ECCEEEEECC-CEEEEEECcCCc
Confidence 335566666 3457777765 559999998764
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.15 E-value=0.00065 Score=69.16 Aligned_cols=211 Identities=12% Similarity=0.091 Sum_probs=124.1
Q ss_pred cCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC----CcEEEEeCCCCCceeeeEec
Q 009763 232 HYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 232 s~~~~~l~-t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~ 306 (526)
+++|+.+. +.-..+.+.+.|..+.+....+.-- +....+.++++|.++++.+.+ +++..-+..+. .....+
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvf 276 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVF 276 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEE
Confidence 34554332 2233456777777777666665532 234667889999988877642 22333322211 111111
Q ss_pred ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC-----CeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CCc
Q 009763 307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EAL 380 (526)
Q Consensus 307 ~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~ 380 (526)
.- ..+ -.+.++|++... .++.|.+.|..+ ...+..+... .....+.++|||+++++++. +.+
T Consensus 277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG------KsPHGV~vSPDGkylyVanklS~t 344 (635)
T PRK02888 277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP------KNPHGVNTSPDGKYFIANGKLSPT 344 (635)
T ss_pred ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC------CCccceEECCCCCEEEEeCCCCCc
Confidence 00 000 023447777665 367899999988 3444444322 35678999999998777654 789
Q ss_pred EEEEECCCCce------------eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCC----------CccceEEe
Q 009763 381 VKIWDVKSQAN------------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK----------LKNFRSFE 437 (526)
Q Consensus 381 i~iwd~~~~~~------------~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~----------~~~~~~~~ 437 (526)
|.|+|+.+.+. +....-.. .....+|.++|+...+..-|. |..||+.+ ...+..+.
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 99999987553 33333222 335678999998887777787 99999876 22333333
Q ss_pred cCCCCCCeeEEEE------cCCCCEEEEEeC
Q 009763 438 SSDSETPTNSVDF------DHSGSYLAVASA 462 (526)
Q Consensus 438 ~~~~~~~i~~i~~------s~~~~~l~~~~~ 462 (526)
.+ ..+-.+.- .|+|+||++.+.
T Consensus 424 V~---y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 424 VH---YQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CC---CccceeeecCCCcCCCCCCEEEEccc
Confidence 32 22222332 678888887653
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=1.4e-06 Score=86.03 Aligned_cols=249 Identities=14% Similarity=0.225 Sum_probs=148.4
Q ss_pred cceeEEEEecC--CCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC-CCEEEEEE----CCCeEEEEe
Q 009763 266 KKVTSVKFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTAS----LDNTWCFYD 338 (526)
Q Consensus 266 ~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s----~dg~i~iwd 338 (526)
..+.|+++.-+ ...+++|..+|.|.+-.+..... .......+|..+.++++|++- .+.|+.|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44667776543 34688899999999988765421 122334578889999999984 45565552 356799999
Q ss_pred CCCCeE--EEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc-eeeEecCCCCCeEEEEECC-CCCEE
Q 009763 339 LSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSE-NGYYL 414 (526)
Q Consensus 339 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~-~~~~l 414 (526)
+.++-. ........ +......+++|..+.+++.+|.....+.++|+|... ....+ ....+..+.+.| .+.++
T Consensus 136 i~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCce
Confidence 988722 11111110 123456688999899999999999999999998432 22222 233566778888 77888
Q ss_pred EEEeCCcEEEEE-cCCCccc-eEEecCC--CCCCeeEEEEcCCCC-EEEEEeCC---eEEEEEecccCc-----ce---e
Q 009763 415 ATAAHDGVKLWD-LRKLKNF-RSFESSD--SETPTNSVDFDHSGS-YLAVASAD---IRVYQVASVKAD-----WN---C 478 (526)
Q Consensus 415 ~~~~~d~i~iwd-~~~~~~~-~~~~~~~--~~~~i~~i~~s~~~~-~l~~~~~d---i~v~~~~~~~~~-----~~---~ 478 (526)
++..++-|.+|| .++.+.. ..+.... ....+..++|.|... .+++...+ |+.|++...... .. .
T Consensus 212 cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 212 CSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred eccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 887744499999 5554432 2222111 123488899999653 44455555 667766432111 11 1
Q ss_pred eeeecCC--CCCcceEEEEEcCCC--CEEEEEeCCCcEEEeeCCC
Q 009763 479 IKTFPDL--SGTGKATCVKFGPDA--KYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 479 ~~~~~~~--~~~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~l~~ 519 (526)
...++.. ..-..|.+..|++.. ....++-..-.+.-|++..
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 1111111 112467777887744 2344444445555555543
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.15 E-value=0.0063 Score=57.48 Aligned_cols=260 Identities=12% Similarity=0.141 Sum_probs=149.5
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe----------CCCcEEEEeCCCCCceeeeEecccCc----
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKDHT---- 310 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~h~---- 310 (526)
+.++|+|.++++.+..+.. +-.-.+..+|+++.+++++ ..-.|.+||..+......+..-..|.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877763 2334467799999888753 23468999998853212221111111
Q ss_pred cceEEEEEecCCCEEEEEE--CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECC
Q 009763 311 AEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK 387 (526)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~ 387 (526)
.....+.++.++++++... --.+|.|.|+..++.+..+... -|....| ...-|.+-+.||.+....+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P---------GC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP---------GCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT---------SEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC---------CEEEEEecCCCceEEEecCCceEEEEEC
Confidence 1223457788999877754 3567999999999998888632 1333334 22346677789999988887
Q ss_pred -CCceeeE----ecCCCCCe-EEEEECCCC-CEEEEEeCCc-EEEEEcCCCcc--ceEEecCC--------CCCCeeEEE
Q 009763 388 -SQANVAK----FDGHVGAV-TAISFSENG-YYLATAAHDG-VKLWDLRKLKN--FRSFESSD--------SETPTNSVD 449 (526)
Q Consensus 388 -~~~~~~~----~~~~~~~i-~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~--------~~~~i~~i~ 449 (526)
.|+...+ |.....++ ..-++...+ .+++ -+..| |+-.|+..... ...+.... ..+...-++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 4554322 22222222 233344443 4444 44555 88877765442 12222110 012344577
Q ss_pred EcCCCCEEEEEeC--------C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC-EEEEE-eCCCcEEEeeC
Q 009763 450 FDHSGSYLAVASA--------D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVG-SMDRNLRVFGL 517 (526)
Q Consensus 450 ~s~~~~~l~~~~~--------d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~v~iw~l 517 (526)
+++....|++--. + -.||.++. .+.+.+..+.. ...+.++..+.+.+ +|++. ..++.|.+||.
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~--~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL--KTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEET--TTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEEC--CCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 7776555554211 1 56776655 34455555543 34677999998776 56554 45789999999
Q ss_pred CCCC
Q 009763 518 PGND 521 (526)
Q Consensus 518 ~~~~ 521 (526)
.+++
T Consensus 320 ~tGk 323 (342)
T PF06433_consen 320 ATGK 323 (342)
T ss_dssp TT--
T ss_pred cCCc
Confidence 8765
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.0063 Score=54.32 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=91.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceE
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (526)
..+++.|+..+.+.-.|..+|+.+..-. -...|-+-+.- -|++++.|+..|.+++.++.++......... +.|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----ETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh----hhhc
Confidence 4578888889999999999988866432 12233332222 4778999999999999999997433332222 1222
Q ss_pred -EEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECC
Q 009763 315 -AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK 387 (526)
Q Consensus 315 -~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~ 387 (526)
.....+++..+..++.|++.+..|..+..++...+..+ ....+-++.| ++.++++ ...|.|.--..+
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-----~~f~sP~i~~g~~sly~a-~t~G~vlavt~~ 165 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-----GTFVSPVIAPGDGSLYAA-ITAGAVLAVTKN 165 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-----ceeccceecCCCceEEEE-eccceEEEEccC
Confidence 23346789999999999999999999999888865331 1223334555 4444443 344554444433
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.10 E-value=0.0013 Score=65.02 Aligned_cols=243 Identities=15% Similarity=0.166 Sum_probs=133.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc----------------------------------------eeeeEec
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN----------------------------------------YDCKHTL 306 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~----------------------------------------~~~~~~~ 306 (526)
.|+.+.|.++..-|++|...|.|.||.+..... +.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478899999888899999999999986432211 1122223
Q ss_pred ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC---CCCCCCCeeEEEEcc-----CC---cEEEEE
Q 009763 307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---TDGRPEGYTSAAFHP-----DG---LILGTG 375 (526)
Q Consensus 307 ~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~-----~~---~~l~~g 375 (526)
....++|++++.+ +=.+++.|..+|.+.|.|++....+..-.... .......++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346789999987 55699999999999999999888877744221 112345678888863 33 578899
Q ss_pred eCCCcEEEEECCC---Ccee----eEecCCCCCeEEEE-ECCC---------------------CCEEEEEeCCcEEEEE
Q 009763 376 TSEALVKIWDVKS---QANV----AKFDGHVGAVTAIS-FSEN---------------------GYYLATAAHDGVKLWD 426 (526)
Q Consensus 376 ~~dg~i~iwd~~~---~~~~----~~~~~~~~~i~~l~-~s~~---------------------~~~l~~~~~d~i~iwd 426 (526)
+..|.+.+|.+.- +... .....+.++|..+. |+.+ ..++++++...++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998741 1111 11123455555554 3211 1256677777799999
Q ss_pred cCCCccceEEecCCCCCCeeEEEEc-----CCCCEEEEEeCC--eEEEEEecccCcceeeeeecCC--CCCcceEEEEEc
Q 009763 427 LRKLKNFRSFESSDSETPTNSVDFD-----HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFG 497 (526)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~i~~i~~s-----~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s 497 (526)
..+.+..+..... ......+.+- ..+..|++-..+ +++|.+ ...+.+...... .+...+....++
T Consensus 242 ~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL----P~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 242 PPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL----PSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET----TT--EEEEEE-SS---HHHHTT-EE-
T ss_pred CCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEEC----CCchHhhcccCCCccccccccccEEC
Confidence 9887776555421 2233344442 355666666666 888887 444555444332 112344567788
Q ss_pred CCCCEEEEEeCCCcEEEeeC
Q 009763 498 PDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 498 ~~~~~l~s~~~dg~v~iw~l 517 (526)
++|..++-.+. ..+.+|.+
T Consensus 316 ~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 316 RNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp TTS-EEEE-SS-SEEEEEEE
T ss_pred CCCCEEEEeCc-ccEEEEEE
Confidence 89997776653 34444443
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0035 Score=62.25 Aligned_cols=221 Identities=15% Similarity=0.123 Sum_probs=147.7
Q ss_pred EEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC---CCcEEEEeCCCCCceee
Q 009763 227 VSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 227 ~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~ 302 (526)
..+++++.+. .+++...++.|.+.|..+.+......--. ....+++++++..+..+.. ++++.+.|..+. ..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eE
Confidence 4667778777 55555567899999987777666554222 5678999999987776655 678888887765 34
Q ss_pred eEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC---
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--- 378 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--- 378 (526)
......-..+ ..+++.|+|+.++... .++.+.+.|........ -...........-..+.+.|+|..+++....
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 4443322233 8999999999766665 78999999977665553 1111011222345678999999876665544
Q ss_pred CcEEEEECCCCceeeEecCCCC-CeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEecCCC-CCCeeEEEEcCC
Q 009763 379 ALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDS-ETPTNSVDFDHS 453 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~-~~~i~~i~~s~~ 453 (526)
+.+...|..++.....-..-.. ....+.++|+|..+.+.... + +.+.|..+......+..... ...+..+++.+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 5899999988876655211111 46678999999998888655 3 99999988777766554322 222445555443
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.04 E-value=0.0074 Score=57.13 Aligned_cols=226 Identities=18% Similarity=0.191 Sum_probs=129.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE-------
Q 009763 233 YSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH------- 304 (526)
Q Consensus 233 ~~~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------- 304 (526)
..++.|+.|+.+| +.+|+... ........ ...|..+...++-+.|++-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999888 89999833 33333322 33399999999877766654 4999999986642211000
Q ss_pred ----ecccCccceEEEE--EecCCCEEEEEECCCeEEEEeCCCC-----eEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 305 ----TLKDHTAEVQAVT--VHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 305 ----~~~~h~~~v~~l~--~~p~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
........+...+ -...+...+.+.....|.+|..... +....+. .+..+.+++|. ++.++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~------lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS------LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE------cCCCcEEEEEe--CCEEE
Confidence 0011223344444 1224444444555568888887653 3334443 23578899998 55677
Q ss_pred EEeCCCcEEEEECCCCceeeEecCC------------CCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccce--EEecC
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDGH------------VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESS 439 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~--~~~~~ 439 (526)
.|..+ ...+.|+.++.....+... ..++..+... ++.+|++.. +.-.+.|. .|+..+ .+..
T Consensus 153 v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~-~~g~fv~~-~G~~~r~~~i~W- 227 (275)
T PF00780_consen 153 VGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD-NIGVFVNK-NGEPSRKSTIQW- 227 (275)
T ss_pred EEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEec-ceEEEEcC-CCCcCcccEEEc-
Confidence 77654 4788899876554333211 1234444443 455665432 22223333 343332 3333
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeec
Q 009763 440 DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~ 483 (526)
...+.++.+ ...||++.+.+ +.||++ .+...+..+.
T Consensus 228 --~~~p~~~~~--~~pyli~~~~~~iEV~~~----~~~~lvQ~i~ 264 (275)
T PF00780_consen 228 --SSAPQSVAY--SSPYLIAFSSNSIEVRSL----ETGELVQTIP 264 (275)
T ss_pred --CCchhEEEE--ECCEEEEECCCEEEEEEC----cCCcEEEEEE
Confidence 235556666 35688887777 999998 4455565554
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.03 E-value=0.013 Score=55.39 Aligned_cols=246 Identities=15% Similarity=0.147 Sum_probs=141.2
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEecccc---c----ceeEEEEecCCCEEEEE--eCCC
Q 009763 227 VSLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHS---K----KVTSVKFVTEGDLFLTG--SADK 287 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~----------~dg~v~vwd~~~~~~~~~~~~h~---~----~V~~l~~~~~~~~l~s~--s~dg 287 (526)
-.+.++|+++.+++++ ..-.|.+||..+-.....+.-.. . ....+.++.++++++.. +--.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466789999887653 24469999999987766543221 1 12345677788876654 3345
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCC-CCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
+|.|-|+... +.+..+.. ..+..+--. .++-|.+-|.||++.-..+. .|+................+..-.+.
T Consensus 119 SVtVVDl~~~---kvv~ei~~--PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 119 SVTVVDLAAK---KVVGEIDT--PGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp EEEEEETTTT---EEEEEEEG--TSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred eEEEEECCCC---ceeeeecC--CCEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence 6888888775 44444331 112222212 23568899999999999987 45544332211111111122334445
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCcee--eEecC----------CCCCeEEEEECCCCCEEEEEe--------CC-c--EE
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQANV--AKFDG----------HVGAVTAISFSENGYYLATAA--------HD-G--VK 423 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~----------~~~~i~~l~~s~~~~~l~~~~--------~d-~--i~ 423 (526)
..+..++--+.+|.|+-.|+...... ..+.. ..+.-.-+++++....|++.- .+ + |.
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 55555555678999999998765422 12210 122334577777555554421 12 2 88
Q ss_pred EEEcCCCccceEEecCCCCCCeeEEEEcCCCC-EEEEEeC-C--eEEEEEecccCcceeeeeecCC
Q 009763 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTFPDL 485 (526)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~ 485 (526)
+||+.+.+.+..+.. ..++.+|..+.+.+ +|++.+. + +.|||. .+.+.+......
T Consensus 273 v~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~----~tGk~~~~~~~l 331 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA----ATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEET----TT--EEEEE---
T ss_pred EEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeC----cCCcEEeehhcc
Confidence 999999999999987 35688999998776 5554433 3 888887 455666666543
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00011 Score=75.12 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=96.4
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|..|+++..-|.|.+|....-+.++....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 67899999988999999999999999988777777778999999999999999999999999999998764332222222
Q ss_pred cccCc--cce--EEEEEecCCC------EEEEEECCCeEE-EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 306 LKDHT--AEV--QAVTVHATNK------YFVTASLDNTWC-FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 306 ~~~h~--~~v--~~l~~~p~~~------~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
+ .|. ..+ +|...++++. ..++.+.+..+- .++.+......... -.-.|+|..++.
T Consensus 142 ~-~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-------------ksgv~~g~~F~~ 207 (1416)
T KOG3617|consen 142 M-QHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-------------KSGVPKGTEFLF 207 (1416)
T ss_pred h-hhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-------------ccCCCCCcEEEE
Confidence 2 232 223 3444455532 122333332221 22221110000000 011357888888
Q ss_pred EeCCCcEEEEECC
Q 009763 375 GTSEALVKIWDVK 387 (526)
Q Consensus 375 g~~dg~i~iwd~~ 387 (526)
++.+|+|+..|-.
T Consensus 208 ~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 208 AGKSGTVYYVDQN 220 (1416)
T ss_pred EcCCceEEEEcCC
Confidence 8899999888843
No 361
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=3.5e-06 Score=81.25 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=45.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIV 51 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 51 (526)
+.|+||.+++.+||++| |||+||+.||..|+...++||.|.+++...+|.
T Consensus 27 l~C~IC~d~~~~Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr 76 (397)
T TIGR00599 27 LRCHICKDFFDVPVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLR 76 (397)
T ss_pred cCCCcCchhhhCccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccCc
Confidence 57999999999999986 999999999999999989999999988765544
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.029 Score=58.14 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccc-cceeE----------EEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVTS----------VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~-~~V~~----------l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
+..|++++.++.|+-+|..+|+.+-.+.... ..+.. +++ .+..++.++.|+.+.-.|..++. .+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk---~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK---VV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC---EE
Confidence 5677777778899999999999887765321 11111 122 23467778889999999998873 33
Q ss_pred Eecc--cCccceEEEEEec--CCCEEEEEE------CCCeEEEEeCCCCeEEEEeecCCCCC------------------
Q 009763 304 HTLK--DHTAEVQAVTVHA--TNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTDG------------------ 355 (526)
Q Consensus 304 ~~~~--~h~~~v~~l~~~p--~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~------------------ 355 (526)
.... .+... ..+.-.| .+..++.+. .+|.|.-+|.++|+.+-.+.......
T Consensus 144 W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 3222 11110 0111112 133445443 26899999999999887765321110
Q ss_pred ---------CCCCeeEEEEccCCcEEEEEeCC-----C-----------cEEEEECCCCceeeEecCCCC---------C
Q 009763 356 ---------RPEGYTSAAFHPDGLILGTGTSE-----A-----------LVKIWDVKSQANVAKFDGHVG---------A 401 (526)
Q Consensus 356 ---------~~~~v~~~~~~~~~~~l~~g~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~---------~ 401 (526)
....-..+.+.+...+++.+..+ + .|.-.|+++++..-.++.... .
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 00111245677767777776632 2 567778889988777653211 1
Q ss_pred eEEEEECCCCC---EEEEEeCCc-EEEEEcCCCccc
Q 009763 402 VTAISFSENGY---YLATAAHDG-VKLWDLRKLKNF 433 (526)
Q Consensus 402 i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~ 433 (526)
..-+.+..+|+ .++.+..+| +.+.|.++++.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 12223334665 677888888 999999998875
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0018 Score=62.88 Aligned_cols=177 Identities=20% Similarity=0.168 Sum_probs=108.7
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE---EccC----CcEEEEEeC---------C-CcEEEEECCCC----c
Q 009763 332 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA---FHPD----GLILGTGTS---------E-ALVKIWDVKSQ----A 390 (526)
Q Consensus 332 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~----~~~l~~g~~---------d-g~i~iwd~~~~----~ 390 (526)
+.|++.|..+...+..+.... ...+.+++ +..+ ..+|++|+. . |.|.+|++... .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~----~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~ 77 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP----NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNF 77 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET----TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCC----CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccce
Confidence 357778877777666655321 23344443 3332 467777753 2 88999999884 1
Q ss_pred eeeEe--cCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEE
Q 009763 391 NVAKF--DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV 466 (526)
Q Consensus 391 ~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v 466 (526)
.+..+ ....++|++++-. +|+ |+++....|.+|++...+.+...........+.++... +.++++|+.. +.+
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEEEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 22211 2246789998876 444 77777667999999887722222222223455555554 6699888765 888
Q ss_pred EEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 467 YQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+.++........+..-. ....++++.|-.+++.++.+..+|.|.++..+.
T Consensus 154 ~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88765333333333321 245688998886667999999999999999874
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.96 E-value=0.02 Score=55.23 Aligned_cols=275 Identities=13% Similarity=0.087 Sum_probs=129.7
Q ss_pred EecCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec
Q 009763 230 DIHYSKDVIATGGV-DT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 230 ~~s~~~~~l~t~~~-dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (526)
+|.++|+.|+.++. || .+.+.|+.+++..+--.+-........++++.+.++-......|+-.|+.+... ..+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 46788876655554 55 466668888776554443223333566778888776555566888889888532 233333
Q ss_pred ccCccceEEEEEe--cCCCEEEEEE----------------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 307 KDHTAEVQAVTVH--ATNKYFVTAS----------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 307 ~~h~~~v~~l~~~--p~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
....+-...|. .++..++-.- ....|.-.|+.+|+....+.. ...+..
T Consensus 121 --p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~------~~wlgH 192 (386)
T PF14583_consen 121 --PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED------TDWLGH 192 (386)
T ss_dssp ---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE------SS-EEE
T ss_pred --CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec------CccccC
Confidence 33444344453 3455543321 113466778888876666643 246788
Q ss_pred EEEcc-CCcEEEEEeCC---C-cEEEEECCC-CceeeEecCC--CCCeEEEEECCCCCEEEEEeC--C---c-EEEEEcC
Q 009763 363 AAFHP-DGLILGTGTSE---A-LVKIWDVKS-QANVAKFDGH--VGAVTAISFSENGYYLATAAH--D---G-VKLWDLR 428 (526)
Q Consensus 363 ~~~~~-~~~~l~~g~~d---g-~i~iwd~~~-~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~--d---~-i~iwd~~ 428 (526)
+.|+| |..+|+-+.+. . .-+||-+++ +.....+..+ ...+..=-|.|+|..|.--+. + . |.-+|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99999 66666665432 2 125665543 3333333322 224455578999987654322 2 2 7778888
Q ss_pred CCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--e--------------EEEEEecccCcceeeeee-------cCC
Q 009763 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I--------------RVYQVASVKADWNCIKTF-------PDL 485 (526)
Q Consensus 429 ~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i--------------~v~~~~~~~~~~~~~~~~-------~~~ 485 (526)
+++....... .....+..+++|++++-=+.+ + -||.++........+... .++
T Consensus 273 t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 273 TGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred CCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 8765433322 234566668899998764443 2 223232222222222211 111
Q ss_pred CCCcceEEEEEcCCCCEEE-EEeCCCcEEEeeCC
Q 009763 486 SGTGKATCVKFGPDAKYIA-VGSMDRNLRVFGLP 518 (526)
Q Consensus 486 ~~~~~v~~~~~s~~~~~l~-s~~~dg~v~iw~l~ 518 (526)
. ...=....|+|||++++ ++...|...||-++
T Consensus 349 ~-q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 349 R-QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp S-STT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred C-ccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 0 01124578999999765 55567877777543
No 365
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.94 E-value=0.0073 Score=59.44 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=127.2
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-Eeccc----------------ccceeEEEEecCCCEEEEEeC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGH----------------SKKVTSVKFVTEGDLFLTGSA 285 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~-~~~~h----------------~~~V~~l~~~~~~~~l~s~s~ 285 (526)
...+....|+|+|+.+|... ++.|.+++..++...+ +..|- -+.-..+-|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 35678899999999999886 6789999988774443 22220 112356889999998887643
Q ss_pred C-CcEE-----------------------------------EEeCCCCCceeeeEec---ccCccceEEEEEecCCCEEE
Q 009763 286 D-KTVR-----------------------------------VWQGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKYFV 326 (526)
Q Consensus 286 d-g~i~-----------------------------------iwd~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~ 326 (526)
| ..|+ |+|+.++... .+... ..-...+..+.|.+++..|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEE
Confidence 2 2222 2333332110 01101 12334577888988888333
Q ss_pred E--EECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc-cC-CcEEEEEeCCCc--EEEEECCCCceeeEecC
Q 009763 327 T--ASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH-PD-GLILGTGTSEAL--VKIWDVKSQANVAKFDG 397 (526)
Q Consensus 327 s--~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~ 397 (526)
. ...+ ..+.++|..++......... ..+.-.......|. ++ +.++.....+|. |.+++...+. ...+..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~ 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc
Confidence 3 3333 23667788776554333322 11222333455654 54 455666667775 4555555544 335554
Q ss_pred CCCCeEE-EEECCCCCEEE-EEeCCc-----EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeC
Q 009763 398 HVGAVTA-ISFSENGYYLA-TAAHDG-----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 398 ~~~~i~~-l~~s~~~~~l~-~~~~d~-----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
..-.|+. +.+++++..|. ++..+. |..-++..+.....+.... ..-..+.|+|+|++++....
