Query 009763
Match_columns 526
No_of_seqs 1030 out of 2725
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 3.9E-49 1.3E-53 386.7 41.9 286 219-516 51-340 (340)
2 1vyh_C Platelet-activating fac 100.0 8.1E-49 2.8E-53 394.3 40.8 284 219-518 104-410 (410)
3 3ow8_A WD repeat-containing pr 100.0 1.8E-44 6.1E-49 350.3 41.9 284 219-518 28-320 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 8.7E-44 3E-48 350.4 43.8 288 218-516 59-354 (354)
5 3frx_A Guanine nucleotide-bind 100.0 4.3E-43 1.5E-47 340.4 42.5 286 219-520 13-318 (319)
6 3iz6_a 40S ribosomal protein R 100.0 4.7E-44 1.6E-48 356.0 34.0 300 218-521 61-377 (380)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-42 3.5E-47 341.7 39.6 298 220-523 12-339 (345)
8 2ynn_A Coatomer subunit beta'; 100.0 4.1E-42 1.4E-46 331.2 40.7 285 219-520 9-303 (304)
9 4ery_A WD repeat-containing pr 100.0 2.3E-41 8E-46 327.1 43.7 286 219-518 19-311 (312)
10 2xzm_R RACK1; ribosome, transl 100.0 7.1E-42 2.4E-46 335.5 40.5 291 218-520 16-341 (343)
11 4gqb_B Methylosome protein 50; 100.0 9.7E-42 3.3E-46 333.8 37.8 288 220-523 27-335 (344)
12 1erj_A Transcriptional repress 100.0 4.6E-41 1.6E-45 336.0 40.8 282 221-520 62-390 (393)
13 4g56_B MGC81050 protein; prote 100.0 3.6E-41 1.2E-45 332.0 36.3 287 220-521 39-345 (357)
14 2hes_X YDR267CP; beta-propelle 100.0 2.5E-40 8.6E-45 322.6 41.9 288 219-519 10-328 (330)
15 1nr0_A Actin interacting prote 100.0 1.9E-40 6.5E-45 350.6 43.9 296 219-521 143-569 (611)
16 4aow_A Guanine nucleotide-bind 100.0 1.5E-39 5.3E-44 317.7 43.8 289 219-521 34-339 (340)
17 3dm0_A Maltose-binding peripla 100.0 1E-39 3.4E-44 350.6 42.4 289 218-518 377-692 (694)
18 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-39 6.4E-44 321.2 38.5 297 218-519 3-361 (372)
19 1nr0_A Actin interacting prote 100.0 1.8E-39 6.1E-44 343.2 38.9 292 219-521 14-357 (611)
20 3zwl_B Eukaryotic translation 100.0 9.7E-39 3.3E-43 315.2 41.1 289 219-520 28-347 (369)
21 1r5m_A SIR4-interacting protei 100.0 5.9E-39 2E-43 323.1 40.2 293 220-519 42-425 (425)
22 3k26_A Polycomb protein EED; W 100.0 1.5E-39 5.1E-44 320.8 34.2 294 216-518 11-365 (366)
23 2ymu_A WD-40 repeat protein; u 100.0 2.3E-38 7.9E-43 332.6 42.7 276 219-516 299-577 (577)
24 1sq9_A Antiviral protein SKI8; 100.0 4.5E-39 1.5E-43 321.6 35.4 297 217-520 10-396 (397)
25 3ei3_B DNA damage-binding prot 100.0 1.5E-38 5.1E-43 316.6 38.6 287 218-519 68-382 (383)
26 2ynn_A Coatomer subunit beta'; 100.0 4.2E-38 1.4E-42 303.2 38.9 251 256-521 4-261 (304)
27 3dwl_C Actin-related protein 2 100.0 3E-40 1E-44 328.0 22.9 291 218-517 6-377 (377)
28 1gxr_A ESG1, transducin-like e 100.0 9E-38 3.1E-42 304.4 39.4 280 220-517 48-335 (337)
29 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-37 6.1E-42 299.2 40.2 283 217-522 12-299 (313)
30 3i2n_A WD repeat-containing pr 100.0 3.1E-38 1.1E-42 310.5 34.8 299 217-521 12-355 (357)
31 3ow8_A WD repeat-containing pr 100.0 8.9E-38 3E-42 303.1 36.7 241 219-469 76-319 (321)
32 2ymu_A WD-40 repeat protein; u 100.0 4.5E-37 1.5E-41 322.8 44.3 279 219-519 258-539 (577)
33 1vyh_C Platelet-activating fac 100.0 8.2E-38 2.8E-42 314.1 34.9 241 219-469 146-409 (410)
34 2pm9_A Protein WEB1, protein t 100.0 1E-38 3.5E-43 321.0 28.3 298 221-520 65-415 (416)
35 4e54_B DNA damage-binding prot 100.0 2.2E-38 7.6E-43 321.0 30.4 290 220-522 116-433 (435)
36 4gqb_B Methylosome protein 50; 100.0 1.8E-37 6E-42 303.5 33.8 239 222-470 81-330 (344)
37 1got_B GT-beta; complex (GTP-b 100.0 2.6E-36 9.1E-41 295.4 40.5 251 256-521 46-303 (340)
38 4aez_A CDC20, WD repeat-contai 100.0 7.4E-37 2.5E-41 306.4 36.7 279 225-522 95-383 (401)
39 1gxr_A ESG1, transducin-like e 100.0 1E-36 3.5E-41 297.0 36.4 284 222-521 8-298 (337)
40 3gre_A Serine/threonine-protei 100.0 1.5E-37 5E-42 315.1 28.9 291 217-516 57-437 (437)
41 3vl1_A 26S proteasome regulato 100.0 1.5E-35 5E-40 298.5 43.0 286 225-519 99-419 (420)
42 2pm7_B Protein transport prote 100.0 1.5E-36 5.3E-41 291.2 33.8 257 218-481 4-294 (297)
43 3vl1_A 26S proteasome regulato 100.0 1.5E-37 5E-42 313.2 27.8 284 224-522 57-368 (420)
44 3frx_A Guanine nucleotide-bind 100.0 5.3E-36 1.8E-40 290.5 37.3 242 219-470 61-316 (319)
45 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.3E-36 2.8E-40 292.5 37.8 261 255-521 5-285 (345)
46 2pm9_A Protein WEB1, protein t 100.0 2.9E-37 9.9E-42 310.4 28.1 288 224-522 13-340 (416)
47 3dw8_B Serine/threonine-protei 100.0 4.1E-36 1.4E-40 305.1 36.5 290 221-518 26-445 (447)
48 4gga_A P55CDC, cell division c 100.0 1.8E-35 6.1E-40 298.3 40.7 276 225-521 107-397 (420)
49 4ery_A WD repeat-containing pr 100.0 3E-35 1E-39 284.2 39.5 254 255-521 13-270 (312)
50 4a11_B DNA excision repair pro 100.0 1.9E-35 6.6E-40 295.9 39.1 291 217-522 37-368 (408)
51 3f3f_A Nucleoporin SEH1; struc 100.0 8.5E-36 2.9E-40 291.2 35.4 297 217-521 5-339 (351)
52 3v7d_B Cell division control p 100.0 3.3E-35 1.1E-39 300.2 40.6 284 219-522 117-424 (464)
53 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-35 4.6E-40 324.4 39.4 287 219-521 9-304 (814)
54 2pbi_B Guanine nucleotide-bind 100.0 2.9E-35 9.9E-40 289.6 37.4 252 256-521 55-317 (354)
55 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-35 8.4E-40 298.7 37.0 282 218-522 128-417 (435)
56 1yfq_A Cell cycle arrest prote 100.0 1.2E-35 4.2E-40 290.3 33.5 280 218-517 6-322 (342)
57 4ggc_A P55CDC, cell division c 100.0 1.4E-34 4.7E-39 279.7 40.3 277 226-522 28-318 (318)
58 2pm7_B Protein transport prote 100.0 3.8E-35 1.3E-39 281.5 36.0 252 259-519 3-285 (297)
59 4g56_B MGC81050 protein; prote 100.0 5.3E-36 1.8E-40 295.1 30.5 242 220-471 91-343 (357)
60 4h5i_A Guanine nucleotide-exch 100.0 1.3E-35 4.5E-40 293.1 32.0 284 224-522 15-346 (365)
61 2xzm_R RACK1; ribosome, transl 100.0 1.5E-34 5E-39 283.4 38.1 245 218-470 71-339 (343)
62 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-36 4.9E-41 312.2 24.7 288 220-520 204-518 (524)
63 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-35 2.1E-39 333.6 40.4 286 219-519 611-913 (1249)
64 2hes_X YDR267CP; beta-propelle 100.0 7E-35 2.4E-39 284.0 34.5 242 221-469 56-326 (330)
65 3bg1_A Protein SEC13 homolog; 100.0 1.3E-35 4.5E-40 287.3 29.0 260 218-483 8-304 (316)
66 1erj_A Transcriptional repress 100.0 2.3E-34 7.9E-39 287.4 38.1 242 223-470 123-388 (393)
67 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-33 3.6E-38 287.5 42.0 275 219-521 114-393 (445)
68 1pgu_A Actin interacting prote 100.0 4E-34 1.4E-38 302.3 40.4 291 218-519 155-614 (615)
69 3iz6_a 40S ribosomal protein R 100.0 1.4E-35 4.8E-40 294.9 27.4 264 249-521 50-331 (380)
70 3sfz_A APAF-1, apoptotic pepti 100.0 3.4E-34 1.2E-38 327.4 40.4 293 220-521 654-1036(1249)
71 2aq5_A Coronin-1A; WD40 repeat 100.0 4.6E-35 1.6E-39 293.5 29.2 287 226-520 37-343 (402)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-33 6.5E-38 285.6 41.2 278 219-520 155-443 (445)
73 3mmy_A MRNA export factor; mRN 100.0 5.9E-34 2E-38 280.8 34.5 286 217-520 33-347 (368)
74 3v7d_B Cell division control p 100.0 3.6E-33 1.2E-37 285.1 41.0 280 219-517 158-461 (464)
75 3bg1_A Protein SEC13 homolog; 100.0 5.7E-35 2E-39 282.8 25.6 250 260-519 8-293 (316)
76 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-33 3.9E-38 309.9 38.9 208 219-434 13-247 (902)
77 1pgu_A Actin interacting prote 100.0 1.3E-33 4.5E-38 298.4 37.1 287 219-519 14-328 (615)
78 3jrp_A Fusion protein of prote 100.0 5.5E-34 1.9E-38 282.3 32.1 250 218-471 6-287 (379)
79 3mkq_A Coatomer beta'-subunit; 100.0 3E-33 1E-37 305.8 40.3 292 219-519 51-386 (814)
80 2oaj_A Protein SNI1; WD40 repe 100.0 1E-33 3.4E-38 310.4 35.9 292 222-520 97-606 (902)
81 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-34 7.4E-39 282.2 27.0 271 230-519 43-333 (343)
82 3dm0_A Maltose-binding peripla 100.0 1.6E-33 5.4E-38 302.4 35.1 245 219-469 426-691 (694)
83 3jrp_A Fusion protein of prote 100.0 4.1E-33 1.4E-37 276.1 34.7 258 255-519 1-287 (379)
84 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.2E-33 1.8E-37 282.8 34.6 287 224-520 5-392 (450)
85 3gre_A Serine/threonine-protei 100.0 5.8E-34 2E-38 288.6 25.4 277 231-521 35-361 (437)
86 3k26_A Polycomb protein EED; W 100.0 1.9E-33 6.5E-38 277.1 27.0 244 221-469 67-364 (366)
87 4aez_A CDC20, WD repeat-contai 100.0 3.7E-32 1.3E-36 272.2 35.3 242 220-471 131-380 (401)
88 1k8k_C P40, ARP2/3 complex 41 100.0 4.6E-32 1.6E-36 268.0 33.0 246 261-519 4-274 (372)
89 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-33 7E-38 288.7 23.3 269 222-520 132-429 (524)
90 1sq9_A Antiviral protein SKI8; 100.0 3.8E-32 1.3E-36 271.4 30.8 248 220-470 59-394 (397)
91 3ei3_B DNA damage-binding prot 100.0 5.6E-32 1.9E-36 269.1 31.7 262 250-521 58-341 (383)
92 2xyi_A Probable histone-bindin 100.0 1E-31 3.5E-36 271.5 34.0 255 259-519 122-410 (430)
93 1r5m_A SIR4-interacting protei 100.0 1.3E-31 4.4E-36 269.4 34.6 241 222-469 107-423 (425)
94 3dwl_C Actin-related protein 2 100.0 5.1E-33 1.7E-37 275.9 22.2 246 261-518 7-280 (377)
95 3zwl_B Eukaryotic translation 100.0 6.8E-31 2.3E-35 258.9 37.0 247 257-521 24-306 (369)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 3.6E-32 1.2E-36 272.4 28.3 247 218-471 76-342 (402)
97 1yfq_A Cell cycle arrest prote 100.0 9.6E-32 3.3E-36 262.6 29.7 253 259-521 5-284 (342)
98 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-31 6.5E-36 262.4 31.9 281 220-521 16-338 (355)
99 4aow_A Guanine nucleotide-bind 100.0 1.8E-30 6E-35 253.3 38.2 246 219-472 82-338 (340)
100 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-32 8.2E-37 274.3 25.2 265 222-518 14-296 (588)
101 4e54_B DNA damage-binding prot 100.0 6.9E-32 2.4E-36 273.3 28.8 254 259-521 113-389 (435)
102 3dw8_B Serine/threonine-protei 100.0 1E-31 3.5E-36 272.6 30.1 254 264-521 27-375 (447)
103 3i2n_A WD repeat-containing pr 100.0 7.3E-32 2.5E-36 264.9 27.9 240 221-470 63-352 (357)
104 4gga_A P55CDC, cell division c 100.0 5.4E-31 1.9E-35 265.4 33.8 243 220-470 144-394 (420)
105 3jro_A Fusion protein of prote 100.0 3.3E-32 1.1E-36 294.1 26.3 249 218-470 4-284 (753)
106 2xyi_A Probable histone-bindin 100.0 2.1E-31 7.1E-36 269.3 29.8 247 220-471 125-410 (430)
107 3bws_A Protein LP49; two-domai 100.0 1.1E-30 3.8E-35 264.0 35.1 276 224-519 123-432 (433)
108 3jro_A Fusion protein of prote 100.0 2.3E-31 8E-36 287.4 30.2 256 258-520 2-286 (753)
109 3odt_A Protein DOA1; ubiquitin 100.0 4.6E-30 1.6E-34 247.2 34.0 243 255-521 8-257 (313)
110 1l0q_A Surface layer protein; 100.0 2.7E-29 9.4E-34 250.2 37.8 264 236-521 3-277 (391)
111 4h5i_A Guanine nucleotide-exch 100.0 1.7E-30 5.9E-35 256.5 26.2 242 219-471 69-343 (365)
112 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-29 4.4E-34 256.6 31.6 234 219-471 169-414 (435)
113 4a11_B DNA excision repair pro 100.0 3E-29 1E-33 250.8 33.7 285 220-519 96-405 (408)
114 4gq1_A NUP37; propeller, trans 100.0 2.3E-30 7.9E-35 258.3 25.0 243 222-469 88-387 (393)
115 3mmy_A MRNA export factor; mRN 100.0 3.3E-29 1.1E-33 246.7 33.0 262 249-521 23-306 (368)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.8E-29 9.5E-34 255.3 33.2 249 220-476 99-396 (450)
117 4ggc_A P55CDC, cell division c 100.0 5.5E-29 1.9E-33 240.3 31.4 242 220-469 64-313 (318)
118 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-30 6.6E-35 260.5 21.4 250 221-508 83-350 (588)
119 4gq1_A NUP37; propeller, trans 100.0 1.3E-29 4.6E-34 252.8 24.3 232 274-517 98-387 (393)
120 1l0q_A Surface layer protein; 100.0 1.2E-26 4.2E-31 231.0 38.8 279 224-521 32-344 (391)
121 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-28 7E-33 239.6 24.9 231 273-520 44-293 (343)
122 2w18_A PALB2, fancn, partner a 100.0 1.4E-27 4.8E-32 225.5 27.4 275 226-517 42-355 (356)
123 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-27 6.6E-32 231.8 28.9 216 219-437 53-345 (351)
124 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-27 8.7E-32 232.9 28.9 247 249-521 3-273 (355)
125 3bws_A Protein LP49; two-domai 100.0 3.2E-26 1.1E-30 231.2 35.0 279 223-521 60-392 (433)
126 2w18_A PALB2, fancn, partner a 100.0 3E-27 1E-31 223.3 25.0 201 222-427 110-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-25 6.7E-30 224.1 31.4 275 225-521 64-389 (415)
128 1nir_A Nitrite reductase; hemo 99.9 9.1E-25 3.1E-29 226.1 31.3 285 230-523 144-462 (543)
129 3u4y_A Uncharacterized protein 99.9 9.2E-24 3.2E-28 205.1 36.3 277 230-520 4-305 (331)
130 2ecf_A Dipeptidyl peptidase IV 99.9 2.2E-24 7.6E-29 233.1 31.9 286 223-519 36-413 (741)
131 1nir_A Nitrite reductase; hemo 99.9 7.6E-24 2.6E-28 219.2 34.0 283 226-521 181-516 (543)
132 1ri6_A Putative isomerase YBHE 99.9 1.7E-23 5.9E-28 203.8 33.9 271 237-518 7-307 (343)
133 3vgz_A Uncharacterized protein 99.9 5.8E-23 2E-27 201.1 37.4 267 224-510 41-335 (353)
134 1pby_B Quinohemoprotein amine 99.9 1.2E-23 4.2E-28 204.4 28.7 266 236-521 2-312 (337)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.4E-23 2.9E-27 204.9 33.1 246 235-501 143-410 (415)
136 1xfd_A DIP, dipeptidyl aminope 99.9 4.2E-24 1.4E-28 230.3 25.2 289 225-520 18-394 (723)
137 2oit_A Nucleoporin 214KDA; NH2 99.9 3.4E-23 1.2E-27 208.6 28.3 289 224-519 37-405 (434)
138 2z3z_A Dipeptidyl aminopeptida 99.9 5.4E-23 1.9E-27 221.0 31.3 280 224-521 82-437 (706)
139 2ojh_A Uncharacterized protein 99.9 3.7E-23 1.3E-27 196.7 25.4 253 240-510 17-293 (297)
140 1ri6_A Putative isomerase YBHE 99.9 2.8E-22 9.6E-27 195.2 30.4 270 222-501 36-335 (343)
141 3hfq_A Uncharacterized protein 99.9 2.8E-21 9.5E-26 189.1 35.5 270 244-518 15-316 (347)
142 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-22 5.3E-27 218.7 27.5 277 225-519 110-459 (741)
143 2ojh_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 191.9 24.0 233 221-463 39-292 (297)
144 1k32_A Tricorn protease; prote 99.9 6.6E-22 2.3E-26 221.4 30.9 277 223-521 295-639 (1045)
145 3scy_A Hypothetical bacterial 99.9 3.8E-20 1.3E-24 182.0 35.1 279 235-518 13-336 (361)
146 1k32_A Tricorn protease; prote 99.9 3E-21 1E-25 216.1 30.0 274 220-518 200-501 (1045)
147 3u4y_A Uncharacterized protein 99.9 1.7E-20 5.9E-25 181.9 30.6 240 223-469 40-302 (331)
148 3o4h_A Acylamino-acid-releasin 99.9 1.5E-21 5E-26 205.0 24.6 267 223-519 21-315 (582)
149 1jmx_B Amine dehydrogenase; ox 99.9 5.9E-21 2E-25 186.4 27.1 274 228-521 4-327 (349)
150 2z3z_A Dipeptidyl aminopeptida 99.9 3.7E-21 1.3E-25 206.7 27.9 280 226-521 28-393 (706)
151 3hfq_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 181.5 32.1 249 223-475 39-321 (347)
152 3vgz_A Uncharacterized protein 99.9 5.6E-20 1.9E-24 179.8 31.6 230 225-463 90-334 (353)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 8.4E-21 2.9E-25 191.1 23.6 262 245-518 23-332 (434)
154 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-20 3.7E-25 203.7 25.5 274 225-507 62-428 (723)
155 3scy_A Hypothetical bacterial 99.9 3.1E-19 1E-23 175.5 33.3 264 222-497 48-360 (361)
156 1z68_A Fibroblast activation p 99.9 7.6E-21 2.6E-25 204.7 23.0 278 228-519 20-391 (719)
157 1pby_B Quinohemoprotein amine 99.8 1.8E-19 6.3E-24 174.7 25.5 239 225-483 35-318 (337)
158 3pe7_A Oligogalacturonate lyas 99.8 1E-18 3.5E-23 173.4 27.6 276 229-519 41-382 (388)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.9E-18 6.4E-23 170.2 28.3 277 237-520 4-342 (365)
160 1z68_A Fibroblast activation p 99.8 1.9E-19 6.6E-24 193.8 23.0 286 225-521 61-445 (719)
161 2bay_A PRE-mRNA splicing facto 99.8 4.7E-21 1.6E-25 132.7 5.9 56 1-56 4-59 (61)
162 4a5s_A Dipeptidyl peptidase 4 99.8 4.1E-18 1.4E-22 183.7 28.6 240 225-471 18-351 (740)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.7E-17 5.7E-22 163.5 28.5 242 224-471 40-341 (365)
164 3o4h_A Acylamino-acid-releasin 99.8 1.5E-18 5.2E-23 182.0 20.7 230 265-517 21-274 (582)
165 3fvz_A Peptidyl-glycine alpha- 99.8 1.2E-16 4.1E-21 154.9 30.3 244 223-470 23-321 (329)
166 3c5m_A Oligogalacturonate lyas 99.8 3.2E-18 1.1E-22 170.1 19.4 278 225-518 37-381 (396)
167 1q7f_A NHL, brain tumor CG1071 99.8 4.2E-16 1.4E-20 147.7 33.1 242 263-521 27-282 (286)
168 1q7f_A NHL, brain tumor CG1071 99.8 6.3E-16 2.2E-20 146.5 33.5 238 221-469 27-278 (286)
169 1jmx_B Amine dehydrogenase; ox 99.8 5E-17 1.7E-21 158.4 26.0 238 225-483 44-333 (349)
170 2oiz_A Aromatic amine dehydrog 99.8 1.1E-16 3.9E-21 156.9 27.6 256 243-520 29-335 (361)
171 2dg1_A DRP35, lactonase; beta 99.8 2.7E-16 9.4E-21 152.5 29.2 281 224-519 6-316 (333)
172 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-16 1.2E-20 151.7 28.0 247 265-520 23-323 (329)
173 3azo_A Aminopeptidase; POP fam 99.8 2.1E-16 7.1E-21 168.4 28.8 287 220-520 20-370 (662)
174 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-16 4.8E-21 171.8 27.7 283 227-520 65-450 (740)
175 3pe7_A Oligogalacturonate lyas 99.8 9.9E-17 3.4E-21 159.0 23.2 264 248-521 13-331 (388)
176 2z2n_A Virginiamycin B lyase; 99.7 6.6E-14 2.3E-18 133.0 40.1 278 223-520 14-296 (299)
177 2oiz_A Aromatic amine dehydrog 99.7 2.9E-15 9.8E-20 146.9 30.8 258 228-501 54-360 (361)
178 2gop_A Trilobed protease; beta 99.7 2.3E-15 7.7E-20 146.8 28.6 254 225-518 16-330 (347)
179 3no2_A Uncharacterized protein 99.7 5.4E-15 1.8E-19 139.1 29.8 250 234-495 4-272 (276)
180 3e5z_A Putative gluconolactona 99.7 5.7E-15 2E-19 140.7 30.0 232 223-470 27-283 (296)
181 3dsm_A Uncharacterized protein 99.7 1.1E-14 3.7E-19 140.9 31.9 264 243-518 15-301 (328)
182 3e5z_A Putative gluconolactona 99.7 6.4E-15 2.2E-19 140.3 28.4 245 256-520 18-287 (296)
183 3azo_A Aminopeptidase; POP fam 99.7 1.2E-15 4E-20 162.6 25.4 235 228-474 81-370 (662)
184 2xdw_A Prolyl endopeptidase; a 99.7 8.9E-15 3E-19 157.0 30.9 242 221-471 122-412 (710)
185 2dg1_A DRP35, lactonase; beta 99.7 5.2E-14 1.8E-18 136.3 33.5 241 222-471 43-314 (333)
186 2xdw_A Prolyl endopeptidase; a 99.7 1.7E-14 5.7E-19 154.8 31.3 277 233-521 81-416 (710)
187 1qks_A Cytochrome CD1 nitrite 99.7 2.1E-13 7.3E-18 140.7 38.0 286 225-521 198-540 (567)
188 3c5m_A Oligogalacturonate lyas 99.7 1.9E-15 6.5E-20 149.9 20.8 255 248-521 13-331 (396)
189 1qks_A Cytochrome CD1 nitrite 99.7 9E-14 3.1E-18 143.5 33.5 280 233-520 165-478 (567)
190 1rwi_B Serine/threonine-protei 99.7 2.8E-14 9.7E-19 133.6 26.5 233 225-469 25-262 (270)
191 2bkl_A Prolyl endopeptidase; m 99.7 1.4E-14 4.6E-19 155.1 25.9 274 233-521 77-399 (695)
192 2qc5_A Streptogramin B lactona 99.7 1.9E-12 6.6E-17 122.8 38.0 275 223-517 19-298 (300)
193 3dsm_A Uncharacterized protein 99.6 2.9E-13 9.9E-18 130.8 31.1 223 225-461 45-285 (328)
194 2gop_A Trilobed protease; beta 99.6 4.2E-14 1.4E-18 137.7 25.3 220 224-470 59-330 (347)
195 2mad_H Methylamine dehydrogena 99.6 1.9E-12 6.5E-17 127.1 36.2 267 232-521 29-352 (373)
196 1rwi_B Serine/threonine-protei 99.6 7.2E-14 2.5E-18 130.9 25.1 238 267-521 25-266 (270)
197 3sjl_D Methylamine dehydrogena 99.6 1.5E-13 5.1E-18 133.3 26.7 271 231-521 40-365 (386)
198 2bkl_A Prolyl endopeptidase; m 99.6 9.2E-14 3.1E-18 148.7 25.1 231 220-461 117-381 (695)
199 3no2_A Uncharacterized protein 99.6 3.8E-13 1.3E-17 126.4 25.7 214 276-506 4-230 (276)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4E-12 1.4E-16 121.7 30.6 231 225-469 19-297 (314)
201 2z2n_A Virginiamycin B lyase; 99.6 2.7E-11 9.2E-16 114.8 35.3 234 223-469 56-293 (299)
202 3c75_H MADH, methylamine dehyd 99.6 1.4E-12 4.7E-17 128.9 25.8 268 233-521 82-404 (426)
203 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-12 3.8E-17 141.2 26.7 274 233-521 116-443 (741)
204 2kr4_A Ubiquitin conjugation f 99.5 4.5E-15 1.5E-19 111.1 5.3 52 1-53 15-66 (85)
205 1xip_A Nucleoporin NUP159; bet 99.5 2.4E-13 8.3E-18 132.4 17.9 171 225-417 39-231 (388)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 9.5E-12 3.2E-16 119.1 28.6 246 264-521 16-301 (314)
207 1yr2_A Prolyl oligopeptidase; 99.5 2.7E-12 9.2E-17 138.3 27.0 239 222-471 161-439 (741)
208 2kre_A Ubiquitin conjugation f 99.5 7.8E-15 2.7E-19 113.1 4.8 52 1-53 30-81 (100)
209 1wgm_A Ubiquitin conjugation f 99.5 1.8E-14 6E-19 110.6 6.7 52 1-53 23-75 (98)
210 3hrp_A Uncharacterized protein 99.5 3.8E-11 1.3E-15 119.4 31.7 239 224-468 131-405 (409)
211 3sjl_D Methylamine dehydrogena 99.5 7.8E-12 2.7E-16 121.2 25.7 254 228-499 82-384 (386)
212 2qc5_A Streptogramin B lactona 99.5 2.2E-10 7.6E-15 108.5 33.6 233 223-469 61-296 (300)
213 3g4e_A Regucalcin; six bladed 99.5 4.1E-11 1.4E-15 113.9 27.8 224 225-462 14-261 (297)
214 3dr2_A Exported gluconolactona 99.4 3.1E-11 1.1E-15 115.2 25.2 233 261-512 40-300 (305)
215 3dr2_A Exported gluconolactona 99.4 4.6E-11 1.6E-15 114.1 25.8 224 224-463 45-297 (305)
216 2f42_A STIP1 homology and U-bo 99.4 7.1E-14 2.4E-18 118.5 5.3 52 1-53 107-159 (179)
217 2yu4_A E3 SUMO-protein ligase 99.4 7.2E-14 2.5E-18 106.9 4.8 53 1-53 8-69 (94)
218 2mad_H Methylamine dehydrogena 99.4 7E-10 2.4E-14 108.7 34.5 238 228-481 70-356 (373)
219 2ghs_A AGR_C_1268P; regucalcin 99.4 4.3E-10 1.5E-14 108.3 32.0 222 225-462 50-291 (326)
220 3hrp_A Uncharacterized protein 99.4 2.4E-10 8.3E-15 113.6 30.9 239 266-517 131-408 (409)
221 3g4e_A Regucalcin; six bladed 99.4 5.2E-10 1.8E-14 106.3 31.6 231 264-508 11-261 (297)
222 1xip_A Nucleoporin NUP159; bet 99.4 1.5E-11 5.2E-16 119.7 17.0 175 267-460 39-231 (388)
223 3iuj_A Prolyl endopeptidase; h 99.4 1.2E-10 4.1E-15 124.3 25.5 241 220-472 125-404 (693)
224 3c75_H MADH, methylamine dehyd 99.3 2.3E-10 7.8E-15 113.0 24.3 240 228-482 122-409 (426)
225 2ghs_A AGR_C_1268P; regucalcin 99.3 2.2E-09 7.5E-14 103.4 29.8 223 268-508 51-291 (326)
226 2ece_A 462AA long hypothetical 99.3 3.8E-09 1.3E-13 103.1 30.4 229 275-507 93-399 (462)
227 3iuj_A Prolyl endopeptidase; h 99.3 3.4E-10 1.2E-14 120.8 23.8 242 263-521 126-407 (693)
228 2qe8_A Uncharacterized protein 99.3 6.2E-10 2.1E-14 108.1 23.6 234 224-462 17-310 (343)
229 1mda_H Methylamine dehydrogena 99.3 1.7E-10 5.9E-15 112.0 19.0 248 246-521 47-348 (368)
230 2qe8_A Uncharacterized protein 99.3 1.1E-09 3.9E-14 106.2 24.8 241 266-512 17-314 (343)
231 2ece_A 462AA long hypothetical 99.2 6.8E-09 2.3E-13 101.3 27.8 222 233-461 93-399 (462)
232 1kb0_A Quinohemoprotein alcoho 99.2 3.7E-09 1.3E-13 111.9 27.8 274 234-519 127-567 (677)
233 1kb0_A Quinohemoprotein alcoho 99.2 1.6E-09 5.4E-14 114.8 24.8 273 235-521 77-509 (677)
234 2hz6_A Endoplasmic reticulum t 99.2 4.7E-12 1.6E-16 124.3 4.9 254 234-518 8-278 (369)
235 1yiq_A Quinohemoprotein alcoho 99.2 2.5E-09 8.6E-14 113.5 26.2 274 235-521 70-507 (689)
236 1fwx_A Nitrous oxide reductase 99.2 2.1E-09 7.2E-14 108.6 22.3 270 237-521 17-433 (595)
237 3hxj_A Pyrrolo-quinoline quino 99.2 1.3E-09 4.6E-14 104.8 19.2 265 226-521 62-326 (330)
238 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.4E-08 2.5E-12 94.6 31.2 267 234-521 52-339 (376)
239 1yiq_A Quinohemoprotein alcoho 99.1 1.9E-08 6.6E-13 106.7 28.2 260 235-503 121-532 (689)
240 2c2l_A CHIP, carboxy terminus 99.1 2.3E-11 8E-16 114.6 5.0 52 1-53 209-261 (281)
241 3hxj_A Pyrrolo-quinoline quino 99.1 1.2E-09 4.3E-14 105.0 17.3 256 231-517 27-282 (330)
242 1t1h_A Gspef-atpub14, armadill 99.1 9.6E-11 3.3E-15 86.5 5.4 52 1-53 9-61 (78)
243 1mda_H Methylamine dehydrogena 99.1 2.3E-09 7.7E-14 104.1 16.6 244 228-497 69-365 (368)
244 2iwa_A Glutamine cyclotransfer 99.1 3E-08 1E-12 91.1 23.1 199 224-430 21-238 (266)
245 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.1E-07 1.1E-11 90.0 32.1 261 234-516 102-375 (376)
246 3htk_C E3 SUMO-protein ligase 99.1 6.7E-11 2.3E-15 104.9 3.7 53 1-53 182-238 (267)
247 1npe_A Nidogen, entactin; glyc 99.0 1.2E-06 4.2E-11 81.3 31.5 248 236-501 2-263 (267)
248 2iwa_A Glutamine cyclotransfer 99.0 2E-07 6.9E-12 85.5 25.2 200 256-469 10-233 (266)
249 3nol_A Glutamine cyclotransfer 99.0 1.7E-07 5.7E-12 85.0 24.0 199 256-469 32-252 (262)
250 2fp8_A Strictosidine synthase; 99.0 2.4E-07 8.1E-12 88.8 26.3 248 266-523 19-317 (322)
251 4a2l_A BT_4663, two-component 99.0 4.1E-06 1.4E-10 90.7 38.7 286 223-519 262-571 (795)
252 4a2l_A BT_4663, two-component 99.0 6.2E-06 2.1E-10 89.3 39.4 282 223-518 309-613 (795)
253 3nol_A Glutamine cyclotransfer 99.0 1.4E-07 4.8E-12 85.5 21.5 191 221-420 40-245 (262)
254 1fwx_A Nitrous oxide reductase 98.9 2.6E-08 8.7E-13 100.7 17.5 218 233-462 99-407 (595)
255 1npe_A Nidogen, entactin; glyc 98.9 2E-06 7E-11 79.8 29.6 219 225-455 37-263 (267)
256 3nok_A Glutaminyl cyclase; bet 98.9 4.8E-07 1.6E-11 82.0 22.9 199 256-469 44-262 (268)
257 1kv9_A Type II quinohemoprotei 98.9 4.7E-07 1.6E-11 95.7 26.6 195 235-436 66-340 (668)
258 2xbg_A YCF48-like protein; pho 98.9 1.2E-05 4.2E-10 76.9 34.0 277 223-517 35-320 (327)
259 2p4o_A Hypothetical protein; p 98.9 3.8E-06 1.3E-10 79.7 29.7 234 256-509 23-278 (306)
260 3mbr_X Glutamine cyclotransfer 98.9 1.7E-06 5.8E-11 77.7 25.2 198 256-469 10-231 (243)
261 2hz6_A Endoplasmic reticulum t 98.9 7.5E-10 2.6E-14 108.6 3.5 176 276-469 8-190 (369)
262 3m62_A Ubiquitin conjugation f 98.9 1.2E-09 4E-14 114.5 4.8 53 1-53 892-944 (968)
263 3nok_A Glutaminyl cyclase; bet 98.9 6.2E-07 2.1E-11 81.2 21.9 190 221-420 52-255 (268)
264 2fp8_A Strictosidine synthase; 98.8 3.7E-06 1.2E-10 80.5 28.5 233 226-469 21-311 (322)
265 1kv9_A Type II quinohemoprotei 98.8 1.9E-06 6.4E-11 91.1 28.6 237 235-483 117-496 (668)
266 3mbr_X Glutamine cyclotransfer 98.8 1.8E-06 6.3E-11 77.5 24.1 189 223-420 20-224 (243)
267 3v9f_A Two-component system se 98.8 3.7E-05 1.3E-09 83.0 37.5 279 223-518 312-610 (781)
268 1k3i_A Galactose oxidase precu 98.8 2.8E-07 9.7E-12 97.5 20.1 270 228-508 190-530 (656)
269 3v9f_A Two-component system se 98.8 2.6E-05 8.9E-10 84.3 35.4 286 223-520 257-569 (781)
270 2p4o_A Hypothetical protein; p 98.7 2.7E-05 9.2E-10 73.8 30.6 231 225-463 33-278 (306)
271 1w6s_A Methanol dehydrogenase 98.7 1E-05 3.5E-10 83.7 29.1 198 235-438 62-351 (599)
272 2ad6_A Methanol dehydrogenase 98.7 1.8E-05 6.1E-10 81.8 30.7 196 235-438 62-344 (571)
273 2djb_A Polycomb group ring fin 98.7 3.4E-08 1.2E-12 71.2 5.9 53 1-53 16-68 (72)
274 2ad6_A Methanol dehydrogenase 98.6 1E-05 3.6E-10 83.6 26.4 256 235-504 115-522 (571)
275 3ztg_A E3 ubiquitin-protein li 98.6 2.8E-08 9.4E-13 75.7 5.2 52 1-52 14-68 (92)
276 2xe4_A Oligopeptidase B; hydro 98.6 9.4E-06 3.2E-10 87.1 26.8 194 225-427 175-398 (751)
277 1w6s_A Methanol dehydrogenase 98.6 1.8E-05 6.1E-10 81.9 27.7 153 238-396 124-350 (599)
278 1jm7_A BRCA1, breast cancer ty 98.6 7.2E-08 2.4E-12 76.5 6.9 52 1-53 22-76 (112)
279 1flg_A Protein (quinoprotein e 98.6 5E-05 1.7E-09 78.6 29.6 158 235-396 117-363 (582)
280 2yur_A Retinoblastoma-binding 98.6 6.4E-08 2.2E-12 70.1 5.4 53 1-53 16-71 (74)
281 1flg_A Protein (quinoprotein e 98.6 4.5E-05 1.5E-09 79.0 28.5 198 235-438 68-364 (582)
282 3v64_C Agrin; beta propeller, 98.6 0.00047 1.6E-08 66.5 34.1 232 224-470 34-272 (349)
283 2y43_A E3 ubiquitin-protein li 98.6 6.1E-08 2.1E-12 74.9 5.1 53 1-53 23-75 (99)
284 3qqz_A Putative uncharacterize 98.5 7.8E-05 2.7E-09 67.8 26.2 200 224-426 27-250 (255)
285 1ijq_A LDL receptor, low-densi 98.5 0.00062 2.1E-08 64.6 33.2 225 280-520 4-239 (316)
286 2xeu_A Ring finger protein 4; 98.5 6.2E-08 2.1E-12 68.1 3.8 52 1-53 4-62 (64)
287 3lrq_A E3 ubiquitin-protein li 98.5 1.2E-07 4.3E-12 73.1 5.6 53 1-53 23-76 (100)
288 2ecy_A TNF receptor-associated 98.5 5E-08 1.7E-12 69.0 3.1 48 2-50 17-65 (66)
289 1ijq_A LDL receptor, low-densi 98.5 0.00095 3.2E-08 63.3 33.1 223 237-470 3-235 (316)
290 3ng2_A RNF4, snurf, ring finge 98.5 9.5E-08 3.3E-12 68.7 3.9 52 1-53 11-69 (71)
291 1z6u_A NP95-like ring finger p 98.5 1.6E-07 5.4E-12 78.2 5.6 47 1-48 79-126 (150)
292 3hct_A TNF receptor-associated 98.5 1.3E-07 4.5E-12 75.6 4.9 52 1-53 19-71 (118)
293 2csy_A Zinc finger protein 183 98.5 1.9E-07 6.5E-12 69.1 5.4 45 1-46 16-60 (81)
294 2ecw_A Tripartite motif-contai 98.5 1.9E-07 6.4E-12 69.9 5.5 53 1-54 20-78 (85)
295 3qqz_A Putative uncharacterize 98.5 0.0003 1E-08 64.0 27.7 204 260-469 21-249 (255)
296 3tc9_A Hypothetical hydrolase; 98.5 6.5E-05 2.2E-09 74.8 25.3 153 267-429 138-301 (430)
297 3fl2_A E3 ubiquitin-protein li 98.4 2.1E-07 7.3E-12 75.1 5.6 46 1-47 53-99 (124)
298 3v65_B Low-density lipoprotein 98.4 0.00023 7.8E-09 69.7 28.4 206 224-438 116-327 (386)
299 3v65_B Low-density lipoprotein 98.4 0.0005 1.7E-08 67.3 30.7 223 279-518 89-317 (386)
300 3p5b_L Low density lipoprotein 98.4 0.00064 2.2E-08 66.8 31.5 227 279-520 85-321 (400)
301 3v64_C Agrin; beta propeller, 98.4 0.00037 1.3E-08 67.2 29.2 206 224-438 73-284 (349)
302 2d8t_A Dactylidin, ring finger 98.4 1.1E-07 3.9E-12 68.2 3.2 52 1-53 16-67 (71)
303 1k3i_A Galactose oxidase precu 98.4 3.2E-05 1.1E-09 81.7 23.2 242 270-519 190-497 (656)
304 2ysl_A Tripartite motif-contai 98.4 2.3E-07 8E-12 67.1 4.7 49 1-50 21-72 (73)
305 3p5b_L Low density lipoprotein 98.4 0.0014 4.8E-08 64.4 33.4 225 236-469 84-316 (400)
306 3tc9_A Hypothetical hydrolase; 98.4 0.00024 8.1E-09 70.7 28.1 155 225-387 138-300 (430)
307 4hw6_A Hypothetical protein, I 98.4 0.00025 8.4E-09 70.6 28.0 237 267-518 140-432 (433)
308 4ayc_A E3 ubiquitin-protein li 98.4 2E-07 6.8E-12 76.8 4.5 45 1-46 54-98 (138)
309 1rmd_A RAG1; V(D)J recombinati 98.4 3.1E-07 1.1E-11 73.2 5.6 52 1-53 24-76 (116)
310 2ecv_A Tripartite motif-contai 98.4 2.8E-07 9.4E-12 69.0 4.6 52 1-53 20-77 (85)
311 2ckl_B Ubiquitin ligase protei 98.4 3.9E-07 1.3E-11 77.7 6.1 47 2-48 56-103 (165)
312 2ckl_A Polycomb group ring fin 98.4 3.8E-07 1.3E-11 71.6 5.2 48 1-48 16-63 (108)
313 3amr_A 3-phytase; beta-propell 98.4 0.0002 6.7E-09 67.8 24.4 194 234-438 39-273 (355)
314 2egp_A Tripartite motif-contai 98.3 7.1E-08 2.4E-12 71.1 0.6 52 1-53 13-71 (79)
315 4hw6_A Hypothetical protein, I 98.3 0.00051 1.7E-08 68.3 28.6 235 225-468 140-430 (433)
316 2ct2_A Tripartite motif protei 98.3 1.1E-06 3.6E-11 66.2 6.5 54 1-55 16-76 (88)
317 3sre_A PON1, serum paraoxonase 98.3 0.00012 4.2E-09 70.1 22.1 171 285-463 81-287 (355)
318 3kya_A Putative phosphatase; s 98.3 0.001 3.5E-08 66.4 29.2 246 268-524 141-480 (496)
319 2xe4_A Oligopeptidase B; hydro 98.3 6.9E-05 2.4E-09 80.4 21.9 191 312-515 175-394 (751)
320 1g25_A CDK-activating kinase a 98.3 6.1E-07 2.1E-11 63.1 3.7 52 1-53 4-61 (65)
321 3amr_A 3-phytase; beta-propell 98.2 0.00041 1.4E-08 65.5 23.5 186 321-518 39-262 (355)
322 3s94_A LRP-6, low-density lipo 98.2 0.0082 2.8E-07 62.4 36.0 284 224-520 84-424 (619)
323 3sov_A LRP-6, low-density lipo 98.2 0.0015 5.2E-08 61.9 27.6 205 225-438 36-247 (318)
324 2p9w_A MAL S 1 allergenic prot 98.2 0.0011 3.9E-08 62.0 25.1 201 227-429 16-265 (334)
325 3sov_A LRP-6, low-density lipo 98.2 0.0022 7.7E-08 60.7 28.0 223 286-521 12-240 (318)
326 3hcs_A TNF receptor-associated 98.2 1.3E-06 4.4E-11 74.9 4.9 52 1-53 19-71 (170)
327 3m0c_C LDL receptor, low-densi 98.2 0.005 1.7E-07 65.7 33.0 225 237-470 397-629 (791)
328 2ysj_A Tripartite motif-contai 98.2 2.1E-06 7E-11 59.9 4.6 40 1-41 21-63 (63)
329 3s94_A LRP-6, low-density lipo 98.1 0.012 4E-07 61.3 34.8 199 224-432 40-246 (619)
330 2ea6_A Ring finger protein 4; 98.1 1.8E-06 6.3E-11 61.5 3.7 44 2-46 17-67 (69)
331 3m0c_C LDL receptor, low-densi 98.1 0.0054 1.8E-07 65.5 31.8 220 285-519 402-632 (791)
332 1jm7_B BARD1, BRCA1-associated 98.1 6.8E-07 2.3E-11 71.2 1.2 51 1-53 23-73 (117)
333 2ism_A Putative oxidoreductase 98.1 0.0012 4E-08 63.8 24.3 224 225-462 32-334 (352)
334 3kya_A Putative phosphatase; s 98.1 0.0041 1.4E-07 62.1 28.1 158 225-386 140-339 (496)
335 2ect_A Ring finger protein 126 98.1 3.7E-06 1.3E-10 61.5 4.5 51 2-53 17-70 (78)
336 2xbg_A YCF48-like protein; pho 98.0 0.0058 2E-07 58.1 28.2 230 224-469 80-318 (327)
337 1chc_A Equine herpes virus-1 r 98.0 5.3E-06 1.8E-10 58.8 4.9 45 2-46 7-51 (68)
338 2ism_A Putative oxidoreductase 98.0 0.0058 2E-07 58.8 28.0 231 266-507 31-333 (352)
339 3ii7_A Kelch-like protein 7; p 98.0 0.0042 1.4E-07 58.4 26.5 236 235-484 12-283 (306)
340 1iym_A EL5; ring-H2 finger, ub 98.0 3.9E-06 1.3E-10 56.6 3.7 46 2-47 7-55 (55)
341 2vpj_A Kelch-like protein 12; 98.0 0.0026 8.9E-08 59.6 24.8 236 234-482 14-287 (301)
342 2p9w_A MAL S 1 allergenic prot 98.0 0.0026 8.9E-08 59.6 23.5 207 309-517 11-263 (334)
343 3a9g_A Putative uncharacterize 98.0 0.014 4.7E-07 56.2 29.8 229 266-507 29-330 (354)
344 3knv_A TNF receptor-associated 98.0 1.6E-06 5.6E-11 71.2 1.3 49 1-50 32-81 (141)
345 4ap4_A E3 ubiquitin ligase RNF 98.0 3.6E-06 1.2E-10 68.9 3.4 54 1-55 8-68 (133)
346 2ecm_A Ring finger and CHY zin 97.9 1.1E-05 3.8E-10 54.3 4.7 44 2-46 7-54 (55)
347 2ecl_A Ring-box protein 2; RNF 97.9 6.7E-06 2.3E-10 60.4 3.8 49 2-50 17-79 (81)
348 3ott_A Two-component system se 97.9 0.034 1.2E-06 59.5 34.4 278 224-517 63-350 (758)
349 2ecj_A Tripartite motif-contai 97.9 4.9E-06 1.7E-10 56.8 2.8 40 1-41 16-58 (58)
350 3ii7_A Kelch-like protein 7; p 97.9 0.0045 1.5E-07 58.2 23.8 227 278-520 13-273 (306)
351 3a9g_A Putative uncharacterize 97.9 0.012 4.2E-07 56.5 26.8 227 225-461 30-330 (354)
352 1x4j_A Ring finger protein 38; 97.8 1.6E-05 5.5E-10 57.5 4.4 46 2-48 25-73 (75)
353 3l11_A E3 ubiquitin-protein li 97.8 3.6E-06 1.2E-10 66.8 0.8 45 2-47 17-62 (115)
354 1n7d_A LDL receptor, low-densi 97.8 0.0001 3.5E-09 78.1 12.1 216 244-468 385-611 (699)
355 2l0b_A E3 ubiquitin-protein li 97.8 1.6E-05 5.5E-10 59.9 4.1 44 2-46 42-88 (91)
356 1zgk_A Kelch-like ECH-associat 97.8 0.0081 2.8E-07 56.5 23.9 238 232-483 22-297 (308)
357 3ei3_A DNA damage-binding prot 97.8 0.067 2.3E-06 59.7 34.4 227 279-520 708-1000(1158)
358 2xn4_A Kelch-like protein 2; s 97.8 0.0092 3.2E-07 55.9 24.1 232 235-480 16-283 (302)
359 2vpj_A Kelch-like protein 12; 97.8 0.0037 1.3E-07 58.5 21.3 229 276-520 14-279 (301)
360 3sre_A PON1, serum paraoxonase 97.8 0.0091 3.1E-07 57.1 23.8 194 225-427 51-296 (355)
361 2ecn_A Ring finger protein 141 97.8 4.8E-06 1.6E-10 59.4 0.7 51 1-53 16-66 (70)
362 2g8s_A Glucose/sorbosone dehyd 97.7 0.03 1E-06 53.8 27.4 245 266-517 18-350 (353)
363 4ap4_A E3 ubiquitin ligase RNF 97.7 1.6E-05 5.5E-10 64.9 3.6 52 1-53 73-131 (133)
364 1n7d_A LDL receptor, low-densi 97.7 0.00022 7.5E-09 75.5 12.8 219 286-518 385-613 (699)
365 4a0p_A LRP6, LRP-6, low-densit 97.7 0.072 2.5E-06 55.4 33.5 225 279-520 8-238 (628)
366 2kiz_A E3 ubiquitin-protein li 97.7 6.6E-05 2.2E-09 53.2 5.5 45 2-47 16-63 (69)
367 2xn4_A Kelch-like protein 2; s 97.7 0.013 4.3E-07 54.9 22.9 228 277-520 16-277 (302)
368 2ep4_A Ring finger protein 24; 97.6 6.1E-05 2.1E-09 54.2 5.0 44 2-46 17-63 (74)
369 2xzh_A Clathrin heavy chain 1; 97.6 0.043 1.5E-06 51.0 29.7 225 229-469 72-328 (365)
370 4a0p_A LRP6, LRP-6, low-densit 97.6 0.099 3.4E-06 54.3 39.9 196 224-430 37-238 (628)
371 4asc_A Kelch repeat and BTB do 97.5 0.02 6.8E-07 54.0 22.8 225 279-520 7-278 (315)
372 2g8s_A Glucose/sorbosone dehyd 97.5 0.019 6.4E-07 55.2 22.8 237 225-469 19-350 (353)
373 1bor_A Transcription factor PM 97.5 1.5E-05 5.2E-10 53.8 0.3 44 1-48 7-50 (56)
374 4asc_A Kelch repeat and BTB do 97.5 0.073 2.5E-06 50.0 25.8 229 237-479 7-283 (315)
375 1zgk_A Kelch-like ECH-associat 97.5 0.023 7.8E-07 53.4 21.9 229 276-520 24-288 (308)
376 3dpl_R Ring-box protein 1; ubi 97.4 0.00012 4E-09 56.5 4.2 46 2-47 39-101 (106)
377 1bpo_A Protein (clathrin); cla 97.4 0.1 3.6E-06 50.4 31.2 229 228-470 70-328 (494)
378 1e4u_A Transcriptional repress 97.4 9.9E-05 3.4E-09 53.4 3.4 53 1-53 12-68 (78)
379 3ei3_A DNA damage-binding prot 97.4 0.29 9.9E-06 54.6 37.8 279 223-520 553-914 (1158)
380 2woz_A Kelch repeat and BTB do 97.3 0.091 3.1E-06 49.4 24.6 225 279-520 18-288 (318)
381 2vje_A E3 ubiquitin-protein li 97.3 0.00024 8.2E-09 49.2 4.6 49 2-53 10-61 (64)
382 1cru_A Protein (soluble quinop 97.3 0.16 5.3E-06 50.5 31.8 109 266-376 27-162 (454)
383 2vje_B MDM4 protein; proto-onc 97.3 0.00022 7.5E-09 49.2 4.1 44 2-46 9-55 (63)
384 3ott_A Two-component system se 97.3 0.26 8.9E-06 52.6 35.1 285 225-519 192-502 (758)
385 2uvk_A YJHT; unknown function, 97.3 0.033 1.1E-06 53.4 20.7 241 234-485 19-354 (357)
386 1v87_A Deltex protein 2; ring- 97.2 0.00016 5.4E-09 57.1 3.2 45 2-47 27-94 (114)
387 3sbq_A Nitrous-oxide reductase 97.2 0.11 3.7E-06 51.9 23.6 263 237-508 72-454 (638)
388 1wim_A KIAA0161 protein; ring 97.2 0.00015 5.1E-09 54.9 2.6 53 1-53 6-72 (94)
389 4ic3_A E3 ubiquitin-protein li 97.2 0.00017 5.9E-09 51.7 2.6 41 1-46 25-66 (74)
390 3pbp_A Nucleoporin NUP82; beta 97.2 0.064 2.2E-06 51.8 20.9 146 276-424 31-207 (452)
391 3pbp_A Nucleoporin NUP82; beta 97.2 0.026 8.8E-07 54.5 18.1 151 232-384 29-208 (452)
392 2uvk_A YJHT; unknown function, 97.1 0.07 2.4E-06 51.1 21.7 232 276-521 19-344 (357)
393 2woz_A Kelch repeat and BTB do 97.1 0.11 3.9E-06 48.7 22.2 230 236-479 17-293 (318)
394 3das_A Putative oxidoreductase 97.0 0.27 9.2E-06 46.7 32.6 233 265-507 31-326 (347)
395 2ecg_A Baculoviral IAP repeat- 97.0 0.00042 1.4E-08 49.8 3.0 41 2-47 27-68 (75)
396 3das_A Putative oxidoreductase 96.9 0.29 9.9E-06 46.4 27.8 228 225-461 33-326 (347)
397 4a0k_B E3 ubiquitin-protein li 96.9 0.00017 5.7E-09 56.4 0.0 46 2-47 50-112 (117)
398 2zwa_A Leucine carboxyl methyl 96.8 0.06 2.1E-06 56.8 19.3 197 233-432 396-638 (695)
399 1bpo_A Protein (clathrin); cla 96.8 0.44 1.5E-05 46.1 30.3 259 244-520 47-332 (494)
400 2d8s_A Cellular modulator of i 96.7 0.002 6.8E-08 46.7 4.6 47 2-49 17-72 (80)
401 2xzh_A Clathrin heavy chain 1; 96.6 0.43 1.5E-05 44.4 30.7 259 244-520 48-333 (365)
402 1tl2_A L10, protein (tachylect 96.6 0.094 3.2E-06 45.8 15.0 153 359-520 42-209 (236)
403 2yho_A E3 ubiquitin-protein li 96.5 0.0018 6.1E-08 46.9 3.1 42 1-47 19-61 (79)
404 1tl2_A L10, protein (tachylect 96.3 0.096 3.3E-06 45.7 13.3 144 225-381 42-203 (236)
405 2ct0_A Non-SMC element 1 homol 96.2 0.0071 2.4E-07 42.7 4.9 45 2-46 17-63 (74)
406 1xi4_A Clathrin heavy chain; a 96.2 0.26 8.9E-06 55.0 19.3 226 230-469 72-327 (1630)
407 3i2d_A E3 SUMO-protein ligase 96.2 0.0054 1.9E-07 57.6 5.4 53 1-53 250-306 (371)
408 1cru_A Protein (soluble quinop 96.2 0.42 1.4E-05 47.4 19.5 102 359-461 28-162 (454)
409 2be1_A Serine/threonine-protei 95.9 0.12 4.3E-06 48.7 13.5 116 278-397 11-139 (339)
410 2ea5_A Cell growth regulator w 95.7 0.0082 2.8E-07 41.9 3.6 45 2-53 17-62 (68)
411 4fo9_A E3 SUMO-protein ligase 95.6 0.014 4.7E-07 54.7 5.7 52 1-52 216-271 (360)
412 3s25_A Hypothetical 7-bladed b 95.6 1.5 5E-05 40.8 24.0 200 229-462 58-281 (302)
413 2be1_A Serine/threonine-protei 95.6 0.017 5.8E-07 54.7 6.2 196 235-434 10-236 (339)
414 2wg3_C Hedgehog-interacting pr 95.5 2.3 7.7E-05 42.2 25.7 110 266-378 14-159 (463)
415 1xi4_A Clathrin heavy chain; a 95.1 1.4 4.9E-05 49.3 20.0 257 244-518 47-330 (1630)
416 2zwa_A Leucine carboxyl methyl 95.0 0.98 3.4E-05 47.5 18.1 198 320-520 396-636 (695)
417 3b7f_A Glycosyl hydrolase, BNR 94.7 3.3 0.00011 39.9 28.6 273 235-513 22-366 (394)
418 2kkx_A Uncharacterized protein 94.6 0.044 1.5E-06 40.0 4.6 53 1-53 28-85 (102)
419 3s25_A Hypothetical 7-bladed b 94.3 3.3 0.00011 38.3 28.5 244 233-519 23-293 (302)
420 3b7f_A Glycosyl hydrolase, BNR 93.8 5 0.00017 38.6 26.9 263 224-497 55-391 (394)
421 3q6k_A 43.2 kDa salivary prote 93.8 4.9 0.00017 38.4 20.5 192 224-418 87-342 (381)
422 3sbq_A Nitrous-oxide reductase 92.8 8.7 0.0003 38.6 23.3 190 321-518 141-407 (638)
423 2wg3_C Hedgehog-interacting pr 92.8 8.2 0.00028 38.1 29.7 239 225-470 15-370 (463)
424 3vk6_A E3 ubiquitin-protein li 92.1 0.19 6.4E-06 37.2 4.4 44 2-46 3-48 (101)
425 4hvt_A Ritya.17583.B, post-pro 92.0 13 0.00046 38.9 24.9 232 228-471 133-428 (711)
426 1vyx_A ORF K3, K3RING; zinc-bi 91.0 0.19 6.5E-06 33.8 3.3 44 2-46 8-58 (60)
427 2w6b_A RHO guanine nucleotide 87.3 2.4 8.1E-05 26.9 5.9 44 82-136 7-50 (56)
428 1l8d_A DNA double-strand break 86.4 0.51 1.7E-05 36.4 3.3 13 35-47 47-59 (112)
429 4gq2_M Nucleoporin NUP120; bet 86.0 18 0.00061 39.4 16.4 39 312-350 237-275 (950)
430 1sqj_A OXG-RCBH, oligoxylogluc 85.9 39 0.0013 35.9 27.5 241 265-508 14-315 (789)
431 3hnw_A Uncharacterized protein 85.8 3.5 0.00012 32.9 7.9 64 73-136 70-133 (138)
432 3cve_A Homer protein homolog 1 85.0 4 0.00014 28.1 6.7 55 82-136 11-65 (72)
433 3ra3_A P1C; coiled coil domain 84.9 0.77 2.6E-05 23.6 2.3 24 79-102 1-24 (28)
434 2lw1_A ABC transporter ATP-bin 84.8 3.2 0.00011 30.3 6.8 56 75-132 19-75 (89)
435 3cvf_A Homer-3, homer protein 84.4 4.1 0.00014 28.7 6.7 55 82-136 17-71 (79)
436 3q6k_A 43.2 kDa salivary prote 82.3 35 0.0012 32.5 22.6 172 333-507 124-342 (381)
437 4h22_A Leucine-rich repeat fli 81.1 9.2 0.00031 28.2 7.8 64 74-137 19-82 (103)
438 1sqj_A OXG-RCBH, oligoxylogluc 80.2 65 0.0022 34.2 28.0 154 223-378 14-190 (789)
439 2cn3_A Xyloglucanase, beta-1,4 80.1 62 0.0021 34.0 28.4 239 267-507 24-320 (737)
440 3qhy_B Beta-lactamase inhibito 80.0 34 0.0012 30.9 16.3 217 225-469 25-242 (282)
441 2k5c_A Uncharacterized protein 77.4 0.25 8.6E-06 34.3 -1.3 18 36-53 9-26 (95)
442 1go4_E MAD1 (mitotic arrest de 76.5 7.1 0.00024 28.9 6.0 38 72-109 13-50 (100)
443 1wp5_A Topoisomerase IV; broke 75.1 53 0.0018 30.4 25.6 238 275-518 3-276 (323)
444 3lay_A Zinc resistance-associa 74.2 14 0.00048 30.7 8.1 48 86-133 86-133 (175)
445 3ljm_A Coil Ser L9C; de novo d 73.8 5.3 0.00018 21.0 3.4 25 78-102 1-25 (31)
446 3qhy_B Beta-lactamase inhibito 72.4 56 0.0019 29.5 18.6 223 267-520 25-247 (282)
447 1t6f_A Geminin; coiled-coil, c 71.6 8.1 0.00028 22.1 4.0 28 85-126 7-34 (37)
448 3no0_A DNA gyrase subunit A; D 69.8 63 0.0022 29.1 22.5 200 222-429 22-246 (276)
449 1fmh_A General control protein 68.9 11 0.00036 20.2 3.9 26 75-100 5-30 (33)
450 3a7p_A Autophagy protein 16; c 68.8 12 0.0004 30.0 6.1 12 92-103 96-107 (152)
451 3he5_A Synzip1; heterodimeric 68.6 15 0.00052 21.5 5.8 44 71-128 3-46 (49)
452 2yy0_A C-MYC-binding protein; 68.6 7 0.00024 25.2 4.0 25 78-102 19-43 (53)
453 2xv5_A Lamin-A/C; structural p 67.8 13 0.00043 25.9 5.4 57 75-131 2-58 (74)
454 4hvt_A Ritya.17583.B, post-pro 63.9 1.4E+02 0.0049 31.0 20.8 230 273-518 137-429 (711)
455 4b6x_A AVRRPS4, avirulence pro 63.9 29 0.001 24.0 6.4 54 74-136 25-78 (90)
456 2lf0_A Uncharacterized protein 63.7 15 0.00051 27.7 5.3 48 86-135 11-58 (123)
457 3l6v_A GYRA, DNA gyrase subuni 63.1 1E+02 0.0035 29.1 27.0 150 274-428 4-179 (370)
458 3vp9_A General transcriptional 63.0 9 0.00031 27.8 4.0 68 64-137 7-85 (92)
459 3uc1_A DNA gyrase subunit A; D 60.6 1.1E+02 0.0036 28.4 23.8 204 224-429 42-279 (327)
460 2eqb_B RAB guanine nucleotide 60.0 37 0.0013 24.8 6.8 15 122-136 49-63 (97)
461 2wuj_A Septum site-determining 59.6 7 0.00024 25.6 2.8 33 69-101 25-57 (57)
462 4e61_A Protein BIM1; EB1-like 56.6 30 0.001 25.8 5.9 24 112-135 31-54 (106)
463 1zvt_A Topoisomerase IV subuni 56.3 1.1E+02 0.0037 27.1 11.7 144 371-519 4-163 (256)
464 3sja_C Golgi to ER traffic pro 54.3 39 0.0013 22.7 5.6 51 85-137 6-56 (65)
465 3uc1_A DNA gyrase subunit A; D 54.2 1.4E+02 0.0046 27.7 25.2 191 235-428 3-227 (327)
466 4fhn_B Nucleoporin NUP120; pro 54.1 1.1E+02 0.0036 34.2 12.9 38 312-349 239-276 (1139)
467 3zwu_A Alkaline phosphatase PH 52.9 42 0.0014 34.1 8.5 60 359-418 477-549 (592)
468 3hnw_A Uncharacterized protein 52.7 55 0.0019 25.9 7.5 60 78-137 68-127 (138)
469 3f7f_A Nucleoporin NUP120; nuc 52.1 61 0.0021 33.7 9.5 37 312-350 223-259 (729)
470 2b5u_A Colicin E3; high resolu 51.3 28 0.00094 33.7 6.3 29 75-104 305-333 (551)
471 2wt7_B Transcription factor MA 51.2 31 0.0011 24.9 5.2 38 81-132 51-88 (90)
472 2dgc_A Protein (GCN4); basic d 50.1 14 0.00049 24.7 3.1 30 73-102 32-61 (63)
473 3na7_A HP0958; flagellar bioge 48.9 43 0.0015 29.8 7.1 57 78-134 90-146 (256)
474 4a9v_A PHOX; hydrolase, beta-p 48.8 73 0.0025 32.1 9.3 62 358-419 476-550 (592)
475 4a9v_A PHOX; hydrolase, beta-p 48.4 72 0.0025 32.2 9.2 62 400-462 476-550 (592)
476 4fhn_B Nucleoporin NUP120; pro 47.8 61 0.0021 36.1 9.7 39 358-396 238-276 (1139)
477 3sjb_C Golgi to ER traffic pro 46.9 34 0.0012 24.8 4.7 54 82-137 20-73 (93)
478 2wt7_A Proto-oncogene protein 45.7 33 0.0011 22.9 4.4 31 73-103 25-55 (63)
479 1gd2_E Transcription factor PA 45.4 23 0.00078 24.3 3.6 30 73-102 38-67 (70)
480 2qdq_A Talin-1; dimerisation d 44.1 29 0.00099 21.8 3.5 27 111-137 13-39 (50)
481 2ko5_A Ring finger protein Z; 43.8 24 0.00081 25.6 3.5 30 19-48 45-74 (99)
482 3i00_A HIP-I, huntingtin-inter 43.6 82 0.0028 24.2 6.9 33 73-105 24-60 (120)
483 3zwu_A Alkaline phosphatase PH 42.7 78 0.0027 32.2 8.6 59 401-460 477-548 (592)
484 3k1l_B Fancl; UBC, ring, RWD, 42.6 6.9 0.00023 36.4 0.8 35 2-36 310-351 (381)
485 1wt6_A Myotonin-protein kinase 42.5 85 0.0029 22.0 7.8 39 65-103 8-49 (81)
486 1zi0_A DNA gyrase subunit A; b 42.1 2E+02 0.0069 26.1 26.6 238 275-518 1-276 (307)
487 1gu4_A CAAT/enhancer binding p 41.8 32 0.0011 24.2 3.9 28 76-103 41-68 (78)
488 2jee_A YIIU; FTSZ, septum, coi 41.3 91 0.0031 21.9 8.0 47 86-132 28-74 (81)
489 2lq4_p Lysophosphatidic acid r 40.8 7.7 0.00026 25.2 0.6 22 75-101 8-29 (80)
490 1hjb_A Ccaat/enhancer binding 40.6 33 0.0011 24.7 3.9 26 77-102 42-67 (87)
491 3mq9_A Bone marrow stromal ant 40.6 1.6E+02 0.0056 28.6 10.7 88 68-193 370-471 (471)
492 3q0x_A Centriole protein; cent 40.4 32 0.0011 29.9 4.6 32 71-102 164-195 (228)
493 2jun_A Midline-1; B-BOX, TRIM, 40.2 27 0.00092 25.7 3.7 30 1-30 4-35 (101)
494 3t97_C Nuclear pore glycoprote 40.1 20 0.00068 24.1 2.5 17 78-94 1-17 (64)
495 3no0_A DNA gyrase subunit A; D 39.7 2.1E+02 0.0071 25.6 21.6 196 312-518 25-245 (276)
496 1c1g_A Tropomyosin; contractIl 39.5 86 0.0029 27.5 7.9 28 75-102 10-37 (284)
497 2oqq_A Transcription factor HY 39.1 19 0.00064 21.5 2.0 9 86-94 32-40 (42)
498 1x79_B RAB GTPase binding effe 39.0 1.2E+02 0.0042 22.8 7.5 24 77-100 5-28 (112)
499 3etw_A Adhesin A; antiparallel 38.9 91 0.0031 23.8 6.3 60 65-134 3-62 (119)
500 1ic2_A Tropomyosin alpha chain 38.6 1E+02 0.0034 21.7 7.9 67 70-136 5-71 (81)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-49 Score=386.66 Aligned_cols=286 Identities=22% Similarity=0.361 Sum_probs=260.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.+.|++++|+|++++|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+..