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~--~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED--GDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS--STTEEEEE-TTSSEEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC--CCceEEEECCCCCEEEEEEc
Confidence 5556755 67788766544 554421 5555666233344444432 11269999999999986543
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.029 Score=55.77 Aligned_cols=258 Identities=17% Similarity=0.184 Sum_probs=159.5
Q ss_pred EEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe-CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCE-
Q 009763 247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY- 324 (526)
Q Consensus 247 v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~- 324 (526)
+.+++..+......+..+. ....+...+++..+.... ....+...+.. .. ........-...-..+++++.+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~v 88 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKV 88 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeE
Confidence 5566655555544444333 456677788885444333 22245555443 21 111111111134457788888874
Q ss_pred EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC---CCcEEEEECCCCceeeEecCCCCC
Q 009763 325 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAKFDGHVGA 401 (526)
Q Consensus 325 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~ 401 (526)
++....++.|.+.|..+.......... .....+++++++..++++.. ++.+.+.|..+++..........+
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~~vG------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P 162 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSIPVG------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP 162 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEeeec------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc
Confidence 444445689999998887777766532 15678999999977777765 689999999988887775443344
Q ss_pred eEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccce-EEe-cCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccC
Q 009763 402 VTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFR-SFE-SSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKA 474 (526)
Q Consensus 402 i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~-~~~-~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~ 474 (526)
..++++|+|..+++...+ + |.++|........ ... ..........+.++|+|.++++.... ..+..++....
T Consensus 163 -~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 163 -TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred -ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 899999999987777643 4 9999977655443 100 01113456789999999987776544 45655543222
Q ss_pred cceeeee-ecCCCCCcceEEEEEcCCCCEEEEEeCC-CcEEEeeCCC
Q 009763 475 DWNCIKT-FPDLSGTGKATCVKFGPDAKYIAVGSMD-RNLRVFGLPG 519 (526)
Q Consensus 475 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~v~iw~l~~ 519 (526)
..... .... .. ....+.++|+|.++.+.... +.+.+-|...
T Consensus 242 --~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 242 --NVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred --eEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 22221 1111 12 45678899999998887444 7777777654
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.0093 Score=56.71 Aligned_cols=221 Identities=13% Similarity=0.129 Sum_probs=127.6
Q ss_pred EEecCCC-EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 009763 272 KFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350 (526)
Q Consensus 272 ~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (526)
.|.++.. ++.+--..+.|.-|+..++. ...+. +.+.+.++..-..+..|+++.. .+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~----~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK----KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc----eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 4555555 34444556778888776532 22222 2233444444434445555433 456677666655444433
Q ss_pred CCCCCCCCCeeEEEEccCCcEEEEEeC-----------CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC
Q 009763 351 AGTDGRPEGYTSAAFHPDGLILGTGTS-----------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 351 ~~~~~~~~~v~~~~~~~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 419 (526)
..........+.+.+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|||+++.|..+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 222233456778899999987766443 133444454 45555555555566789999999998888876
Q ss_pred Cc--EEEEEcCC--Cc---cceEEecCCCCCCeeEEEEcCCCCEEEEEeC---CeEEEEEecccCcceeeeeecCCCCCc
Q 009763 420 DG--VKLWDLRK--LK---NFRSFESSDSETPTNSVDFDHSGSYLAVASA---DIRVYQVASVKADWNCIKTFPDLSGTG 489 (526)
Q Consensus 420 d~--i~iwd~~~--~~---~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~---di~v~~~~~~~~~~~~~~~~~~~~~~~ 489 (526)
.. |.-|++.. +. ....+.........-.++.+.+|.+.+++.. .+.+|+. .+..+..+... ..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP--~~ 255 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLP--VK 255 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC-----CCcEEEEEECC--CC
Confidence 53 77776652 11 1111222222456667888889988865444 3677764 35666665553 35
Q ss_pred ceEEEEEc-CCCCEEEEEe
Q 009763 490 KATCVKFG-PDAKYIAVGS 507 (526)
Q Consensus 490 ~v~~~~~s-~~~~~l~s~~ 507 (526)
.+++++|. ++.+.|++.+
T Consensus 256 ~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 256 RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCccceEeCCCcCEEEEEe
Confidence 78888885 4556555444
No 368
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=8.9e-06 Score=70.53 Aligned_cols=56 Identities=27% Similarity=0.422 Sum_probs=47.7
Q ss_pred CcccccCCCCCC----ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccccCCC
Q 009763 1 MNCSISGEVPEE----PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGK 57 (526)
Q Consensus 1 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 57 (526)
++|+++-..-.+ .|+.| ||+||.+.|.||+|.--+.||+||+||+..|||+++.+.
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~-sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGG 281 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRP-SGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGG 281 (303)
T ss_pred eecccchhhhcCccceEEecc-CCcEeeHHHHHHhccccccccCCCCcCcccceEeeeccc
Confidence 468887665444 46775 999999999999999999999999999999999998743
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.0011 Score=66.14 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=95.3
Q ss_pred CccceEEEEEecCCCEEEEEE---CC-CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCCC--cE
Q 009763 309 HTAEVQAVTVHATNKYFVTAS---LD-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEA--LV 381 (526)
Q Consensus 309 h~~~v~~l~~~p~~~~l~s~s---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg--~i 381 (526)
-...+..-.|+|++..++..+ .. ..+.++|++++......... ..-..-.|+|||+.|+.. ..|| .|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~------g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN------GNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC------CccCCccCCCCCCEEEEEECCCCCccE
Confidence 345667778899887655442 22 46999999998876666422 233456899999766654 4455 46
Q ss_pred EEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
+++|+..+. ...+....+.-..-.|+|+|++++-.++. | |.++|...... ..+.... ..-..-.|+|+|+++
T Consensus 265 y~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~--~~~~~p~~SpdG~~i 340 (425)
T COG0823 265 YLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG--GGNSNPVWSPDGDKI 340 (425)
T ss_pred EEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC--CCCcCccCCCCCCEE
Confidence 777887666 33354444444467899999998887766 3 88888876655 3333321 222277899999999
Q ss_pred EEEeC
Q 009763 458 AVASA 462 (526)
Q Consensus 458 ~~~~~ 462 (526)
+..+.
T Consensus 341 ~~~~~ 345 (425)
T COG0823 341 VFESS 345 (425)
T ss_pred EEEec
Confidence 98774
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0033 Score=62.75 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=118.0
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEe---CC-CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEE-E
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGS---AD-KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-S 329 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s 329 (526)
+.....+..-...+..-+|+|++..++-.+ .. ..+.++++.++.. ..+..+.++ -..-.|+|+|+.|+.+ .
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~g~---~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFNGN---NGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceeeccCCc---cCCccCCCCCCEEEEEEC
Confidence 444455554556677788999888654432 22 3588999988643 333334444 3456799999876654 4
Q ss_pred CCCe--EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CC--cEEEEECCCCceeeEecCCCCCeEE
Q 009763 330 LDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFDGHVGAVTA 404 (526)
Q Consensus 330 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~ 404 (526)
.||. |.++|+..+.... +.. . ...-..=.|+|||+.++..+. .| .|.++|...... ..+....+.-..
T Consensus 258 rdg~~~iy~~dl~~~~~~~-Lt~--~---~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLPR-LTN--G---FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred CCCCccEEEEcCCCCccee-ccc--C---CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 5655 6677887776333 321 1 112225678999987776644 44 466666655443 333323233337
Q ss_pred EEECCCCCEEEEEeCC--c--EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 405 ISFSENGYYLATAAHD--G--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 405 l~~s~~~~~l~~~~~d--~--i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
-.|+|+|.+|+..+.. . |.+.|+.++...+.+.. ......-.|.++|..+...+..
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccC
Confidence 7899999999887742 2 77778776664333332 3344456778888887766544
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0058 Score=59.95 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=94.6
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC-------EEEEEECCCeEEEEeCCCCeE--EEEeec
Q 009763 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSSGIC--LTQVSD 350 (526)
Q Consensus 280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------~l~s~s~dg~i~iwd~~~~~~--~~~~~~ 350 (526)
|.++.....++-.|++.+ +.+....-|.. |+-+.+.|+++ .-+.|-.|..|.-||.+-... +.....
T Consensus 349 l~~~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred eeCCCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 444555566777788876 66666665555 77777777653 234466788899999874322 111111
Q ss_pred CCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEc
Q 009763 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL 427 (526)
Q Consensus 351 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~ 427 (526)
. .-.......|++-..+| ++++|+.+|.|++||--.......+.+-..+|..+..+.+|++|++.+...+.+.|+
T Consensus 425 k-qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 425 K-QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred c-ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 1 11222345666666555 688999999999999733334445677778999999999999999888776666665
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.017 Score=54.88 Aligned_cols=219 Identities=13% Similarity=0.130 Sum_probs=129.4
Q ss_pred ecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc-c
Q 009763 231 IHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-D 308 (526)
Q Consensus 231 ~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~ 308 (526)
|.++.. ++.+--..+.|.-|+..+++... +. +.+.+.++.....+..|+++.. -+.+++...+.....+.... +
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 556555 55566667888889887664322 22 2233455554444545555433 36677765543212222221 1
Q ss_pred -CccceEEEEEecCCCEEEEEEC-----------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 309 -HTAEVQAVTVHATNKYFVTASL-----------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 309 -h~~~v~~l~~~p~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
-....+.+...|+|.+.+.... -|.++.+|. .+..+..+. .+-..-+.++|+||++.|+...
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-----~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-----DDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-----CcEEecCceEECCCCCEEEEEe
Confidence 1245678888999987765443 133444443 344444433 2223567899999998777775
Q ss_pred CC-CcEEEEECCC--C----c-eeeEecCCCCCeEEEEECCCCCEEEEEeCC--cEEEEEcCCCccceEEecCCCCCCee
Q 009763 377 SE-ALVKIWDVKS--Q----A-NVAKFDGHVGAVTAISFSENGYYLATAAHD--GVKLWDLRKLKNFRSFESSDSETPTN 446 (526)
Q Consensus 377 ~d-g~i~iwd~~~--~----~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~i~iwd~~~~~~~~~~~~~~~~~~i~ 446 (526)
.. +.|.-|++.. + + ....+....+..-.++...+|++.+++..+ +|.+|+.. ++.+..+..+ ...++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~t 258 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRPT 258 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCCc
Confidence 54 7788887752 1 1 112223345666778888888877655554 39999988 8888888876 35677
Q ss_pred EEEEc-CCCCEEEEEeC
Q 009763 447 SVDFD-HSGSYLAVASA 462 (526)
Q Consensus 447 ~i~~s-~~~~~l~~~~~ 462 (526)
+++|- ++.+.|++.+.
T Consensus 259 ~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 259 NPAFGGPDLNTLYITSA 275 (307)
T ss_pred cceEeCCCcCEEEEEec
Confidence 77774 44555555443
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.76 E-value=0.04 Score=52.14 Aligned_cols=277 Identities=11% Similarity=0.105 Sum_probs=131.4
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc--c---ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--H---SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~--h---~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
...+..|.|.....-+++|. .|.| +-..+.|+.-..... . .-...++.|.. ...+++| ..| +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCc-eEEEecCCC
Confidence 45789999996566666654 5543 222333333222111 1 12356777754 3345544 445 344444455
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
..+..+..-..-.+....+....++ ....++..|.|..- .+.|+.-..+.. .....+..+..++||.+++++..
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc
Confidence 5555443211222333444444444 33334455554332 223333222221 22356888889999999999876
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEc-CCCccceE--EecCCCCCCeeEEEEcCC
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL-RKLKNFRS--FESSDSETPTNSVDFDHS 453 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~-~~~~~~~~--~~~~~~~~~i~~i~~s~~ 453 (526)
.....-||.-...-...-......|..+.|.|++.+.+++ .++ |++=+. ........ .........+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 6666778764322222222345789999999998776665 555 777662 22111111 111112345889999999
Q ss_pred CCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 454 ~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
+...++|+...-++.. ...++|+........ ...+..+.|.++.+-++.| .+|.|.-|
T Consensus 244 ~~~wa~gg~G~l~~S~-DgGktW~~~~~~~~~--~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAVGGSGTLLVST-DGGKTWQKDRVGENV--PSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp S-EEEEESTT-EEEES-STTSS-EE-GGGTTS--SS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCEEEEeCCccEEEeC-CCCccceECccccCC--CCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 8888877776444443 445678776655443 5578889997665555554 68887655
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.75 E-value=0.013 Score=56.94 Aligned_cols=174 Identities=19% Similarity=0.196 Sum_probs=105.4
Q ss_pred CcEEEEeCCCCcEEEEecc-cccceeEEEEe---cC----CCEEEEEeC----------CCcEEEEeCCCC----Cceee
Q 009763 245 TNAVLFDRPSGQIVTTLSG-HSKKVTSVKFV---TE----GDLFLTGSA----------DKTVRVWQGSED----GNYDC 302 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~---~~----~~~l~s~s~----------dg~i~iwd~~~~----~~~~~ 302 (526)
+.|++.|..+.+.+..+.- ....+.+++.. .+ ..+|++|+. .|.|.++++... ..++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888877765542 22335555433 22 457777753 288999999873 22333
Q ss_pred eEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
+... ...++|++++-. ++ +++.+ .++.|.+|++...+ ....... .....+.++... ++++++|+....+
T Consensus 82 i~~~-~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~----~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFY----DSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEE-eecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhhee----cceEEEEEEecc--ccEEEEEEcccCE
Confidence 3333 357889999876 34 44444 34799999998887 4433321 111245555544 6699999988888
Q ss_pred EEEECCC-CceeeEe--cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcC
Q 009763 382 KIWDVKS-QANVAKF--DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 382 ~iwd~~~-~~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 428 (526)
.++..+. +..+..+ ......++++.|-+++..++++..++ +.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8875543 2222222 22345688888986667888888887 8888765
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.75 E-value=0.043 Score=55.43 Aligned_cols=238 Identities=16% Similarity=0.192 Sum_probs=124.1
Q ss_pred eeEEEEecCCCEEEEE-eCCC----cEEEEeCCCCCceeeeE-ecccCccceEEEEEecCCCEEEEEECCC---------
Q 009763 268 VTSVKFVTEGDLFLTG-SADK----TVRVWQGSEDGNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDN--------- 332 (526)
Q Consensus 268 V~~l~~~~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg--------- 332 (526)
+....++|+|++++.+ +..| .++++|+.++ +.+. .+.. .....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4467889999987755 3334 4999999886 3322 2221 1223499999988877766443
Q ss_pred --eEEEEeCCCCeEE--EEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC----CcEEEEECCCC----ceeeEecCCCC
Q 009763 333 --TWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQ----ANVAKFDGHVG 400 (526)
Q Consensus 333 --~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~----~~~~~~~~~~~ 400 (526)
.|+.|.+.+...- ..+... ........+..++|+++++..... ..+.+.|+..+ .....+.....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CcEEEEEECCCChHhCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 3788888776533 333211 111126678899999987764332 35788888764 22333332333
Q ss_pred Ce-EEEEECCCCCEEEEEeCC---c-EEEEEcCCCcc--ce-EEecCCCCCCeeEEEEcCCCCEEEEEe-CC----eEEE
Q 009763 401 AV-TAISFSENGYYLATAAHD---G-VKLWDLRKLKN--FR-SFESSDSETPTNSVDFDHSGSYLAVAS-AD----IRVY 467 (526)
Q Consensus 401 ~i-~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~--~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~-~d----i~v~ 467 (526)
.+ ..+... ++.+++....+ + |.-.++..... .. .+..+.....+..+.. .+.+|+... .+ ++++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence 33 334443 55555544443 2 66678877663 12 3333221223444444 455555443 33 7777
Q ss_pred EEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEE--EeC--CCcEEEeeCCCCC
Q 009763 468 QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV--GSM--DRNLRVFGLPGND 521 (526)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~--dg~v~iw~l~~~~ 521 (526)
++. ..+. ....... ..+.|..+...+++..+.. .|. -+.+..||+.+++
T Consensus 355 ~~~---~~~~-~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLD---DGKE-SREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT----TEE-EEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECC---CCcE-EeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 763 0222 2222221 1445666665555554332 222 2567777877664
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00015 Score=72.03 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=75.9
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccccee-EEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
..|.-+.|+|.-+++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||++|++|-.||+|++.|+..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~--- 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR--- 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc---
Confidence 468899999999999999999999999988 778888887777787 999999999999999999999999988742
Q ss_pred eEe-cccCccceEEEEEe
Q 009763 303 KHT-LKDHTAEVQAVTVH 319 (526)
Q Consensus 303 ~~~-~~~h~~~v~~l~~~ 319 (526)
+.. ...-...|.++.|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 222 12234566777665
No 377
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.72 E-value=7.6e-06 Score=74.34 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=48.0
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|.||.+.+..|||+| |||+||--||.+||..++.||.|--+.++.+|..-
T Consensus 24 LRC~IC~eyf~ip~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n 75 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNN 75 (442)
T ss_pred HHHhHHHHHhcCceecc-ccchHHHHHHHHHhccCCCCCceecccchhhhhhh
Confidence 35999999999999999 99999999999999999999999999998887643
No 378
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.7e-05 Score=75.63 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=49.8
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhc-----CCCCCCCCCCCcCccccccC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-----GKCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~ 55 (526)
|.|+||.+.|.-|+.+. |||+||=.||..|++.. ++||+|....++-||.+|.-
T Consensus 187 ~~CPICL~~~~~p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CcCCcccCCCCcccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 57999999999999995 99999999999999866 68999999999999999864
No 379
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.68 E-value=7.4e-05 Score=49.83 Aligned_cols=44 Identities=32% Similarity=0.577 Sum_probs=39.6
Q ss_pred cccccCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|.|..+.+.++++.| +||. |...++.++++...+||++.++++
T Consensus 4 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 4 ECPICFENPRDVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp B-TTTSSSBSSEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCccCCccCCceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 6999999999999997 9999 999999999999999999998765
No 380
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.055 Score=54.22 Aligned_cols=193 Identities=14% Similarity=0.182 Sum_probs=94.3
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCe-----eE
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY-----TS 362 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~ 362 (526)
.|.||+... ..+..+.-..+.|.++.|.. ...|++...||.+++||+.... .+... .......| ..
T Consensus 62 ~I~iys~sG----~ll~~i~w~~~~iv~~~wt~-~e~LvvV~~dG~v~vy~~~G~~---~fsl~-~~i~~~~v~e~~i~~ 132 (410)
T PF04841_consen 62 SIQIYSSSG----KLLSSIPWDSGRIVGMGWTD-DEELVVVQSDGTVRVYDLFGEF---QFSLG-EEIEEEKVLECRIFA 132 (410)
T ss_pred EEEEECCCC----CEeEEEEECCCCEEEEEECC-CCeEEEEEcCCEEEEEeCCCce---eechh-hhccccCcccccccc
Confidence 488887655 23333332227899999986 4566677899999999987443 22211 00111122 22
Q ss_pred EEEccCCcEEEEEeCCCcEEEEECCCCc-eeeEec---C-----CC-CCeEE-EEECCCCCEEEEEeCCc-EEEEEcCCC
Q 009763 363 AAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFD---G-----HV-GAVTA-ISFSENGYYLATAAHDG-VKLWDLRKL 430 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~---~-----~~-~~i~~-l~~s~~~~~l~~~~~d~-i~iwd~~~~ 430 (526)
..+..+|-.+.+ .++.+.+..-.... ....+. . +. ..... ..++.+....+....++ +.+.+-...
T Consensus 133 ~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 133 IWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence 233335533333 44555444322211 111111 0 00 00111 22333444444434433 553433221
Q ss_pred ccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCC
Q 009763 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 500 (526)
Q Consensus 431 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 500 (526)
+. +. ..+++..+++||+|+++|.-..++.+|-+...-. +....+... .......+.|.-+.
T Consensus 211 ~~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~--~~~~e~~~~-~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 211 KQ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS--EKLCEFDTD-SKSPPKQMAWCGND 271 (410)
T ss_pred cc---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc--ceeEEeecC-cCCCCcEEEEECCC
Confidence 11 11 1468999999999999999888766666543222 122222221 13355566665543
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.01 Score=62.94 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=94.6
Q ss_pred CEEEEE-eCCCcEEEEeCCCCcEEEEecccccc-eeEEEEec-----CCCEEEEEeCCCcEEEEeCCCCCceeeeE-ec-
Q 009763 236 DVIATG-GVDTNAVLFDRPSGQIVTTLSGHSKK-VTSVKFVT-----EGDLFLTGSADKTVRVWQGSEDGNYDCKH-TL- 306 (526)
Q Consensus 236 ~~l~t~-~~dg~v~vwd~~~~~~~~~~~~h~~~-V~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~- 306 (526)
++|+.. .....|+-.|+..|+.+..+..|... |..++=.. +....+.|-.++.+..||.+-.+. +++. ..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc
Confidence 344433 34578888999999999999877654 55543221 133466777888999999876542 2221 11
Q ss_pred -ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEE
Q 009763 307 -KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (526)
Q Consensus 307 -~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 385 (526)
........|++-.. ..+||+|+.+|.|++||-- |+.-.+. .++...+|..++.+.||+++++.+ +..+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~-g~~AKT~----lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDRL-GKRAKTA----LPGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccCCCceEEEecC-CceEEEEeCCCcEEeeccc-chhhhhc----CCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 12334567776664 4479999999999999943 3222222 224457999999999999887765 56677777
Q ss_pred C
Q 009763 386 V 386 (526)
Q Consensus 386 ~ 386 (526)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 382
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.64 E-value=6.2e-05 Score=47.74 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=21.6
Q ss_pred ccccCCCCCC----ceEeCCCCeeeeHHHHHHHHHhc
Q 009763 3 CSISGEVPEE----PVVSKNSGLLFEKRLIERHILDY 35 (526)
Q Consensus 3 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 35 (526)
|+|+-| ..+ |++-| +||+|+|.+|++.++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 777 99997 99999999999999965
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.64 E-value=0.015 Score=60.74 Aligned_cols=233 Identities=14% Similarity=0.238 Sum_probs=125.5
Q ss_pred cCCCCEEEEEeCCC------cEEEEeCCCCcEEE--EecccccceeEEEEecCCCEEEEEeCC------CcEEEEeCCCC
Q 009763 232 HYSKDVIATGGVDT------NAVLFDRPSGQIVT--TLSGHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQGSED 297 (526)
Q Consensus 232 s~~~~~l~t~~~dg------~v~vwd~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~d------g~i~iwd~~~~ 297 (526)
+..+.+++.||.++ .+..||..++.-.. .+... ..-.+++.. ++.+.++||.| .++..||...+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33466788888774 57788887763322 22222 223334433 56788899988 35778887764
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCe-----EEEEeCCCCeEEEEeecCCCCCCCCCeeEEE-EccCCcE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT-----WCFYDLSSGICLTQVSDAGTDGRPEGYTSAA-FHPDGLI 371 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~ 371 (526)
.|..+..+...........+ +|...++||.||. +-.||..+.+....-.. ........ ..-+|.+
T Consensus 360 -~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m------~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 360 -QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM------LTRRSGHGVAVLGGKL 430 (571)
T ss_pred -ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCC------CcceeeeEEEEECCEE
Confidence 24444444322222222222 6888899998864 77788877655433211 11222222 2337888
Q ss_pred EEEEeCCC------cEEEEECCCCcee--eEecCCCCCeEEEEECCCCCEEEEEeCCc------EEEEEcCCCccceEEe
Q 009763 372 LGTGTSEA------LVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 372 l~~g~~dg------~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~d~------i~iwd~~~~~~~~~~~ 437 (526)
.++|+.++ .+..||..+++-. ..+...........+ ++.+.+.|+.++ |..||..+.+-...-.