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred -ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 299 -NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 299 -~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
.......+.+|...|.++.|++++. +++++.|++|++||+++++.+..+. +|...|.+++|+|++.+|++|+.
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEET
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-----CCCCceEEEEECCCCCEEEEEeC
Confidence 2345667789999999999998765 8999999999999999999888775 67789999999999999999999
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
||.|++||++++.....+.+|...|++++|+|++.+|++++.|+ |++||+++++.+..+........+.+++|+|+|.+
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999998 99999999888777765444567999999999999
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
|++|+.| +++|++ .....+..+.+| .+.|.+++|+|+|.+|++|+.||.|++|+
T Consensus 285 l~~g~~d~~i~vwd~----~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDA----LKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEc----ccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999998 999997 445566677775 78999999999999999999999999997
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.1e-49 Score=394.34 Aligned_cols=284 Identities=23% Similarity=0.446 Sum_probs=263.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.++|++++|+|++.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+.+.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~- 182 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF- 182 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.++..+.+|...|.+++|+|++++|++|+.|++|++||++++..+..+. +|...+.++.++|++.+|++|+.|
T Consensus 183 --~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 183 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-----GHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred --ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----CCCccEEEEEECCCCCEEEEEcCC
Confidence 7888899999999999999999999999999999999999999988876 667889999999999999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCC--------------------CCEEEEEeCCc-EEEEEcCCCccceEEe
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN--------------------GYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--------------------~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 437 (526)
|.|++||+++++....+.+|...|.+++|+|+ |.+|++|+.|+ |++||++++..+..+.
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 99999999999999999999999999999996 67899999998 9999999999988887
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
.+ ...|.+++|+|+|.+|++|+.| +++|++ .....+..+..| ...|++++|+|++.+|++|+.||.|++|
T Consensus 336 ~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~----~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 336 GH--DNWVRGVLFHSGGKFILSCADDKTLRVWDY----KNKRCMKTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp CC--SSCEEEEEECSSSSCEEEEETTTEEEEECC----TTSCCCEEEECC--SSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCceEEEEcCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 66 6789999999999999999998 999998 445566677665 7789999999999999999999999999
Q ss_pred eCC
Q 009763 516 GLP 518 (526)
Q Consensus 516 ~l~ 518 (526)
++.
T Consensus 408 ~~r 410 (410)
T 1vyh_C 408 ECR 410 (410)
T ss_dssp C--
T ss_pred eCC
Confidence 863
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=350.30 Aligned_cols=284 Identities=19% Similarity=0.354 Sum_probs=258.2
Q ss_pred ccCCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcE--EEEecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 219 HKTSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~----~~~l~t~~~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
..+|.+.|++++|+++ +.+|++|+.||+|+||++..++. ...+.+|...|.+++|++++.++++++.|++|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4579999999999974 56999999999999999877654 45788999999999999999999999999999999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
|+.++ +.+..+..|...+.+++|+|++++|++++.||.|++||+++++....+. .+...+.+++|+|++++|
T Consensus 108 d~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-----~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 108 DLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-----TRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp ETTTT---EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-----CSSSCEEEEEECTTSSEE
T ss_pred ECCCC---CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-----CCCceEEEEEECCCCCEE
Confidence 99886 6777788898999999999999999999999999999999998887776 445689999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
++|+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+++++....+..+ ...|.+++|+
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~s 257 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFC 257 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEEC
Confidence 9999999999999999999999999999999999999999999999998 999999999888777665 6789999999
Q ss_pred CCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 452 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
|++.+|++++.| ++||++ ....++..+..| ...|.+++|+|++++|++++.||.|++||++
T Consensus 258 p~~~~l~s~s~D~~v~iwd~----~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDV----GTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSSEEEEEETTSCEEEEET----TTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEeCCCcEEEEeC----CCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999998 999998 556778888775 7899999999999999999999999999975
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.7e-44 Score=350.43 Aligned_cols=288 Identities=22% Similarity=0.324 Sum_probs=259.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
...+|...|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|++...
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred C---ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc--CCcEE
Q 009763 298 G---NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLIL 372 (526)
Q Consensus 298 ~---~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l 372 (526)
. .......+.+|...|.++.|+|++..|++++.|++|++||+++++.+..+. +|...|.+++|+| ++.+|
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-----GHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECCCSSCCEE
T ss_pred ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-----CCCCCeEEEEEEeCCCCCEE
Confidence 2 123455667899999999999999999999999999999999999988886 6677899999988 57899
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
++|+.||.|++||+++++.+..+.+|...|++++|+|++.+|++++.|+ |++||++..+.+..+........+.+++|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 9999999999999999999999999999999999999999999999998 999999998877776655445678999999
Q ss_pred CCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 452 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
|+|.+|++|+.| +++|++ .....+..+.+| .+.|++++|+|+|++|++|+.||.|++|+
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~----~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDV----LKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEEETTSCEEEEET----TTCSEEEEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEEC----CCCceEEEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999988 999997 345566667665 78999999999999999999999999996
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.3e-43 Score=340.43 Aligned_cols=286 Identities=20% Similarity=0.384 Sum_probs=250.9
Q ss_pred ccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCC-----CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 219 HKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPS-----GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
..+|.+.|++++|+|++ ++|++|+.||+|++|++.. +..+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 56899999999999965 8999999999999999753 34577889999999999999999999999999999999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC----
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---- 368 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---- 368 (526)
|+.++ +++..+.+|...|.+++|+|++.+|++++.|++|++||++.. .+..+. +|...+.++.|+|.
T Consensus 93 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~-----~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 93 DVATG---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLL-----GHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp ETTTT---EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEEC-----CCSSCEEEEEECCC----
T ss_pred ECCCC---CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEe-----ccCCcEEEEEEccCCCCC
Confidence 99887 778888999999999999999999999999999999999754 444443 67788999999984
Q ss_pred --CcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCe
Q 009763 369 --GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445 (526)
Q Consensus 369 --~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 445 (526)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|+|.+|++++.|+ |++||+++++.+..+.. ...+
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v 240 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA---QDEV 240 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---CSCE
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCcE
Confidence 45899999999999999999999999999999999999999999999999998 99999999998888775 3579
Q ss_pred eEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCC------CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 446 NSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL------SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 446 ~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.+++|+|++.+|++++.+ +++|+++. ...+..+..+ .+...+.+++|+|||++|++|+.||.|++|++.
T Consensus 241 ~~~~~sp~~~~la~~~~~~i~v~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 241 FSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEEETT----EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCc----CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 999999999999999888 99999843 2333333211 135678999999999999999999999999986
Q ss_pred CC
Q 009763 519 GN 520 (526)
Q Consensus 519 ~~ 520 (526)
+.
T Consensus 317 t~ 318 (319)
T 3frx_A 317 TA 318 (319)
T ss_dssp EC
T ss_pred ec
Confidence 53
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.7e-44 Score=356.03 Aligned_cols=300 Identities=19% Similarity=0.364 Sum_probs=260.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
...+|.+.|++++|+|++++|++|+.||+|++||..+++....+.+|...|.+++|+|++++|++|+.|+.|++||+...
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred C----ceeeeEecccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcE
Q 009763 298 G----NYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLI 371 (526)
Q Consensus 298 ~----~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 371 (526)
. .......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+......+|...+.+++|++ ++.+
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence 1 22345567899999999999996 4579999999999999999999888775443457888999999987 8899
Q ss_pred EEEEeCCCcEEEEECC-CCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC-----CCC
Q 009763 372 LGTGTSEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-----ETP 444 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----~~~ 444 (526)
|++|+.||.|++||++ .+..+..+.+|.+.|++++|+|++.+|++++.|+ |++||+++++.+..+..+.. ...
T Consensus 221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 9999999999999998 4577888999999999999999999999999998 99999999988877765321 234
Q ss_pred eeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecC--CCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 445 TNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD--LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+.+++|+|+|.+|++|+.+ +++|+. ........+.. ..|.+.|++++|+|+|++|++|+.||.|++|++.+.
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~----~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDT----LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEET----TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEEC----CCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 8999999999999999988 999997 33334444321 235889999999999999999999999999999876
Q ss_pred C
Q 009763 521 D 521 (526)
Q Consensus 521 ~ 521 (526)
.
T Consensus 377 ~ 377 (380)
T 3iz6_a 377 R 377 (380)
T ss_dssp S
T ss_pred c
Confidence 4
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=341.70 Aligned_cols=298 Identities=19% Similarity=0.317 Sum_probs=243.5
Q ss_pred cCCCC-CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE---EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 220 KTSKP-GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 220 ~~~~~-~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
.+|.. .|.+++|+|+|++||+|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++|++|++.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 45666 89999999999999999999999999998775432 336899999999999999999999999999999987
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
.. ...++..+.+|...|.+++|+|++++|++++.|++|++||+.++.....+.. ...|...|.+++|+|++.+|++|
T Consensus 92 ~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 92 QD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV--LNSHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp CC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE--ECCCCSCEEEEEECSSSSCEEEE
T ss_pred CC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE--ecCcCCCeEEEEECCCCCEEEEE
Confidence 64 3356778899999999999999999999999999999999987643222211 12677889999999999999999
Q ss_pred eCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc---------------ceEEe
Q 009763 376 TSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---------------FRSFE 437 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~---------------~~~~~ 437 (526)
+.|+.|++||.+++. ....+.+|...|.+++|+|+|.+|++++.|+ |++||...... +..+.
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence 999999999998875 4567889999999999999999999999998 99999743221 11222
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCccee----ee-eecCCCCCcceEEEEEcCCC-CEEEEEeCC
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC----IK-TFPDLSGTGKATCVKFGPDA-KYIAVGSMD 509 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~----~~-~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d 509 (526)
. .+...|.+++|+|++.+|++++.| +++|+.+........ .. .... |...|++++|+|++ .+|++|+.|
T Consensus 249 ~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 249 G-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA--HSQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp S-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS--SSSCEEEEEECSSSTTEEEEEETT
T ss_pred C-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc--ccCcEeEeEEeCCCceEEEEcCCC
Confidence 2 136789999999999999999998 999998653322211 11 1223 47899999999987 599999999
Q ss_pred CcEEEeeCCCCCCC
Q 009763 510 RNLRVFGLPGNDAP 523 (526)
Q Consensus 510 g~v~iw~l~~~~~~ 523 (526)
|.|++|++..++.+
T Consensus 326 g~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 326 GEVAFWKYQRPEGL 339 (345)
T ss_dssp SCEEEEEECC----
T ss_pred CcEEEEEecCCCCc
Confidence 99999999887654
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.1e-42 Score=331.19 Aligned_cols=285 Identities=19% Similarity=0.331 Sum_probs=251.6
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.+.|++++|+|++++|++|+.||.|++||+.++..+..+.+|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~- 87 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG- 87 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC-
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE-EEeecCCCCCCCCCeeEEEEcc-CCcEEEEEe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~ 376 (526)
+++..+.+|...|++++|+|++++|++|+.||+|++||++++... ..+. +|...|.+++|+| ++.+|++|+
T Consensus 88 --~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-----CCCSCEEEEEECTTCTTEEEEEE
T ss_pred --cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-----ccCCcEEEEEECCCCCCEEEEEe
Confidence 677888999999999999999999999999999999999987444 3333 6778999999999 689999999
Q ss_pred CCCcEEEEECCCCceeeEec-CCCCCeEEEEECC--CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 377 SEALVKIWDVKSQANVAKFD-GHVGAVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
.||.|++||++++.....+. ++...+..+.|+| ++.+|++++.|+ |++||+++++++..+..+ ...|.+++|+|
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~~~~p 238 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHP 238 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECS
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEEEECC
Confidence 99999999998887666654 4567899999987 678999999998 999999999998888876 67899999999
Q ss_pred CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC--EEEEEeCCCcEEEeeCCCC
Q 009763 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK--YIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~v~iw~l~~~ 520 (526)
++.+|++|+.| +++|+. ........+..+ ...+.+++|+|++. ++++|+.| .+.+|++...
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNS----STYKVEKTLNVG--LERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp SSSEEEEEETTSCEEEEET----TTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred CCCEEEEEcCCCeEEEEEC----CCCceeeeccCC--CccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 99999999998 999997 556777777765 67899999999875 57777655 5778888653
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-41 Score=327.11 Aligned_cols=286 Identities=21% Similarity=0.426 Sum_probs=254.9
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|...|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~- 97 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 97 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.++..+.+|...|.++.|+|++++|++++.||.|++||+++++.+..+. .|...+.+++|+|++.+|++|+.|
T Consensus 98 --~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 98 --KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred --cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcEEEEEEcCCCCEEEEEeCC
Confidence 6778888999999999999999999999999999999999998887775 566789999999999999999999
Q ss_pred CcEEEEECCCCceeeEec-CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEE-cCCCC
Q 009763 379 ALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF-DHSGS 455 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~-s~~~~ 455 (526)
|.|++||+++++.+..+. .+...+..++|+|++.+|++++.|+ |++||+++++.+..+..+..........+ .+++.
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 999999999998877764 4566899999999999999999998 99999999998888876643333333334 46789
Q ss_pred EEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEeeCC
Q 009763 456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS--MDRNLRVFGLP 518 (526)
Q Consensus 456 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~l~ 518 (526)
+|++|+.| +++|++ .....+..+.+| ...|.+++|+|++.+|++++ .||.|++|+.+
T Consensus 251 ~l~sg~~dg~i~vwd~----~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNL----QTKEIVQKLQGH--TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECCTTSCEEEEET----TTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEECCCCEEEEEEC----CCchhhhhhhcc--CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999988 999998 455667777775 78899999999999999987 69999999975
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.1e-42 Score=335.48 Aligned_cols=291 Identities=18% Similarity=0.325 Sum_probs=243.3
Q ss_pred cccCCCCCeEEEEe-----cC-CCCEEEEEeCCCcEEEEeCCC-------CcEEEEecccccceeEEEEecCCCEEEEEe
Q 009763 218 LHKTSKPGIVSLDI-----HY-SKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 284 (526)
Q Consensus 218 ~~~~~~~~I~~~~~-----s~-~~~~l~t~~~dg~v~vwd~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 284 (526)
...+|.+.|++++| ++ ++++|++|+.||+|++||+.. +.....+.+|...|.+++|+|++.+|++|+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 45689999999999 76 899999999999999999864 345678899999999999999999999999
Q ss_pred CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE
Q 009763 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 285 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (526)
.|++|++||+.++ ..+..+.+|...|.+++|+|++++|++++.|++|++||+...... ... ....|...+.+++
T Consensus 96 ~D~~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~--~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 96 WDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSA--EKENHSDWVSCVR 169 (343)
T ss_dssp TTSEEEEEETTSS---CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECC--TTTSCSSCEEEEE
T ss_pred CCCcEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eee--cccCCCceeeeee
Confidence 9999999999886 677788899999999999999999999999999999999854332 221 1336778899999
Q ss_pred EccCC----------cEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCc-c
Q 009763 365 FHPDG----------LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-N 432 (526)
Q Consensus 365 ~~~~~----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~-~ 432 (526)
|+|++ .+|++++.||.|++||. .......+.+|...|.+++|+|+|.+|++++.|+ |++||++... .
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 99987 79999999999999994 5667778889999999999999999999999998 9999995443 3
Q ss_pred ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecC---------CCCCcceEEEEEcCCCCE
Q 009763 433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPD---------LSGTGKATCVKFGPDAKY 502 (526)
Q Consensus 433 ~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~ 502 (526)
...+.. ...|.+++|+|++.++++++.+ +++|++....... +..+.. ..|...|.+++|+|+|++
T Consensus 249 ~~~~~~---~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 249 QREFDA---GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP--VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp SEEEEC---SSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS--EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred ceeecC---CCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc--eEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 344332 4579999999999999888776 9999985432211 112221 124678999999999999
Q ss_pred EEEEeCCCcEEEeeCCCC
Q 009763 503 IAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 503 l~s~~~dg~v~iw~l~~~ 520 (526)
|++|+.||.|++|++..+
T Consensus 324 l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 324 LFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEETTSEEEEEEEEEE
T ss_pred EEEecCCceEEEEEEEcc
Confidence 999999999999998653
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.7e-42 Score=333.77 Aligned_cols=288 Identities=14% Similarity=0.160 Sum_probs=232.6
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-----------CcEEEEecccccceeEEEEecCCCEEEEEeCCCc
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-----------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~-----------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 288 (526)
..|...|.+++|+|+|.+|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 34567799999999999999887 77888886311 11111222356789999999985 6889999999
Q ss_pred EEEEeCCCCCcee-eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 289 VRVWQGSEDGNYD-CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 289 i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
|+|||+.++.... ....+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+. +|...|.+++|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-----~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-----AHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECS
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CcCCceEEEEecC
Confidence 9999998864322 223445899999999999999999999999999999999999988875 6788999999999
Q ss_pred CC-cEEEEEeCCCcEEEEECCCCceeeEec--CCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEEecCCCC
Q 009763 368 DG-LILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 368 ~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 442 (526)
++ .+|++|+.||.|++||+++++....+. .+...+.+++|+|+ +++|++|+.|+ |++||+++++.+..+..+ .
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h--~ 257 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH--S 257 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC--S
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC--C
Confidence 87 588999999999999999998887774 35567999999994 67889999998 999999999999988876 6
Q ss_pred CCeeEEEEcCCC-CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEeeCC
Q 009763 443 TPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 443 ~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~l~ 518 (526)
..|++++|+|++ .+|++|+.| ++||++. ..+. ..+.+| .+.|++++|+|+++ +|++|+.||.|++|+++
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~----~~~~-~~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSS----LSEL-FRSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECTT----CCEE-EEECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEEccCCCeEEEEEeCCCeEEEEECC----CCcE-EEEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 789999999998 578999988 9999873 3333 345554 88999999999886 57789999999999998
Q ss_pred CCCCC
Q 009763 519 GNDAP 523 (526)
Q Consensus 519 ~~~~~ 523 (526)
....+
T Consensus 331 ~~~~~ 335 (344)
T 4gqb_B 331 TEPLP 335 (344)
T ss_dssp C----
T ss_pred CCCCC
Confidence 76544
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-41 Score=335.99 Aligned_cols=282 Identities=22% Similarity=0.400 Sum_probs=244.3
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccc------------------ceeEEEEecCCCEEEE
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK------------------KVTSVKFVTEGDLFLT 282 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~------------------~V~~l~~~~~~~~l~s 282 (526)
.|.+.|++++|+|+|++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5889999999999999999987 78999999999998888876542 3899999999999999
Q ss_pred EeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
|+.||+|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.+
T Consensus 141 ~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~v~~ 211 (393)
T 1erj_A 141 GAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS------IEDGVTT 211 (393)
T ss_dssp EETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEE
T ss_pred EcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE------cCCCcEE
Confidence 999999999999886 6778889999999999999999999999999999999999998877764 2357999
Q ss_pred EEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEe-------cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc-
Q 009763 363 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKF-------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN- 432 (526)
Q Consensus 363 ~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~- 432 (526)
++|+| ++.+|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|.+|++++.|+ |++||+++...
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 99999 8999999999999999999999887766 56889999999999999999999998 99999986432
Q ss_pred -----------ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-
Q 009763 433 -----------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP- 498 (526)
Q Consensus 433 -----------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 498 (526)
...+.. |...|.+++|+|++.+|++|+.| +++|+. .....+..+.+| ...|.+++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~----~~~~~~~~l~~h--~~~v~~v~~~~~ 363 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDK----KSGNPLLMLQGH--RNSVISVAVANG 363 (393)
T ss_dssp ---------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEECSS
T ss_pred ccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEEC----CCCeEEEEECCC--CCCEEEEEecCC
Confidence 233333 36789999999999999999998 999997 445666777775 77899999986
Q ss_pred -----CCCEEEEEeCCCcEEEeeCCCC
Q 009763 499 -----DAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 499 -----~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
++++|++|+.||.|++|++...
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCcCCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998654
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-41 Score=332.05 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=233.7
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeC------CCcEEEEeCCCCcEE----EEecccccceeEEEEecCCCEEEEEeCCCcE
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGV------DTNAVLFDRPSGQIV----TTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~------dg~v~vwd~~~~~~~----~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 289 (526)
..|...|++++|+|||++||+|+. ||.|++|+..++... ....+|...|.+++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 357889999999999999999997 778999998776542 33456889999999999986 5667889999
Q ss_pred EEEeCCCCCce-eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC
Q 009763 290 RVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (526)
Q Consensus 290 ~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 368 (526)
+|||+.++... .......+|...|++++|+|++++|++++.||.|++||+++++.+..+. +|...|.+++|+++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-----AHSSEVNCVAACPG 192 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTT
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEccC
Confidence 99999875321 1122345799999999999999999999999999999999999888875 67789999999998
Q ss_pred C-cEEEEEeCCCcEEEEECCCCceeeEec--CCCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCC
Q 009763 369 G-LILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 369 ~-~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
+ .++++++.||.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.++ |++||+++++....+..+ ..
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~--~~ 270 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH--SQ 270 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC--SS
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc--ce
Confidence 7 588999999999999999988776553 46678999999997 57889999998 999999999998888766 67
Q ss_pred CeeEEEEcCCC-CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEeeCCC
Q 009763 444 PTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 444 ~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~l~~ 519 (526)
.|++++|+|++ ++|++|+.| ++||++ ...+.+..+ . |.+.|++++|+| ++.+|++|+.||.|++|+++.
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~----~~~~~~~~~-~--H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDA----DFSEVFRDL-S--HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECT----TSCEEEEEC-C--CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEEC----CCCcEeEEC-C--CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 89999999987 678899988 999997 334444443 4 488999999998 899999999999999999976
Q ss_pred CC
Q 009763 520 ND 521 (526)
Q Consensus 520 ~~ 521 (526)
..
T Consensus 344 ~~ 345 (357)
T 4g56_B 344 EG 345 (357)
T ss_dssp --
T ss_pred CC
Confidence 53
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-40 Score=322.57 Aligned_cols=288 Identities=22% Similarity=0.378 Sum_probs=228.9
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--cEEEEe-cc-cccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTL-SG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~--~~~~~~-~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 294 (526)
..+|.+.|++++|+++ +|++|+.||.|++||+..+ .....+ .+ |...|.+++|+|++++|++|+.|++|++||+
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 4578999999999987 9999999999999999875 445556 44 9999999999999999999999999999998
Q ss_pred CCCC----ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC----eEEEEeecCCCCCCCCCeeEEEEc
Q 009763 295 SEDG----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG----ICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 295 ~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
.... .......+.+|...|.+++|+|++++|++|+.|++|++||+... +.+..+. +|...|.+++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-----~h~~~v~~v~~~ 162 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-----EHSQDVKHVIWH 162 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-----CCSSCEEEEEEC
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-----cCCCceEEEEEC
Confidence 5421 23567778899999999999999999999999999999999532 3444443 677899999999
Q ss_pred cCCcEEEEEeCCCcEEEEECCCC--ceeeEecCCCCCeEEEEECCC--CCEEEEEeCCc-EEEEEcCCCc--------cc
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSEN--GYYLATAAHDG-VKLWDLRKLK--------NF 433 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~-i~iwd~~~~~--------~~ 433 (526)
|++.+|++|+.|+.|++||.+++ +++..+.+|.+.|.+++|+|+ +.+|++++.|+ |++||++... ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999999876 677889999999999999998 77999999998 9999997642 22
Q ss_pred eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeee-cCCCCCc-ceEEEEEcC--CCCEEEEEe
Q 009763 434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTG-KATCVKFGP--DAKYIAVGS 507 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~s~--~~~~l~s~~ 507 (526)
..+.. .+...|.+++|++++ +|++++.| ++||+... ..+...... ..| .. .|.+++|+| ++++|++|+
T Consensus 243 ~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 243 AILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD--GEWKVFAKRALCH--GVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp EECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET--TEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEEE
T ss_pred eeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC--CceEEEecccccc--ccceEEEEEEecCCCceEEEEec
Confidence 22221 246789999999765 77888887 99999742 222333332 333 54 899999999 789999999
Q ss_pred CCCcEEEeeCCC
Q 009763 508 MDRNLRVFGLPG 519 (526)
Q Consensus 508 ~dg~v~iw~l~~ 519 (526)
.||.|++|++..
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999864
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-40 Score=350.62 Aligned_cols=296 Identities=21% Similarity=0.333 Sum_probs=245.9
Q ss_pred ccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
..+|...|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 467899999999999987 6999999999999999999999999999999999999999999999999999999999876
Q ss_pred CceeeeEecc-------cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC-------------------
Q 009763 298 GNYDCKHTLK-------DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA------------------- 351 (526)
Q Consensus 298 ~~~~~~~~~~-------~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------- 351 (526)
.+...+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+...
T Consensus 223 ---~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 223 ---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp ---CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred ---cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence 4555553 79999999999999999999999999999999998876655311
Q ss_pred -------------------CCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEe-c---------------
Q 009763 352 -------------------GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-D--------------- 396 (526)
Q Consensus 352 -------------------~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~--------------- 396 (526)
...+|...|.+++|+|+|.+|++++.|+.|++||+.++.....+ .
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 01367889999999999999999999999999999876432221 0
Q ss_pred ------------------------------------------------------------------CCCCCeEEEEECCC
Q 009763 397 ------------------------------------------------------------------GHVGAVTAISFSEN 410 (526)
Q Consensus 397 ------------------------------------------------------------------~~~~~i~~l~~s~~ 410 (526)
.|...+.+++|+|+
T Consensus 380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd 459 (611)
T 1nr0_A 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 459 (611)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence 01235778999999
Q ss_pred CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCC
Q 009763 411 GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG 487 (526)
Q Consensus 411 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~ 487 (526)
|++|++|+.|+ |++||+.......... ..+...|.+++|+|+|++|++++.| +++|++.. ............|
T Consensus 460 g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~---~~~~~~~~~~~~H 535 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN---NFELAHTNSWTFH 535 (611)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG---TTEESCCCCCCCC
T ss_pred CCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC---CCceeeeeeeeec
Confidence 99999999998 9999998764321111 2346789999999999999999998 99999742 1333332111125
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
...|.+++|+|||++|++|+.||.|++|++..+.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 8899999999999999999999999999998654
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-39 Score=317.65 Aligned_cols=289 Identities=21% Similarity=0.347 Sum_probs=248.7
Q ss_pred ccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCC-----cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 219 HKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG-----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
.++|.+.|++|+|+|+ +++|++|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 5689999999999997 689999999999999998764 3567889999999999999999999999999999999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC--c
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--L 370 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~ 370 (526)
+.... ........+...+..+.+++++++|++++.|+.+++||+......... ..+|...+.+++|++++ .
T Consensus 114 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 114 DLTTG---TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ----DESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp ETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC----SSSCSSCEEEEEECSCSSSC
T ss_pred eeccc---ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE----eccccCcccceEEccCCCCc
Confidence 99876 555666678888999999999999999999999999999877654443 23677889999999854 6
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEE
Q 009763 371 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 449 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~ 449 (526)
++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++.+|++++.|+ |++||+++.+.+..+.. ...+..+.
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~ 263 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALC 263 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceEEeee
Confidence 788999999999999999999999999999999999999999999999998 99999999998888776 45799999
Q ss_pred EcCCCCEEEEEeCC-eEEEEEecccCcceeeeeec-------CCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 450 FDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFP-------DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 450 ~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|+|++.+++++... +++|++.. ...+..+. ...|...|++++|+|+|++|++|+.||.|+||++.++.
T Consensus 264 ~~~~~~~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 264 FSPNRYWLCAATGPSIKIWDLEG----KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECSSSSEEEEEETTEEEEEETTT----TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCCceeeccCCCEEEEEECCC----CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999888777766 99999732 33333222 12357889999999999999999999999999998764
No 17
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-39 Score=350.58 Aligned_cols=289 Identities=22% Similarity=0.379 Sum_probs=249.0
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCC-----cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
...+|.+.|++++|++++ ++|++|+.||+|++|++.+. .....+.+|...|.+++|+|++++|++|+.||+|+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 356899999999999864 79999999999999998753 456788999999999999999999999999999999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC--
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-- 369 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 369 (526)
||+.++ .....+.+|...|.+++|+|++++|++++.|++|++||+.......... ...+|...|.+++|+|++
T Consensus 457 wd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 457 WDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSS
T ss_pred EECCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCc
Confidence 999886 6778888999999999999999999999999999999987654433222 134678889999999986
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEE
Q 009763 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 448 (526)
..+++|+.||.|++||+++++....+.+|.+.|++++|+|+|.+|++++.|+ |++||+++++.+..+.. ...+.++
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~ 608 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHAL 608 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCEEEE
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcEEEE
Confidence 6899999999999999999999999999999999999999999999999998 99999999887766544 4679999
Q ss_pred EEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCC-----------------CCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 449 DFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL-----------------SGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
+|+|++.+|++++.+ ++||++. ....+..+..+ .+...+++++|+|+|++|++|+.||
T Consensus 609 ~~sp~~~~l~~~~~~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 609 CFSPNRYWLCAATEHGIKIWDLE----SKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EECSSSSEEEEEETTEEEEEETT----TTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEcCCCcEEEEEcCCCEEEEECC----CCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 999999999998887 9999983 33444333221 0112478999999999999999999
Q ss_pred cEEEeeCC
Q 009763 511 NLRVFGLP 518 (526)
Q Consensus 511 ~v~iw~l~ 518 (526)
.|++|++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999985
No 18
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-39 Score=321.18 Aligned_cols=297 Identities=15% Similarity=0.179 Sum_probs=250.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
++..|..+|++++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 345688899999999999999999999999999999887 888999999999999999999999999999999999997
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
++. ......+..|...|.+++|+|++++|++++.||.|++||++.+......... ...|...+.+++|+|++.+|++|
T Consensus 83 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 83 GRT-WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp TTE-EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCe-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEE
Confidence 742 2334445679999999999999999999999999999999887632211111 23567899999999999999999
Q ss_pred eCCCcEEEEECC------------------CCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEE
Q 009763 376 TSEALVKIWDVK------------------SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 376 ~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 436 (526)
+.||.|++||++ .++.+..+..|...|.+++|+|++.+|++++.|+ |++||+++++.+..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 999999999954 6778888888999999999999999999999998 999999999998888
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceee------------------------------------
Q 009763 437 ESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI------------------------------------ 479 (526)
Q Consensus 437 ~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~------------------------------------ 479 (526)
..+ ...+.+++|+|++.+|++|... +++|++......|...
T Consensus 241 ~~~--~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 241 ASE--TLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp ECS--SCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred ccC--CCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 766 6789999999999999988544 9999996521222221
Q ss_pred eeecCCCCCcceEEEEEc-CCC---CEEEEEeCCCcEEEeeCCC
Q 009763 480 KTFPDLSGTGKATCVKFG-PDA---KYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 480 ~~~~~~~~~~~v~~~~~s-~~~---~~l~s~~~dg~v~iw~l~~ 519 (526)
..+. ..|...|++++|. ++| .+|++|+.||.|++|++..
T Consensus 319 ~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 319 AGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 1121 1357899999976 676 9999999999999999865
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-39 Score=343.18 Aligned_cols=292 Identities=18% Similarity=0.248 Sum_probs=247.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
...+++.+.+++|+|+|++|++++ ++.|++|++.+++....+.+|...|++++|+|+|++|++|+.||+|+|||+.++.
T Consensus 14 ~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 14 PRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 345577899999999999999988 5799999999999999999999999999999999999999999999999986532
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc-EEE
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILG 373 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 373 (526)
. .....+.+|.+.|.+++|+|++++|++++.+ +.|++||. +.....+ .+|...|.+++|+|++. .|+
T Consensus 93 ~-~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l-----~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 93 H-ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL-----TGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp C-CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC-----CCCSSCEEEEEECSSSSCEEE
T ss_pred c-eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCccee-----cCCCCCceEEEECCCCCeEEE
Confidence 1 3455678899999999999999999999875 47888884 4333333 37888999999999986 699
Q ss_pred EEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecC-----CCCCCeeE
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----DSETPTNS 447 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----~~~~~i~~ 447 (526)
+|+.|+.|++||..+++....+.+|...|.+++|+|+|.+|++++.|+ |++||+.+++....+... .|...|.+
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~ 244 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEE
Confidence 999999999999999999999999999999999999999999999998 999999998887766321 34779999
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEEecccCc---------------------------------------ceeeeeecCCC
Q 009763 448 VDFDHSGSYLAVASAD--IRVYQVASVKAD---------------------------------------WNCIKTFPDLS 486 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d--i~v~~~~~~~~~---------------------------------------~~~~~~~~~~~ 486 (526)
++|+|+|++|++++.| +++|++...... ......+.+
T Consensus 245 v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-- 322 (611)
T 1nr0_A 245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-- 322 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC--
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC--
Confidence 9999999999999998 999997432110 011122333
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 487 GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 487 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|...|++++|+|+|++|++++.||.|++||+..+.
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 47889999999999999999999999999997653
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-39 Score=315.21 Aligned_cols=289 Identities=19% Similarity=0.302 Sum_probs=251.4
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~- 106 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG- 106 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCC------CCCCCC--CeeEEEE
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAG------TDGRPE--GYTSAAF 365 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~------~~~~~~--~v~~~~~ 365 (526)
+.+..+. |...|.+++|+|+++++++++.+ |.|.+||+..+.....+.... ...+.. .+.+++|
T Consensus 107 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 107 --QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp --CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred --cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 5556655 88899999999999999999999 999999987654211111000 002223 8999999
Q ss_pred ccCCcEEEEEeCCCcEEEEECCC-CceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCC
Q 009763 366 HPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 366 ~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
+|++.+|++++.||.|++||+++ +..+..+..|...|.+++|+|++.+|++++.++ |++||+++++....+.. ..
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~ 260 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET---DC 260 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SS
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC---CC
Confidence 99999999999999999999998 788888999999999999999999999999998 99999999998888873 57
Q ss_pred CeeEEEEcCCCCEEEEEeCC----------------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 444 PTNSVDFDHSGSYLAVASAD----------------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d----------------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
.+..+.|+|++.++++++.+ +++|+. .....+..+..| ...|++++|+|++++|++++
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~----~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK----IFEEEIGRVQGH--FGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEET----TTCCEEEEEECC--SSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec----CCCcchhheecc--cCcEEEEEECCCCCEEEEEc
Confidence 89999999999999998864 456665 345566666665 78999999999999999999
Q ss_pred CCCcEEEeeCCCC
Q 009763 508 MDRNLRVFGLPGN 520 (526)
Q Consensus 508 ~dg~v~iw~l~~~ 520 (526)
.||.|++|++..+
T Consensus 335 ~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 335 EDGFIRLHHFEKS 347 (369)
T ss_dssp TTSEEEEEEECHH
T ss_pred CCCeEEEEECccc
Confidence 9999999999753
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-39 Score=323.10 Aligned_cols=293 Identities=18% Similarity=0.297 Sum_probs=248.9
Q ss_pred cCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeC----CCCc------EEEEecc----------cccceeEEEEecCCC
Q 009763 220 KTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDR----PSGQ------IVTTLSG----------HSKKVTSVKFVTEGD 278 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~----~~~~------~~~~~~~----------h~~~V~~l~~~~~~~ 278 (526)
..|.+.|++++|+|+++ +|++|+.||.|++|++ .+++ ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34568999999999999 9999999999999999 8887 4555554 688999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC-----
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT----- 353 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----- 353 (526)
+|++|+.||.|++||... ..+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKTG----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp EEEEEETTSCEEEEETTS----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred EEEEEeCCCeEEEEeCCC----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 999999999999999433 57777889999999999999999999999999999999998887665542211
Q ss_pred ----------------------------------------------CCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC
Q 009763 354 ----------------------------------------------DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK 387 (526)
Q Consensus 354 ----------------------------------------------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 387 (526)
..|...+.+++|+|++.+|++++.||.|++||++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 1466789999999999999999999999999999
Q ss_pred CCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--e
Q 009763 388 SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I 464 (526)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i 464 (526)
+++.+..+..|...|.+++|+|++ ++++++.++ |++||+++++.+..+..+ ...+.+++|+|++.+|++++.+ +
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcCCCCEEEEEECCCeE
Confidence 999999999999999999999999 999999998 999999999988888765 6789999999999999999988 9
Q ss_pred EEEEEecccC----------------cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 465 RVYQVASVKA----------------DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 465 ~v~~~~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
++|++..... ....+..+..+.....|++++|+|++++|++++.||.|++|++++
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 9999854320 011566676652112899999999999999999999999999864
No 22
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-39 Score=320.84 Aligned_cols=294 Identities=11% Similarity=0.215 Sum_probs=249.5
Q ss_pred eccccCCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecc-----cccceeEEEEecC----CCEEEE
Q 009763 216 HPLHKTSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSG-----HSKKVTSVKFVTE----GDLFLT 282 (526)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~----~~~l~t~~~dg~v~vwd~~~~~~~~~~~~-----h~~~V~~l~~~~~----~~~l~s 282 (526)
..+..+|...|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +.+|++
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 3456789999999999984 45667777788999999998877766654 5578999999998 679999
Q ss_pred EeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCee
Q 009763 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 361 (526)
|+.||.|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+..+.. ...|...|.
T Consensus 91 ~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~v~ 165 (366)
T 3k26_A 91 AGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVL 165 (366)
T ss_dssp EETTCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS--TTSCSSCEE
T ss_pred ecCCCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc--cccccCcee
Confidence 999999999999876 67777889999999999999 899999999999999999999988887732 136778999
Q ss_pred EEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec----------------------------CCCCCeEEEEECCCCCE
Q 009763 362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD----------------------------GHVGAVTAISFSENGYY 413 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i~~l~~s~~~~~ 413 (526)
+++|+|++.+|++++.||.|++||+++++....+. .|...|.+++|+ +.+
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 99999999999999999999999999876544333 388999999998 779
Q ss_pred EEEEeCCc-EEEEEcCCCcc--------------ceEEecCCCCCCeeEEEEcCC--CCEEEEEeCC--eEEEEEecccC
Q 009763 414 LATAAHDG-VKLWDLRKLKN--------------FRSFESSDSETPTNSVDFDHS--GSYLAVASAD--IRVYQVASVKA 474 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~~~~--------------~~~~~~~~~~~~i~~i~~s~~--~~~l~~~~~d--i~v~~~~~~~~ 474 (526)
|++++.++ |++||+++... +..+..+ ...+.+++|+|+ +.+|++|+.+ +++|++.....
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99999998 99999988754 4444444 668999999999 9999999988 99999865444
Q ss_pred cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 475 DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.......+..|.+...|++++|+|++++|++++.||.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 34455677777667899999999999999999999999999985
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-38 Score=332.60 Aligned_cols=276 Identities=25% Similarity=0.456 Sum_probs=248.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
...|...|.+++|+|++++|++++.||.|++||.. +..+..+.+|...|.+++|+|++++|++|+.||.|++||...
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-- 375 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-- 375 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--
Confidence 45788999999999999999999999999999976 456678889999999999999999999999999999999654
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+. +|...|.+++|+|++.+|++++.|
T Consensus 376 --~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 376 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----GHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred --CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-----CCCCCeEEEEECCCCCEEEEEcCC
Confidence 567788899999999999999999999999999999996 455666654 567899999999999999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
+.|++||. +++.+..+.+|...|++++|+|++.+|++++.|+ |++||. +++.+..+..+ ...|++++|+|+|++|
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h--~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTI 523 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEEEECTTSSCE
T ss_pred CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC--CCCEEEEEEcCCCCEE
Confidence 99999996 5678888899999999999999999999999998 999995 57777777765 6789999999999999
Q ss_pred EEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEee
Q 009763 458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 458 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
++++.| +++|+. ....+..+.+| .+.|++++|+|||++|++++.||.|++||
T Consensus 524 ~s~~~dg~v~lwd~-----~~~~~~~~~~h--~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 524 ASASDDKTVKLWNR-----NGQLLQTLTGH--SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSEEEEECT-----TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECcCEEEEEeC-----CCCEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999998 999984 34567777776 78999999999999999999999999997
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.5e-39 Score=321.63 Aligned_cols=297 Identities=17% Similarity=0.200 Sum_probs=250.8
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc------EEEEecccccceeEEEEecC----C---CEEEEE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFVTE----G---DLFLTG 283 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~------~~~~~~~h~~~V~~l~~~~~----~---~~l~s~ 283 (526)
....+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + ++|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 35678999999999998 899999999999999999887 78888899999999999999 9 999999
Q ss_pred eCCCcEEEEeCCCCCc--eeeeEecccC-----ccceEEEEEe----cCCCE-EEEEECCCeEEEEeCCC------CeEE
Q 009763 284 SADKTVRVWQGSEDGN--YDCKHTLKDH-----TAEVQAVTVH----ATNKY-FVTASLDNTWCFYDLSS------GICL 345 (526)
Q Consensus 284 s~dg~i~iwd~~~~~~--~~~~~~~~~h-----~~~v~~l~~~----p~~~~-l~s~s~dg~i~iwd~~~------~~~~ 345 (526)
+.||.|++||+.++.. ......+..| ...|.+++|+ |++++ |++++.||.|++||+.+ +..+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999987531 0116667777 5899999999 99999 99999999999999988 5544
Q ss_pred E-----Eeec--CCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecC---C---CCCeEEEEECCCCC
Q 009763 346 T-----QVSD--AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---H---VGAVTAISFSENGY 412 (526)
Q Consensus 346 ~-----~~~~--~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~l~~s~~~~ 412 (526)
. .+.. .....|...+.+++|+|++ +|++|+.||.|++||+++++.+..+.. | ...|.+++|+|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 3 4321 0012456789999999999 999999999999999999999999998 8 89999999999999
Q ss_pred EEEEEeCC---c-EEEEEcCCCccceEEecCC-----------CCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCc
Q 009763 413 YLATAAHD---G-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 475 (526)
Q Consensus 413 ~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 475 (526)
+|++++.+ + |++||+++++.+..+.... +...+.+++|+|++.+|++++.| +++|++ ..
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~ 322 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV----KT 322 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET----TT
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc----CC
Confidence 99999998 7 9999999999888887611 36789999999999999999988 999998 44
Q ss_pred ceeeeeec------CC-------------CCCcceEEEEEcCCC----------CEEEEEeCCCcEEEeeCCCC
Q 009763 476 WNCIKTFP------DL-------------SGTGKATCVKFGPDA----------KYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 476 ~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~l~s~~~dg~v~iw~l~~~ 520 (526)
...+..+. .| .|...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 55666665 32 116789999999998 79999999999999999765
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-38 Score=316.60 Aligned_cols=287 Identities=16% Similarity=0.213 Sum_probs=237.7
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcEEEEec--ccccceeEEEEec-CCCEEEEEeCCCcEEEEe
Q 009763 218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd 293 (526)
....|...|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.+|++++.||.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 346788999999999998 899999999999999999888777765 6999999999999 778999999999999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc-EE
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-IL 372 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 372 (526)
+.+ ...........|...|.+++|+|++++|++++.||.|++||+ +++.+..+. .|...|.+++|+|++. +|
T Consensus 148 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 148 FSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-----LHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp TTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-----CSSSCEEEEEECSSCTTEE
T ss_pred CCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-----cCCCcEEEEEECCCCCCEE
Confidence 986 222333333445688999999999999999999999999999 466666665 5678999999999998 99
Q ss_pred EEEeCCCcEEEEECCC----CceeeEecCCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCCCccceEEecCCC-----
Q 009763 373 GTGTSEALVKIWDVKS----QANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----- 441 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----- 441 (526)
++|+.|+.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++.|+ |++||+++++....+..+..
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 9999999999999997 5566666 5889999999999 999999999998 99999999888777664421
Q ss_pred C----------CCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC
Q 009763 442 E----------TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 509 (526)
Q Consensus 442 ~----------~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 509 (526)
. ..+..+.|+|+|++ +++.| ++||++ .....+..+..+.+...+..++|+|++++|++|+ |
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~----~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA----NSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET----TTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec----CCCceeeeecCCCCCceEEEEEEecCccEEEEec-C
Confidence 1 22333555555555 44455 999997 4556677777655567788889999999999997 9
Q ss_pred CcEEEeeCCC
Q 009763 510 RNLRVFGLPG 519 (526)
Q Consensus 510 g~v~iw~l~~ 519 (526)
|.|++|++.+
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999975
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.2e-38 Score=303.16 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=225.1
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
+...++.+|.+.|.+++|+|++++|++|+.||+|++||+.++ ..+..+..|..+|.++.|+|++++|++|+.|++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 446778899999999999999999999999999999999886 67788889999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEEECC-CCCE
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSE-NGYY 413 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~ 413 (526)
+||+.+++.+..+. +|...|.+++|+|++.+|++|+.||.|++||++++ .....+.+|...|.+++|+| ++.+
T Consensus 81 vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 81 VFNYNTGEKVVDFE-----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred EEECCCCcEEEEEe-----CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 99999999988886 67789999999999999999999999999999887 45567889999999999999 6789
Q ss_pred EEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC--CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCC
Q 009763 414 LATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH--SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 488 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~--~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~ 488 (526)
|++++.|+ |++||+++......+... +...+..+.|+| ++.+|++|+.| +++|++ ....++..+.+| .
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~----~~~~~~~~~~~h--~ 228 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----QTKSCVATLEGH--M 228 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEET----TTTEEEEEEECC--S
T ss_pred EEEEeCCCeEEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC----CCCccceeeCCC--C
Confidence 99999998 999999988776666543 246788899976 77899999999 999998 556777888776 7
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 489 GKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 489 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..|.+++|+|++.+|++|+.||.|++||+...+
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 889999999999999999999999999997654
No 27
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-40 Score=328.01 Aligned_cols=291 Identities=16% Similarity=0.188 Sum_probs=234.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
++..+.++|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||+|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34556779999999999999999999999999999988 6788899999999999999999999999999999999998
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE---EEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC---LTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
++..+.....+.+|...|.+++|+|++++|++++.|+.|++||++++.. ...+.. .|...|.+++|+|++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR----PLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS----SCCSCEEEEEECTTSSEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec----ccCCCeEEEEEcCCCCEE
Confidence 8643446777888999999999999999999999999999999998863 444431 277899999999999999
Q ss_pred EEEeCCCcEEEEECC------------------CCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc-
Q 009763 373 GTGTSEALVKIWDVK------------------SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN- 432 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~- 432 (526)
++|+.||.|++||++ .++.+..+ +|...|.+++|+|++.+|++++.|+ |++||+++++.
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 999999999999985 34556666 8999999999999999999999998 99999999887
Q ss_pred ---ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeee----------------------------
Q 009763 433 ---FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIK---------------------------- 480 (526)
Q Consensus 433 ---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~---------------------------- 480 (526)
+..+..+ ...+.+++|+|++++|++++.+ +.+|...... +....
T Consensus 241 ~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (377)
T 3dwl_C 241 PRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPILLQGNESG--WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVS 316 (377)
T ss_dssp EEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEEEECCCC-----CCSBCCCSCCCCCCBSSSSSBCCCCCC-----
T ss_pred ceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCc--eEEEeeecccccccccccccccccccccccccc
Confidence 6666665 6789999999999999999888 7788764211 00000
Q ss_pred ------eec--------------CCCCCcceEEEEEcCCC-C---EEEEEeCCCcEEEeeC
Q 009763 481 ------TFP--------------DLSGTGKATCVKFGPDA-K---YIAVGSMDRNLRVFGL 517 (526)
Q Consensus 481 ------~~~--------------~~~~~~~v~~~~~s~~~-~---~l~s~~~dg~v~iw~l 517 (526)
.+. ...|...|+++.+.+.. . .|++|+.||.|++||+
T Consensus 317 ~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 317 FTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 01257889999976543 3 6999999999999986
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9e-38 Score=304.43 Aligned_cols=280 Identities=18% Similarity=0.326 Sum_probs=243.0
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE---EEEec--ccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~---~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 294 (526)
..|...|++++|+|++++|++++ ||.|++||+.++.. +..+. +|...|.+++|+|++++|++++.||.|++||+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 36888999999999999999999 99999999987643 23333 79999999999999999999999999999999
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.+.. ......+..|...|.+++|+|+++++++++.||.|++||+++++.+..+. .|...+.+++|+|++.+|++
T Consensus 127 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 127 AAPT-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp CCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEE
T ss_pred CCCC-cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----cccCceEEEEECCCCCEEEE
Confidence 8753 23566777899999999999999999999999999999999998888775 56678999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
++.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.++ |++||+++.+.. .+. .+...+.++.|+|+
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYC 276 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTT
T ss_pred EecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCC
Confidence 9999999999999998887775 677899999999999999999988 999999987653 333 34778999999999
Q ss_pred CCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
+++|++++.+ +++|++.. ...+.... +...|.+++|+|++++|++++.||.|++|++
T Consensus 277 ~~~l~~~~~dg~i~~~~~~~----~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTPY----GASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSEEEEEETTSEEEEEETTT----CCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCcEEEEECCC----CeEEEEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999988 99999733 33333222 3678999999999999999999999999997
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=299.16 Aligned_cols=283 Identities=17% Similarity=0.234 Sum_probs=247.2
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
....+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++|++..
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 346789999999999 9999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 375 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 375 (526)
.........+.+|...|.++.| +++++++++.||.|++|| .+.....+. .|...+.++.|+| ++.+++++
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-----AHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-----CCSSCEEEEEEEETTTTEEEEE
T ss_pred cCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-----cCCCceeEEEEccCCCCEEEEE
Confidence 6555667778899999999999 578999999999999999 566666665 5667899999999 99999999
Q ss_pred eCCCcEEEEECCCCceeeEecC-CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
+.||.|++|| ..+....+.. |...|.+++|+|++. +++++.++ |++||+++++.+..+..+ ...+.+++|+|+
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 236 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCIKLLPN 236 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTT
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEEEEecC
Confidence 9999999999 4566667776 889999999999998 88888888 999999999998888765 678999999999
Q ss_pred CCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
+ .|++++.+ +++|++ ........+..+ ...|.+++|+|+++ +++++.||.|++|++..+..
T Consensus 237 ~-~l~~~~~dg~v~iwd~----~~~~~~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSK----ENGSLKQVITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp S-CEEEEETTSEEEEECT----TTCCEEEEEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred C-CEEEEecCCEEEEEEC----CCCceeEEEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9 47777777 999987 445566666665 67899999999998 66789999999999987654
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=310.46 Aligned_cols=299 Identities=13% Similarity=0.186 Sum_probs=244.5
Q ss_pred ccccCCCCCeEEEEecCCCCE-EEEEeC---CCcEEEEeCCCCcEEEEe-cccccceeEEEEecC---CCEEEEEeCCCc
Q 009763 217 PLHKTSKPGIVSLDIHYSKDV-IATGGV---DTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTE---GDLFLTGSADKT 288 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~-l~t~~~---dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~---~~~l~s~s~dg~ 288 (526)
.+..+|...|++++|+|++.. +++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +.+|++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 345679999999999999864 456665 999999999988775543 379999999999998 699999999999
Q ss_pred EEEEeCCCCCceeeeEecccCccceEEEEE------ecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCee
Q 009763 289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTV------HATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~------~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~ 361 (526)
|++||+.+.. ..+..+.+|...|.++.| +|++++|++++.||.|++||+.++. .+..+... .......+.
T Consensus 92 i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~ 168 (357)
T 3i2n_A 92 LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV-QGENKRDCW 168 (357)
T ss_dssp EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC-TTSCCCCEE
T ss_pred EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc-CCCCCCceE
Confidence 9999998763 267778899999999965 6789999999999999999999887 55555422 112244788
Q ss_pred EEE----EccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECC---CCCEEEEEeCCc-EEEEEcCCCccc
Q 009763 362 SAA----FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE---NGYYLATAAHDG-VKLWDLRKLKNF 433 (526)
Q Consensus 362 ~~~----~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~~l~~~~~d~-i~iwd~~~~~~~ 433 (526)
++. |+|++.+|++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.++ |++||+++++..
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 888 788999999999999999999999887544 45788999999999 899999999998 999999988776
Q ss_pred eEEec---CCCCCCeeEEEEcCCCC-EEEEEeCC--eEEEEEecccCc---------------ceeeeeecCCCCCcceE
Q 009763 434 RSFES---SDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKAD---------------WNCIKTFPDLSGTGKAT 492 (526)
Q Consensus 434 ~~~~~---~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~---------------~~~~~~~~~~~~~~~v~ 492 (526)
..+.. ..+...+.+++|+|++. +|++++.| +++|++...... ...+..+..| ...|+
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~ 325 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPIS 325 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--SSCEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC--CCCee
Confidence 66541 13378999999999998 89999988 999998643321 2456666665 78999
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEeeCCCCC
Q 009763 493 CVKFGPDAKYIA-VGSMDRNLRVFGLPGND 521 (526)
Q Consensus 493 ~~~~s~~~~~l~-s~~~dg~v~iw~l~~~~ 521 (526)
+++|+|++++|+ +++.||.|++|++...+
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999999999998 89999999999997643
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.9e-38 Score=303.13 Aligned_cols=241 Identities=20% Similarity=0.391 Sum_probs=226.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|...|.+++|++++.++++|+.||+|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~- 154 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG- 154 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +|...|.+++|+|++.+|++|+.|
T Consensus 155 --~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 155 --KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp --SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTT
T ss_pred --ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCC
Confidence 5666777888999999999999999999999999999999999888775 567789999999999999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
|.|++||+++++....+.+|...|.+++|+|++.+|++++.|+ |++||+++++++..+..+ ...|.+++|+|++.+|
T Consensus 228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKI 305 (321)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEE
Confidence 9999999999999999999999999999999999999999998 999999999998888765 6789999999999999
Q ss_pred EEEeCC--eEEEEE
Q 009763 458 AVASAD--IRVYQV 469 (526)
Q Consensus 458 ~~~~~d--i~v~~~ 469 (526)
++++.| ++||+.
T Consensus 306 ~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 306 VSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTCCEEEEEC
T ss_pred EEEeCCCeEEEEeC
Confidence 999998 999985
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.5e-37 Score=322.79 Aligned_cols=279 Identities=25% Similarity=0.460 Sum_probs=249.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
...|...|++++|+|++++|++++.|+.|++||.. ++....+.+|...|.+++|+|++.+|++++.||+|++||...
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-- 334 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-- 334 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--
Confidence 45688899999999999999999999999999964 678888999999999999999999999999999999999876
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
..+..+.+|...|.+++|+|+++++++++.||.+++||. +++.+..+. .|...|.+++|+|++.+|++++.|
T Consensus 335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-----CCSSCEEEEEECTTSSCEEEEETT
T ss_pred --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-----CCCCCeEEEEECCCCCEEEEEeCC
Confidence 456677889999999999999999999999999999996 455666665 566789999999999999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
+.|++||. +++.+..+.+|...|++++|+|++.+|++++.|+ |++||. +++.+..+..+ ...+.+++|+|++++|
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTI 482 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEEEECTTSCEE
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC--CCCEEEEEEcCCCCEE
Confidence 99999995 5778888999999999999999999999999998 999996 45666666655 6789999999999999
Q ss_pred EEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 458 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
++++.| +++|+. ....+..+..| ...|++++|+|++++|++++.||.|++||.++
T Consensus 483 as~~~d~~i~iw~~-----~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-----NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEETTSEEEEEET-----TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEeCCCEEEEEcC-----CCCEEEEEeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 999998 999984 35567777775 78999999999999999999999999999754
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.2e-38 Score=314.12 Aligned_cols=241 Identities=22% Similarity=0.449 Sum_probs=226.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus 146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~- 224 (410)
T 1vyh_C 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG- 224 (410)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-
T ss_pred EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC----------
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---------- 368 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------- 368 (526)
.++..+.+|...|.++.|+|++.+|++|+.|++|++||+.++.....+. .|...|.+++|+|+
T Consensus 225 --~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 225 --YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-----EHRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCC
T ss_pred --cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-----CCCceEEEEEEcCcccccchhhhc
Confidence 6788889999999999999999999999999999999999998887775 56788999999996
Q ss_pred ----------CcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEe
Q 009763 369 ----------GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 369 ----------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 437 (526)
+.+|++|+.||.|++||++++..+..+.+|...|++++|+|+|.+|++++.|+ |++||+++++.+..+.
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 67899999999999999999999999999999999999999999999999998 9999999999988887
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
.+ ...|++++|+|++.+|++|+.| ++||++
T Consensus 378 ~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 AH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CC--SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 76 6789999999999999999999 999975
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=320.98 Aligned_cols=298 Identities=15% Similarity=0.253 Sum_probs=250.7
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC----CcEEEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~ 295 (526)
.|...|++++|+|++++|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4778999999999999999999999999999987 4588899999999999999998 8999999999999999998
Q ss_pred CCC------ceeeeEecccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCC-CCCCCCCeeEEEEcc
Q 009763 296 EDG------NYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHP 367 (526)
Q Consensus 296 ~~~------~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 367 (526)
+.. .......+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.... ..+|...+.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 764 22223344679999999999998 7899999999999999999999888776321 112367899999999
Q ss_pred CC-cEEEEEeCCC---cEEEEECCCC-ceeeEec-CCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCCCccceEEecC
Q 009763 368 DG-LILGTGTSEA---LVKIWDVKSQ-ANVAKFD-GHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 368 ~~-~~l~~g~~dg---~i~iwd~~~~-~~~~~~~-~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 439 (526)
++ .++++++.|+ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++++.|+ |++||+++++.+..+..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 87 7999999998 9999999986 6677777 8999999999999 899999999998 999999999998888776
Q ss_pred CCCCCeeEEEEcCCC-CEEEEEeCC--eEEEEEecccCcceeee-----------eecC------------------CCC
Q 009763 440 DSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIK-----------TFPD------------------LSG 487 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~-----------~~~~------------------~~~ 487 (526)
...+.+++|+|++ .+|++++.| +++|++........... .+.. ..+
T Consensus 305 --~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (416)
T 2pm9_A 305 --GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382 (416)
T ss_dssp --SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTT
T ss_pred --CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccc
Confidence 6789999999999 899999988 99999865332111100 0000 003
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
...+.+++|+|+|++|++++.||.|+||++...
T Consensus 383 ~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 567789999999999999999999999999764
No 35
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-38 Score=321.00 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=228.0
Q ss_pred cCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcE--EEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 009763 220 KTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 220 ~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~ 295 (526)
..|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++++|++|+.||+|++||+.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 45778899999999 567999999999999999987654 455678999999999998 68899999999999999997
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc-EEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGT 374 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 374 (526)
+. ..........+...+.+++|+|++.+|++|+.||.|++||++.. .+..+ .+|...|.+++|+|++. +|++
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 196 GN-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp SC-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEEECTTCSSEEEE
T ss_pred CC-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeeeecCCCceEEEE
Confidence 63 22222222344556889999999999999999999999999754 33333 36788999999999775 8889
Q ss_pred EeCCCcEEEEECCCCceeeEe---cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC----CCCee
Q 009763 375 GTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----ETPTN 446 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----~~~i~ 446 (526)
|+.|+.|++||+++.+....+ .+|...|++++|+|+|.+|++++.|+ |++||++++.....+..+.. ...+.
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence 999999999999887654433 56889999999999999999999998 99999999888776655432 12344
Q ss_pred EEEEcCCCCEEEEEeC-----------C---eEEEEEecccCcceeeeeecCCCCCcceEEE-EEcCCCCEEEEEeCCCc
Q 009763 447 SVDFDHSGSYLAVASA-----------D---IRVYQVASVKADWNCIKTFPDLSGTGKATCV-KFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~-----------d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~ 511 (526)
...|+|++.++++++. + +++|+. .....+..+..+ |...|.++ +|+|+|++|++|+ |+.
T Consensus 349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~----~~g~~~~~l~~~-~~~~v~s~~~fspdg~~lasg~-d~~ 422 (435)
T 4e54_B 349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG----NSGKMMCQLYDP-ESSGISSLNEFNPMGDTLASAM-GYH 422 (435)
T ss_dssp BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS----SSCCEEEEECCS-SCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC----CCCcEEEEEeCC-CCCcEEEEEEECCCCCEEEEEc-CCc
Confidence 5678888887777642 1 788987 444555555433 36677777 6999999999876 889
Q ss_pred EEEeeCCCCCC
Q 009763 512 LRVFGLPGNDA 522 (526)
Q Consensus 512 v~iw~l~~~~~ 522 (526)
|+||++..++.
T Consensus 423 i~iW~~~~gk~ 433 (435)
T 4e54_B 423 ILIWSQQEART 433 (435)
T ss_dssp EEECCCC----
T ss_pred EEEEECCcCee
Confidence 99999988764
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=303.55 Aligned_cols=239 Identities=20% Similarity=0.258 Sum_probs=206.6
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~----~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
|..+|.+++|++++ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++++|+|++++|++|+.||+|++||+.++
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 56789999999974 67899999999999999886543 34589999999999999999999999999999999887
Q ss_pred CceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 375 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 375 (526)
+++..+.+|...|++++|+|++ .+|++++.|++|++||+++++....+... .+...+.+++|+| ++.+|++|
T Consensus 160 ---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 160 ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---APGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp ---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEE
T ss_pred ---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc---eeeccceeeeecCCCCcceEEe
Confidence 7888999999999999999987 47899999999999999999888777532 4445789999999 56789999
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
+.||.|++||+++++.+..+.+|...|++++|+|++ ++|++++.|+ |+|||+++++... +. .|...|++++|+|+
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPL 310 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSS
T ss_pred ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCC
Confidence 999999999999999999999999999999999997 5799999998 9999999887543 33 44789999999999
Q ss_pred CC-EEEEEeCC--eEEEEEe
Q 009763 454 GS-YLAVASAD--IRVYQVA 470 (526)
Q Consensus 454 ~~-~l~~~~~d--i~v~~~~ 470 (526)
+. +|++++.| |++|++.
T Consensus 311 ~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp STTEEEEEETTSCEEEEECC
T ss_pred CCeEEEEEcCCCeEEEEECC
Confidence 86 56688888 9999984
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-36 Score=295.39 Aligned_cols=251 Identities=22% Similarity=0.386 Sum_probs=221.1
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
+...++.+|.+.|++++|+|++++|++|+.||+|++||+.++ .....+..|...|.+++|+|+++++++++.|+.++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 456788899999999999999999999999999999999876 56777788999999999999999999999999999
Q ss_pred EEeCCCCe----EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCC
Q 009763 336 FYDLSSGI----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 411 (526)
Q Consensus 336 iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (526)
+||+.++. ....+. +|...+.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus 123 iw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 123 IYNLKTREGNVRVSRELA-----GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEETTTCSBSCEEEEEEE-----CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEECccCCCcceeEEEec-----CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 99998753 333333 6778999999998876 8889999999999999999999999999999999999999
Q ss_pred CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCC
Q 009763 412 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 488 (526)
Q Consensus 412 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~ 488 (526)
.+|++++.|+ |++||++++.....+..+ ...|.+++|+|++.+|++|+.| +++|++. ....+..+....+.
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~----~~~~~~~~~~~~~~ 270 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLR----ADQELMTYSHDNII 270 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCC
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCC--cCCEEEEEEcCCCCEEEEEcCCCcEEEEECC----CCcEEEEEccCCcc
Confidence 9999999998 999999999888888765 6789999999999999999998 9999983 34445555443335
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 489 GKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 489 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..|++++|+|+|++|++|+.||.|++||+....
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 679999999999999999999999999987643
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-37 Score=306.44 Aligned_cols=279 Identities=18% Similarity=0.300 Sum_probs=236.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
.+.+++|++ ..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.++ ..+
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~ 169 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKL 169 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEE
Confidence 355666664 5577888999999999999998887765 8899999999999999999999999999999886 677
Q ss_pred EecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC-CeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEE
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 382 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 382 (526)
..+.+|...|.+++|+ ++++++++.||.|++||++. +..+..+. .|...|.+++|+|++.+|++|+.||.|+
T Consensus 170 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 170 RTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 7888999999999994 67999999999999999994 55555554 5678999999999999999999999999
Q ss_pred EEECCCCceeeEecCCCCCeEEEEECCCC-CEEEEEe--CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 383 IWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
+||+++++.+..+..|...|.+++|+|++ .++++++ .++ |++||+++++.+..+.. ...+.+++|+|++.+++
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEE
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCCCCeEE
Confidence 99999999999999999999999999976 5666655 567 99999999998888864 56899999999999999
Q ss_pred EEe--CC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 459 VAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 459 ~~~--~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
+++ .+ +++|++... .......+..| ...|.+++|+|++++|++++.||.|++|++..++.
T Consensus 320 ~~~g~~dg~i~v~~~~~~--~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSS--GLTKQVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTTCEEEEEEEETT--EEEEEEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred EEeecCCCcEEEEecCCc--cceeEEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 954 45 999998432 13333344454 78999999999999999999999999999987653
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-36 Score=296.95 Aligned_cols=284 Identities=18% Similarity=0.257 Sum_probs=243.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
+..+|.+++|+|+|++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|++||+.+.....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 345789999999999999998888888877665555555557999999999999999999999 9999999998764333
Q ss_pred eeEecc--cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE--EEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 302 CKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 302 ~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
....+. +|...|.+++|+|++++|++++.||.|++||+.+++. ...+. .|...+.+++|+|++.++++++.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEET
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-----cCCCceEEEEECCCCCEEEEEeC
Confidence 444433 7899999999999999999999999999999998873 33333 55678999999999999999999
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
||.|++||+++++.+..+..|...|.+++|+|++.+|++++.++ |++||+++++....+.. ...+.+++|+|++.+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEW 238 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSE
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999998 99999999988777654 568999999999999
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|++++.+ +++|++.. ... ..+.. |...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 239 l~~~~~~~~i~~~~~~~----~~~-~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNK----PDK-YQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEEETTSCEEEEETTS----SCE-EEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCcEEEEECCC----CCe-EEEcC--CccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 9999987 99998743 222 23444 37889999999999999999999999999998764
No 40
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=315.09 Aligned_cols=291 Identities=14% Similarity=0.238 Sum_probs=235.8
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCC---Cc---EEEEecccccceeEEEEecCCCEEEEEeCCCcE
Q 009763 217 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS---GQ---IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~---~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 289 (526)
.+..+|.+.|++++|+| ++++|++|+.||.|++||+.+ +. ....+ +|...|.+++|+|++++|++|+.||+|
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 34578899999999999 999999999999999999866 32 22333 489999999999999999999999999
Q ss_pred EEEeCC---CCCce-----eeeEecc--c--CccceEEEE--EecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC
Q 009763 290 RVWQGS---EDGNY-----DCKHTLK--D--HTAEVQAVT--VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 355 (526)
Q Consensus 290 ~iwd~~---~~~~~-----~~~~~~~--~--h~~~v~~l~--~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 355 (526)
++||+. .+... ..+..+. . +...+.++. +++++.+|++++.||.|++||+++++.+..+... .
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~ 212 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS---P 212 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC---G
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC---C
Confidence 999985 32110 1111111 2 556677777 5578999999999999999999999998888631 2
Q ss_pred CCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec-CCCCCeEEEEECC----CCCEEEEEeCCc-EEEEEcCC
Q 009763 356 RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSE----NGYYLATAAHDG-VKLWDLRK 429 (526)
Q Consensus 356 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~----~~~~l~~~~~d~-i~iwd~~~ 429 (526)
|...|.+++|+|++.+|++|+.||.|++||+++++.+..+. .|...|.+++|+| ++.+|++++.|+ |++||+++
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 56789999999999999999999999999999999988886 6778999996654 688999999999 99999999
Q ss_pred CccceEEecCC------------------------CCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 430 LKNFRSFESSD------------------------SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 430 ~~~~~~~~~~~------------------------~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
++.+..+..+. +...|.+++|+ ++.+|++|+.| +++|++.... ....+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~ 367 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS----SSKAVI 367 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG----GCEEEE
T ss_pred CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc----cceEEe
Confidence 98877776442 34568899999 78999999988 9999984432 222222
Q ss_pred CC-----------------------------------CCCcceEEEEEcCC--CCEEEEEeCCCcEEEee
Q 009763 484 DL-----------------------------------SGTGKATCVKFGPD--AKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 484 ~~-----------------------------------~~~~~v~~~~~s~~--~~~l~s~~~dg~v~iw~ 516 (526)
.+ .|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 21 15789999999998 78999999999999995
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-35 Score=298.55 Aligned_cols=286 Identities=15% Similarity=0.265 Sum_probs=238.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
.+....|++++++|++|+.||.|++||+.+++....+.+|...|++++|+|++++|++|+.||.|++||+.++ ..+.
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~ 175 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG---SNPR 175 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CCCE
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC---cCce
Confidence 3444568999999999999999999999999999998999999999999999999999999999999999886 5667
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC---------------------CCeeEE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP---------------------EGYTSA 363 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------------~~v~~~ 363 (526)
.+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.... .+. ..+.++
T Consensus 176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE--NPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT--BTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC--CCCCCccEEEEecCCcceeeecccCcccce
Confidence 788999999999999999999999999999999999999888876421 222 344555
Q ss_pred EEccCCcEEEEEeCCCcEEEEECCCCceeeEec-CCCCCeEEEEECCCCC-EEEEEeCCc-EEEEEcCCCcc-ceEEecC
Q 009763 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGY-YLATAAHDG-VKLWDLRKLKN-FRSFESS 439 (526)
Q Consensus 364 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~-~l~~~~~d~-i~iwd~~~~~~-~~~~~~~ 439 (526)
+|+|++.+|++|+.||.|++||+++++....+. .|...|.+++|+|++. +|++++.|+ |++||+++++. +..+..+
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence 567899999999999999999999998777764 4788999999999998 999999998 99999998755 5666653
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcc-----eeeeeecCCCCCcceEEEEEcCCCC---EEEEEeCC
Q 009763 440 DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW-----NCIKTFPDLSGTGKATCVKFGPDAK---YIAVGSMD 509 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~d 509 (526)
+...+.++.+ +++.+|++++.| +++|++....... .....+.. +.+.|.+++|+|++. .|++++.+
T Consensus 334 -~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 334 -EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVS--NDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp -TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECC--SSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred -CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEcc--CCcceEEEEEccCCCCcceEEEEcCC
Confidence 2567888855 578899999988 9999985532211 11112222 477899999999999 77778889
Q ss_pred CcEEEeeCCC
Q 009763 510 RNLRVFGLPG 519 (526)
Q Consensus 510 g~v~iw~l~~ 519 (526)
|.+.+|++..
T Consensus 410 g~~~~~~~~~ 419 (420)
T 3vl1_A 410 NFCALYNLSN 419 (420)
T ss_dssp TEEEEEESCC
T ss_pred ceEEEEeccC
Confidence 9999999865
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-36 Score=291.19 Aligned_cols=257 Identities=20% Similarity=0.316 Sum_probs=213.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--CcEEEEecccccceeEEEEec--CCCEEEEEeCCCcEEEEe
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--GQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~--~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd 293 (526)
+..+|...|++++|+|+|++||+|+.||+|+|||+.. ++.+..+.+|.+.|++++|++ ++++|++|+.||+|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4567899999999999999999999999999999874 467889999999999999986 489999999999999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeE--EEEeecCCCCCCCCCeeEEEEccC-
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPD- 368 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~- 368 (526)
+.++ ....+..+.+|...|.+++|+|+ +.+|++++.||.|++||++++.. ...+. +|...|.+++|+|+
T Consensus 84 ~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 84 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-----AHAIGVNSASWAPAT 157 (297)
T ss_dssp BSSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-----CCSSCEEEEEECCCC
T ss_pred cCCC-ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-----cccCccceEeecCCc
Confidence 9764 22355667789999999999997 88999999999999999987632 22222 66788999999997
Q ss_pred ------------CcEEEEEeCCCcEEEEECCCCc----eeeEecCCCCCeEEEEECCCC---CEEEEEeCCc-EEEEEcC
Q 009763 369 ------------GLILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSENG---YYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 369 ------------~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~---~~l~~~~~d~-i~iwd~~ 428 (526)
+.+|++|+.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++.|+ |++||++
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 5799999999999999998765 566788999999999999984 8999999998 9999998
Q ss_pred CCccc---eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeee
Q 009763 429 KLKNF---RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKT 481 (526)
Q Consensus 429 ~~~~~---~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~ 481 (526)
..... ..+....+...+.+++|+|+|++|++++.| ++||+.... ..|..+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~-g~w~~~~~ 294 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE-GKWEPAGE 294 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT-SCEEEC--
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC-CcEEeccc
Confidence 75321 122113346789999999999999999988 999997432 34554443
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-37 Score=313.19 Aligned_cols=284 Identities=12% Similarity=0.184 Sum_probs=238.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
..+++++|+|++++|++|+.||.|++||..+++....+..| ..+....|++++++|++|+.||.|++||+.++ ...
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---cee
Confidence 34568999999999999999999999999887666566656 44555578899999999999999999999876 677
Q ss_pred EecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEE
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 383 (526)
..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+. +|...|.+++|+|++.+|++++.||.|++
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 7778999999999999999999999999999999999998888775 67789999999999999999999999999
Q ss_pred EECCCCceeeEecC---CCCCeEE---------------------EEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 384 WDVKSQANVAKFDG---HVGAVTA---------------------ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 384 wd~~~~~~~~~~~~---~~~~i~~---------------------l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
||+++++.+..+.. +...|.+ ++|+|++.+|++++.++ |++||+++++....+..
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 99999998888864 3334444 45578999999999998 99999999887776654
Q ss_pred CCCCCCeeEEEEcCCCC-EEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 439 SDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 439 ~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
.+...+.+++|+|++. +|++|+.+ +++|++.... ..+..+..+ +...|.++.| +++++|++++.||.|++|
T Consensus 288 -~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 288 -KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE---CPVGEFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp -TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEE
T ss_pred -ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc---Cchhhhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEE
Confidence 2367899999999999 99999998 9999984322 223444443 3667888855 578899999999999999
Q ss_pred eCCCCCC
Q 009763 516 GLPGNDA 522 (526)
Q Consensus 516 ~l~~~~~ 522 (526)
++.....
T Consensus 362 ~~~~~~~ 368 (420)
T 3vl1_A 362 IISDPES 368 (420)
T ss_dssp EECCTTC
T ss_pred eccCCCC
Confidence 9987533
No 44
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.3e-36 Score=290.53 Aligned_cols=242 Identities=22% Similarity=0.355 Sum_probs=218.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+..
T Consensus 61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-- 138 (319)
T 3frx_A 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-- 138 (319)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--
T ss_pred EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ceeeeEecccCccceEEEEEecC------CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHAT------NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
.++..+.+|...|.++.|+|. +.++++++.|+.|++||+++++....+. +|...|.+++|+|++.+|
T Consensus 139 --~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 139 --QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-----GHNSNINTLTASPDGTLI 211 (319)
T ss_dssp --CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-----CCCSCEEEEEECTTSSEE
T ss_pred --CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-----CCCCcEEEEEEcCCCCEE
Confidence 567788899999999999985 4489999999999999999998877765 677899999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCC------CCCCee
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD------SETPTN 446 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~------~~~~i~ 446 (526)
++|+.||.|++||+++++.+..+.. ...|.+++|+|++.+|++++.+++++|++........+.... +...+.
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 290 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCccee
Confidence 9999999999999999999888875 468999999999999999998889999998776655554321 245688
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 447 SVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
+++|+|+|++|++|+.| ++||++.
T Consensus 291 ~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 291 SLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEECCCCCEEEEeecCceEEEEEEe
Confidence 99999999999999999 9999984
No 45
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-36 Score=292.46 Aligned_cols=261 Identities=22% Similarity=0.347 Sum_probs=216.7
Q ss_pred CcEEEEeccccc-ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCe
Q 009763 255 GQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 333 (526)
Q Consensus 255 ~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~ 333 (526)
...+..+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.++..........+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356778889988 9999999999999999999999999998775211122234689999999999999999999999999
Q ss_pred EEEEeCCCCeE--EEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc---eeeEecCCCCCeEEEEEC
Q 009763 334 WCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA---NVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 334 i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s 408 (526)
+++||+..+.. +..+. +|...|.+++|+|++++|++|+.|+.|++||++++. .+..+.+|...|.+++|+
T Consensus 85 v~iw~~~~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLE-----GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp EEEEEECCC-EEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred EEEEEccCCCeEEEEEcc-----CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 99999987743 34443 677899999999999999999999999999998763 456778899999999999
Q ss_pred CCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEeccc-----------C
Q 009763 409 ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK-----------A 474 (526)
Q Consensus 409 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~-----------~ 474 (526)
|++.+|++++.|+ |++||++............|...|.+++|+|+|++|++++.| ++||+..... .
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 9999999999998 999999887644333334447899999999999999999999 9999874321 1
Q ss_pred cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 475 DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.+.++..+.+. |...|.+++|++++..|++++.|+.|++|++..+.
T Consensus 240 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 240 SWKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ccceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 23445555442 47789999999999999999999999999987643
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=310.38 Aligned_cols=288 Identities=15% Similarity=0.295 Sum_probs=244.7
Q ss_pred CCeEEEEecCCCC-EEEEE----------eCCCcEEEEeCCCCc---EEEEecccccceeEEEEecCCCEEEEEeCCCcE
Q 009763 224 PGIVSLDIHYSKD-VIATG----------GVDTNAVLFDRPSGQ---IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (526)
Q Consensus 224 ~~I~~~~~s~~~~-~l~t~----------~~dg~v~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 289 (526)
..|.+++|+|++. +|++| +.||.|++||+.++. .+..+ .|...|.+++|+|++.+|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3688999999987 99999 889999999998875 33333 588999999999999999999999999
Q ss_pred EEEeCCCCCc-eeeeEecccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCe------EEEEeecCCCCCCCCCee
Q 009763 290 RVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGI------CLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 290 ~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~ 361 (526)
++||+..... ......+.+|...|++++|+|+ +++|++++.||.|++||+.++. ....+ .....|...+.
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~ 169 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP--GQSMSSVDEVI 169 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC--CCSCCSSCCCC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc--ccccCCCCCee
Confidence 9999987211 1477788899999999999998 8999999999999999999876 32222 11236778999
Q ss_pred EEEEccC-CcEEEEEeCCCcEEEEECCCCceeeEecCC------CCCeEEEEECCCC-CEEEEEeCC----cEEEEEcCC
Q 009763 362 SAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDGH------VGAVTAISFSENG-YYLATAAHD----GVKLWDLRK 429 (526)
Q Consensus 362 ~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~-~~l~~~~~d----~i~iwd~~~ 429 (526)
+++|+|+ +.+|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++.+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999998 799999999999999999999998888766 7899999999997 688888887 599999998
Q ss_pred C-ccceEEe-cCCCCCCeeEEEEcC-CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCC-CEE
Q 009763 430 L-KNFRSFE-SSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA-KYI 503 (526)
Q Consensus 430 ~-~~~~~~~-~~~~~~~i~~i~~s~-~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 503 (526)
+ .....+. .+ ...+.+++|+| ++.+|++++.| +++|++ .....+..+..| ...|.+++|+|++ .+|
T Consensus 250 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~----~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 250 ANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNP----ESAEQLSQFPAR--GNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp TTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECS----SSCCEEEEEECS--SSCCCCEEECTTCTTEE
T ss_pred CCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeC----CCCccceeecCC--CCceEEEEECCCCCCEE
Confidence 6 4555554 33 67899999999 99999999988 999997 445667777765 7789999999999 899
Q ss_pred EEEeCCCcEEEeeCCCCCC
Q 009763 504 AVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 504 ~s~~~dg~v~iw~l~~~~~ 522 (526)
++++.||.|++|++.....
T Consensus 322 ~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EECCSSSEEEEEESCCCCC
T ss_pred EEEecCCcEEEEEccCCCC
Confidence 9999999999999987654
No 47
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=305.06 Aligned_cols=290 Identities=20% Similarity=0.359 Sum_probs=230.9
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----------EEEEecccc------------cceeEEEEecCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----------IVTTLSGHS------------KKVTSVKFVTEG 277 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~-----------~~~~~~~h~------------~~V~~l~~~~~~ 277 (526)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 356799999999999999999999999999998876 578889998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEeCCCCCce------------------------------------eeeEe-cccCccceEEEEE
Q 009763 278 --DLFLTGSADKTVRVWQGSEDGNY------------------------------------DCKHT-LKDHTAEVQAVTV 318 (526)
Q Consensus 278 --~~l~s~s~dg~i~iwd~~~~~~~------------------------------------~~~~~-~~~h~~~v~~l~~ 318 (526)
.+|++++.||+|++||+...... .+... ..+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998653110 00112 3679999999999
Q ss_pred ecCCCEEEEEECCCeEEEEeCCC-CeEEEEee--cCCCCCCCCCeeEEEEccCC-cEEEEEeCCCcEEEEECCCCce---
Q 009763 319 HATNKYFVTASLDNTWCFYDLSS-GICLTQVS--DAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQAN--- 391 (526)
Q Consensus 319 ~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~--- 391 (526)
+|++++|++| .||.|++||+++ +.....+. ......|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 899999999994 43443321 11123677899999999998 9999999999999999999886
Q ss_pred -eeEecCCCC------------CeEEEEECCCCCEEEEEeCCc-EEEEEcCC-CccceEEecCCCCC-------------
Q 009763 392 -VAKFDGHVG------------AVTAISFSENGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSET------------- 443 (526)
Q Consensus 392 -~~~~~~~~~------------~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~------------- 443 (526)
+..+..|.. .|.+++|+|+|.+|++++. + |++||+++ ++.+..+..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 678887775 8999999999999999999 7 99999997 88888877653211
Q ss_pred CeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec-------------------------------CCCCCcc
Q 009763 444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP-------------------------------DLSGTGK 490 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~ 490 (526)
.+..++|+|++.+|++|+.| +++|++.... .+. +. .......
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR----DIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCC----EEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCc----cee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 13349999999999999998 9999974321 111 10 1122457
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 491 ATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 491 v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
|..++|+|++++||+++.++ +++|.-.
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eeEEEECCCCCEEEEEecce-eeeeccc
Confidence 89999999999999998775 7788643
No 48
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-35 Score=298.27 Aligned_cols=276 Identities=19% Similarity=0.344 Sum_probs=237.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.++.|+|+++ ++||+|. |++|+|||..+++....+. +|...|++|+|+|+|++|++|+.||+|+|||+.++ ++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cE
Confidence 4678999974 6888876 9999999999999877654 67888999999999999999999999999999887 78
Q ss_pred eEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE-EEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
+..+.+|...+.++.++ +.++++|+.|+.+.+||....... ..+. +|...+..+.++|++.++++++.||.+
T Consensus 182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-----~h~~~~~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-----ccccceeeeeecCCCCeeeeeeccccc
Confidence 88899999999998875 789999999999999999875443 3443 667889999999999999999999999
Q ss_pred EEEECCCCc----eeeEecCCCCCeEEEEECCCC-CEEEEE--eCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 382 KIWDVKSQA----NVAKFDGHVGAVTAISFSENG-YYLATA--AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 382 ~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~-~~l~~~--~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
++||..+++ .+.....|...|.+++|+|.+ .+++++ +.|+ |++||+++++....+..+ ..+.++.|+++
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~ 331 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPH 331 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETT
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc---cceeeeeecCC
Confidence 999998764 345667788999999999964 555554 3567 999999999988888764 57999999999
Q ss_pred CCEEEEEe--CC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 454 GSYLAVAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 454 ~~~l~~~~--~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+..+++++ .+ ++||++ .....+..+.+| .+.|++++|+|||++|++|+.||+|+||++...+
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~----~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKY----PTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TTEEEEEECTTTCCEEEEET----TTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred CCeEEEEEecCCCEEEEEEC----CCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99998875 34 999998 567788888876 7899999999999999999999999999997644
No 49
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-35 Score=284.22 Aligned_cols=254 Identities=26% Similarity=0.521 Sum_probs=223.0
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeE
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 334 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i 334 (526)
......+.+|...|++++|+|++++|++|+.||.|++|+..++ .....+.+|...|.+++|+|++++|++++.||.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 4556788899999999999999999999999999999999876 5677788999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEE
Q 009763 335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 414 (526)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 414 (526)
++||+++++.+..+. +|...|.++.|+|++.+|++|+.||.|++||+++++.+..+..|...|.+++|+|++.+|
T Consensus 90 ~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 90 KIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 999999999888876 567789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcce
Q 009763 415 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 491 (526)
Q Consensus 415 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 491 (526)
++++.|+ |++||+++++.+..+... +...+..++|+|++++|++++.+ +++|++ .....+..+..|......
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~~~~~~~~~~~~~~~~ 239 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTGHKNEKYC 239 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEET----TTTEEEEEECSSCCSSSC
T ss_pred EEEeCCCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEEC----CCCcEEEEEEecCCceEE
Confidence 9999998 999999998887766443 25679999999999999999988 999998 455667777666433333
Q ss_pred EEEEE-cCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 492 TCVKF-GPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 492 ~~~~~-s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
....+ .+++.+|++|+.||.|++||+..++
T Consensus 240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp CCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred EEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 33344 4688999999999999999998654
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=295.88 Aligned_cols=291 Identities=21% Similarity=0.327 Sum_probs=236.5
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEe-------------cccccceeEEEEec-CCCEEE
Q 009763 217 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTL-------------SGHSKKVTSVKFVT-EGDLFL 281 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~~~~~-------------~~h~~~V~~l~~~~-~~~~l~ 281 (526)
.+...|.+.|++++|+| ++++|++|+.||.|++||+.++.....+ .+|...|.+++|+| ++.+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 45667999999999999 9999999999999999999887554333 25999999999999 778999
Q ss_pred EEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC
Q 009763 282 TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358 (526)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 358 (526)
+++.||.|++||+.++ .....+. +...+.++.|+|. +.++++++.||.|++||++++..+..+. .|..
T Consensus 117 s~~~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~ 187 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-----GHRQ 187 (408)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----CCCS
T ss_pred EEeCCCeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----CCCC
Confidence 9999999999999886 4555554 7788999999884 4599999999999999999998877775 5678
Q ss_pred CeeEEEEccCCc-EEEEEeCCCcEEEEECCCCc-eeeEe---------------cCCCCCeEEEEECCCCCEEEEEeCCc
Q 009763 359 GYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQA-NVAKF---------------DGHVGAVTAISFSENGYYLATAAHDG 421 (526)
Q Consensus 359 ~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~l~~s~~~~~l~~~~~d~ 421 (526)
.|.+++|+|++. +|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++.+|++++.|+
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 999999999988 69999999999999998765 33333 46888999999999999999999998
Q ss_pred -EEEEEcCCCccceEEecCCC----CCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEE
Q 009763 422 -VKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVK 495 (526)
Q Consensus 422 -i~iwd~~~~~~~~~~~~~~~----~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (526)
|++||+++++....+..... ............+.+++++... +++|++ .....+..+..| ...|++++
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----~~~~~~~~~~~~--~~~v~~~~ 341 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV----YSGEQITMLKGH--YKTVDCCV 341 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET----TTCCEEEEECCC--SSCEEEEE
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC----cCCcceeeeccC--CCeEEEEE
Confidence 99999998876554433211 1122233334445555555555 999998 556677777765 78999999
Q ss_pred EcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 496 FGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 496 ~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
|+|++++|++|+.||.|++|++...+.
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC---
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 999999999999999999999987654
No 51
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.5e-36 Score=291.21 Aligned_cols=297 Identities=16% Similarity=0.218 Sum_probs=225.5
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecccccceeEEEEec--CCCEEEEEeCCCcEE
Q 009763 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVR 290 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~ 290 (526)
.+..+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|++++|+| ++++|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456789999999999999999999999999999999876 46778889999999999999 699999999999999
Q ss_pred EEeCCCCC------ceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEee--------cCCCC
Q 009763 291 VWQGSEDG------NYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVS--------DAGTD 354 (526)
Q Consensus 291 iwd~~~~~------~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~ 354 (526)
+||+..+. .+.....+..|...|.+++|+|+ +++|++++.||.|++||+++++.+..+. .....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998742 12557778899999999999999 9999999999999999998876432221 11123
Q ss_pred CCCCCeeEEEEccC---CcEEEEEeCCCcEEEEECCCCce--eeEecCCCCCeEEEEECCCC----CEEEEEeCCc-EEE
Q 009763 355 GRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKL 424 (526)
Q Consensus 355 ~~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~----~~l~~~~~d~-i~i 424 (526)
.+...+.++.|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|+|++ .+|++++.|+ |++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 56678999999997 89999999999998888887765 66778899999999999998 8999999998 999
Q ss_pred EEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
||++........... ........+.+....+..+..+ +.+|+. .....+..+..| ...|++++|+|
T Consensus 245 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h--~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN----LQVELLSEHDDH--NGEVWSVSWNL 316 (351)
T ss_dssp EEEEECC-----------------------------------------CCS----EEEEEEEEECTT--SSCEEEEEECS
T ss_pred EeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeeccc----ccccEEEEEecc--cccEEEEEEcC
Confidence 999876554433222 2333344444444444444333 233322 344566667665 78899999999
Q ss_pred CCCEEEEEeCCCcEEEeeCCCCC
Q 009763 499 DAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 499 ~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
++++|++|+.||.|++|++..+.
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCEEEEecCCCcEEEEecCcCc
Confidence 99999999999999999998754
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.3e-35 Score=300.20 Aligned_cols=284 Identities=21% Similarity=0.394 Sum_probs=239.6
Q ss_pred ccCCCCC-eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 219 HKTSKPG-IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 219 ~~~~~~~-I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
..+|... +.++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++||+.++
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence 4456666 566666 47899999999999999999999999999999999999999888 8999999999999999886
Q ss_pred CceeeeEecccCccceEEEEEe--cCCCEEEEEECCCeEEEEeCCCCeEEEEeec------------------CCCCCCC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVH--ATNKYFVTASLDNTWCFYDLSSGICLTQVSD------------------AGTDGRP 357 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~--p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------~~~~~~~ 357 (526)
.++..+.+|...|.+++|+ ++++++++++.||.|++||+.++........ ....+|.
T Consensus 194 ---~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 194 ---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp ---EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred ---cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 7788889999999999998 4778999999999999999988764322100 0012455
Q ss_pred CCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEE
Q 009763 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 436 (526)
..+.++ ++++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+++++.+..+
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 666665 67889999999999999999999999999999999999999999999999999998 999999999998888
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 009763 437 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 437 ~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 514 (526)
..+ ...+.++.|+ +.+|++++.| +++|++.. ........ +...+..++|++++++|++|+ ||.|++
T Consensus 349 ~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~----~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 349 QGH--TALVGLLRLS--DKFLVSAAADGSIRGWDAND----YSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp CCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTT----CCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred eCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCC----Cceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence 765 6789999997 6899999988 99999843 22333322 255677889999999999998 999999
Q ss_pred eeCCCCCC
Q 009763 515 FGLPGNDA 522 (526)
Q Consensus 515 w~l~~~~~ 522 (526)
||+.+++.
T Consensus 417 wd~~~g~~ 424 (464)
T 3v7d_B 417 YNLRSGKL 424 (464)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99987653
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-35 Score=324.41 Aligned_cols=287 Identities=17% Similarity=0.295 Sum_probs=254.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~- 87 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG- 87 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~ 376 (526)
..+..+.+|...|++++|+|++++|++++.||.|++||+.++ .....+. +|...+.+++|+| ++..|++++
T Consensus 88 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-----CCSSCEEEEEEETTEEEEEEEEE
T ss_pred --cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-----CCCCcEEEEEEEcCCCCEEEEEe
Confidence 677788899999999999999999999999999999999987 5555554 5667899999999 899999999
Q ss_pred CCCcEEEEECCCCceeeEecCCC-CCeEEEEECC--CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC
Q 009763 377 SEALVKIWDVKSQANVAKFDGHV-GAVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 452 (526)
.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.++ |++||+++++.+..+..+ ...+.+++|+|
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~ 238 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHP 238 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECS
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcC
Confidence 99999999999888877776554 8899999999 999999999998 999999999988888765 67899999999
Q ss_pred CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCE-EEEEeCCCcEEEeeCCCCC
Q 009763 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY-IAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 453 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~l~~~~ 521 (526)
++.+|++++.+ +++|++ ..+.....+..+ ...+.+++|+|++.. +++++.|+.+.+|++....
T Consensus 239 ~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNS----STYKVEKTLNVG--LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp SSSEEEEEETTSCEEEEET----TTCSEEEEECCS--SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred CCCEEEEEeCCCeEEEEEC----CCCcEEEEeecC--CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999987 999997 445666677665 678999999999873 2444457778999986543
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-35 Score=289.55 Aligned_cols=252 Identities=22% Similarity=0.341 Sum_probs=219.5
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (526)
+....+.+|.+.|++++|+|++++|++|+.||+|++||..+. .....+..|...|.+++|+|++.++++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 456678899999999999999999999999999999998876 55666778889999999999999999999999999
Q ss_pred EEeCCCCe------EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECC
Q 009763 336 FYDLSSGI------CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE 409 (526)
Q Consensus 336 iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 409 (526)
+|++.... ....+. .|...|.++.|+|++..|++++.||.|++||+++++.+..+.+|...|.++.|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVA-----MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEE-----ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred EEEEeccccccccccceeee-----ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 99986531 122222 5667899999999999999999999999999999999999999999999999988
Q ss_pred --CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecC
Q 009763 410 --NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 410 --~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~ 484 (526)
+|.+|++++.|+ |++||+++++.+..+..+ ...|.+++|+|++.+|++|+.| +++|++. ....+..+..
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~----~~~~~~~~~~ 280 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLR----ADREVAIYSK 280 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT----TTEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEECC----CCcEEEEEcC
Confidence 478999999998 999999999988888665 6789999999999999999998 9999983 3344445544
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 485 LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 485 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+.+...+.+++|+|++++|++|+.||.|++||+..+.
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 4345578999999999999999999999999997653
No 55
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.4e-35 Score=298.67 Aligned_cols=282 Identities=21% Similarity=0.404 Sum_probs=240.4
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
.+..|..+|+|+.+ ++++|++|+.||.|++||..+++....+.+|...|.+++| ++++|++|+.||+|++||+.++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 35567788999987 6899999999999999999999999999999999999999 7889999999999999999886
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
+.+..+.+|...|.++.|+ ++++++|+.||.|++||+.++........ ..+|...|.+++| ++.++++|+.
T Consensus 204 ---~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 204 ---EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp ---CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEE--ECCCSSCEEEEEE--ETTEEEEEET
T ss_pred ---cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeE--ecCCCCcEEEEEe--CCCEEEEEeC
Confidence 6778888999999999996 56999999999999999998765532111 2266788999999 7889999999
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
||.|++||+++++.+..+.+|...|.++.| ++.++++|+.|+ |++||+++++.+..+..+ ...+.++.| ++.+
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKR 348 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC--CSSE
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe--cCCE
Confidence 999999999999999999999999999999 567999999998 999999999998888765 678999998 7899
Q ss_pred EEEEeCC--eEEEEEecccCc-----ceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 457 LAVASAD--IRVYQVASVKAD-----WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
|++|+.| +++|++...... ...+..+..| .+.|++++| ++.+|++|+.||.|++||+..+..
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999988 999998543311 1155666665 778999999 788999999999999999987653
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-35 Score=290.33 Aligned_cols=280 Identities=13% Similarity=0.144 Sum_probs=237.9
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---EEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEe
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---IVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQ 293 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd 293 (526)
+...|.+.|++++|+|++++|++|+.||.|++|++.++. ....+.+|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 456789999999999999999999999999999998877 3455568999999999999999 999999999999999
Q ss_pred C-CCCCceeeeEeccc--CccceEEEEEecCCCEEEEEECCCeEEEEeCCC---------CeEEEEeecCCCCCCCCCee
Q 009763 294 G-SEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---------GICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 294 ~-~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v~ 361 (526)
+ .++ ....+.+ |...|.+++|+| +++|++++.|+.|++||+++ ++.+..+ .+...+.
T Consensus 86 ~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~v~ 154 (342)
T 1yfq_A 86 LIGSP----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT------KVKNKIF 154 (342)
T ss_dssp SSSSS----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS------SSCCCEE
T ss_pred eccCC----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE------eeCCceE
Confidence 9 774 3366778 999999999999 99999999999999999886 4433322 3567899
Q ss_pred EEEEccCCcEEEEEeCCCcEEEEECCC-Cce--eeEecCCCCCeEEEEECC-CCCEEEEEeCCc-EEEEEcCCC------
Q 009763 362 SAAFHPDGLILGTGTSEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKL------ 430 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~------ 430 (526)
+++|+|++ +++++.||.|++||+++ +.. ......+...|.+++|+| ++.+|++++.++ |++||++..
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99999987 89999999999999998 543 334456788999999999 999999999998 999999887
Q ss_pred ccceEEecCCC-------CCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC
Q 009763 431 KNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 501 (526)
Q Consensus 431 ~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 501 (526)
+....+..+.. ...|.+++|+|++++|++++.+ +++|++ .....+..+..| |...|.+++ |+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~----~~~~~~~~~~~~-h~~~v~~~~--~~~~ 305 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL----QTRKKIKNFAKF-NEDSVVKIA--CSDN 305 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEECCCC-SSSEEEEEE--ECSS
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC----ccHhHhhhhhcc-cCCCceEec--CCCC
Confidence 67777776532 3489999999999999999988 999997 456667776654 267899999 9999
Q ss_pred EEEEEeCCCc-EEEeeC
Q 009763 502 YIAVGSMDRN-LRVFGL 517 (526)
Q Consensus 502 ~l~s~~~dg~-v~iw~l 517 (526)
+|++|+.||. .+.|..
T Consensus 306 ~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEEEECTHHHHCSSS
T ss_pred eEEEEecCCcccccccc
Confidence 9999999999 555554
No 57
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=279.75 Aligned_cols=277 Identities=18% Similarity=0.335 Sum_probs=232.0
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
..+|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++||+.++ +++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---eeE
Confidence 5689999875 777765 9999999999999887664 67888999999999999999999999999999987 788
Q ss_pred EecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEE
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 383 (526)
..+.+|...+.++.+ ++..+++++.++.+.+|+........... .+|...+..+.+++++.++++++.||.|++
T Consensus 103 ~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL----SGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176 (318)
T ss_dssp EEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE----cCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence 888899998887665 57899999999999999998765443332 166788999999999999999999999999
Q ss_pred EECCCCce----eeEecCCCCCeEEEEECCCCC-EEE--EEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 384 WDVKSQAN----VAKFDGHVGAVTAISFSENGY-YLA--TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 384 wd~~~~~~----~~~~~~~~~~i~~l~~s~~~~-~l~--~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
||+++++. ......+.+.|.++.++|++. .+. +++.++ |++||.+.......... ...+..+.|+|++.
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYK 253 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTTT
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc---eeeeeeeeeccccc
Confidence 99988753 344556788999999999754 333 344556 99999998877666554 56799999999999
Q ss_pred EEEEEe--CC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 456 YLAVAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 456 ~l~~~~--~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
.+++++ .| ++||++ .+...+..+.+| .+.|++++|+|+|++|++|+.||+|+|||+.+.+|
T Consensus 254 ~~~~~sg~~d~~i~iwd~----~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKY----PTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp EEEEEECTTTCCEEEEET----TTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred ceEEEEEcCCCEEEEEEC----CCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 988765 34 999998 566778888876 78999999999999999999999999999977654
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.8e-35 Score=281.53 Aligned_cols=252 Identities=16% Similarity=0.216 Sum_probs=208.0
Q ss_pred EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec--CCCEEEEEECCCeEEE
Q 009763 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCF 336 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~i 336 (526)
..+.+|...|++++|+|+|++|++|+.|++|+|||+... ..+.+..+.+|.+.|++++|++ ++++|++|+.||+|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 457789999999999999999999999999999998753 2256778899999999999976 3899999999999999
Q ss_pred EeCCCCe--EEEEeecCCCCCCCCCeeEEEEccC--CcEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECCC
Q 009763 337 YDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSEN 410 (526)
Q Consensus 337 wd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~ 410 (526)
||++++. .+..+. .|...|.+++|+|+ +.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~-----~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 82 WKEENGRWSQIAVHA-----VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEBSSSCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEcCCCceEEEEEee-----cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 9998874 233332 56788999999997 8999999999999999998763 24567789999999999997
Q ss_pred -------------CCEEEEEeCCc-EEEEEcCCCc----cceEEecCCCCCCeeEEEEcCCC---CEEEEEeCC--eEEE
Q 009763 411 -------------GYYLATAAHDG-VKLWDLRKLK----NFRSFESSDSETPTNSVDFDHSG---SYLAVASAD--IRVY 467 (526)
Q Consensus 411 -------------~~~l~~~~~d~-i~iwd~~~~~----~~~~~~~~~~~~~i~~i~~s~~~---~~l~~~~~d--i~v~ 467 (526)
+.+|++++.|+ |++||++++. ....+.. |...|.+++|+|++ .+|++++.| ++||
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 57999999998 9999998766 3334444 47799999999985 899999998 9999
Q ss_pred EEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 468 QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
++......+.. ..+....+...|.+++|+|++++|++++.||.|++|+...
T Consensus 235 d~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEE-EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccce-eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98543222221 1222223477899999999999999999999999999864
No 59
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.3e-36 Score=295.11 Aligned_cols=242 Identities=17% Similarity=0.253 Sum_probs=205.4
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~----~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
..|...|++++|+|++.+ ++++.||+|+|||+.+++... ...+|...|++++|+|++++|++|+.||+|++||+.
T Consensus 91 ~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 357789999999998765 557789999999998876543 345899999999999999999999999999999998
Q ss_pred CCCceeeeEecccCccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC-CcEEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILG 373 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 373 (526)
++ .++..+.+|...|++++|+|++. ++++++.||.|++||+++++....+. ...+...+.+++|+|+ +.+|+
T Consensus 170 ~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 170 QK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp TT---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEE
T ss_pred CC---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccccccccchhhhhcccceEE
Confidence 86 78888899999999999999875 78999999999999999988766554 2245678999999996 57899
Q ss_pred EEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 451 (526)
+|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++.|+ |+|||+++++.+..+ .|...|++++|+
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafs 320 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWS 320 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEEC
T ss_pred EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEe
Confidence 99999999999999999999999999999999999987 6789999998 999999998776544 347899999999
Q ss_pred C-CCCEEEEEeCC--eEEEEEec
Q 009763 452 H-SGSYLAVASAD--IRVYQVAS 471 (526)
Q Consensus 452 ~-~~~~l~~~~~d--i~v~~~~~ 471 (526)
| ++.+|++++.| +++|++..
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCCEEEEEcCCCeEEEEECCC
Confidence 8 79999999988 99999854
No 60
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-35 Score=293.11 Aligned_cols=284 Identities=16% Similarity=0.181 Sum_probs=220.6
Q ss_pred CCeEEEEecCCCCEEEEEeCCC-------cEEEEeCCCCcE----------EEEecccccceeEEEEecCCCEEEEEe--
Q 009763 224 PGIVSLDIHYSKDVIATGGVDT-------NAVLFDRPSGQI----------VTTLSGHSKKVTSVKFVTEGDLFLTGS-- 284 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg-------~v~vwd~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~l~s~s-- 284 (526)
-+|+|++|+|++++|++||.+. .|++|++..+.. ...+.+|...|.++++ +++.+++|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 3799999999999999997543 599999865421 2346788888988876 456666653
Q ss_pred ---------CCCcEEEEeCCCCCc-eeeeEec-----ccCccceEEEEEecCCCEEEEEE--CCCeEEEEeCCCCeEEEE
Q 009763 285 ---------ADKTVRVWQGSEDGN-YDCKHTL-----KDHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQ 347 (526)
Q Consensus 285 ---------~dg~i~iwd~~~~~~-~~~~~~~-----~~h~~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~ 347 (526)
.|+.+++|++..... ....... ..+...+.+++|+|+|+++++++ .|++|++||+++++.+..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 577899998765432 1222211 23445689999999999987654 689999999999998888
Q ss_pred eecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeE--ecCCCCCeEEEEECCCCCEEEEEeCCc----
Q 009763 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAHDG---- 421 (526)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~d~---- 421 (526)
+. |...|.+++|+|||+++++++. +.+.+|+..++..+.. ...|...|.+++|+|++.++++++.++
T Consensus 173 ~~------~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 173 IE------TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EE------CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred eC------CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 74 3457999999999999999985 5577777777765543 355788899999999999999988663
Q ss_pred -EEEEEcCCCccc--eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeee-cCCCCCcceEEEE
Q 009763 422 -VKLWDLRKLKNF--RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTGKATCVK 495 (526)
Q Consensus 422 -i~iwd~~~~~~~--~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 495 (526)
+++||+...... .......+...|++++|+|+|++|++|+.| |+||++ .+...+..+ .+| ...|++++
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~----~~~~~~~~~~~gH--~~~V~~v~ 319 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL----KDLSMSKIFKQAH--SFAITEVT 319 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET----TTTEEEEEETTSS--SSCEEEEE
T ss_pred EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC----CCCcEEEEecCcc--cCCEEEEE
Confidence 678888765432 222233346789999999999999999998 999997 556777665 455 88999999
Q ss_pred EcCCCCEEEEEeCCCcEEEeeCCCCCC
Q 009763 496 FGPDAKYIAVGSMDRNLRVFGLPGNDA 522 (526)
Q Consensus 496 ~s~~~~~l~s~~~dg~v~iw~l~~~~~ 522 (526)
|+|||++||+|+.|++|+||+++.+-.
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 999999999999999999999986644
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-34 Score=283.40 Aligned_cols=245 Identities=18% Similarity=0.298 Sum_probs=205.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
...+|...|.+++|+|++.++++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+...
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred CceeeeEecccCccceEEEEEecCC----------CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATN----------KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
. ........+|...|.+++|+|++ .+|++++.||.|++||. .......+. +|...|.+++|+|
T Consensus 151 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-----~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 151 C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-----AHESNVNHLSISP 223 (343)
T ss_dssp E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-----CCSSCEEEEEECT
T ss_pred c-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-----CccccceEEEECC
Confidence 1 11111223789999999999987 79999999999999994 455555554 6678999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCC-CceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccce--EEecC-----
Q 009763 368 DGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESS----- 439 (526)
Q Consensus 368 ~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~--~~~~~----- 439 (526)
+|.+|++|+.||.|++||++. ......+. +...|.+++|+|++.+++++++++|++||+.+.+... .+...
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 999999999999999999954 34444443 4567999999999999988876679999998876554 33211
Q ss_pred ----CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 440 ----DSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 440 ----~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
.+...+.+++|+|+|++|++|+.| +++|++.
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 345679999999999999999998 9999974
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=312.21 Aligned_cols=288 Identities=11% Similarity=0.075 Sum_probs=222.7
Q ss_pred cCCCCCeEEEEecCC------CCEEEEEeCCCcEEEEeCCCCcE-----------EEEecccccceeEEEEecCCCEEEE
Q 009763 220 KTSKPGIVSLDIHYS------KDVIATGGVDTNAVLFDRPSGQI-----------VTTLSGHSKKVTSVKFVTEGDLFLT 282 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~------~~~l~t~~~dg~v~vwd~~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s 282 (526)
.+|.+.|.+++|+|+ +.+||+|+.||+|++||+..+.. ...+.+|...|++++|++++ .|++
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence 456788999999996 57999999999999999976532 24678899999999999864 8999
Q ss_pred EeCCCcEEEEeCCCCCceeeeEecccCccceEEE--EEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 009763 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV--TVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (526)
|+.||+|++||+.++. .....+.+|...|+++ .|+|++ .+|++++.|++|++||+++++....+.... ....
T Consensus 283 gs~DgtV~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~---~~~~ 357 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF---RGSN 357 (524)
T ss_dssp EETTSEEEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC---SCCS
T ss_pred EeCCCEEEEEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc---ccCc
Confidence 9999999999998642 3345577899999999 567887 899999999999999999877655543211 1124
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
+.+++|+|++..+++++.|+.|++||++++..+..+.+|.+.|++++|+|+|.+|++|+.|+ |++||+... .+.....
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~ 436 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKN 436 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC--
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hcccccc
Confidence 78999999999999999999999999999998888889999999999999999999999998 999998653 3222111
Q ss_pred C---CCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC---EEEEEeCCCcE
Q 009763 439 S---DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK---YIAVGSMDRNL 512 (526)
Q Consensus 439 ~---~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~v 512 (526)
. .....+.+++|+|+|..+. ...+..+|.+. .....+..+.+| ...|.+++|+|++. .|++|+.||.|
T Consensus 437 ~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~---~~g~~~~~l~gh--~~~V~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 437 SSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLT---VNDVSKAKIDAH--GINITCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp ----CCCCEEEECBCCSSSCEEE-ECCCCCCCC----------------C--CCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred CccceeeeEEEEeccCCCCCeEE-ccCCceecccc---cCCcceeeecCC--CceEEEEECCCCCCccHHHHhhccCceE
Confidence 0 0122467899999998553 23334444431 123445556655 78999999999954 99999999999
Q ss_pred EEeeCCCC
Q 009763 513 RVFGLPGN 520 (526)
Q Consensus 513 ~iw~l~~~ 520 (526)
+||++...
T Consensus 511 rlw~l~~~ 518 (524)
T 2j04_B 511 TLEYLSLE 518 (524)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99999764
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.1e-35 Score=333.63 Aligned_cols=286 Identities=19% Similarity=0.328 Sum_probs=257.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.+.|++++|+|+++++++|+.||.|++||..+++.+..+.+|...|.+++|+|++++|++|+.||+|++||+.++
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~- 689 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG- 689 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
..+..+.+|...|.+++|+| ++.++++++.||.|++||+.++..+..+. +|...|.+++|+|++.++++|+
T Consensus 690 --~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 690 --KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-----GHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-----CCSSCEEEEEECSSTTEEEEEE
T ss_pred --ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-----CCCCCEEEEEEecCCCEEEEEE
Confidence 67888889999999999999 55689999999999999999999888775 6778999999999999999999
Q ss_pred CCCcEEEEECCCCceeeEecC-------------CCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCC
Q 009763 377 SEALVKIWDVKSQANVAKFDG-------------HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
.||.|++||++++.....+.. ....+.+++|+|+|..+++++.+.+.+||+.++.....+... +..
T Consensus 763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~-~~~ 841 (1249)
T 3sfz_A 763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG-HHS 841 (1249)
T ss_dssp SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECS-SSS
T ss_pred CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCC-CCC
Confidence 999999999998877666532 233688999999999999998766999999999888777632 367
Q ss_pred CeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
.+.+++|+|++.++++++.+ +++|++ .....+..+.+| ...|++++|+|++++|++++.||.|++|++..
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNI----DSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEET----TTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEc----CCCceeeecCCC--ccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 89999999999999999998 999998 455667777765 78999999999999999999999999999753
No 64
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=284.02 Aligned_cols=242 Identities=21% Similarity=0.393 Sum_probs=197.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-------CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
.|...|.+++|+|++++|++|+.|++|++||... .+.+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3889999999999999999999999999999843 356778899999999999999999999999999999999
Q ss_pred CCCC-CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC--eEEEEeecCCCCCCCCCeeEEEEccC--
Q 009763 294 GSED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPD-- 368 (526)
Q Consensus 294 ~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~-- 368 (526)
+... ....++..+.+|...|.+++|+|++.+|++++.|++|++||+.++ ..+..+. +|...|.+++|+|+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-----GHEGTVWSSDFDKTEG 210 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCSSS
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-----CCCCcEEEEEecCCCC
Confidence 9532 334677888899999999999999999999999999999998876 4455553 67789999999998
Q ss_pred CcEEEEEeCCCcEEEEECCCC--------ceeeEecC-CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc--ceEE
Q 009763 369 GLILGTGTSEALVKIWDVKSQ--------ANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSF 436 (526)
Q Consensus 369 ~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~ 436 (526)
+.+|++|+.|+.|++||++.+ .....+.. |...|.+++|++++ +|++++.|+ |++||..++.. ....
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 779999999999999998764 33444544 88899999999765 788888888 99999987642 2222
Q ss_pred ecCCCCC-CeeEEEEcC--CCCEEEEEeCC--eEEEEE
Q 009763 437 ESSDSET-PTNSVDFDH--SGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 437 ~~~~~~~-~i~~i~~s~--~~~~l~~~~~d--i~v~~~ 469 (526)
...+.. .+.+++|+| ++.+|++|+.| ++||++
T Consensus 290 -~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 290 -ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp -SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred -ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 222344 899999999 78999999998 999987
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-35 Score=287.32 Aligned_cols=260 Identities=18% Similarity=0.338 Sum_probs=210.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecccccceeEEEEec--CCCEEEEEeCCCcEEEEe
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd 293 (526)
+..+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456799999999999999999999999999999998764 4678899999999999975 488999999999999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC---
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--- 368 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 368 (526)
+.++ .......+.+|...|++++|+|+ +.+|++|+.|+.|++||+..+....... ...+|...+.+++|+|+
T Consensus 88 ~~~~-~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENG-TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK--INNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSS-CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC--BTTSSSSCBCCCEECCCCCC
T ss_pred CCCC-cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee--eeccccCCcceEEEccccCC
Confidence 9764 22456677899999999999997 7899999999999999998764222111 13367788999999997
Q ss_pred --------------CcEEEEEeCCCcEEEEECCCC---ceeeEecCCCCCeEEEEECCCC----CEEEEEeCCc-EEEEE
Q 009763 369 --------------GLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKLWD 426 (526)
Q Consensus 369 --------------~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~~----~~l~~~~~d~-i~iwd 426 (526)
+.+|++|+.|+.|++||++.. +.+..+.+|...|.+++|+|++ .+|++++.|+ |++||
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 468999999999999999765 4667788999999999999986 8999999998 99999
Q ss_pred cCCCc----cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 427 LRKLK----NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 427 ~~~~~----~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
++... ....+..+ ...|.+++|+|++.+|++++.| +++|+.... ..|.++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~-g~~~~~~~~~ 304 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESVD-GQWVCISDVN 304 (316)
T ss_dssp CSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECTT-SCEEEEEECC
T ss_pred ccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC-CcEEEeeecc
Confidence 98632 12233333 6789999999999999999988 999997432 2355555443
No 66
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-34 Score=287.42 Aligned_cols=242 Identities=24% Similarity=0.429 Sum_probs=213.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++ .+
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~---~~ 199 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---QC 199 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EE
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC---ee
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999886 55
Q ss_pred eEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecC--CCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 303 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDA--GTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
...+. +...+.+++|+| ++++|++|+.||.|++||++++..+..+... ...+|...|.+++|+|++.+|++|+.||
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 55554 567899999999 8999999999999999999999887766321 1236788999999999999999999999
Q ss_pred cEEEEECCCC------------ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCee
Q 009763 380 LVKIWDVKSQ------------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 446 (526)
Q Consensus 380 ~i~iwd~~~~------------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~ 446 (526)
.|++||+++. .....+.+|...|.+++|+|++.+|++++.|+ |++||+++++.+..+..| ...|.
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~ 356 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVI 356 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEE
Confidence 9999999763 34556778999999999999999999999998 999999999988888776 67899
Q ss_pred EEEEcC------CCCEEEEEeCC--eEEEEEe
Q 009763 447 SVDFDH------SGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 447 ~i~~s~------~~~~l~~~~~d--i~v~~~~ 470 (526)
+++|++ ++.+|++|+.| ++||++.
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999876 68999999998 9999984
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-33 Score=287.53 Aligned_cols=275 Identities=23% Similarity=0.522 Sum_probs=240.9
Q ss_pred ccCCCCCe-EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 219 HKTSKPGI-VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 219 ~~~~~~~I-~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
..+|.+.| +++. +++++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +++|++|+.||+|++||+.++
T Consensus 114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence 45676654 5554 468999999999999999999999999999999999999997 679999999999999999886
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
+.+..+.+|...|.++.|+ ++++++|+.||.|++||+.+++.+..+. +|...+.++.| ++.++++|+.
T Consensus 190 ---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 190 ---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-----GHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp ---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-----CCSSCEEEEEE--CSSCEEEEET
T ss_pred ---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-----CCcccEEEEEE--CCCEEEEEcC
Confidence 7788889999999999996 6789999999999999999999888876 56678999999 7889999999
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 456 (526)
||.|++||+++++.+..+.+|...|.++.| ++.++++++.|+ |++||+++++.+..+..+ ...+.++.+ ++.+
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMEL--KDNI 331 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEE--ETTE
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC--cccEEEEEE--eCCE
Confidence 999999999999999999999999999999 788999999998 999999999988888765 567777776 4679
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeeecCC-CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTFPDL-SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+++|+.| +++|++ .....+..+..+ .|...|++++|+ +++|++|+.||.|++|++..++
T Consensus 332 l~~~~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 332 LVSGNADSTVKIWDI----KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEEEETTSCEEEEET----TTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEeCCCeEEEEEC----CCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 9999988 999998 445566666553 257889999995 6899999999999999998764
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4e-34 Score=302.32 Aligned_cols=291 Identities=16% Similarity=0.214 Sum_probs=238.0
Q ss_pred cccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccccc---ceeEEEEecC-CCEEEEEeCCCcEEEE
Q 009763 218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTE-GDLFLTGSADKTVRVW 292 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~---~V~~l~~~~~-~~~l~s~s~dg~i~iw 292 (526)
....|...|++++|+|+++ ++++++.||.|++||..+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++|
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3457889999999999998 899999999999999999999999999999 9999999999 9999999999999999
Q ss_pred eCCCCCceeeeEec-c---cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC----------------
Q 009763 293 QGSEDGNYDCKHTL-K---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---------------- 352 (526)
Q Consensus 293 d~~~~~~~~~~~~~-~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------- 352 (526)
|+.++ +.+..+ . .|...|.++.|+ ++.+|++++.||.|++||+++++.+..+....
T Consensus 235 d~~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (615)
T 1pgu_A 235 DGKSG---EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 310 (615)
T ss_dssp ETTTC---CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred ECCCC---CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCC
Confidence 99886 566777 5 899999999999 99999999999999999999887665554220
Q ss_pred ------------------------CCC---------------------------------CCCCeeEEEEc---------
Q 009763 353 ------------------------TDG---------------------------------RPEGYTSAAFH--------- 366 (526)
Q Consensus 353 ------------------------~~~---------------------------------~~~~v~~~~~~--------- 366 (526)
..+ |...|.+++|.
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 390 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 390 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence 011 22223333331
Q ss_pred -------------------------cC--------------------------------------CcEEEEEeC-CCcEE
Q 009763 367 -------------------------PD--------------------------------------GLILGTGTS-EALVK 382 (526)
Q Consensus 367 -------------------------~~--------------------------------------~~~l~~g~~-dg~i~ 382 (526)
|+ +.++++++. ||.|+
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 11 344555555 66666
Q ss_pred EEECCCCcee-eEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcC--------
Q 009763 383 IWDVKSQANV-AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH-------- 452 (526)
Q Consensus 383 iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~-------- 452 (526)
+||+.+++.. ..+..|...|++++|+|++.+|++++.|+ |++||+.+++.+..+... +...|++++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-CCCceeEEEEcCcccccccc
Confidence 6666655443 55667889999999999999999999998 999999998887766541 378999999999
Q ss_pred --CCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 453 --SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 453 --~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
++.+|++++.| +++|++... ...+..+..| ...|++++|+|+++ |++++.||.|++|++..
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h--~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVKRP---MKIIKALNAH--KDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCT---TCCEEETTSS--TTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ccCCCEEEEEcCCCcEEEEECCCC---ceechhhhcC--ccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999988 999998432 1556666665 78999999999999 99999999999999874
No 69
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-35 Score=294.87 Aligned_cols=264 Identities=23% Similarity=0.355 Sum_probs=220.2
Q ss_pred EEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEE
Q 009763 249 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA 328 (526)
Q Consensus 249 vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 328 (526)
.|+........++.+|.+.|++++|+|++++|++|+.||+|+|||+.++ .....+..|...|.+++|+|++++|++|
T Consensus 50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 4555566677889999999999999999999999999999999999886 6778888999999999999999999999
Q ss_pred ECCCeEEEEeCCCCeEEEEe--ecCCCCCCCCCeeEEEEccC-CcEEEEEeCCCcEEEEECCCCceeeEe-----cCCCC
Q 009763 329 SLDNTWCFYDLSSGICLTQV--SDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKF-----DGHVG 400 (526)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~~~~ 400 (526)
+.|+.+++||+.+....... ......+|...+.++.|+|+ +..|++|+.|+.|++||+++++.+..+ .+|..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 99999999999754211000 00113377888999999996 567999999999999999999988777 57888
Q ss_pred CeEEEEECC-CCCEEEEEeCCc-EEEEEcCC-CccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCc
Q 009763 401 AVTAISFSE-NGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 475 (526)
Q Consensus 401 ~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 475 (526)
.|.++.|++ ++.+|++|+.|+ |++||++. ...+..+..+ ...|.+++|+|++.+|++|+.| +++|++ ..
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~----~~ 280 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDM----RT 280 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSCEEEEET----TT
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCeEEEEEC----CC
Confidence 999999987 889999999998 99999984 4666666655 6789999999999999999998 999998 34
Q ss_pred ceeeeeecCCC-----CCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 476 WNCIKTFPDLS-----GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 476 ~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
...+..+..+. +...|++++|+|+|++|++|+.||.|++||+..++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 44555444321 12358999999999999999999999999986543
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.4e-34 Score=327.44 Aligned_cols=293 Identities=21% Similarity=0.368 Sum_probs=253.0
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEec--CCCEEEEEeCCCcEEEEeCCCC
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
..|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||+.++
T Consensus 654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 46889999999999999999999999999999999999999999999999999999 5568999999999999999886
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC-------------------------
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG------------------------- 352 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------------------- 352 (526)
.+...+.+|...|++++|+|+++++++++.||.|++||+.++.....+....