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 88888654 5678888776432 222222222222233 677888887664 7778887755433311
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCC-------eEEEEEecccCcceeeee
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIKT 481 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~d-------i~v~~~~~~~~~~~~~~~ 481 (526)
.......+..+. -++...++|+.+ +..| +.....|.....
T Consensus 509 m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~ 555 (571)
T KOG4441|consen 509 MTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTE 555 (571)
T ss_pred CccccccccEEE--ECCEEEEEecccCccccceeEEc--CCCCCceeeCCC
Confidence 111111111122 246666677665 3344 333445555544
No 384
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.63 E-value=0.066 Score=53.73 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=87.0
Q ss_pred CeEEEEecCCCCEEEEEe--CCCcEEEEeCCCCcEEEEecccccceeEEEEecC----CCEEEEEeCCCcEEEEeCCCCC
Q 009763 225 GIVSLDIHYSKDVIATGG--VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~--~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
+|..++|.-....++|.- .+|.+++=| ...+..| ..|..+.|.|- ...|++......|.||-+....
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 677899984334444432 244444322 2333333 45899999984 2245555667899999875321
Q ss_pred ----ceeeeEecc---cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 299 ----NYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 299 ----~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
.+-+.++-. ...---..+.|||....|++-.....-.++++........... ...+.|.|.+|.+||+.
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi----~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI----KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec----cCCceEEEEEecCcCCE
Confidence 111111111 0111124678999998887776655555666654433333321 22357999999999987
Q ss_pred EEEEeCC-CcEEEEEC
Q 009763 372 LGTGTSE-ALVKIWDV 386 (526)
Q Consensus 372 l~~g~~d-g~i~iwd~ 386 (526)
|+++-.. =.-++||-
T Consensus 170 LVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEeCCeEEEEEecC
Confidence 7766433 34678874
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.63 E-value=0.05 Score=49.77 Aligned_cols=190 Identities=11% Similarity=0.060 Sum_probs=120.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCcEEEEeccccc-ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg--~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
..-...+.|..+|.++-+.|.-| .|+.+|+.+++......-... ---.++.. ++.+....-.++...+||..+-
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl-- 120 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL-- 120 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTT--
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccc--
Confidence 34556788877888888887766 689999999988765442211 11223333 3344445567899999999775
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
+.+.++. ..+.=+.++ .+++.|+.+.....+.++|..+.+....+........-..++-+.+. +|.+.|-.-...
T Consensus 121 -~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 121 -KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp -EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred -eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 5555554 334567777 36777888878889999999988777666532121222346667775 777777777788
Q ss_pred cEEEEECCCCceeeEecC---------------CCCCeEEEEECCCCCEEEEEeCC
Q 009763 380 LVKIWDVKSQANVAKFDG---------------HVGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~---------------~~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.|...|..+|+.+..+.. ...-.+.|++.|.+..|.+.+..
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 899999999988776521 12457899999877666665544
No 386
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.62 E-value=6.3e-05 Score=47.75 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.7
Q ss_pred ccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC
Q 009763 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG 36 (526)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (526)
|+|.-++.++||..+ +||+|.+.+|+++.++.+
T Consensus 1 CpiC~~~~~~Pv~l~-CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLP-CGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-S-SSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccC-CcCHHHHHHHHHHHHccC
Confidence 899999999999985 999999999999998763
No 387
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.54 E-value=0.00012 Score=47.35 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=31.5
Q ss_pred cccccCCCC---CCceEeCCCCeeeeHHHHHHHHHhcCCCCCC
Q 009763 2 NCSISGEVP---EEPVVSKNSGLLFEKRLIERHILDYGKCPVT 41 (526)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 41 (526)
.|+|+.+.. +.+++. .+||+|.+.+|.+|++.+++||++
T Consensus 2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRNNSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHSSB-TTT
T ss_pred CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhCCcCCcc
Confidence 488888875 345555 599999999999999999999986
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.53 E-value=0.0088 Score=58.10 Aligned_cols=203 Identities=11% Similarity=0.168 Sum_probs=103.2
Q ss_pred CCCEEEEEE-CCCeEEEEeCCC----CeEEEEeecCC--CCCCCCCeeEEEEccCCcEEEEEe------CCCcEEEEECC
Q 009763 321 TNKYFVTAS-LDNTWCFYDLSS----GICLTQVSDAG--TDGRPEGYTSAAFHPDGLILGTGT------SEALVKIWDVK 387 (526)
Q Consensus 321 ~~~~l~s~s-~dg~i~iwd~~~----~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~g~------~dg~i~iwd~~ 387 (526)
..++|+..+ ..+.|+|+|+.+ .+..+.+.... ....-.....+..-|+|.+++++- .-|-+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345677666 678899999873 34444443200 000012233455567888887752 23568888988
Q ss_pred CCceeeEecCCC---CCeEEEEECCCCCEEEEEe--------------------CCc-EEEEEcCCCccceEEecCCCCC
Q 009763 388 SQANVAKFDGHV---GAVTAISFSENGYYLATAA--------------------HDG-VKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 388 ~~~~~~~~~~~~---~~i~~l~~s~~~~~l~~~~--------------------~d~-i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
+.+.....+... ..-..+-|.|..+.++++. .+. +.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 877777765432 2345677788777777763 122 9999999999999998865334
Q ss_pred CeeEEEE--cCCCCEEEEEeCC-eEEEEEec-ccCcceeeeeecCCC---------C--------CcceEEEEEcCCCCE
Q 009763 444 PTNSVDF--DHSGSYLAVASAD-IRVYQVAS-VKADWNCIKTFPDLS---------G--------TGKATCVKFGPDAKY 502 (526)
Q Consensus 444 ~i~~i~~--s~~~~~l~~~~~d-i~v~~~~~-~~~~~~~~~~~~~~~---------~--------~~~v~~~~~s~~~~~ 502 (526)
.+..+.| +|+..+-++++.- -.||.+-. ....|...+...... . ..-|+.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 4556666 5566666665544 55555433 234454433322110 0 235799999999999
Q ss_pred EEEEe-CCCcEEEeeCCCCCCC
Q 009763 503 IAVGS-MDRNLRVFGLPGNDAP 523 (526)
Q Consensus 503 l~s~~-~dg~v~iw~l~~~~~~ 523 (526)
|+.++ .+|.|+.||+.....|
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 98776 5899999999887654
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00054 Score=68.26 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=78.0
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceE-EEEEecCCCEEEEEECCCeEEEEeCCCCeE
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ-AVTVHATNKYFVTASLDNTWCFYDLSSGIC 344 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~ 344 (526)
..|.-+.|+|.-+++|.+..+|.|.+..+.- +.+.++.-|...++ +++|.|||+.++.|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~----qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW----QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc----ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4577899999999999999999999998763 67777777777777 999999999999999999999999999988
Q ss_pred EEEeecCCCCCCCCCeeEEEEcc
Q 009763 345 LTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
+..... .....|.++.|.+
T Consensus 97 l~~~~~----s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLF----SVETDISKGIWDR 115 (665)
T ss_pred eecccc----ccccchheeeccc
Confidence 777421 2235677777763
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.50 E-value=0.00029 Score=43.18 Aligned_cols=39 Identities=38% Similarity=0.790 Sum_probs=34.2
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.48 E-value=0.011 Score=46.04 Aligned_cols=100 Identities=29% Similarity=0.358 Sum_probs=67.4
Q ss_pred eeEEEEec---CC-CEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 009763 268 VTSVKFVT---EG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 268 V~~l~~~~---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~ 343 (526)
|+++++.. +| +.|++|+.|..||+|+-. ..+..+. ..+.|+++.-... ..|+.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce-
Confidence 66777764 33 479999999999999754 3555554 3466888877654 67999999999999986332
Q ss_pred EEEEeecCCCCCCCCCeeEEEEcc---CC-cEEEEEeCCCcEE
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHP---DG-LILGTGTSEALVK 382 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~g~~dg~i~ 382 (526)
+..++. ...+.++.+.. || .-|++|-.+|.|-
T Consensus 74 -lWRiKS------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -LWRIKS------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeecc------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333321 12355655544 33 4688888888764
No 392
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.48 E-value=0.00015 Score=47.02 Aligned_cols=44 Identities=30% Similarity=0.555 Sum_probs=39.1
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPL 45 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~ 45 (526)
.|+|+.+.+.+|++.+.+||.|.+.++++|++. +.+||+++.++
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 389999999889888889999999999999998 67899988654
No 393
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.42 E-value=0.14 Score=49.67 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=112.7
Q ss_pred eCCCCcEEEEecccccce-----eEEEEecCCCEEEEEe-CCCc--EEEEeCCCCCceeeeEecccCc-cceEEEEEecC
Q 009763 251 DRPSGQIVTTLSGHSKKV-----TSVKFVTEGDLFLTGS-ADKT--VRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHAT 321 (526)
Q Consensus 251 d~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~ 321 (526)
|..+|..+..+..+...- +.=+|.++|+.|+.++ .||. +.+.|+.++ .+..+.... .......++|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecC
Confidence 667777777776443322 2335678887655544 4554 556677764 334444332 22335667788
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc--cCCcEEEEEe----------------------C
Q 009763 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH--PDGLILGTGT----------------------S 377 (526)
Q Consensus 322 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~g~----------------------~ 377 (526)
++.++.......+.-.|+++.+....+... ...+-...|. .|+..++-.- .
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-----~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVP-----DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE-------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECC-----cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 888877777779999999998765544421 1223234443 3555543321 1
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc---E--EEEEcCC-CccceEEecCCCCCCeeEEEE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG---V--KLWDLRK-LKNFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~---i--~iwd~~~-~~~~~~~~~~~~~~~i~~i~~ 450 (526)
.+.|...|+.+++....+. ....+..+.|+|.. .+|+-|..+. | +||=++. +...+.+..+.....+..=-|
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw 245 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW 245 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence 2345566777776655554 44567889999964 4455555442 3 7786653 333333333322445566678
Q ss_pred cCCCCEEEEEeC-----CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC
Q 009763 451 DHSGSYLAVASA-----DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 509 (526)
Q Consensus 451 s~~~~~l~~~~~-----di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 509 (526)
.|+|..|..-+. +-.|..++..+.....+... .....+-.++||++++-=+.|
T Consensus 246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------SEEEEEE-TTSSEEEEEE--
T ss_pred cCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC------CceeeeEEcCCCCEEEecCCC
Confidence 999987765332 23343433322222222221 123455667888877654443
No 394
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.39 E-value=0.00032 Score=44.51 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=33.1
Q ss_pred ccccCCCCCCceEeCCCCeeeeHHHHHHHHHh--cCCCCCC
Q 009763 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILD--YGKCPVT 41 (526)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~ 41 (526)
|+|..+.+.+|++...+||.|.+..|.+|++. .-+||.+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999999944569999999999999994 3468863
No 395
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.37 E-value=0.00018 Score=66.83 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=43.9
Q ss_pred CcccccCCCCCC--c--eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccccC
Q 009763 1 MNCSISGEVPEE--P--VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 1 ~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 55 (526)
++|+|||..+.. + ++- .|||||..++|++.= ....||+||++.+.+|+|+|..
T Consensus 114 ~~CPvt~~~~~~~~~fv~l~-~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 114 FICPVTGKEFNGKHKFVYLR-PCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred eECCCCCcccCCceeEEEEc-CCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 479999999743 2 444 499999999999983 4678999999999999999953
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.33 E-value=0.27 Score=52.37 Aligned_cols=278 Identities=12% Similarity=0.190 Sum_probs=156.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEE--ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~--~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
.|.-..|-.+..+|.++..||.+..|.+. +|..-.. ..-...++.--.|+..+..-+.+..|.-..+|..+..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--- 661 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK--- 661 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc---
Confidence 45666666678899999999998877554 3433211 1223455666667665554444455666667765442
Q ss_pred eeeEecccCccceEEEE-Eec--CCCEEEEEECCCeEEEEeCCCCeEE--EEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 301 DCKHTLKDHTAEVQAVT-VHA--TNKYFVTASLDNTWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~-~~p--~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
-+...+. -..+..++ |+. -...++++. .+.+.+.-++.-+.+ .++.. ......+++++...++++.
T Consensus 662 Lv~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl------~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 662 LVYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL------GESPRRICYQESSLTFGVL 732 (1096)
T ss_pred EEEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC------CCChhheEecccceEEEEE
Confidence 1222111 11122222 221 123455543 456666665543322 22221 1356667777755444443
Q ss_pred eCC--------------CcEEEEECCCCceeeEecCC----CCCeEEEEECCC-CCEEEEEeC----------Cc-EEEE
Q 009763 376 TSE--------------ALVKIWDVKSQANVAKFDGH----VGAVTAISFSEN-GYYLATAAH----------DG-VKLW 425 (526)
Q Consensus 376 ~~d--------------g~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~-~~~l~~~~~----------d~-i~iw 425 (526)
+.. ..++++|-++.+.+...+-. ...|.++.|..+ +.++++|.. .| |.+|
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 321 24667777766555443221 124566668777 777777752 24 8888
Q ss_pred EcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEE
Q 009763 426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV 505 (526)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 505 (526)
.+...+.+.......-.+.+.++.. -+|+++|.-+..+++|++.. .+.+..-.. +..++..+...-.|..+++
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t~----~~eLr~e~~--~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWTT----ERELRIECN--ISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEccc----cceehhhhc--ccCCeEEEEEEecCcEEEE
Confidence 8776444444433322445555442 36888888887899999833 222332222 2557788888888999999
Q ss_pred EeCCCcEEEeeCCCCC
Q 009763 506 GSMDRNLRVFGLPGND 521 (526)
Q Consensus 506 ~~~dg~v~iw~l~~~~ 521 (526)
|..=+.+.+......+
T Consensus 886 gDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDE 901 (1096)
T ss_pred eeccceEEEEEEeccC
Confidence 9888888776665544
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.33 E-value=0.026 Score=44.01 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=67.3
Q ss_pred eEEEEecC---CC-CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 226 IVSLDIHY---SK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 226 I~~~~~s~---~~-~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
|+++++.. +| +-|++|+.|..|++|+-. +.+..+.. ...|++++-... ..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----
Confidence 55666544 33 589999999999999864 56666653 456888877655 5689999999999997533
Q ss_pred eeEecccCccceEEEEEec-C--C-CEEEEEECCCeEE
Q 009763 302 CKHTLKDHTAEVQAVTVHA-T--N-KYFVTASLDNTWC 335 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p-~--~-~~l~s~s~dg~i~ 335 (526)
.+...+. ...++++.+.. + | .-|++|-.+|.|-
T Consensus 73 RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222232 23366666543 2 2 3688888888764
No 398
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.31 E-value=0.34 Score=51.72 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=151.0
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cccccceeEEEEecCC------CEEEEEeCCCcEEEEeCCC
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTEG------DLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~~------~~l~s~s~dg~i~iwd~~~ 296 (526)
..++....+.+...++.++.++.+...+...+...... ......|.|+.++|-| ++++.|.++..+.+.-...
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 34555555555666777776777776676655422211 1235679999999742 2688888887776654433
Q ss_pred CCceeeeEecc--cCccceEEEEEecCCCEEEEEECCCeEEEEeCC--CCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 297 DGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 297 ~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
+....+...+. .-...|.-..+-.+..+|+++..||.+..|-+. ++.....-+. . -...++.--.|+..+..-
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~--~-lGt~P~~Lr~f~sk~~t~ 644 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV--T-LGTQPISLRTFSSKSRTA 644 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc--c-cCCCCcEEEEEeeCCceE
Confidence 32212222122 122345555565568899999999998776554 4433221110 0 112355555666655444
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCC--CCEEEEEeCCcEEEEEcCCCccc--eEEecCCCCCCeeEE
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNF--RSFESSDSETPTNSV 448 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~i~iwd~~~~~~~--~~~~~~~~~~~i~~i 448 (526)
+.+..|.-..+|..+ ++.+.+--.-..--+.+.|+.+ ...|+.+..+.+++.-+..-+.+ +++.. ......+
T Consensus 645 vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl---~~~prrI 720 (1096)
T KOG1897|consen 645 VFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL---GESPRRI 720 (1096)
T ss_pred EEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC---CCChhhe
Confidence 444456666666543 3332221101101112233333 34677777777777765543332 33333 4567778
Q ss_pred EEcCCCCEEEEEeCC----------------eEEEEEecccCcceeeee--ecCCCCCcceEEEEEcCC-CCEEEEEeC-
Q 009763 449 DFDHSGSYLAVASAD----------------IRVYQVASVKADWNCIKT--FPDLSGTGKATCVKFGPD-AKYIAVGSM- 508 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d----------------i~v~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~-~~~l~s~~~- 508 (526)
++.+....+++.+.. ++++|- ++.+.+.. +........+.++.|..| +.++++|..
T Consensus 721 ~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~----nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~ 796 (1096)
T KOG1897|consen 721 CYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ----NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL 796 (1096)
T ss_pred EecccceEEEEEecccccchhhcCCcceEEEEEEecC----CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe
Confidence 888755555554432 344442 23333322 221111234555568877 677777753
Q ss_pred ---------CCcEEEeeCCC
Q 009763 509 ---------DRNLRVFGLPG 519 (526)
Q Consensus 509 ---------dg~v~iw~l~~ 519 (526)
.|.|.+|.+..
T Consensus 797 v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 797 VYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eccCCCCcccceEEEEEEec
Confidence 47788887766
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.075 Score=48.41 Aligned_cols=201 Identities=11% Similarity=0.120 Sum_probs=120.1
Q ss_pred eEEEEEecCCC-EEEEEECCCe-EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC-----CcEEEEE
Q 009763 313 VQAVTVHATNK-YFVTASLDNT-WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWD 385 (526)
Q Consensus 313 v~~l~~~p~~~-~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd 385 (526)
...|+++|... -++.+-.-|+ ..++|....+....+... ......-.-.|||||.+|+..-.| |.|-|||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~---~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ---EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc---cCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 34677887544 4555555555 567899888777666532 111233456799999999886443 7899999
Q ss_pred CCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCC-------------------cEEEEEcCCCccceEEecC--CCCC
Q 009763 386 VKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHD-------------------GVKLWDLRKLKNFRSFESS--DSET 443 (526)
Q Consensus 386 ~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-------------------~i~iwd~~~~~~~~~~~~~--~~~~ 443 (526)
.+.+ ..+..+..|.-....+.+.+||+.|+.+..+ .+.+.|..++..+.+.... .+..
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 9854 4566777777778899999999999887531 0233344445444433332 2345
Q ss_pred CeeEEEEcCCCCEEEEEeCC---------eEEEEEecccCcceeeeeecCCC-----CCcceEEEEEcCCCCEEEEEeC-
Q 009763 444 PTNSVDFDHSGSYLAVASAD---------IRVYQVASVKADWNCIKTFPDLS-----GTGKATCVKFGPDAKYIAVGSM- 508 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d---------i~v~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~- 508 (526)
.+..++..++|..++.+-.. +-.+ .....+..+.... -...|-+++.+.+..+++..+-
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~------~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~ 300 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF------RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR 300 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeec------cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC
Confidence 78888888888877755322 1111 1111111111100 0234667777765555555444
Q ss_pred CCcEEEeeCCCCCC
Q 009763 509 DRNLRVFGLPGNDA 522 (526)
Q Consensus 509 dg~v~iw~l~~~~~ 522 (526)
.+...+||..++..
T Consensus 301 GN~~vi~da~tG~v 314 (366)
T COG3490 301 GNRAVIWDAATGAV 314 (366)
T ss_pred CCeEEEEEcCCCcE
Confidence 44567788877653
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.29 E-value=0.037 Score=57.82 Aligned_cols=228 Identities=16% Similarity=0.184 Sum_probs=120.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCe
Q 009763 276 EGDLFLTGSAD------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGI 343 (526)
Q Consensus 276 ~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~ 343 (526)
.+.+++.||.+ ..+..||..++ .+.....+. +...-.++++. ++...++||.| .++..||...++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 34456666665 35778887764 333444333 22333444444 56788888888 357889988887
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC-----cEEEEECCCCce--eeEecCCCCCeEEEEECCCCCEEEE
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLAT 416 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~ 416 (526)
....-... . .....-...-+|.+.++|+.|| .|..||..+.+- +..+.........+.+ +|.+.++
T Consensus 361 W~~~a~M~-~----~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~ 433 (571)
T KOG4441|consen 361 WTPVAPMN-T----KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYII 433 (571)
T ss_pred eeccCCcc-C----ccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEE
Confidence 54422111 1 1111111222788999999987 477888876542 2222212222233333 6777777
Q ss_pred EeCCc-------EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecC
Q 009763 417 AAHDG-------VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 417 ~~~d~-------i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~ 484 (526)
|+.++ +..||..+..-...-......... .++ .-++.+.++||.+ -.|-.++.....|..+.....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 77442 678887765432221111101111 122 2356777777755 123334444567777754443
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCC-----cEEEeeCCC
Q 009763 485 LSGTGKATCVKFGPDAKYIAVGSMDR-----NLRVFGLPG 519 (526)
Q Consensus 485 ~~~~~~v~~~~~s~~~~~l~s~~~dg-----~v~iw~l~~ 519 (526)
. ...+-.+.+ +++..++|+.|| +|-.||...
T Consensus 512 ~--rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 512 P--RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred c--cccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 2 222222232 667778888887 455565543
No 401
>PHA02713 hypothetical protein; Provisional
Probab=97.29 E-value=0.043 Score=57.44 Aligned_cols=217 Identities=10% Similarity=0.087 Sum_probs=108.8
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCeEEEEeecCCCCCCCCCee
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 361 (526)
.+..||..++ .+..+..+...... .+++. -++..++.||.+ ..+..||..++.....-. ... ....
T Consensus 273 ~v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~---m~~--~R~~ 344 (557)
T PHA02713 273 CILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP---MIK--NRCR 344 (557)
T ss_pred CEEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC---Ccc--hhhc
Confidence 4667777663 23333322211111 12222 256677777753 347788988876532211 101 1111
Q ss_pred EEEEccCCcEEEEEeCCC-----cEEEEECCCCcee--eEecCCCCCeEEEEECCCCCEEEEEeCC--------------
Q 009763 362 SAAFHPDGLILGTGTSEA-----LVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHD-------------- 420 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~d-------------- 420 (526)
.....-+|.+.+.|+.++ .+..||..+.+-. ..+.........+.+ +|.+.+.|+.+
T Consensus 345 ~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccc
Confidence 122233688888888764 4788998765422 122211112222333 67777776643
Q ss_pred ----------cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEEeccc-Ccceeeeeec
Q 009763 421 ----------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQVASVK-ADWNCIKTFP 483 (526)
Q Consensus 421 ----------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~~~-~~~~~~~~~~ 483 (526)
.+..||..+.+-...-... ..........-+|++.++|+.+ -.+..++... ..|..+..+.
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 1667777654322111110 0111111122346666666642 1244444444 4688777665
Q ss_pred CCCCCcceEEEEEcCCCCEEEEEeCCC--cEEEeeCCCC
Q 009763 484 DLSGTGKATCVKFGPDAKYIAVGSMDR--NLRVFGLPGN 520 (526)
Q Consensus 484 ~~~~~~~v~~~~~s~~~~~l~s~~~dg--~v~iw~l~~~ 520 (526)
.. ......+.+ +|++.++||.|| .+-.||...+
T Consensus 501 ~~--r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 501 SR--LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cc--cccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 43 222222333 788889999888 6777777654
No 402
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.26 E-value=0.00012 Score=65.32 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=40.8
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|-||-+-...|++|+ |||+|+--||..||.+++.||+|.++--
T Consensus 27 rC~IC~~~i~ip~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 27 RCRICDCRISIPCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred Hhhhhhheeecceecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 5999999999999997 9999999999999999999999987543
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.11 Score=47.28 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=126.5
Q ss_pred EEEecCCC-CEEEEEeCCCc-EEEEeCCCCcEEEEecccccc--eeEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 009763 228 SLDIHYSK-DVIATGGVDTN-AVLFDRPSGQIVTTLSGHSKK--VTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG 298 (526)
Q Consensus 228 ~~~~s~~~-~~l~t~~~dg~-v~vwd~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 298 (526)
.|.|+|.. .-++.+-.-|+ ..+||....+...++...++. --.=.|+|||.+|+..-.| |.|-|||....
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~- 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG- 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-
Confidence 56677753 35555555554 467888776655444322111 1123689999998876443 78999998743
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEEC------------------CCeEEEEeCCCCeEEEEeecCCCCCCCCCe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASL------------------DNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 360 (526)
+..+..+..|.-....+.|.+||+.++.+.. .-++.+.|..+|..+.+.... ...+...+
T Consensus 151 -fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~lSi 228 (366)
T COG3490 151 -FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQLSI 228 (366)
T ss_pred -cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhhcce
Confidence 4677778888888889999999999887643 112444454455544443321 11334567
Q ss_pred eEEEEccCCcEEEEEeCCCc-----EEEEECCCCceeeEecC-------CCCCeEEEEECCCCCEEEEEeCCc--EEEEE
Q 009763 361 TSAAFHPDGLILGTGTSEAL-----VKIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG--VKLWD 426 (526)
Q Consensus 361 ~~~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd 426 (526)
..++..+||...+.+-..|. -.+=-.+.++++.-+.. ....|-+++.+.+..+++..+-.| ..+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 88888888877666544331 11111123333333321 124577788877666777666655 88999
Q ss_pred cCCCccceEEec
Q 009763 427 LRKLKNFRSFES 438 (526)
Q Consensus 427 ~~~~~~~~~~~~ 438 (526)
..++..+..-..
T Consensus 309 a~tG~vv~~a~l 320 (366)
T COG3490 309 AATGAVVSEAAL 320 (366)
T ss_pred cCCCcEEecccc
Confidence 999887655433
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.24 E-value=0.16 Score=49.66 Aligned_cols=222 Identities=12% Similarity=0.128 Sum_probs=102.2
Q ss_pred CCEEEEEe-CCCcEEEEeCCC----CcEEEEecc---cc----cceeEEEEecCCCEEEEEeC--C----CcEEEEeCCC
Q 009763 235 KDVIATGG-VDTNAVLFDRPS----GQIVTTLSG---HS----KKVTSVKFVTEGDLFLTGSA--D----KTVRVWQGSE 296 (526)
Q Consensus 235 ~~~l~t~~-~dg~v~vwd~~~----~~~~~~~~~---h~----~~V~~l~~~~~~~~l~s~s~--d----g~i~iwd~~~ 296 (526)
.++|+..+ ..+.|+|+|+.+ .++.+.+.. +. ..-..+.--|+|++++++-. + |-+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666655 788999999874 344555542 11 11223333578888887532 2 4567777654
Q ss_pred CCceeeeEeccc---CccceEEEEEecCCCEEEEEEC--------------------CCeEEEEeCCCCeEEEEeecCCC
Q 009763 297 DGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASL--------------------DNTWCFYDLSSGICLTQVSDAGT 353 (526)
Q Consensus 297 ~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~~~~~~~ 353 (526)
- +....... ....-..+-|+|..+.++|+.. ..++.+||+.+.+.++++.....
T Consensus 167 f---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 167 F---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp -----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 3 33333332 1234567778998899888753 35799999999999999874311
Q ss_pred CCCCCCeeEEEEcc--CCcEEEEE-eCCCcEEEEEC-CCCc----eeeEecCC-----------------CCCeEEEEEC
Q 009763 354 DGRPEGYTSAAFHP--DGLILGTG-TSEALVKIWDV-KSQA----NVAKFDGH-----------------VGAVTAISFS 408 (526)
Q Consensus 354 ~~~~~~v~~~~~~~--~~~~l~~g-~~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~i~~l~~s 408 (526)
......+.|.. +..+=++| .-.+.|..|-- ..++ .+..+... ..-|+.|..|
T Consensus 244 ---g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 244 ---GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp ---EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred ---CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 12344566644 33333332 23344444432 3332 22222110 2457899999
Q ss_pred CCCCEEEEEeCC-c-EEEEEcCCCccce---EEecCC--------------CCCCeeEEEEcCCCCEEEEEeC
Q 009763 409 ENGYYLATAAHD-G-VKLWDLRKLKNFR---SFESSD--------------SETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 409 ~~~~~l~~~~~d-~-i~iwd~~~~~~~~---~~~~~~--------------~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
.|.++|..++-. | |+.||+......+ .+.... -.+...-+..|-||+.|++.++
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999999887765 5 9999998754322 222111 0123467888889998887764
No 405
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.24 E-value=0.069 Score=55.88 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=104.2
Q ss_pred CccceEEEEEecCCCEEEEEE------CCC--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC--
Q 009763 309 HTAEVQAVTVHATNKYFVTAS------LDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-- 378 (526)
Q Consensus 309 h~~~v~~l~~~p~~~~l~s~s------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-- 378 (526)
....+...+++|+|+.++... .|. .|.+++.... . ..+.. + .....-.|+|||..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~----g--~~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLE----G--HSLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeec----C--CCCCCceECCCCCceEEEecCcc
Confidence 334678899999999877665 243 4555564322 2 33321 1 136778899998777666432
Q ss_pred ----------CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEE---EEcCCCcc-c---eEEecCCC
Q 009763 379 ----------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKL---WDLRKLKN-F---RSFESSDS 441 (526)
Q Consensus 379 ----------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~i---wd~~~~~~-~---~~~~~~~~ 441 (526)
+.+.+.++..+.... ...+.|..+.|||||..++......|.+ -....+.. + ..+.. ..
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l 495 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP-GL 495 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-cc
Confidence 233333444333222 2345799999999999988877544655 44333431 1 11111 11
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 442 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 442 ~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
...+.++.|..++.++ ++..+ -.+|.+........ .+........+.+++=+++ .|+....+|.+
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~---~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD---ALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEEecCCcccc---ccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 2346889999999866 44443 55676644322211 1122112456777777653 46666667743
No 406
>PHA02713 hypothetical protein; Provisional
Probab=97.24 E-value=0.014 Score=60.92 Aligned_cols=187 Identities=9% Similarity=0.140 Sum_probs=100.3
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCcEEE--EecccccceeEEEEecCCCEEEEEeCCC-----cEEEEeCCCCCce
Q 009763 234 SKDVIATGGVD------TNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVTEGDLFLTGSADK-----TVRVWQGSEDGNY 300 (526)
Q Consensus 234 ~~~~l~t~~~d------g~v~vwd~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~ 300 (526)
++.++++||.+ ..+..||..++.-.. .+.........+ .-+|.+.+.||.++ ++..||..++ .|
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~-~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDD-KW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCC-eE
Confidence 56777888754 346778876653211 111111111222 22677888888764 4788998763 34
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCC-----------------------eEEEEeCCCCeEEEEeecCCCCCCC
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----------------------TWCFYDLSSGICLTQVSDAGTDGRP 357 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 357 (526)
..+..+.........+.+ +|...+.||.++ .+..||..+.+....-... . .
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~-~-- 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-T-G-- 453 (557)
T ss_pred EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-c-c--
Confidence 433333221111222222 577777777653 4778888887654322211 0 1
Q ss_pred CCeeEEEEccCCcEEEEEeCCC------cEEEEECCC-Cc--eeeEecCCCCCeEEEEECCCCCEEEEEeCCc---EEEE
Q 009763 358 EGYTSAAFHPDGLILGTGTSEA------LVKIWDVKS-QA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLW 425 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~~dg------~i~iwd~~~-~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iw 425 (526)
........-++.+.+.|+.++ .+..||..+ .+ .+..+.........+.+ +|++.++|+.++ +-.|
T Consensus 454 -r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 454 -TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred -cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 111112233577778887542 467899886 33 33333333333334444 778888888776 6777
Q ss_pred EcCCCcc
Q 009763 426 DLRKLKN 432 (526)
Q Consensus 426 d~~~~~~ 432 (526)
|..+.+-
T Consensus 531 d~~~~~W 537 (557)
T PHA02713 531 NVYTYEW 537 (557)
T ss_pred Ccccccc
Confidence 7766543
No 407
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00024 Score=61.90 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=29.7
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHh
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD 34 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (526)
+|+++-.+..+|||+| .||+|||.+|.+||-.
T Consensus 45 cCsLtLqPc~dPvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 45 CCSLTLQPCRDPVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred eeeeecccccCCccCC-CCeeeeHHHHHHHHHH
Confidence 5999999999999997 7999999999999963
No 408
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.18 E-value=0.001 Score=40.56 Aligned_cols=38 Identities=37% Similarity=0.493 Sum_probs=33.4
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEe
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd 338 (526)
.+...+..|...|.++.|++.+.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566677889999999999999999999999999996
No 409
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.19 Score=46.08 Aligned_cols=273 Identities=13% Similarity=0.122 Sum_probs=151.7
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE---EEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
+-+..+.++ ++++..+..+.-++++|+.+... +..+.. .+- .-.|.-.|++..++..|.-+-+.|+.+....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gy--aygv~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGY--AYGVYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-Cce--EEEEEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 345566666 56777777778899999876433 222221 122 2234447899888886777888999886655
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
.....+......-..++.+ |++-..+..|+-+.+.|+........+..... ...+.++..+++.-+++.. +--
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~---g~g~~sv~vsdnr~y~vvy--~eg 234 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT---GPGTYSVSVSDNRAYLVVY--DEG 234 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec---CCceEEEEecCCeeEEEEc--ccc
Confidence 5555554444445666665 88888888999999999987654333321111 1267778888776666654 344
Q ss_pred EEEEECCCCceeeEecC--CCC--CeEEEEECCCCCEEEEEeCC-cEEEEEcCCCccceEEecCCC-CCCeeEEEEcCCC
Q 009763 381 VKIWDVKSQANVAKFDG--HVG--AVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDS-ETPTNSVDFDHSG 454 (526)
Q Consensus 381 i~iwd~~~~~~~~~~~~--~~~--~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~~~~~~~~~~~-~~~i~~i~~s~~~ 454 (526)
+.+-|....+....+.. ... .++.+.. .+++......+ ++.+-|..+............ ......+.. .+
T Consensus 235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~ 310 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YG 310 (370)
T ss_pred eEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ec
Confidence 77778776654444321 122 2333344 34555555444 366777665332111111100 112222322 34
Q ss_pred CEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 455 SYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 455 ~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.++..+..+ +.+.+.... .......+. ...+.+.+.+-+.+++.+...+|.+.+|+..
T Consensus 311 ~y~yiadkn~g~vV~~s~~----s~m~~~~g~--~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 311 NYNYIADKNTGAVVDASPP----SMMDKRPGR--PTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CeeEeccCCceEEEeCCCh----hhcccccCc--ceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 555555554 555444211 111111111 1223333444456688999999999999864
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.17 Score=46.53 Aligned_cols=196 Identities=9% Similarity=0.120 Sum_probs=126.0
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
..|.++.|+|+.+.|++......-.|+=..+|+.+.++.-. -...-.+.|..+|.+.++--.++.+.++.+..+.....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 44999999999998888887778778877779998876521 22345678888888877777888888887766532111
Q ss_pred e----Eecc--cC-ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC-----CCCCCCeeEEEEcc-CC
Q 009763 303 K----HTLK--DH-TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-----DGRPEGYTSAAFHP-DG 369 (526)
Q Consensus 303 ~----~~~~--~h-~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~ 369 (526)
. ..+. .+ ....-.++|.|....|+.+-...-+.||.+.............. .-.-..+.++.|++ .+
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~ 245 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITN 245 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCC
Confidence 1 1111 12 45678999999999888888888888877664331111110000 01123577888887 67
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEecCC---------CCCeEEEEECCCCCEEEEEeCC
Q 009763 370 LILGTGTSEALVKIWDVKSQANVAKFDGH---------VGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.+++.+.+++.+.-.|.. |..+..+.-+ ....-.++..++|.+.+++--+
T Consensus 246 ~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 246 SLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred cEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 888888888888888875 3333333211 1133456777666655554333
No 411
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.21 Score=45.84 Aligned_cols=201 Identities=17% Similarity=0.178 Sum_probs=120.9
Q ss_pred ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC
Q 009763 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 389 (526)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 389 (526)
.+-+..+.++ +++...+..+.-++++|+.+.........-... -..-.|.-.|++..++..|.-+.++|+.+.
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-----gyaygv~vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-----GYAYGVYVSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC-----ceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence 3456666675 778888888889999999887665554322111 223344556888888886777888898765
Q ss_pred c---eeeEecCCCCCeEEEEECCCCCEEEEEeCC-cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeE
Q 009763 390 A---NVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIR 465 (526)
Q Consensus 390 ~---~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~ 465 (526)
. ....+....+.-..++.| |++-..+..+ |+.+-|+.......-+........+.++..+++.-|++..+..+.
T Consensus 159 ssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvl 236 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVL 236 (370)
T ss_pred CCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceE
Confidence 3 333444444445667775 5566666555 499999987665444433333447888999988888888888777
Q ss_pred EEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCC
Q 009763 466 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 523 (526)
Q Consensus 466 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~ 523 (526)
+-+.+..+..+ ........ ....++.+.. .+++......+.-+-+-|+.....|
T Consensus 237 ivd~s~~ssp~-~~gsyet~-~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp 290 (370)
T COG5276 237 IVDVSGPSSPT-VFGSYETS-NPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP 290 (370)
T ss_pred EEecCCCCCce-EeeccccC-Ccccccceec--ccceeeeeccccCceeEeccCCCCC
Confidence 77764322211 11222110 1112222233 4455555655666666666554443
No 412
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=97.11 E-value=0.00016 Score=63.92 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=39.1
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhc--CCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY--GKCPVTGEP 44 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~ 44 (526)
.|+||-.+...||||.||||+|+|.-|+.|+.-. =+||+-|-+
T Consensus 178 rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 178 RDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 6999999999999999999999999999999874 379998865
No 413
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.10 E-value=0.11 Score=54.46 Aligned_cols=230 Identities=13% Similarity=0.100 Sum_probs=115.4
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe------CCCcEEEEeCCCCCceeeeEecccCccceEEEE
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 317 (526)
+|.+.-.+-..-..+.-..+....+.+.+++|+|+.++... .|+.-.||-...++....+ ..+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCC--CCCCce
Confidence 66665554322222222223334678899999999876654 2443344433222221222 2222 377889
Q ss_pred EecCCCEEEEEECC-CeEEEEeCCCCeEEEEeecCC--CC-CCCCCeeEEEEccCCcEEEEEeCCCcEEE---EECCCCc
Q 009763 318 VHATNKYFVTASLD-NTWCFYDLSSGICLTQVSDAG--TD-GRPEGYTSAAFHPDGLILGTGTSEALVKI---WDVKSQA 390 (526)
Q Consensus 318 ~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~i---wd~~~~~ 390 (526)
|+|+|..+.+.... ..+++.+-.....+..+.... .. .....|..+.|+|||..++... +|.|++ -....+.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 99998877776543 222333222211222111100 00 1134699999999999888765 477776 3433443
Q ss_pred e-e---eEecC-CCCCeEEEEECCCCCEEEEEeCCc---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeC
Q 009763 391 N-V---AKFDG-HVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 391 ~-~---~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
. + ..+.. -...+..+.|..++.++ ++..++ +...++..... ..+.......++..++-+++ -+++...
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcC
Confidence 1 1 11222 22346889999998865 444443 54444443221 11122222456667776653 3444444
Q ss_pred CeEEEEEec---ccCcceeeeeec
Q 009763 463 DIRVYQVAS---VKADWNCIKTFP 483 (526)
Q Consensus 463 di~v~~~~~---~~~~~~~~~~~~ 483 (526)
+. +|.+.. ....|..+..+.
T Consensus 559 ~g-~~~l~~~~~~~~~W~ev~~l~ 581 (591)
T PRK13616 559 RA-VLQLPNSDSGDQYWREVPGLM 581 (591)
T ss_pred Cc-eEEecCCCCCCCCceECcccc
Confidence 43 233321 223565555443
No 414
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.012 Score=62.75 Aligned_cols=107 Identities=23% Similarity=0.320 Sum_probs=75.1
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCC-cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec
Q 009763 228 SLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (526)
.++....+..++.|++.|.+...|+... .....=..-.++|++++|+.+|..++.|-.+|.|.+||...+ ...+.+
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i 168 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVI 168 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeee
Confidence 3333344678999999999999987643 111222234678999999999999999999999999999887 455555
Q ss_pred ccCccceEEEE---EecCCCEEEEEECCCeEEEEeC
Q 009763 307 KDHTAEVQAVT---VHATNKYFVTASLDNTWCFYDL 339 (526)
Q Consensus 307 ~~h~~~v~~l~---~~p~~~~l~s~s~dg~i~iwd~ 339 (526)
..|..+.+++- +..++..++++...|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55555555444 4445667888877776 4543
No 415
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.04 E-value=0.00014 Score=49.42 Aligned_cols=50 Identities=30% Similarity=0.470 Sum_probs=27.2
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCcccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVP 52 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 52 (526)
|-|++++.+.++||..-.+.|+|+..+|.+.+.. .||++..|-.+.|+.-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~ 57 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQI 57 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS---
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHh
Confidence 5799999999999976689999999999887763 4999999999888754
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.27 Score=45.32 Aligned_cols=198 Identities=13% Similarity=0.213 Sum_probs=120.3
Q ss_pred ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc--cCccceEEEEEecCCCEEEEEECCCeEEEEe
Q 009763 261 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338 (526)
Q Consensus 261 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd 338 (526)
+.+-...|.++.|+|+.+.|++......-.||=...+ +.++++. + -...-.|.+..+|++.++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G---dlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG---DLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCC---ceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 3455566999999999998888777666666643333 4444432 3 23345677877888888888899999988
Q ss_pred CCCCeEEEE-----eecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeE---ecC-------CCCCeE
Q 009763 339 LSSGICLTQ-----VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK---FDG-------HVGAVT 403 (526)
Q Consensus 339 ~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~-------~~~~i~ 403 (526)
+.....+.. +........+.....++|.|....|+.+-+-.-+.||.+........ ... .-..|.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 776533322 22222222367788999999888888887877788877653321111 111 123577
Q ss_pred EEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEEecCCC-------CCCeeEEEEcCCCCEEEEEeCC
Q 009763 404 AISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 404 ~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~d 463 (526)
++.|++. +.+|+.+..++ +.-.|+.. ..+..+..... ....-.++.+++|.+.+++-.+
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 8889875 45555555555 66666543 32333322211 1234567777777766655444
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=96.95 E-value=0.43 Score=46.46 Aligned_cols=277 Identities=9% Similarity=0.060 Sum_probs=137.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec----ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
...+++|.|....+-+++|. +|.|.. ..+.|+.-.... .....+.++.|.++ ..+++ +..|.|..- -+.+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCCC
Confidence 45789999986666666664 454432 222233322211 12234677877643 33444 444543322 22233
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.++.+..-.........+.....+..+ .++..|.|..-+ +.|+.-..+.. .....+..+.+.+++.+++++. .
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~-DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~ 192 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTT-DGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-R 192 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEEC-CCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-C
Confidence 343332110111112222222222233 334444443222 22332222221 2234688899999987776664 4
Q ss_pred CcEEE-EECCCCceeeEe-cCCCCCeEEEEECCCCCEEEEEeCCcEEEE-EcCCCccceEEecC--CCCCCeeEEEEcCC
Q 009763 379 ALVKI-WDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLW-DLRKLKNFRSFESS--DSETPTNSVDFDHS 453 (526)
Q Consensus 379 g~i~i-wd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~i~iw-d~~~~~~~~~~~~~--~~~~~i~~i~~s~~ 453 (526)
|.+.. +|- .++.-... ......++++.+.+++..++++. .+..++ ....+......... .....+..+.+.++
T Consensus 193 G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 193 GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 54433 221 12212122 23446789999999998877764 454344 23333332222211 01245788899998
Q ss_pred CCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 454 ~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
+..++++.....+... .....|......... ......+.|..+++.++ .+..|.|..|+=
T Consensus 271 ~~~~~~G~~G~v~~S~-d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 271 GEIWAGGGNGTLLVSK-DGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCEEEEcCCCeEEEeC-CCCCCCeECCcCCCC--CcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 8877766544344333 334566654322221 23577788876766655 456888877763
No 418
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.95 E-value=0.00092 Score=41.59 Aligned_cols=38 Identities=29% Similarity=0.553 Sum_probs=33.3
Q ss_pred ccccCCCCCCceEeCCCCeeeeHHHHHHHHH-hcCCCCCC
Q 009763 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHIL-DYGKCPVT 41 (526)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~ 41 (526)
|+|+.+....+++.+ +||.|....|++|++ ..++||++
T Consensus 1 C~iC~~~~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999989999996 999999999999998 45678864
No 419
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0043 Score=65.82 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=77.6
Q ss_pred CCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC-CCC
Q 009763 368 DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-ETP 444 (526)
Q Consensus 368 ~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~ 444 (526)
.+..++.|+..|.+...|++.. .+...=....++|++++|+.+|..++.|-.+| |.+||...++..+.+..+.+ ...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557889999999999998653 21122233467999999999999999999999 99999999999888877643 233
Q ss_pred eeEEEEcCCCCEEEEEeCCeEEEEEe
Q 009763 445 TNSVDFDHSGSYLAVASADIRVYQVA 470 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~di~v~~~~ 470 (526)
+..+.+..++..++++...+.+|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gsf~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGSFWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCceEEEE
Confidence 44555566667777777778888764
No 420
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.92 E-value=0.0012 Score=61.42 Aligned_cols=55 Identities=33% Similarity=0.532 Sum_probs=46.7
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCC---CCCCCCC-CcCccccccCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKC---PVTGEPL-TMDDIVPIKTG 56 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~-~~~~~~~~~~~ 56 (526)
+|+||+++.+.|||+-.-|++|.|..|.+||-..+.. |.+...+ ++.||++|+-.
T Consensus 36 ~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~ 94 (260)
T PF04641_consen 36 HCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFT 94 (260)
T ss_pred cccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeE
Confidence 6999999999999988889999999999999999764 4444443 69999999863
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.0019 Score=56.55 Aligned_cols=105 Identities=13% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCee-EEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC
Q 009763 321 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT-SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399 (526)
Q Consensus 321 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 399 (526)
-+..+++|+.+|.|.+|............. .+ ...+. .+....++.+..++..+|.|+.|++.-.+.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~---s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVC---SG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhh---cc-cccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 356789999999999998873221111110 01 12222 23333366789999999999999998887776666565
Q ss_pred -CCeEEEEECCCCCEEEEE--eCCc-EEEEEcCC
Q 009763 400 -GAVTAISFSENGYYLATA--AHDG-VKLWDLRK 429 (526)
Q Consensus 400 -~~i~~l~~s~~~~~l~~~--~~d~-i~iwd~~~ 429 (526)
.++..+..+..+.++..+ +.+. ++.|++..