T Consensus 734 ---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 734 ---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 6778888999999999999999999999999999999998887655543110
Q ss_pred -------------------------CCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEE
Q 009763 353 -------------------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF 407 (526)
Q Consensus 353 -------------------------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 407 (526)
..+|...+.+++|+|++.++++++.||.|++||+.++..+..+.+|...|++++|
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 0155678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCc-EEEEEcCCCcc-----------------------------ceEEecC------CCCCCeeEEEEc
Q 009763 408 SENGYYLATAAHDG-VKLWDLRKLKN-----------------------------FRSFESS------DSETPTNSVDFD 451 (526)
Q Consensus 408 s~~~~~l~~~~~d~-i~iwd~~~~~~-----------------------------~~~~~~~------~~~~~i~~i~~s 451 (526)
+|+|.+|++++.|+ |++||+.+... ....... .....+.+++|+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 99999999999998 99999753210 0000000 014578999999
Q ss_pred CCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 452 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|++.++++|+.+ +.+|++ ........+..| ...|++++|+|+|++|++++.||.|++|++..+.
T Consensus 971 p~g~~l~~g~~~g~i~i~d~----~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIEL----PNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEET----TTTSCEEECCCC--SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred CCCCEEEEEcCCCCEEEEEc----CCCceeeecccC--CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 999999999998 999997 344455566554 7899999999999999999999999999997653
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.6e-35 Score=293.46 Aligned_cols=287 Identities=20% Similarity=0.281 Sum_probs=234.0
Q ss_pred eEEEEecCCCCE-EEEEeCCCcEEEEeCCCC----cEEEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 226 IVSLDIHYSKDV-IATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 226 I~~~~~s~~~~~-l~t~~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
...++++|+... +++++.||.|+||++... ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 446788887654 445788999999998654 23456779999999999999 999999999999999999987532
Q ss_pred e----eeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 300 Y----DCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 300 ~----~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
. ..+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+. ...|...|.+++|+|++.+|++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEE
Confidence 1 3566778999999999999998 699999999999999999999888773 1256789999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeEe-cCCCCC-eEEEEECCCCCEEEEE---eCCc-EEEEEcCCCccceEEecCCCCCCeeEE
Q 009763 375 GTSEALVKIWDVKSQANVAKF-DGHVGA-VTAISFSENGYYLATA---AHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~l~~s~~~~~l~~~---~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 448 (526)
++.||.|++||+++++.+..+ ..|.+. +.++.|+|++.+|+++ +.++ |++||++++..........+...+.++
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence 999999999999999999888 677765 8999999999999999 6777 999999987763333333346779999
Q ss_pred EEcCCCCEEEEEe-CC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 449 DFDHSGSYLAVAS-AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 449 ~~s~~~~~l~~~~-~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.|+|++.+|++++ .| +++|++...... +..+..+.+...|.+++|+|++.++++ .++.+++|++..+
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~---~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPF---LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEECSSTTC---EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEecCCCcc---eEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 9999999997654 45 999999543321 223333334688999999999998775 4679999998764
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-33 Score=285.61 Aligned_cols=278 Identities=21% Similarity=0.436 Sum_probs=245.2
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.+.|++++|+ ++++++|+.||.|++||+.+++.+..+.+|...|.++.|+ ++.+++|+.||+|++||+.++
T Consensus 155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~- 229 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG- 229 (445)
T ss_dssp CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-
T ss_pred EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-
Confidence 45788999999998 6799999999999999999999999999999999999995 678999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
+.+..+.+|...|.++.| +++++++++.||.|++||+++++.+..+. +|...+.++.| ++.++++|+.|
T Consensus 230 --~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~d 298 (445)
T 2ovr_B 230 --QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSLD 298 (445)
T ss_dssp --CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----CCSSCEEEEEE--CSSEEEEEETT
T ss_pred --cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-----CCCCceEEEEE--CCCEEEEEeCC
Confidence 677788899999999999 78899999999999999999999888875 56678999999 78999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC-CCCCeeEEEEcCCCCE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSY 456 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-~~~~i~~i~~s~~~~~ 456 (526)
|.|++||+++++.+..+.+|...+.++.+ ++.+|++++.|+ |++||+++++.+..+..+. +...|.+++|+ +.+
T Consensus 299 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 299 TSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp SCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred CeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence 99999999999999999999999999888 466999999998 9999999999888887632 46789999995 689
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeee---cCCCCCcceEEEEEcCCCCEEEEEeCCCc----EEEeeCCCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTF---PDLSGTGKATCVKFGPDAKYIAVGSMDRN----LRVFGLPGN 520 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~----v~iw~l~~~ 520 (526)
|++|+.| +++|++. ....+..+ ....+.+.|.+++|+|++.+|++|+.||. |.+||+...
T Consensus 375 l~s~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLK----TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETTSEEEEEETT----TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEeCCCeEEEEECC----CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999988 9999983 34444444 22234788999999999999999999998 999999865
No 73
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=280.76 Aligned_cols=286 Identities=17% Similarity=0.203 Sum_probs=233.8
Q ss_pred ccccCCCCCeEEEEecCC---CCEEEEEeCCCcEEEEeCCC-CcEE-EEecccccceeEEEEecCCCEEEEEeCCCcEEE
Q 009763 217 PLHKTSKPGIVSLDIHYS---KDVIATGGVDTNAVLFDRPS-GQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (526)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~---~~~l~t~~~dg~v~vwd~~~-~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 291 (526)
.....|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 356789999999999999 59999999999999999987 5554 788899999999999999999999999999999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEE--ecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
||+.++ .... +..|...|++++| +|++++|++++.||.|++||+++++.+..+... ..+.++.+. +
T Consensus 113 wd~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~~~~~--~ 180 (368)
T 3mmy_A 113 WDLSSN---QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP------ERCYCADVI--Y 180 (368)
T ss_dssp EETTTT---EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS------SCEEEEEEE--T
T ss_pred EEcCCC---Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC------CCceEEEec--C
Confidence 999885 3333 5679999999999 889999999999999999999999888877632 345566655 4
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEe--cCCCCCeEEEEECCCCCE----EEEEeCCc-EEEEEcCCC---ccceEEecC
Q 009763 370 LILGTGTSEALVKIWDVKSQANVAKF--DGHVGAVTAISFSENGYY----LATAAHDG-VKLWDLRKL---KNFRSFESS 439 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~----l~~~~~d~-i~iwd~~~~---~~~~~~~~~ 439 (526)
..+++++.++.+.+||++........ ..+...+.++.+.+++.. +++++.++ |++||++.. .....+..+
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 57888889999999999876543332 223445666666655443 99999998 999999987 445555554
Q ss_pred CCC----------CCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 440 DSE----------TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 440 ~~~----------~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
... ..+.+++|+|++++|++++.| +++|++ .....+..+..| ...|++++|+|++++|++++
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK----DARTKLKTSEQL--DQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEECCCC--SSCEEEEEECTTSSCEEEEE
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC----CCCcEEEEecCC--CCCceEEEECCCCCeEEEEe
Confidence 211 169999999999999999988 999998 456677777765 78999999999999999999
Q ss_pred CCCcEEEeeCCCC
Q 009763 508 MDRNLRVFGLPGN 520 (526)
Q Consensus 508 ~dg~v~iw~l~~~ 520 (526)
.|+..+.|++-..
T Consensus 335 ~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 335 SYDWSKGHEFYNP 347 (368)
T ss_dssp CCCSTTCGGGCCT
T ss_pred cccccccccccCC
Confidence 9987777776543
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-33 Score=285.09 Aligned_cols=280 Identities=21% Similarity=0.336 Sum_probs=238.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEec--CCCEEEEEeCCCcEEEEeCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~ 296 (526)
..+|.+.|++++|++++ ++++|+.||+|++||+.+++.+..+.+|...|.+++|++ ++.+|++|+.||+|++||+.+
T Consensus 158 ~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp ECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 35789999999999887 999999999999999999999999999999999999994 778999999999999999987
Q ss_pred CCcee--------------------eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC
Q 009763 297 DGNYD--------------------CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 356 (526)
Q Consensus 297 ~~~~~--------------------~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 356 (526)
..... ....+.+|...|.++ +++++++++++.||.|++||+.+++.+..+. +|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~ 309 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-----GH 309 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CC
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CC
Confidence 53211 255677899999887 5679999999999999999999999888875 56
Q ss_pred CCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceE
Q 009763 357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS 435 (526)
Q Consensus 357 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~ 435 (526)
...+.+++|+|++.++++|+.||.|++||+++++.+..+.+|...|.++.|+ +.+|++++.|+ |++||+++......
T Consensus 310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence 7899999999999999999999999999999999999999999999999997 57999999998 99999998876655
Q ss_pred EecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 009763 436 FESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 436 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 514 (526)
... ...+..++|++++.++++|+.+ +++|++ .....+..+.. .+...|.+++|+ +..++++++.||.+.+
T Consensus 388 ~~~---~~~~~~~~~~~~~~~l~~~~dg~i~iwd~----~~g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 388 YHH---TNLSAITTFYVSDNILVSGSENQFNIYNL----RSGKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp EEC---TTCCCEEEEEECSSEEEEEETTEEEEEET----TTCCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ecC---CCCccEEEEEeCCCEEEEecCCeEEEEEC----CCCcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 543 5678889999999999999966 999998 44555554222 247899999997 4455666677776665
Q ss_pred eeC
Q 009763 515 FGL 517 (526)
Q Consensus 515 w~l 517 (526)
|-+
T Consensus 459 ~~l 461 (464)
T 3v7d_B 459 EIL 461 (464)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.7e-35 Score=282.82 Aligned_cols=250 Identities=18% Similarity=0.228 Sum_probs=199.4
Q ss_pred EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec--CCCEEEEEECCCeEEEE
Q 009763 260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFY 337 (526)
Q Consensus 260 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iw 337 (526)
.+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++. ...+..+.+|...|++++|++ ++++|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 456899999999999999999999999999999997642 235677889999999999975 48999999999999999
Q ss_pred eCCCCe--EEEEeecCCCCCCCCCeeEEEEccC--CcEEEEEeCCCcEEEEECCCCce---eeEecCCCCCeEEEEECCC
Q 009763 338 DLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSEN 410 (526)
Q Consensus 338 d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~ 410 (526)
|++++. ....+. +|...|.+++|+|+ +.+|++|+.||.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 87 REENGTWEKSHEHA-----GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp CCSSSCCCEEEEEC-----CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred ECCCCcceEEEEcc-----CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence 999874 333332 67789999999997 88999999999999999987632 3455778889999999997
Q ss_pred -----------------CCEEEEEeCCc-EEEEEcCCCc---cceEEecCCCCCCeeEEEEcCCC----CEEEEEeCC--
Q 009763 411 -----------------GYYLATAAHDG-VKLWDLRKLK---NFRSFESSDSETPTNSVDFDHSG----SYLAVASAD-- 463 (526)
Q Consensus 411 -----------------~~~l~~~~~d~-i~iwd~~~~~---~~~~~~~~~~~~~i~~i~~s~~~----~~l~~~~~d-- 463 (526)
+.+|++++.|+ |++||++... ....+.. |...|.+++|+|++ .+|++++.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 46899999998 9999997653 3333433 47789999999987 899999999
Q ss_pred eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 464 IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 464 i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
++||++............+.. +...|.+++|+|++++|++++.||.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998542111111112222 367899999999999999999999999999763
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=309.94 Aligned_cols=208 Identities=12% Similarity=0.153 Sum_probs=180.6
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
+.+|.+.|++++|+|++++||+|+.||.|+||+....+....+. |...|.+++|+| +++|++++.|++|++||+.++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~- 89 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ- 89 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-
Confidence 45788999999999999999999999999999998877666554 788999999999 889999999999999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec-------CCCCCCCCCeeEEEEccC-Cc
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-------AGTDGRPEGYTSAAFHPD-GL 370 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~-~~ 370 (526)
+++..+. |...|++++|+|+++++++|+.||.|++||++++... .+.. ....+|...|.+++|+|+ +.
T Consensus 90 --~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 90 --KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp --SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred --cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCC
Confidence 5556664 6789999999999999999999999999999998764 2111 223477889999999995 57
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEecCC------------------CCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCc
Q 009763 371 ILGTGTSEALVKIWDVKSQANVAKFDGH------------------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 431 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~ 431 (526)
.+++|+.||.| +||+++++.+..+..| ...|++++|+|+|.+|++++.|+ |++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999 9999999988888655 46799999999999999999998 9999998876
Q ss_pred cce
Q 009763 432 NFR 434 (526)
Q Consensus 432 ~~~ 434 (526)
.+.
T Consensus 245 ~~~ 247 (902)
T 2oaj_A 245 MIM 247 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-33 Score=298.37 Aligned_cols=287 Identities=18% Similarity=0.216 Sum_probs=249.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecccccc-eeEEEEec--CCCEEEEEeCCCcEEE
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKK-VTSVKFVT--EGDLFLTGSADKTVRV 291 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~----~~~~~~~~h~~~-V~~l~~~~--~~~~l~s~s~dg~i~i 291 (526)
...|.+.|++++|+|++++|++++ ++.|++||+.++ +....+.+|... |++++|+| ++++|++|+.||.|++
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 456788999999999999999998 889999999998 899999999999 99999999 9999999999999999
Q ss_pred EeCCCCC-----ceeeeEecccCccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 292 WQGSEDG-----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 292 wd~~~~~-----~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
||+.++. .......+..|...|.+++|+|+++++++++.+ +.|.+|| .++.+..+. +|...|.+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-----~~~~~v~~ 165 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-----GHSQRINA 165 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC-----SCSSCEEE
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee-----cCCccEEE
Confidence 9996420 225667778899999999999999999999988 7888888 455555553 67789999
Q ss_pred EEEccCCc-EEEEEeCCCcEEEEECCCCceeeEecCCCC---CeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEE
Q 009763 363 AAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKFDGHVG---AVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 363 ~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~ 436 (526)
++|+|++. ++++++.||.|++||+.+++.+..+.+|.. .|.+++|+|+ +.+|++++.++ |++||+++++.+..+
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 99999997 899999999999999999999999999998 9999999999 99999999998 999999999888777
Q ss_pred ecC--CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCC--CCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 437 ESS--DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 437 ~~~--~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
... .+...+.++.|+ ++.+|++++.+ +++|++ .....+..+..+ .....+.++.|+ ++.++++++.||
T Consensus 246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g 319 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV----TTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG 319 (615)
T ss_dssp CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET----TTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC----CCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence 221 337889999999 99999999988 999998 345555555543 124678888886 889999999999
Q ss_pred cEEEeeCCC
Q 009763 511 NLRVFGLPG 519 (526)
Q Consensus 511 ~v~iw~l~~ 519 (526)
.|++|++..
T Consensus 320 ~i~~~d~~~ 328 (615)
T 1pgu_A 320 TLNFYELGH 328 (615)
T ss_dssp CEEEEETTE
T ss_pred CEEEEECCC
Confidence 999999875
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=282.32 Aligned_cols=250 Identities=21% Similarity=0.335 Sum_probs=215.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecccccceeEEEEecC--CCEEEEEeCCCcEEEEe
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd 293 (526)
...+|...|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 456799999999999999999999999999999997 56778889999999999999976 89999999999999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc----
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---- 367 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 367 (526)
+.++ .......+..|...|.+++|+|+ +.+|++++.||.|++||+.++....... ...|...+.+++|+|
T Consensus 86 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 86 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEEEECCCC--
T ss_pred cCCC-ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEEEEcCcccc
Confidence 9875 22367777889999999999999 9999999999999999999874333222 125667899999999
Q ss_pred ---------CCcEEEEEeCCCcEEEEECCCCc----eeeEecCCCCCeEEEEECCC---CCEEEEEeCCc-EEEEEcCCC
Q 009763 368 ---------DGLILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSEN---GYYLATAAHDG-VKLWDLRKL 430 (526)
Q Consensus 368 ---------~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~d~-i~iwd~~~~ 430 (526)
++.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+ +.+|++++.|+ |++||++.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998764 44567889999999999999 89999999998 999999987
Q ss_pred ccc---eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEec
Q 009763 431 KNF---RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 471 (526)
Q Consensus 431 ~~~---~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~ 471 (526)
... ..+....+...+.+++|+|+|.+|++++.+ +++|++..
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 532 222223346789999999999999999888 99999863
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-33 Score=305.83 Aligned_cols=292 Identities=18% Similarity=0.292 Sum_probs=248.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
...|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.++.
T Consensus 51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (814)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred ceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc--CCcEEEEE
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTG 375 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g 375 (526)
.....+.+|...|.+++|+| +++.|++++.||.|++||+.++.....+.. .+...+.+++|+| ++.+|++|
T Consensus 131 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----GQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp --EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC----CCTTCCCEEEECCSTTCCEEEEE
T ss_pred --eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec----CCCCCEEEEEEEECCCCCEEEEE
Confidence 55667788999999999999 889999999999999999998877766652 3346899999999 99999999
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+.+++....+..+ ...+.+++|+|+|
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTG 282 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECTTC
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEccCC
Confidence 9999999999999999999999999999999999999999999998 999999999888888765 5789999999998
Q ss_pred C--EEEEEeCC-eEEEEEecccC------cceeeeee-------------------------------cCCCCCcceEEE
Q 009763 455 S--YLAVASAD-IRVYQVASVKA------DWNCIKTF-------------------------------PDLSGTGKATCV 494 (526)
Q Consensus 455 ~--~l~~~~~d-i~v~~~~~~~~------~~~~~~~~-------------------------------~~~~~~~~v~~~ 494 (526)
. ++++++.+ +.+|++..... ....+... ....+...+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred CceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 7 67777776 88887643211 00111000 001123457889
Q ss_pred EEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 495 KFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 495 ~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+|+|+|++|++++ ||.+.+|++..
T Consensus 363 ~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 363 AHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCCCCEEEEec-CCEEEEEECcc
Confidence 9999999999888 88999998754
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=310.41 Aligned_cols=292 Identities=17% Similarity=0.184 Sum_probs=218.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-----------EEecccccceeEEEEecC-CCEEEEEeCCCcE
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-----------TTLSGHSKKVTSVKFVTE-GDLFLTGSADKTV 289 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~-----------~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i 289 (526)
|...|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|.+.|++++|+|+ +..|++|+.||.|
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence 5678999999999999999999999999999987754 234679999999999996 5789999999999
Q ss_pred EEEeCCCCCceeeeEecccC------------------ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 009763 290 RVWQGSEDGNYDCKHTLKDH------------------TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351 (526)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~~h------------------~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (526)
+||+.++ +++..+..| ...|++++|+|+|.+|++++.||.|++||+++++.+......
T Consensus 177 -lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 177 -TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp -EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred -EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence 9999886 555555544 578999999999999999999999999999998876542110
Q ss_pred CCC-------------CCCCCeeEEEEc----cCC-cEEEEEeC------------------------------------
Q 009763 352 GTD-------------GRPEGYTSAAFH----PDG-LILGTGTS------------------------------------ 377 (526)
Q Consensus 352 ~~~-------------~~~~~v~~~~~~----~~~-~~l~~g~~------------------------------------ 377 (526)
... .+...|.+++|+ |++ .++++|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 000 123467888884 332 44555533
Q ss_pred ----------------------------------------CCcEEEEECCCCceeeE-----------------------
Q 009763 378 ----------------------------------------EALVKIWDVKSQANVAK----------------------- 394 (526)
Q Consensus 378 ----------------------------------------dg~i~iwd~~~~~~~~~----------------------- 394 (526)
||.|++||+.++.....
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 34455555543322111
Q ss_pred ------------------ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccc--eEEe--c-----CCCCCCee
Q 009763 395 ------------------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF--RSFE--S-----SDSETPTN 446 (526)
Q Consensus 395 ------------------~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~--~~~~--~-----~~~~~~i~ 446 (526)
+.+|...+.+++|+|++.+|++|+.|+ |++||+..+... ..+. . ..+...|.
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~ 492 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD 492 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence 112222333445578899999999999 999999887432 1121 0 13467899
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEEecccC-----------------------------------------cceeeeeec
Q 009763 447 SVDFDHSGSYLAVASAD--IRVYQVASVKA-----------------------------------------DWNCIKTFP 483 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~d--i~v~~~~~~~~-----------------------------------------~~~~~~~~~ 483 (526)
+++|+|+|++|++|+.| ++||++..... .+.++..+.
T Consensus 493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 572 (902)
T 2oaj_A 493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH 572 (902)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence 99999999999999998 99999965421 013455666
Q ss_pred CCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 484 DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 484 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.| .+.|++++|+||| +||+|+.||+|++||+.+.
T Consensus 573 ~h--~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 573 AN--KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp CC--SCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred cC--CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 64 8899999999999 9999999999999998764
No 81
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=282.20 Aligned_cols=271 Identities=16% Similarity=0.242 Sum_probs=216.4
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC------ceeee
Q 009763 230 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG------NYDCK 303 (526)
Q Consensus 230 ~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~ 303 (526)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+..... ....+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888776 567888999987 9999999999999766320 01223
Q ss_pred Eec-ccCccceEEEEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCc
Q 009763 304 HTL-KDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (526)
Q Consensus 304 ~~~-~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 380 (526)
..+ .+|...|.+++|+| +++++++++.||+|++||+++++....... .+...+.+++|+|++.+|++|+.||.
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA----KSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC----CSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec----CCCCceEEEEECCCCCEEEEEcCCCE
Confidence 333 36778999999999 999999999999999999999988655532 34457999999999999999999999
Q ss_pred EEEEECCCCcee-eEecC-CCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCC-CCCCe--eEEEEcCCCC
Q 009763 381 VKIWDVKSQANV-AKFDG-HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD-SETPT--NSVDFDHSGS 455 (526)
Q Consensus 381 i~iwd~~~~~~~-~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~-~~~~i--~~i~~s~~~~ 455 (526)
|++||+++++.+ ..+.. |.+.|++++|+|+|.+|++++++.|++||+++.+....+.... +...+ .+++|+|+|+
T Consensus 194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 999999999887 78887 9999999999999999999996669999999988765544310 11223 4699999999
Q ss_pred EEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC---CCCEEEEEeCCCcEEEeeCCC
Q 009763 456 YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP---DAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 456 ~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+|++++. + ++||++......|.. ..+..+.|++ +...|++++.||.+.++-..+
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKNWTK----------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCSEEE----------EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEEEecCCCCcEEEEEEcccccceEe----------cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 9999776 5 999999665555554 3566777877 888888888899888875443
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-33 Score=302.38 Aligned_cols=245 Identities=23% Similarity=0.391 Sum_probs=215.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|...|.+++|+|++++|++|+.||.|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||.....
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999986642
Q ss_pred ceeeeEecccCccceEEEEEecCC--CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
.........+|...|.+++|+|++ ..+++++.|++|++||+++++....+. +|...|.+++|+|++.+|++|+
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEe
Confidence 222222235789999999999986 689999999999999999998887775 6778999999999999999999
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCC---------------
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDS--------------- 441 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~--------------- 441 (526)
.||.|++||+++++.+..+.. ...|.+++|+|++.+|+++++++|++||++++..+..+..+..
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659 (694)
T ss_dssp TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence 999999999999998887764 4689999999999999998887899999999887766643211
Q ss_pred --CCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 442 --ETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 442 --~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
...+++++|+|+|++|++|+.| ++||++
T Consensus 660 ~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 660 RKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp -CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 1237889999999999999999 999987
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-33 Score=276.07 Aligned_cols=258 Identities=17% Similarity=0.221 Sum_probs=212.5
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCC
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDN 332 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg 332 (526)
|+.+..+.+|...|++++|+|++++|++|+.||.|++||+... .......+.+|...|++++|+++ +++|++++.||
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 3456678899999999999999999999999999999999742 23677788899999999999877 89999999999
Q ss_pred eEEEEeCCCCe--EEEEeecCCCCCCCCCeeEEEEccC--CcEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCeEEEE
Q 009763 333 TWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAIS 406 (526)
Q Consensus 333 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~ 406 (526)
.|++||+.+++ .+..+. .|...+.+++|+|+ +.+|++++.||.|++||++++. ....+..|...|.+++
T Consensus 80 ~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHA-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp CEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEEEEEcCCCceeEeeeec-----CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 99999999987 333332 56789999999998 9999999999999999998873 3445678999999999
Q ss_pred ECC-------------CCCEEEEEeCCc-EEEEEcCCCccceE--EecCCCCCCeeEEEEcCC---CCEEEEEeCC--eE
Q 009763 407 FSE-------------NGYYLATAAHDG-VKLWDLRKLKNFRS--FESSDSETPTNSVDFDHS---GSYLAVASAD--IR 465 (526)
Q Consensus 407 ~s~-------------~~~~l~~~~~d~-i~iwd~~~~~~~~~--~~~~~~~~~i~~i~~s~~---~~~l~~~~~d--i~ 465 (526)
|+| ++.+|++++.|+ |++||++....... .....+...|.+++|+|+ +.+|++++.| ++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 999 699999999998 99999987654321 122334778999999999 8999999988 99
Q ss_pred EEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 466 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 466 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+|++....... ....+....+...|++++|+|++++|++++.||.|++|++..
T Consensus 235 iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 235 IWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEESSTTSCC-EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEeCCCCCccc-eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 99985533221 122223333578899999999999999999999999999873
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=282.82 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=230.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---EEEEecc-------------------------------------
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---IVTTLSG------------------------------------- 263 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~---~~~~~~~------------------------------------- 263 (526)
.+|.+++|+++|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 378999999999976666 57899999999988 6555543
Q ss_pred -----------------cccceeEEEEecCCCEE-EEEeCCCcEEEEeCC--CCCceeeeEecc--cCccceEEEEEecC
Q 009763 264 -----------------HSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGS--EDGNYDCKHTLK--DHTAEVQAVTVHAT 321 (526)
Q Consensus 264 -----------------h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~~~~--~h~~~v~~l~~~p~ 321 (526)
|.+.|++++|+|++++| ++|+.||.|++||+. ++ .++..+. .|...|++++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK---NVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS---SCEEEEEEEECSSCEEEEEECTT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC---ceeeeeecccCCCCceEEEEcCC
Confidence 33379999999999996 899999999999998 54 3444444 57789999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEE-EeecCCCCCCCCCeeEEEEccC---CcEEEEEeCCCcEEEEECCCCceeeE-ec
Q 009763 322 NKYFVTASLDNTWCFYDLSSGICLT-QVSDAGTDGRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQANVAK-FD 396 (526)
Q Consensus 322 ~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~-~~ 396 (526)
+++|++++.||.+++|++.++.... ... ...+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+.. +.
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQE--PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCC--CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccce--eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence 9999999999999999998876543 000 12256788999999999 99999999999999999999988877 56
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecC-----------------------CCCCCeeEEEEcC
Q 009763 397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------------------DSETPTNSVDFDH 452 (526)
Q Consensus 397 ~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----------------------~~~~~i~~i~~s~ 452 (526)
+|...|.+++|+ ++.+|++++.|+ |++||+++++.+..+..+ .....+..+.|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 899999999999 999999999998 999999999887777632 1245789999999
Q ss_pred CCCEEEEEe-CC--eEEEEE-ecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC------CCcEEEeeCCCC
Q 009763 453 SGSYLAVAS-AD--IRVYQV-ASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM------DRNLRVFGLPGN 520 (526)
Q Consensus 453 ~~~~l~~~~-~d--i~v~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~l~~~ 520 (526)
++++|++++ .+ ++||++ +........+..+..+ +.|.+++|+|++.++++++. +..|.+|.+...
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999998 55 999998 2222334556666553 68999999996544444443 556899987543
No 85
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=288.62 Aligned_cols=277 Identities=17% Similarity=0.280 Sum_probs=222.6
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCC---CCceeeeEe
Q 009763 231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSE---DGNYDCKHT 305 (526)
Q Consensus 231 ~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~ 305 (526)
|+|++..+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +........
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 677777777654 388 457888888 89999999999999 999999999999999999865 322233333
Q ss_pred cccCccceEEEEEecCCCEEEEEECCCeEEEEeCC---CCeEEEEeecC-------CCCCCCCCeeEEE--EccCCcEEE
Q 009763 306 LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---SGICLTQVSDA-------GTDGRPEGYTSAA--FHPDGLILG 373 (526)
Q Consensus 306 ~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~-------~~~~~~~~v~~~~--~~~~~~~l~ 373 (526)
+ +|...|++++|+|++++|++++.||.|++||++ +++........ ...++...+.++. +++++.+|+
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 3 599999999999999999999999999999995 44433322210 0001445677777 668999999
Q ss_pred EEeCCCcEEEEECCCCceeeEecC--CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEE
Q 009763 374 TGTSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 450 (526)
+|+.||.|++||+++++.+..+.. |.+.|++++|+|++.+|++++.|+ |++||+++++.+..+... +...|.+++|
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~ 265 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEV 265 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEE
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEEEe
Confidence 999999999999999999999988 889999999999999999999999 999999998888877632 2468999955
Q ss_pred c----CCCCEEEEEeCC--eEEEEEecccCcceeeeeecCC------------------------CCCcceEEEEEcCCC
Q 009763 451 D----HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL------------------------SGTGKATCVKFGPDA 500 (526)
Q Consensus 451 s----~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~ 500 (526)
+ +++.+|++|+.| +++|++. ....+..+..+ .|...|++++|+ ++
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFV----KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETT----TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcC----CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 5 568899999998 9999983 33334333322 156779999999 88
Q ss_pred CEEEEEeCCCcEEEeeCCCCC
Q 009763 501 KYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 501 ~~l~s~~~dg~v~iw~l~~~~ 521 (526)
++|++|+.||.|++||+..++
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCGG
T ss_pred eEEEecCCCCeEEEEECCCcc
Confidence 999999999999999998764
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-33 Score=277.09 Aligned_cols=244 Identities=16% Similarity=0.293 Sum_probs=212.7
Q ss_pred CCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 009763 221 TSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 221 ~~~~~I~~~~~s~~----~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~ 295 (526)
.|...|++++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 36788999999998 67999999999999999999999999999999999999999 89999999999999999998
Q ss_pred CCCceeeeEec---ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec----------------------
Q 009763 296 EDGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD---------------------- 350 (526)
Q Consensus 296 ~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------------- 350 (526)
++ +....+ .+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 147 ~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 147 TD---TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TT---EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred cC---eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 86 555555 68999999999999999999999999999999987754332210
Q ss_pred -CCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce--------------eeEecCCCCCeEEEEECCC--CCE
Q 009763 351 -AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--------------VAKFDGHVGAVTAISFSEN--GYY 413 (526)
Q Consensus 351 -~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~l~~s~~--~~~ 413 (526)
.....|...|.+++|+ +.++++++.||.|++||++++.. +..+..|...|++++|+|+ +.+
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM 301 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence 0012377889999999 77999999999999999987644 6777889999999999999 999
Q ss_pred EEEEeCCc-EEEEEcCCCccce----EEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 414 LATAAHDG-VKLWDLRKLKNFR----SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~~~~~~----~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
|++++.++ |++||+++++... .+..+.+...|.+++|+|++++|++++.| +++|++
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 99999998 9999999887554 55555446899999999999999999998 899986
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-32 Score=272.22 Aligned_cols=242 Identities=17% Similarity=0.256 Sum_probs=214.5
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
..|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+....
T Consensus 131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~- 207 (401)
T 4aez_A 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN- 207 (401)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc-
Confidence 347889999999999999999999999999999999999999999999999999 56799999999999999998543
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-cEEEEEe--
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGT-- 376 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~-- 376 (526)
.....+.+|...|.+++|+|++++|++++.||.|++||+.++..+..+. .|...|.+++|+|++ .++++|+
T Consensus 208 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 208 -HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-----NHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-----CCSSCCCEEEECTTSTTEEEEECCT
T ss_pred -ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-----CCcceEEEEEECCCCCCEEEEecCC
Confidence 5667778899999999999999999999999999999999998887775 566789999999965 6667765
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe--CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
.||.|++||+++++.+..+. +...|.+++|+|++.+|++++ .++ |++||+.++..........+...|.+++|+|+
T Consensus 282 ~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 282 MDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred CCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence 79999999999999988886 567899999999999999954 677 99999998776666554455789999999999
Q ss_pred CCEEEEEeCC--eEEEEEec
Q 009763 454 GSYLAVASAD--IRVYQVAS 471 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~ 471 (526)
|.+|++++.| +++|++..
T Consensus 361 g~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC
T ss_pred CCEEEEEeCCCcEEEEECCC
Confidence 9999999988 99999843
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.6e-32 Score=268.05 Aligned_cols=246 Identities=15% Similarity=0.157 Sum_probs=211.3
Q ss_pred ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCC
Q 009763 261 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 340 (526)
Q Consensus 261 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~ 340 (526)
+..|..+|++++|+|++++|++|+.||.|++||+.++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 4458899999999999999999999999999999874 223778888999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce---eeE-ecCCCCCeEEEEECCCCCEEEE
Q 009763 341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN---VAK-FDGHVGAVTAISFSENGYYLAT 416 (526)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~-~~~~~~~i~~l~~s~~~~~l~~ 416 (526)
+++...... ...|...+.+++|+|++.+|++++.||.|++||++.+.. ... ...|...|.+++|+|++.+|++
T Consensus 83 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 83 GRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCeeeeeEE---eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 988665554 225678899999999999999999999999999988763 233 3567889999999999999999
Q ss_pred EeCCc-EEEEEcC------------------CCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCc
Q 009763 417 AAHDG-VKLWDLR------------------KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 475 (526)
Q Consensus 417 ~~~d~-i~iwd~~------------------~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 475 (526)
++.++ |++||++ .++.+..+..+ ...+.+++|+|++.+|++++.| +++|++ ..
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~~ 233 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAWVSHDSTVCLADA----DK 233 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEEEETTTEEEEEEG----GG
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEEEeCCCEEEEEEC----CC
Confidence 99998 9999964 45555555443 6789999999999999999988 999998 34
Q ss_pred ceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 476 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 476 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
...+..+..+ ...|.+++|+|++.+|++| .||.|++|++..
T Consensus 234 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 5566667665 6789999999999988887 899999999977
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=288.70 Aligned_cols=269 Identities=10% Similarity=0.047 Sum_probs=200.2
Q ss_pred CCCCeEEEEecCCC---------CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 222 SKPGIVSLDIHYSK---------DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 222 ~~~~I~~~~~s~~~---------~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++.|++++.|++|+||
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iW 188 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIF 188 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEE
Confidence 46789999999987 799998866420 0136899999999999999999
Q ss_pred eCCCCCc-eeeeEecccCccceEEEEEecC------CCEEEEEECCCeEEEEeCCCCeEE----EEeec--CCCCCCCCC
Q 009763 293 QGSEDGN-YDCKHTLKDHTAEVQAVTVHAT------NKYFVTASLDNTWCFYDLSSGICL----TQVSD--AGTDGRPEG 359 (526)
Q Consensus 293 d~~~~~~-~~~~~~~~~h~~~v~~l~~~p~------~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~--~~~~~~~~~ 359 (526)
|+.++.. ......+.+|.+.|.+++|+|+ +.+|++++.||+|++||+..+... ..... ....+|...
T Consensus 189 d~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 189 KMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp EEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred EccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 9876532 1122445678889999999996 579999999999999999876421 00000 001256789
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEE--EECCCC-CEEEEEeCCc-EEEEEcCCCccce
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAI--SFSENG-YYLATAAHDG-VKLWDLRKLKNFR 434 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l--~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~ 434 (526)
|.+++|++++ .|++|+.||+|++||++++ .+...+.+|...|+++ .|+|+| .+|++++.|+ |+|||+++++...
T Consensus 269 v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~ 347 (524)
T 2j04_B 269 ITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK 347 (524)
T ss_dssp EEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred EEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence 9999999864 7999999999999999976 4456688999999999 578888 8999999998 9999999988877
Q ss_pred EEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 435 SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
.+..+.....+.+++|+|++..+++++.+ +++|++. ...++..+.+| .+.|++++|+|+|++|++|+.||+|
T Consensus 348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT----CTTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEE
T ss_pred ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc----ccccceeeecC--CCceEEEEeCCCCCeEEEEECCCEE
Confidence 77655333458899999999999998888 9999973 34444555554 7899999999999999999999999
Q ss_pred EEeeCCCC
Q 009763 513 RVFGLPGN 520 (526)
Q Consensus 513 ~iw~l~~~ 520 (526)
++|++...
T Consensus 422 ~lwd~~~~ 429 (524)
T 2j04_B 422 IITNAARR 429 (524)
T ss_dssp ECCBSCSS
T ss_pred EEEechHh
Confidence 99998643
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.8e-32 Score=271.36 Aligned_cols=248 Identities=17% Similarity=0.250 Sum_probs=215.0
Q ss_pred cCCCCCeEEEEecCC----C---CEEEEEeCCCcEEEEeCCCCcE-----EEEeccc-----ccceeEEEEe----cCCC
Q 009763 220 KTSKPGIVSLDIHYS----K---DVIATGGVDTNAVLFDRPSGQI-----VTTLSGH-----SKKVTSVKFV----TEGD 278 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~----~---~~l~t~~~dg~v~vwd~~~~~~-----~~~~~~h-----~~~V~~l~~~----~~~~ 278 (526)
..|...|++++|+|+ + ++|++++.||.|++||+.+++. ...+..| ...|.+++|+ |+++
T Consensus 59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 468889999999999 9 9999999999999999998876 8888888 5899999999 9999
Q ss_pred E-EEEEeCCCcEEEEeCCC------CCcee--eeEec-------ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC
Q 009763 279 L-FLTGSADKTVRVWQGSE------DGNYD--CKHTL-------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 342 (526)
Q Consensus 279 ~-l~s~s~dg~i~iwd~~~------~~~~~--~~~~~-------~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~ 342 (526)
+ |++++.||.|++||+.. ..... ....+ ..|...|.+++|+|++ ++++++.||.|++||++++
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9 99999999999999987 42211 11144 4588999999999999 9999999999999999999
Q ss_pred eEEEEeecCCCCCC---CCCeeEEEEccCCcEEEEEeCC---CcEEEEECCCCceeeEecC-------------CCCCeE
Q 009763 343 ICLTQVSDAGTDGR---PEGYTSAAFHPDGLILGTGTSE---ALVKIWDVKSQANVAKFDG-------------HVGAVT 403 (526)
Q Consensus 343 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~ 403 (526)
+.+..+... ..| ...+.+++|+|++.+|++++.| |.|++||+++++.+..+.. |...|.
T Consensus 218 ~~~~~~~~~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 218 RPLYNFESQ--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp EEEEEEECC--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred ceeEEEecc--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence 988887620 125 6789999999999999999999 9999999999999999988 999999
Q ss_pred EEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEe------cC-------------CCCCCeeEEEEcCCC---------
Q 009763 404 AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE------SS-------------DSETPTNSVDFDHSG--------- 454 (526)
Q Consensus 404 ~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~------~~-------------~~~~~i~~i~~s~~~--------- 454 (526)
+++|+|++.+|++++.|+ |++||+++++.+..+. .+ .+...|.+++|+|+|
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 999999999999999998 9999999999988887 32 015789999999998
Q ss_pred -CEEEEEeCC--eEEEEEe
Q 009763 455 -SYLAVASAD--IRVYQVA 470 (526)
Q Consensus 455 -~~l~~~~~d--i~v~~~~ 470 (526)
.+|++++.| +++|++.
T Consensus 376 ~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp SCEEEEEETTTEEEEEEEE
T ss_pred cceEEEecCCCcEEEEEcC
Confidence 799999988 9999984
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.6e-32 Score=269.05 Aligned_cols=262 Identities=18% Similarity=0.206 Sum_probs=208.3
Q ss_pred EeCCCCcEEEEecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec-CCCEEEE
Q 009763 250 FDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVT 327 (526)
Q Consensus 250 wd~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s 327 (526)
|++........+.+|...|++++|+|++ ++|++|+.||.|++||+.+... .......+|...|.+++|+| ++++|++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 3344556677788999999999999998 8999999999999999987532 23333347999999999999 7799999
Q ss_pred EECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEE
Q 009763 328 ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF 407 (526)
Q Consensus 328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 407 (526)
++.|+.|++||+.+. .+..+.. ...+...+.+++|+|++.+|++|+.||.|++||+ +++.+..+..|...|.+++|
T Consensus 137 ~~~d~~i~iwd~~~~-~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS-VIQVFAK--TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp EETTTEEEEEETTSC-EEEEEEC--CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred EeCCCEEEEEECCCC-ceEEEec--cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 999999999999964 4444432 2245578999999999999999999999999999 57788889999999999999
Q ss_pred CCCCC-EEEEEeCCc-EEEEEcCC----CccceEEecCCCCCCeeEEEEcC-CCCEEEEEeCC--eEEEEEecccCccee
Q 009763 408 SENGY-YLATAAHDG-VKLWDLRK----LKNFRSFESSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASVKADWNC 478 (526)
Q Consensus 408 s~~~~-~l~~~~~d~-i~iwd~~~----~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d--i~v~~~~~~~~~~~~ 478 (526)
+|++. +|++++.|+ |++||+++ ...+..+. +...+.+++|+| ++.+|++++.| +++|++.........
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 99998 999999998 99999998 44444442 367999999999 99999999988 999998543322221
Q ss_pred eeeec---CC--------CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 479 IKTFP---DL--------SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 479 ~~~~~---~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..... .+ ...+.+..++|+|++++ +|+.||.|++||+..++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 11100 00 01234556777888777 78899999999997654
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1e-31 Score=271.53 Aligned_cols=255 Identities=21% Similarity=0.354 Sum_probs=209.7
Q ss_pred EEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCC-------CceeeeEecccCccceEEEEEecCCC-EEEEEE
Q 009763 259 TTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSED-------GNYDCKHTLKDHTAEVQAVTVHATNK-YFVTAS 329 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s 329 (526)
.....|.+.|++++|+|+ +.+|++++.||.|++|++... +.......+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445579999999999997 679999999999999998751 12356777789999999999999988 999999
Q ss_pred CCCeEEEEeCCCCeE----EEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCC---ceeeEecCCCCC
Q 009763 330 LDNTWCFYDLSSGIC----LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGA 401 (526)
Q Consensus 330 ~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~ 401 (526)
.||.|++||+..+.. +.... ....|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKN--IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSE--EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred CCCeEEEEeCCCCCCCCceeccce--eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 999999999987432 11010 0226778899999999 7889999999999999999987 577778889999
Q ss_pred eEEEEECCCCC-EEEEEeCCc-EEEEEcCC-CccceEEecCCCCCCeeEEEEcCCCC-EEEEEeCC--eEEEEEecccCc
Q 009763 402 VTAISFSENGY-YLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKAD 475 (526)
Q Consensus 402 i~~l~~s~~~~-~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~ 475 (526)
|++++|+|++. +|++|+.++ |++||+++ ...+..+..+ ...|.++.|+|++. +|++++.+ ++||++......
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 99999999886 788999998 99999998 4566777665 67999999999995 68888877 999998652211
Q ss_pred ----------ceeeeeecCCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEeeCCC
Q 009763 476 ----------WNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 476 ----------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~l~~ 519 (526)
...+..+.+| ...|.+++|+|++. +|++++.||.|+||++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 2344555554 77899999999999 899999999999999864
No 93
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=269.44 Aligned_cols=241 Identities=21% Similarity=0.290 Sum_probs=213.7
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce-
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY- 300 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 300 (526)
|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++...
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 677999999999999999999999999999 668889999999999999999999999999999999999998764211
Q ss_pred ----------------------------------------------------eeeEecccCccceEEEEEecCCCEEEEE
Q 009763 301 ----------------------------------------------------DCKHTLKDHTAEVQAVTVHATNKYFVTA 328 (526)
Q Consensus 301 ----------------------------------------------------~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 328 (526)
.....+..|...|.+++|+|++++|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 1122445688899999999999999999
Q ss_pred ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEEC
Q 009763 329 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (526)
+.||.|++||+.+++.+..+. .|...+.+++|+|++ ++++++.||.|++||+++++.+..+..|...|.+++|+
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred cCCCEEEEEECCCCccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence 999999999999988777774 566789999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCc-EEEEEcCCCc--------------------cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eE
Q 009763 409 ENGYYLATAAHDG-VKLWDLRKLK--------------------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IR 465 (526)
Q Consensus 409 ~~~~~l~~~~~d~-i~iwd~~~~~--------------------~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~ 465 (526)
|++.+|++++.++ |++||+++++ .+..+..+.....|.+++|+|++++|++++.+ ++
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence 9999999999998 9999999877 66666655212289999999999999999988 99
Q ss_pred EEEE
Q 009763 466 VYQV 469 (526)
Q Consensus 466 v~~~ 469 (526)
+|++
T Consensus 420 iw~~ 423 (425)
T 1r5m_A 420 VVAI 423 (425)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9987
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-33 Score=275.85 Aligned_cols=246 Identities=15% Similarity=0.145 Sum_probs=197.1
Q ss_pred ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCC
Q 009763 261 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 340 (526)
Q Consensus 261 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~ 340 (526)
+..+.++|++++|+|++++|++|+.||.|++||+.++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 3446778999999999999999999999999999864 235667788999999999999999999999999999999999
Q ss_pred CCe---EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc---eeeEecC-CCCCeEEEEECCCCCE
Q 009763 341 SGI---CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA---NVAKFDG-HVGAVTAISFSENGYY 413 (526)
Q Consensus 341 ~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~-~~~~i~~l~~s~~~~~ 413 (526)
++. ....+ ..|...|.+++|+|++.+|++|+.|+.|++||+++++ ....+.. |...|.+++|+|++.+
T Consensus 86 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 86 PDGTWKQTLVL-----LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ---CCCCEEEC-----CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred CCCceeeeeEe-----cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 876 33333 2677899999999999999999999999999999887 3677777 9999999999999999
Q ss_pred EEEEeCCc-EEEEEcCC------------------CccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecc
Q 009763 414 LATAAHDG-VKLWDLRK------------------LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 472 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~------------------~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~ 472 (526)
|++++.|+ |++||++. ++.+..+ .+...|.+++|+|++++|++++.| +++|++...
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99999998 99999963 2233333 447889999999999999999998 999999654
Q ss_pred cCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 473 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
......+..+..| ...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 238 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 4333335666665 7789999999999999999866655 67665
No 95
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-31 Score=258.94 Aligned_cols=247 Identities=23% Similarity=0.401 Sum_probs=215.7
Q ss_pred EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEE
Q 009763 257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (526)
Q Consensus 257 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (526)
....+.+|...|++++|+|++++|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 34568899999999999999999999999999999999886 677888899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC-----CcEEEEECCCCc-----------eeeEecCCCC
Q 009763 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQA-----------NVAKFDGHVG 400 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~ 400 (526)
||+.+++.+..+. +...+.+++|+|++.++++++.+ |.|++||+.... ....+..+.+
T Consensus 101 wd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 101 WDVSNGQCVATWK------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EETTTCCEEEEEE------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EECCCCcEEEEee------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 9999999888875 34689999999999999999999 999999997653 3334445555
Q ss_pred --CeEEEEECCCCCEEEEEeCCc-EEEEEcCC-CccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccC
Q 009763 401 --AVTAISFSENGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKA 474 (526)
Q Consensus 401 --~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~ 474 (526)
.+.+++|+|++.+|++++.++ |++||+++ ......+..+ ...+.+++|+|++.+|++++.+ +++|++ .
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~----~ 248 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH--EKSISDMQFSPDLTYFITSSRDTNSFLVDV----S 248 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEET----T
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC--CCceeEEEECCCCCEEEEecCCceEEEEEC----C
Confidence 899999999999999999998 99999998 6777777665 6789999999999999999988 999997 4
Q ss_pred cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC--------------cEEEeeCCCCC
Q 009763 475 DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR--------------NLRVFGLPGND 521 (526)
Q Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~v~iw~l~~~~ 521 (526)
....+..+. +...+.+++|+|+++++++++.++ .+++|++..+.
T Consensus 249 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 249 TLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp TCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 445555554 267899999999999999999998 89999987654
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.6e-32 Score=272.36 Aligned_cols=247 Identities=19% Similarity=0.292 Sum_probs=212.3
Q ss_pred cccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEecccccceeEEEEecCC-CEEEEEeCCCc
Q 009763 218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKT 288 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~ 288 (526)
...+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++|+.||.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 3567899999999999 8999999999999999999987 5678889999999999999998 69999999999
Q ss_pred EEEEeCCCCCceeeeEec--ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC-CeeEEEE
Q 009763 289 VRVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAF 365 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 365 (526)
|++||+.++ ..+..+ .+|...|.+++|+|++++|++++.||.|++||+++++.+..+.. .|.. .+.++.|
T Consensus 156 i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~ 228 (402)
T 2aq5_A 156 ILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR----PHEGTRPVHAVF 228 (402)
T ss_dssp EEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC----SSCSSSCCEEEE
T ss_pred EEEEECCCC---CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc----CCCCCcceEEEE
Confidence 999999886 677777 78999999999999999999999999999999999998887732 3333 4899999
Q ss_pred ccCCcEEEEE---eCCCcEEEEECCCCce-eeEec-CCCCCeEEEEECCCCCEEEEE-eCCc-EEEEEcCCCcc-ceEEe
Q 009763 366 HPDGLILGTG---TSEALVKIWDVKSQAN-VAKFD-GHVGAVTAISFSENGYYLATA-AHDG-VKLWDLRKLKN-FRSFE 437 (526)
Q Consensus 366 ~~~~~~l~~g---~~dg~i~iwd~~~~~~-~~~~~-~~~~~i~~l~~s~~~~~l~~~-~~d~-i~iwd~~~~~~-~~~~~ 437 (526)
+|++.+|++| +.|+.|++||+++++. +.... .+...+.+++|+|++.+|+++ +.|+ |++||+.+++. +..+.
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9999999999 7899999999998754 33332 466789999999999998754 4577 99999998875 55555
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEec
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASADIRVYQVAS 471 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~ 471 (526)
.+.+...+.+++|+|++.++++++..+++|++..
T Consensus 309 ~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 309 MFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp EECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 5545688999999999999887555599999854
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.6e-32 Score=262.65 Aligned_cols=253 Identities=12% Similarity=0.085 Sum_probs=209.6
Q ss_pred EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC-EEEEEECCCeEEEE
Q 009763 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFY 337 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iw 337 (526)
....+|.+.|++++|+|++++|++++.||.|++|++...........+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 33458999999999999999999999999999999987643234455568999999999999999 99999999999999
Q ss_pred eC-CCCeEEEEeecCCCCC--CCCCeeEEEEccCCcEEEEEeCCCcEEEEECCC---------CceeeEecCCCCCeEEE
Q 009763 338 DL-SSGICLTQVSDAGTDG--RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS---------QANVAKFDGHVGAVTAI 405 (526)
Q Consensus 338 d~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l 405 (526)
|+ .++.. ..+. . |...|.+++|+| +.+|++++.||.|++||+++ ++.+..+. |...|.++
T Consensus 85 d~~~~~~~-~~~~-----~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 85 DLIGSPSF-QALT-----NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp CSSSSSSE-EECB-----SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred EeccCCce-Eecc-----ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 99 87765 3332 4 778999999999 99999999999999999988 77777776 88899999
Q ss_pred EECCCCCEEEEEeCCc-EEEEEcCC-CccceEEecCCCCCCeeEEEEcC-CCCEEEEEeCC--eEEEEEecc--cCccee
Q 009763 406 SFSENGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASV--KADWNC 478 (526)
Q Consensus 406 ~~s~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d--i~v~~~~~~--~~~~~~ 478 (526)
+|+|++ +++++.++ |++||+++ +..........+...+.+++|+| ++.++++++.+ +++|+++.. ......
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 999887 88888887 99999998 65433333334467899999999 99999999998 999998654 111234
Q ss_pred eeeecCCC-------CCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 479 IKTFPDLS-------GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 479 ~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
...+..|. +...|.+++|+|++++|++++.||.|++||+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 44555542 24489999999999999999999999999998654
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.9e-31 Score=262.42 Aligned_cols=281 Identities=11% Similarity=0.190 Sum_probs=215.2
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCC
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~ 298 (526)
..|.+.|++++|+|+|++|++|+.+| +++|+..+++....... ..+..+++.++++.+ ++++.|++|++||..++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~- 91 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK- 91 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-
Confidence 66889999999999999999998775 78999988766655432 358889999888876 56778899999999886
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCeeEEEEccCCcEEEE--E
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT--G 375 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--g 375 (526)
+++..+. |...|.++.|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |
T Consensus 92 --~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--------~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 92 --QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--------FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp --EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--------EEEEEEEET--TEEEEEES
T ss_pred --cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--------CCceEEEEc--cEEEEeCC
Confidence 5666665 66799999998653 4443 4789999999987 55444431 344556666 45555 6
Q ss_pred eCCCcEEEEECCCCc----------------eeeEecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCccceEEe
Q 009763 376 TSEALVKIWDVKSQA----------------NVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~ 437 (526)
+.||.|++||++++. .+..+.+|.+.|++++|+|+|.+|++++.|+ |++||+++++.+..+.
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 899999999999865 2678899999999999999999999999996 9999999999998887
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcc-eee-----------------eeecCCCCCcceEEEEEc
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW-NCI-----------------KTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~-~~~-----------------~~~~~~~~~~~v~~~~~s 497 (526)
...+...|.+++|+|+|++|++++.| ++||++....... ..+ ..+.. ........++|+
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~ 314 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV-DKHVRGCKIAWI 314 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC-CTTCCCCEEEES
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc-CCCCCceEEEEe
Confidence 42236899999999999999999998 9999985432111 000 00111 012234679999
Q ss_pred CCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 498 PDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 498 ~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+++++|++++.||.+++|++..+.
T Consensus 315 ~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 315 SESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEEEEcCC
Confidence 999999999999999999986543
No 99
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-30 Score=253.34 Aligned_cols=246 Identities=22% Similarity=0.372 Sum_probs=215.0
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|...|.+++|+|++++|++|+.||.|++|+............+...+..+.+++++.+|++|+.|+.+++||.....
T Consensus 82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence 46788999999999999999999999999999999998888888899999999999999999999999999999987642
Q ss_pred ceeeeEecccCccceEEEEEecCC--CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
.....+.+|...+.+++|++++ .++++++.|+.|++||+.+++.+..+. +|...|.+++|+|++.+|++|+
T Consensus 162 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 162 --KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-----GHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp --EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred --eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-----CCCCcEEEEEECCCCCEEEEEe
Confidence 4445567899999999998764 578999999999999999999888775 6678999999999999999999
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEec-------CCCCCCeeEEE
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-------SDSETPTNSVD 449 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~-------~~~~~~i~~i~ 449 (526)
.||.|++||+++.+.+..+..+ ..|.++.|+|++.+++++.++.|++||++....+..+.. ..+...|++++
T Consensus 235 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 235 KDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred CCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence 9999999999999998888754 689999999998877766644599999998776655542 23467899999
Q ss_pred EcCCCCEEEEEeCC--eEEEEEecc
Q 009763 450 FDHSGSYLAVASAD--IRVYQVASV 472 (526)
Q Consensus 450 ~s~~~~~l~~~~~d--i~v~~~~~~ 472 (526)
|+|+|++|++|+.| |+||++..+
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999999999998 999998543
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=274.29 Aligned_cols=265 Identities=9% Similarity=0.081 Sum_probs=208.7
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
-..+|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---- 77 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN---- 77 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS----
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc----
Confidence 346899999999999999999999999 755444 447999999999999999 5666666664432
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
....+ .|...|.+++|+|+|..|++++.||.|++||... .+..+. +...-....+.+++|+|||++|++|+.||.|
T Consensus 78 ~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 78 GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 22222 4688999999999999999999999999999644 444432 1111112369999999999999999999999
Q ss_pred EEEECCCCce-------eeEe----cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccc---eEEecCCCCCCee
Q 009763 382 KIWDVKSQAN-------VAKF----DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF---RSFESSDSETPTN 446 (526)
Q Consensus 382 ~iwd~~~~~~-------~~~~----~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~---~~~~~~~~~~~i~ 446 (526)
++||+.++.. +.++ .+|...|.+++|+|+| +++++.|+ |++||+...... ..+.. .+...|.
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~ 230 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKIT 230 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEE
Confidence 9999998753 5666 5677899999999999 66777776 999999887742 34432 2357899
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEE--cCCCCEEEEEeCCCcEEEeeCC
Q 009763 447 SVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF--GPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
+++|+ |++|++++.. +++|++ ..........+ |.+.|.++.| +||+..|++++.||. ++|.++
T Consensus 231 svaFs--g~~LASa~~~tIkLWd~----~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV--DYKVVLTCPGYVHKIDL----KNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE--TTEEEEECSSEEEEEET----TTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE--CCEEEEEeCCeEEEEEC----CCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999 6899988866 999997 33333222224 4889999999 999999999999999 999975
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.9e-32 Score=273.28 Aligned_cols=254 Identities=20% Similarity=0.276 Sum_probs=198.2
Q ss_pred EEecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEE
Q 009763 259 TTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCF 336 (526)
Q Consensus 259 ~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~i 336 (526)
....+|...|++|+|+| ++++|++|+.||+|+|||+.++.. .....+.+|.+.|++|+|+| ++++|++|+.||+|++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34556888999999999 567899999999999999987532 44556678999999999998 6889999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCC-EEE
Q 009763 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY-YLA 415 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~ 415 (526)
||++++....... ...+...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. +|+
T Consensus 192 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 192 QDFKGNILRVFAS---SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EETTSCEEEEEEC---CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred eeccCCceeEEec---cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 9998765543332 22344568899999999999999999999999986 456778889999999999999875 788
Q ss_pred EEeCCc-EEEEEcCCCccceEEec-CCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCC----
Q 009763 416 TAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG---- 487 (526)
Q Consensus 416 ~~~~d~-i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~---- 487 (526)
+++.|+ |++||+++.+....+.. ..|...|++++|+|+|.+|++++.| ++||++. .+.....+..|.+
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~----~~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS----QWDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS----SSSSEEEECCCCCCCCS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC----CCccceEEecccccccc
Confidence 899998 99999998776544432 2347789999999999999999998 9999984 3333333333211
Q ss_pred CcceEEEEEcCCCCEEEEEe------------CCCcEEEeeCCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGS------------MDRNLRVFGLPGND 521 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~------------~dg~v~iw~l~~~~ 521 (526)
...+....|++++.++++++ .++.|++||...+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 11233456667666666554 34579999987654
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=272.60 Aligned_cols=254 Identities=16% Similarity=0.277 Sum_probs=203.0
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC--------ceeeeEecccCc------------cceEEEEEecCC-
Q 009763 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--------NYDCKHTLKDHT------------AEVQAVTVHATN- 322 (526)
Q Consensus 264 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~h~------------~~v~~l~~~p~~- 322 (526)
|.+.|++++|+|+|++|++|+.||.|+|||+.+.. .+.....+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999988653 233577888998 889999999998
Q ss_pred -CEEEEEECCCeEEEEeCCCCeEEEEee-----------------------------------cCCCCCCCCCeeEEEEc
Q 009763 323 -KYFVTASLDNTWCFYDLSSGICLTQVS-----------------------------------DAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 323 -~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~~~~~~v~~~~~~ 366 (526)
.+|++++.||.|++||+.++....... .....+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 799999999999999998754421100 00023678899999999
Q ss_pred cCCcEEEEEeCCCcEEEEECCCC-ceee-------EecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCcc----
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQ-ANVA-------KFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN---- 432 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~-~~~~-------~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~---- 432 (526)
|++.+|++| .||.|++||+++. .... .+.+|...|++++|+|++ .+|++++.|+ |++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999999 7999999999843 3443 256788999999999998 9999999998 99999999886
Q ss_pred ceEEecCCC----------CCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCc------------
Q 009763 433 FRSFESSDS----------ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTG------------ 489 (526)
Q Consensus 433 ~~~~~~~~~----------~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~------------ 489 (526)
...+..+.. ...|.+++|+|+|++|++++.. +++|++.. ....+..+..|....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNM---ENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTC---CSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCC---Cccccceeecccccccccccccccccc
Confidence 566665421 0289999999999999998887 99999843 134455555542111
Q ss_pred -ceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 490 -KATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 490 -~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.+..++|+|++++|++|+.||.|++||+..++
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 13459999999999999999999999998754
No 103
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.3e-32 Score=264.89 Aligned_cols=240 Identities=19% Similarity=0.249 Sum_probs=204.3
Q ss_pred CCCCCeEEEEecCC---CCEEEEEeCCCcEEEEeCCCCc-EEEEecccccceeEEEE------ecCCCEEEEEeCCCcEE
Q 009763 221 TSKPGIVSLDIHYS---KDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKF------VTEGDLFLTGSADKTVR 290 (526)
Q Consensus 221 ~~~~~I~~~~~s~~---~~~l~t~~~dg~v~vwd~~~~~-~~~~~~~h~~~V~~l~~------~~~~~~l~s~s~dg~i~ 290 (526)
.|...|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 57889999999998 6999999999999999999887 88899999999999965 67899999999999999
Q ss_pred EEeCCCCCceeeeEecccCcc----ceEEEE----EecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 291 VWQGSEDGNYDCKHTLKDHTA----EVQAVT----VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~----~v~~l~----~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
+||+.... .....+..|.+ .|.++. |+|+++++++++.||.|++||+++++..... .+...+.+
T Consensus 143 vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~v~~ 214 (357)
T 3i2n_A 143 VWDPRQKD--DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET------NIKNGVCS 214 (357)
T ss_dssp EECTTSCS--SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE------ECSSCEEE
T ss_pred EEeCCCCC--CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec------CCCCceEE
Confidence 99998763 24444544443 899998 6789999999999999999999999875554 34568999
Q ss_pred EEEcc---CCcEEEEEeCCCcEEEEECCCCceeeEec-----CCCCCeEEEEECCCCC-EEEEEeCCc-EEEEEcCCCc-
Q 009763 363 AAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFD-----GHVGAVTAISFSENGY-YLATAAHDG-VKLWDLRKLK- 431 (526)
Q Consensus 363 ~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~s~~~~-~l~~~~~d~-i~iwd~~~~~- 431 (526)
++|+| ++.+|++|+.||.|++||+++++....+. +|...|++++|+|++. +|++++.|+ |++||++...
T Consensus 215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 99999 99999999999999999998876655554 8999999999999998 899999998 9999998653
Q ss_pred ------------------cceEEecCCCCCCeeEEEEcCCCCEEE-EEeCC--eEEEEEe
Q 009763 432 ------------------NFRSFESSDSETPTNSVDFDHSGSYLA-VASAD--IRVYQVA 470 (526)
Q Consensus 432 ------------------~~~~~~~~~~~~~i~~i~~s~~~~~l~-~~~~d--i~v~~~~ 470 (526)
.+..+..+ ...|.+++|+|++++|+ +++.| ++||++.
T Consensus 295 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 295 RSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp C--CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 23344443 67899999999999998 68877 9999983
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.4e-31 Score=265.43 Aligned_cols=243 Identities=19% Similarity=0.264 Sum_probs=209.7
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
..|...|++|+|+|+|++|++|+.||.|++||+.+++.+..+.+|...+.++.| ++.+|++|+.|+.+++||.....
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~- 220 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE- 220 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccc-
Confidence 357788999999999999999999999999999999999999999999999887 56899999999999999987653
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC-CcEEEE--Ee
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGT--GT 376 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~--g~ 376 (526)
..+..+.+|...+..+.|+|++.++++++.|+.+++||..+++....... ....|...|.+++|+|+ +.++++ |+
T Consensus 221 -~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 221 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE-EECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred -eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee-eecccCCceeeeeeCCCcccEEEEEeec
Confidence 56677889999999999999999999999999999999987653211100 01256678999999995 456665 45
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe--CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
.|+.|++||+++++....+..+ ..+.++.|++++..+++++ .|+ |+|||+++++.+..+..| ...|++++|+|+
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spd 375 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPD 375 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTT
T ss_pred CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCC
Confidence 7999999999999998888754 5789999999999988876 456 999999999999988776 679999999999
Q ss_pred CCEEEEEeCC--eEEEEEe
Q 009763 454 GSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~ 470 (526)
|.+|++|+.| ++||++.