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 344444444445555554 4444 56666543
No 422
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.86 E-value=0.74 Score=47.82 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=92.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccc--cc--ceeEEEEecCCCEEEEEe------CCCcEEEEeCCCCCceeeeE
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH--SK--KVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h--~~--~V~~l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~ 304 (526)
+..++.++.|+.+.-+|..+|+.+...... .. .+++--..-++ .++++. .+|.|.-+|..++...-...
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 356777888999999999999998765421 11 11111111134 455543 26889999988864321111
Q ss_pred ecccC----------------------------ccceE-EEEEecCCCEEEEEECC-----C-----------eEEEEeC
Q 009763 305 TLKDH----------------------------TAEVQ-AVTVHATNKYFVTASLD-----N-----------TWCFYDL 339 (526)
Q Consensus 305 ~~~~h----------------------------~~~v~-~l~~~p~~~~l~s~s~d-----g-----------~i~iwd~ 339 (526)
..... ...++ .+++.|...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 11111 11122 33566656665555421 2 6778899
Q ss_pred CCCeEEEEeecCCCCCCC----CCeeEEEEccCCc---EEEEEeCCCcEEEEECCCCcee
Q 009763 340 SSGICLTQVSDAGTDGRP----EGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANV 392 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~ 392 (526)
++|+..-.+.....+... ....-+.+..+|. .++.+..+|.++++|.++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988777643222111 1222333334665 8889999999999999999875
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.82 E-value=0.12 Score=52.08 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=95.0
Q ss_pred cceeEEEEecCCCE-EEEEe--CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC----CCEEEEEECCCeEEEEe
Q 009763 266 KKVTSVKFVTEGDL-FLTGS--ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT----NKYFVTASLDNTWCFYD 338 (526)
Q Consensus 266 ~~V~~l~~~~~~~~-l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~l~s~s~dg~i~iwd 338 (526)
.+|..++|. ||+. +++.- .+|.+++=|- ..+..| ..|..+.|.|- ...+++......|.+|-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 468899997 5554 44432 2444443221 333333 45899999984 33677777889999998
Q ss_pred CC-----CCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECCCC
Q 009763 339 LS-----SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENG 411 (526)
Q Consensus 339 ~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~ 411 (526)
+. +++.+......-....+---..+.|||...+|++-+....-.+++++... ....++ ..+-|.|.+|.+||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcC
Confidence 75 23332222111011111223567899988888887666555566665443 233343 56789999999999
Q ss_pred CEEEEEeCCc--EEEEEcCC
Q 009763 412 YYLATAAHDG--VKLWDLRK 429 (526)
Q Consensus 412 ~~l~~~~~d~--i~iwd~~~ 429 (526)
..|+++-... -++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 9999887776 78998643
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.44 Score=49.44 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=104.3
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee-EecccCccceEEEEEecCC
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK-HTLKDHTAEVQAVTVHATN 322 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~~p~~ 322 (526)
--.|+||+.. |..+..+.-..+.+-.+.|+.+.. |++...||+++||++-.... +.. ..+......|..+.+..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~i-e~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFI-ESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhh-cccccccccccCceeEEEEecCc
Confidence 3458888875 666665554445788999986654 66678999999999865311 110 0011122334444444345
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC---cEEEEEe-CCCcEEEEECCCC-ceeeEecC
Q 009763 323 KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---LILGTGT-SEALVKIWDVKSQ-ANVAKFDG 397 (526)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~g~-~dg~i~iwd~~~~-~~~~~~~~ 397 (526)
-.++ ..+|.+.+-+-........+... +....+..|-...+++ ..++-.. ..+ ..++-.... .....+..
T Consensus 140 Vavl--t~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 140 VAVL--TVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW 214 (829)
T ss_pred eEEE--ecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC
Confidence 3333 34455544332222222233211 1111111222222221 1111111 111 111211111 12223333
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 398 ~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
..+.+..+..||+..+|+.-...| |.+-+....+....+....+ .+...++|..+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGND 271 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCC
Confidence 346788999999999999988888 88888877777777765443 333467775544
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.73 E-value=0.71 Score=45.69 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=83.1
Q ss_pred cceeEEEEecCCCEEEEEe-----------CCC-cEEEEeCCC-CCceeeeEecccCccceEEEEEecCCCEEEEEECCC
Q 009763 266 KKVTSVKFVTEGDLFLTGS-----------ADK-TVRVWQGSE-DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN 332 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 332 (526)
.....|+|.++|+++++-. ..+ .|.+++-.+ .+.......+.........+++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3467788999988766642 223 676665432 23333333443334456889999888 444 44444
Q ss_pred eEEEEeCCCC-----eEEEEeecCCCC--CCCCCeeEEEEccCCcEEEEEeCC-------------------CcEEEEEC
Q 009763 333 TWCFYDLSSG-----ICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTGTSE-------------------ALVKIWDV 386 (526)
Q Consensus 333 ~i~iwd~~~~-----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~d-------------------g~i~iwd~ 386 (526)
.+++.|.... +....+...... .+......+.|.|||.+.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 211112211111 123457789999999876654421 34555555
Q ss_pred CCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC
Q 009763 387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 420 (526)
..++. ..+.........++|+++|.++++-..+
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 54432 2232223446789999999888775544
No 426
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.73 E-value=0.73 Score=45.83 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=84.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCc-e-eeeEecccCccceEEEEEec----CCCEEEEEECCCeEEEEeCCCC--e----
Q 009763 276 EGDLFLTGSADKTVRVWQGSEDGN-Y-DCKHTLKDHTAEVQAVTVHA----TNKYFVTASLDNTWCFYDLSSG--I---- 343 (526)
Q Consensus 276 ~~~~l~s~s~dg~i~iwd~~~~~~-~-~~~~~~~~h~~~v~~l~~~p----~~~~l~s~s~dg~i~iwd~~~~--~---- 343 (526)
+.+.+++||..|.++||+....+. . ..+.. ..-..+|..+..-. .....++.=.-..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 345899999999999999855321 1 11111 23456787777532 2223333345577888876211 1
Q ss_pred ---EEEEeecCCCCCCCCCeeEEEEcc----C-CcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEE
Q 009763 344 ---CLTQVSDAGTDGRPEGYTSAAFHP----D-GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 415 (526)
Q Consensus 344 ---~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 415 (526)
.+..+..+.. ......+++-| . ..++.+-+.||.+.+|+-+.......+.. .--...+.|.+....|+
T Consensus 115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence 1222222212 12233344433 2 36788889999999999765443333332 22234467778777888
Q ss_pred EEeCCc-EEEEEc
Q 009763 416 TAAHDG-VKLWDL 427 (526)
Q Consensus 416 ~~~~d~-i~iwd~ 427 (526)
+++.+. +..|..
T Consensus 191 t~sss~~l~~Yky 203 (418)
T PF14727_consen 191 TASSSWTLECYKY 203 (418)
T ss_pred EecCceeEEEecH
Confidence 887775 777764
No 427
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.037 Score=54.59 Aligned_cols=142 Identities=16% Similarity=0.215 Sum_probs=95.1
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC-------EEEEEeCCCcEEEEeCCCCCceeeeEecccC
Q 009763 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-------LFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 309 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h 309 (526)
++.++.....++-.|++.|+.+....-|.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-.+. ..+...++|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeecc
Confidence 344555566788889999999999887776 77778887653 234566788899999875443 112122222
Q ss_pred ----ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEE
Q 009763 310 ----TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (526)
Q Consensus 310 ----~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 385 (526)
.....|.+-. ...++++||.+|.|++||- .+..-.+. .++...+|..+..+.+|.+|++.+ +..+.+.+
T Consensus 426 qy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTA----lPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTA----LPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhc----ccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 1234455443 3458999999999999997 44333332 224457899999999999887654 56677776
Q ss_pred CC
Q 009763 386 VK 387 (526)
Q Consensus 386 ~~ 387 (526)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 53
No 428
>PHA03098 kelch-like protein; Provisional
Probab=96.68 E-value=0.18 Score=52.82 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=94.2
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCcEEEE--ecccccceeEEEEecCCCEEEEEeCC-----CcEEEEeCCCCCc
Q 009763 233 YSKDVIATGGVDT------NAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDGN 299 (526)
Q Consensus 233 ~~~~~l~t~~~dg------~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~ 299 (526)
.++.+++.||.++ .+..||..+++-... +.........+. -++.+++.||.+ ..+..||..+. .
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-K 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC-c
Confidence 3566777777543 577788776544221 111111112222 267778888865 34777887663 3
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
+.....+...... .+++. -++..++.||.+ ..+..||+.+++....-.. .... .. .++ ...++.+++
T Consensus 370 W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r-~~-~~~-~~~~~~iyv 442 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH-YG-GCA-IYHDGKIYV 442 (534)
T ss_pred eeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc-cC-ceE-EEECCEEEE
Confidence 3333322211111 12222 256677777632 4588899988765432211 1011 11 122 233667777
Q ss_pred EEeCCC--------cEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCc
Q 009763 374 TGTSEA--------LVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLK 431 (526)
Q Consensus 374 ~g~~dg--------~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~ 431 (526)
.|+.++ .+.+||..+++-.. .+.........+.+ ++.+++.|+.+ .+.+||..+.+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 776532 38889987764322 11111111222233 66677776643 27788877643
No 429
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.66 E-value=0.00076 Score=65.41 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=42.4
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhc-----CCCCCCCCCCCcCc
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-----GKCPVTGEPLTMDD 49 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~ 49 (526)
.|.||-++.++|++| +|.|+|||-||.+|+... -+||.|--+|++++
T Consensus 538 ~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 538 ECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred eecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 599999999999999 799999999999998754 27999999999883
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.61 E-value=1.3 Score=47.89 Aligned_cols=198 Identities=11% Similarity=0.126 Sum_probs=117.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccc--------eeEEEEec----------------CCCEEEEEeCCCcEE
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK--------VTSVKFVT----------------EGDLFLTGSADKTVR 290 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~--------V~~l~~~~----------------~~~~l~s~s~dg~i~ 290 (526)
++.+++++.++.|.-.|..+|+.+-.+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777888899999999999988877633211 12233321 234788888999999
Q ss_pred EEeCCCCCceeeeEecccCccce-------------EEEEEec--CCCEEEEEEC----------CCeEEEEeCCCCeEE
Q 009763 291 VWQGSEDGNYDCKHTLKDHTAEV-------------QAVTVHA--TNKYFVTASL----------DNTWCFYDLSSGICL 345 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v-------------~~l~~~p--~~~~l~s~s~----------dg~i~iwd~~~~~~~ 345 (526)
-.|..++ +....+. ..+.| ..+.-.| .+..++.|+. +|.|+-+|.++|+.+
T Consensus 274 ALDA~TG---k~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTG---KLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCC---CEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9998887 3333332 11111 0111112 2445666643 688999999999998
Q ss_pred EEeecCCCCC-------------CCCCeeEEEEccCCcEEEEEeC------------------CCcEEEEECCCCceeeE
Q 009763 346 TQVSDAGTDG-------------RPEGYTSAAFHPDGLILGTGTS------------------EALVKIWDVKSQANVAK 394 (526)
Q Consensus 346 ~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~g~~------------------dg~i~iwd~~~~~~~~~ 394 (526)
-.+....... ....-...++.++..+++.+.. .+.|.-.|.++++..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 8876321100 0011134455665555554321 24566678888887776
Q ss_pred ecCCCC---------CeEEEEECC-CCC---EEEEEeCCc-EEEEEcCCCccceEE
Q 009763 395 FDGHVG---------AVTAISFSE-NGY---YLATAAHDG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 395 ~~~~~~---------~i~~l~~s~-~~~---~l~~~~~d~-i~iwd~~~~~~~~~~ 436 (526)
++.... ...-+.+.. +|+ .++.++.+| +.++|.++++.+...
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 653111 111122322 553 778888888 999999998876543
No 431
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.61 E-value=0.57 Score=43.05 Aligned_cols=190 Identities=15% Similarity=0.128 Sum_probs=116.1
Q ss_pred eeEEEEecCCCEEEEEeCCC--cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 009763 268 VTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 345 (526)
Q Consensus 268 V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~ 345 (526)
...+.|..+|.++-+.+.-| .|+.+|+.++... ....+. ..----.++.. ++..+...=.++...+||..+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-~~~~l~-~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-QSVPLP-PRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-EEEE-T-TT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-EEEECC-ccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 45678877888888887766 7899999886321 222222 11222334443 2333334446789999999999988
Q ss_pred EEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCC-----CCCeEEEEECCCCCEEEEEeCC
Q 009763 346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.++.-. ..=..++ .|+..|+.......++++|..+.+....+.-. -..++-+.|- +|...+-.-..
T Consensus 124 ~~~~y~------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 124 GTFPYP------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEE-S------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred EEEecC------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 888632 2344555 56777777777889999999888777666432 2245667775 56555554443
Q ss_pred c-EEEEEcCCCccceEEecC-------------CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 421 G-VKLWDLRKLKNFRSFESS-------------DSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 421 ~-i~iwd~~~~~~~~~~~~~-------------~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
. |...|..+++....+... ....-.+.|+++|.+..|++.+.. -++|.+
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV 258 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEV 258 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEE
Confidence 3 778888888776655321 013457899999998888887766 666655
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.60 E-value=0.78 Score=44.59 Aligned_cols=238 Identities=17% Similarity=0.195 Sum_probs=114.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec----ccCccceEEEEEecC---CCEEE-EEECC-------
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFV-TASLD------- 331 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~l~-s~s~d------- 331 (526)
..++|+|.|+|++|++ ...|.|++++... .....+..+ .........++++|+ +.+|. +.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 6699999998322 211222222 234457899999994 33333 33321
Q ss_pred -CeEEEEeCCCC-------eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc-------------EEEEECCCCc
Q 009763 332 -NTWCFYDLSSG-------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL-------------VKIWDVKSQA 390 (526)
Q Consensus 332 -g~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-------------i~iwd~~~~~ 390 (526)
..|.-|.+..+ +.+...... ..........+.|.|||.++++.+..+. |.-.+.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~ 158 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPD-TSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS 158 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES--CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred ceeeEEEeccCCccccccceEEEEEeCC-CCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence 24554555443 111111111 1122345677999999977776554332 2222221 11
Q ss_pred e-------------eeEe-cCCCCCeEEEEECCC-CCEEEEEe-CCc-EEEEEcCCCcc---------------------
Q 009763 391 N-------------VAKF-DGHVGAVTAISFSEN-GYYLATAA-HDG-VKLWDLRKLKN--------------------- 432 (526)
Q Consensus 391 ~-------------~~~~-~~~~~~i~~l~~s~~-~~~l~~~~-~d~-i~iwd~~~~~~--------------------- 432 (526)
. ...+ .++ .....++|+|. |.++++-. .+. =.|.-+..+..
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 0011 111 23567999998 66555422 222 22222222211
Q ss_pred --------ceEEecCCCCCCeeEEEEcC-------CCCEEEEEeCCeEEEEEecccC-cceeeeeecCCCCCcceEEEEE
Q 009763 433 --------FRSFESSDSETPTNSVDFDH-------SGSYLAVASADIRVYQVASVKA-DWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 433 --------~~~~~~~~~~~~i~~i~~s~-------~~~~l~~~~~di~v~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
...+. ....+..+.|.. .|.++++.-..-+||.+..... .......+.. .....+..+++
T Consensus 238 ~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~r~~~v~~ 313 (331)
T PF07995_consen 238 SCPGFVPPVFAYP---PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG-GFGGRPRDVAQ 313 (331)
T ss_dssp S-TTS---SEEET---TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT-TSSS-EEEEEE
T ss_pred CCCCcCccceeec---CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc-cCCCCceEEEE
Confidence 11111 123556666653 3455555544455555543211 1111122221 12448999999
Q ss_pred cCCCCEEEEEeCCCcEE
Q 009763 497 GPDAKYIAVGSMDRNLR 513 (526)
Q Consensus 497 s~~~~~l~s~~~dg~v~ 513 (526)
.|||.+.++.+.+|.|.
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999888888888874
No 433
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0026 Score=67.57 Aligned_cols=51 Identities=31% Similarity=0.450 Sum_probs=48.4
Q ss_pred ccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
-+|.+.++.+||+-|.||++=+|..|+.|+-..++||.|.+|||++++++-
T Consensus 873 DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn 923 (943)
T KOG2042|consen 873 DPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPN 923 (943)
T ss_pred CccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCC
Confidence 478899999999999999999999999999999999999999999999886
No 434
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0018 Score=64.55 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=47.5
Q ss_pred ccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
-++...++++||+-|.||..-+|+.|..|+-.-|+||.+..||++||.+|-
T Consensus 857 DPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn 907 (929)
T COG5113 857 DPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPN 907 (929)
T ss_pred CchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCC
Confidence 456678899999999999999999999999999999999999999998876
No 435
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.56 E-value=0.51 Score=41.92 Aligned_cols=212 Identities=12% Similarity=0.142 Sum_probs=105.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCC---CEEEEEECCCeEEEEeCC--CCeEEEEeecC
Q 009763 277 GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN---KYFVTASLDNTWCFYDLS--SGICLTQVSDA 351 (526)
Q Consensus 277 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~ 351 (526)
+.++.+--..|.|.-||+.....+ ..++.+ .++.++.+--.+ .+.+.++..-.|.-||.. ......++..-
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~--ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev 102 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVY--RAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEV 102 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheE--EEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeecccc
Confidence 334444445566777888764211 111221 113333332222 233333333334557733 33333333222
Q ss_pred CCCCCCCCeeEEEEccCCcEEEEEeCC---------CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-
Q 009763 352 GTDGRPEGYTSAAFHPDGLILGTGTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG- 421 (526)
Q Consensus 352 ~~~~~~~~v~~~~~~~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~- 421 (526)
.........+....+|+|++++-.-.| |.++.|-. +..+..+...-+--+.++|+.+.+.+.....-.
T Consensus 103 ~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 103 QPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred CchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCce
Confidence 222334567778889999984332222 23333322 122222222333446788988777666554443
Q ss_pred -EEEEE--cCCCcc-----ceEEecCC--CCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcce
Q 009763 422 -VKLWD--LRKLKN-----FRSFESSD--SETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKA 491 (526)
Q Consensus 422 -i~iwd--~~~~~~-----~~~~~~~~--~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v 491 (526)
|.-|| +.++.. +..+.... .....-.++++.+|.+.++.-+..+|+.++. .+.+.+..+... ...|
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp--~tGK~L~eiklP--t~qi 256 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP--TTGKILLEIKLP--TPQI 256 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC--CCCcEEEEEEcC--CCce
Confidence 66676 444332 21121110 0122344566778888877777777777765 344555555543 6689
Q ss_pred EEEEEcC
Q 009763 492 TCVKFGP 498 (526)
Q Consensus 492 ~~~~~s~ 498 (526)
++++|.-
T Consensus 257 tsccFgG 263 (310)
T KOG4499|consen 257 TSCCFGG 263 (310)
T ss_pred EEEEecC
Confidence 9999964
No 436
>PRK10115 protease 2; Provisional
Probab=96.55 E-value=1.5 Score=47.26 Aligned_cols=243 Identities=7% Similarity=0.019 Sum_probs=118.2
Q ss_pred CeEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC------CcEEEEe
Q 009763 225 GIVSLDIHYSKDVIATGGVD-----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQ 293 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------g~i~iwd 293 (526)
.+..+.++|+|++|+.+.+. ..+++.|+.+|..+...-.... ..++|.+|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46778899999988876432 3588889988764322211111 469999998866555432 3577778
Q ss_pred CCCCC-ceeeeEecccCccceE-EEEEecCCCEEEEEEC---CCeEEEEeCC--CCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 294 GSEDG-NYDCKHTLKDHTAEVQ-AVTVHATNKYFVTASL---DNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 294 ~~~~~-~~~~~~~~~~h~~~v~-~l~~~p~~~~l~s~s~---dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
+.++. .-.++. ........ .+..+.++++++..+. ++.+.+|+.. .+.....+... . .....+. +
T Consensus 206 lgt~~~~d~lv~--~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~~~~-~ 277 (686)
T PRK10115 206 IGTPASQDELVY--EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-K----DHEYSLD-H 277 (686)
T ss_pred CCCChhHCeEEE--eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-C----CCEEEEE-e
Confidence 77652 112222 22222233 2233447777655443 4568888843 33322222111 1 1122222 3
Q ss_pred cCCcEEEEEeCC---CcEEEEECCCCceeeEecCC-C-CCeEEEEECCCCCEEEEEeCCc---EEEEEcCCCccceEEec
Q 009763 367 PDGLILGTGTSE---ALVKIWDVKSQANVAKFDGH-V-GAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 367 ~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~-~-~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~ 438 (526)
..+.+++....+ ..|...++........+..+ . ..|..+.+. .+.++++...++ +.++|+... ....+..
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 333333333222 23444455421112233333 2 367888887 335555555555 667776433 3333331
Q ss_pred CCCCCCeeEEEEc--CCCC-EEEEEeCC---eEEEEEecccCcceeee
Q 009763 439 SDSETPTNSVDFD--HSGS-YLAVASAD---IRVYQVASVKADWNCIK 480 (526)
Q Consensus 439 ~~~~~~i~~i~~s--~~~~-~l~~~~~d---i~v~~~~~~~~~~~~~~ 480 (526)
.. ...+..+.++ +++. +++..++- ..+|.++.....+..+.
T Consensus 356 ~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 356 DD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred CC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 11 1223333344 4444 44443333 66666654433333333
No 437
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.022 Score=50.31 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=43.0
Q ss_pred CcccccCCCCCCc----eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccccC
Q 009763 1 MNCSISGEVPEEP----VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 1 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 55 (526)
++|+|+|..|-.- ++- -|||||+.+.+.+.= ...|++|+.+..++|.|.|..
T Consensus 112 fiCPvtgleMng~~~F~~l~-~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALR-CCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred eecccccceecceEEEEEEe-ccceeccHHHHHHhh--hccccccCCcccccCeEeeCC
Confidence 5799999998763 444 499999999887654 568999999999999999953
No 438
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.50 E-value=0.91 Score=44.13 Aligned_cols=237 Identities=16% Similarity=0.206 Sum_probs=114.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE---EEEe----cccccceeEEEEecC----CCEEEEEeCC--------
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTL----SGHSKKVTSVKFVTE----GDLFLTGSAD-------- 286 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~---~~~~----~~h~~~V~~l~~~~~----~~~l~s~s~d-------- 286 (526)
-++|+|.|+|+++++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999988775 5599999999 33433 3333 234456899999994 3333333321
Q ss_pred CcEEEEeCCCC-Cc---ee-eeEeccc---CccceEEEEEecCCCEEEEEECCCe---EEEEeCCCCeEEEEeecCCC--
Q 009763 287 KTVRVWQGSED-GN---YD-CKHTLKD---HTAEVQAVTVHATNKYFVTASLDNT---WCFYDLSSGICLTQVSDAGT-- 353 (526)
Q Consensus 287 g~i~iwd~~~~-~~---~~-~~~~~~~---h~~~v~~l~~~p~~~~l~s~s~dg~---i~iwd~~~~~~~~~~~~~~~-- 353 (526)
..|.-|..... .. .+ .+..+.. ....-..|.|.|+|.++++.+..+. ..-.+...++.+. +...+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilr-i~~dG~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILR-IDPDGSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEE-EETTSSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEE-ecccCcCC
Confidence 23433443332 01 11 1111111 2234567999999977776655432 0000001122221 111100
Q ss_pred -----------------CCCCCCeeEEEEccC-CcEEEEE-eCCCcEEEEECCCCc------------------------
Q 009763 354 -----------------DGRPEGYTSAAFHPD-GLILGTG-TSEALVKIWDVKSQA------------------------ 390 (526)
Q Consensus 354 -----------------~~~~~~v~~~~~~~~-~~~l~~g-~~dg~i~iwd~~~~~------------------------ 390 (526)
.++ .....++|+|. |.++++= +.++.=.|.-+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 001 22457899998 6665542 122222222222111
Q ss_pred -----eeeEecCCCCCeEEEEECC-------CCCEEEEEeCCc-EEEEEcCCCccceEEec--CCCCCCeeEEEEcCCCC
Q 009763 391 -----NVAKFDGHVGAVTAISFSE-------NGYYLATAAHDG-VKLWDLRKLKNFRSFES--SDSETPTNSVDFDHSGS 455 (526)
Q Consensus 391 -----~~~~~~~~~~~i~~l~~s~-------~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~--~~~~~~i~~i~~s~~~~ 455 (526)
++..+..| ..+..+.|.. .|.+|++.-..+ |...++.....+..... ......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 22223323 4567777764 344555555444 77777764433221111 22234789999999999
Q ss_pred EEEEEeCCeEEE
Q 009763 456 YLAVASADIRVY 467 (526)
Q Consensus 456 ~l~~~~~di~v~ 467 (526)
++++.+.+..||
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 998887666666
No 439
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.43 E-value=0.011 Score=38.50 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ 256 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~ 256 (526)
...|.+++|+|..++||.|..+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 440
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.41 E-value=0.057 Score=50.38 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=39.3
Q ss_pred cccccCCC-CCCc----eEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCcCcccc
Q 009763 2 NCSISGEV-PEEP----VVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVP 52 (526)
Q Consensus 2 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~ 52 (526)
.|+||..- ...| .|+ .|||.||+.||+..+... +.||.|+.+|...++.+
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 59998873 3333 677 599999999999987654 58999999999877543
No 441
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.38 E-value=2.1 Score=46.93 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=78.0
Q ss_pred CCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCC----ceeeEe-cCCC----------CCeEEEEECCCCCEEEEEeCCc
Q 009763 358 EGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ----ANVAKF-DGHV----------GAVTAISFSENGYYLATAAHDG 421 (526)
Q Consensus 358 ~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~----~~~~~~-~~~~----------~~i~~l~~s~~~~~l~~~~~d~ 421 (526)
.+...++|+| +...||+.+..|...|||+... .....+ .... ..-..+.|.++...|++++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4678899999 6679999999999999999211 111111 1111 2334788988888999988888
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCC--CCEEEEEeCCeEEEEEec
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS--GSYLAVASADIRVYQVAS 471 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~--~~~l~~~~~di~v~~~~~ 471 (526)
+.++|+.+......+........|..+.-++. +..++..+..|...++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 99999998766442333333567888888887 555555555576666643
No 442
>PHA03098 kelch-like protein; Provisional
Probab=96.38 E-value=0.37 Score=50.48 Aligned_cols=197 Identities=11% Similarity=0.086 Sum_probs=93.8
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeE
Q 009763 276 EGDLFLTGSADK------TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGIC 344 (526)
Q Consensus 276 ~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~ 344 (526)
++.+++.||.++ .+..||..+. .+.....+.........+. -++..++.||.+ ..+..||..++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 566777777543 4677887663 2322222221111122222 257777777765 3577888887765
Q ss_pred EEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC------CcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEE
Q 009763 345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLAT 416 (526)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~ 416 (526)
...-... ....-.++ ..-++.+++.|+.+ ..+..||+.+++-.. .+....... ++.. .++..++.
T Consensus 371 ~~~~~lp----~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~ 443 (534)
T PHA03098 371 REEPPLI----FPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVI 443 (534)
T ss_pred eeCCCcC----cCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEE
Confidence 4322111 11111122 22367777777732 358889987654321 111111111 2222 25666666
Q ss_pred EeCC---------cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeee
Q 009763 417 AAHD---------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTF 482 (526)
Q Consensus 417 ~~~d---------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~ 482 (526)
|+.+ .+.+||..+.+-...-...........+.+ ++.+++.|+.+ -.++.++.....|..+..+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCC
Confidence 6532 178888876543221111100111122222 56777777643 2334444445667766554
Q ss_pred cC
Q 009763 483 PD 484 (526)
Q Consensus 483 ~~ 484 (526)
+.
T Consensus 522 p~ 523 (534)
T PHA03098 522 PK 523 (534)
T ss_pred cc
Confidence 33
No 443
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.36 E-value=0.0047 Score=44.74 Aligned_cols=41 Identities=29% Similarity=0.523 Sum_probs=31.8
Q ss_pred cccccCCCC------------CCceEeCCCCeeeeHHHHHHHHHhcCCCCCCC
Q 009763 2 NCSISGEVP------------EEPVVSKNSGLLFEKRLIERHILDYGKCPVTG 42 (526)
Q Consensus 2 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 42 (526)
.|+|+.+.. +-|++...+||.|-..+|++|++.+.+||++.
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 377777766 33556667999999999999999999999873
No 444
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.34 E-value=0.013 Score=51.60 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=62.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CcEEEEecccccceeEE-EEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCc-
Q 009763 234 SKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSV-KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT- 310 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l-~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~- 310 (526)
-+.-+++|+.+|.|.+|+... +.....+..-...|.+. .-..++.+..+++.||.|+.|++... +.+.....|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~ 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNF 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccC
Confidence 356789999999999999762 11111122222223222 22235568899999999999998765 4444444565
Q ss_pred cceEEEEEecCCCEEEEE--ECCCeEEEEeCCC
Q 009763 311 AEVQAVTVHATNKYFVTA--SLDNTWCFYDLSS 341 (526)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~--s~dg~i~iwd~~~ 341 (526)
.++..+.....+.++..+ |.|..++.|++..
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 444444444455555555 5566666666543
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=96.26 E-value=0.38 Score=49.48 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=92.1
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcEEE--EecccccceeEEEEecCCCEEEEEeCC--CcEEEEeCCCCCceeeeE
Q 009763 234 SKDVIATGGVDT-----NAVLFDRPSGQIVT--TLSGHSKKVTSVKFVTEGDLFLTGSAD--KTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 234 ~~~~l~t~~~dg-----~v~vwd~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~ 304 (526)
++.++++||.++ .+..||..++.-.. .+.........+ .-++.+.+.||.+ .++..||..+ +.+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~-n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGD-AAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCC-CeEEECC
Confidence 456677787643 46678876654322 111111111122 2367777788754 3577888654 3344333
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCC---eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
.+....... +++. -+|...+.||.++ .+..||.+++.....-.. ..+..-.++ ..-++.+.+.| |.+
T Consensus 348 ~l~~~r~~~-~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m----~~~r~~~~~-~~~~~~IYv~G---G~~ 417 (480)
T PHA02790 348 SLLKPRCNP-AVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST----YYPHYKSCA-LVFGRRLFLVG---RNA 417 (480)
T ss_pred CCCCCCccc-EEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC----CCccccceE-EEECCEEEEEC---Cce
Confidence 332111111 2222 2677778877653 477899887765442211 111111122 23367777777 457
Q ss_pred EEEECCCCcee--eEecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCC
Q 009763 382 KIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKL 430 (526)
Q Consensus 382 ~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~ 430 (526)
.+||..+++-. ..+.........+.+ +|+..+.|+.+ .+..||..+.
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 88998766432 222211222223333 66777777643 1666666543
No 446
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.24 E-value=1.1 Score=42.48 Aligned_cols=233 Identities=15% Similarity=0.206 Sum_probs=102.1
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCC-CCCceeeeEecccC--ccceEEEEEecCCCEEEEEECCCeEEEEeCCC
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGS-EDGNYDCKHTLKDH--TAEVQAVTVHATNKYFVTASLDNTWCFYDLSS 341 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~ 341 (526)
...+.+|.|..+..-+++|. .+.| +... .+..++....-... .-....+.|.. ...+++ +..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCc-eEEEecCC
Confidence 45788999985555566654 4543 3333 33334333211111 12366777763 334444 4444 34444445
Q ss_pred CeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCC-Cce-eeEecCCCCCeEEEEECCCCCEEEEEeC
Q 009763 342 GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QAN-VAKFDGHVGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 419 (526)
|+.-..+... ...+.....+....++..++++ ..|.| |-... ++. ........+.+..+..+++|.+++++..
T Consensus 90 G~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~-~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 90 GKTWERVPLS--SKLPGSPFGITALGDGSAELAG-DRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp TSS-EE------TT-SS-EEEEEEEETTEEEEEE-TT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred CCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEc-CCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 5544443211 0111233444444445444444 34543 33222 222 2223445578899999999999999877
Q ss_pred Cc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 420 DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 420 d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
+. ..-||--...-. .... .....+.++.|+|++.+.+++... +++=+.......|.... .......-.+..++|.
T Consensus 165 G~~~~s~~~G~~~w~-~~~r-~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQ-PHNR-NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYR 241 (302)
T ss_dssp SSEEEEE-TT-SS-E-EEE---SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEES
T ss_pred ccEEEEecCCCccce-EEcc-CccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccccc-CCcccCceeeEEEEec
Confidence 77 667775432111 1111 125689999999998887766333 44333112222333211 1111123348999999
Q ss_pred CCCCEEEEEeCCCcE
Q 009763 498 PDAKYIAVGSMDRNL 512 (526)
Q Consensus 498 ~~~~~l~s~~~dg~v 512 (526)
+++...++|+ .|.+
T Consensus 242 ~~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 242 PPNEIWAVGG-SGTL 255 (302)
T ss_dssp SSS-EEEEES-TT-E
T ss_pred CCCCEEEEeC-CccE
Confidence 9888777665 5544
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.14 E-value=1.6 Score=43.36 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=56.5
Q ss_pred EEEecCCCCEEEEEeCCCcEEE---EeCC-----CCcEEEEecc---cc--cceeEEEEec-----------CCCEEEEE
Q 009763 228 SLDIHYSKDVIATGGVDTNAVL---FDRP-----SGQIVTTLSG---HS--KKVTSVKFVT-----------EGDLFLTG 283 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~~dg~v~v---wd~~-----~~~~~~~~~~---h~--~~V~~l~~~~-----------~~~~l~s~ 283 (526)
.++.+|++++||.+..+..+.+ |+.. .+.......+ +. ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999987776665 5321 1122222211 21 4688877754 34679999
Q ss_pred eCCCcEEEEeCCCCCceeeeEecccCccceEEEEEe
Q 009763 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319 (526)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 319 (526)
..+|.|++|.... ..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~G----~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTENG----VLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEeccc----hHHHHHhcCccceEEEEec
Confidence 9999999998643 2333334577788777764
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.12 E-value=1.6 Score=43.15 Aligned_cols=144 Identities=8% Similarity=0.124 Sum_probs=82.5
Q ss_pred CeEEEEecCCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--EEEEecccccceeEEEEecCCCEEEEEeCCCc
Q 009763 225 GIVSLDIHYSKDVIATGG-----------VDT-NAVLFDRPS--GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~-----------~dg-~v~vwd~~~--~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 288 (526)
....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456889999999877753 223 677776432 32 223443334456889999888 444 444443
Q ss_pred EEEEeCCCCC----ceeee-Eeccc----CccceEEEEEecCCCEEEEEECC-------------------CeEEEEeCC
Q 009763 289 VRVWQGSEDG----NYDCK-HTLKD----HTAEVQAVTVHATNKYFVTASLD-------------------NTWCFYDLS 340 (526)
Q Consensus 289 i~iwd~~~~~----~~~~~-~~~~~----h~~~v~~l~~~p~~~~l~s~s~d-------------------g~i~iwd~~ 340 (526)
.++.|..... ..+.+ ..+.. +......+.|.|+|.+.++.+.. |.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3444554322 11222 22322 23457789999999876655521 445566665
Q ss_pred CCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
.+.. ..+.. + ......++|+++|.++++-.
T Consensus 173 g~~~-e~~a~----G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKL-RVVAH----G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeE-EEEec----C-cCCCccceECCCCCEEEEcc
Confidence 5443 22221 2 13456899999998877644
No 449
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.09 E-value=1.2 Score=41.41 Aligned_cols=152 Identities=12% Similarity=0.061 Sum_probs=89.0
Q ss_pred CeEEEEecCCCCEEEEEe---CCCcEEEEeCCCCcEEEE-ecccccceeEEEEecCCCEEEEEeCCCcEEEEe-CCCCCc
Q 009763 225 GIVSLDIHYSKDVIATGG---VDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ-GSEDGN 299 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~---~dg~v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd-~~~~~~ 299 (526)
.+.+.++++++..+|... ....++++.. +..... +.+ ..+..-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 678999999999776655 2334555443 333222 233 3688889999988777766667777774 222211
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEE---CCCeEEEEeCCCCeEE--EEeecC--CCCCCCCCeeEEEEccCCcEE
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICL--TQVSDA--GTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~l 372 (526)
.........-...|..+.++|||..++... .++.|.+--+.....- ..+... ........+..+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 111111111222899999999999877665 3567776654321110 111000 011223578999999999888
Q ss_pred EEEeCCCc
Q 009763 373 GTGTSEAL 380 (526)
Q Consensus 373 ~~g~~dg~ 380 (526)
+.+...+.
T Consensus 181 V~~~~~~~ 188 (253)
T PF10647_consen 181 VLGRSAGG 188 (253)
T ss_pred EEeCCCCC
Confidence 87766543
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.08 E-value=1.7 Score=43.13 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=86.4
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCcc-----ce
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN-----FR 434 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~-----~~ 434 (526)
...+...+++.+++.|.....++-||--...-...-......+..+.|.+++.+++++.. +-.++....++. ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC-ceEEEecCCCCccccccee
Confidence 344566778887777765433334443211101111223457899999999988877654 434444444431 22
Q ss_pred EEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 009763 435 SFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 514 (526)
..........+..+.|.+++..+++|... .++......++|.....-... ......+.|.++++-+++| .+|.|.-
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-~v~~s~D~G~tW~~~~~~~~~--~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAGGSG-ILLRSTDGGKSWKRDKGADNI--AANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEECCC-cEEEeCCCCcceeEccccCCC--CcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 22221113458899999888887777655 333333444566665432222 4567899998776655555 6888765
Q ss_pred e
Q 009763 515 F 515 (526)
Q Consensus 515 w 515 (526)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 451
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.04 E-value=0.029 Score=36.44 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=29.8
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
...|..++|+|...+||.|+.||.|.+|.++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 557999999999999999999999999999543
No 452
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.83 E-value=0.0067 Score=39.00 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=32.2
Q ss_pred ccccCCCC---CCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCC
Q 009763 3 CSISGEVP---EEPVVSKNSGLLFEKRLIERHILDYGKCPVTGE 43 (526)
Q Consensus 3 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 43 (526)
|+|..+.. +.|+++ .+||+|....|.+......+||+++.
T Consensus 2 C~~C~~~~~~~~~~~l~-~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLT-SCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEc-ccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 67777776 357888 59999999999999955568999863
No 453
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.83 E-value=1.6 Score=40.62 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=88.1
Q ss_pred ceeEEEEecCCCEEEEEe---CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEe-CCCC
Q 009763 267 KVTSVKFVTEGDLFLTGS---ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD-LSSG 342 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd-~~~~ 342 (526)
.+.+.+++++++.++... ....+.++.... ..... +. ...+..-.|++++...+....+....++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~--~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPV--LT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceee--cc--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999776655 233455554332 11221 12 23677888999987777766666666663 3333
Q ss_pred eEE-EEeecCCCCCCCCCeeEEEEccCCcEEEEEe---CCCcEEEEECC---CC------ceeeEecCCCCCeEEEEECC
Q 009763 343 ICL-TQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVK---SQ------ANVAKFDGHVGAVTAISFSE 409 (526)
Q Consensus 343 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~---~~------~~~~~~~~~~~~i~~l~~s~ 409 (526)
... ..+... .....|..+.++|||..++.-. .++.|.+--+. .+ ............+..+.|.+
T Consensus 99 ~~~~~~v~~~---~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 99 TGEPVEVDWP---GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred cceeEEeccc---ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 322 222211 1112799999999998777665 34667766543 12 11111222346889999999
Q ss_pred CCCEEEEEeCCc
Q 009763 410 NGYYLATAAHDG 421 (526)
Q Consensus 410 ~~~~l~~~~~d~ 421 (526)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998887776654
No 454
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.78 E-value=1.6 Score=43.99 Aligned_cols=138 Identities=9% Similarity=0.017 Sum_probs=73.4
Q ss_pred CCcEEEEECCCCceeeEe-cCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
.|.+.+-+-.++..+... ......|+.+++...|..-+....+|+..|+..+.-....-......+.+..+.=+|+++
T Consensus 353 ~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns- 431 (671)
T COG3292 353 IGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS- 431 (671)
T ss_pred cceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-
Confidence 344444555555544443 223356777778775544444444478888877722222222222256788888899999
Q ss_pred EEEEeCCeEEEEEecccCcceeeeeecCC-CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 457 LAVASADIRVYQVASVKADWNCIKTFPDL-SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 457 l~~~~~di~v~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
|..|+.++-+|.-.....-.+.+ .+..+ ...+.+..+.+.++|+.-+.. .+| |..|+-.+
T Consensus 432 LWIGTs~Glvk~~pe~~~v~n~l-n~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g-va~~~sq~ 492 (671)
T COG3292 432 LWIGTSGGLVKRDPESGRVLNLL-NPGSHGLDGSRVEQLGLGPDGRLWLAA-GSG-VAAWESQR 492 (671)
T ss_pred EEEeccCCeEecCccccchhccc-ccccCcCCcchhhhhccCCCCceEEEe-cce-eeeecccc
Confidence 77787776666542211111111 11111 123456778888898854333 244 46666544
No 455
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.0035 Score=56.76 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=40.1
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPL 45 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 45 (526)
-|-|+.+...+|||| +|||.|+..|-.+.++.+.+|++|+++.
T Consensus 243 ~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred cccccccccccchhh-cCCceeehhhhccccccCCcceeccccc
Confidence 399999999999999 7999999999999999899999999754
No 456
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.73 E-value=2.5 Score=42.10 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=56.0
Q ss_pred CCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCC-eEEEEECCC-----------------CCEEEEE-e
Q 009763 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA-VTAISFSEN-----------------GYYLATA-A 418 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~-----------------~~~l~~~-~ 418 (526)
..+.+++.+|++.+.++...-|.|.++|+.++..++.+++..+. +.-+..... ..+|+.- -
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 44778999999999999888899999999999888777764432 111111111 1234433 3
Q ss_pred CCc-EEEEEcCCCccceEEecC
Q 009763 419 HDG-VKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 419 ~d~-i~iwd~~~~~~~~~~~~~ 439 (526)
..| |-||+++.+..+..+...
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEeC
Confidence 345 999999998877766553
No 457
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.68 E-value=0.29 Score=50.96 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc--CCCCEEEEEeCC--eEEEE-----E
Q 009763 400 GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD--HSGSYLAVASAD--IRVYQ-----V 469 (526)
Q Consensus 400 ~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s--~~~~~l~~~~~d--i~v~~-----~ 469 (526)
..+.-+.-+.-++.-++.+... +.|||.+.+.....-.. .....|.++.|. |+|+.+++.|-. +.+|. +
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3445555555455544433333 99999998774433333 235788888885 677766655554 66663 2
Q ss_pred ecccCcceeeeeecCCCCC-cceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 470 ASVKADWNCIKTFPDLSGT-GKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
......|..+..+....+. .+|.+..|.++|.+++.+| +.+.|++=
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 3334556666655433222 5789999999997665553 56777764
No 458
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.61 E-value=0.36 Score=50.23 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=71.6
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec-CCCCCeEEEEEC--CCCCEEEEEeCCc-EEEEEcC-------
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFS--ENGYYLATAAHDG-VKLWDLR------- 428 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s--~~~~~l~~~~~d~-i~iwd~~------- 428 (526)
..-+.-+.-++..++......+.|||.+.+.....-. ...+.|..+.|. |+|+.+++.+-.. |.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444555554455679999999876433322 346789999886 4677766666665 8877431
Q ss_pred --CCccceEEecCCC-CCCeeEEEEcCCCCEEEEEeCCeEEEEE
Q 009763 429 --KLKNFRSFESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQV 469 (526)
Q Consensus 429 --~~~~~~~~~~~~~-~~~i~~i~~s~~~~~l~~~~~di~v~~~ 469 (526)
+...++.+....+ ..+|.+..|-++|.+++.+++.+.||+-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 1223445544333 4689999999999998888877888863
No 459
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.013 Score=55.47 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=41.0
Q ss_pred cccccCCCCCC---ceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCcCccccccC
Q 009763 2 NCSISGEVPEE---PVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~ 55 (526)
.|+||-|-.++ =.+-| |+|.|-+.||..||-++++ ||+|....--+-..+...
T Consensus 231 ~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~ 287 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVS 287 (348)
T ss_pred eEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCcc
Confidence 69999888665 36666 9999999999999999987 999998544443334433
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.39 E-value=2.6 Score=41.94 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=85.6
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC-------EEEEEECCCeEEEEeCCC-CeEEE
Q 009763 276 EGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSS-GICLT 346 (526)
Q Consensus 276 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------~l~s~s~dg~i~iwd~~~-~~~~~ 346 (526)
+.++++ .|+....++-.|++.+ +.+....-|..- -+.|.|..+ .-+.|-.+..|.-.|.+- |..+.
T Consensus 478 dssli~~dg~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 344433 3445555666677665 555555555443 466666432 223344455555556543 32222
Q ss_pred EeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEE
Q 009763 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD 426 (526)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd 426 (526)
....... .......+..-. ...++++|+..|.|++||.-.-.....+.+....|..+..+.+|.++++.+...+.+-|
T Consensus 553 v~esKdY-~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d 630 (776)
T COG5167 553 VVESKDY-KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTD 630 (776)
T ss_pred eeeehhc-cccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEe
Confidence 2211101 111122222222 34589999999999999965444444556667789999999999999998888788888
Q ss_pred cC
Q 009763 427 LR 428 (526)
Q Consensus 427 ~~ 428 (526)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 75
No 461
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.37 E-value=2.2 Score=46.19 Aligned_cols=178 Identities=16% Similarity=0.160 Sum_probs=105.8
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc--EEEEEe-----------CCCcEEEEECC-CCceeeEec--C
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL--ILGTGT-----------SEALVKIWDVK-SQANVAKFD--G 397 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~-----------~dg~i~iwd~~-~~~~~~~~~--~ 397 (526)
|+++|..+++.+..+..... .....+..+.|+.... ++++|. .+|.++.|++- .++.+.-+. .
T Consensus 855 I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred EEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 67777777776666553322 2234566666766332 344443 23456777653 333222221 1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCc
Q 009763 398 HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 475 (526)
Q Consensus 398 ~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 475 (526)
-.+.| .+..|.+.++.+|-.+.+++||+-+.+..+..........|..+.+ .+..+++|... +.++.++. .
T Consensus 934 ~~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~---~ 1006 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRR---E 1006 (1205)
T ss_pred CCccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEec---C
Confidence 22334 3455666677777766699999988877766655433455666665 46778888766 77777643 3
Q ss_pred ceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 476 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 476 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.+.+..+....-...|+++.+- |...++.+..-|.+.+-.++..