T Consensus 376 g~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 376 GATVASAAADETLRLWRCF 394 (420)
T ss_dssp SSCEEEEETTTEEEEECCS
T ss_pred CCEEEEEecCCeEEEEECC
Confidence 9999999999 9999984
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=294.11 Aligned_cols=249 Identities=20% Similarity=0.336 Sum_probs=212.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecccccceeEEEEecC--CCEEEEEeCCCcEEEEe
Q 009763 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd 293 (526)
+..+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|.+.|++++|+++ +++|++|+.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 457899999999999999999999999999999987 55778889999999999999987 99999999999999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc----
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---- 367 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 367 (526)
+.++ .......+.+|...|++++|+|+ ++++++|+.||.|++||+.++....... ..+|...|.+++|+|
T Consensus 84 ~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 84 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCCC--
T ss_pred CCCC-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCcccc
Confidence 9874 23467778889999999999999 9999999999999999998874332222 125678999999999
Q ss_pred ---------CCcEEEEEeCCCcEEEEECCCC----ceeeEecCCCCCeEEEEECCC---CCEEEEEeCCc-EEEEEcCCC
Q 009763 368 ---------DGLILGTGTSEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN---GYYLATAAHDG-VKLWDLRKL 430 (526)
Q Consensus 368 ---------~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~d~-i~iwd~~~~ 430 (526)
++.++++|+.||.|++||++++ .....+.+|.+.|++++|+|+ +.+|++++.|+ |++||++++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5899999999999999999887 456677889999999999999 89999999998 999999986
Q ss_pred ccc---eEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 431 KNF---RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 431 ~~~---~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
... .......+...+.+++|+|+|.+|++|+.| +++|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 421 112222346789999999999999999988 9999986
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.1e-31 Score=269.29 Aligned_cols=247 Identities=21% Similarity=0.356 Sum_probs=208.8
Q ss_pred cCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCC----------CcEEEEecccccceeEEEEecCCC-EEEEEeCCC
Q 009763 220 KTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPS----------GQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADK 287 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~----------~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg 287 (526)
..|.+.|++++|+|+ +.+|++++.||.|++|++.. ...+..+.+|...|.+++|+|++. +|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 457889999999997 67999999999999999876 567788899999999999999988 999999999
Q ss_pred cEEEEeCCCCCc----eeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCC---eEEEEeecCCCCCCCCC
Q 009763 288 TVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSG---ICLTQVSDAGTDGRPEG 359 (526)
Q Consensus 288 ~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 359 (526)
.|++|++..... ......+.+|...|.+++|+| ++.+|++++.||.|++||++++ ..+..+. .|...
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~ 279 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----AHTAE 279 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-----CCSSC
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-----cCCCC
Confidence 999999987422 222456678999999999999 6789999999999999999987 3445553 56678
Q ss_pred eeEEEEccCCc-EEEEEeCCCcEEEEECCC-CceeeEecCCCCCeEEEEECCCC-CEEEEEeCCc-EEEEEcCCCcc---
Q 009763 360 YTSAAFHPDGL-ILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN--- 432 (526)
Q Consensus 360 v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~--- 432 (526)
|++++|+|++. +|++|+.||.|++||+++ ...+..+..|...|.+++|+|++ .+|++++.++ |++||++....
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 99999999886 799999999999999998 56788888999999999999998 5788998888 99999987321
Q ss_pred ---------ceEEecCCCCCCeeEEEEcCCCC-EEEEEeCC--eEEEEEec
Q 009763 433 ---------FRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVAS 471 (526)
Q Consensus 433 ---------~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~ 471 (526)
...+....+...|.+++|+|++. +|++++.+ ++||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 22223333467899999999999 88888887 99999843
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.1e-30 Score=264.00 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=230.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-----EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.|++||+.++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~- 201 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL- 201 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-
Confidence 356699999977788888889999999999998887 44578899999999999999999999999999999876
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT- 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~- 376 (526)
+.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+.. ...+.+++|+|++..+++++
T Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 202 --AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK------IGLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp --CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC------CSEEEEEEECTTSSEEEEEEE
T ss_pred --eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC------CCCceEEEEcCCCCEEEEEEC
Confidence 56667778899999999999999886555 799999999999988776642 24589999999999998887
Q ss_pred -------CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEE-EEEeCCc-EEEEEcCCCccceEEecCCCCCCeeE
Q 009763 377 -------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL-ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 377 -------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l-~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
.||.|++||+++++.+..+. +...+.+++|+|++..+ ++++.++ |++||+.+++....+.. ...+.+
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~ 349 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPNT 349 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCCe
Confidence 58899999999988776663 55688999999999755 5556677 99999999888777763 567899
Q ss_pred EEEcCCCCEEEEEeC-----------------CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC-C
Q 009763 448 VDFDHSGSYLAVASA-----------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-D 509 (526)
Q Consensus 448 i~~s~~~~~l~~~~~-----------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d 509 (526)
++|+|+|+++++++. .+.+|+. .....+..+.. ...+.+++|+|+|++|++++. |
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT----TTDTVKEFWEA---GNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET----TTTEEEEEEEC---SSSEEEEEECTTSCEEEEEETTT
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC----CCCcEEEEecC---CCCCceEEEcCCCCEEEEEECCC
Confidence 999999999998876 2777775 34555555554 457899999999999998875 9
Q ss_pred CcEEEeeCCC
Q 009763 510 RNLRVFGLPG 519 (526)
Q Consensus 510 g~v~iw~l~~ 519 (526)
|.|++|++++
T Consensus 423 ~~i~v~~~~~ 432 (433)
T 3bws_A 423 HQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEETT
T ss_pred CeEEEEEecC
Confidence 9999999864
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=287.44 Aligned_cols=256 Identities=17% Similarity=0.226 Sum_probs=208.8
Q ss_pred EEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecC--CCEEEEEECCCeEE
Q 009763 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWC 335 (526)
Q Consensus 258 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~ 335 (526)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+ .......+.+|.+.|++++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3467899999999999999999999999999999998742 33677788899999999999987 99999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC--CcEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECC--
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSE-- 409 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~-- 409 (526)
+||+.++....... ...|...|.+++|+|+ +.++++|+.||.|++||++++. ....+.+|...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 81 IWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EEECCCCccccccc---ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 99999987332222 1267789999999998 9999999999999999998873 4456678999999999999
Q ss_pred -----------CCCEEEEEeCCc-EEEEEcCCCcc----ceEEecCCCCCCeeEEEEcCC---CCEEEEEeCC--eEEEE
Q 009763 410 -----------NGYYLATAAHDG-VKLWDLRKLKN----FRSFESSDSETPTNSVDFDHS---GSYLAVASAD--IRVYQ 468 (526)
Q Consensus 410 -----------~~~~l~~~~~d~-i~iwd~~~~~~----~~~~~~~~~~~~i~~i~~s~~---~~~l~~~~~d--i~v~~ 468 (526)
++.+|++|+.|+ |++||++++.. ...+.. |...|.+++|+|+ +.+|++++.| +++|+
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 589999999998 99999988743 333333 4789999999999 9999999988 99999
Q ss_pred EecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 469 VASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+......... .......+...|++++|+|+|++|++|+.||.|++|++..+
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBC-CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCccee-EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 8653222111 11222234778999999999999999999999999999853
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-30 Score=247.18 Aligned_cols=243 Identities=19% Similarity=0.271 Sum_probs=207.6
Q ss_pred CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeE
Q 009763 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 334 (526)
Q Consensus 255 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i 334 (526)
.+....+.+|.+.|++++| +++++|++|+.||.|++||+.+. .....+..|...|.+++|+|+++++++++.||.+
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 3678889999999999999 99999999999999999999775 6677778899999999999999999999999999
Q ss_pred EEEeCCCC---eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECC-C
Q 009763 335 CFYDLSSG---ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-N 410 (526)
Q Consensus 335 ~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~ 410 (526)
++|++... +....+. .|...+.++.| ++.++++++.||.|++|| .++....+..|...+.++.|+| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLI-----GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp EEEETTCCTTSCC-CEEC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT
T ss_pred EEEEeeecCCCCcccchh-----hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC
Confidence 99998765 3333332 66788999999 577999999999999999 6778888888999999999988 8
Q ss_pred CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCC
Q 009763 411 GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG 487 (526)
Q Consensus 411 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~ 487 (526)
+.++++++.++ |++||. .+....+.. .+...+.+++|+|++. +++++.+ +++|++ .....+..+..|
T Consensus 155 ~~~l~~~~~d~~i~i~d~--~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~----~~~~~~~~~~~~-- 224 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQN--DKVIKTFSG-IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM----HTGDVLRTYEGH-- 224 (313)
T ss_dssp TTEEEEEETTSCEEEEET--TEEEEEECS-SCSSCEEEEEEEETTE-EEEEETTSEEEEEET----TTCCEEEEEECC--
T ss_pred CCEEEEEECCCCEEEEec--CceEEEEec-cCcccEEEEEEcCCCe-EEEccCCCeEEEEEC----CchhhhhhhhcC--
Confidence 99999999998 999993 344444544 1367899999999999 7778777 999997 445666777665
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
...|++++|+|++ .|++++.||.|++||+..+.
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred CceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 7899999999999 58899999999999998764
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=2.7e-29 Score=250.22 Aligned_cols=264 Identities=14% Similarity=0.159 Sum_probs=217.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCCceeeeEecccCccceE
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (526)
.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|+++++ ++++.|+.|++||+.++ +.+..+..+. .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-Ccc
Confidence 4678889999999999999999998887754 8999999999976 67778999999999876 5666665444 899
Q ss_pred EEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE-EEEeCCCcEEEEECCCCcee
Q 009763 315 AVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSEALVKIWDVKSQANV 392 (526)
Q Consensus 315 ~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~ 392 (526)
+++|+|+++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+.+++.+
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 999999999886555 579999999999998877752 2468999999999877 67888999999999999988
Q ss_pred eEecCCCCCeEEEEECCCCCEEE-EEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEe---CC--eE
Q 009763 393 AKFDGHVGAVTAISFSENGYYLA-TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS---AD--IR 465 (526)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~l~-~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~---~d--i~ 465 (526)
..+..+ ..+.+++|+|++.+|+ +++.++ |++||+++++....+.. ...+.+++|+|+|++|++++ .+ ++
T Consensus 152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 888755 4679999999998884 556666 99999999888777664 45789999999999999887 34 88
Q ss_pred EEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEE-EEEeCCCcEEEeeCCCCC
Q 009763 466 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYI-AVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 466 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~l~~~~ 521 (526)
+|++ .....+..+..+ ..+.+++|+|++++| ++++.|+.|++||+..++
T Consensus 228 ~~d~----~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 228 MIDT----GTNKITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEET----TTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEC----CCCeEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 8887 344555666553 357899999999987 566889999999997643
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.7e-30 Score=256.47 Aligned_cols=242 Identities=15% Similarity=0.208 Sum_probs=192.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEe-----------CCCcEEEEeCCCCcE-E---EEe-----cccccceeEEEEecCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGG-----------VDTNAVLFDRPSGQI-V---TTL-----SGHSKKVTSVKFVTEGD 278 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~-----------~dg~v~vwd~~~~~~-~---~~~-----~~h~~~V~~l~~~~~~~ 278 (526)
...|...|.+++++ ++.+++|. .|+.+++|++..... + ... ..+...+.+++|+|||+
T Consensus 69 l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 69 LEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT 146 (365)
T ss_dssp CCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred ccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence 34567788888765 56676653 577899998765432 1 111 13445689999999999
Q ss_pred EEEEEe--CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC
Q 009763 279 LFLTGS--ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 356 (526)
Q Consensus 279 ~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 356 (526)
++++++ .|++|+|||+.+. .++..+. |...|.+++|+|+|+++++++.+ .+.+|+..++..+.... ...|
T Consensus 147 ~la~as~~~d~~i~iwd~~~~---~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~---~~~~ 218 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDL---TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT---DFDK 218 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC---CCCT
T ss_pred EEEEEECCCCCEEEEeECCCC---cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee---cCCC
Confidence 877554 7899999999886 5666664 77889999999999999998854 56677777776655443 2356
Q ss_pred CCCeeEEEEccCCcEEEEEeCCC----cEEEEECCCCce----eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEc
Q 009763 357 PEGYTSAAFHPDGLILGTGTSEA----LVKIWDVKSQAN----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 427 (526)
Q Consensus 357 ~~~v~~~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~ 427 (526)
...+.+++|+|++.++++++.|+ .+++||+..... ...+.+|...|++++|+|+|++|++|+.|+ |+|||+
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 77899999999999999998887 688899876643 345678889999999999999999999998 999999
Q ss_pred CCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEec
Q 009763 428 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 471 (526)
Q Consensus 428 ~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~ 471 (526)
++++.+..+.. .|...|++++|+|+|++|++|+.| ++||++..
T Consensus 299 ~~~~~~~~~~~-gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSMSKIFKQ-AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTTEEEEEETT-SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCcEEEEecC-cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99998877632 237899999999999999999999 99999854
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.3e-29 Score=256.63 Aligned_cols=234 Identities=24% Similarity=0.442 Sum_probs=206.2
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..+|.+.|++++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||+.+..
T Consensus 169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS
T ss_pred EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC
Confidence 4578899999999 68999999999999999999999999999999999999996 5699999999999999998865
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.......+.+|...|.++.| +++++++|+.||.|++||+++++.+..+. +|...+.++.+ ++.++++|+.|
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~g~~d 315 (435)
T 1p22_A 245 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQY--RDRLVVSGSSD 315 (435)
T ss_dssp CCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEE--ETTEEEEEETT
T ss_pred CceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-----CCCCcEEEEEe--CCCEEEEEeCC
Confidence 44445677899999999999 68999999999999999999999988886 56678999988 46799999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCc---------cceEEecCCCCCCeeEE
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK---------NFRSFESSDSETPTNSV 448 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~---------~~~~~~~~~~~~~i~~i 448 (526)
|.|++||+++++.+..+.+|...|.+++| ++.+|++|+.|+ |++||++++. .+..+..+ ...|.++
T Consensus 316 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l 391 (435)
T 1p22_A 316 NTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRL 391 (435)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCE
T ss_pred CeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEE
Confidence 99999999999999999999999999999 788999999998 9999997665 45555544 6789999
Q ss_pred EEcCCCCEEEEEeCC--eEEEEEec
Q 009763 449 DFDHSGSYLAVASAD--IRVYQVAS 471 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d--i~v~~~~~ 471 (526)
+| ++.+|++++.| +++|++..
T Consensus 392 ~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 392 QF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EE--CSSCEEECCSSSEEEEEC---
T ss_pred Ee--CCCEEEEEeCCCEEEEEECCC
Confidence 99 68889999988 99999844
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=250.83 Aligned_cols=285 Identities=14% Similarity=0.188 Sum_probs=199.7
Q ss_pred cCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecC---CCEEEEEeCCCcEEEEeCC
Q 009763 220 KTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE---GDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 220 ~~~~~~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~dg~i~iwd~~ 295 (526)
..|...|++++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++. +.++++++.||.|++||+.
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 35889999999999 77899999999999999999998888776 7788999999984 4499999999999999998
Q ss_pred CCCceeeeEecccCccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCe-EEEEeec----------CCCCCCCCCeeEE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI-CLTQVSD----------AGTDGRPEGYTSA 363 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~v~~~ 363 (526)
++ .....+.+|...|.+++|+|++. ++++++.||.|++||++++. .+..+.. .....|...|.++
T Consensus 175 ~~---~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 175 SG---SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SS---CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred Cc---ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 76 56777888999999999999998 58999999999999998765 3333311 0113677889999
Q ss_pred EEccCCcEEEEEeCCCcEEEEECCCCceeeEecCC-----CCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEe
Q 009763 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 364 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 437 (526)
+|+|++.+|++++.||.|++||+++++....+..+ ...+........+..+++++.++ |++||+.+++.+..+.
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 99999999999999999999999988765544322 11222222222334444555555 9999999999988887
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-CCCEEEEEeCCCcEEE
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRV 514 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~i 514 (526)
.+ ...|.+++|+|++.+|++++.| +++|++.. ...+...... .....+.+ +...+.+++.|+.+++
T Consensus 332 ~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
T 4a11_B 332 GH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSL----YEPVPDDDET-----TTKSQLNPAFEDAWSSSDEEGGTSA 400 (408)
T ss_dssp CC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred cC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC----CCccCCCCce-----EeccccccccceeecccCccCceee
Confidence 65 6789999999999999999988 99999843 3333322211 11123333 3344566778999999
Q ss_pred eeCCC
Q 009763 515 FGLPG 519 (526)
Q Consensus 515 w~l~~ 519 (526)
|+.+.
T Consensus 401 W~~~~ 405 (408)
T 4a11_B 401 WSHPQ 405 (408)
T ss_dssp -----
T ss_pred cCCcc
Confidence 98764
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.3e-30 Score=258.34 Aligned_cols=243 Identities=12% Similarity=0.136 Sum_probs=176.4
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-----EecccccceeEEEEec--------CCCEEEEEeCCCc
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-----TLSGHSKKVTSVKFVT--------EGDLFLTGSADKT 288 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~-----~~~~h~~~V~~l~~~~--------~~~~l~s~s~dg~ 288 (526)
|.+.+....+++++.+|++|+.|++|+|||..++.... .+.+|.+.|++++|+| ++++|++|+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 44445555666778899999999999999998876533 4679999999999998 7889999999999
Q ss_pred EEEEeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecC----------------
Q 009763 289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDA---------------- 351 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------------- 351 (526)
|+|||+.++ .+...+..|...|.+++|+|++ .+|++++.||+|++||+.+++........
T Consensus 168 v~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 168 LIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp EEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred EEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 999999775 5666667899999999999987 48999999999999999987654433211
Q ss_pred ----CCCCCCCCeeEEEEc-cCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEE------------------EC
Q 009763 352 ----GTDGRPEGYTSAAFH-PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS------------------FS 408 (526)
Q Consensus 352 ----~~~~~~~~v~~~~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~------------------~s 408 (526)
...+|...+.++.|+ +++..|++++.|+.+++||+..+.....+..|...+..+. |+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 123566788899987 6999999999999999999988776655554444333333 33
Q ss_pred C--CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 409 E--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 409 ~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
| ++.++++|+.|+ |++||+.+++.......+ ..+|.+++|+|+|++|++++.+ +.+|.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 3 344677788888 999999999888777665 5789999999999999999998 778876
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.3e-29 Score=246.69 Aligned_cols=262 Identities=16% Similarity=0.164 Sum_probs=209.2
Q ss_pred EEeCCCCcEEEEecccccceeEEEEecC---CCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEE
Q 009763 249 LFDRPSGQIVTTLSGHSKKVTSVKFVTE---GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYF 325 (526)
Q Consensus 249 vwd~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 325 (526)
.++....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+.+. .....+.+|...|++++|+|++++|
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEE
Confidence 3455667778889999999999999998 69999999999999999987321 3336778899999999999999999
Q ss_pred EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEE--ccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeE
Q 009763 326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF--HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT 403 (526)
Q Consensus 326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 403 (526)
++++.||.|++||+++++.+... .|...|.+++| ++++.+|++++.||.|++||+++++.+..+..+. .+.
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~ 174 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQIA------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCY 174 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEE
T ss_pred EEEcCCCcEEEEEcCCCCceeec------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cce
Confidence 99999999999999999877644 45678999999 8899999999999999999999999988888654 677
Q ss_pred EEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE----EEEEeCC--eEEEEEecccCcc
Q 009763 404 AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY----LAVASAD--IRVYQVASVKADW 476 (526)
Q Consensus 404 ~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~----l~~~~~d--i~v~~~~~~~~~~ 476 (526)
++.+.+ ..+++++.++ +.+||++...................+.+.++... +++++.+ +++|+++.... .
T Consensus 175 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~ 251 (368)
T 3mmy_A 175 CADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-A 251 (368)
T ss_dssp EEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-H
T ss_pred EEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-c
Confidence 777764 4677777776 99999988665444443333556677777665554 8888888 89999854321 1
Q ss_pred eeeeeecCCCC----------CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 477 NCIKTFPDLSG----------TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 477 ~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.....+..|.. ...|++++|+|++++|++|+.||.|++||+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 33344444311 1269999999999999999999999999998653
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-29 Score=255.30 Aligned_cols=249 Identities=12% Similarity=0.114 Sum_probs=206.8
Q ss_pred cCCCCCeEEEEecCCCCEE-EEEeCCCcEEEEeCC--CCcEEEEec--ccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 009763 220 KTSKPGIVSLDIHYSKDVI-ATGGVDTNAVLFDRP--SGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l-~t~~~dg~v~vwd~~--~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 294 (526)
..|.+.|++++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++++|++|+.||.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 3567789999999999986 899999999999998 888888776 56789999999999999999999999999999
Q ss_pred CCCCcee-eeEecccCccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc
Q 009763 295 SEDGNYD-CKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (526)
Q Consensus 295 ~~~~~~~-~~~~~~~h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 370 (526)
.+..... ....+.+|...|++++|+|+ +++|++++.|+.|++||+.++..+..+. .+|...|.+++|+ ++.
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL----FGHKHFVSSICCG-KDY 253 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC----CCCSSCEEEEEEC-STT
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee----cCCCCceEEEEEC-CCC
Confidence 8764322 44467789999999999999 9999999999999999999988777652 2677899999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEecC-------------------------CCCCeEEEEECCCCCEEEEEe-CCc-EE
Q 009763 371 ILGTGTSEALVKIWDVKSQANVAKFDG-------------------------HVGAVTAISFSENGYYLATAA-HDG-VK 423 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~~~~~~~~~-------------------------~~~~i~~l~~s~~~~~l~~~~-~d~-i~ 423 (526)
+|++|+.|+.|++||+++++.+..+.. ....|.+++|+|++.+|++++ .++ |+
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 999999999999999999988877752 235789999999999999998 666 99
Q ss_pred EEEc--CCC---ccceEEecCCCCCCeeEEEEcCCCCEEEEEeC-------C-eEEEEEecccCcc
Q 009763 424 LWDL--RKL---KNFRSFESSDSETPTNSVDFDHSGSYLAVASA-------D-IRVYQVASVKADW 476 (526)
Q Consensus 424 iwd~--~~~---~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~-------d-i~v~~~~~~~~~~ 476 (526)
+||+ ... ..+..+..+ ..+.+++|+|++.++++++. + +.+|.++.....+
T Consensus 334 iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 334 ILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp EEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred EEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 9999 554 445555543 67999999996544444442 2 7999986544333
No 117
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.5e-29 Score=240.31 Aligned_cols=242 Identities=18% Similarity=0.254 Sum_probs=205.7
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (526)
..|...|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...+.++.+ ++..+++|+.++.+++|+.....
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~- 140 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE- 140 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-
Confidence 467788999999999999999999999999999999999999999998877655 67899999999999999987654
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc-E--EEEEe
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-I--LGTGT 376 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~--l~~g~ 376 (526)
..+..+.+|...+..+.++++++++++++.||.|++||+++++........ ...+...+.++.++|++. + +++++
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 141 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred -eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee-ecccCCceEEEEecCCCCcEEEEEecC
Confidence 566677899999999999999999999999999999999876532221111 124567899999999653 3 34667
Q ss_pred CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe--CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCC
Q 009763 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
.++.|++||.+......... +...+..+.|++++..+++++ .|+ |++||+++++.+..+..| ...|++++|+|+
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spd 295 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPD 295 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTT
T ss_pred CCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCC
Confidence 88999999999887766655 667899999999998888765 566 999999999999988776 689999999999
Q ss_pred CCEEEEEeCC--eEEEEE
Q 009763 454 GSYLAVASAD--IRVYQV 469 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~ 469 (526)
|++|++|+.| ++||++
T Consensus 296 g~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 296 GATVASAAADETLRLWRC 313 (318)
T ss_dssp SSCEEEEETTTEEEEECC
T ss_pred CCEEEEEecCCeEEEEEC
Confidence 9999999999 999987
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-30 Score=260.53 Aligned_cols=250 Identities=11% Similarity=0.094 Sum_probs=202.1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccc-----ceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-----KVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
.|.+.|.+++|+|+|.+||+++.||.|++||... .+..+. |.. .|.+++|+|+|++|++|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5678999999999999999999999999999654 666777 665 49999999999999999999999999998
Q ss_pred CCCc----eeeeEec----ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE---EEeecCCCCCCCCCeeEEE
Q 009763 296 EDGN----YDCKHTL----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL---TQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 296 ~~~~----~~~~~~~----~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~ 364 (526)
++.. +-.+.++ .+|...|.+++|+|+| +++++.|++|++||+.++... ..+. .+|...|.+++
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----~~h~~~V~sva 233 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----NASRRKITDLK 233 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----CCCSSCCCCEE
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----ccccCcEEEEE
Confidence 7531 0134555 6788899999999999 889999999999999887732 3342 14557899999
Q ss_pred EccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEE--CCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCC
Q 009763 365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF--SENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 365 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~--s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~ 442 (526)
|+ |..|++++ ++.|++||+.+++......+|...|..+.| +|++..|++++.+|.++|.+.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d-------------- 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED-------------- 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS--------------
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec--------------
Confidence 99 68888887 699999999988774444479999999999 999999999998877999876
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC
Q 009763 443 TPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 508 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 508 (526)
.++++|++..+++....+++|+.. +.....+. +...|.+++|+|||+.+|+++.
T Consensus 297 ----~~~~spd~~l~a~~d~~v~lW~~~-----g~~l~~~~---~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ----ELHVTADNIIAPYLEKKFKKWSTI-----WNEFNNYE---TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----SEEEECCCSSHHHHHHHHHHTTTT-----TTSSSSSC---CEEEEEEEEECTTSSEEEEEEE
T ss_pred ----cEEECCCceEEEEcCCEEEEEECC-----CCceeeec---cceEEEEEEECCCCCEEEEEEe
Confidence 155899998888763238888741 22222222 2556899999999999998863
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.3e-29 Score=252.80 Aligned_cols=232 Identities=12% Similarity=0.095 Sum_probs=165.5
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCc--eeeeEecccCccceEEEEEec--------CCCEEEEEECCCeEEEEeCCCCe
Q 009763 274 VTEGDLFLTGSADKTVRVWQGSEDGN--YDCKHTLKDHTAEVQAVTVHA--------TNKYFVTASLDNTWCFYDLSSGI 343 (526)
Q Consensus 274 ~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p--------~~~~l~s~s~dg~i~iwd~~~~~ 343 (526)
.+++.+|++|+.|++|+|||...+.. ...+..+.+|.+.|++++|+| ++++|++++.|++|++||+.++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 34566899999999999999887532 123445789999999999998 78899999999999999999888
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCC-cEEEEEeCCCcEEEEECCCCceeeEe-------------------------cC
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKF-------------------------DG 397 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------------~~ 397 (526)
.+..+. .|...+.+++|+|++ .+|++|+.||.|++||+++++..... .+
T Consensus 178 ~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 178 PILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred eeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 776665 455789999999977 58999999999999999887543221 35
Q ss_pred CCCCeEEEEEC-CCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC----------------CCCeeEEEEcC--CCCEE
Q 009763 398 HVGAVTAISFS-ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----------------ETPTNSVDFDH--SGSYL 457 (526)
Q Consensus 398 ~~~~i~~l~~s-~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----------------~~~i~~i~~s~--~~~~l 457 (526)
|...+.++.|+ ++|..|++++.|+ +++||+..++....+..+.. ........|+| ++.++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 66788899986 7999999999998 99999987665444432210 01112223333 33455
Q ss_pred EEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 458 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
++|+.| +++|++.. ......+..+ ...|.+++|+|||++||+++.|| +.+|.+
T Consensus 333 ~sgs~Dg~V~lwd~~~----~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYE----KDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEETTTTEEEEEETTC----TTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEECCCCEEEEEECCC----CcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 666666 99999743 3333333333 67899999999999999998766 555554
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.2e-26 Score=231.01 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=215.5
Q ss_pred CCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEE-EeCCCcEEEEeCCCCCcee
Q 009763 224 PGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l-~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~ 301 (526)
..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++ ++.|+.|++||+.++ +
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---~ 107 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---T 107 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---E
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC---e
Confidence 458999999999976 677789999999999999988888665 8999999999997754 556799999999886 5
Q ss_pred eeEecccCccceEEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE-EEEeCCC
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSEA 379 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg 379 (526)
.+..+.. ...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+... ..+.+++|+|++..+ ++++.++
T Consensus 108 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~dg~~l~~~~~~~~ 180 (391)
T 1l0q_A 108 VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG------RSPKGIAVTPDGTKVYVANFDSM 180 (391)
T ss_dssp EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC------SSEEEEEECTTSSEEEEEETTTT
T ss_pred EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC------CCcceEEECCCCCEEEEEeCCCC
Confidence 5555554 4568999999999977 67778999999999999988877532 457999999999877 5777889
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe---CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA---HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
.|++||+++++....+. +...+.+++|+|+|.+|++++ .++ |++||+++++.+..+..+ ..+.+++|+|+|+
T Consensus 181 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~ 256 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGK 256 (391)
T ss_dssp EEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSS
T ss_pred EEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC---CCccEEEEccCCC
Confidence 99999999998887776 456789999999999998887 456 999999999888777764 4578999999999
Q ss_pred EEEEE-eCC--eEEEEEecccCcceeeeeecCCCCC---------------cceEEEEEcCC------C--CEEEEEeCC
Q 009763 456 YLAVA-SAD--IRVYQVASVKADWNCIKTFPDLSGT---------------GKATCVKFGPD------A--KYIAVGSMD 509 (526)
Q Consensus 456 ~l~~~-~~d--i~v~~~~~~~~~~~~~~~~~~~~~~---------------~~v~~~~~s~~------~--~~l~s~~~d 509 (526)
+|+++ +.+ +++|++. ....+..+..+... ..+........ . ..+...+.|
T Consensus 257 ~l~~s~~~d~~v~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTA----TNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKD 332 (391)
T ss_dssp EEEEEETTTTEEEEEETT----TTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBS
T ss_pred EEEEEcCCCCEEEEEECC----CCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCC
Confidence 88554 445 9999973 34444444332110 01111111111 1 235566778
Q ss_pred CcEEEeeCCCCC
Q 009763 510 RNLRVFGLPGND 521 (526)
Q Consensus 510 g~v~iw~l~~~~ 521 (526)
..+++|++..+.
T Consensus 333 ~~~~~W~~~~g~ 344 (391)
T 1l0q_A 333 ATEWKWDFGDGS 344 (391)
T ss_dssp CSEEEEECSSSC
T ss_pred ceEEEEECCCCc
Confidence 899999997654
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-28 Score=239.60 Aligned_cols=231 Identities=11% Similarity=0.129 Sum_probs=182.3
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCC---------CCe
Q 009763 273 FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---------SGI 343 (526)
Q Consensus 273 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---------~~~ 343 (526)
+.+++.+|++|+.||+|++||+.++ +.+..+. ...|.++.|+|. +++++.|++|++|+.. +++
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~---~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDS---KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSS---SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCC---cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 3457889999999999999999886 3444443 467888889887 9999999999999766 444
Q ss_pred EEEEeecCCCCCCCCCeeEEEEcc--CCcEEEEEeCCCcEEEEECCCCceeeEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.+..+. ..|...|.+++|+| ++.++++|+.||.|++||+++++....+.. +...|++++|+|+|.+|++|+.|
T Consensus 116 ~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 116 VLREIE----VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp EEEEEE----CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred eeEEee----cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 344443 14557899999999 999999999999999999999988766643 45589999999999999999999
Q ss_pred c-EEEEEcCCCccc-eEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCC-CCcce--EEE
Q 009763 421 G-VKLWDLRKLKNF-RSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS-GTGKA--TCV 494 (526)
Q Consensus 421 ~-i~iwd~~~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~-~~~~v--~~~ 494 (526)
+ |++||+++++.. ..+.. .|..+|.+++|+|+|.+|++++.+ +++|++... .....+..+. +...+ .++
T Consensus 192 g~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKD----VGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp SCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSS----TTCBSSCCCBC-----CCEEE
T ss_pred CEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC----CcceeecccccccccccceEE
Confidence 8 999999999877 66655 246899999999999999999977 999998443 2222222110 11222 479
Q ss_pred EEcCCCCEEEEEeC-CCcEEEeeCCCC
Q 009763 495 KFGPDAKYIAVGSM-DRNLRVFGLPGN 520 (526)
Q Consensus 495 ~~s~~~~~l~s~~~-dg~v~iw~l~~~ 520 (526)
+|+|+|++|++++. |+.|++|++...
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EECCCCCEEEEecCCCCcEEEEEEccc
Confidence 99999999999998 999999998654
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.4e-27 Score=225.54 Aligned_cols=275 Identities=13% Similarity=0.090 Sum_probs=190.2
Q ss_pred eEEEEecCCCC---EEEEEeCCCcEEEEeCCCC---cEEEEecccccceeEEEEecCCC-EEEEEeCC---CcEEEEeCC
Q 009763 226 IVSLDIHYSKD---VIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGD-LFLTGSAD---KTVRVWQGS 295 (526)
Q Consensus 226 I~~~~~s~~~~---~l~t~~~dg~v~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d---g~i~iwd~~ 295 (526)
+.++.|-..+- .+++++ ...|++|+..++ +.++++.+|+.+|..+.|.||.. ++.++-.+ +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 44555544333 667776 568999999988 88999999999999999999543 23222211 112211111
Q ss_pred CC-CceeeeEecccCccceEEEEEecCCCEEEEEE--CCCeEEEEeC-CCCeEEEEeecCCCCCCCCCeeEEEEcc---C
Q 009763 296 ED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDL-SSGICLTQVSDAGTDGRPEGYTSAAFHP---D 368 (526)
Q Consensus 296 ~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~ 368 (526)
.. ..+.....-.+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+. .|...++.++|++ +
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-----~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-----LMPPEETILTFAEVQGM 192 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-----ECCCSSCEEEEEEEETS
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeec-----cCCCceeeEEeeccCCC
Confidence 11 0011111113455555554 4565555543 5999999999 4577766665 4556788899998 7
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEecCCC---CCeEEEEECCCCCEE------------EEEeCCc-EEEEEcCCCcc
Q 009763 369 GLILGTGTSEALVKIWDVKSQANVAKFDGHV---GAVTAISFSENGYYL------------ATAAHDG-VKLWDLRKLKN 432 (526)
Q Consensus 369 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~l------------~~~~~d~-i~iwd~~~~~~ 432 (526)
+.+|++|+.|++|+|||+++++.+.++.+|. ..+.+++|+|+|.++ ++|+.|+ |++||..+++.
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 7999999999999999999999999998654 367788999999887 4566777 99999999987
Q ss_pred ceEEec---CCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcc-eEEEEEcCCCCEEEEE
Q 009763 433 FRSFES---SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK-ATCVKFGPDAKYIAVG 506 (526)
Q Consensus 433 ~~~~~~---~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~ 506 (526)
+..+.. ..+...+.+..+ ++.++++++.| ++|||+ ...+++.++.+| ... +.+++|+|||++|++|
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl----~tGk~l~tL~gH--~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL----LLGQCTALLPPV--SDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET----TTCSEEEEECCC----CCCCEEEECSSSSEEEEE
T ss_pred EEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC----CCCcEEEEecCC--CCCeEEEEEECCCCCEEEEE
Confidence 765531 122233433333 48899999988 999998 667788888775 444 4468999999999999
Q ss_pred eCCCcEEEeeC
Q 009763 507 SMDRNLRVFGL 517 (526)
Q Consensus 507 ~~dg~v~iw~l 517 (526)
+.|++|+|||+
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 99999999996
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.9e-27 Score=231.79 Aligned_cols=216 Identities=19% Similarity=0.316 Sum_probs=183.9
Q ss_pred ccCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCC---------cEEEEecccccceeEEEEecC--CCEEEEEeC
Q 009763 219 HKTSKPGIVSLDIHY--SKDVIATGGVDTNAVLFDRPSG---------QIVTTLSGHSKKVTSVKFVTE--GDLFLTGSA 285 (526)
Q Consensus 219 ~~~~~~~I~~~~~s~--~~~~l~t~~~dg~v~vwd~~~~---------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~ 285 (526)
...|...|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|+ +.+|++++.
T Consensus 53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 356889999999999 5999999999999999999876 568888899999999999999 999999999
Q ss_pred CCcEEEEeCCCCCceeeeE----------ecccCccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEEEeecCC
Q 009763 286 DKTVRVWQGSEDGNYDCKH----------TLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAG 352 (526)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~----------~~~~h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (526)
||.|++||+.+........ ....|...+.++.|+|+ +.++++++.|+.+.+|+...+.......
T Consensus 133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 209 (351)
T 3f3f_A 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK--- 209 (351)
T ss_dssp TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE---
T ss_pred CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee---
Confidence 9999999988753211111 01257889999999997 8999999999999999888876533333
Q ss_pred CCCCCCCeeEEEEccCC----cEEEEEeCCCcEEEEECCCC---------------------------------------
Q 009763 353 TDGRPEGYTSAAFHPDG----LILGTGTSEALVKIWDVKSQ--------------------------------------- 389 (526)
Q Consensus 353 ~~~~~~~v~~~~~~~~~----~~l~~g~~dg~i~iwd~~~~--------------------------------------- 389 (526)
..+|...|.+++|+|++ .+|++|+.||.|++||++.+
T Consensus 210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (351)
T 3f3f_A 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289 (351)
T ss_dssp CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence 23677899999999998 89999999999999999874
Q ss_pred -------ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEe
Q 009763 390 -------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 390 -------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 437 (526)
+.+..+.+|...|++++|+|++.+|++++.|+ |++||+.+++....+.
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 56667788999999999999999999999998 9999999877665544
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.5e-27 Score=232.93 Aligned_cols=247 Identities=13% Similarity=0.139 Sum_probs=180.6
Q ss_pred EEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEE-EE
Q 009763 249 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYF-VT 327 (526)
Q Consensus 249 vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l-~s 327 (526)
+|++.+...+..+..|...|++++|+|+|++|++|+.|| +++|+.... ...... +...+..+.+.++++++ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEE
Confidence 466667777777889999999999999999999988775 789998764 333322 22357888898888877 56
Q ss_pred EECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC-ceeeEecCCCCCeEEEE
Q 009763 328 ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAIS 406 (526)
Q Consensus 328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~ 406 (526)
++.|++|++||+.+++.+..+. +...|.++.|+++. ++++ .++.|++||+.++ +.+..+.. +...++
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred ECCccEEEEEECCCCcEEEEEE------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 7788999999999999988775 23579999999875 3333 3789999999988 66666654 445566
Q ss_pred ECCCCCEEEE--EeCCc-EEEEEcCCCc----------------cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---e
Q 009763 407 FSENGYYLAT--AAHDG-VKLWDLRKLK----------------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---I 464 (526)
Q Consensus 407 ~s~~~~~l~~--~~~d~-i~iwd~~~~~----------------~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i 464 (526)
+++ .+++. |+.++ |++||++++. .+..+..| ...|.+++|+|+|.+|++|+.| +
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEE
Confidence 776 56665 46667 9999999765 14555544 7899999999999999999987 7
Q ss_pred EEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 465 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 465 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
+||++ .....+..+....|...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 221 ~iwd~----~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 221 RVFKT----EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEET----TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEC----CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 89997 456677777621247899999999999999999999999999997653
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.2e-26 Score=231.23 Aligned_cols=279 Identities=15% Similarity=0.197 Sum_probs=216.6
Q ss_pred CCCeEEEE---ecCCCCEEEEE--------------eCCC--cEEEEeCCCC--cEEEEecccccceeEEEEecCCCEEE
Q 009763 223 KPGIVSLD---IHYSKDVIATG--------------GVDT--NAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFL 281 (526)
Q Consensus 223 ~~~I~~~~---~s~~~~~l~t~--------------~~dg--~v~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~ 281 (526)
..++..++ |+|+++.+++. +.++ .|..||..++ +.+..+..+. .+.+++|+|++.+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE
Confidence 34567777 77776655432 2333 4555555444 5566666544 467999999777888
Q ss_pred EEeCCCcEEEEeCCCCCceeeeE-----ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC
Q 009763 282 TGSADKTVRVWQGSEDGNYDCKH-----TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 356 (526)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 356 (526)
+++.|+.|++||+.++ +... .+.+|...|.+++|+|++.++++++.|+.|++||+++++.+..+. .+
T Consensus 139 ~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-----~~ 210 (433)
T 3bws_A 139 PLLEDEGMDVLDINSG---QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-----LT 210 (433)
T ss_dssp EBTTSSSEEEEETTTC---CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-----CS
T ss_pred EeCCCCeEEEEECCCC---eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-----CC
Confidence 8888999999999876 3334 345788999999999999999999999999999999998888776 44
Q ss_pred CCCeeEEEEccCCcEEE-EEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe--------CCc-EEEEE
Q 009763 357 PEGYTSAAFHPDGLILG-TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--------HDG-VKLWD 426 (526)
Q Consensus 357 ~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--------~d~-i~iwd 426 (526)
...+.+++|+|++..++ +++.++.|++||+++++.+..+..+ ..+.+++|+|+|.+|++++ .++ |++||
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 56899999999998775 4557999999999999888887754 4699999999999998887 366 99999
Q ss_pred cCCCccceEEecCCCCCCeeEEEEcCCCCEEEEE-eCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEE
Q 009763 427 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA-SAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYI 503 (526)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~-~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 503 (526)
+++++....+.. ...+..++|+|++++++++ +.+ +++|++. .......+.. ...+.+++|+|++++|
T Consensus 290 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~----~~~~~~~~~~---~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 290 MDKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK----EKKVQKSIPV---FDKPNTIALSPDGKYL 359 (433)
T ss_dssp TTTTEEEEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEETT----TTEEEEEEEC---SSSEEEEEECTTSSEE
T ss_pred CCCCcEEeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEECC----CCcEEEEecC---CCCCCeEEEcCCCCEE
Confidence 999887766543 3478899999999876555 555 8899873 4445555542 5678999999999999
Q ss_pred EEEeC---------------CCcEEEeeCCCCC
Q 009763 504 AVGSM---------------DRNLRVFGLPGND 521 (526)
Q Consensus 504 ~s~~~---------------dg~v~iw~l~~~~ 521 (526)
++++. ||.|++||+..++
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCc
Confidence 88876 5799999997653
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3e-27 Score=223.29 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=158.7
Q ss_pred CCCCeEEEEecCC----CCEEEEEeC--------------------CCcEEEEeC-CCCcEEEEecccccceeEEEEec-
Q 009763 222 SKPGIVSLDIHYS----KDVIATGGV--------------------DTNAVLFDR-PSGQIVTTLSGHSKKVTSVKFVT- 275 (526)
Q Consensus 222 ~~~~I~~~~~s~~----~~~l~t~~~--------------------dg~v~vwd~-~~~~~~~~~~~h~~~V~~l~~~~- 275 (526)
+...|.+++|+|+ +.++++++. |+.|++|++ .+|+.+..+.+|...++.++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 3447888899998 777777553 888999998 55888888889999999999998
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCc---cceEEEEEecCCCEE------------EEEECCCeEEEEe
Q 009763 276 --EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT---AEVQAVTVHATNKYF------------VTASLDNTWCFYD 338 (526)
Q Consensus 276 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~l------------~s~s~dg~i~iwd 338 (526)
++.+|++|+.|++|+|||+.++ +++.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred CCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 7789999999999999999987 6777777643 467888999999876 5688899999999
Q ss_pred CCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeE-EEEECCCCCEEEEE
Q 009763 339 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT-AISFSENGYYLATA 417 (526)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~~~ 417 (526)
..+++.+..+......+|...+.+.. .++.++++|+.|++|+|||+.+++.+.++.+|...+. +++|+|+|++|++|
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred CCCCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence 99999877653221234444444333 3488999999999999999999999999998877655 68999999999999
Q ss_pred eCCc-EEEEEc
Q 009763 418 AHDG-VKLWDL 427 (526)
Q Consensus 418 ~~d~-i~iwd~ 427 (526)
+.|+ |+|||+
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 9998 999996
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.9e-25 Score=224.09 Aligned_cols=275 Identities=12% Similarity=0.123 Sum_probs=211.1
Q ss_pred CeEEEEecCCCC-EEEEEe----CCC----cEEEEeC--CCCcEE--EEecccccceeEEEEecC--------------C
Q 009763 225 GIVSLDIHYSKD-VIATGG----VDT----NAVLFDR--PSGQIV--TTLSGHSKKVTSVKFVTE--------------G 277 (526)
Q Consensus 225 ~I~~~~~s~~~~-~l~t~~----~dg----~v~vwd~--~~~~~~--~~~~~h~~~V~~l~~~~~--------------~ 277 (526)
.+...+|.+.|. ++++|+ .+| .++|||+ .+++.+ ..+.+|...+..+++++. +
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 566777887764 666776 467 8999999 888877 458889888888877651 5
Q ss_pred CEEEEEeCC------CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC---eEEEEeCCCCeEEEEe
Q 009763 278 DLFLTGSAD------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQV 348 (526)
Q Consensus 278 ~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg---~i~iwd~~~~~~~~~~ 348 (526)
..++.++.+ +.|++||+.. .....+.+|...|.+++|+|+|++|++++.++ .|++||+.+++... +
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l 218 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 218 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred CEEEEEEecCCCCccceEEEEcCCC----CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence 556665554 7999999975 34556677899999999999999999999885 99999999988754 3
Q ss_pred ecCCCCCCCCCeeEEEEccCCcEEE-EEeCCCc--EEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c---
Q 009763 349 SDAGTDGRPEGYTSAAFHPDGLILG-TGTSEAL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G--- 421 (526)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~--- 421 (526)
. .+...+.+++|+|||+.|+ +++.++. |++||+.+++. ..+..|...+.+++|+|+|++|++++.+ +
T Consensus 219 ~-----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 219 A-----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp E-----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred e-----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 2 3445799999999999777 6666654 99999988775 5666788899999999999999888763 3
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCCCCCcceEEEEE
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
|.+||+.+++.. .+..+ ...+..++|+|+|++|++++.+ +.+|++.. ... ..+..+ ..+.+++|
T Consensus 293 i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~----~~~-~~l~~~---~~~~~~~~ 361 (415)
T 2hqs_A 293 VYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----GGV-QVLSST---FLDETPSL 361 (415)
T ss_dssp EEEEETTSSCCE-ECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT----CCE-EECCCS---SSCEEEEE
T ss_pred EEEEECCCCCEE-EEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC----CCE-EEecCC---CCcCCeEE
Confidence 778898877642 23222 4578899999999999988753 66666522 222 233332 27899999
Q ss_pred cCCCCEEEEEeCCC---cEEEeeCCCCC
Q 009763 497 GPDAKYIAVGSMDR---NLRVFGLPGND 521 (526)
Q Consensus 497 s~~~~~l~s~~~dg---~v~iw~l~~~~ 521 (526)
+|||++|++++.++ .|++|++.++.
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 99999999988877 79999987543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=9.1e-25 Score=226.10 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=221.7
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeC--CCCCceeeeEecc
Q 009763 230 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG--SEDGNYDCKHTLK 307 (526)
Q Consensus 230 ~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~~ 307 (526)
.|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|+|++|++++.|++|++||+ .+. +++..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe
Confidence 3789999999999999999999999999999884333 899999999999999999999999999 554 5666666
Q ss_pred cCccceEEEEEec----CCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCC-----CCC-CCeeEEEEccCC-cEEEEE
Q 009763 308 DHTAEVQAVTVHA----TNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTD-----GRP-EGYTSAAFHPDG-LILGTG 375 (526)
Q Consensus 308 ~h~~~v~~l~~~p----~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~-----~~~-~~v~~~~~~~~~-~~l~~g 375 (526)
+...+..++|+| +|+++++++. +++|.+||..+++.+..+...+.. .|. ..+..+.++|++ .++++.
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 455689999999 9999999884 899999999999998887632110 012 268899999965 556677
Q ss_pred eCCCcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcCCCccceEEecCC--CCCCeeEEE
Q 009763 376 TSEALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESSD--SETPTNSVD 449 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~--~~~~i~~i~ 449 (526)
..++.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++. ++ |.+||+.+++....+.... |......+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 788999999998876543 443 4567889999999998877654 44 9999999999888877532 12222233
Q ss_pred EcCC-CCEEEEEe-CC--eEEEEEeccc---CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe-------CCCcEEEe
Q 009763 450 FDHS-GSYLAVAS-AD--IRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-------MDRNLRVF 515 (526)
Q Consensus 450 ~s~~-~~~l~~~~-~d--i~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg~v~iw 515 (526)
++|+ |.+++++. .+ |.||+.+... ..|+.+.++..+ .+.+..+.|+|++++|++++ .++.|.+|
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence 4777 66666664 23 9999985421 128888988876 55678899999999999987 27899999
Q ss_pred eCCCCCCC
Q 009763 516 GLPGNDAP 523 (526)
Q Consensus 516 ~l~~~~~~ 523 (526)
|+.+.+..
T Consensus 455 d~~~~~~~ 462 (543)
T 1nir_A 455 DLKNLDAK 462 (543)
T ss_dssp ETTCTTSC
T ss_pred ECCCCCCC
Confidence 99876643
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=9.2e-24 Score=205.12 Aligned_cols=277 Identities=13% Similarity=0.159 Sum_probs=199.2
Q ss_pred EecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCCCceeeeEecc
Q 009763 230 DIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDGNYDCKHTLK 307 (526)
Q Consensus 230 ~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~ 307 (526)
.|.++++ .+++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||..++.. ....+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~ 80 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVAIQ 80 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEecc
Confidence 3555555 57778889999999999999988887766677 9999999997666655 89999999987632 145555
Q ss_pred cCccceEEEEEecCCCEEEEEECCC---eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE-EEeCCCc-EE
Q 009763 308 DHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEAL-VK 382 (526)
Q Consensus 308 ~h~~~v~~l~~~p~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~-i~ 382 (526)
.+..+..+++|+|++++++++..++ .|.+||+.+++.+..+... ....+++|+|+|++++ ++..++. |.
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP------YDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC------TTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC------CCccceEECCCCCEEEEEecCCCceEE
Confidence 5666665599999999999555553 8999999999988776531 3568999999997554 4455688 99
Q ss_pred EEECCCCceee----EecCCCCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcCCCcc---ceEEecCCCCCCeeEEEEcCC
Q 009763 383 IWDVKSQANVA----KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 383 iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~---~~~~~~~~~~~~i~~i~~s~~ 453 (526)
+|++.....+. ........+..++|+|+|+++++++. ++ |.+||+.+++. +..+.. ...+..++|+|+
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spd 231 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRD 231 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTT
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCC
Confidence 99987643321 11233456899999999997766654 45 99999999888 666654 356788999999
Q ss_pred CCEEEEEeCC---eEEEEEecccCcceeeeeecCC--CCC---cceEEEEEcCCCCEEEEEeC-CCcEEEeeCCCC
Q 009763 454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDL--SGT---GKATCVKFGPDAKYIAVGSM-DRNLRVFGLPGN 520 (526)
Q Consensus 454 ~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~s~~~-dg~v~iw~l~~~ 520 (526)
|+++++++.. +.+|+... .....+..+... .+. .....++|+|||++|++++. ++.|.+|++...
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLS--GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTT--TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCEEEEEEcCCCEEEEEECCC--CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9988877654 77777632 222223322211 011 12356899999998876654 569999999764
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.2e-24 Score=233.14 Aligned_cols=286 Identities=11% Similarity=0.100 Sum_probs=215.7
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CC-----cEEEEeCCCCcEEEEeccccc------------------------ceeEEE
Q 009763 223 KPGIVSLDIHYSKDVIATGGV-DT-----NAVLFDRPSGQIVTTLSGHSK------------------------KVTSVK 272 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~-dg-----~v~vwd~~~~~~~~~~~~h~~------------------------~V~~l~ 272 (526)
...|.+++|+|+|++|++++. || .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 899999999988777765543 388999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC
Q 009763 273 FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG 352 (526)
Q Consensus 273 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (526)
|+|||++|++++. +.|++||+.++.. .....+..|...+.+++|+|+|++|++++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999887 9999999987510 03345667888899999999999999887 4699999999987654432110
Q ss_pred CC---CC--------CCCeeEEEEccCCcEEEEEeCCC---------------------------------cEEEEECCC
Q 009763 353 TD---GR--------PEGYTSAAFHPDGLILGTGTSEA---------------------------------LVKIWDVKS 388 (526)
Q Consensus 353 ~~---~~--------~~~v~~~~~~~~~~~l~~g~~dg---------------------------------~i~iwd~~~ 388 (526)
.. +. ...+..+.|+|||+.|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 00 00 01147899999999999987665 789999988
Q ss_pred -CceeeEec--CCCCCeEEEEECCCCCEEEEEeC-----Cc-EEEEEcCCCccceEEecCCCCC---CeeEEEEcCCCCE
Q 009763 389 -QANVAKFD--GHVGAVTAISFSENGYYLATAAH-----DG-VKLWDLRKLKNFRSFESSDSET---PTNSVDFDHSGSY 456 (526)
Q Consensus 389 -~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~~~~~~---~i~~i~~s~~~~~ 456 (526)
++...... .+...+..++| |||++|++++. +. |++||+.+++....+..+. .. .+..+.|+|+|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEECTTSCE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEECCCCeE
Confidence 77554432 36678999999 99999987654 23 9999999988766655432 11 4568999999998
Q ss_pred EEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEE-EEcCCCCEEEE-EeCCC--cEEEeeCCC
Q 009763 457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCV-KFGPDAKYIAV-GSMDR--NLRVFGLPG 519 (526)
Q Consensus 457 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~v~iw~l~~ 519 (526)
+++++.+ .+||.++... . ...+..+ ...+..+ .|+|+|+.|+. ++.++ .+++|+++.
T Consensus 351 ~~~~~~~g~~~l~~~~~~~---~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKG---K-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEECTTSSCEEEEECSSS---C-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEEecCCCccEEEEEcCCC---C-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 8888777 7899885322 2 3444443 5567777 59999997755 44555 899999864
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=7.6e-24 Score=219.18 Aligned_cols=283 Identities=14% Similarity=0.140 Sum_probs=215.7
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeC--CCCcEEEEecccccceeEEEEec----CCCEEEEEeC-CCcEEEEeCCCCC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDR--PSGQIVTTLSGHSKKVTSVKFVT----EGDLFLTGSA-DKTVRVWQGSEDG 298 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~--~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s~-dg~i~iwd~~~~~ 298 (526)
+.+++|+|+|++|++++.|+.|.+||+ .+++.+..+.. ...+..++|+| +|+++++++. +++|.+||..+.
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~- 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL- 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-
Confidence 889999999999999999999999999 88888888884 45689999999 9999998884 899999999876
Q ss_pred ceeeeEeccc----------Cc-cceEEEEEecCCCE-EEEEECCCeEEEEeCCCCeEEE--EeecCCCCCCCCCeeEEE
Q 009763 299 NYDCKHTLKD----------HT-AEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 299 ~~~~~~~~~~----------h~-~~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~ 364 (526)
+++..+.. |. ..+..+.++|++.. +++...++.|.+||+.+.+.+. .+. +...+..+.
T Consensus 259 --~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~------~~~~~~~~~ 330 (543)
T 1nir_A 259 --EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG------AAPFLHDGG 330 (543)
T ss_dssp --CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE------CCSSCCCEE
T ss_pred --ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec------cCcCccCce
Confidence 44554432 22 37899999997765 5566678999999998865443 332 124577899
Q ss_pred EccCCcEEEEE-eCCCcEEEEECCCCceeeEecC----CCCCeEEEEECCC-CCEEEEEe-CCc-EEEEEcCC-------
Q 009763 365 FHPDGLILGTG-TSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSEN-GYYLATAA-HDG-VKLWDLRK------- 429 (526)
Q Consensus 365 ~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~-~~~l~~~~-~d~-i~iwd~~~------- 429 (526)
|+|+|++++++ ..++.|.+||+.+++.+..+.. |.+....+ ++|+ |..++++. .++ |.+||+.+
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence 99999977655 4588999999999998888764 44333333 4676 66666665 345 99999988
Q ss_pred CccceEEecCCCCCCeeEEEEcCCCCEEEEEe--------CC-eEEEEEecccCcceeee--eecC-CCCCcceEEEEEc
Q 009763 430 LKNFRSFESSDSETPTNSVDFDHSGSYLAVAS--------AD-IRVYQVASVKADWNCIK--TFPD-LSGTGKATCVKFG 497 (526)
Q Consensus 430 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~--------~d-i~v~~~~~~~~~~~~~~--~~~~-~~~~~~v~~~~~s 497 (526)
.+.++.+..+ ...+..+.|+|+|++|++++ .+ |.||++.........+. ...+ ..+...+..+.|+
T Consensus 410 ~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 487 (543)
T 1nir_A 410 WKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 487 (543)
T ss_dssp TSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC
T ss_pred CeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCC
Confidence 7888888876 45678899999999999986 23 99999855433212211 0000 1235689999999
Q ss_pred CCCCEEEEEe-----CCCcEEEeeCCCCC
Q 009763 498 PDAKYIAVGS-----MDRNLRVFGLPGND 521 (526)
Q Consensus 498 ~~~~~l~s~~-----~dg~v~iw~l~~~~ 521 (526)
|+|+.|+++. .|+.|.|||..+.+
T Consensus 488 ~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 488 KRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp SSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 9999998763 37999999988754
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.7e-23 Score=203.80 Aligned_cols=271 Identities=13% Similarity=0.193 Sum_probs=193.2
Q ss_pred EEEEEeCCCcEEEEeCC-CCc--EEEEecccccceeEEEEecCCCEEEEEeCC-CcEEEEeCCC-CCceeeeEecccCcc
Q 009763 237 VIATGGVDTNAVLFDRP-SGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVRVWQGSE-DGNYDCKHTLKDHTA 311 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~-~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-g~i~iwd~~~-~~~~~~~~~~~~h~~ 311 (526)
++++++.++.|.+|++. ++. .+..+ .|...+.+++|+|++++|++++.+ +.|.+|++.. .+....+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 44455779999999985 332 33333 467789999999999988888876 9999999972 12334444554443
Q ss_pred ceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCe---EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEEEC
Q 009763 312 EVQAVTVHATNKYFVTASL-DNTWCFYDLSSGI---CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDV 386 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~ 386 (526)
.+..++|+|+++++++++. ++.|.+||+..+. ....+. ....+.+++|+|+++.+++++ .++.|.+||+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE------GLDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc------CCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 7899999999998877765 8899999995333 333332 123588899999998888777 8899999999
Q ss_pred CC-Cceee----EecC-CCCCeEEEEECCCCCEEEEEe-CCc-EEEEEcCC--Ccc--ceEEecCC----CCCCeeEEEE
Q 009763 387 KS-QANVA----KFDG-HVGAVTAISFSENGYYLATAA-HDG-VKLWDLRK--LKN--FRSFESSD----SETPTNSVDF 450 (526)
Q Consensus 387 ~~-~~~~~----~~~~-~~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~--~~~--~~~~~~~~----~~~~i~~i~~ 450 (526)
.+ ++... .+.. ....+..++|+|+|.++++++ .++ |.+||+.. ++. ...+.... ....+..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence 87 54432 2222 334788999999999877665 455 99999954 332 22222111 1235668999
Q ss_pred cCCCCEEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEeeCC
Q 009763 451 DHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLRVFGLP 518 (526)
Q Consensus 451 s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~l~ 518 (526)
+|+|++|+++.. + +.+|++.........+..+... ..+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999998886653 3 9999986433345555555442 2388999999999888887 68999999665
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=5.8e-23 Score=201.12 Aligned_cols=267 Identities=11% Similarity=0.093 Sum_probs=210.0
Q ss_pred CCeEEEEecCCCCEEEEEeC-------CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEE-EEeCCCcEEEEeCC
Q 009763 224 PGIVSLDIHYSKDVIATGGV-------DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGS 295 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~-------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~ 295 (526)
..+..++|+|+++++++++. ++.|.+||..+++.+..+... ..+..++|+|++++++ ++..++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 46889999999998888774 568999999999988887643 4578899999999554 55568999999998
Q ss_pred CCCceeeeEecccCcc---------ceEEEEEecCCCEEEEEE--CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE
Q 009763 296 EDGNYDCKHTLKDHTA---------EVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (526)
++ +.+..+..+.. .+.++.|+|+++++++++ .++.|.+||+.+++.+..+.. +...+.+++
T Consensus 120 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~ 191 (353)
T 3vgz_A 120 TG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-----TGKMSTGLA 191 (353)
T ss_dssp TC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----CCTTCCCCE
T ss_pred CC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----CCCccceEE
Confidence 86 44444443322 278999999999887776 478999999999998877751 223477899
Q ss_pred EccCCcEEEEEeCCCcEEEEECCCCceeeEecC----CCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEec
Q 009763 365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 365 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~ 438 (526)
|+|+++.+++++.++.|.+||+.+++....+.. +...+..++|+|+|.++++++.+ + |.+||+.+++....+..