T Consensus 1007 ~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 3344444443334567776665 5556888888899988888754
No 462
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.37 E-value=4.9 Score=43.22 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=52.9
Q ss_pred ccceEEEEEecCCCEEEEEECCCeEEEEeCCC----------CeE--E-EEeec---CCCCCCCCCeeEEEEccC---Cc
Q 009763 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSS----------GIC--L-TQVSD---AGTDGRPEGYTSAAFHPD---GL 370 (526)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~----------~~~--~-~~~~~---~~~~~~~~~v~~~~~~~~---~~ 370 (526)
.-.|..|.++|+|.+++..|..|-+.+ .+.. |+. . ..+.. .........|..+.|||. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 346899999999999999888665443 3321 111 1 11110 001233457889999995 58
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 009763 371 ILGTGTSEALVKIWDVKSQ 389 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~ 389 (526)
.|++-+.|+.+++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8889999999999999754
No 463
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.0059 Score=53.09 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=43.3
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHH--hcCCCCC--CCCCCCcCccc
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHIL--DYGKCPV--TGEPLTMDDIV 51 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~--~~~~~~~~~~~ 51 (526)
.|+|+-.+-..|.+|.||.|.|||.+|.+|++ ..-.||. |..-+.+++++
T Consensus 191 rCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v 244 (275)
T COG5627 191 RCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYV 244 (275)
T ss_pred cCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchh
Confidence 59999999999999999999999999999998 4456897 76667777666
No 464
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.27 E-value=4.2 Score=41.79 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=76.2
Q ss_pred CCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCc-cceEEEEEecC
Q 009763 243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHAT 321 (526)
Q Consensus 243 ~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~ 321 (526)
..+...++|.. |.....+.........+...++|.+++..+ +.+..+|+... ......+.+.. ..=..+...|+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~--v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK--VIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC--EEEeeecCCcccccccccEECCC
Confidence 44556666654 555555443222222266778898776555 67888887642 11122222210 11235667789
Q ss_pred CCEEEEEEC-------------CCeEEEEeCCCCeEEEEeecCCCC----------------------CCCCCeeEEEEc
Q 009763 322 NKYFVTASL-------------DNTWCFYDLSSGICLTQVSDAGTD----------------------GRPEGYTSAAFH 366 (526)
Q Consensus 322 ~~~l~s~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~ 366 (526)
|++|+.+.. .-.|..+| .+|+.+..+.....- ..-..++++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 999888772 22466777 788777765422110 000247889999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCceeeEecCC
Q 009763 367 P-DGLILGTGTSEALVKIWDVKSQANVAKFDGH 398 (526)
Q Consensus 367 ~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 398 (526)
+ ++.+++++-.-..|...|.++++....+-.+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 9 6677777666668999998888877776543
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.14 E-value=0.049 Score=57.10 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=96.1
Q ss_pred cccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCC--CCcEE-----EEecccccceeEEEEec---CCCEEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRP--SGQIV-----TTLSGHSKKVTSVKFVT---EGDLFLTGSAD 286 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~--~~~~~-----~~~~~h~~~V~~l~~~~---~~~~l~s~s~d 286 (526)
+.++-.++|-.+.|... -..++ -.-|.+.||++. .|+.. +........+.-+.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 44555677777777542 11222 234678889864 34332 22223334455666665 55677778888
Q ss_pred CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
+.|++.+++.. ....+.+|...+..++|...|-..+. .++
T Consensus 205 ~~i~lL~~~ra----~~~l~rsHs~~~~d~a~~~~g~~~l~------------------------------------~lS 244 (1283)
T KOG1916|consen 205 GEIRLLNINRA----LRSLFRSHSQRVTDMAFFAEGVLKLA------------------------------------SLS 244 (1283)
T ss_pred CceeEeeechH----HHHHHHhcCCCcccHHHHhhchhhhe------------------------------------eeC
Confidence 99998887663 22455678888887776543321111 045
Q ss_pred cCCcEEEEEeCCCcEEEEEC-----CCCceeeEecCCC-CCeEEEEECCC-------CC--EEEEEeCCc--EEEEEcCC
Q 009763 367 PDGLILGTGTSEALVKIWDV-----KSQANVAKFDGHV-GAVTAISFSEN-------GY--YLATAAHDG--VKLWDLRK 429 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~-----~~~~~~~~~~~~~-~~i~~l~~s~~-------~~--~l~~~~~d~--i~iwd~~~ 429 (526)
|||..|+.+..||.+++|.+ +...++..++.|. .+-.|.-|+.+ ++ +++++++-+ +++|....
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 56666666666665555543 2233444455554 22223223322 22 344554443 99999887
Q ss_pred Cccc
Q 009763 430 LKNF 433 (526)
Q Consensus 430 ~~~~ 433 (526)
.++.
T Consensus 325 w~Cl 328 (1283)
T KOG1916|consen 325 WQCL 328 (1283)
T ss_pred hhhh
Confidence 7776
No 466
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.3 Score=52.83 Aligned_cols=142 Identities=11% Similarity=0.037 Sum_probs=83.5
Q ss_pred CeeEEEEccCCcEEEEEeC--CCcEEEEECCCCceee-----Ee------cCCCCCeEEEEECCCC-CEEEEEeCCc-EE
Q 009763 359 GYTSAAFHPDGLILGTGTS--EALVKIWDVKSQANVA-----KF------DGHVGAVTAISFSENG-YYLATAAHDG-VK 423 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~-----~~------~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~ 423 (526)
.+..+...+|+...++... +-.|..||+++...-. -+ ........++.|+|.- ...+++..|. |+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555666667655554433 3378999997642211 11 1122345678888863 2334444554 77
Q ss_pred EEEcCCCcc-ceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCC--CCCcceEEEEEcCCC
Q 009763 424 LWDLRKLKN-FRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPDA 500 (526)
Q Consensus 424 iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~ 500 (526)
+.-+..... ...+.. ....++++|+|.|+.+++|..++.+-.+. ........+... .....|.+++|-...
T Consensus 182 V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~---P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYE---PSLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEee---cccceeecccCCCcCCCcceeEEEEecce
Confidence 776543322 222222 46789999999999999999986666652 222322222221 124689999998776
Q ss_pred CEEEEE
Q 009763 501 KYIAVG 506 (526)
Q Consensus 501 ~~l~s~ 506 (526)
.+|++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666653
No 467
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.07 E-value=2.7 Score=38.52 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=137.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
.-..++-.+||..-+++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++....+...
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44577778899888888888888888888888777665666666778888888766654433 34444544432111111
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 384 (526)
....-........|.+.|++-+++.. |..--.|..++ .+..+... .-..-+.++..|||..-++.-.+..|-..
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaP----qG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAP----QGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccC----CCCCCcceEECCCCcEEEEeccccceEEc
Confidence 12223456788899999998888753 21111121111 11222111 11346788999999999888888888888
Q ss_pred ECCCCceeeEec---CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 385 DVKSQANVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 385 d~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
|..++.. ..+. .....-..+--+|.|..-++....+ +.-||-.... -..+..........++..+..++.-+
T Consensus 216 dp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 216 DPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred ccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEe
Confidence 8877632 2222 1122344555667777766655555 8888876544 45555555455666777666665544
No 468
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.03 E-value=2.4 Score=37.81 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=84.1
Q ss_pred cceeEEEEecCCCEEEEEeCC---------CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEE-EEEECCCeEE
Q 009763 266 KKVTSVKFVTEGDLFLTGSAD---------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYF-VTASLDNTWC 335 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l-~s~s~dg~i~ 335 (526)
...+.-..+|+|++++-.-.| |.++.|-.... +..+...-.--+.++|+.+.+.+ +.-+.+-.|.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-----VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCC-----ceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 345566678999874322222 34444433221 11111222334577887666544 4445566777
Q ss_pred EEe--CCCCe-----EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEEC
Q 009763 336 FYD--LSSGI-----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 336 iwd--~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (526)
-|| ..+|. .+..+.......+ -..-.+++..+|++.++.-..|+|.-+|..+|+.+..++-....|+|++|-
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 777 55543 2333332211111 122345667789999999999999999999999999998888899999995
Q ss_pred C
Q 009763 409 E 409 (526)
Q Consensus 409 ~ 409 (526)
-
T Consensus 263 G 263 (310)
T KOG4499|consen 263 G 263 (310)
T ss_pred C
Confidence 4
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=1.5 Score=38.38 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=96.5
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCCceeeeEecccCc
Q 009763 234 SKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310 (526)
Q Consensus 234 ~~~~l~t~~~--dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 310 (526)
+|.++.+.+. ...|++||+.+|+.+.+-.-....+..=-...-++.+ .-.-.+|.-.+||..+- +++..+. ..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~-y~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFS-YE 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhcccc-cC
Confidence 4566666554 3469999999998876544221112111111123332 23346788888887664 4444433 33
Q ss_pred cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc
Q 009763 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 390 (526)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 390 (526)
+.=+.++. ++..|+.++...++..-|.++.....++........-..++.+.|- +|.+.|-.-.+..|...|..+|+
T Consensus 131 GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 131 GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 44455554 5666777766677777777665443333211010111223333332 56666655556666677777777
Q ss_pred eeeEec------------CCCCCeEEEEECCCCCEEEEEe
Q 009763 391 NVAKFD------------GHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 391 ~~~~~~------------~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
.+..+. .+..-.+.+++.|++..|...+
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 665542 2344678899999874444433
No 470
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.85 E-value=5.8 Score=41.21 Aligned_cols=256 Identities=15% Similarity=0.194 Sum_probs=120.6
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccc-ccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCCceeeeEecc
Q 009763 232 HYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGH-SKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLK 307 (526)
Q Consensus 232 s~~~~~l~t~~~dg~v~vwd~~~~~--~~~~~~~h-~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 307 (526)
..++..++.+..+|.+....+.... .....-+. ....+++.+..+| .+|+.||.-|.=.++.+.. .....+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~-~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISL-SNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEES-ESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeC-CCcEEEEecc
Confidence 4567788889999999888765433 11222223 4556777777655 4777787655444444332 3345555554
Q ss_pred cCccceEEEEEecC----CC------EEEEEE---CCCeEEEEeCCCCeEEE--EeecCCCCCCCCCeeEEEEcc-CCcE
Q 009763 308 DHTAEVQAVTVHAT----NK------YFVTAS---LDNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAAFHP-DGLI 371 (526)
Q Consensus 308 ~h~~~v~~l~~~p~----~~------~l~s~s---~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~ 371 (526)
.-++|..+++-+. .. .+++++ .+|.+++..- |-... ........+ ...++.+.... +..+
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPG-VTGIWTLKLSSSDHSY 373 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEEST-EEEEEEE-SSSSSBSE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCC-ceEEEEeeecCCCceE
Confidence 4478888888531 12 555554 3678887742 22222 111110101 12344444332 2456
Q ss_pred EEEEeCCCcEEEEECC---CCceeeE-----ecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCC
Q 009763 372 LGTGTSEALVKIWDVK---SQANVAK-----FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~---~~~~~~~-----~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
|+.+..+ .-+++.+. ....+.. |......+.+-.+. +..++=....+|++.+....+....+.... ..
T Consensus 374 lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~-~~ 449 (504)
T PF10433_consen 374 LVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPA-GS 449 (504)
T ss_dssp EEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TT-S-
T ss_pred EEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCC-CC
Confidence 6666554 34455553 2333322 22122234333333 456666666779999988877776665442 45
Q ss_pred CeeEEEEcCCCCEEEEE-eCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 444 PTNSVDFDHSGSYLAVA-SADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~-~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
.|...+... +..+++. +..+..+.++............ .......|.|+...|
T Consensus 450 ~I~~a~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 450 IIVAASIND-PQVLVALSGGELVYFELDDNKISVSDNDET-ILELDNEISCLSIEP 503 (504)
T ss_dssp --SEEEESS-SEEEEEE-TTEEEEEEEETTEEEEEEE-----EE-SS-EEEEE---
T ss_pred eEEEEEECC-CEEEEEEeCCcEEEEEEECCceeeeeeccc-cccCCCceEEEEeCC
Confidence 666666654 3333333 3337777774432211111010 000255788887765
No 471
>PRK10115 protease 2; Provisional
Probab=94.84 E-value=7.1 Score=42.18 Aligned_cols=193 Identities=5% Similarity=-0.012 Sum_probs=96.9
Q ss_pred cceeEEEEecCCCEEEEEeC-----CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC------CeE
Q 009763 266 KKVTSVKFVTEGDLFLTGSA-----DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTW 334 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i 334 (526)
-.+..+.|+|++++|+.+.. ...|++.|+.++.. ....+.+ . -..++|.++++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34667889999998776533 23588888876521 1111211 1 1468999999876665442 368
Q ss_pred EEEeCCCC--eEEEEeecCCCCCCCCCee-EEEEccCCcEEEEEeC---CCcEEEEECC--CCceeeEecCCCCCeEEEE
Q 009763 335 CFYDLSSG--ICLTQVSDAGTDGRPEGYT-SAAFHPDGLILGTGTS---EALVKIWDVK--SQANVAKFDGHVGAVTAIS 406 (526)
Q Consensus 335 ~iwd~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~---dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~ 406 (526)
..+++.++ +....+... . .... .+..+.++.+++..+. ++.+.+|+.. .+.....+....+....+.
T Consensus 202 ~~h~lgt~~~~d~lv~~e~---~--~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEK---D--DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD 276 (686)
T ss_pred EEEECCCChhHCeEEEeeC---C--CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence 88888887 333333211 1 1222 3333447776655443 3578888853 3332222222222223332
Q ss_pred ECCCCCEEEEEeCCc----EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 407 FSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 407 ~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
+..+.+++....+. |...++........+..+.....+..+.+. .+.++++...+ -+++.++
T Consensus 277 -~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 -HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred -eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 22333333333332 444455432222333333223467777777 23333344434 4455443
No 472
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.79 E-value=0.014 Score=57.64 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=49.3
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+..+..+|+-+..|||.|++.+|.+++.++.+||.+...++.+++++.
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~ 74 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPV 74 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCc
Confidence 47999999999999976799999999999999999999999999999988873
No 473
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.76 E-value=1.7 Score=43.27 Aligned_cols=140 Identities=12% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-------cEEEEEeCCCcEEEEECCCCc-e
Q 009763 321 TNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-------LILGTGTSEALVKIWDVKSQA-N 391 (526)
Q Consensus 321 ~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~g~~dg~i~iwd~~~~~-~ 391 (526)
+.+++ ..|+....++-.|++.|+.+..+... ..+ -+.|.|+. ..-++|-++..|.-.|.|-.. .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLK------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecC------Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 34443 34555667888899999988887632 123 56666642 123445566667667776432 2
Q ss_pred eeE--ecC--CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eE
Q 009763 392 VAK--FDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IR 465 (526)
Q Consensus 392 ~~~--~~~--~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~ 465 (526)
+.. ++. ......+..-.. ..++++++..| |++||--..+.-..+... +..|..+..+.+|.++++.+.. +.
T Consensus 551 i~v~esKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred eeeeeehhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEeecceEE
Confidence 211 111 112233333333 34788888888 999996433322223222 5678899999999999988887 66
Q ss_pred EEEEe
Q 009763 466 VYQVA 470 (526)
Q Consensus 466 v~~~~ 470 (526)
+-++.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 66653
No 474
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=0.4 Score=51.96 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=88.2
Q ss_pred ceEEEEEecCCCEEEEE--ECCCeEEEEeCCCCeEEEEeecC------CCCCCCCCeeEEEEccCC-cEEEEEeCCCcEE
Q 009763 312 EVQAVTVHATNKYFVTA--SLDNTWCFYDLSSGICLTQVSDA------GTDGRPEGYTSAAFHPDG-LILGTGTSEALVK 382 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~ 382 (526)
++..+...+|+...++. +.+-.|..||+++-......... ..........++.|+|.- ...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566666676654433 34457889998754322111000 001122345678888832 3455666788888
Q ss_pred EEECCCCce-eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC--CCCeeEEEEcCCCCEEE
Q 009763 383 IWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 383 iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~s~~~~~l~ 458 (526)
+..+..... +..+. .....++++|+|.|+.++.|..+| +.-|-.. ++....+..... ...|.+++|-....+++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 887754332 22222 345789999999999999999988 7666532 222222222211 46789999988888877
Q ss_pred EE
Q 009763 459 VA 460 (526)
Q Consensus 459 ~~ 460 (526)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 63
No 475
>PHA02790 Kelch-like protein; Provisional
Probab=94.71 E-value=2 Score=44.30 Aligned_cols=184 Identities=10% Similarity=0.029 Sum_probs=91.4
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC--CcEEEEECCCCcee-
Q 009763 321 TNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--ALVKIWDVKSQANV- 392 (526)
Q Consensus 321 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~- 392 (526)
++..++.||.+ ..+..||..++.....-... ...... ++ ..-++.+.++|+.+ ..+..||..+++-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~---~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN---SPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC---chhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 34555666644 24677888877654432211 111111 22 23477888888764 35788887655322
Q ss_pred -eEecCCCCCeEEEEECCCCCEEEEEeCCc----EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEE
Q 009763 393 -AKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVY 467 (526)
Q Consensus 393 -~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~ 467 (526)
..+.........+.+ +|+..+.|+.++ +..||.++.+-...-......... ++ ..-+|.+.+.|+ ...+|
T Consensus 346 ~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG-~~e~y 420 (480)
T PHA02790 346 MPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR-NAEFY 420 (480)
T ss_pred CCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC-ceEEe
Confidence 122211112222233 677777776542 778887764322111110001111 12 223455555554 35666
Q ss_pred EEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEeeCCCC
Q 009763 468 QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 520 (526)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~l~~~ 520 (526)
+.. ...|..+...... ......+.+ +|++.+.||.+ ..|..||...+
T Consensus 421 dp~--~~~W~~~~~m~~~--r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CES--SNTWTLIDDPIYP--RDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCC--CCcEeEcCCCCCC--ccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 653 4668776655432 122222232 67777888754 35777877654
No 476
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.64 E-value=0.064 Score=35.44 Aligned_cols=44 Identities=27% Similarity=0.435 Sum_probs=29.5
Q ss_pred CcccccCCCCCCceEeCCCCee--eeHHHHHHHHHhcC--CCCCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLL--FEKRLIERHILDYG--KCPVTGEP 44 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~p~~~~~ 44 (526)
+.|+||+..++.||=+..+-|. |+-....++-.+++ +||++++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5799999999999999888876 99877777777666 59999875
No 477
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.043 Score=51.35 Aligned_cols=52 Identities=15% Similarity=0.370 Sum_probs=41.0
Q ss_pred cccccCCCCCC-c--------eEeCC---CCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 2 NCSISGEVPEE-P--------VVSKN---SGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 2 ~~~~~~~~~~~-~--------~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+|.||.+-+-+ | =.+|| |||+|-=.|+..|++...+||||..|+--|+=-++
T Consensus 289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~~~ 352 (491)
T COG5243 289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSSPT 352 (491)
T ss_pred eEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccCCCC
Confidence 69999776222 2 23344 99999999999999999999999999887765544
No 478
>PRK13684 Ycf48-like protein; Provisional
Probab=94.64 E-value=4.7 Score=39.23 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=83.7
Q ss_pred ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC
Q 009763 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 389 (526)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 389 (526)
...+..+.+.|++.+++++ ..|.+..-.-..++.-..... .....++++.+.+++.++++| ..|.+.+=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 4578899999887666554 456554321122222222221 223578999999999887776 4576543233333
Q ss_pred ceeeEecC----CCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEec-CCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 390 ANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 390 ~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
..-..... ....+..+.|.+++..++++ .++..+.....++....... .........+.|..+++.+++|...
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 32222111 12357889999888766655 45544455555554444332 1112357788888788887776654
No 479
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.63 E-value=2.5 Score=44.67 Aligned_cols=111 Identities=16% Similarity=0.257 Sum_probs=71.4
Q ss_pred CeEEEEECC--CCCEEEEEeCCc-EEEEEcCC-------C-------------ccceEEecCCCCCCeeEEEEc--CCCC
Q 009763 401 AVTAISFSE--NGYYLATAAHDG-VKLWDLRK-------L-------------KNFRSFESSDSETPTNSVDFD--HSGS 455 (526)
Q Consensus 401 ~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~-------~-------------~~~~~~~~~~~~~~i~~i~~s--~~~~ 455 (526)
.|+.+.... +...|+.+.+|| |.+|.... . ++...+.. ....+.++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v---~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV---GASAWGLDIHDYKKSR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec---CCceeEEEEEecCcce
Confidence 355554433 456788888888 99996521 0 01111221 4578889998 7778
Q ss_pred EEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCC-----C-EEEEEeCCCcEEEeeC
Q 009763 456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA-----K-YIAVGSMDRNLRVFGL 517 (526)
Q Consensus 456 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~-~l~s~~~dg~v~iw~l 517 (526)
+||++++. |.||-+........... .+.+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVP---SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEecccccccccc---ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888777 88888755322222211 22245678899996633 2 7888999999999888
No 480
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.51 E-value=0.009 Score=55.20 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=40.4
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM 47 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (526)
|.|.+++-.+-++---+-|=|+|||.||.+||.++-.||.|+-.+..
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 57999999988886555799999999999999999999999965553
No 481
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.45 E-value=2.2 Score=45.16 Aligned_cols=148 Identities=8% Similarity=0.059 Sum_probs=90.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEE------EEec----------------ccccceeEEEEec--CCCEEEEEeCCCcEE
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIV------TTLS----------------GHSKKVTSVKFVT--EGDLFLTGSADKTVR 290 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~------~~~~----------------~h~~~V~~l~~~~--~~~~l~s~s~dg~i~ 290 (526)
.++++++. .+.|.||+....... ..+. .....|+.+.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 779999986542211 1110 0112355554433 456799999999999
Q ss_pred EEeCCC-------C----------CceeeeEecccCccceEEEEEe--cCCCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 009763 291 VWQGSE-------D----------GNYDCKHTLKDHTAEVQAVTVH--ATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351 (526)
Q Consensus 291 iwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~~--p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (526)
+|.++. . ...++...+. ....+++++++ ...++||+++....|.||-............
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~- 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP- 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc-
Confidence 996421 0 0011222222 34579999998 7788888888888888876544211111100
Q ss_pred CCCCCCCCeeEEEEccCC---c---EEEEEeCCCcEEEEEC
Q 009763 352 GTDGRPEGYTSAAFHPDG---L---ILGTGTSEALVKIWDV 386 (526)
Q Consensus 352 ~~~~~~~~v~~~~~~~~~---~---~l~~g~~dg~i~iwd~ 386 (526)
...+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 206 -s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 -SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11244578899998733 2 7888889999999887
No 482
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.27 E-value=4.7 Score=37.72 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=125.4
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCC-------CCcEEEEecc-----cccceeEEEEecCCC------------EEE
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRP-------SGQIVTTLSG-----HSKKVTSVKFVTEGD------------LFL 281 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~-------~~~~~~~~~~-----h~~~V~~l~~~~~~~------------~l~ 281 (526)
-+.|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4689999999888888888999999986 1123334432 234577787764322 367
Q ss_pred EEeCCCcEEEEeCCCCCce--eeeEecc-cCccce-EEEEEec--CCCEEEEEE-CCCeEEEEeCCCCeEEE--EeecCC
Q 009763 282 TGSADKTVRVWQGSEDGNY--DCKHTLK-DHTAEV-QAVTVHA--TNKYFVTAS-LDNTWCFYDLSSGICLT--QVSDAG 352 (526)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~--~~~~~~~-~h~~~v-~~l~~~p--~~~~l~s~s-~dg~i~iwd~~~~~~~~--~~~~~~ 352 (526)
.+++||+|.-|...-+... .....+. .....| ..+++.. .+++|..+. ..++|-+||-.=..... .+....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 7899999999985432110 0111221 112333 3455543 355665554 57889999854322110 011110
Q ss_pred CCCCCCC-----------eeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec--CCCCCeEEEEECC------CCCE
Q 009763 353 TDGRPEG-----------YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSE------NGYY 413 (526)
Q Consensus 353 ~~~~~~~-----------v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~------~~~~ 413 (526)
......+ |+-..-.+++..=+.|..-|.|-+||+ .+..++++. +.-...+.|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0010011 111111222222223344578999997 467777773 2334556777766 4667
Q ss_pred EEEEeCCc-EEEEEcCCCccceEEecCCC----CCCeeEEEEcC
Q 009763 414 LATAAHDG-VKLWDLRKLKNFRSFESSDS----ETPTNSVDFDH 452 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----~~~i~~i~~s~ 452 (526)
|+.--.|| |..||..+++.+-.+..... ....+.+.|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77666677 99999998887666654321 12345666643
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=2 Score=42.10 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=84.2
Q ss_pred EEEEccCCcEEEEEeCCCcEEEEECCCCc--eeeEe-cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccc--eE
Q 009763 362 SAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKF-DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF--RS 435 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~--~~ 435 (526)
.+-|...++.+++ ...|.+.-|-++... ....+ ....++|.++.|++|.+.|++-..+. |.+++....+.. ..