T Consensus 192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 192 LDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 999999999999999999999999988877654 45568889999999988777765 5 99999999988887775
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 439 SDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 439 ~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
.. ...+.|+|+|+++++++. + +.+|+. .....+..+.. ...+.+++|+|||++|+++..++
T Consensus 272 ~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 272 PE----SLAVLFNPARNEAYVTHRQAGKVSVIDA----KSYKVVKTFDT---PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SS----CCCEEEETTTTEEEEEETTTTEEEEEET----TTTEEEEEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred CC----CceEEECCCCCEEEEEECCCCeEEEEEC----CCCeEEEEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence 42 256999999998777764 3 888886 44555555544 34689999999999887776653
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.2e-23 Score=204.36 Aligned_cols=266 Identities=11% Similarity=0.020 Sum_probs=202.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeccccc--ceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCCceeeeEeccc----
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSK--KVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKD---- 308 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~---- 308 (526)
+++++++.++.|.+||..+++.+..+..... .+..++|+|+++.+ ++++.++.|.+||+.++ +.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEcCCcc
Confidence 4789999999999999999988887763322 48899999999765 55566889999999876 33333331
Q ss_pred -CccceEEEEEecCCCEEEEEE------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 309 -HTAEVQAVTVHATNKYFVTAS------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 309 -h~~~v~~l~~~p~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
|...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSCEEEE
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC------CCCcceeEECCCCCEEEEe
Confidence 123677899999999998886 679999999999988777652 1357788999999988887
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-------------------------cEEEEEcCCC
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-------------------------GVKLWDLRKL 430 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-------------------------~i~iwd~~~~ 430 (526)
++.|.+||+.+++....+..+.. ...+.|+|+|..++..+.. .|.+||+.++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred --CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 68999999999988777764431 1123789998877655433 2579999988
Q ss_pred ccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 431 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
+.. .+....+...+..++|+|+|++++++...+.+|++ .....+..+.. ...+.+++|+|+|++|++++.++
T Consensus 230 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 230 EMA-MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL----EKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp CEE-EEEEEECSSCEEEEEECTTSSEEEEEESEEEEEET----TTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSS
T ss_pred Cce-EeecCCCCCceeeEEECCCCCEEEEeCCeEEEEEC----CCCcCcceecC---CCceeeEEECCCCCEEEEEcCCC
Confidence 765 33333334578899999999999999555999997 34455555443 34578999999999999999999
Q ss_pred cEEEeeCCCCC
Q 009763 511 NLRVFGLPGND 521 (526)
Q Consensus 511 ~v~iw~l~~~~ 521 (526)
.|++||+.+++
T Consensus 302 ~i~v~d~~~~~ 312 (337)
T 1pby_B 302 DLAAYDAETLE 312 (337)
T ss_dssp EEEEEETTTCC
T ss_pred cEEEEECcCCc
Confidence 99999998754
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=8.4e-23 Score=204.90 Aligned_cols=246 Identities=13% Similarity=0.110 Sum_probs=188.4
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCC---cEEEEeCCCCCceeeeEe
Q 009763 235 KDVIATGGVD------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK---TVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 235 ~~~l~t~~~d------g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~ 305 (526)
+..++.++.+ +.|++||+. +.....+.+|...|.+++|+|+|+.|++++.|+ .|++||+.++ +. ..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---~~-~~ 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AV-RQ 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CE-EE
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---cE-EE
Confidence 5566655543 799999997 455677778999999999999999999999885 9999999875 33 34
Q ss_pred cccCccceEEEEEecCCCEEE-EEECCCe--EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-CC--
Q 009763 306 LKDHTAEVQAVTVHATNKYFV-TASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA-- 379 (526)
Q Consensus 306 ~~~h~~~v~~l~~~p~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg-- 379 (526)
+..|...+.+++|+|+|++|+ +++.++. |++||+.+++.. .+. .+...+.+++|+|||+.|++++. ++
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-----~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-----DGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-----CCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-----CCCCcccceEECCCCCEEEEEECCCCCc
Confidence 566888999999999999887 5665554 999999988753 332 44567999999999998888776 44
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
.|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ . |.+||+.+++.. .+..+ ..+.+++|+|+|+
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~---~~~~~~~~spdg~ 366 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST---FLDETPSLAPNGT 366 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS---SSCEEEEECTTSS
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC---CCcCCeEEcCCCC
Confidence 678889887764 3455566788999999999999888764 3 999999987763 33322 3789999999999
Q ss_pred EEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC
Q 009763 456 YLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 501 (526)
Q Consensus 456 ~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 501 (526)
+|++++.+ ..||.++.. ......+..+ .+.|.+++|+|.-.
T Consensus 367 ~l~~~s~~~~~~~l~~~d~~---g~~~~~l~~~--~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVSTD---GRFKARLPAT--DGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEEETTEEEEEEEETT---SCCEEECCCS--SSEEEEEEECCCCC
T ss_pred EEEEEEcCCCccEEEEEECC---CCcEEEeeCC--CCCCcCCccccccc
Confidence 99988765 355555432 3344555554 78899999999654
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=4.2e-24 Score=230.34 Aligned_cols=289 Identities=9% Similarity=0.043 Sum_probs=208.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccc---ceeEEEEecCCCEEEEEeCC---------CcEEEE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTEGDLFLTGSAD---------KTVRVW 292 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~d---------g~i~iw 292 (526)
.+.+++|+|+|+++++ +.||.|++||..+++....+.+|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997776 6899999999999988888887765 49999999999999999774 788899
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC--------------CC
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR--------------PE 358 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~ 358 (526)
|+.++.. ..+....+|...+..++|+|+|+.|+.++. +.|++||+.+++.......... .. ..
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-GVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT-TTEEEEECCHHHHHTTSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC-CceECcccceeEEEEecc
Confidence 9987532 223333455556889999999999999886 7999999998876654432100 00 01
Q ss_pred CeeEEEEccCCcEEEEEeCCC----------------------------------cEEEEECCCCceeeEecCC------
Q 009763 359 GYTSAAFHPDGLILGTGTSEA----------------------------------LVKIWDVKSQANVAKFDGH------ 398 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~dg----------------------------------~i~iwd~~~~~~~~~~~~~------ 398 (526)
.+.++.|+|||+.|++++.++ .|++||+.+++....+..+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 347899999999999887543 7999999988765566543
Q ss_pred CCCeEEEEECCCCCEEEEEeCC----c-EEEEEcCCCccceEEecCCCCCCe----eEEEEcCCCCEEEEE-e-CC----
Q 009763 399 VGAVTAISFSENGYYLATAAHD----G-VKLWDLRKLKNFRSFESSDSETPT----NSVDFDHSGSYLAVA-S-AD---- 463 (526)
Q Consensus 399 ~~~i~~l~~s~~~~~l~~~~~d----~-i~iwd~~~~~~~~~~~~~~~~~~i----~~i~~s~~~~~l~~~-~-~d---- 463 (526)
...+..++|+|||++|++.... . |++||+.+++....+.... ...+ ..+.|+|+|+.|+.. + .+
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc-CCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 5678999999999988776432 3 9999999888765554321 2222 378999999977754 3 22
Q ss_pred --eEEEEEe-cccCcceeeeeecCCCCCcceEE-EEEcCCCCEEEEEeCC---CcEEEeeCCCC
Q 009763 464 --IRVYQVA-SVKADWNCIKTFPDLSGTGKATC-VKFGPDAKYIAVGSMD---RNLRVFGLPGN 520 (526)
Q Consensus 464 --i~v~~~~-~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---g~v~iw~l~~~ 520 (526)
.+||.++ ...........+... ...+.. ++|+|||+.|+..+.+ +.+++|+++..
T Consensus 333 ~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred ceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 3677775 221110012222221 334444 6999999999876655 78999998643
No 137
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=3.4e-23 Score=208.56 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=199.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----------cEEEE-----ecccccceeEEEEecCCCEEE----EEe
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----------QIVTT-----LSGHSKKVTSVKFVTEGDLFL----TGS 284 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~----------~~~~~-----~~~h~~~V~~l~~~~~~~~l~----s~s 284 (526)
..+..+++++++.++++++.+| +++|+.... ..+.. ...+...|.+++|+|++++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578999999999999999888 888764210 11111 113567799999999999999 788
Q ss_pred CCCcEEEEeCCCC--------CceeeeEecccCccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC
Q 009763 285 ADKTVRVWQGSED--------GNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 355 (526)
Q Consensus 285 ~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 355 (526)
.|+.|+|||+.+. ........+.+|...|.+++|+|+ +.+|++++.||+|++||++++....... +
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-----~ 190 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-----P 190 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-----C
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-----C
Confidence 8999999998653 112235667789999999999997 7899999999999999999986654443 4
Q ss_pred CCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCC-------CCCeEEEEECCCCCEEEEEe-CC------c
Q 009763 356 RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-------VGAVTAISFSENGYYLATAA-HD------G 421 (526)
Q Consensus 356 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~l~~~~-~d------~ 421 (526)
|...+.+++|+|+|.+|++|+.||.|++||++ ++....+..+ ...|.++.|++++.++++.+ .+ .
T Consensus 191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 56789999999999999999999999999998 5555555433 23799999999988876543 22 1
Q ss_pred -EEEEEcCCCcc--ceEEecC--------CCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeee------
Q 009763 422 -VKLWDLRKLKN--FRSFESS--------DSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKT------ 481 (526)
Q Consensus 422 -i~iwd~~~~~~--~~~~~~~--------~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~------ 481 (526)
+++||+++.+. ...+... ....+...+.+-++.+++++++.. +.|.........|.....
T Consensus 270 ~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra 349 (434)
T 2oit_A 270 DVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRA 349 (434)
T ss_dssp EEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCC
T ss_pred ceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccc
Confidence 89999986531 1111110 112222334444777888887765 666665332222322111
Q ss_pred ---ecCCCCCcceEEEEEcC---------------CCCEEEEEeCCCcEEEeeCCC
Q 009763 482 ---FPDLSGTGKATCVKFGP---------------DAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 482 ---~~~~~~~~~v~~~~~s~---------------~~~~l~s~~~dg~v~iw~l~~ 519 (526)
+........+..+++.- -.-.|++-+.||.+..|.+-.
T Consensus 350 ~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 350 ELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp BCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11111233344454421 124678888999999998744
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=5.4e-23 Score=221.03 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=205.7
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC-----CC
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-----DG 298 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~ 298 (526)
..|.+++|+|+ +.++.+. ++.|++||+.+++... +..+...+.+++|+|||+.|+++ .|+.|++||+.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g- 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS- 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC-
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC-
Confidence 57999999999 6666654 6999999998876654 44467779999999999999885 679999999987 5
Q ss_pred ceeeeEecccCccc--------------eEEEEEecCCCEEEEEE---------------------------------CC
Q 009763 299 NYDCKHTLKDHTAE--------------VQAVTVHATNKYFVTAS---------------------------------LD 331 (526)
Q Consensus 299 ~~~~~~~~~~h~~~--------------v~~l~~~p~~~~l~s~s---------------------------------~d 331 (526)
........+... +.++.|+|+|++|++++ .+
T Consensus 157 --~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 157 --RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp --CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred --CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 333333333332 48999999999999988 45
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC-----cEEEEECCCCceeeEec-C-CCC---C
Q 009763 332 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQANVAKFD-G-HVG---A 401 (526)
Q Consensus 332 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~ 401 (526)
..|.+||+.+++...... ...+...+.+++|+|||+.|++++.++ .|.+||+.+++....+. . +.. .
T Consensus 235 ~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 789999999987654332 113456789999999999999887765 89999999884333332 1 221 3
Q ss_pred eEEEEECC--CCCEEEEEeCCc-EEEEEcC-CCccceEEecCCCCCCeeE-EEEcCCCCEEEEEeCC-----eEEEEEec
Q 009763 402 VTAISFSE--NGYYLATAAHDG-VKLWDLR-KLKNFRSFESSDSETPTNS-VDFDHSGSYLAVASAD-----IRVYQVAS 471 (526)
Q Consensus 402 i~~l~~s~--~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~i~~-i~~s~~~~~l~~~~~d-----i~v~~~~~ 471 (526)
+..+.|+| +|+++++++.++ ++||++. .+.....+..+ ...+.. +.|+|+|+.|++++.+ ..||.++.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 46789999 999999888887 8888776 45555555433 455666 7999999988776654 48888865
Q ss_pred ccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC----CcEEEeeCCCCC
Q 009763 472 VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD----RNLRVFGLPGND 521 (526)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~l~~~~ 521 (526)
..... ..+. +...+.+++|+|||++|+.++.+ +.|++|++.++.
T Consensus 390 ~~~~~---~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 390 KGGKT---KDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCCCC---EESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCc---eecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 43322 2222 25568899999999988876544 569999987653
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=3.7e-23 Score=196.67 Aligned_cols=253 Identities=11% Similarity=0.155 Sum_probs=184.8
Q ss_pred EEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC-CCceeeeEecccC-ccceEEEE
Q 009763 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDH-TAEVQAVT 317 (526)
Q Consensus 240 t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~h-~~~v~~l~ 317 (526)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ + ........| ...+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP---SPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---SCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---CceEeccccccccccceE
Confidence 3457899999999987766 4555889999999999999999987 78999999987 5 344444444 46789999
Q ss_pred EecCCCEEEEEEC--C--CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE-EEeCCCcEEEEECCC-Cce
Q 009763 318 VHATNKYFVTASL--D--NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEALVKIWDVKS-QAN 391 (526)
Q Consensus 318 ~~p~~~~l~s~s~--d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~-~~~ 391 (526)
|+|++++|++++. + ..|..|++.++. ...+. ....+..++|+|+++.|+ ++..++.+.+|++.. ...
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 9999999999993 3 445555555554 23332 123488899999998777 777899999998642 233
Q ss_pred eeEecCCCCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcC-CCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----
Q 009763 392 VAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----- 463 (526)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~-~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----- 463 (526)
...+..+...+.++.|+|+|.+|+.++. ++ +.+|++. .......+..+ ...+..+.|+|+|++|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 4556667788999999999998887764 55 8888876 44444444433 4578899999999999887653
Q ss_pred --------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC
Q 009763 464 --------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 510 (526)
Q Consensus 464 --------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 510 (526)
+.+|++. ......+..+..+ ...+.+++|+|++++|++++.+.
T Consensus 243 ~~~~~~~~l~~~d~~--~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMD--GGNVETLFDLFGG--QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETT--SCSCEEEEEEEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecC--CCCceeeeccCCC--CcccccceECCCCCEEEEEEecc
Confidence 5566552 2333334443333 56788899999999998887654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.8e-22 Score=195.23 Aligned_cols=270 Identities=15% Similarity=0.210 Sum_probs=190.0
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC-CcEEEEeCC--CCc--EEEEecccccceeEEEEecCCCEEEEEeC-CCcEEEEeCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVD-TNAVLFDRP--SGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGS 295 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~d-g~v~vwd~~--~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~ 295 (526)
|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 45678899999999988888876 999999987 554 344555444 7899999999998776664 8899999995
Q ss_pred CCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCC-CeEEEEe--ecCCCCCCCCCeeEEEEccCCcE
Q 009763 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSS-GICLTQV--SDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
.+........+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++..... ... . .....+..++|+|++.+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-T-VEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-C-STTCCEEEEEECTTSSE
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-c-CCCCCcceEEECCCCCE
Confidence 32222444444433 4588999999999888887 899999999987 5443221 110 0 11246788999999986
Q ss_pred EEEE-eCCCcEEEEECCC--Cce--eeEec---CC---CCCeEEEEECCCCCEEEEEe-CCc-EEEEEcCC----Cccce
Q 009763 372 LGTG-TSEALVKIWDVKS--QAN--VAKFD---GH---VGAVTAISFSENGYYLATAA-HDG-VKLWDLRK----LKNFR 434 (526)
Q Consensus 372 l~~g-~~dg~i~iwd~~~--~~~--~~~~~---~~---~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~----~~~~~ 434 (526)
++++ ..++.|.+||+.. ++. ...+. .. ...+..++|+|+|++|+++. .++ |.+||+.. .+.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 6555 4789999999954 332 22222 11 23567899999998887555 456 99999982 23333
Q ss_pred EEecCCCCCCeeEEEEcCCCCEEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC
Q 009763 435 SFESSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 501 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 501 (526)
.+... ..+..++|+|+|++|++++. + +.+|+++........+..+.. .....+++|.++.+
T Consensus 272 ~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~---g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 272 FQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV---GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC---SSSCCEEEEEEEC-
T ss_pred eecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc---CCCCeeEEEEcccC
Confidence 44332 34889999999999998884 3 999988755445555555543 23566778877543
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=2.8e-21 Score=189.06 Aligned_cols=270 Identities=11% Similarity=0.140 Sum_probs=184.2
Q ss_pred CCcEEEEeC--CCCcEEE-EecccccceeEEEEecCCCEEEEEeC---CCcEEEEeCCCCCceeeeEecccCccceEEEE
Q 009763 244 DTNAVLFDR--PSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317 (526)
Q Consensus 244 dg~v~vwd~--~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 317 (526)
++.|.+|++ .+++... ....+...+..++|+|+|+ |++++. ++.|.+|++.++ ....+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEE
Confidence 455777765 4455433 2334556788999999999 555544 689999999653 3345555556777889999
Q ss_pred EecCCCEEEEEE-CCCeEEEEeCCC-Ce--EEEEeecCCCC----CCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC-C
Q 009763 318 VHATNKYFVTAS-LDNTWCFYDLSS-GI--CLTQVSDAGTD----GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-S 388 (526)
Q Consensus 318 ~~p~~~~l~s~s-~dg~i~iwd~~~-~~--~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~ 388 (526)
|+|+|++|++++ .++.+.+||+.. +. .+..+...... .....+.+++|+|+|+++++...++.|.+||+. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 999999998888 689999999963 22 23333211110 112357889999999977777778899999998 4
Q ss_pred Ccee--eEecC-CCCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcCC--Ccc--ceEEecCCC----CCCeeEEEEcCCCC
Q 009763 389 QANV--AKFDG-HVGAVTAISFSENGYYLATAAH-DG-VKLWDLRK--LKN--FRSFESSDS----ETPTNSVDFDHSGS 455 (526)
Q Consensus 389 ~~~~--~~~~~-~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~--~~~--~~~~~~~~~----~~~i~~i~~s~~~~ 455 (526)
++.. ..+.. ....+..++|+|+|++|++++. ++ |.+|++.. ++. ...+..... ...+..++|+|+|+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 5432 22222 2336788999999997777654 44 99999874 332 222222211 14588899999999
Q ss_pred EEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC-CcEEEeeCC
Q 009763 456 YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-RNLRVFGLP 518 (526)
Q Consensus 456 ~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~v~iw~l~ 518 (526)
+|++++. + +.+|+++.. .....+..+..+ ...+.+++|+|||++|++++.+ +.|.+|+++
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTAD-GHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEETTTEEEEEEECGG-GCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCC-CcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 8865543 3 999998532 234455555443 4467899999999998888765 899999664
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.6e-22 Score=218.67 Aligned_cols=277 Identities=11% Similarity=0.070 Sum_probs=205.0
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.|.+++|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|+.++. +.|++||+.++ ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g---~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG---RQ 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT---EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC---CE
Confidence 4789999999999999886 999999998873 44556778888999999999999998874 68999999875 33
Q ss_pred eEecccCccc----------------eEEEEEecCCCEEEEEECCC---------------------------------e
Q 009763 303 KHTLKDHTAE----------------VQAVTVHATNKYFVTASLDN---------------------------------T 333 (526)
Q Consensus 303 ~~~~~~h~~~----------------v~~l~~~p~~~~l~s~s~dg---------------------------------~ 333 (526)
......+... +..+.|+|+|++|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 3333333322 47899999999999988765 8
Q ss_pred EEEEeCCC-CeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-----CCcEEEEECCCCceeeEecCCCC----CeE
Q 009763 334 WCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----EALVKIWDVKSQANVAKFDGHVG----AVT 403 (526)
Q Consensus 334 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~ 403 (526)
|.+||+.+ ++....... ..+...+..++| |||+.|+++.. ++.|++||+.+++....+..+.. .+.
T Consensus 265 l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 89999988 765443321 135567899999 99999887654 56799999999987766654432 456
Q ss_pred EEEECCCCCEEEEEeCCc-EEEEEcC-CCccceEEecCCCCCCeeEE-EEcCCCCEEEEEeC-C----eEEEEEecccCc
Q 009763 404 AISFSENGYYLATAAHDG-VKLWDLR-KLKNFRSFESSDSETPTNSV-DFDHSGSYLAVASA-D----IRVYQVASVKAD 475 (526)
Q Consensus 404 ~l~~s~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~i~~i-~~s~~~~~l~~~~~-d----i~v~~~~~~~~~ 475 (526)
.++|+|+|+++++++.++ +.||.+. .+. ...+..+ ...+..+ .|+|+|+.|++.+. + ++||.++....
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~- 416 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG- 416 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC-
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC-
Confidence 899999999888888887 7777665 233 4444333 5567777 59999998765543 2 78999854322
Q ss_pred ceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC----CcEEEeeCCC
Q 009763 476 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD----RNLRVFGLPG 519 (526)
Q Consensus 476 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~l~~ 519 (526)
....+.. ...+.+++|+|||++|+....+ +.+.+|+..+
T Consensus 417 --~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 417 --QPQRLSK---APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp --CCEECCC---SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred --Ceeeccc---CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 2233332 4467899999999998876544 4688888754
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.8e-22 Score=191.91 Aligned_cols=233 Identities=12% Similarity=0.109 Sum_probs=178.7
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEeccc-ccceeEEEEecCCCEEEEEe--CCCcEEEEeCCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGH-SKKVTSVKFVTEGDLFLTGS--ADKTVRVWQGSE 296 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~ 296 (526)
.|...|.+++|+|++++|++++ ++.|++||+.+ ++......+| ...+.+++|+|++++|++++ .++.+.||.+..
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 3577899999999999999987 88999999998 8877776666 47789999999999999998 445566665532
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEE-EEECCCeEEEEeC--CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYDL--SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
.. .....+..+ ..+..++|+|++++|+ +++.++.+.+|++ .++.. ..+. .+...+.++.|+|++..|+
T Consensus 118 ~~--~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~-----~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 118 TG--GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT-----HGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp TC--CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC-----CSSSCEEEEEECTTSSEEE
T ss_pred CC--CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc-----cCCCccccceECCCCCEEE
Confidence 21 123334433 3489999999999877 7788999999985 34433 2322 3456789999999999877
Q ss_pred EEe-CCCcEEEEECC-CCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-----------c-EEEEEcCCCccceEEecC
Q 009763 374 TGT-SEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENGYYLATAAHD-----------G-VKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 374 ~g~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-----------~-i~iwd~~~~~~~~~~~~~ 439 (526)
+++ .++.+.+|++. .+.....+..+...+.++.|+|+|.+|++++.+ . |.+||+.+++........
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 268 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF 268 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence 665 58999999986 456667777777889999999999998887764 3 999999987764444322
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 440 DSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
.+...+..+.|+|+|++|++++.+
T Consensus 269 ~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 269 GGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCcccccceECCCCCEEEEEEec
Confidence 235678899999999999988754
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=6.6e-22 Score=221.43 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=214.2
Q ss_pred CCCeEEEEec-CCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccc-ceeEEEEecCCCEEEEEeCCCcEE-EEeCCCCCc
Q 009763 223 KPGIVSLDIH-YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVR-VWQGSEDGN 299 (526)
Q Consensus 223 ~~~I~~~~~s-~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~dg~i~-iwd~~~~~~ 299 (526)
...+.+++|+ |+|++|++++ ++.+.+|+...+... .+..|.. .+.+++|+ +|+.|++++.++.+. +|++.++
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-- 369 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-- 369 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--
Confidence 3468999999 9999999888 889999999877654 4666777 89999999 999999999888888 9998764
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
. ...+.+|...+..++|+|+|++|++++.++.|++||+.+++...... .|...+.+++|+|||++|++++.++
T Consensus 370 -~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 370 -K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----SREAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp -C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred -C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-----CCCCCccceEECCCCCeEEEEecCc
Confidence 2 23344788899999999999999999999999999999998776654 3456788999999999998887654
Q ss_pred ----------cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc----------------
Q 009763 380 ----------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---------------- 432 (526)
Q Consensus 380 ----------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~---------------- 432 (526)
.|++||+.+++ ...+..|...+..++|+|+|++|+.++.++ ..+|+......
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 521 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred cccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCC
Confidence 89999999887 667777888899999999999999888765 66666432211
Q ss_pred -------------------------ceEEecCCCCCCeeEEEEcCCCCEEEE-----------Ee--CCeEEEEEecccC
Q 009763 433 -------------------------FRSFESSDSETPTNSVDFDHSGSYLAV-----------AS--ADIRVYQVASVKA 474 (526)
Q Consensus 433 -------------------------~~~~~~~~~~~~i~~i~~s~~~~~l~~-----------~~--~di~v~~~~~~~~ 474 (526)
........+...+..+.++|+|.++++ .+ ....+|.++....
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 001111112356789999999988875 11 1266666654333
Q ss_pred cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 475 DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
....+. ..+.+++|+|||++|++++.+ .|++|++..+.
T Consensus 602 ~~~~l~--------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 602 KVTEVK--------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CEEEEE--------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cEEEee--------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 322221 457889999999999999866 89999997765
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=3.8e-20 Score=182.00 Aligned_cols=279 Identities=13% Similarity=0.173 Sum_probs=189.6
Q ss_pred CCEEEEEe----CCCcEEEEeC--CCCcEEEEecccccceeEEEEecCCCEEEEEeCC----CcEEEEeCCCC-Cceeee
Q 009763 235 KDVIATGG----VDTNAVLFDR--PSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSED-GNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~----~dg~v~vwd~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~-~~~~~~ 303 (526)
..++++|+ .++.|.+|.+ .+++.......+...+..++|+|+|++|++++.+ +.|.+|++... +....+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 3567888865 4565433222267778899999999999999886 79999998764 344455
Q ss_pred EecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEe----ecCCC-----CCCCCCeeEEEEccCCcEEE
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQV----SDAGT-----DGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~----~~~~~-----~~~~~~v~~~~~~~~~~~l~ 373 (526)
.....+......+++ +++++++++ .++.+.+|++.....+..+ ...+. ..+...+.+++|+|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 555545667778888 788877776 5789999999754332211 11100 01123468899999998665
Q ss_pred EEe-CCCcEEEEECCCCce------e-------eEecCCCCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcCCCcc--ceE
Q 009763 374 TGT-SEALVKIWDVKSQAN------V-------AKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKN--FRS 435 (526)
Q Consensus 374 ~g~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~--~~~ 435 (526)
+++ .++.|.+|++..... + .........+..++|+|+|+++++++. ++ |.+||+.++.. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 554 578999999875431 1 112234456789999999998888774 45 99999986643 222
Q ss_pred EecC-CCCCCeeEEEEcCCCCEEEEEeC---C-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe-CC
Q 009763 436 FESS-DSETPTNSVDFDHSGSYLAVASA---D-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MD 509 (526)
Q Consensus 436 ~~~~-~~~~~i~~i~~s~~~~~l~~~~~---d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d 509 (526)
+... .+...+..++|+|+|++|++++. + +.+|+++........+..+.. ...+.+++|+|||++|++++ .+
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTT
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCC
Confidence 3221 11345679999999999876543 3 999998643344445544433 34678899999999998887 67
Q ss_pred CcEEEeeCC
Q 009763 510 RNLRVFGLP 518 (526)
Q Consensus 510 g~v~iw~l~ 518 (526)
+.|.+|+++
T Consensus 328 ~~v~v~~~d 336 (361)
T 3scy_A 328 NVIQIFERD 336 (361)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEE
Confidence 899997665
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=3e-21 Score=216.11 Aligned_cols=274 Identities=15% Similarity=0.121 Sum_probs=215.1
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
..|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..|. .+..++|+|+|+.|+.+. ++.|.+|++...
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~- 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE- 275 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-
Confidence 578889999999987 6777888889999997653 44455666565 467889999999888874 899999998442
Q ss_pred ceeeeEeccc-----------CccceEEEEEe-cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC-CeeEEEE
Q 009763 299 NYDCKHTLKD-----------HTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAF 365 (526)
Q Consensus 299 ~~~~~~~~~~-----------h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 365 (526)
.+..+.+ |...+.+++|+ |+|+++++++ ++.+.+|++..+.... +. .+.. .+..+.|
T Consensus 276 ---~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~~ 345 (1045)
T 1k32_A 276 ---KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-----EPLRIRYVRRGG 345 (1045)
T ss_dssp ---CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----CCSCEEEEEECS
T ss_pred ---EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----CCCcceEEeeeE
Confidence 2234443 44578999999 9999999888 7899999998876543 22 3344 7889999
Q ss_pred ccCCcEEEEEeCCCcEE-EEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCC
Q 009763 366 HPDGLILGTGTSEALVK-IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 366 ~~~~~~l~~g~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
+ ||..|+.++.++.+. +||+.+++.. .+.++...+..++|+|+|++|++++.++ |++||+.+++.......+ ..
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~--~~ 421 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR--EA 421 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SS
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC--CC
Confidence 9 999999988888888 9999877654 3446778899999999999999999987 999999998876666444 56
Q ss_pred CeeEEEEcCCCCEEEEEeC------------CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 009763 444 PTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 511 (526)
.+..++|+|+|++|++++. .+.+|++. ... ...+..+ ...+.+++|+|||++|++++.++.
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~g~-~~~l~~~--~~~~~~~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME----GRK-IFAATTE--NSHDYAPAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT----TTE-EEECSCS--SSBEEEEEECTTSCEEEEEESCCC
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC----CCc-EEEeeCC--CcccCCceEcCCCCEEEEEecccC
Confidence 7889999999999988754 27788763 233 3444443 567888999999999999999888
Q ss_pred EEEeeCC
Q 009763 512 LRVFGLP 518 (526)
Q Consensus 512 v~iw~l~ 518 (526)
..+|+..
T Consensus 495 ~~~~~~~ 501 (1045)
T 1k32_A 495 DPSPDRV 501 (1045)
T ss_dssp CCEECSS
T ss_pred CcCcchh
Confidence 8888754
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=1.7e-20 Score=181.93 Aligned_cols=240 Identities=9% Similarity=0.079 Sum_probs=175.3
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcE-EEEecccccceeEEEEecCCCEEEEEeCCC---cEEEEeCCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSADK---TVRVWQGSED 297 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~-dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~ 297 (526)
...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++ .|.+||+.++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 3455 9999999996666655 88999999999887 777777777666699999999988555553 8999999876
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEE-ECCCe-EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE-
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNT-WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT- 374 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 374 (526)
+.+..+.. .....+++|+|+|++++++ ..++. +.+|++.....+...... ..........++|+|+|+++++
T Consensus 119 ---~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 119 ---KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp ---EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEE
T ss_pred ---CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEE
Confidence 45555543 3457899999999855544 55688 999998864433211100 0012245789999999985554
Q ss_pred EeCCCcEEEEECCCCce---eeEecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCcc--ceEEecC--CCC---
Q 009763 375 GTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN--FRSFESS--DSE--- 442 (526)
Q Consensus 375 g~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~--~~~~~~~--~~~--- 442 (526)
+..++.|.+||+.+++. +..+..+ ..+..++|+|+|++|++++.+ + |.+||+.+++. +..+... ...
T Consensus 194 ~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 194 NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence 45688999999999887 7777643 567899999999988777654 4 99999998776 3333322 001
Q ss_pred CCeeEEEEcCCCCEEEEEeCC---eEEEEE
Q 009763 443 TPTNSVDFDHSGSYLAVASAD---IRVYQV 469 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 469 (526)
.....++|+|+|++|++++.+ +.+|++
T Consensus 273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 273 FGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp TTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 123568999999999877765 889997
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=1.5e-21 Score=205.01 Aligned_cols=267 Identities=13% Similarity=0.058 Sum_probs=194.1
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcEEEEecccc-cceeEEEEecCCCEEEEEeC---CCcEEEEeCCC-
Q 009763 223 KPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSE- 296 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~-dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~- 296 (526)
..+|++++|+|||+.||+++. ||++.||++.+++. ..+..|. ..+.++.|+|| +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 346999999999999999887 99999999865554 4455555 68999999999 77777775 45566765543
Q ss_pred -CCceeeeEecccCccceEEEEEecCCCE-EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE
Q 009763 297 -DGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (526)
Q Consensus 297 -~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 374 (526)
.+... .+..+ ..+...+|+|+++. +++++.++.+.+||+.+++........ . .+++|+|||++|++
T Consensus 99 ~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~--~~~~~spDG~~la~ 166 (582)
T 3o4h_A 99 RPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP------G--FGFVSDIRGDLIAG 166 (582)
T ss_dssp STTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES------S--CEEEEEEETTEEEE
T ss_pred CCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC------C--ceEEECCCCCEEEE
Confidence 32212 22222 23446688888853 344444555569999998765554321 1 78999999999998
Q ss_pred EeCC----CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc---EEEEEcCCCccceEEecCCCCCCeeE
Q 009763 375 GTSE----ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 375 g~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
++.+ +.|++||+.+++.. .+..+.+.+..++|+|||++|+++..++ |++||+.+++.. .+..+ ...+..
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 8776 78999999888754 6677888899999999999999777665 999999988766 33332 445555
Q ss_pred EE--------EcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCC---cEEE
Q 009763 448 VD--------FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR---NLRV 514 (526)
Q Consensus 448 i~--------~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~v~i 514 (526)
+. |+|+|.++++++.+ +++|.+ ..... . ..+.+.+++|+ +++++++++.+. .|.+
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~------g~~~~---~--~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID------GERVE---A--PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET------TEEEC---C--CSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE------CCeec---c--CCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence 66 99999888888777 888886 22222 1 14578899999 999999888774 4667
Q ss_pred eeCCC
Q 009763 515 FGLPG 519 (526)
Q Consensus 515 w~l~~ 519 (526)
|+..+
T Consensus 311 ~d~~~ 315 (582)
T 3o4h_A 311 LPSGE 315 (582)
T ss_dssp ETTCC
T ss_pred EcCCC
Confidence 76643
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=5.9e-21 Score=186.38 Aligned_cols=274 Identities=11% Similarity=0.017 Sum_probs=189.1
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccc-cceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
.+++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|+++++ +++..++.|.+||+.++ +....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEEEE
Confidence 45677888899999999999999999999888877543 257899999999865 45557899999999875 44444
Q ss_pred ccc-C-----ccceEEEEEecCCCEEEEEECC------------CeEEEEeCCCCeEE---EEeecCCCCCCCCCeeEEE
Q 009763 306 LKD-H-----TAEVQAVTVHATNKYFVTASLD------------NTWCFYDLSSGICL---TQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 306 ~~~-h-----~~~v~~l~~~p~~~~l~s~s~d------------g~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~ 364 (526)
+.. + ...+..++|+|+|+++++++.+ +.|.+||+.+++.. .... +...+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~ 154 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP------MPRQVYLMR 154 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE------CCSSCCCEE
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc------CCCccccee
Confidence 432 2 2347889999999999998865 89999999885432 2222 223588899
Q ss_pred EccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCC------------------------CeEEEEECCCCCEEEEEeCC
Q 009763 365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG------------------------AVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 365 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~l~~s~~~~~l~~~~~d 420 (526)
|+|+|+ +++++ +.|.+||+.+++.+..+..+.. ....+++++++.........
T Consensus 155 ~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 55553 4499999999988777653320 23456666554221111111
Q ss_pred --cEEEEEcCCCccceEEecCCCCCCeeEEEEcC-CCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 421 --GVKLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 421 --~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
.+..+|..+++. ..+........+..++|+| +|++++++...+.+|++ .....+..+.. ...+.+++|+
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s 303 (349)
T 1jmx_B 232 LYGYLSVDLKTGKT-HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL----KQRKLIKAANL---DHTYYCVAFD 303 (349)
T ss_dssp EEEEEEEETTTCCE-EEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEET----TTTEEEEEEEC---SSCCCEEEEC
T ss_pred ceeEEEEeccCCcE-EecccccCCCcceeeEecCCCCCEEEEEcCeEEEEEC----ccCeEEEEEcC---CCCccceEEC
Confidence 133345544432 1111111245788999999 99999998333999987 34455555443 3356789999
Q ss_pred CCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 498 PDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 498 ~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
|++++|++++.++.|++||+.+.+
T Consensus 304 ~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 304 KKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SSSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCCEEEEecCCCeEEEEeccccc
Confidence 999999988889999999997653
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=3.7e-21 Score=206.75 Aligned_cols=280 Identities=13% Similarity=0.111 Sum_probs=191.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-EEecccc-----------------cceeEEEEecCCCEEEEEeCCC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-TTLSGHS-----------------KKVTSVKFVTEGDLFLTGSADK 287 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~-~~~~~h~-----------------~~V~~l~~~~~~~~l~s~s~dg 287 (526)
+..+.|. ++.+++++.+| | +||+.+++.+ ..+..|. ..|.+++|+|+ ..++.+. |+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4456677 66777777788 8 9999998773 4443333 46999999999 6555554 59
Q ss_pred cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC-----CeEEEEeecCCCC--------
Q 009763 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTD-------- 354 (526)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~-------- 354 (526)
.|++||+.++ +. ..+..+...+.+++|+|+|++|+++ .|+.|++||+.+ ++...........
T Consensus 102 ~i~~~d~~~~---~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 102 GLVGFDMLAR---KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp EEEEEETTTT---EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred EEEEEECCCC---ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 9999999875 33 3334566778899999999999985 679999999998 7655433211000
Q ss_pred -CCCCCeeEEEEccCCcEEEEEe---------------------------------CCCcEEEEECCCCceeeEec--CC
Q 009763 355 -GRPEGYTSAAFHPDGLILGTGT---------------------------------SEALVKIWDVKSQANVAKFD--GH 398 (526)
Q Consensus 355 -~~~~~v~~~~~~~~~~~l~~g~---------------------------------~dg~i~iwd~~~~~~~~~~~--~~ 398 (526)
.+...+.++.|+|||++|++++ .++.|++||+.+++...... .+
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 0011257899999999999987 44679999999887654432 45
Q ss_pred CCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCccceEEecCCCC---CCeeEEEEcC--CCCEEEEEeCC--eE
Q 009763 399 VGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSE---TPTNSVDFDH--SGSYLAVASAD--IR 465 (526)
Q Consensus 399 ~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~---~~i~~i~~s~--~~~~l~~~~~d--i~ 465 (526)
...+.+++|+|+|++|++++.+ .|++||+.+++....+...... ..+..+.|+| +|+++++++.+ ++
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 6679999999999988886543 3999999988443333221111 2346789999 99999888776 89
Q ss_pred EEEEecccCcceeeeeecCCCCCcceEE-EEEcCCCCEEEEEeCC-C----cEEEeeCCCCC
Q 009763 466 VYQVASVKADWNCIKTFPDLSGTGKATC-VKFGPDAKYIAVGSMD-R----NLRVFGLPGND 521 (526)
Q Consensus 466 v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d-g----~v~iw~l~~~~ 521 (526)
||.++.. ......+..+ ...+.. ++|+|+|+.|+.++.+ + .|..|++.++.
T Consensus 337 l~~~~~~---~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 337 LYLYDTT---GRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEEEETT---SCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEEECC---CCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 9998632 2334444443 556766 7999999987765544 4 56666665543
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.2e-20 Score=181.49 Aligned_cols=249 Identities=12% Similarity=0.145 Sum_probs=173.6
Q ss_pred CCCeEEEEecCCCCEEEEEeC--CCcEEEEeCCCCc--EEEEecccccceeEEEEecCCCEEEEEe-CCCcEEEEeCCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGV--DTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSED 297 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~--dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~ 297 (526)
......++|+|+|++++++.. ++.|.+|++.++. .+..+..+...+..++|+|+|++|++++ .++.|.+|++...
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 345678999999994444432 6899999997665 3445556778899999999999888887 6899999999654
Q ss_pred CceeeeEeccc---------CccceEEEEEecCCCEEEEEECCCeEEEEeCC-CCeEEEEeecCCCCCCCCCeeEEEEcc
Q 009763 298 GNYDCKHTLKD---------HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHP 367 (526)
Q Consensus 298 ~~~~~~~~~~~---------h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (526)
+....+..+.. +...+.+++|+|+|+++++...++.|.+||+. ++......... . ........++|+|
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~-~~g~~p~~~~~sp 196 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-M-EAGFGPRHLVFSP 196 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-C-CTTCCEEEEEECT
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-c-CCCCCCceEEECC
Confidence 44344444321 12348899999999966666678899999998 55433221111 1 1123577899999
Q ss_pred CCcEEEE-EeCCCcEEEEECCC--Cce--eeEecCCC------CCeEEEEECCCCCEEEEE-eCCc-EEEEEcCCC---c
Q 009763 368 DGLILGT-GTSEALVKIWDVKS--QAN--VAKFDGHV------GAVTAISFSENGYYLATA-AHDG-VKLWDLRKL---K 431 (526)
Q Consensus 368 ~~~~l~~-g~~dg~i~iwd~~~--~~~--~~~~~~~~------~~i~~l~~s~~~~~l~~~-~~d~-i~iwd~~~~---~ 431 (526)
||+++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++ ..++ |.+||+... .
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9996555 56688999999874 432 22332222 358899999999988554 4455 999999732 3
Q ss_pred cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCc
Q 009763 432 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKAD 475 (526)
Q Consensus 432 ~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~ 475 (526)
.+..+..+ ...+..++|+|+|++|++++.+ +.+|.++.....
T Consensus 277 ~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 277 LIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp EEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 33334332 4467899999999999988765 899988654333
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=5.6e-20 Score=179.82 Aligned_cols=230 Identities=15% Similarity=0.173 Sum_probs=184.1
Q ss_pred CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecccccc---------eeEEEEecCCCEEEEEe--CCCcEEEE
Q 009763 225 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKK---------VTSVKFVTEGDLFLTGS--ADKTVRVW 292 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~-t~~~dg~v~vwd~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~l~s~s--~dg~i~iw 292 (526)
.+..++|++++++++ ++..++.|.+||..+++.+..+..+... +.+++|+|+++++++++ .++.|.+|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 467889999999554 4555799999999999998887765432 78899999999877766 47889999
Q ss_pred eCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
|..+. +....+..+...+.+++|+|+++++++++.++.|.+||+.+++....+... ..++...+..++|+|+++.+
T Consensus 170 d~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 170 DGGNI---KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp ETTTT---EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSSCCCEEEEEEETTTTEE
T ss_pred cCCCC---ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCCCcccceEEECCCCCEE
Confidence 99876 566666556666889999999999999999999999999999988777642 12334567889999999877
Q ss_pred EEEeC-CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe-CCc-EEEEEcCCCccceEEecCCCCCCeeEEE
Q 009763 373 GTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 449 (526)
Q Consensus 373 ~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~ 449 (526)
++++. ++.|.+||+.+++.+..+.... ...++|+|+|++++++. .++ |.+||+.+++.+..+... ..+..++
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~ 320 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPNSLA 320 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCCeEE
Confidence 76655 4899999999998887776543 35799999999776666 455 999999999888877653 4689999
Q ss_pred EcCCCCEEEEEeCC
Q 009763 450 FDHSGSYLAVASAD 463 (526)
Q Consensus 450 ~s~~~~~l~~~~~d 463 (526)
|+|+|++|+++..+
T Consensus 321 ~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LSADGKTLYVSVKQ 334 (353)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred EcCCCCEEEEEEcc
Confidence 99999988776543
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=8.4e-21 Score=191.07 Aligned_cols=262 Identities=11% Similarity=0.124 Sum_probs=180.4
Q ss_pred CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC-------Cc-ee-----eeEecccCcc
Q 009763 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-------GN-YD-----CKHTLKDHTA 311 (526)
Q Consensus 245 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~-~~-----~~~~~~~h~~ 311 (526)
+.+++|+.... .....++.+++++++.++++++.|+ +++|+.... .. .. .... ..|..
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKF 93 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSS
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCC
Confidence 46888765321 1344688999999999999999988 888874210 00 00 0011 13567
Q ss_pred ceEEEEEecCCCEEE----EEECCCeEEEEeCCCC--------eEEEEeecCCCCCCCCCeeEEEEccC-CcEEEEEeCC
Q 009763 312 EVQAVTVHATNKYFV----TASLDNTWCFYDLSSG--------ICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSE 378 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~----s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~d 378 (526)
.|.+++|+|++++|+ +++.|+.|++||+.++ +.+..+.. ..+|...|.+++|+|+ +.+|++++.|
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL--LKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC--CCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec--cCCCCCceEEEEECCCCCCEEEEEECC
Confidence 899999999999999 7888999999998754 22222221 2357789999999997 8999999999
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC-----CCCeeEEEEcC
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-----ETPTNSVDFDH 452 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----~~~i~~i~~s~ 452 (526)
|.|++||++++..+....+|...|.+++|+|+|.+|++|+.|+ |++||.+ ++....+..+.. ...+.++.|++
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec
Confidence 9999999999877766777888999999999999999999998 9999998 555555543321 23789999999
Q ss_pred CCCEEEEEe-CC--------eEEEEEecccCc-ceeeeeecCC-----CCCcceEEEEEcCCCCEEEEEeC-CCcEEEee
Q 009763 453 SGSYLAVAS-AD--------IRVYQVASVKAD-WNCIKTFPDL-----SGTGKATCVKFGPDAKYIAVGSM-DRNLRVFG 516 (526)
Q Consensus 453 ~~~~l~~~~-~d--------i~v~~~~~~~~~-~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~ 516 (526)
++.++++.+ .+ +++|++...... ......+... ....+...+.+-++.+++++++. .+.|.++.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 998886543 21 789998653211 1111222111 11222233444466676665543 44566665
Q ss_pred CC
Q 009763 517 LP 518 (526)
Q Consensus 517 l~ 518 (526)
..
T Consensus 331 ~~ 332 (434)
T 2oit_A 331 RQ 332 (434)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.1e-20 Score=203.67 Aligned_cols=274 Identities=11% Similarity=0.088 Sum_probs=189.2
Q ss_pred CeEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCcEEEEec---ccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 009763 225 GIVSLDIHYSKDVIATGGVD---------TNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~d---------g~v~vwd~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 292 (526)
.|.+++|||||++|++++.+ +.+.+||+.+++. ..+. +|...+..++|+|||+.|+.++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 48999999999999999764 7788999998876 3333 45556899999999999999886 799999
Q ss_pred eCCCCCceeeeEecccCccc------------------eEEEEEecCCCEEEEEECCC----------------------
Q 009763 293 QGSEDGNYDCKHTLKDHTAE------------------VQAVTVHATNKYFVTASLDN---------------------- 332 (526)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~------------------v~~l~~~p~~~~l~s~s~dg---------------------- 332 (526)
|+.++ ........+... +.+++|+|+|++|++++.|+
T Consensus 140 ~~~~g---~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (723)
T 1xfd_A 140 AHVGK---QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (723)
T ss_dssp SSSSS---CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred ECCCC---ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence 99875 333333333332 37899999999999987653
Q ss_pred ------------eEEEEeCCCCeEEEEeecCC-CCCCCCCeeEEEEccCCcEEEEEeC----CCcEEEEECCCCceeeEe
Q 009763 333 ------------TWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKF 395 (526)
Q Consensus 333 ------------~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~ 395 (526)
.|.+||+.+++....+.... ...+...+..++|+|||+++++... +..|++||+.+++....+
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred cCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 79999999887544443210 0112456889999999998877643 357999999998876655
Q ss_pred cC-CCCCe----EEEEECCCCCEEEEE--eCCc-------EEEEEc-CCCcc--ceEEecCCCCCCeeE-EEEcCCCCEE
Q 009763 396 DG-HVGAV----TAISFSENGYYLATA--AHDG-------VKLWDL-RKLKN--FRSFESSDSETPTNS-VDFDHSGSYL 457 (526)
Q Consensus 396 ~~-~~~~i----~~l~~s~~~~~l~~~--~~d~-------i~iwd~-~~~~~--~~~~~~~~~~~~i~~-i~~s~~~~~l 457 (526)
.. +...+ ..++|+|+|+.|+.. ..++ |.+||+ ..+.. ...+... ...+.. ++|+|+|++|
T Consensus 297 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKI 374 (723)
T ss_dssp EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEE
T ss_pred EeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEE
Confidence 43 33333 378999999977653 3332 777883 43331 3333321 234444 6999999999
Q ss_pred EEEeCC-----eEEEEEecccCcceeeeeecC-CCCCcceEEEEEcCCCCEEEEEe
Q 009763 458 AVASAD-----IRVYQVASVKADWNCIKTFPD-LSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 458 ~~~~~d-----i~v~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
+..+.+ +++|.++.... .....+.. ..+...+..++|+|||++|+...
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGN--FNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTT--CCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEEcCCCCcceEEEEEeCCCC--CCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 765542 88999864321 11122221 01245678999999999887654
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=3.1e-19 Score=175.53 Aligned_cols=264 Identities=15% Similarity=0.178 Sum_probs=179.6
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC----CcEEEEeCCC--CcE--EEEecccccceeEEEEecCCCEEEEEe-CCCcEEEE
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVD----TNAVLFDRPS--GQI--VTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVW 292 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~d----g~v~vwd~~~--~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iw 292 (526)
+......++|+|+|++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 45567789999999999988875 7999998765 433 3344445566777887 788777766 58899999
Q ss_pred eCCCCCceeeeEe---cc--------cCccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeE------E------EEe
Q 009763 293 QGSEDGNYDCKHT---LK--------DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGIC------L------TQV 348 (526)
Q Consensus 293 d~~~~~~~~~~~~---~~--------~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~------~------~~~ 348 (526)
++...+....... .. .+...+.+++|+|+|+++++++. ++.|.+|++..... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9976443221111 11 12234688999999997766664 88999998875431 1 111
Q ss_pred ecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEEECCCCce--eeEec---CCCCCeEEEEECCCCCEEEEEeCC--
Q 009763 349 SDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQAN--VAKFD---GHVGAVTAISFSENGYYLATAAHD-- 420 (526)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d-- 420 (526)
.. ........++|+|||+++++++ .++.|.+||+.+++. +..+. .+...+..++|+|+|++|+++..+
T Consensus 206 ~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 206 KV----APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EC----CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred ec----CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 11 2234578999999999887776 689999999987643 22232 233457899999999998776655
Q ss_pred c-EEEEEcC--CCc--cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceE
Q 009763 421 G-VKLWDLR--KLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKAT 492 (526)
Q Consensus 421 ~-i~iwd~~--~~~--~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 492 (526)
+ |.+|++. +++ .+..+.. ...+..++|+|+|++|++++.+ +.+|.++........+. .. .+...+.
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~--~~-~~~~~p~ 355 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK--KD-IKVDKPV 355 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS--CC-EECSSEE
T ss_pred CEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc--ee-eeCCCCe
Confidence 4 9999996 333 2333332 3567899999999999998844 99988864333222221 11 1234688
Q ss_pred EEEEc
Q 009763 493 CVKFG 497 (526)
Q Consensus 493 ~~~~s 497 (526)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88885
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=7.6e-21 Score=204.75 Aligned_cols=278 Identities=11% Similarity=0.078 Sum_probs=194.5
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccccc---ceeEEEEecCCCEEEEEeC---------CCcEEEEeCC
Q 009763 228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTEGDLFLTGSA---------DKTVRVWQGS 295 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~---------dg~i~iwd~~ 295 (526)
+++|+|+|.++++ +.||.|++||+.+++....+.+|.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999965555 4699999999999998877776654 4899999999999998876 7899999998
Q ss_pred CCCceeee--EecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC----CCC---------CCe
Q 009763 296 EDGNYDCK--HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD----GRP---------EGY 360 (526)
Q Consensus 296 ~~~~~~~~--~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~---------~~v 360 (526)
++ +.+ ..+ ...+..++|+|+|+.|+++. ++.|++||+.++............ ++. ...
T Consensus 99 ~g---~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 99 NG---EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TT---EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CC---ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 75 321 122 25688999999999999886 789999999988765432111000 111 112
Q ss_pred eEEEEccCCcEEEEEeCCC----------------------------------cEEEEECCCCcee--------eEecCC
Q 009763 361 TSAAFHPDGLILGTGTSEA----------------------------------LVKIWDVKSQANV--------AKFDGH 398 (526)
Q Consensus 361 ~~~~~~~~~~~l~~g~~dg----------------------------------~i~iwd~~~~~~~--------~~~~~~ 398 (526)
.++.|+|||+.|++++.|. .|++||+.+++.. ..+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 5899999999999987552 7889999887643 123457
Q ss_pred CCCeEEEEECCCCCEEEEEeCC----c-EEEEE----cCCCccceEEe--cCCCCCCee-----EEEEcCCCCEEEE--E
Q 009763 399 VGAVTAISFSENGYYLATAAHD----G-VKLWD----LRKLKNFRSFE--SSDSETPTN-----SVDFDHSGSYLAV--A 460 (526)
Q Consensus 399 ~~~i~~l~~s~~~~~l~~~~~d----~-i~iwd----~~~~~~~~~~~--~~~~~~~i~-----~i~~s~~~~~l~~--~ 460 (526)
...+..++|+||++++++.... . |.+|| +.+++....+. ...+...+. .+.|+|+|+.|+. +
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 7789999999998877774422 2 88999 77766544431 011134444 7899999996654 3
Q ss_pred eCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEeeCCC
Q 009763 461 SAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPG 519 (526)
Q Consensus 461 ~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~l~~ 519 (526)
..+ .+||.++..... ...+..+ ...+..+.++ +++.|+..+.+ +.+++|.++.
T Consensus 332 ~~~g~~~l~~~~~~~~~---~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVEN---AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CTTSCEEEEEESSCSTT---CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ccCCceEEEEEECCCCc---eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 333 566666443322 2233322 4457777777 88877776655 8889998764
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=1.8e-19 Score=174.74 Aligned_cols=239 Identities=10% Similarity=0.053 Sum_probs=179.9
Q ss_pred CeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecc-c----ccceeEEEEecCCCEEEEEe------------CC
Q 009763 225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSG-H----SKKVTSVKFVTEGDLFLTGS------------AD 286 (526)
Q Consensus 225 ~I~~~~~s~~~~~l-~t~~~dg~v~vwd~~~~~~~~~~~~-h----~~~V~~l~~~~~~~~l~s~s------------~d 286 (526)
.+.+++|+|+++.+ +++..++.|.+||+.+++.+..+.. + ...+.+++|+|+|++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 36789999999865 5556678999999999988876653 2 23678999999999988886 57
Q ss_pred CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
+.|.+||+.++ +....+.. ...+.+++|+|++++++++ ++.|.+||+.+++....+.... ...+ +.|+
T Consensus 115 ~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~---~~~~---~~~s 182 (337)
T 1pby_B 115 TRVALYDAETL---SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS---WEAE---TYAQ 182 (337)
T ss_dssp CEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT---TTTT---TBCC
T ss_pred ceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc---cCCC---ceeC
Confidence 99999999875 44444443 4567889999999988887 6899999999998877765321 1122 2678
Q ss_pred cCCcEEEEEeCCC------------------------cEEEEECCCCcee-eEecCCCCCeEEEEECCCCCEEEEEeCCc
Q 009763 367 PDGLILGTGTSEA------------------------LVKIWDVKSQANV-AKFDGHVGAVTAISFSENGYYLATAAHDG 421 (526)
Q Consensus 367 ~~~~~l~~g~~dg------------------------~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~~~~~d~ 421 (526)
|++..++..+..+ .|.+||+.+++.. ..+..+...+.+++|+|+|++++++ .+.
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~ 261 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNV 261 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESE
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCe
Confidence 8887665544332 4689999988764 2234455678899999999999988 334
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
|.+||+.+++....+... ..+.+++|+|+|++|++++.+ +.+|++ .....+..+.
T Consensus 262 v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~----~~~~~~~~~~ 318 (337)
T 1pby_B 262 LESFDLEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDA----ETLEKKGQVD 318 (337)
T ss_dssp EEEEETTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEET----TTCCEEEEEE
T ss_pred EEEEECCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEEC----cCCcEEEEEE
Confidence 999999998887777653 467899999999999988766 888887 3344444443
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=1e-18 Score=173.40 Aligned_cols=276 Identities=13% Similarity=0.051 Sum_probs=184.7
Q ss_pred EEecCCCCEEEEEeC-CCc--EEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 229 LDIHYSKDVIATGGV-DTN--AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 229 ~~~s~~~~~l~t~~~-dg~--v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
.+|+|||++|+.++. +|. |.+||+.+++......++...+..+.|+|+|+.|+.++.++.|++||+.++. ....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~---~~~~ 117 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE---ENVV 117 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC---EEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc---ceee
Confidence 789999999998887 663 8888999888877777777766678899999999999999999999998863 3333
Q ss_pred cccCccceEEEE--EecCCCEEEEEE----------------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCee
Q 009763 306 LKDHTAEVQAVT--VHATNKYFVTAS----------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 306 ~~~h~~~v~~l~--~~p~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 361 (526)
+..+...+.... ++|++.+++... .+..|.+||+.+++....... ...+.
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------~~~~~ 191 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE------NQWLG 191 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE------SSCEE
T ss_pred eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC------Ccccc
Confidence 344444444343 488999887432 447899999999876544432 24688
Q ss_pred EEEEcc-CCcEEEEEeCC------CcEEEEECCCCceeeEecCCC--CCeEEEEECCCCCEEEEEeCC----c--EEEEE
Q 009763 362 SAAFHP-DGLILGTGTSE------ALVKIWDVKSQANVAKFDGHV--GAVTAISFSENGYYLATAAHD----G--VKLWD 426 (526)
Q Consensus 362 ~~~~~~-~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~~~d----~--i~iwd 426 (526)
.+.|+| ||..|+....+ ..|.++|...+.. ..+..+. ..+..+.|+|+|+.|+..+.. . |++||
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence 999999 99988877653 3788888765543 3343333 257889999999977554431 2 99999
Q ss_pred cCCCccceEEecCCCC---CCeeEEEEcCCCCEEEEEe---------CC--eEEEEEecccCcceeeeeecCCCC-----
Q 009763 427 LRKLKNFRSFESSDSE---TPTNSVDFDHSGSYLAVAS---------AD--IRVYQVASVKADWNCIKTFPDLSG----- 487 (526)
Q Consensus 427 ~~~~~~~~~~~~~~~~---~~i~~i~~s~~~~~l~~~~---------~d--i~v~~~~~~~~~~~~~~~~~~~~~----- 487 (526)
+.+++........... .....+.|+|+|+.|+... .+ +.+|++.. ... ..+..+..
T Consensus 271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~---~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN--GTQ---HRVARHDTSWKVF 345 (388)
T ss_dssp TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT--TEE---EEEEECCCCCCCB
T ss_pred cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC--Cce---EEeccccCccccc
Confidence 9988753322221100 0012237899999888542 22 66666532 222 22222110
Q ss_pred ----CcceEEEEEcCCCCEEEEEe-CCCcEEEeeCCC
Q 009763 488 ----TGKATCVKFGPDAKYIAVGS-MDRNLRVFGLPG 519 (526)
Q Consensus 488 ----~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~l~~ 519 (526)
...+.+++|+|||+.|+.++ .+|...+|.++-
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 01467889999999887665 477777776643
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.9e-18 Score=170.25 Aligned_cols=277 Identities=11% Similarity=0.078 Sum_probs=180.4
Q ss_pred EEEEEeCC--CcEEEEeC--CCCcEEE--Eec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCC-CCCceeeeEeccc
Q 009763 237 VIATGGVD--TNAVLFDR--PSGQIVT--TLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS-EDGNYDCKHTLKD 308 (526)
Q Consensus 237 ~l~t~~~d--g~v~vwd~--~~~~~~~--~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~ 308 (526)
.+++|+.. +.|.+|++ .+++... ... .....+..++|+|+|++|++++.+ .|.+|++. ++ ..........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeEeec
Confidence 35556543 45777664 4555422 221 233468899999999999998887 99999986 43 2111111111
Q ss_pred CccceEEEEEecCCCE--EEEEE-------------CCCeEEEEeCC-CCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 309 HTAEVQAVTVHATNKY--FVTAS-------------LDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 309 h~~~v~~l~~~p~~~~--l~s~s-------------~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
+ +.+.+++|+|+|++ +++++ .+|.+.+|++. +++....+... ...+...+.+++|+|||+++
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~spdG~~l 159 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECTTSSEE
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECCCCCEE
Confidence 1 23556889999994 44543 68999999997 46544333210 00123568999999999988
Q ss_pred EEEeC-CCcEEEEECC-CCcee--eEec--CCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcC--CCccc---eEEecC
Q 009763 373 GTGTS-EALVKIWDVK-SQANV--AKFD--GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLR--KLKNF---RSFESS 439 (526)
Q Consensus 373 ~~g~~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~--~~~~~---~~~~~~ 439 (526)
++++. ++.|++||+. +++.. ..+. .+...+..++|+|+|++|++++.. + |.+|++. +++.. ..+...
T Consensus 160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 87654 6799999998 66543 3333 235678999999999999888754 4 9999875 44432 122221
Q ss_pred CCC----C-------CeeEEE-EcCCCCEEEEEeC--------CeEEEEEecccCcceeee-eecCCCCCcceEEEEEcC
Q 009763 440 DSE----T-------PTNSVD-FDHSGSYLAVASA--------DIRVYQVASVKADWNCIK-TFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 440 ~~~----~-------~i~~i~-~s~~~~~l~~~~~--------di~v~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~ 498 (526)
... . .+..++ |+|+|++|++++. .+.+|+++.. .....+. ....+ ...+..++|+|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~--~~~~~~~a~sp 316 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTP--TSGGHSNAVSP 316 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECS--SCCTTCCCEEE
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecC--CCCcccceecC
Confidence 111 1 478899 9999999887642 3889998531 1222111 12221 33456789999
Q ss_pred ---CCCEEEEEeCC-CcEEEeeCCCC
Q 009763 499 ---DAKYIAVGSMD-RNLRVFGLPGN 520 (526)
Q Consensus 499 ---~~~~l~s~~~d-g~v~iw~l~~~ 520 (526)
||++|++++.+ +.|.+|+++..
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999864 89999998654
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=193.76 Aligned_cols=286 Identities=10% Similarity=0.068 Sum_probs=192.5
Q ss_pred CeEEEEecCCCCEEEEEeC---------CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 225 GIVSLDIHYSKDVIATGGV---------DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~---------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
.|.+++|||||++|++++. ++.|++||+.+++.+.... ....+.+++|+|||+.|+.+. |+.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4889999999999998876 7899999999887621111 135689999999999999886 7899999998
Q ss_pred CCCceeeeEec-ccCccce-----------------EEEEEecCCCEEEEEECCC-------------------------
Q 009763 296 EDGNYDCKHTL-KDHTAEV-----------------QAVTVHATNKYFVTASLDN------------------------- 332 (526)
Q Consensus 296 ~~~~~~~~~~~-~~h~~~v-----------------~~l~~~p~~~~l~s~s~dg------------------------- 332 (526)
++. ..... .++...| .+++|+|||++|++++.|.
T Consensus 139 ~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 139 GDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp TSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 753 22211 2332222 4899999999999988652
Q ss_pred ---------eEEEEeCCCCeEE--EEeec-CCCCCCCCCeeEEEEccCCcEEEEEeCCC----cEEEEE----CCCCcee
Q 009763 333 ---------TWCFYDLSSGICL--TQVSD-AGTDGRPEGYTSAAFHPDGLILGTGTSEA----LVKIWD----VKSQANV 392 (526)
Q Consensus 333 ---------~i~iwd~~~~~~~--~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~dg----~i~iwd----~~~~~~~ 392 (526)
.|.+||+.+++.. ..+.. ....++...+..++|+||+.++++....+ .|.+|| +.+++..
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999887642 12110 00113556789999999988877754332 488999 8777665
Q ss_pred eEe----cCCCCCeE-----EEEECCCCCEEEE--EeCCc---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEE
Q 009763 393 AKF----DGHVGAVT-----AISFSENGYYLAT--AAHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 393 ~~~----~~~~~~i~-----~l~~s~~~~~l~~--~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 458 (526)
..+ ..+.+.+. .+.|+|+|+.|+. +..++ |.+||+..++ ...+... ...+..+.+. +++.|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLF 371 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEE
Confidence 555 35666666 7899999986554 33444 8888887765 3333322 4457777777 777766
Q ss_pred EEeCC-------eEEEEEecccCc--ceeeee-ecCCCCCcceEEEEEcCCCCEEEEE-eCC--CcEEEeeCCCCC
Q 009763 459 VASAD-------IRVYQVASVKAD--WNCIKT-FPDLSGTGKATCVKFGPDAKYIAVG-SMD--RNLRVFGLPGND 521 (526)
Q Consensus 459 ~~~~d-------i~v~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~-~~d--g~v~iw~l~~~~ 521 (526)
..+.+ .++|.++..... ...+.. +.+ +...+..+.|++++++++.. +.+ ..+.+|++.+++
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~--~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK--ERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTT--TTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCC--CCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 65532 899998652221 122111 111 24567889999999887753 333 468889886553
No 161
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.83 E-value=4.7e-21 Score=132.69 Aligned_cols=56 Identities=46% Similarity=0.814 Sum_probs=53.3
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccccCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTG 56 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 56 (526)
|+|+||++++++||++|.||++|||++|++||+++|+||+||++|+.+|||+++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 68999999999999997799999999999999999999999999999999999753
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=4.1e-18 Score=183.73 Aligned_cols=240 Identities=10% Similarity=0.084 Sum_probs=169.4
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccc-----eeEEEEecCCCEEEEEeCC---------CcEE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----VTSVKFVTEGDLFLTGSAD---------KTVR 290 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~l~s~s~d---------g~i~ 290 (526)
...++.|+|+|.+++++ ||.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999988886 999999999999988888877643 2448899999999998876 5667
Q ss_pred EEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC----CCC---------
Q 009763 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD----GRP--------- 357 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~--------- 357 (526)
+||+.++ + ...+..|...+...+|+|+|+.|+.+. |+.|++||+.++............ ++.
T Consensus 96 ~~d~~~~---~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 96 IYDLNKR---Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEETTTT---E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEECCCC---c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 9999885 3 334667788899999999999998884 689999999988754322111000 000
Q ss_pred CCeeEEEEccCCcEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeeEec
Q 009763 358 EGYTSAAFHPDGLILGTGTSEA------------------------------------LVKIWDVKS---QA--NVAKFD 396 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~~dg------------------------------------~i~iwd~~~---~~--~~~~~~ 396 (526)
.....+.|+|||+.|+.+..|. .|++||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1224589999999998875321 488899988 63 223333
Q ss_pred ------CCCCCeEEEEECCCCCEEEEEeCC----c-EEEEEcCCCc----c--ceEEecCCCCCCe-----eEEEEcCCC
Q 009763 397 ------GHVGAVTAISFSENGYYLATAAHD----G-VKLWDLRKLK----N--FRSFESSDSETPT-----NSVDFDHSG 454 (526)
Q Consensus 397 ------~~~~~i~~l~~s~~~~~l~~~~~d----~-i~iwd~~~~~----~--~~~~~~~~~~~~i-----~~i~~s~~~ 454 (526)
++...+..++|+|||++++..... . |.+||+.+++ + ...+....+...+ ....|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 266779999999999976654321 2 9999999887 2 2222111112333 378899999
Q ss_pred CEEE-EEeCC---eEEEEEec
Q 009763 455 SYLA-VASAD---IRVYQVAS 471 (526)
Q Consensus 455 ~~l~-~~~~d---i~v~~~~~ 471 (526)
+.|+ ..+.. ..||.++.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEET
T ss_pred CEEEEEEEcCCCceEEEEEEC
Confidence 9877 66543 45555443
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.7e-17 Score=163.45 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=168.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CCcEEEEeccc-ccceeEEEEecCCCE--EEEEe-------------CC
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRP-SGQIVTTLSGH-SKKVTSVKFVTEGDL--FLTGS-------------AD 286 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~-~~~~~~~~~~h-~~~V~~l~~~~~~~~--l~s~s-------------~d 286 (526)
..+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 357789999999999988887 99999987 77665433211 123667899999994 44553 68
Q ss_pred CcEEEEeCCCCCcee-eeEecc-cCccceEEEEEecCCCEEEEEEC-CCeEEEEeCC-CCeEEE--EeecCCCCCCCCCe
Q 009763 287 KTVRVWQGSEDGNYD-CKHTLK-DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLS-SGICLT--QVSDAGTDGRPEGY 360 (526)
Q Consensus 287 g~i~iwd~~~~~~~~-~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~-~~~~~~--~~~~~~~~~~~~~v 360 (526)
|.+.+|++...+... .+..+. .+...+.+++|+|+|+++++++. ++.|.+||+. +++... .+. ...+...+
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~~g~~p 195 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD---APDPGDHP 195 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE---CSSTTCCE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe---cCCCCCCC
Confidence 999999997533221 122211 24567999999999998887764 6899999998 676432 222 11123468
Q ss_pred eEEEEccCCcEEEEEeC-CCcEEEEECC--CCcee---eEec---C----CCC------CeEEEE-ECCCCCEEEEEeC-
Q 009763 361 TSAAFHPDGLILGTGTS-EALVKIWDVK--SQANV---AKFD---G----HVG------AVTAIS-FSENGYYLATAAH- 419 (526)
Q Consensus 361 ~~~~~~~~~~~l~~g~~-dg~i~iwd~~--~~~~~---~~~~---~----~~~------~i~~l~-~s~~~~~l~~~~~- 419 (526)
..++|+|||+++++++. ++.|.+|++. +++.. ..+. . +.. .+..++ |+|+|++|++++.
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 89999999998887765 6899999875 45432 1221 1 121 488999 9999998877642
Q ss_pred -C-----cEEEEEcC-CCccceE---EecCCCCCCeeEEEEcC---CCCEEEEEeCC---eEEEEEec
Q 009763 420 -D-----GVKLWDLR-KLKNFRS---FESSDSETPTNSVDFDH---SGSYLAVASAD---IRVYQVAS 471 (526)
Q Consensus 420 -d-----~i~iwd~~-~~~~~~~---~~~~~~~~~i~~i~~s~---~~~~l~~~~~d---i~v~~~~~ 471 (526)
+ .|.+|++. +++.... .... ...+..++|+| +|++|++++.+ +.+|+++.
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 3 59999996 4543321 2222 34567789999 89999998764 89999854
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.5e-18 Score=181.99 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=160.8
Q ss_pred ccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCCCceeeeEecccCc-cceEEEEEecCCCEEEEEEC---CCeEEEEeC
Q 009763 265 SKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASL---DNTWCFYDL 339 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~ 339 (526)
..+|.+++|+|||+.|++++. ||+++||++.++ .. ..+..|. ..+..+.|+|+ +++++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 557999999999999999887 999999998653 33 3344454 68999999999 77777775 455556544
Q ss_pred CC---CeEEEEeecCCCCCCCCCeeEEEEccCCc-EEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEE
Q 009763 340 SS---GICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 415 (526)
Q Consensus 340 ~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 415 (526)
.. +... .+.. .......+|+|+|+ ++++...++.+.+||+.+++.......+ . .+++|+|||++|+
T Consensus 96 ~~~~~g~~~-~l~~------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la 165 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEA------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIA 165 (582)
T ss_dssp ETTSTTCCE-ECTT------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEE
T ss_pred eccCCCccc-cccC------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEE
Confidence 32 2222 3321 12344668888774 3334444555669999888765544433 2 7899999999999
Q ss_pred EEeCC----c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCC
Q 009763 416 TAAHD----G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 488 (526)
Q Consensus 416 ~~~~d----~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~ 488 (526)
+++.+ . |++||+.+++.. .+..+ ...+..++|+|||++|+++..+ ..||.++.... ... .+..+ .
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~-~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--~~~-~~~~~--~ 237 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLR-VFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--SVE-DLELP--S 237 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCE-EECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC--CEE-ECCCS--C
T ss_pred EEEEcCCCCeEEEEEcCCCCCce-EeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCCC--cEE-EccCC--C
Confidence 77765 4 999999887754 44333 5678999999999999976665 25555543322 222 33333 4
Q ss_pred cceEEEE--------EcCCCCEEEEEeCCCcEEEeeC
Q 009763 489 GKATCVK--------FGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 489 ~~v~~~~--------~s~~~~~l~s~~~dg~v~iw~l 517 (526)
..+..++ |+|||.++++++.||.+++|++
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 4455555 9999999999999999999998
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=1.2e-16 Score=154.89 Aligned_cols=244 Identities=13% Similarity=0.161 Sum_probs=183.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCC------------------------CcEEEEeCCCCcEEEEec-ccccceeEEEEecCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVD------------------------TNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEG 277 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~d------------------------g~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~ 277 (526)
-+.+.+++++++|+++++...+ +.|.+||..+++.+..+. ++......++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888777 479999999898877664 455678999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCceeeeEec---------ccCccceEEEEEec-CCCEEEEEE-CCCeEEEEeCCCCeEEE
Q 009763 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTL---------KDHTAEVQAVTVHA-TNKYFVTAS-LDNTWCFYDLSSGICLT 346 (526)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~h~~~v~~l~~~p-~~~~l~s~s-~dg~i~iwd~~~~~~~~ 346 (526)
+++++...++.|++||..... ..+..+ .++......++++| ++.++++.+ .++.|.+|| .++..+.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 988888889999999976531 133333 23445789999999 788888876 689999999 5666666
Q ss_pred EeecCCC-----CCCCCCeeEEEEccC-CcEEEEEeCCCcEEEEECCCCceeeEec--CCCCCeEEEEECCCCCEEEEEe
Q 009763 347 QVSDAGT-----DGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 347 ~~~~~~~-----~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
.+...+. ..+......++++|+ +.++++...++.|++||..+++.+..+. .+...+..++|+| +..+.+.+
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 6542211 112234789999998 7888888888999999998888888774 3556788999999 44333332
Q ss_pred -------CCc-EEEEEcCCCccceEEecC-CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEe
Q 009763 419 -------HDG-VKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (526)
Q Consensus 419 -------~d~-i~iwd~~~~~~~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 470 (526)
.+. |++||+.+++.+..+... .+...+..++++|+|.++++...+ |++|+++
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 233 999999999888777421 224568999999999666666555 7777763
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=3.2e-18 Score=170.06 Aligned_cols=278 Identities=10% Similarity=-0.016 Sum_probs=177.1
Q ss_pred CeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 225 GIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
.+.+++|+|+|++|+..... ..|.+||+.+++......++......+.|+|+|+.|+.++.++.|++||+.++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~--- 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE--- 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC---
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC---
Confidence 36678899999998877543 368888998877654444333333448899999999999999999999998752
Q ss_pred eeEecccCccceEE-------------------EEEecCCCEEEEE-----ECCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 009763 302 CKHTLKDHTAEVQA-------------------VTVHATNKYFVTA-----SLDNTWCFYDLSSGICLTQVSDAGTDGRP 357 (526)
Q Consensus 302 ~~~~~~~h~~~v~~-------------------l~~~p~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 357 (526)
.......+...... +.|+|+++.++.+ ..+..|.+||+.+++...... +.
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~------~~ 187 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ------DT 187 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE------ES
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc------CC
Confidence 22222223222222 3456777665544 356789999999887655442 22
Q ss_pred CCeeEEEEcc-CCcEEEEEeCC------CcEEEEECCCCceeeEecCC-CCCeEEEEECCCCCEEEEEeCC-----c-EE
Q 009763 358 EGYTSAAFHP-DGLILGTGTSE------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHD-----G-VK 423 (526)
Q Consensus 358 ~~v~~~~~~~-~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d-----~-i~ 423 (526)
..+..+.|+| ++..|+..+.+ ..|.+||+..++........ ...+..+.|+|+|++|+..+.+ + |+
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 4688999999 78866665543 36889998765433222211 2357889999999977766433 3 99
Q ss_pred EEEcCCCccceEEecCCCCCCeeEEEEcC-CCCEEEEEeC----------------C--eEEEEEecccCcceeeeeecC
Q 009763 424 LWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASA----------------D--IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~----------------d--i~v~~~~~~~~~~~~~~~~~~ 484 (526)
+||+.+++........ ... +.|+| +|+++++++. + +.+|++.. .....+.....
T Consensus 268 ~~d~~~g~~~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~ 340 (396)
T 3c5m_A 268 KANPETLENEEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA--KSAQKLCKHST 340 (396)
T ss_dssp EECTTTCCEEEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT--TBCCEEEECCC
T ss_pred EEECCCCCeEEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc--CceEEccCCCC
Confidence 9999887654433221 233 89999 9998887541 2 55555432 22222221110
Q ss_pred C------CCCcceEEEEEcCCCCEEEEEeC-CCcEEEeeCC
Q 009763 485 L------SGTGKATCVKFGPDAKYIAVGSM-DRNLRVFGLP 518 (526)
Q Consensus 485 ~------~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~l~ 518 (526)
. .....+..+.|+|||+.|+.++. ++...+|.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 0 00002456789999998887764 5655555543
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=4.2e-16 Score=147.69 Aligned_cols=242 Identities=13% Similarity=0.183 Sum_probs=174.2
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc------cCccceEEEEEe-cCCCEEEEEEC-CCeE
Q 009763 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK------DHTAEVQAVTVH-ATNKYFVTASL-DNTW 334 (526)
Q Consensus 263 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~~-p~~~~l~s~s~-dg~i 334 (526)
++-..+.++++++++.++++...++.|.+||... .....+. +|...+..+++. +++.++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 4556789999999999888888899999999764 2333332 344578999995 56665555533 8999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec--CCCCCeEEEEECCCCC
Q 009763 335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGY 412 (526)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~ 412 (526)
.+|| .+++.+..+.. .+...+..++++++|+++++...++.|.+||.. ++.+..+. .+...+..++++++|+
T Consensus 103 ~~~d-~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp EEEC-TTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred EEEC-CCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence 9999 56666665532 223468899999999988888788999999964 55555553 3445789999999999
Q ss_pred EEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCC
Q 009763 413 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGT 488 (526)
Q Consensus 413 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~ 488 (526)
++++...++ |++||.. ++.+..+........+..++++++|.++++...+ +.+|+. ....+..+..+...
T Consensus 177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-----~g~~~~~~~~~~~~ 250 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-----DGQLISALESKVKH 250 (286)
T ss_dssp EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-----TSCEEEEEEESSCC
T ss_pred EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-----CCCEEEEEcccCCC
Confidence 777766665 9999974 4555555443223568899999999988887654 555552 23344444433223
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 489 GKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 489 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..+.+++++++|+++++ +.|+.|++|++....
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 45789999999987666 679999999987643
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=6.3e-16 Score=146.50 Aligned_cols=238 Identities=13% Similarity=0.202 Sum_probs=177.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec------ccccceeEEEEe-cCCCEEEEEeC-CCcEEEE
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFV-TEGDLFLTGSA-DKTVRVW 292 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~------~h~~~V~~l~~~-~~~~~l~s~s~-dg~i~iw 292 (526)
++-....+++++++++++++...++.|.+||.. ++.+..+. +|...+.++++. +++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 344578999999999988888889999999987 66666654 244678999995 67776666543 7899999
Q ss_pred eCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 293 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 293 d~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
|... ..+..+. .+...+.+++++|+|+++++...++.|.+||.. ++.+..+... .+...+..++++++|++
T Consensus 106 d~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 NQYG----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS---KHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp CTTS----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT---TTCSSEEEEEECSSSEE
T ss_pred CCCC----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC---CccCCcEEEEECCCCCE
Confidence 9433 3344443 344578999999999988887788999999965 5555555321 23346899999999998
Q ss_pred EEEEeCCCcEEEEECCCCceeeEecCC--CCCeEEEEECCCCCEEEEEeCC--cEEEEEcCCCccceEEecCCCCCCeeE
Q 009763 372 LGTGTSEALVKIWDVKSQANVAKFDGH--VGAVTAISFSENGYYLATAAHD--GVKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 372 l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~d--~i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
+++...++.|++||. .++.+..+..+ ...+..++++++|+++++...+ .|.+||. +++.+..+........+..
T Consensus 178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 888888899999997 45556666433 3578999999999988888765 4999995 4666666665433345789
Q ss_pred EEEcCCCCEEEEEeCC-eEEEEE
Q 009763 448 VDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
++++|+|+++++...+ +++|++
T Consensus 256 i~~~~~g~l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 256 VALMDDGSVVLASKDYRLYIYRY 278 (286)
T ss_dssp EEEETTTEEEEEETTTEEEEEEC
T ss_pred EEECCCCcEEEECCCCeEEEEEc
Confidence 9999999877774333 899986
No 169
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=5e-17 Score=158.41 Aligned_cols=238 Identities=11% Similarity=0.050 Sum_probs=163.4
Q ss_pred CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEeccc------ccceeEEEEecCCCEEEEEeCC-----------
Q 009763 225 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGH------SKKVTSVKFVTEGDLFLTGSAD----------- 286 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~-t~~~dg~v~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~s~d----------- 286 (526)
.+..++|+|++++++ ++..++.|.+||+.+++.+..+..+ ...+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 467899999998654 5556899999999999888776632 2347899999999999998865
Q ss_pred -CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC---------
Q 009763 287 -KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR--------- 356 (526)
Q Consensus 287 -g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--------- 356 (526)
+.|.+||+.++.....+..+. +...+.+++|+|+|+ +++++ +.|.+||+.+++....+........
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence 899999997743223333333 334688999999999 55554 3499999999988776643210000
Q ss_pred ------CC----CeeEEEEccCCcE-----------EEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECC-CCCEE
Q 009763 357 ------PE----GYTSAAFHPDGLI-----------LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYL 414 (526)
Q Consensus 357 ------~~----~v~~~~~~~~~~~-----------l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l 414 (526)
.. ....+++++++.. +.....++.+.+|++ ..+...+..++|+| +|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l 270 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQI 270 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEE
Confidence 00 2344566654321 112223344444433 22456788999999 99999
Q ss_pred EEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 415 ~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
+++ .+.|.+||+.+++....+... ..+..++|+|+|++|++++.+ +.+|+. ...+.+..+.
T Consensus 271 ~~~-~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~----~~~~~~~~~~ 333 (349)
T 1jmx_B 271 YGV-LNRLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNP----DTLEKVKNIK 333 (349)
T ss_dssp EEE-ESEEEEEETTTTEEEEEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEET----TTTEEEEEEE
T ss_pred EEE-cCeEEEEECccCeEEEEEcCC---CCccceEECCCCCEEEEecCCCeEEEEec----cccceeeeee
Confidence 988 334999999998887777653 457799999999988887655 888887 3445555543
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.1e-16 Score=156.94 Aligned_cols=256 Identities=12% Similarity=0.111 Sum_probs=181.1
Q ss_pred CCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe----------CCCcEEEEeCCCCCceeeeEeccc----
Q 009763 243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKD---- 308 (526)
Q Consensus 243 ~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~---- 308 (526)
.|+.|.+||..+++.+..+..+..+ .++|+|+++++++++ .++.|.+||..+. +.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~---~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL---TFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC---CEEEEEEECTTB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC---cEEEEEEcCccc
Confidence 3789999999999999888877665 899999999998886 3678999998875 34444332
Q ss_pred --CccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEE-eecCCCCCCCCCeeEEEEccCC-cEEEEEeCCCcEE
Q 009763 309 --HTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVK 382 (526)
Q Consensus 309 --h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~ 382 (526)
+......++++|+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+.||.+.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------~~~~v~~~p~~~~~~~~~~~dg~~~ 176 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------GCWSVIPQPNRPRSFMTICGDGGLL 176 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------TEEEEEECTTSSSEEEEEETTSSEE
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------CcceeEEcCCCCeeEEEECCCCcEE
Confidence 2345678999999999998874 58999999999988777 5421 22335677765 6777888899999
Q ss_pred EEECCC-Cceee------EecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc--ceEEecCC--------CCCC
Q 009763 383 IWDVKS-QANVA------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSD--------SETP 444 (526)
Q Consensus 383 iwd~~~-~~~~~------~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~--------~~~~ 444 (526)
+|++.. ++... .+.....++ .+.+++++..++..+.++ |.++|+..... ...+.... ....
T Consensus 177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 177 TINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 999865 44431 122222222 233456676777667777 99999875432 12221110 0011
Q ss_pred eeEEEEcCCCCEEEEEeC-------------CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 009763 445 TNSVDFDHSGSYLAVASA-------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 511 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~-------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 511 (526)
...++|+|++..++++.. .+.+||. ...+.+..+..+ . +.+++|+|||++|++++. +.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~----~t~~~v~~i~~~--~--p~~ia~spdg~~l~v~n~-~~ 326 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT----KTKQRVARIPGR--D--ALSMTIDQQRNLMLTLDG-GN 326 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET----TTTEEEEEEECT--T--CCEEEEETTTTEEEEECS-SC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC----CCCcEEEEEecC--C--eeEEEECCCCCEEEEeCC-Ce
Confidence 223789999888887643 2667775 556777777664 3 899999999999999887 99
Q ss_pred EEEeeCCCC
Q 009763 512 LRVFGLPGN 520 (526)
Q Consensus 512 v~iw~l~~~ 520 (526)
|.+||..++
T Consensus 327 v~v~D~~t~ 335 (361)
T 2oiz_A 327 VNVYDISQP 335 (361)
T ss_dssp EEEEECSSS
T ss_pred EEEEECCCC
Confidence 999999876
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=2.7e-16 Score=152.49 Aligned_cols=281 Identities=12% Similarity=0.065 Sum_probs=191.6
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
..|.++.|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||..++ ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC---cEE
Confidence 357788899888777777778899999 35666777777778899999999998888888999999998775 222
Q ss_pred EecccCccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC--
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-- 377 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-- 377 (526)
.....+...+.+++++|+|+++++...+ +.|.+||..++.....+... .....+..+.++|+|.++++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL---STAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS---SSCCCEEEEEECTTSCEEEEECCCB
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC---ccCCcccceEECCCCCEEEEecccc
Confidence 2222456789999999999988877666 68999999887654333211 22356899999999988877653
Q ss_pred ----CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe-CCc-EEEEEcCC-CccceEE-----ecCCCCCCe
Q 009763 378 ----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRK-LKNFRSF-----ESSDSETPT 445 (526)
Q Consensus 378 ----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~-~~~~~~~-----~~~~~~~~i 445 (526)
.+.|..||..+++... +......+..++|+|+|.+|+.+. .++ |.+||+.+ +.....+ ........+
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP 235 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred ccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCC
Confidence 3567777765544332 222334578999999998666554 344 99999964 3332211 111111367
Q ss_pred eEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCC----CCcceEEEEEcCCCCEEEEEeCCC------cEE
Q 009763 446 NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS----GTGKATCVKFGPDAKYIAVGSMDR------NLR 513 (526)
Q Consensus 446 ~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg------~v~ 513 (526)
..++++++|.++++...+ +.+|+. ....+..+.... +...+.+++|++|++.|+.++.+| .|.
T Consensus 236 ~~i~~d~~G~l~v~~~~~~~v~~~d~-----~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~ 310 (333)
T 2dg1_A 236 DSCCIDSDDNLYVAMYGQGRVLVFNK-----RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLY 310 (333)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECT-----TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEE
T ss_pred CceEECCCCCEEEEEcCCCEEEEECC-----CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEE
Confidence 889999999988777554 666653 123333333221 112588999999988777666553 455
Q ss_pred EeeCCC
Q 009763 514 VFGLPG 519 (526)
Q Consensus 514 iw~l~~ 519 (526)
.+++..
T Consensus 311 ~~~~~~ 316 (333)
T 2dg1_A 311 TVNGFA 316 (333)
T ss_dssp EEECSS
T ss_pred EEeccc
Confidence 555543
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=3.4e-16 Score=151.66 Aligned_cols=247 Identities=12% Similarity=0.116 Sum_probs=179.7
Q ss_pred ccceeEEEEecCCCEEEEEeCC------------------------CcEEEEeCCCCCceeeeEecc-cCccceEEEEEe
Q 009763 265 SKKVTSVKFVTEGDLFLTGSAD------------------------KTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVH 319 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~d------------------------g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~ 319 (526)
-+.+.+++++++|+++++...+ +.|.+||..++ +....+. ++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEEC
Confidence 4568999999999988888777 47999998765 3333333 445678999999
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCC----CCCCCCeeEEEEcc-CCcEEEEEe-CCCcEEEEECCCCcee
Q 009763 320 ATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGT----DGRPEGYTSAAFHP-DGLILGTGT-SEALVKIWDVKSQANV 392 (526)
Q Consensus 320 p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~g~-~dg~i~iwd~~~~~~~ 392 (526)
|+|+++++...++.|.+||..... .+..+..... ..+......++++| ++.++++.+ .++.|++|| .+++.+
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 999988888889999999986542 3444432111 23345688999999 888888886 689999999 567766
Q ss_pred eEecC----------CCCCeEEEEECCC-CCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 393 AKFDG----------HVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 393 ~~~~~----------~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
..+.. +......++++|+ +.++++...++ |++||..+++.+..+........+..++|+| +..+.+.
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 66632 2234899999998 66666665565 9999999888888886655566788999999 4444433
Q ss_pred eC-------C--eEEEEEecccCcceeeeeecC-CCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 461 SA-------D--IRVYQVASVKADWNCIKTFPD-LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 461 ~~-------d--i~v~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+. + +.+|++ .....+..+.. ..+...+.+++++++|.++++...++.|++|++...
T Consensus 258 g~~~v~~~~~~~v~~~~~----~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNF----SSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCCTTCSCCCCEEEEET----TTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEeccCCCcEEEEEEc----CCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 21 1 667765 33445555431 123567899999999988888888999999998654
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=2.1e-16 Score=168.38 Aligned_cols=287 Identities=9% Similarity=-0.034 Sum_probs=190.7
Q ss_pred cCCCCCeEEEEecCCCCEEEEE--eCCCcEEEEeCCCCcEEEEeccccccee---------EEEEe--cCCCE-EEEEeC
Q 009763 220 KTSKPGIVSLDIHYSKDVIATG--GVDTNAVLFDRPSGQIVTTLSGHSKKVT---------SVKFV--TEGDL-FLTGSA 285 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~--~~dg~v~vwd~~~~~~~~~~~~h~~~V~---------~l~~~--~~~~~-l~s~s~ 285 (526)
..|...+..++|++++-+++.. +.++...||....+.....+..|...+. ...|+ |||+. |+.++.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 3466789999999776666666 5578899998655555677777776666 67676 99998 776654
Q ss_pred -CCcEEEEeCC--C-CCceeeeEeccc-----CccceEEEEEecCCCEEEEEECC----------CeEEEEeCCC-----
Q 009763 286 -DKTVRVWQGS--E-DGNYDCKHTLKD-----HTAEVQAVTVHATNKYFVTASLD----------NTWCFYDLSS----- 341 (526)
Q Consensus 286 -dg~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~l~s~s~d----------g~i~iwd~~~----- 341 (526)
+..|.+|++. + + . ...+.. |...+..++|+|+|+.|++++.+ ..|++||+.+
T Consensus 100 ~~~~l~~~~~~~~g~~---~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGA---V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp TTCCEEEECTTSTTCC---C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred CCCeEEEEcCCCCCCC---C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5667777765 2 2 1 223333 66788999999999999998877 5899999988
Q ss_pred -CeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC--------CcEEEEECC-CC---ceeeEecCCCCCeEEEEEC
Q 009763 342 -GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVK-SQ---ANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~l~~s 408 (526)
+... .+.. .+...+..+.|+|||+.|+.++.+ ..|++||+. ++ +.......+...+..+.|+
T Consensus 176 ~~~~~-~l~~----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 176 RSAVR-ELSD----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp GGGSE-ESSC----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred CCcee-EEEe----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 5433 3220 122467788999999999887754 379999998 56 4443444456789999999
Q ss_pred CCCCEEEEEeCCc---EEEEEcCCCccceEEecCCCC------CCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCccee
Q 009763 409 ENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSE------TPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNC 478 (526)
Q Consensus 409 ~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~------~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~ 478 (526)
|||++++++..++ |.+||+.+++.......+... ..+..++|+|++.++++++.. .+||.++.... .
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~ 327 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG---E 327 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT---E
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC---c
Confidence 9999777777665 666676555543222211100 015678999999998887655 88887754322 2
Q ss_pred eeeecCCCCCcceEEE-EEcCCCCEEEEEeCCCc--EEEeeCCCC
Q 009763 479 IKTFPDLSGTGKATCV-KFGPDAKYIAVGSMDRN--LRVFGLPGN 520 (526)
Q Consensus 479 ~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~--v~iw~l~~~ 520 (526)
+..+..+ ...+..+ +++.+.-++++++.+.. |.+|++.++
T Consensus 328 ~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 328 LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 3444443 4556666 55443334445555544 444555443
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1.4e-16 Score=171.76 Aligned_cols=283 Identities=11% Similarity=0.088 Sum_probs=183.2
Q ss_pred EEEEecCCCCEEEEEeCC---------CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 009763 227 VSLDIHYSKDVIATGGVD---------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~~d---------g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 297 (526)
..+.|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.|+.+. |+.|++|++.++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 458899999999998875 56779999988754 4677788899999999999998885 689999999875
Q ss_pred CceeeeEecccCccce-----------------EEEEEecCCCEEEEEECCC----------------------------
Q 009763 298 GNYDCKHTLKDHTAEV-----------------QAVTVHATNKYFVTASLDN---------------------------- 332 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v-----------------~~l~~~p~~~~l~s~s~dg---------------------------- 332 (526)
.. ...+..++...+ ..+.|+|||++|+.++.|.
T Consensus 143 ~~--~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 143 PS--YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp CC--EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred ce--EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 31 111222333222 3489999999999876332
Q ss_pred --------eEEEEeCCC---Ce--EEEEeecC-CCCCCCCCeeEEEEccCCcEEEEEeC----CCcEEEEECCCCc----
Q 009763 333 --------TWCFYDLSS---GI--CLTQVSDA-GTDGRPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQA---- 390 (526)
Q Consensus 333 --------~i~iwd~~~---~~--~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~---- 390 (526)
.|.+||+.+ +. ....+... ...++...+..++|+|||++++.... +..|.+||+.+++
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 478889888 63 12222210 00024567889999999996665533 2379999998887
Q ss_pred ee--eEe--cCCCCCeE-----EEEECCCCCEEE-EEeC-Cc---EEEEEcCCCccceEEecCCCCCCeeEEE-EcCCCC
Q 009763 391 NV--AKF--DGHVGAVT-----AISFSENGYYLA-TAAH-DG---VKLWDLRKLKNFRSFESSDSETPTNSVD-FDHSGS 455 (526)
Q Consensus 391 ~~--~~~--~~~~~~i~-----~l~~s~~~~~l~-~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~-~s~~~~ 455 (526)
+. ..+ ..+...|. ...|+|||+.|+ ..+. +| |.+||+..+.... +... ...+..+. ++ ++
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g--~~~v~~~~~~d--~~ 375 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG--TWEVIGIEALT--SD 375 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS--SSCEEEEEEEC--SS
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC--CEEEEEEEEEe--CC
Confidence 22 222 34544443 788999999877 5554 33 8999988665432 2222 34455544 44 55
Q ss_pred EE-EEEeC--C----eEEEEEecccCcceeeeeecCC--CCCcceEEEEEcCCCCEEEEEeCC---CcEEEeeCCCC
Q 009763 456 YL-AVASA--D----IRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPDAKYIAVGSMD---RNLRVFGLPGN 520 (526)
Q Consensus 456 ~l-~~~~~--d----i~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d---g~v~iw~l~~~ 520 (526)
.| ++++. + ..||.++....... ..+... .....+..+.|+|++++++..... ..+.+++..++
T Consensus 376 ~i~f~~~~~~~~~~~~~ly~v~~~g~~~~--~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 376 YLYYISNEYKGMPGGRNLYKIQLIDYTKV--TCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEEEEESCGGGCTTCBEEEEEETTEEEEE--EESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EEEEEEecCCCCCceeEEEEEECCCCCcc--eeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 44 44544 2 68887754322111 122210 113567899999999987655433 35777776543
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=9.9e-17 Score=159.01 Aligned_cols=264 Identities=13% Similarity=0.019 Sum_probs=176.2
Q ss_pred EEEeCCCCcEEEEecccccceeE-----EEEecCCCEEEEEeC-CCc--EEEEeCCCCCceeeeEecccCccceEEEEEe
Q 009763 248 VLFDRPSGQIVTTLSGHSKKVTS-----VKFVTEGDLFLTGSA-DKT--VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319 (526)
Q Consensus 248 ~vwd~~~~~~~~~~~~h~~~V~~-----l~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 319 (526)
..++..++..+..+..|...... .+|+|||++|+.++. +|. |.+||+.++ +......++...+..+.|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEEC
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEc
Confidence 34577778888888888766665 889999999888887 674 888888775 4555555666666677899
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE--EEEccCCcEEEEE----------------------
Q 009763 320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS--AAFHPDGLILGTG---------------------- 375 (526)
Q Consensus 320 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~g---------------------- 375 (526)
|+|+.|+.++.++.|++||+.+++........ ...+.. ..+++++.+++..
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVP-----AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECC-----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeech-----hhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 99999999999999999999999876655421 122322 3358899888743
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECC-CCCEEEEEeCC-------cEEEEEcCCCccceEEecCCCCCCeeE
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHD-------GVKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d-------~i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
..++.|.+||+.+++.... ..+...+..+.|+| +|..|+....+ .|.++|+..... ..+........+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTH 242 (388)
T ss_dssp CCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEE
T ss_pred CCcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccccc
Confidence 2346899999998865443 34566789999999 99988876642 288888765543 23322211135778
Q ss_pred EEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCCCCC-cceEEEEEcCCCCEEEEE---------eCCCcE
Q 009763 448 VDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGT-GKATCVKFGPDAKYIAVG---------SMDRNL 512 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~---------~~dg~v 512 (526)
..|+|+|+.|+..+.. ..||.++........+..+..+.+. .....+.|+|||+.|+.. ..+..|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 8999999987664432 2354444333333344443321000 001123799999988754 456789
Q ss_pred EEeeCCCCC
Q 009763 513 RVFGLPGND 521 (526)
Q Consensus 513 ~iw~l~~~~ 521 (526)
++|++.++.
T Consensus 323 ~~~d~~~~~ 331 (388)
T 3pe7_A 323 YVFNMKNGT 331 (388)
T ss_dssp EEEETTTTE
T ss_pred EEEeccCCc
Confidence 999997653
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=6.6e-14 Score=133.00 Aligned_cols=278 Identities=10% Similarity=0.026 Sum_probs=193.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
...+.+++++++|+++++...++.|.+||.. +..... +..+...+.++++.++|.++++...++.|..||... ...
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~ 90 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG--IIK 90 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--cEE
Confidence 4578999999999988877668899999988 654432 233456799999999999888877788999999763 111
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
...+......+.++++.+++.++++...++.|..||. ++........ .....+..+++.++|.++++...++.|
T Consensus 91 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 91 -EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP----NKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS----STTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred -EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC----CCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 2222234567899999999988888777899999998 5544332211 223468899999999888877777899
Q ss_pred EEEECCCCceeeE-ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEE
Q 009763 382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459 (526)
Q Consensus 382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 459 (526)
..||. +++.... +......+.+++++++|.++++...++ |.+||. +++. ..+........+..++++++|.++++
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEECCCCCEEEe
Confidence 99998 6654432 233445688999999998766665555 999998 5553 33433323467899999999986666
Q ss_pred EeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 460 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 460 ~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
...+ +.+|+. .. . +..+....+...+.++++ +++.+.++.+ .+.|..++....
T Consensus 242 ~~~~~~i~~~d~---~g--~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 242 EWGANKIGRLTS---NN--I-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ETTTTEEEEEET---TT--E-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ccCCceEEEECC---CC--c-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5344 666654 11 1 222221122457899999 8888666554 567777776554
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=2.9e-15 Score=146.95 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=182.9
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccc------ccceeEEEEecCCCEEEEEeC--CCcE
Q 009763 228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH------SKKVTSVKFVTEGDLFLTGSA--DKTV 289 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~----------~dg~v~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~s~--dg~i 289 (526)
.++|+|+++++++++ .++.|.+||..+++.+..+... ......++|+|+|++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 899999999998886 2677999999999888877632 345678999999999998864 6899
Q ss_pred EEEeCCCCCceeeeEe-cccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCC-CeEEEEeec-CCCCCCCCCeeEEEE
Q 009763 290 RVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS-GICLTQVSD-AGTDGRPEGYTSAAF 365 (526)
Q Consensus 290 ~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~-~~~~~~~~~-~~~~~~~~~v~~~~~ 365 (526)
.+||+.+. +.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. ++....... ........+ ..+.+
T Consensus 134 ~v~d~~~~---~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 207 (361)
T 2oiz_A 134 GIVDVAKG---DYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAP 207 (361)
T ss_dssp EEEETTTT---EEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCC
T ss_pred EEEECCCC---cEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEe
Confidence 99999886 55555 432 2 22335667765 6788899999999999865 544422210 000011111 23334
Q ss_pred ccCCcEEEEEeCCCcEEEEECCCCce--eeEecCC----------CCCeEEEEECCCCCEEEEEeC-----------Cc-
Q 009763 366 HPDGLILGTGTSEALVKIWDVKSQAN--VAKFDGH----------VGAVTAISFSENGYYLATAAH-----------DG- 421 (526)
Q Consensus 366 ~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~-----------d~- 421 (526)
.+++..++..+.++.|.++|+..... ...+... ......++|+|++..++++.. ..
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 67777777777889999999875532 1222100 011223789999887777643 23
Q ss_pred EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcc--eeeeeecCCCCCcceEEEEEcC
Q 009763 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADW--NCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
|.+||+.+++.+..+..+ . +..++|+|+|++|++++.+ +.||+. .++ +.+..+... ......++++|
T Consensus 288 v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~~~v~v~D~----~t~~l~~~~~i~~~--G~~P~~~~~~p 357 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDGGNVNVYDI----SQPEPKLLRTIEGA--AEASLQVQFHP 357 (361)
T ss_dssp EEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECSSCEEEEEC----SSSSCEEEEEETTS--CSSEEEEEECC
T ss_pred EEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCCCeEEEEEC----CCCcceeeEEeccC--CCCcEEEEecC
Confidence 999999999999988875 3 8999999999999988766 999987 556 777776443 55678899999
Q ss_pred CCC
Q 009763 499 DAK 501 (526)
Q Consensus 499 ~~~ 501 (526)
+|+
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 986
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=2.3e-15 Score=146.80 Aligned_cols=254 Identities=10% Similarity=0.109 Sum_probs=169.5
Q ss_pred CeEEEEecCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC---C--cEE
Q 009763 225 GIVSLDIHYSKDVIATGG---------VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---K--TVR 290 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~---------~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g--~i~ 290 (526)
.+....+ +|+.++... .++.|.+||+.+++... + ..+..+.|+|||+.|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4667777 888777642 26679999998876543 3 568899999999998887754 3 377
Q ss_pred EEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC---------------------------CeEEEEeCCCCe
Q 009763 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---------------------------NTWCFYDLSSGI 343 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---------------------------g~i~iwd~~~~~ 343 (526)
+|++.++ +...... +.. +..+.|+|+|+.|+.++.+ ..|.+||+.+++
T Consensus 89 ~~~~~~g---~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 89 VADLETL---SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEETTTT---EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred EEECCCC---ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 7888764 3333222 334 9999999999988887642 579999999988
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC-------cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEE
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT 416 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 416 (526)
.+..+.. . .+..+.|+||| +++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|++|+.
T Consensus 164 ~~~~l~~------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 164 VIEEFEK------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp EEEEEEE------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEE
T ss_pred EEeeecC------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEE
Confidence 7455542 1 57789999999 777776542 334444434443 334334 455544 899998877
Q ss_pred EeCC--------c-EEEEEcCCCccceEEecCCCCCCeeE-EEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecC
Q 009763 417 AAHD--------G-VKLWDLRKLKNFRSFESSDSETPTNS-VDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 417 ~~~d--------~-i~iwd~~~~~~~~~~~~~~~~~~i~~-i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~ 484 (526)
++.+ . |.+|| +++.. .+. ..+...+.. +.|+ ++ ++++++.+ .+|| ++ . . ...... .
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~-~l~-~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~-g--~~~~~~-~ 299 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVM-GIL-DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-D-G--EIKPIA-K 299 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEE-ESS-TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-S-S--SEEEEE-C
T ss_pred EEccccCCccccceEEEEC--CCceE-ecc-ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-C-C--ceEEEe-c
Confidence 6632 2 77888 44332 221 122456775 8999 88 77777766 8999 86 2 2 222222 2
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCcE-EEeeCC
Q 009763 485 LSGTGKATCVKFGPDAKYIAVGSMDRNL-RVFGLP 518 (526)
Q Consensus 485 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v-~iw~l~ 518 (526)
+ .+.|.+++|++ .++++++.++.. .+|.++
T Consensus 300 ~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 300 G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 2 56789999999 677777777765 777665
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=5.4e-15 Score=139.06 Aligned_cols=250 Identities=11% Similarity=0.087 Sum_probs=190.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccc-cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccC-cc
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TA 311 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~ 311 (526)
.+++|++++.++.|.+||..+|+.+..+..+. ..+.++.++|+|++|+ +.++.|..||. ++ +.+..+..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G---~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG---RELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS---CEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC---CEEEEEcCCCCc
Confidence 46789999999999999999999999998776 4789999999999888 45788999998 54 455555543 34
Q ss_pred ceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCC-CCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCC
Q 009763 312 EVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGT-DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 389 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 389 (526)
.+.++.+.++|+++++.+. ++.+..+|. +++.+..+..... ..+......+.+.++|+++++...++.|..||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 888888886 6777766653211 1122345566789999999999999999999998 9
Q ss_pred ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC----CCCeeEEEEcCCCCEEEEEeC--
Q 009763 390 ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASA-- 462 (526)
Q Consensus 390 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----~~~i~~i~~s~~~~~l~~~~~-- 462 (526)
+.+.++... ..+.++.+.++|..++++..++ |..||..+++.+..+..... ...+..+...++|.++++...
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~ 234 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH 234 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence 999888754 4566788899999999888887 99999999999888864321 123778889999999988742
Q ss_pred --------CeEEEEEecccCcceeeeeecCCCCCcceEEEE
Q 009763 463 --------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVK 495 (526)
Q Consensus 463 --------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (526)
+.+++.++ .+.+.+-.+.....-+.+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~---~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 235 DREAGKGKHPQLVEID---SEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CTTGGGSCCCSEEEEC---TTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccCCceEEEEC---CCCCEEEEecCcccccceeeee
Confidence 35677773 3445555565554445555543
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=5.7e-15 Score=140.66 Aligned_cols=232 Identities=11% Similarity=0.095 Sum_probs=169.2
Q ss_pred CCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++|+++++...++.|.+||..++.. .
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-~ 103 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-E 103 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-E
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-E
Confidence 44678999999998 7888888999999999877 566666778899999999999888777778999999866421 1
Q ss_pred eeE-eccc-CccceEEEEEecCCCEEEEEE-----------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE
Q 009763 302 CKH-TLKD-HTAEVQAVTVHATNKYFVTAS-----------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (526)
Q Consensus 302 ~~~-~~~~-h~~~v~~l~~~p~~~~l~s~s-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (526)
.+. ...+ ....+..++++|+|+++++.+ ..+.|..++.. +... .+. .+......
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-----~~~~~~~g 176 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-----RDRVKPNG 176 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-----CCCSSEEE
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-----cCCCCCcc
Confidence 111 1111 123567899999999888732 13466666665 4433 222 22345789
Q ss_pred EEEccCCcEEEEEeCCCcEEEEECC-CCce---eeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEec
Q 009763 363 AAFHPDGLILGTGTSEALVKIWDVK-SQAN---VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES 438 (526)
Q Consensus 363 ~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~ 438 (526)
++|+|+++++++.+.++.|.+||+. +++. ...+..+...+.+++++++|+++++. .++|.+||.. ++.+..+..
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEEC
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEEC
Confidence 9999999988777778999999987 4443 23333345567889999999877666 4459999986 666677765
Q ss_pred CCCCCCeeEEEE-cCCCCEEEEEeCCeEEEEEe
Q 009763 439 SDSETPTNSVDF-DHSGSYLAVASADIRVYQVA 470 (526)
Q Consensus 439 ~~~~~~i~~i~~-s~~~~~l~~~~~di~v~~~~ 470 (526)
+ .. +.+++| +|+++.|++++.+ .+|.++
T Consensus 255 ~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~ 283 (296)
T 3e5z_A 255 P--QT-TSNLCFGGPEGRTLYMTVST-EFWSIE 283 (296)
T ss_dssp S--SC-CCEEEEESTTSCEEEEEETT-EEEEEE
T ss_pred C--CC-ceeEEEECCCCCEEEEEcCC-eEEEEE
Confidence 4 33 889999 5899999988877 566553
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=1.1e-14 Score=140.91 Aligned_cols=264 Identities=8% Similarity=-0.015 Sum_probs=182.8
Q ss_pred CCCcEEEEeCCCCcEEEEec------ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEE
Q 009763 243 VDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV 316 (526)
Q Consensus 243 ~dg~v~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 316 (526)
.++.|.+||..+++....+. ........+.+. ++.++++...++.|.+||..+. +.+..+. .......+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---~~~~~i~-~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---KEVGRIT-GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---CEEEEEE-CCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc---EEEEEcC-CCCCCcEE
Confidence 37899999999988766442 112345677774 4556666667899999999886 4555553 34668899
Q ss_pred EEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEEECCCCceeeEe
Q 009763 317 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQANVAKF 395 (526)
Q Consensus 317 ~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~ 395 (526)
++++++..+++...++.|.+||..+++....+......+.......+++ .++.++++.. .++.|.+||+.+++.+..+
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 9988885444444899999999999988877753321111124456666 4455555544 4889999999999888777
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCC----------c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCe
Q 009763 396 DGHVGAVTAISFSENGYYLATAAHD----------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADI 464 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~l~~~~~d----------~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di 464 (526)
... .....+.++|+|++++++..+ + |.+||..+++....+.... ...+..++|+|++++|+++...+
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~~v 246 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINNDI 246 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESSSE
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEccEE
Confidence 643 345789999999987776654 4 9999999888777766432 23688999999999999887766
Q ss_pred EEEEEecccCcceeeeeecCCCCCcceEEEEEcCC-CCEEEEE----eCCCcEEEeeCC
Q 009763 465 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVG----SMDRNLRVFGLP 518 (526)
Q Consensus 465 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~----~~dg~v~iw~l~ 518 (526)
.+|+..... ......+.. .......++++|+ +.+.++. ..++.|.+|+..
T Consensus 247 ~~~d~~t~~--~~~~~~~~~--~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 247 WRMPVEADR--VPVRPFLEF--RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEETTCSS--CCSSCSBCC--CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEECCCCc--eeeeeeecC--CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 666653221 111111111 1356889999994 5555554 568999999987
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=6.4e-15 Score=140.34 Aligned_cols=245 Identities=11% Similarity=0.089 Sum_probs=169.9
Q ss_pred cEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeE
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 334 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i 334 (526)
..+..+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 33444545566688999999998 7888888999999998763 33444566789999999999988777777999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE----Ee-------------CCCcEEEEECCCCceeeEecC
Q 009763 335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GT-------------SEALVKIWDVKSQANVAKFDG 397 (526)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----g~-------------~dg~i~iwd~~~~~~~~~~~~ 397 (526)
.+||..+++........ .......+..++++|+|+++++ |+ ..+.|..+|.. ++ ...+..
T Consensus 93 ~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~ 169 (296)
T 3e5z_A 93 ERQREPGGEWESIADSF-EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR 169 (296)
T ss_dssp EEECSTTCCEEEEECEE-TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred EEEcCCCCcEEEEeecc-CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence 99999888754433211 1111235678999999998887 33 13456666654 43 334445
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCc-EEEEEcC-CCcc---ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEec
Q 009763 398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLR-KLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS 471 (526)
Q Consensus 398 ~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~-~~~~---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~ 471 (526)
+......++|+|+|+.|++.+.++ |.+||+. .+.. ...+ ......+..++++++|.++++. .. +.+|+.
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~-- 244 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTP-- 244 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECT--
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc-CCeEEEECC--
Confidence 566789999999999986655555 9999997 4443 2333 2224556789999999977777 33 777774
Q ss_pred ccCcceeeeeecCCCCCcceEEEEE-cCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 472 VKADWNCIKTFPDLSGTGKATCVKF-GPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
....+..+..+ .. +++++| +++++.|++++.+| +.-++....
T Consensus 245 ---~g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 245 ---DGDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp ---TSCEEEEEECS--SC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred ---CCCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 24445555543 34 889999 58999999988764 444455443
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=1.2e-15 Score=162.57 Aligned_cols=235 Identities=12% Similarity=0.048 Sum_probs=159.8
Q ss_pred EEEec--CCCCE-EEEEeC-CCcEEEEeCC--C-CcEEEEecc-----cccceeEEEEecCCCEEEEEeCC---------
Q 009763 228 SLDIH--YSKDV-IATGGV-DTNAVLFDRP--S-GQIVTTLSG-----HSKKVTSVKFVTEGDLFLTGSAD--------- 286 (526)
Q Consensus 228 ~~~~s--~~~~~-l~t~~~-dg~v~vwd~~--~-~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~d--------- 286 (526)
...|+ |||+. |+.++. +..|.+|++. . +. ...+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 34444 99998 776654 5677777775 2 33 445555 67788999999999999998877
Q ss_pred -CcEEEEeCCCC-----CceeeeEecc-cCccceEEEEEecCCCEEEEEECC--------CeEEEEeCC-CCe--EEEEe
Q 009763 287 -KTVRVWQGSED-----GNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLS-SGI--CLTQV 348 (526)
Q Consensus 287 -g~i~iwd~~~~-----~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~d--------g~i~iwd~~-~~~--~~~~~ 348 (526)
..|++||+.+. + .. ..+. .+...+..++|+|+|++|+.++.+ ..|.+||+. ++. ....+
T Consensus 160 ~~~i~~~~~~~~~~~~~~--~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRS--AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEEEEEEETTSTTTTCGG--GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred eeEEEEEECCCCccccCC--ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 58999998772 1 22 2334 455678889999999999988755 379999999 561 23333
Q ss_pred ecCCCCCCCCCeeEEEEccCCcEEEEEeCCC--cEEEEECCCCceeeEecCCCCC--------eEEEEECCCCCEEEEEe
Q 009763 349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEA--LVKIWDVKSQANVAKFDGHVGA--------VTAISFSENGYYLATAA 418 (526)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~~~~~l~~~~ 418 (526)
.. .+...+..+.|+|||++++++..++ .|.+||+.+++.......+... +..++|++++.++++++
T Consensus 237 ~~----~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 237 LG----GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp EE----ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred CC----CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence 21 2345789999999999888888888 6666776666554333322221 56789999999999998
Q ss_pred CCc-EEEE--EcCCCccceEEecCCCCCCeeEE-EEcCCCCEEEEEeCC--eEEEEEecccC
Q 009763 419 HDG-VKLW--DLRKLKNFRSFESSDSETPTNSV-DFDHSGSYLAVASAD--IRVYQVASVKA 474 (526)
Q Consensus 419 ~d~-i~iw--d~~~~~~~~~~~~~~~~~~i~~i-~~s~~~~~l~~~~~d--i~v~~~~~~~~ 474 (526)
. + ++|| |+..++ ...+..+ ...+..+ .++.+.-++++++.+ ..+|.++....
T Consensus 313 ~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 313 K-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp S-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred c-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 8 7 7777 655544 4444433 4456666 555444444445555 77887764333
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=8.9e-15 Score=156.98 Aligned_cols=242 Identities=10% Similarity=0.082 Sum_probs=169.9
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCc-------
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDT-----NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT------- 288 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg-----~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~------- 288 (526)
.|...+..++|||||++||.+..++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3444688999999999998776543 8999999998876643322 23778999999999999888766
Q ss_pred ---------EEEEeCCCCCce-eeeEecccCccceEEEEEecCCCEEEEEEC-----CCeEEEEeCCC------Ce-EEE
Q 009763 289 ---------VRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSS------GI-CLT 346 (526)
Q Consensus 289 ---------i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~------~~-~~~ 346 (526)
|++|++.++... ..+.....|...+..+.|+|+|++|+.++. +..|.+||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999775321 123333345666889999999999888765 57899999986 42 234
Q ss_pred EeecCCCCCCCCCeeEEEEccCCcEEEEEeCC----CcEEEEECCCCc--eeeEecCCCC--CeEEEEECCCCCEEEEEe
Q 009763 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQA--NVAKFDGHVG--AVTAISFSENGYYLATAA 418 (526)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~~--~~~~~~~~~~--~i~~l~~s~~~~~l~~~~ 418 (526)
.+.. +...+.. .|+++|..|+..+.. +.|.+||+.++. ....+..+.. .+..+.|++++.++++..
T Consensus 281 ~l~~-----~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 281 KLID-----NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp EEEC-----SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred EeeC-----CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 4432 1223333 588888877766543 369999998764 2344444433 688899998888888888
Q ss_pred CCc---EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEEec
Q 009763 419 HDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVAS 471 (526)
Q Consensus 419 ~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~~ 471 (526)
.++ |.+||+.+++....+..+ ...+..+.++|++..++....+ ..+|.++.
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred ECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 775 778888777766666654 5678889999999766654322 55555544
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=5.2e-14 Score=136.31 Aligned_cols=241 Identities=11% Similarity=0.111 Sum_probs=170.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC----CcEEEEeCCCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSED 297 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~ 297 (526)
+...+.+++|++++++++++..++.|.+||..+++.......+...+.+++|+++|+++++...+ +.|.+||..+.
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 44567899999999988888889999999998887765554566789999999999988877766 68999998775
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
.. .....-..+...+.++.++|+|+++++... .+.|..||..+++....... ...+..++|+|+++.
T Consensus 123 ~~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------ISVANGIALSTDEKV 195 (333)
T ss_dssp SC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------ESSEEEEEECTTSSE
T ss_pred EE-EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC------CCcccceEECCCCCE
Confidence 21 111111134567999999999988776654 35677777766544332221 134788999999985
Q ss_pred EE-EEeCCCcEEEEECCC-CceeeE--------ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC
Q 009763 372 LG-TGTSEALVKIWDVKS-QANVAK--------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD 440 (526)
Q Consensus 372 l~-~g~~dg~i~iwd~~~-~~~~~~--------~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 440 (526)
++ +...++.|.+||+.+ +..... +.++ ..+..++++++|+++++...++ |.+||. +++.+..+....
T Consensus 196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~ 273 (333)
T 2dg1_A 196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG 273 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC
Confidence 54 445678999999964 332221 1222 4678899999999877776665 999998 466666665431
Q ss_pred C----CCCeeEEEEcCCCCEEEEEeCC------eEEEEEec
Q 009763 441 S----ETPTNSVDFDHSGSYLAVASAD------IRVYQVAS 471 (526)
Q Consensus 441 ~----~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~ 471 (526)
. ...+.+++|+|++..|++++.+ ..||.++.
T Consensus 274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 274 RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 1 1158899999998777665543 57887754
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=1.7e-14 Score=154.84 Aligned_cols=277 Identities=10% Similarity=0.015 Sum_probs=182.9
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCcEEEEec------ccccceeEEEEecCCCEEEEEeCCC-----cEEEEeCCC
Q 009763 233 YSKDVIATGGVD-----TNAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLTGSADK-----TVRVWQGSE 296 (526)
Q Consensus 233 ~~~~~l~t~~~d-----g~v~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~ 296 (526)
|+|++++....+ +.+.+.+...++....+. +|...+..++|+|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 667766544322 134444544444332222 3445688999999999988776543 899999988
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECCCe----------------EEEEeCCCCeEE--EEeecCCCCCCCC
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT----------------WCFYDLSSGICL--TQVSDAGTDGRPE 358 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~ 358 (526)
+ +...... ....+..++|+|||+.|+.++.++. |++|++.++... ..+. ...+..
T Consensus 161 g---~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~---~~~~~~ 233 (710)
T 2xdw_A 161 A---KELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE---FPDEPK 233 (710)
T ss_dssp T---EEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC---CTTCTT
T ss_pred C---CCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec---cCCCCe
Confidence 6 3332211 1223678999999999999988766 999999887632 2222 112344
Q ss_pred CeeEEEEccCCcEEEEEeC-----CCcEEEEECCC------Cc-eeeEecCCCCCeEEEEECCCCCEEEEEeCC----c-
Q 009763 359 GYTSAAFHPDGLILGTGTS-----EALVKIWDVKS------QA-NVAKFDGHVGAVTAISFSENGYYLATAAHD----G- 421 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----~- 421 (526)
.+..+.|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+.. .
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence 5789999999998888764 56899999976 43 35556556555554 478888877766542 2
Q ss_pred EEEEEcCCCcc--ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 422 VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 422 i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
|.+||+.++.. ...+..+.....+..+.|++++.++++...+ .+||.++.. .......+..+ .+.+..+.++
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~--~g~~~~~l~~~--~~~v~~~~~s 388 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA--TGALLKIFPLE--VGSVVGYSGQ 388 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--TCCEEEEECCC--SSEEEEEECC
T ss_pred EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC--CCCEEEecCCC--CceEEEEecC
Confidence 99999987652 3444443222467889999877788877766 556665431 22334444443 5678889999
Q ss_pred CCCCEEEEE-e---CCCcEEEeeCCCCC
Q 009763 498 PDAKYIAVG-S---MDRNLRVFGLPGND 521 (526)
Q Consensus 498 ~~~~~l~s~-~---~dg~v~iw~l~~~~ 521 (526)
+++..|+.. + ..+.|+.||+.+++
T Consensus 389 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 389 KKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 998766533 2 34789999997765
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=2.1e-13 Score=140.66 Aligned_cols=286 Identities=15% Similarity=0.124 Sum_probs=198.0
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecccccceeEEEEe----cCCCEEEEEeC-CCcEEEEeCCCC
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFV----TEGDLFLTGSA-DKTVRVWQGSED 297 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~-dg~i~iwd~~~~ 297 (526)
.+..+.|+|+|+++++++.|+.|.+||+. +++.+..+.... ....++|+ |+|+++++++. +++|.|+|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 56789999999999999999999999995 788888877544 36799999 69998777664 699999998776
Q ss_pred CceeeeEeccc----------Ccc-ceEEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEE
Q 009763 298 GNYDCKHTLKD----------HTA-EVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 365 (526)
Q Consensus 298 ~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 365 (526)
+.+..+.. |.. .+..+..++++..+ +....+|.|.++|............ ........+.|
T Consensus 277 ---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i----~~~~~~~d~~~ 349 (567)
T 1qks_A 277 ---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI----SAERFLHDGGL 349 (567)
T ss_dssp ---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE----ECCSSEEEEEE
T ss_pred ---cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee----eccccccCceE
Confidence 33333321 222 67788888876654 4445679999999987643332221 11135678899
Q ss_pred ccCCcEEEEEe-CCCcEEEEECCCCceeeEecC-----CCCCeEEEEECCCCCEE-EEEeC-Cc-EEEEEcCC-------
Q 009763 366 HPDGLILGTGT-SEALVKIWDVKSQANVAKFDG-----HVGAVTAISFSENGYYL-ATAAH-DG-VKLWDLRK------- 429 (526)
Q Consensus 366 ~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~l-~~~~~-d~-i~iwd~~~------- 429 (526)
+|+|++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++..+ +++.. ++ |.++|...
T Consensus 350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 99999887765 578999999999987766643 22211122 57874444 45533 34 99999987
Q ss_pred CccceEEecCCCCCCeeEEEEcCCCCEEEEEeC---------CeEEEEEecc-----cCcceeeee--ecCC-CCCcceE
Q 009763 430 LKNFRSFESSDSETPTNSVDFDHSGSYLAVASA---------DIRVYQVASV-----KADWNCIKT--FPDL-SGTGKAT 492 (526)
Q Consensus 430 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~---------di~v~~~~~~-----~~~~~~~~~--~~~~-~~~~~v~ 492 (526)
.+.+..+... ...-..+.++|+++++.+... .+.||++... ...+..+.. +... .....+.
T Consensus 429 ~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (567)
T 1qks_A 429 WKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV 506 (567)
T ss_dssp TSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred CEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence 5666777654 233355778999999998762 3899998554 111122211 1111 1245789
Q ss_pred EEEEcCCCCEEEEEeC-----CCcEEEeeCCCCC
Q 009763 493 CVKFGPDAKYIAVGSM-----DRNLRVFGLPGND 521 (526)
Q Consensus 493 ~~~~s~~~~~l~s~~~-----dg~v~iw~l~~~~ 521 (526)
.+.|+++|++++.+.. ++.|.|+|..+.+
T Consensus 507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 507 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 9999999998887643 7999999987653
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.9e-15 Score=149.95 Aligned_cols=255 Identities=9% Similarity=-0.011 Sum_probs=166.6
Q ss_pred EEEeCCCCcEEEEecccccc-----eeEEEEecCCCEEEEEeCC---CcEEEEeCCCCCceeeeEecccCccceEEEEEe
Q 009763 248 VLFDRPSGQIVTTLSGHSKK-----VTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319 (526)
Q Consensus 248 ~vwd~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 319 (526)
..+|..++..+..+..+... +.+++|+|+|++|+.+..+ ..|.+||+.++ +......++......+.|+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~~~l~~~~~~~~~~~~~s 89 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QAVQLTEGKGDNTFGGFIS 89 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EEEECCCSSCBCTTTCEEC
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cEEEeecCCCCccccceEC
Confidence 34577788877777765443 7788999999998776543 36888898775 3333223232223347899
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeE-------------------EEEccCCcEEEEE-----
Q 009763 320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS-------------------AAFHPDGLILGTG----- 375 (526)
Q Consensus 320 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~g----- 375 (526)
|+|++|+.++.++.|.+||+.+++........ ...... ..|+|++..++.+
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVD-----EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECC-----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEecc-----cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 99999999999999999999988765544311 111111 2456677665544
Q ss_pred eCCCcEEEEECCCCceeeEecCCCCCeEEEEECC-CCCEEEEEeCC------c-EEEEEcCCCccceEEecCCCCCCeeE
Q 009763 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHD------G-VKLWDLRKLKNFRSFESSDSETPTNS 447 (526)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 447 (526)
..+..|.+||+.+++..... .+...+..+.|+| ++..|+..+.+ . |.+||+..++.. .+........+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTH 242 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEE
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccc
Confidence 35668999999888765444 3566789999999 78877665432 3 888888765432 2222111235778
Q ss_pred EEEcCCCCEEEEEeCC-------eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC-CCCEEEEEe------------
Q 009763 448 VDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGS------------ 507 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d-------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~------------ 507 (526)
+.|+|+|++|+.++.+ +.+|++ .......+..+. ... +.|+| ||+++++++
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANP--ETLENEEVMVMP------PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECT--TTCCEEEEEECC------SEE-EEEECSSSSEEEEEECCC---------
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEEC--CCCCeEEeeeCC------CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 9999999987776432 555554 222222332222 123 88999 999888765
Q ss_pred ----CCCcEEEeeCCCCC
Q 009763 508 ----MDRNLRVFGLPGND 521 (526)
Q Consensus 508 ----~dg~v~iw~l~~~~ 521 (526)
.++.|++|++.++.
T Consensus 314 ~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp -CCCCCCEEEEEETTTTB
T ss_pred cccCCCCcEEEEecccCc
Confidence 34789999987654
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=9e-14 Score=143.47 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=198.4
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC--CCCceeeeEecccCc
Q 009763 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS--EDGNYDCKHTLKDHT 310 (526)
Q Consensus 233 ~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~h~ 310 (526)
+.+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +. +.+..+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIG- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecC-
Confidence 44557777788999999999999999888743 356799999999999999999999999995 43 445555432
Q ss_pred cceEEEEEe----cCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCC-----CCCC-CeeEEEEccCCc-EEEEEeCC
Q 009763 311 AEVQAVTVH----ATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTD-----GRPE-GYTSAAFHPDGL-ILGTGTSE 378 (526)
Q Consensus 311 ~~v~~l~~~----p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~-~v~~~~~~~~~~-~l~~g~~d 378 (526)
.....++|+ |+|+++++++. ++++.++|..+.+.+..+...... .|.. .+..+..++++. +++....+
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 346799999 69998887765 599999999999988877632110 0112 577888888754 44555567
Q ss_pred CcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEec-CCCCCCeeEEE-EcC
Q 009763 379 ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVD-FDH 452 (526)
Q Consensus 379 g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~-~~~~~~i~~i~-~s~ 452 (526)
|.|.++|....+... .+. .......+.|+|+|++++++... + |.++|+.+++....+.. .....+-..+. ++|
T Consensus 320 g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred CeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 999999997754322 222 33467789999999998887754 3 99999999988777765 32112112222 588
Q ss_pred CCCEE-EEEe--CC-eEEEEEeccc---CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC-------CCcEEEeeCC
Q 009763 453 SGSYL-AVAS--AD-IRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-------DRNLRVFGLP 518 (526)
Q Consensus 453 ~~~~l-~~~~--~d-i~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~v~iw~l~ 518 (526)
++..+ +++. .+ +.+++.+... ..|+.+.++... ...-..+..+|++++|++... .+.|.+||+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 75444 4442 23 8899875422 127777777653 222244778999999998763 4599999987
Q ss_pred CC
Q 009763 519 GN 520 (526)
Q Consensus 519 ~~ 520 (526)
..