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3444433333333 334555556554321 11222 23567999999999999999998887 999987433221 11
Q ss_pred EecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEE
Q 009763 436 FESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV 505 (526)
Q Consensus 436 ~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 505 (526)
.........|....|+.+....+.....+.+|.........+.+.+. ...|.-..|.++.+.+.-
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~-----~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSH-----NLNVNWYMYCPETAVILL 170 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhc-----ccCccEEEEccccceEee
Confidence 12222244588999998866666666669999886655554444442 556777888887765433
No 484
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=94.20 E-value=0.062 Score=41.13 Aligned_cols=53 Identities=32% Similarity=0.518 Sum_probs=35.2
Q ss_pred CcccccCCCCCCceEeCCCC-----eeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSG-----LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+-++|++-|.-..|+ ..|++..+.+.+.+++.-|.|.||++.+-+|.-
T Consensus 41 L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~k 98 (113)
T PF06416_consen 41 LTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVSK 98 (113)
T ss_dssp H-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-T
T ss_pred cCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEech
Confidence 35999999999998764444 479999999999999999999999999888754
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.19 E-value=1.8 Score=39.61 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=80.4
Q ss_pred EEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC-C--CcEEEEeCCC---CCceeeeEecccCccceEEEEEec
Q 009763 247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-D--KTVRVWQGSE---DGNYDCKHTLKDHTAEVQAVTVHA 320 (526)
Q Consensus 247 v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d--g~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~~p 320 (526)
-.+||+.+++....-.....-..+-.+.+||++|.+|+. + ..+++++... ...+......-.....--.....|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888876553321112222233356789999999875 2 3578887544 111111111011222333445567
Q ss_pred CCCEEEEEECCC-eEEEEeCCCC-eEEEEe--ecC-CCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 009763 321 TNKYFVTASLDN-TWCFYDLSSG-ICLTQV--SDA-GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 395 (526)
Q Consensus 321 ~~~~l~s~s~dg-~i~iwd~~~~-~~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 395 (526)
||+.|+.|+.+. +..+|.-... .....+ ... .......-...+...|+|++|+.+..++ .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999888764 3455554221 111111 100 0011123345677889999999987654 56788888776666
Q ss_pred cC
Q 009763 396 DG 397 (526)
Q Consensus 396 ~~ 397 (526)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
No 486
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.19 E-value=6.7 Score=39.16 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=86.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-----EEEEecccccceeEEEEec-----CCCEEEEEeCCCcEEEEeCCCCC-----
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHSKKVTSVKFVT-----EGDLFLTGSADKTVRVWQGSEDG----- 298 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~~~----- 298 (526)
+.+.|++|+..|.++||+...+. .+...+ -..+|..+..-. +...|++ -.-..+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34699999999999999975432 222222 346788776532 2234444 445778888763211
Q ss_pred -ceeeeEecccCc--cceEEEEEec----C-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc
Q 009763 299 -NYDCKHTLKDHT--AEVQAVTVHA----T-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (526)
Q Consensus 299 -~~~~~~~~~~h~--~~v~~l~~~p----~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 370 (526)
..-.+..+..|. .....+++-| . ..++.+-+.||.+.+|+-+.......+... - -...+.+.+...
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~---l---lPgPl~Y~~~tD 187 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF---L---LPGPLCYCPRTD 187 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC---C---CCcCeEEeecCC
Confidence 111122222232 2233444433 2 357888899999999997765544443321 1 223467778777
Q ss_pred EEEEEeCCCcEEEEEC
Q 009763 371 ILGTGTSEALVKIWDV 386 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~ 386 (526)
.|++++.+..+..|..
T Consensus 188 sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 188 SFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEecCceeEEEecH
Confidence 8888888888888865
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=1.3 Score=49.18 Aligned_cols=144 Identities=16% Similarity=0.237 Sum_probs=87.1
Q ss_pred CCCcEEEEeCCCCcEEEEecccccceeEEEEe--------cCCCEEEEEeCCCcEEEEeCCCCC----c--eeeeEeccc
Q 009763 243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV--------TEGDLFLTGSADKTVRVWQGSEDG----N--YDCKHTLKD 308 (526)
Q Consensus 243 ~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~--------~~~~~l~s~s~dg~i~iwd~~~~~----~--~~~~~~~~~ 308 (526)
.|+.+.+|+.+++.....+.+-...|..+..- |.=++++..+.--.|.++-+.-.. . +.....+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 48899999999988888888877778777653 222333333333456665432211 0 111112222
Q ss_pred CccceEEEEEecCCCEEEEEECCCeEEE--EeCCCC---e-E-------------EEEeecCCCCCCCCCeeEEEEccCC
Q 009763 309 HTAEVQAVTVHATNKYFVTASLDNTWCF--YDLSSG---I-C-------------LTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 309 h~~~v~~l~~~p~~~~l~s~s~dg~i~i--wd~~~~---~-~-------------~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
....|+|+....+|+.|++| .||.++- |....+ + + +..+... ...+..+|..+.+....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~-~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV-PGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC-CCCCCCcceeeEecccc
Confidence 35578899977778777665 5553322 222221 0 0 0000000 12455789999999999
Q ss_pred cEEEEEeCCCcEEEEECCC
Q 009763 370 LILGTGTSEALVKIWDVKS 388 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~ 388 (526)
+++++-+..|.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 9999999999999999976
No 488
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.90 E-value=12 Score=40.85 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC---CCCeeEEEEcc----------------CCcEEEEEeCCCcEE
Q 009763 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR---PEGYTSAAFHP----------------DGLILGTGTSEALVK 382 (526)
Q Consensus 322 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~----------------~~~~l~~g~~dg~i~ 382 (526)
+..++.++.++.|.-.|..+|+.+-.+........ ......+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777888899999999988877754321110 00012222221 334788888999999
Q ss_pred EEECCCCceeeEecCCCCCeE-------------EEEECC--CCCEEEEEeC----------Cc-EEEEEcCCCccceEE
Q 009763 383 IWDVKSQANVAKFDGHVGAVT-------------AISFSE--NGYYLATAAH----------DG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~i~-------------~l~~s~--~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~ 436 (526)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. ++ |+-||.++++..-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 11110 111122 1334555532 35 999999999987766
Q ss_pred ec
Q 009763 437 ES 438 (526)
Q Consensus 437 ~~ 438 (526)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 53
No 489
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.84 E-value=2.2 Score=45.82 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCcEEEEEcC
Q 009763 400 GAVTAISFSENGYYLATAAHDGVKLWDLR 428 (526)
Q Consensus 400 ~~i~~l~~s~~~~~l~~~~~d~i~iwd~~ 428 (526)
-.|..+.++|+|.+|+..+..+|.|-.+.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 36889999999999999999887777764
No 490
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=10 Score=39.84 Aligned_cols=174 Identities=11% Similarity=0.146 Sum_probs=84.8
Q ss_pred CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
-.|+||+..+ ..+..+.-..+.+..+.|+. ...|++...+|++.+|++-.... .... .+.......|..+.+.
T Consensus 64 ~~I~If~~sG----~lL~~~~w~~~~lI~mgWs~-~eeLI~v~k~g~v~Vy~~~ge~i-e~~s-vg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNISG----QLLGRILWKHGELIGMGWSD-DEELICVQKDGTVHVYGLLGEFI-ESNS-VGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEeccc----cchHHHHhcCCCeeeecccC-CceEEEEeccceEEEeecchhhh-cccc-cccccccCceeEEEEe
Confidence 4688888765 33333332334788999984 55677788999999999854322 2111 1111222334444444
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCceeeEecC---CCCCeEEEEECCCCC---EEEEEe-CCcEEEEEcCCCcc-ceEEec
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGY---YLATAA-HDGVKLWDLRKLKN-FRSFES 438 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~---~l~~~~-~d~i~iwd~~~~~~-~~~~~~ 438 (526)
.+|-.+. ..+|.+.+-.-.......++.. ...+-+|-...++++ .++--. ..+..++-...... ...+..
T Consensus 137 ~~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 137 HNGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred cCceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 4554333 3456555443222212222221 111112222222221 111111 11122222221111 111111
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEec
Q 009763 439 SDSETPTNSVDFDHSGSYLAVASADIRVYQVAS 471 (526)
Q Consensus 439 ~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~ 471 (526)
. ...+..+..||+.++|+.-...+++|....
T Consensus 215 ~--~~~~~ki~VS~n~~~laLyt~~G~i~~vs~ 245 (829)
T KOG2280|consen 215 P--NSSVVKISVSPNRRFLALYTETGKIWVVSI 245 (829)
T ss_pred C--CceEEEEEEcCCcceEEEEecCCcEEEEec
Confidence 1 356888999999999999888877776643
No 491
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.74 E-value=6.6 Score=38.10 Aligned_cols=152 Identities=16% Similarity=0.265 Sum_probs=89.2
Q ss_pred ccceeEEEEecCCCEEEEEeCCCc------EEEEeCCCC----Cceee--eEecccCcc--------ceEEEEEecCCCE
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKT------VRVWQGSED----GNYDC--KHTLKDHTA--------EVQAVTVHATNKY 324 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~------i~iwd~~~~----~~~~~--~~~~~~h~~--------~v~~l~~~p~~~~ 324 (526)
-+.+..|.+.+++..+++.+.+|. +..+++... ..... ...+..-.+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355778888866666777777777 555554431 11111 111111111 3347888778888
Q ss_pred EEEEECC------CeEEEEeCCCCeEEEEeecC----------CCCCCCCCeeEEEEccCCcEEEEEeCC-----C--c-
Q 009763 325 FVTASLD------NTWCFYDLSSGICLTQVSDA----------GTDGRPEGYTSAAFHPDGLILGTGTSE-----A--L- 380 (526)
Q Consensus 325 l~s~s~d------g~i~iwd~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g--~- 380 (526)
+++.-.+ ..|..++.. |.....+... .....+..+.+++++|+|..|+++.+. + .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 789999977 6655554211 112345678999999999966665432 2 1
Q ss_pred ------EEE--EECCC-Cceee----EecC-----CCCCeEEEEECCCCCEEEEE
Q 009763 381 ------VKI--WDVKS-QANVA----KFDG-----HVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 381 ------i~i--wd~~~-~~~~~----~~~~-----~~~~i~~l~~s~~~~~l~~~ 417 (526)
+++ ||..+ +.... .+.. ....|..+.+.+++++|+.=
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 444 45444 22222 2222 34578888888888877653
No 492
>PLN02153 epithiospecifier protein
Probab=93.70 E-value=7.5 Score=37.99 Aligned_cols=186 Identities=9% Similarity=0.038 Sum_probs=85.3
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC-----------CcEEEE
Q 009763 321 TNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----------ALVKIW 384 (526)
Q Consensus 321 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----------g~i~iw 384 (526)
++.+++.|+.+ ..+.+||+.+.+....-...............+..-++++++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45666677653 35788998877654321110000000111222223356777777754 247788
Q ss_pred ECCCCceeeEecC------CCCCeEEEEECCCCCEEEEEeC--------------CcEEEEEcCCCccceEEecC--CCC
Q 009763 385 DVKSQANVAKFDG------HVGAVTAISFSENGYYLATAAH--------------DGVKLWDLRKLKNFRSFESS--DSE 442 (526)
Q Consensus 385 d~~~~~~~~~~~~------~~~~i~~l~~s~~~~~l~~~~~--------------d~i~iwd~~~~~~~~~~~~~--~~~ 442 (526)
|..+.+-.. +.. .........+ ++++++.++. +.+.+||+.+.+-...-... ...
T Consensus 165 d~~~~~W~~-l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 165 NIADGKWVQ-LPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred ECCCCeEee-CCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 987654321 111 1111122223 5555554431 22888998765433211100 001
Q ss_pred CCeeEEEEcCCCCEEEEEeCC--------------eEEEEEecccCcceeeeeecCCC-CC--cceEEEEEcCCCCEEEE
Q 009763 443 TPTNSVDFDHSGSYLAVASAD--------------IRVYQVASVKADWNCIKTFPDLS-GT--GKATCVKFGPDAKYIAV 505 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~d--------------i~v~~~~~~~~~~~~~~~~~~~~-~~--~~v~~~~~s~~~~~l~s 505 (526)
....++ ...++++++.|+.. ..+|.++.....|..+....... .. ....++.+..++++++.
T Consensus 242 r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~ 320 (341)
T PLN02153 242 RSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMH 320 (341)
T ss_pred cceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEE
Confidence 111122 22346677777641 14666666667777654321100 01 11223444445567777
Q ss_pred EeCCC
Q 009763 506 GSMDR 510 (526)
Q Consensus 506 ~~~dg 510 (526)
|+.++
T Consensus 321 gG~~~ 325 (341)
T PLN02153 321 GGKLP 325 (341)
T ss_pred cCcCC
Confidence 77643
No 493
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.69 E-value=4.4 Score=35.94 Aligned_cols=167 Identities=15% Similarity=0.112 Sum_probs=87.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC------eEEEE-eCCCCeEEEEeec
Q 009763 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN------TWCFY-DLSSGICLTQVSD 350 (526)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg------~i~iw-d~~~~~~~~~~~~ 350 (526)
+.|+.+...+.|.+|++.. ........|.. -+.|..+.++..|+|+++--.+. .+++| |.+...
T Consensus 29 d~Lfva~~g~~Vev~~l~~-~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~------- 99 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQ-EECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK------- 99 (215)
T ss_pred ceEEEEcCCCEEEEEEccc-CCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc-------
Confidence 4555546667899999984 22355555553 37899999999999999975432 33332 111110
Q ss_pred CCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCC
Q 009763 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKL 430 (526)
Q Consensus 351 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~ 430 (526)
....++.. ..- |. -+.++..+.. ...-.+..+. -..++.+++-.|...-|++|+.+.+.+|.+...
T Consensus 100 ----~~~~~v~v-Ria--G~-~v~~~~~~~~-----~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 100 ----EENSPVRV-RIA--GH-RVTPSFNESS-----KDQLEIIELP-LSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred ----ccCCcEEE-EEc--cc-ccccCCCCcc-----ccceEEEEec-CCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 00111211 000 00 0011111100 1111122333 245778888888666677778888889987643
Q ss_pred cc-c---eEEec------CCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 431 KN-F---RSFES------SDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 431 ~~-~---~~~~~------~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
.. . ..+.. +.....+..++| .+.|+|..+.. ++|+.+
T Consensus 166 ~~~~~~~~~lDFe~~l~~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 166 TIQSEKFSFLDFERSLIDHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred EEecccccEEechhhhhheecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 32 1 11111 111223444444 36788888777 777765
No 494
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.62 E-value=0.037 Score=50.00 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=39.4
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGE 43 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~ 43 (526)
+-|++|+.+-+.|+=+|-||+.|++.||+.-|-+.. +||.|.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 359999999999999999999999999999888885 7999875
No 495
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.58 E-value=3.4 Score=33.61 Aligned_cols=115 Identities=10% Similarity=0.105 Sum_probs=71.0
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCC--------cEEEEecccccceeEEEEec-----CCCEEEEEeCCCcEEEEeC
Q 009763 228 SLDIHYSKDVIATGGVDTNAVLFDRPSG--------QIVTTLSGHSKKVTSVKFVT-----EGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~~dg~v~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~dg~i~iwd~ 294 (526)
.-.|......|++++.-|.|.|++.... ..+..+. -...|++|+-.+ +.+.|+.|+. .++..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3456666678888889999999986533 2334443 345677776543 3456777765 57999999
Q ss_pred CCCCceeeeEecccCccceEEEEEec---CCCEEEEEECCCeEEEEeCCCCeEEEEe
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHA---TNKYFVTASLDNTWCFYDLSSGICLTQV 348 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 348 (526)
..... .-++.-.+.|+++.+-. ...-++..+.+..|.-||.+..+...++
T Consensus 81 ~~N~d----~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSD----LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCch----hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 87521 12234456788887732 1233445555667777776665554443
No 496
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=93.53 E-value=11 Score=39.24 Aligned_cols=219 Identities=11% Similarity=0.120 Sum_probs=97.2
Q ss_pred CeEEEEecCCC-CEEEEEeCCCc--EEEEeCCCCcEEEEecccccceeEEEEecC----CC------EEEEEe---CCCc
Q 009763 225 GIVSLDIHYSK-DVIATGGVDTN--AVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GD------LFLTGS---ADKT 288 (526)
Q Consensus 225 ~I~~~~~s~~~-~~l~t~~~dg~--v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~----~~------~l~s~s---~dg~ 288 (526)
..+++.+..+| .+|+.|+.-|. +.-|....-+.+..+. .-++|.+++..+. .. .|++++ .+|.
T Consensus 257 ~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gs 335 (504)
T PF10433_consen 257 IASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGS 335 (504)
T ss_dssp -ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-E
T ss_pred hhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCc
Confidence 34455555444 37777776444 4444544445555555 4577888888531 11 455554 4788
Q ss_pred EEEEeCCCCCcee-eeEecccC--ccceEEEEEec-CCCEEEEEECCCeEEEEeCC---CCeEEEEeecCCCCCCCCCee
Q 009763 289 VRVWQGSEDGNYD-CKHTLKDH--TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLS---SGICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 289 i~iwd~~~~~~~~-~~~~~~~h--~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~v~ 361 (526)
+++..-.-+ .. ........ -..++.+.... ++.+++.+..+.+ .++.+. ....+..+...+.......+.
T Consensus 336 L~~lr~Gi~--~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~ 412 (504)
T PF10433_consen 336 LRILRNGIG--IEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLA 412 (504)
T ss_dssp EEEEEESBE--EE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEE
T ss_pred EEEEeccCC--ceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeE
Confidence 888853211 11 01111111 23444444332 2457777666544 444443 333333332111211112232
Q ss_pred EEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC-CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecC
Q 009763 362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 439 (526)
+..+. +..++=.+. ..|++.+...++....+.. ....|.+.+.+ +.+++.+..++ +.++.+............
T Consensus 413 ~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 487 (504)
T PF10433_consen 413 AGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDE 487 (504)
T ss_dssp EEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE--
T ss_pred EEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeecc
Confidence 22232 334444443 4488888877777666533 33456666664 34444444444 888888765553332211
Q ss_pred C---CCCCeeEEEEcC
Q 009763 440 D---SETPTNSVDFDH 452 (526)
Q Consensus 440 ~---~~~~i~~i~~s~ 452 (526)
. ....+.++...|
T Consensus 488 ~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 488 TILELDNEISCLSIEP 503 (504)
T ss_dssp --EE-SS-EEEEE---
T ss_pred ccccCCCceEEEEeCC
Confidence 0 246777777665
No 497
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=2.7 Score=41.30 Aligned_cols=144 Identities=9% Similarity=0.045 Sum_probs=84.5
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 009763 271 VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350 (526)
Q Consensus 271 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (526)
+-|. |.+..+.+...|.+.-|-+...+.-.++..-....++|.++.|++|++.+++--.+.+|.+++....+.......
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 3343 333333334445566666544332122222224557999999999999999999999999999844433222211
Q ss_pred CCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECCCCCEEEEEe
Q 009763 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 351 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
. .......|...+|..+.. +|.-...| +-+|-.... ..++..+.+.-.|+-..|.++.+.+..++
T Consensus 107 ~-ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 107 E-CKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred H-hccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 1 112234588888987643 44444333 566655433 23444456777888888888876555444
No 498
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.47 E-value=2.4 Score=34.45 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=64.4
Q ss_pred EEccCCcEEEEEeCCCcEEEEECCCCc--------eeeEecCCCCCeEEEEECC-----CCCEEEEEeCCcEEEEEcCCC
Q 009763 364 AFHPDGLILGTGTSEALVKIWDVKSQA--------NVAKFDGHVGAVTAISFSE-----NGYYLATAAHDGVKLWDLRKL 430 (526)
Q Consensus 364 ~~~~~~~~l~~g~~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~l~~s~-----~~~~l~~~~~d~i~iwd~~~~ 430 (526)
.|.....-|++++.-|.|.|++..... .+..+. -...|++++-.+ +...|+.|+...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 444444568888888999999876432 333343 345677775433 356888999888999999887
Q ss_pred ccceEEecCCCCCCeeEEEEcC----CCCEEEEEeCC-eEEEEE
Q 009763 431 KNFRSFESSDSETPTNSVDFDH----SGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 431 ~~~~~~~~~~~~~~i~~i~~s~----~~~~l~~~~~d-i~v~~~ 469 (526)
..+..... ...++++.+-. ...++++|+.- +.-|+.
T Consensus 84 ~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 84 SDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred chhhhhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 66554444 34566666632 34556666554 555553
No 499
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.25 E-value=0.39 Score=46.78 Aligned_cols=167 Identities=12% Similarity=0.103 Sum_probs=96.6
Q ss_pred ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCcc----ceE-EEEEecCCCEEEEEECCCeEE
Q 009763 261 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA----EVQ-AVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 261 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~-~l~~~p~~~~l~s~s~dg~i~ 335 (526)
+......|..+-..|||+.|..-+. ..+.|+++.... ++..+......+ .|+ .+.....|..+++++.||-|.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~-l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS-LQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccc-cchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 4444566778888999998877665 678899886532 111111111111 122 122223466788889999988
Q ss_pred EE-eCCCCeE--EEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCC
Q 009763 336 FY-DLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 412 (526)
Q Consensus 336 iw-d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (526)
-| |.+.+.. ...+.... -...++..+.-..+.+-+++-+.+|++.++.....+.+. ++.--..+.-+++||++.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~--l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFK--LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeecCCCCcceeeeccc--cCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccc
Confidence 77 5443321 11111100 111233333333345667777788888887654443332 222223567789999999
Q ss_pred EEEEEeCCcEEEEEcCCCcc
Q 009763 413 YLATAAHDGVKLWDLRKLKN 432 (526)
Q Consensus 413 ~l~~~~~d~i~iwd~~~~~~ 432 (526)
+|++-..++++++.+.+..+
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 99988777799998876544
No 500
>PLN02153 epithiospecifier protein
Probab=93.18 E-value=9.1 Score=37.39 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=73.1
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCcEEEEeccc--cc-----ceeEEEEecCCCEEEEEeCC-----CcEEEEeC
Q 009763 234 SKDVIATGGVD-------TNAVLFDRPSGQIVTTLSGH--SK-----KVTSVKFVTEGDLFLTGSAD-----KTVRVWQG 294 (526)
Q Consensus 234 ~~~~l~t~~~d-------g~v~vwd~~~~~~~~~~~~h--~~-----~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~ 294 (526)
++.+++.|+.+ ..+.+||..+.+-. .+... .. ....+.+ ++.+++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 46677777753 35778887765322 12111 00 1112222 56677777753 35778887
Q ss_pred CCCCceeeeEeccc---Cccc-eEEEEEecCCCEEEEEECC-----------CeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 009763 295 SEDGNYDCKHTLKD---HTAE-VQAVTVHATNKYFVTASLD-----------NTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 295 ~~~~~~~~~~~~~~---h~~~-v~~l~~~p~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (526)
.+ ..+..+..+.. .... -.+++. -+++.++.|+.+ ..+.+||..+......-. .........
T Consensus 109 ~t-~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~-~~~~~~~r~ 185 (341)
T PLN02153 109 VK-NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD-PGENFEKRG 185 (341)
T ss_pred CC-CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC-CCCCCCCCC
Confidence 66 33333332210 0111 112222 256666777653 247788988876543221 100000111
Q ss_pred eeEEEEccCCcEEEEEeCC-------------CcEEEEECCCCce
Q 009763 360 YTSAAFHPDGLILGTGTSE-------------ALVKIWDVKSQAN 391 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~d-------------g~i~iwd~~~~~~ 391 (526)
-.+++. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 112222 356666665432 4588899877643
Done!