T Consensus 477 ~~ 478 (567)
T 1qks_A 477 AM 478 (567)
T ss_dssp GC
T ss_pred cc
Confidence 65
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.8e-14 Score=133.65 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=162.1
Q ss_pred CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 225 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~-t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
...+++++++|++++ +...++.|.+|+..++........+...+.+++++++|+++++.. ++.|.+||..... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~----~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN----Q 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC----C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce----E
Confidence 578999999999777 546788999999765543322233445688999999998666655 8899999987632 2
Q ss_pred Eecc-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEE
Q 009763 304 HTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 382 (526)
Q Consensus 304 ~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 382 (526)
..+. .....+.+++++++|+++++...++.|.+|+..+........ .....+..++++++|+++++...++.|.
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-----CSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-----ccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2222 233568999999999987777778999999876554332211 1223578899999999887777788999
Q ss_pred EEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEe
Q 009763 383 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 461 (526)
+||............+...+.+++++++|.++++...++ |.+||........ ... .....+..++++++|.++++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEG
T ss_pred EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEEC
Confidence 999877654433333336789999999997777666565 9999986543322 211 1134689999999998777766
Q ss_pred CC--eEEEEE
Q 009763 462 AD--IRVYQV 469 (526)
Q Consensus 462 ~d--i~v~~~ 469 (526)
.+ |++|++
T Consensus 253 ~~~~v~~~~~ 262 (270)
T 1rwi_B 253 GNDRVVKLTS 262 (270)
T ss_dssp GGTEEEEECC
T ss_pred CCCEEEEEcC
Confidence 55 666665
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=1.4e-14 Score=155.11 Aligned_cols=274 Identities=13% Similarity=0.010 Sum_probs=177.0
Q ss_pred CCCCEEEEEeCCC---c--EEEEeCCCCcEEEEec------ccccceeEEEEecCCCEEE-----EEeCCCcEEEEeCCC
Q 009763 233 YSKDVIATGGVDT---N--AVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFL-----TGSADKTVRVWQGSE 296 (526)
Q Consensus 233 ~~~~~l~t~~~dg---~--v~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~-----s~s~dg~i~iwd~~~ 296 (526)
|+|++++....++ . +.+.+...+.....+. +|...+.+++|+|||++|+ .|+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6777776655433 2 3444444444333332 4555789999999999988 344456899999988
Q ss_pred CCceeeeEecccCccce--EEEEEecCCCEEEEEECCCe-------------EEEEeCCCCeE--EEEeecCCCCCCCCC
Q 009763 297 DGNYDCKHTLKDHTAEV--QAVTVHATNKYFVTASLDNT-------------WCFYDLSSGIC--LTQVSDAGTDGRPEG 359 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v--~~l~~~p~~~~l~s~s~dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~~ 359 (526)
+. .+. ..+...+ ..++|+|+|+.|+.++.|.. |++|++.++.. ...+. ...+...
T Consensus 157 g~---~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~---~~~~~~~ 228 (695)
T 2bkl_A 157 GE---WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE---RTGDPTT 228 (695)
T ss_dssp CC---BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC---CCCCTTC
T ss_pred CC---CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe---cCCCCEE
Confidence 63 220 1121222 67899999999999998876 99999998762 22222 1134457
Q ss_pred eeEEEEccCCcEEEEEeCCC----cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC---Cc-EEEEEcCCCc
Q 009763 360 YTSAAFHPDGLILGTGTSEA----LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH---DG-VKLWDLRKLK 431 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---d~-i~iwd~~~~~ 431 (526)
+..+.|+|||++|+.++.++ .|.+||..++.. ..+..+...+....+ ++|.+++.+.. ++ |.+||+.++.
T Consensus 229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 88999999999888877665 677777655543 344445555666666 55664444432 24 9999998765
Q ss_pred c--ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 432 N--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 432 ~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
. ...+..+.....+..+.|+ ++.++++...+ .+||.++.. ......+..+ +.+.+..+.++++++.|+...
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~---g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK---GKPVRTVQLP-GVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT---CCEEEECCCS-SSSEECCCBSCTTCSEEEEEE
T ss_pred ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC---CCeeEEecCC-CCeEEEEeecCCCCCEEEEEE
Confidence 3 2344333224457888888 66777777766 778877532 2233333322 245677888999998776332
Q ss_pred ----CCCcEEEeeCCCCC
Q 009763 508 ----MDRNLRVFGLPGND 521 (526)
Q Consensus 508 ----~dg~v~iw~l~~~~ 521 (526)
..+.|++||+.+++
T Consensus 382 ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 382 TSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EETTEEEEEEEEETTTCC
T ss_pred cCCCCCCEEEEEECCCCc
Confidence 34789999997654
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.66 E-value=1.9e-12 Score=122.85 Aligned_cols=275 Identities=9% Similarity=0.064 Sum_probs=188.4
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
...+.++.+.++|++.++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +. .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~- 94 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-F- 94 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E-
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-e-
Confidence 4578899999999988887778999999988 65543 233344678999999999988777778889999977 32 1
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
....+......+.++++.++++++++...++.|..||.. ++... +... .....+..+++.++++++++...++.|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~---~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLP---NKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECS---STTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCC---CCCCCceeEEECCCCCEEEEecCCCeE
Confidence 222233344678999999999988877778899999987 55442 2211 123468899999999977776667889
Q ss_pred EEEECCCCceeeE-ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEE
Q 009763 382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459 (526)
Q Consensus 382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 459 (526)
..||. +++.... .......+..++++++|.+.++....+ |.+||. ++.... +........+..++++++|.+.++
T Consensus 170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEEe
Confidence 99998 5544332 223445789999999998777666555 999998 444322 322222456889999999986666
Q ss_pred EeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 460 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 460 ~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
...+ +..|+. ..... .+........+.+++++++|++.++.. . .|..++.
T Consensus 247 ~~~~~~i~~~~~---~g~~~---~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 247 EWGANQIGRITN---DNTIQ---EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ETTTTEEEEECT---TSCEE---EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ccCCCeEEEECC---CCcEE---EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 5444 555543 12111 221111245678899999998665554 4 6666664
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=2.9e-13 Score=130.85 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=159.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
....+.+. ++.++++...++.|.+||..+++.+.++.. ......+++++++.++++...++.|.+||..+. +...
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~---~~~~ 119 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY---EITG 119 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT---EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC---eEEE
Confidence 35667774 455666666689999999999999888853 466889999999865555448899999999876 4443
Q ss_pred ecccCc-----cceEEEEEecCCCEEEEEE--CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 305 TLKDHT-----AEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 305 ~~~~h~-----~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
.+.... .....+++ ++..+++++ .++.|.+||+.+++.+..+... .....+.++|+|++++++..
T Consensus 120 ~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEEEEEBCC
T ss_pred EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCEEEEECC
Confidence 333221 14556777 355555555 4899999999999988877532 23567889999998777765
Q ss_pred C----------CcEEEEECCCCceeeEecCC-CCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCee
Q 009763 378 E----------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTN 446 (526)
Q Consensus 378 d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~ 446 (526)
+ +.|.+||..+++....+... ......++|+|++.+|+++.. .|.+||..+++...............
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~ 270 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYY 270 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEE
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceE
Confidence 4 78999999998877666532 236899999999999888765 79999998876532111111135688
Q ss_pred EEEEcCCCCEEEEEe
Q 009763 447 SVDFDHSGSYLAVAS 461 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~ 461 (526)
.++++|++..|+++.
T Consensus 271 gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 271 GLTVNPNNGEVYVAD 285 (328)
T ss_dssp EEEECTTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEc
Confidence 999999555555544
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=4.2e-14 Score=137.75 Aligned_cols=220 Identities=11% Similarity=0.113 Sum_probs=150.9
Q ss_pred CCeEEEEecCCCCEEEEEeCC---C--cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC------------
Q 009763 224 PGIVSLDIHYSKDVIATGGVD---T--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD------------ 286 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~d---g--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------------ 286 (526)
..+.+++|+|+|+.|+.++.+ + .|.+|++.+++.......+ . +..+.|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357889999999999887654 2 3888888887765554433 3 9999999999988887632
Q ss_pred ---------------CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC-------eEEEEeCCCCeE
Q 009763 287 ---------------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-------TWCFYDLSSGIC 344 (526)
Q Consensus 287 ---------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-------~i~iwd~~~~~~ 344 (526)
..|.+||+.++ +.+..+.. . .+..+.|+|+| ++++++.++ ...+|.+.+++.
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTT---EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cceeecCcccccCccceEEEEECCCC---eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 57899999775 33233333 3 78899999999 877776542 334444435543
Q ss_pred EEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC--------CcEEEEECCCCceeeEecCCCCCeEE-EEECCCCCEEE
Q 009763 345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVAKFDGHVGAVTA-ISFSENGYYLA 415 (526)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~l~ 415 (526)
..+.. + ..+.. ++|||+.|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ +++
T Consensus 211 -~~l~~-----~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 211 -EKMFE-----K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp -EEEEE-----E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEE
T ss_pred -EEecc-----C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEE
Confidence 33321 1 23433 39999988777644 3688888 55554444555677886 9999 88 888
Q ss_pred EEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEe
Q 009763 416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVA 470 (526)
Q Consensus 416 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~ 470 (526)
+++.++ ++|| +.+++. ..+... ...+.++.|+| .++++++.+ ..||.++
T Consensus 278 ~~~~~~~~~l~-~~~g~~-~~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEI-KPIAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEETTEEEEE-EESSSE-EEEECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEecCCcEEEE-EcCCce-EEEecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 888887 8888 775544 333322 56789999999 666666655 5899885
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.64 E-value=1.9e-12 Score=127.05 Aligned_cols=267 Identities=10% Similarity=-0.005 Sum_probs=177.6
Q ss_pred cCCCCEEEEEeC--CC---cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe----------CCCcEEEEeCCC
Q 009763 232 HYSKDVIATGGV--DT---NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSE 296 (526)
Q Consensus 232 s~~~~~l~t~~~--dg---~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~ 296 (526)
.|+++++++... .+ .|.+||..+++.+..+.....+ .++++|||++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 356666555542 22 7899999999998888754444 999999999988875 367899999977
Q ss_pred CCceeeeEecccC-------ccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEE-eecCCCCCCCCCeeEEEEc
Q 009763 297 DGNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 297 ~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~ 366 (526)
. +.+..+.-. ......+.|+|+|++|+++.. ++.|.++| .+++.+.. +... .++.+.
T Consensus 107 ~---~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---------~~~~~~ 173 (373)
T 2mad_H 107 F---LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---------TCYHIH 173 (373)
T ss_pred C---cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---------ceEEEE
Confidence 5 333332211 123558999999999998874 57899999 99988777 5311 124555
Q ss_pred cCC-cEEEEEeCCCcEEEEECCCCceeeEec-----CCCCCe-EEEEECCCCCEEEEEeCCc-EEEEEcCCCc--cceEE
Q 009763 367 PDG-LILGTGTSEALVKIWDVKSQANVAKFD-----GHVGAV-TAISFSENGYYLATAAHDG-VKLWDLRKLK--NFRSF 436 (526)
Q Consensus 367 ~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~i-~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~--~~~~~ 436 (526)
|++ ..+++.+.||.+.++|. +++...... ....++ ....|.+++..++..+..+ +.+.|+.... ....+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 654 45666778999999999 877663322 111221 2345566554433333455 9999986542 22222
Q ss_pred ecCC--------CCCCeeEEEEcCCCCEEEEEeC------------CeEEEEEecccCcceeeeeecCCCCCcceEEEEE
Q 009763 437 ESSD--------SETPTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 496 (526)
Q Consensus 437 ~~~~--------~~~~i~~i~~s~~~~~l~~~~~------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 496 (526)
.... .......+.++|++..++++.. .+.++|. ...+.+..+.. .....+++|
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~---g~~p~~i~~ 325 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISL---GHDVDAISV 325 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEEC---CCCcCeEEE
Confidence 2110 0122445789999998888643 2555665 45666666643 346789999
Q ss_pred cCCCC-EEEEEe-CCCcEEEeeCCCCC
Q 009763 497 GPDAK-YIAVGS-MDRNLRVFGLPGND 521 (526)
Q Consensus 497 s~~~~-~l~s~~-~dg~v~iw~l~~~~ 521 (526)
+|||+ .++++. .++.|.+||+.+.+
T Consensus 326 s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 326 AQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 99999 788877 58999999998765
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=7.2e-14 Score=130.88 Aligned_cols=238 Identities=10% Similarity=0.052 Sum_probs=161.4
Q ss_pred ceeEEEEecCCCEEE-EEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 009763 267 KVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 345 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~ 345 (526)
...+++++++|++++ +.+.++.|.+|+..+.. .......+...+.+++++++++++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 578899999999777 44678899999875531 1111123335688999999998666555 889999998765432
Q ss_pred EEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEE
Q 009763 346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL 424 (526)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i 424 (526)
.+.. .....+..++++++|.++++...++.|.+|+..+.............+.+++++++|+++++...++ |.+
T Consensus 101 -~~~~----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 101 -VLPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp -ECCC----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred -eeec----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 2211 1224688999999999888877788999998665543332222334678999999998776665555 999
Q ss_pred EEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCE
Q 009763 425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 502 (526)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 502 (526)
||............ ....+..++++++|.++++...+ +.+|+.+ ... ...... .+...+.+++++++|++
T Consensus 176 ~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~--~~~---~~~~~~-~~~~~p~~i~~~~~g~l 247 (270)
T 1rwi_B 176 LEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG--STT---STVLPF-TGLNTPLAVAVDSDRTV 247 (270)
T ss_dssp ECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTT--CSC---CEECCC-CSCSCEEEEEECTTCCE
T ss_pred EecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCC--CCc---ceeecc-CCCCCceeEEECCCCCE
Confidence 99876554322111 12568899999999766666444 6666542 111 111111 12356899999999998
Q ss_pred EEEEeCCCcEEEeeCCCCC
Q 009763 503 IAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 503 l~s~~~dg~v~iw~l~~~~ 521 (526)
+++...++.|++|++....
T Consensus 248 ~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 248 YVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEGGGTEEEEECCCGGG
T ss_pred EEEECCCCEEEEEcCCCcc
Confidence 8888889999999987654
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=1.5e-13 Score=133.32 Aligned_cols=271 Identities=10% Similarity=0.037 Sum_probs=183.5
Q ss_pred ecCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe----------CCCcEEEEeCC
Q 009763 231 IHYSKDVIATGGV-----DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGS 295 (526)
Q Consensus 231 ~s~~~~~l~t~~~-----dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~dg~i~iwd~~ 295 (526)
..|+++.+++... ++.|.++|..+++.+..+.....+ . +.++|||+++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4578887777654 679999999999999988865555 4 99999999887765 36789999998
Q ss_pred CCCceeeeEecccC-------ccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc
Q 009763 296 EDGNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 296 ~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
+. +.+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+++.+..+... + |..+.
T Consensus 118 t~---~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g------~~~~~ 185 (386)
T 3sjl_D 118 TL---LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---D------CYHIF 185 (386)
T ss_dssp TC---CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---S------EEEEE
T ss_pred CC---eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---C------cceee
Confidence 86 444443211 124567999999999988874 689999999999999888532 1 12223
Q ss_pred c-CCcEEEEEeCCCcEEEEECCC-CceeeEec----CCCCCeE-EEEEC-CCCCEEEEEeCCc-EEEEEcCCCc--cceE
Q 009763 367 P-DGLILGTGTSEALVKIWDVKS-QANVAKFD----GHVGAVT-AISFS-ENGYYLATAAHDG-VKLWDLRKLK--NFRS 435 (526)
Q Consensus 367 ~-~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~----~~~~~i~-~l~~s-~~~~~l~~~~~d~-i~iwd~~~~~--~~~~ 435 (526)
| ....+++.+.||.+.+.++.+ ++...... ....++. ...|. ++|+++++.. ++ |.++|+.... ....
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecc
Confidence 4 445666777889988888876 55432211 1112222 24554 6787666544 55 9999997654 3333
Q ss_pred EecC--------CCCCCeeEEEEcCCCCEEEEEeC----------CeEEEEEecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 436 FESS--------DSETPTNSVDFDHSGSYLAVASA----------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 436 ~~~~--------~~~~~i~~i~~s~~~~~l~~~~~----------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
+... -.......+.++++++.+++... .-+||-++. .+++.+..+.. ...+.+++++
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~--~t~kv~~~i~v---g~~~~~lavs 339 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFEM---GHEIDSINVS 339 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET--TTCCEEEEEEE---EEEECEEEEC
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC--CCCeEEEEEEC---CCCcceEEEC
Confidence 3310 00123445778999999888642 134555543 45566666554 3467899999
Q ss_pred CCCC-EEEEEe-CCCcEEEeeCCCCC
Q 009763 498 PDAK-YIAVGS-MDRNLRVFGLPGND 521 (526)
Q Consensus 498 ~~~~-~l~s~~-~dg~v~iw~l~~~~ 521 (526)
+|++ +|++++ .++.|.++|..+++
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 9997 677654 48999999998764
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=9.2e-14 Score=148.66 Aligned_cols=231 Identities=10% Similarity=-0.018 Sum_probs=154.8
Q ss_pred cCCCCCeEEEEecCCCCEEEE-----EeCCCcEEEEeCCCCcEEEEecccccce--eEEEEecCCCEEEEEeCCCc----
Q 009763 220 KTSKPGIVSLDIHYSKDVIAT-----GGVDTNAVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGSADKT---- 288 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t-----~~~dg~v~vwd~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~dg~---- 288 (526)
..|...+.+++|||||++||. |+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 345557899999999999984 3445689999999987641 1122223 68999999999999988776
Q ss_pred ---------EEEEeCCCCCc-eeeeEecccCccceEEEEEecCCCEEEEEECCC----eEEEEeCCCCeEEEEeecCCCC
Q 009763 289 ---------VRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN----TWCFYDLSSGICLTQVSDAGTD 354 (526)
Q Consensus 289 ---------i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~ 354 (526)
|++|++.++.. ...+.....|...+..+.|+|+|++|+.++.++ .|.+||..++.......
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~----- 269 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK----- 269 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-----
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-----
Confidence 99999987532 124444445667889999999999988887666 67778776554333322
Q ss_pred CCCCCeeEEEEccCCcEEEEEe---CCCcEEEEECCCCce---eeEecCC-CCCeEEEEECCCCCEEEEEeCCc-EEEEE
Q 009763 355 GRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN---VAKFDGH-VGAVTAISFSENGYYLATAAHDG-VKLWD 426 (526)
Q Consensus 355 ~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d~-i~iwd 426 (526)
+...+....+ ++|.+++.+. .++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++...++ .+||.
T Consensus 270 -~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 270 -GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp -CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 1123455555 5666444443 257899999987653 3333333 4467888888 677888888776 55554
Q ss_pred cC-CCccceEEecCCCCCCeeEEEEcCCCCEEEEEe
Q 009763 427 LR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 427 ~~-~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 461 (526)
+. .++....+..+. ...+..+.++|++..++...
T Consensus 347 ~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 347 ATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp EETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEE
T ss_pred EeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEE
Confidence 43 344444443321 34577788899997776443
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=3.8e-13 Score=126.35 Aligned_cols=214 Identities=12% Similarity=0.039 Sum_probs=160.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCc-cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC
Q 009763 276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 354 (526)
Q Consensus 276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 354 (526)
.+++|++++.|+.|.+||..++ +.+..+..+. ..+.++.+.|+|++++ +.++.|..||. +++.+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC---
T ss_pred CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC---
Confidence 4678999999999999998776 6667776655 4788999999999888 45788999999 88888888631
Q ss_pred CCCCCeeEEEEccCCcEEEEEeC-CCcEEEEECCCCceeeEecC------CCCCeEEEEECCCCCEEEEEeCCc-EEEEE
Q 009763 355 GRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQANVAKFDG------HVGAVTAISFSENGYYLATAAHDG-VKLWD 426 (526)
Q Consensus 355 ~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd 426 (526)
....+.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+.+.++|.++++...++ |..||
T Consensus 75 -~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 75 -AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp -TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred -CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 1236788999999999999887 778888885 6777666541 222455678899999999988887 99999
Q ss_pred cCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCC----CCcceEEEEEcCCCCE
Q 009763 427 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLS----GTGKATCVKFGPDAKY 502 (526)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 502 (526)
.. ++.+..+... ..+..+.+.++|.++++++.+.+|+.++.. +.+.+..+.... ....+..+...++|++
T Consensus 153 ~~-G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 153 PN-GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLE--SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp TT-SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTT--TCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred CC-CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCc--CCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 88 8888888764 356678889999999988877555555432 233433332110 1234788888889988
Q ss_pred EEEE
Q 009763 503 IAVG 506 (526)
Q Consensus 503 l~s~ 506 (526)
+++.
T Consensus 227 ~v~~ 230 (276)
T 3no2_A 227 YICN 230 (276)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7776
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=4e-12 Score=121.72 Aligned_cols=231 Identities=11% Similarity=0.117 Sum_probs=160.7
Q ss_pred CeEEEEecCCCCEEEE-------EeCCCcEEEEeCCCCcEEEEec----ccccceeEEEEecC-CCEEEEEeCCCcEEEE
Q 009763 225 GIVSLDIHYSKDVIAT-------GGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTE-GDLFLTGSADKTVRVW 292 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t-------~~~dg~v~vwd~~~~~~~~~~~----~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iw 292 (526)
...+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++.. .+.|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence 4679999999998888 6778999999988777643322 25567899999998 76555544 4478899
Q ss_pred eCCCCCceeeeEe-cc---c-CccceEEEEEecCCCEEEEEECC---------------CeEEEEeCCCCeEEEEeecCC
Q 009763 293 QGSEDGNYDCKHT-LK---D-HTAEVQAVTVHATNKYFVTASLD---------------NTWCFYDLSSGICLTQVSDAG 352 (526)
Q Consensus 293 d~~~~~~~~~~~~-~~---~-h~~~v~~l~~~p~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~~~~ 352 (526)
|.. + +.... .. . ....+.+++++++|+++++...+ +.|..||.. ++.......
T Consensus 98 d~~-g---~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-- 170 (314)
T 1pjx_A 98 QTD-G---TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-- 170 (314)
T ss_dssp ETT-S---CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--
T ss_pred eCC-C---CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--
Confidence 987 3 22221 11 1 22458899999999888776655 578888876 544332221
Q ss_pred CCCCCCCeeEEEEc----cCCcEEEEE-eCCCcEEEEECC-CCc-----eeeEecCCC-CCeEEEEECCCCCEEEEEeCC
Q 009763 353 TDGRPEGYTSAAFH----PDGLILGTG-TSEALVKIWDVK-SQA-----NVAKFDGHV-GAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 353 ~~~~~~~v~~~~~~----~~~~~l~~g-~~dg~i~iwd~~-~~~-----~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~d 420 (526)
......++|+ ++++.++++ ..++.|.+||+. +++ ....+..+. ..+..++++++|.++++...+
T Consensus 171 ----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 171 ----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp ----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 1246789999 999655554 567899999986 343 222333333 568899999999888877666
Q ss_pred c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEE
Q 009763 421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 469 (526)
Q Consensus 421 ~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 469 (526)
+ |.+||..+++....+..+ ...+.+++|+++|.+|++++.. +..|+.
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp TEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 5 999999877776666554 3678999999999977666544 555544
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=2.7e-11 Score=114.83 Aligned_cols=234 Identities=12% Similarity=0.035 Sum_probs=166.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-EEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
...+.+++++++|.++++...++.|..|+.. ++.. ..+......+.++++.+++.++++...++.|.+||. ++. ..
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~ 132 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-IR 132 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-EE
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-EE
Confidence 3578999999999988887778899999986 4432 222234567899999999988888777889999998 322 11
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
......+...+..+++.++|.++++...++.|..||. +++...... . .....+..++++++|.++++...++.|
T Consensus 133 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-~---~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 133 -EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI-P---TPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-S---STTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC-C---CCCCcceeEEECCCCCEEEEccCCceE
Confidence 2222334567899999999988877777889999999 665443211 1 223467899999999987777678899
Q ss_pred EEEECCCCceeeE-ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEE
Q 009763 382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459 (526)
Q Consensus 382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 459 (526)
.+||. +++.... +..+...+.+++++++|.++++...++ |..||. ++. +..+........+.++.+ ++|.+.++
T Consensus 207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 207 GRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred EEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 99999 6654322 233456789999999998666654544 999998 343 344433333457889999 88888777
Q ss_pred EeCC-eEEEEE
Q 009763 460 ASAD-IRVYQV 469 (526)
Q Consensus 460 ~~~d-i~v~~~ 469 (526)
...+ +..++.
T Consensus 283 ~~~~~l~~~~~ 293 (299)
T 2z2n_A 283 MECDKIGKLTL 293 (299)
T ss_dssp ETTTEEEEEEE
T ss_pred ecCCcEEEEEc
Confidence 6544 555554
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=1.4e-12 Score=128.87 Aligned_cols=268 Identities=11% Similarity=0.058 Sum_probs=181.5
Q ss_pred CCCCEEEEEeC-C----CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe----------CCCcEEEEeCCCC
Q 009763 233 YSKDVIATGGV-D----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSED 297 (526)
Q Consensus 233 ~~~~~l~t~~~-d----g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~ 297 (526)
++++.+++... + +.|.++|..+++.+.++..-..+ .+.++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 34555544443 2 69999999999999998865555 899999999888776 4678999999886
Q ss_pred CceeeeEeccc-------CccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC
Q 009763 298 GNYDCKHTLKD-------HTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (526)
Q Consensus 298 ~~~~~~~~~~~-------h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 368 (526)
+.+..+.- .......+.|+|+|++++++.. ++.|.+.|+.+++.+..+... + +....|+
T Consensus 160 ---~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~---g------~~~~~p~ 227 (426)
T 3c75_H 160 ---LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP---D------CYHIFPA 227 (426)
T ss_dssp ---CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---S------EEEEEEE
T ss_pred ---cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC---C------ceeeccC
Confidence 34443321 1233567899999999999875 578999999999998888632 1 1334443
Q ss_pred C-cEEEEEeCCCcEEEEECCCCceeeE----ecCCCCCe-EEEEECCCCCEEEEEeCCc-EEEEEcCCCcc--ceEEecC
Q 009763 369 G-LILGTGTSEALVKIWDVKSQANVAK----FDGHVGAV-TAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESS 439 (526)
Q Consensus 369 ~-~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~i-~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~ 439 (526)
+ ..+++.+.||.+.+.+..+++.... +.....++ ..+.|.+++..++..+..+ |.+.|+..... +..+...
T Consensus 228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 3 5556666788888888755554422 22112221 2356788888777666666 99999865432 1222110
Q ss_pred C--------CCCCeeEEEEcCCCCEEEEEeC------------CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCC
Q 009763 440 D--------SETPTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 499 (526)
Q Consensus 440 ~--------~~~~i~~i~~s~~~~~l~~~~~------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (526)
. .......+.++|++..+++... .+.++|. .+.+.+..+.. .....++.|+||
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~v---g~~P~gia~spD 380 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIEL---GHEIDSINVSQD 380 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEE---EEEECEEEECCS
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEEC---CCCcCeEEEccC
Confidence 0 0112234789999988877642 2666665 55666666653 335789999999
Q ss_pred CC-EEEEEe-CCCcEEEeeCCCCC
Q 009763 500 AK-YIAVGS-MDRNLRVFGLPGND 521 (526)
Q Consensus 500 ~~-~l~s~~-~dg~v~iw~l~~~~ 521 (526)
|+ .++++. .++.|.++|+.+.+
T Consensus 381 g~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 381 AEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCeEEEEECCCCC
Confidence 99 888888 58999999998765
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=1.1e-12 Score=141.24 Aligned_cols=274 Identities=12% Similarity=0.048 Sum_probs=172.4
Q ss_pred CCCCEEEEEeCCCc---EEEE--eCC---CCcEEEEe------cccccceeEEEEecCCCEEEEEeCC-----CcEEEEe
Q 009763 233 YSKDVIATGGVDTN---AVLF--DRP---SGQIVTTL------SGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQ 293 (526)
Q Consensus 233 ~~~~~l~t~~~dg~---v~vw--d~~---~~~~~~~~------~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd 293 (526)
|+|++++....++. -.+| +.. .+.....+ .+|...+..++|+|||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78887776654432 4445 443 33332221 2344468899999999998877654 4699999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCe--------------EEEEeCCCCeE--EEEeecCCCCCCC
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT--------------WCFYDLSSGIC--LTQVSDAGTDGRP 357 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~--------------i~iwd~~~~~~--~~~~~~~~~~~~~ 357 (526)
+.++. .+.. ..+...+..++|+|+ +.|+.++.++. |++|++.++.. ...+.. ..+.
T Consensus 196 l~tg~---~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~---~~~~ 267 (741)
T 1yr2_A 196 VADGK---PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT---PELP 267 (741)
T ss_dssp TTTCC---EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC---TTCT
T ss_pred CCCCC---CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc---CCCC
Confidence 98863 2221 112222357899999 99988887654 89999987752 222221 1233
Q ss_pred CCeeEEEEccCCcEEEEEeCCC-----cEEEEECCCC--ceeeEecCCCCCeEEEEECCCCCEEEEEeCC----c-EEEE
Q 009763 358 EGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHD----G-VKLW 425 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----~-i~iw 425 (526)
..+..+.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... +|+|..|+..+.+ . |.+|
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEE
Confidence 3578999999999888776543 8999999876 31445554554555553 4788887776653 2 9999
Q ss_pred EcCCCc-cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCE
Q 009763 426 DLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 502 (526)
Q Consensus 426 d~~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 502 (526)
|+.++. ....+..+ ....+..+.|+ ++.++++...+ .+||.++.. ......+... +.+.+..+.++++++.
T Consensus 347 d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~---g~~~~~l~~~-~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD---GKPAGAVSLP-GIGSASGLSGRPGDRH 420 (741)
T ss_dssp ECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT---SCEEEECBCS-SSCEEEEEECCBTCSC
T ss_pred eCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC---CCceeeccCC-CCeEEEEeecCCCCCE
Confidence 998752 33333332 23456677787 55666666666 677777532 2233333321 2567888999999886
Q ss_pred EEEE----eCCCcEEEeeCCCCC
Q 009763 503 IAVG----SMDRNLRVFGLPGND 521 (526)
Q Consensus 503 l~s~----~~dg~v~iw~l~~~~ 521 (526)
|+.. ...+.|++||+.+++
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEcCCCCCCEEEEEECCCCc
Confidence 6633 234789999987643
No 204
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.54 E-value=4.5e-15 Score=111.08 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=50.0
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+||++++++||++| |||+|||.+|++|+..+++||+|+++|+.++|++.
T Consensus 15 ~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 15 FRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp TBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred eECcccCchhcCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 57999999999999997 99999999999999999999999999999999887
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.53 E-value=2.4e-13 Score=132.38 Aligned_cols=171 Identities=15% Similarity=0.078 Sum_probs=133.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----------EEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~-----------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
.+..+++++...++++|+.++ +++|++.+.. ..... .+.+ |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 588999999999999999885 5569854322 11222 3556 999999 88999998 889999999
Q ss_pred CCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
+.+.. .......|...+.++.+.+. .+++++.||.+.+||+.++.... .. ..|+|++|+|+| ++
T Consensus 113 v~sl~---~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~--------~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 113 LEELS---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA--------QNVTSFDVTNSQ--LA 176 (388)
T ss_dssp SSSTT---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE--------ESEEEEEECSSE--EE
T ss_pred chhhh---ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc--------CCceEEEEcCCc--eE
Confidence 98753 23334556777888877644 38889999999999999887654 22 379999999999 67
Q ss_pred EEeCCCcEEEEECCCCce--eeEe------c---CCCCCeEEEEECCCCCEEEEE
Q 009763 374 TGTSEALVKIWDVKSQAN--VAKF------D---GHVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~l~~s~~~~~l~~~ 417 (526)
.|..||.+++|+...+.. ...+ . +|...|.++.|.+++.++++-
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 889999999999887765 5556 2 367889999999999998874
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=9.5e-12 Score=119.08 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=158.1
Q ss_pred cccceeEEEEecCCCEEEE-------EeCCCcEEEEeCCCCCceeeeEe--cccCccceEEEEEecC-CCEEEEEECCCe
Q 009763 264 HSKKVTSVKFVTEGDLFLT-------GSADKTVRVWQGSEDGNYDCKHT--LKDHTAEVQAVTVHAT-NKYFVTASLDNT 333 (526)
Q Consensus 264 h~~~V~~l~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~~--~~~h~~~v~~l~~~p~-~~~l~s~s~dg~ 333 (526)
.-....+++|++++.++++ +..++.|.+||..++. ...... ..++...+.++.++++ +++++ ++..+.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~ 93 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-KTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLG 93 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-EEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-EEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCC
Confidence 3345689999999988777 5678899999976642 111111 0124567899999998 65444 444558
Q ss_pred EEEEeCCCCeEEEE-eecCCCCCCCCCeeEEEEccCCcEEEEEeCC---------------CcEEEEECCCCceeeEecC
Q 009763 334 WCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---------------ALVKIWDVKSQANVAKFDG 397 (526)
Q Consensus 334 i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---------------g~i~iwd~~~~~~~~~~~~ 397 (526)
|.+||.. ++.... .. .........+.+++++++|+++++...+ +.|..||.. ++... +..
T Consensus 94 l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~ 169 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKK-DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDT 169 (314)
T ss_dssp EEEEETT-SCEEECCSB-CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEE
T ss_pred EEEEeCC-CCEEEEEec-cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ecc
Confidence 9999998 665432 21 1111122458899999999888777655 567777765 54333 222
Q ss_pred CCCCeEEEEEC----CCCCEEEEEe-CCc-EEEEEcC-CCccc--eEEe-cCCCC-CCeeEEEEcCCCCEEEEEeCC--e
Q 009763 398 HVGAVTAISFS----ENGYYLATAA-HDG-VKLWDLR-KLKNF--RSFE-SSDSE-TPTNSVDFDHSGSYLAVASAD--I 464 (526)
Q Consensus 398 ~~~~i~~l~~s----~~~~~l~~~~-~d~-i~iwd~~-~~~~~--~~~~-~~~~~-~~i~~i~~s~~~~~l~~~~~d--i 464 (526)
+......++|+ ++++.|+++. .++ |.+||+. .++.. ..+. ..... ..+..++++++|.++++...+ +
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 33457889999 9997666554 444 9999986 33311 1111 11112 457889999999988877555 6
Q ss_pred EEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEE-eCCCcEEEeeCCCCC
Q 009763 465 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG-SMDRNLRVFGLPGND 521 (526)
Q Consensus 465 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~l~~~~ 521 (526)
.+|+.+ +...+..+..+ ...+.+++|+++++.|+++ ..++.|..|++....
T Consensus 250 ~~~d~~----~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 250 EVFGPD----GGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEECTT----CBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEcCC----CCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 666642 12223333332 4678999999999955544 456899999987543
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=2.7e-12 Score=138.27 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=155.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCc--------
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVD-----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT-------- 288 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-------- 288 (526)
|...+..++|||||++||.+..+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33468899999999999887654 3599999999987653 212223468999999 88888877654
Q ss_pred ------EEEEeCCCCCc-eeeeEecccCccceEEEEEecCCCEEEEEECCC-----eEEEEeCCCCeE--EEEeecCCCC
Q 009763 289 ------VRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGIC--LTQVSDAGTD 354 (526)
Q Consensus 289 ------i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~~~--~~~~~~~~~~ 354 (526)
|++|++.++.. -..+.....+...+..+.|+|+|++|+..+.++ .|.+||+.++.. ...+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--- 315 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD--- 315 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---
Confidence 88999876532 123333333444688999999999988877544 899999987721 3344321
Q ss_pred CCCCCeeEEEEccCCcEEEEEeCC----CcEEEEECCCC--ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEE--E
Q 009763 355 GRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL--W 425 (526)
Q Consensus 355 ~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i--w 425 (526)
....... ++|+|..|+..+.+ +.|.+||+.++ .....+..+...+..+.|+ ++.++++...++ .+| +
T Consensus 316 --~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 316 --LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp --SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred --CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 1233333 34888877777653 45999999875 3333344444557778887 667777777776 444 4
Q ss_pred EcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeC--C--eEEEEEec
Q 009763 426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA--D--IRVYQVAS 471 (526)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~--d--i~v~~~~~ 471 (526)
|+ .+.....+.... ...+..+.++|++..|+.... . ..+|.++.
T Consensus 392 ~~-~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 392 DL-DGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp ET-TSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred eC-CCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 54 344444444321 456888999999876654322 2 45555543
No 208
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.51 E-value=7.8e-15 Score=113.05 Aligned_cols=52 Identities=23% Similarity=0.422 Sum_probs=49.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+||++++++||++| |||+|||.+|++|+..+++||+|+++|+.++|++.
T Consensus 30 ~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 30 FRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp TBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred hCCcCccCcccCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 57999999999999998 99999999999999999999999999999999987
No 209
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.51 E-value=1.8e-14 Score=110.61 Aligned_cols=52 Identities=33% Similarity=0.449 Sum_probs=49.5
Q ss_pred CcccccCCCCCCceEeCCCC-eeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSG-LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
++|+||++++++||++| || |+|||.+|++|+.++++||+|+++|+.++|++.
T Consensus 23 ~~CpI~~~~m~dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 23 FLDPIMSTLMCDPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp TBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred cCCcCccccccCCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 57999999999999997 78 999999999999999999999999999999987
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=3.8e-11 Score=119.39 Aligned_cols=239 Identities=10% Similarity=0.088 Sum_probs=160.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCC--cEEEEeCCCCCcee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYD 301 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~ 301 (526)
.....++|+++++++++...++.|++||..++.......... ... ++|+++++.|+++..++ .|.+|+........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999988888878999999998877665554432 334 99999999999888766 78888876542211
Q ss_pred eeEeccc-CccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC--eeEEEEcc-CCcEEEEEeC
Q 009763 302 CKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG--YTSAAFHP-DGLILGTGTS 377 (526)
Q Consensus 302 ~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~-~~~~l~~g~~ 377 (526)
.+..+.. +...+.+++++|++..|+.+..++.|..||..++.... +......+.... ...++|+| ++.++++-..
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 2212222 45668899999965556667778999999998776432 211101111111 23999999 5677777777
Q ss_pred CCcEEEEECCCCceeeEecCC---------------CCCeEEEEECCCCCEEEEEe-CCc-EEEEEcCCCccceEEecC-
Q 009763 378 EALVKIWDVKSQANVAKFDGH---------------VGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESS- 439 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~- 439 (526)
++.|+.||.... +..+.++ -.....++|+++|+++++-+ .+. |+.||+.++... .+...
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~ 364 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQV 364 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCC
Confidence 889999997643 2233222 23578999999999666665 555 999998776543 22221
Q ss_pred C------------CCCCeeEEEEcCCCCEEEEEeCCeEEEE
Q 009763 440 D------------SETPTNSVDFDHSGSYLAVASADIRVYQ 468 (526)
Q Consensus 440 ~------------~~~~i~~i~~s~~~~~l~~~~~di~v~~ 468 (526)
. .-.....++++++|.++++-..+-+|+.
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 0 0135789999999877766665544443
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=7.8e-12 Score=121.24 Aligned_cols=254 Identities=13% Similarity=0.096 Sum_probs=171.6
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEecccc-------cceeEEEEecCCCEEEEEeC--CCc
Q 009763 228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHS-------KKVTSVKFVTEGDLFLTGSA--DKT 288 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~----------~dg~v~vwd~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~l~s~s~--dg~ 288 (526)
.+.++|+|++++++. .++.|.+||..+++.+..+.... .....+.|+|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999887765 36789999999999988875321 24567999999999888864 689
Q ss_pred EEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCC-CeEEEEeecCCCCCCCCCe-eEEEEc
Q 009763 289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGY-TSAAFH 366 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v-~~~~~~ 366 (526)
|.++|+.+. +.+.++.-. + . ...+....+.+++.+.||.+.+.++.+ ++...... ........++ ....|.
T Consensus 162 VsVID~~t~---~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 162 VGVVDLEGK---AFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEETTTT---EEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEE
T ss_pred EEEEECCCC---cEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceeccccccccccceeE
Confidence 999999986 555555321 1 1 222333456788889999999999986 55433221 1111111122 123554
Q ss_pred -cCCcEEEEEeCCCcEEEEECCCCc--eeeEec---------C-CCCCeEEEEECCCCCEEEEEeC----------Cc-E
Q 009763 367 -PDGLILGTGTSEALVKIWDVKSQA--NVAKFD---------G-HVGAVTAISFSENGYYLATAAH----------DG-V 422 (526)
Q Consensus 367 -~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~---------~-~~~~i~~l~~s~~~~~l~~~~~----------d~-i 422 (526)
++|++++ .+.+|.|+++|+.++. ....+. + ..+....+++++++..+++... .. |
T Consensus 235 ~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 235 QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 6786665 4458999999997654 222222 0 1223445778999888887642 13 9
Q ss_pred EEEEcCCCccceEEecCCCCCCeeEEEEcCCCC-EEEEEeC-C--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
.++|+.+.+.+..+... ..+..+.|+++++ +|++++. + +.|+|. .+.+.+.++... +..+.+.+++
T Consensus 314 ~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~----~t~k~~~~i~~~---~~p~~l~~s~ 383 (386)
T 3sjl_D 314 VVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDA----ESGEELRSVNQL---GHGPQVITTA 383 (386)
T ss_dssp EEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEET----TTCCEEEEECCC---CSSCCEEEEC
T ss_pred EEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEEC----CCCcEEEEecCC---CCCceeEECC
Confidence 99999999999998873 4788999999997 7777654 2 888886 556677776653 3345556665
Q ss_pred C
Q 009763 499 D 499 (526)
Q Consensus 499 ~ 499 (526)
|
T Consensus 384 d 384 (386)
T 3sjl_D 384 D 384 (386)
T ss_dssp C
T ss_pred c
Confidence 5
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=2.2e-10 Score=108.48 Aligned_cols=233 Identities=10% Similarity=0.039 Sum_probs=164.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-EecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
...+.++++.++++++++...++.|..||.. ++... .+......+.++++.+++.++++...++.|..||.. +. ..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~ 137 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IY 137 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EE
Confidence 3578899999999988877768889999988 65532 223344678999999999988877778899999876 32 11
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
...+......+.++++.++++++++...++.|..||. ++.... +.. ......+..++++++|.++++....+.|
T Consensus 138 -~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i 211 (300)
T 2qc5_A 138 -EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKI 211 (300)
T ss_dssp -EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEE
Confidence 1223334567899999999997776666789999998 555443 321 1223468899999999888777677889
Q ss_pred EEEECCCCceeeE-ecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEE
Q 009763 382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459 (526)
Q Consensus 382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 459 (526)
.+||. +++.... +......+.+++++++|++.++...++ |..||. ++.. ..+........+.++.++++|.+.++
T Consensus 212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~ 288 (300)
T 2qc5_A 212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGKDGSVWFA 288 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCCCCCEEEE
Confidence 99998 4443332 233456789999999998666655544 999998 3332 33433322456889999999987666
Q ss_pred EeCCeEEEEE
Q 009763 460 ASADIRVYQV 469 (526)
Q Consensus 460 ~~~di~v~~~ 469 (526)
.. + .|+.+
T Consensus 289 ~~-~-~i~~~ 296 (300)
T 2qc5_A 289 LK-C-KIGKL 296 (300)
T ss_dssp CS-S-EEEEE
T ss_pred cc-C-ceEEe
Confidence 55 5 55554
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=4.1e-11 Score=113.93 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=152.9
Q ss_pred CeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 225 GIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 225 ~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
-.-+..|+++ +.++++...++.|..||..++... .+. ....+.+++++++|+++++ . ++.|.+||..++. ...+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~-~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS-AVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE-EEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc-EEEE
Confidence 4568889985 456677777899999999877653 332 3567999999999995554 4 5679999987642 2222
Q ss_pred Eeccc--CccceEEEEEecCCCEEEEEEC-----------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc
Q 009763 304 HTLKD--HTAEVQAVTVHATNKYFVTASL-----------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (526)
Q Consensus 304 ~~~~~--h~~~v~~l~~~p~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 370 (526)
..... ....++.++++|+|+++++... .+.|..+|.. +........ ......++|+|+++
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~------~~~pngi~~spdg~ 161 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ------VDISNGLDWSLDHK 161 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE------ESBEEEEEECTTSC
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec------cccccceEEcCCCC
Confidence 22211 2345889999999997765432 1344444443 333222211 13467899999998
Q ss_pred EEE-EEeCCCcEEEEEC--CCCce-----eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCC
Q 009763 371 ILG-TGTSEALVKIWDV--KSQAN-----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS 441 (526)
Q Consensus 371 ~l~-~g~~dg~i~iwd~--~~~~~-----~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~ 441 (526)
.|+ +.+.++.|.+||+ .++.. ...+..+.+.+..++++++|++.++...++ |..||..+++.+..+...
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-- 239 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-- 239 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS--
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC--
Confidence 665 4555788999997 44432 222333345688999999998777776666 999999989888888765
Q ss_pred CCCeeEEEEc-CCCCEEEEEeC
Q 009763 442 ETPTNSVDFD-HSGSYLAVASA 462 (526)
Q Consensus 442 ~~~i~~i~~s-~~~~~l~~~~~ 462 (526)
...+++++|. |+++.|++++.
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCceEEEEeCCCCCEEEEEcC
Confidence 4578999998 88888777654
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=3.1e-11 Score=115.23 Aligned_cols=233 Identities=15% Similarity=0.111 Sum_probs=153.3
Q ss_pred ecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 009763 261 LSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (526)
Q Consensus 261 ~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (526)
+..+........|+++++ ++++...++.|..|+... . ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~----~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T----VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C----EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C----EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 333445567899999998 667777889999998732 1 2333445667899999999997766556689999998
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE----EeC-------------CCcEEEEECCCCceeeEecCCCCCe
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GTS-------------EALVKIWDVKSQANVAKFDGHVGAV 402 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~i 402 (526)
. +......... .......+..+.++++|+++++ |.. .+.|..||..+++..... .....
T Consensus 115 ~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 115 D-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp T-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred C-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 6 5432222111 1111235678999999998886 432 256888887666544333 33467
Q ss_pred EEEEECCCCCEEEEEeCC------c-EEEEEcCCCcc--ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecc
Q 009763 403 TAISFSENGYYLATAAHD------G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASV 472 (526)
Q Consensus 403 ~~l~~s~~~~~l~~~~~d------~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~ 472 (526)
+.++|+|+++.|+++... + |.+||+..... ...+... ....+..+.++++|++.++. .+ +.+|+.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~--- 265 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GTGVCVFDS--- 265 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-SSEEEEECT---
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CCcEEEECC---
Confidence 889999999977776554 4 99999875431 1111111 12345678999999955544 44 666653
Q ss_pred cCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 473 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
....+..+... ..+.+++|+++++.|+.++.++..
T Consensus 266 --~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 266 --DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp --TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEE
T ss_pred --CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEE
Confidence 33444444432 257899999999989888876433
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=4.6e-11 Score=114.06 Aligned_cols=224 Identities=10% Similarity=0.083 Sum_probs=155.3
Q ss_pred CCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceee
Q 009763 224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 224 ~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.......|+++++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. +. ...
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~ 120 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHL 120 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEE
Confidence 3467889999998 6677777899999998 454 34455566778999999999977666566889999975 22 222
Q ss_pred eE-eccc-CccceEEEEEecCCCEEEE----EEC-------------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEE
Q 009763 303 KH-TLKD-HTAEVQAVTVHATNKYFVT----ASL-------------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (526)
Q Consensus 303 ~~-~~~~-h~~~v~~l~~~p~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (526)
+. ...+ ....++.++++|+|+++++ |.. .+.|..||..+++..... .. .....+
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~------~~p~gl 193 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL------DHPNGL 193 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE------SSEEEE
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC------CCCcce
Confidence 21 1111 1234678999999998886 321 256888888666543322 11 246789
Q ss_pred EEccCCcEEEEEeCC------CcEEEEECCCCce--eeEe-cCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccce
Q 009763 364 AFHPDGLILGTGTSE------ALVKIWDVKSQAN--VAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR 434 (526)
Q Consensus 364 ~~~~~~~~l~~g~~d------g~i~iwd~~~~~~--~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~ 434 (526)
+|+||++.|+++... +.|.+||+..+.. ...+ ....+....++++++|++. +++.++|.+||. .++.+.
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~gv~~~~~-~g~~~~ 271 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGTGVCVFDS-DGQLLG 271 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSSEEEEECT-TSCEEE
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCCcEEEECC-CCCEEE
Confidence 999999988777665 6899999875431 1111 1123456678999999844 444667999998 566666
Q ss_pred EEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 435 SFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
.+... ..+.+++|+++++.|++++.+
T Consensus 272 ~~~~~---~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 272 HIPTP---GTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EEECS---SCCCEEEECTTSCEEEEEETT
T ss_pred EEECC---CceeEEEEeCCCCEEEEEcCC
Confidence 66654 258899999999988888776
No 216
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.43 E-value=7.1e-14 Score=118.49 Aligned_cols=52 Identities=37% Similarity=0.629 Sum_probs=49.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~ 53 (526)
++|+||+++|++||++| |||+|||.+|++|+..+|. ||+|+++|+.++|+|.
T Consensus 107 f~CPI~~elm~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 107 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred hcccCccccCCCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 57999999999999996 9999999999999998875 9999999999999987
No 217
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=7.2e-14 Score=106.89 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=48.5
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC------CCCCCCCC---CCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG------KCPVTGEP---LTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~~---~~~~~~~~~ 53 (526)
+.|+||++++++||++|+|||+|||.+|++|+.+++ +||+||.+ |+.++|++-
T Consensus 8 ~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp CBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred eECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 579999999999999988999999999999999862 89998877 999999876
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.43 E-value=7e-10 Score=108.73 Aligned_cols=238 Identities=10% Similarity=-0.011 Sum_probs=160.1
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccc-------ccceeEEEEecCCCEEEEEeC--CCc
Q 009763 228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT 288 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~----------~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--dg~ 288 (526)
.+.++|+|++++++. .++.|.+||..+++.+..+... ......+.|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999988885 3678999999988887766432 123458999999999998874 578
Q ss_pred EEEEeCCCCCceeeeEe-cccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC-eeEEEE
Q 009763 289 VRVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG-YTSAAF 365 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 365 (526)
|.++| .++ +.+.. +.. .. ++.+.|.+ ..+++.+.||.+.++|. +++...............+ .....+
T Consensus 150 v~viD-~t~---~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~ 220 (373)
T 2mad_H 150 VGLVV-QGG---SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred EEEEE-CCC---CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee
Confidence 99999 776 44444 432 11 24455555 45677788999999999 8776643321000000111 123455
Q ss_pred ccCCcEEEEEeCCCcEEEEECCCCc--eeeEecC----------CCCCeEEEEECCCCCEEEEEeC----------Cc-E
Q 009763 366 HPDGLILGTGTSEALVKIWDVKSQA--NVAKFDG----------HVGAVTAISFSENGYYLATAAH----------DG-V 422 (526)
Q Consensus 366 ~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~----------~~~~i~~l~~s~~~~~l~~~~~----------d~-i 422 (526)
.+++..++..+..+.+.+.|+..+. .+..+.. .......+.++|++..++++.. .+ |
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 6655444444467899999997553 2222211 1123445789999888877643 23 9
Q ss_pred EEEEcCCCccceEEecCCCCCCeeEEEEcCCCC-EEEEEeC-C--eEEEEEecccCcceeeee
Q 009763 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKT 481 (526)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~ 481 (526)
.++|+.+++.+..+.. ......+.|+|+|+ +++++.. + +.|||. .+++.+..
T Consensus 301 ~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~----~t~~vv~~ 356 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA----GAGDQDQS 356 (373)
T ss_pred EEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC----CCCCEEee
Confidence 9999999999888866 34689999999999 6777653 3 888887 44555555
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=4.3e-10 Score=108.33 Aligned_cols=222 Identities=12% Similarity=0.065 Sum_probs=150.0
Q ss_pred CeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 225 GIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 225 ~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
-..+..|++++ .++++...++.|..||..+++.. .+. ....+.++.|+++|+++++. .+ .|.+||..++. ...+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~-~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV-LTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-EEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-EEEE
Confidence 35678899975 46667767889999999876543 232 34579999999999877654 44 49999987642 2222
Q ss_pred Eeccc--CccceEEEEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE
Q 009763 304 HTLKD--HTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (526)
Q Consensus 304 ~~~~~--h~~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 375 (526)
..... ....++.+.++|+|+++++... .+.|..++ +++....... ......++|+|+++.++.+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~------~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD------ISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE------ESSEEEEEECTTSCEEEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC------CcccCCeEEcCCCCEEEEE
Confidence 22211 1246889999999997765542 24566666 4543332211 1246789999999866554
Q ss_pred -eCCCcEEEEECC--CC-ce-----eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCe
Q 009763 376 -TSEALVKIWDVK--SQ-AN-----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445 (526)
Q Consensus 376 -~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 445 (526)
+.++.|.+||+. ++ .. ...+......+..++++++|.+.++...++ |.+||. +++.+..+... ...+
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~~~ 273 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQT 273 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CCCc
Confidence 456899999986 55 31 222333345678899999998777765554 999998 56666666654 4468
Q ss_pred eEEEEc-CCCCEEEEEeC
Q 009763 446 NSVDFD-HSGSYLAVASA 462 (526)
Q Consensus 446 ~~i~~s-~~~~~l~~~~~ 462 (526)
.+++|+ +++..|++++.
T Consensus 274 ~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEESTTSCEEEEEEB
T ss_pred EEEEEecCCCCEEEEEec
Confidence 999998 88887766554
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=2.4e-10 Score=113.61 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=153.1
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC--eEEEEeCCCCe
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--TWCFYDLSSGI 343 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~i~iwd~~~~~ 343 (526)
.....++|+++++++++...++.|++||..++ ........ ..... ++|+++++.|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 35789999999998888777899999999864 22222222 22334 99999999999988866 79999987665
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeE----ecCCCCCe--EEEEECCC-CCEEEE
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK----FDGHVGAV--TAISFSEN-GYYLAT 416 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~l~~s~~-~~~l~~ 416 (526)
....+... .......+.+++++|++..|+++..++.|+.||..++..... ..+....- ..++|+|+ +.++++
T Consensus 206 ~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 206 APTRIGQL-GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eeEEeeec-cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 43333111 011234678899999444445577788999999987653322 22222222 39999996 554444
Q ss_pred EeCCc-EEEEEcCCCccceEEecCC-------------CCCCeeEEEEcCCCCEEEEEe-CC--eEEEEEecccCcceee
Q 009763 417 AAHDG-VKLWDLRKLKNFRSFESSD-------------SETPTNSVDFDHSGSYLAVAS-AD--IRVYQVASVKADWNCI 479 (526)
Q Consensus 417 ~~~d~-i~iwd~~~~~~~~~~~~~~-------------~~~~i~~i~~s~~~~~l~~~~-~d--i~v~~~~~~~~~~~~~ 479 (526)
....+ |+.||.... ...+.... .-.....++++++|.++++-. .+ |+.|++. ... +
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~----~G~-v 357 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL----DGY-V 357 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT----TTE-E
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC----CCE-E
Confidence 44445 999987643 22222211 013478999999999666655 45 5555531 122 1
Q ss_pred eeecCC-------------CCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 480 KTFPDL-------------SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 480 ~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
..+.++ ........++++++|.++++-..++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 211111 01245889999999888888778889988875
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=5.2e-10 Score=106.26 Aligned_cols=231 Identities=14% Similarity=0.173 Sum_probs=146.1
Q ss_pred cccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC
Q 009763 264 HSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 342 (526)
Q Consensus 264 h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~ 342 (526)
+..-.-+..|+++ +.++++...++.|..||..++. . ..+ .+...+.+++++++|+++++ . ++.|.+||..++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---V-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---E-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---E-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 3344568899995 4566676778999999987742 1 222 24567999999999995554 3 578999999988
Q ss_pred eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC---------CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCE
Q 009763 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (526)
+........ .......+..++++|+|+++++.... ..-.+|.+........+.......+.++|+|+++.
T Consensus 84 ~~~~~~~~~-~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 84 SAVVLATVD-NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEEECC-TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred cEEEEEecC-CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 754433211 11122457889999999977654321 22344444322222223223345789999999987
Q ss_pred EEEEeC-Cc-EEEEEc--CCCccc--eEEe-cCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecC
Q 009763 414 LATAAH-DG-VKLWDL--RKLKNF--RSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 414 l~~~~~-d~-i~iwd~--~~~~~~--~~~~-~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~ 484 (526)
|+.+.. .+ |.+||+ .++... ..+. .......+..++++++|.+.++.... +.+|+. .+.+.+..+..
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~----~tG~~~~~i~~ 238 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP----VTGKRLQTVKL 238 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT----TTCCEEEEEEC
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC----CCceEEEEEEC
Confidence 766554 34 999987 344321 1121 11113467889999999877777655 555553 22445555544
Q ss_pred CCCCcceEEEEEc-CCCCEEEEEeC
Q 009763 485 LSGTGKATCVKFG-PDAKYIAVGSM 508 (526)
Q Consensus 485 ~~~~~~v~~~~~s-~~~~~l~s~~~ 508 (526)
. ...+++++|+ |+++.|++++.
T Consensus 239 p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 P--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp S--SSBEEEEEEESGGGCEEEEEEB
T ss_pred C--CCCceEEEEeCCCCCEEEEEcC
Confidence 3 4578999998 88887766553
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=1.5e-11 Score=119.71 Aligned_cols=175 Identities=16% Similarity=0.082 Sum_probs=130.1
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC--------ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEe
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd 338 (526)
.++.+++++...++++|+.++ +.+|++.... ..+..... .+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999985 6669854321 01221222 3556 999999 89999998 889999999
Q ss_pred CCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe
Q 009763 339 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
+.+........ .+...+.++.+.+.. +++++.||.|.+||+.++.... +...|+|++|+|+| ++.|.
T Consensus 113 v~sl~~~~~~~-----~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 113 LEELSEFRTVT-----SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp SSSTTCEEEEE-----ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred chhhhccCccc-----eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 98766444443 223457777666542 8888999999999999877643 34589999999999 66777
Q ss_pred CCc-EEEEEcCCCcc--ceEEec----C---CCCCCeeEEEEcCCCCEEEEE
Q 009763 419 HDG-VKLWDLRKLKN--FRSFES----S---DSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 419 ~d~-i~iwd~~~~~~--~~~~~~----~---~~~~~i~~i~~s~~~~~l~~~ 460 (526)
.|+ +++|+...... ...+.. . .+...|.++.|.+++.++++-
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 887 99998877664 444521 1 236789999999999999874
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.36 E-value=1.2e-10 Score=124.29 Aligned_cols=241 Identities=14% Similarity=0.100 Sum_probs=154.6
Q ss_pred cCCCCCeEEEEecCCCCEEEEEe-----CCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCc------
Q 009763 220 KTSKPGIVSLDIHYSKDVIATGG-----VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT------ 288 (526)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~t~~-----~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~------ 288 (526)
..|...+..++|||||++||.+. ....|++||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 34555788999999999888543 2357999999999865531 111123678999 9999988887743
Q ss_pred -------EEEEeCCCCCc-eeeeEeccc-CccceEEEEEecCCCEEEEEEC----CCeEEEEeCCCCe-EEEEeecCCCC
Q 009763 289 -------VRVWQGSEDGN-YDCKHTLKD-HTAEVQAVTVHATNKYFVTASL----DNTWCFYDLSSGI-CLTQVSDAGTD 354 (526)
Q Consensus 289 -------i~iwd~~~~~~-~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~ 354 (526)
|++|++.+... -..+..... |...+..+.|+|+|++|+.... +..|.++|+.++. ....+..
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~---- 278 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG---- 278 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC----
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC----
Confidence 99999877532 123333334 5556788999999998765443 2589999998763 2333331
Q ss_pred CCCCCeeEEEEccCCc-EEEEEeCC---CcEEEEECCCCce--eeEecCCCCCeEEEEECCCCCEEEEEeC-Cc---EEE
Q 009763 355 GRPEGYTSAAFHPDGL-ILGTGTSE---ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAH-DG---VKL 424 (526)
Q Consensus 355 ~~~~~v~~~~~~~~~~-~l~~g~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~---i~i 424 (526)
+....... ++++|. +++....+ +.|..+|+.++.. ...+..+...+. .|++++.+|+.... ++ |++
T Consensus 279 -~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 279 -DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp -SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred -CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 12233333 556554 44444443 5799999987654 345555555554 88888887776654 43 899
Q ss_pred EEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEEecc
Q 009763 425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASV 472 (526)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~~~ 472 (526)
||+... ....+.... ...+..+.+++++..++....+ ..+|.++..
T Consensus 355 ~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 355 FDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp ECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 998744 334443321 3456677788888766655433 566666543
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.34 E-value=2.3e-10 Score=112.98 Aligned_cols=240 Identities=11% Similarity=0.059 Sum_probs=165.9
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccc-------ccceeEEEEecCCCEEEEEeC--CCc
Q 009763 228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT 288 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~----------~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--dg~ 288 (526)
.+.++|++++++++. .++.|.++|..+++.+..+.-. ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999887775 3678999999999998877521 233567899999999998874 578
Q ss_pred EEEEeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC-eeEEEEc
Q 009763 289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG-YTSAAFH 366 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~~ 366 (526)
|.+.|..+. +.+..+.--. . ....|++ ..+++.+.||.+.+.++.+++...... ........+ ...+.+.
T Consensus 202 VsVID~~t~---kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 202 VGVVDLEGK---TFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEETTTT---EEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTSCBCSCCEEC
T ss_pred EEEEECCCC---eEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCCceeeEeeec
Confidence 999999886 4555544211 1 2334433 667778889999988986665543221 000000111 2235678
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCcee--eEecC----------CCCCeEEEEECCCCCEEEEEeC----------Cc-EE
Q 009763 367 PDGLILGTGTSEALVKIWDVKSQANV--AKFDG----------HVGAVTAISFSENGYYLATAAH----------DG-VK 423 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~----------~~~~i~~l~~s~~~~~l~~~~~----------d~-i~ 423 (526)
+++..++.....+.|.+.|+...... ..+.. .......++++|++..+++... .+ |.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 88887777778899999998755421 11110 0112223689999887777642 23 99
Q ss_pred EEEcCCCccceEEecCCCCCCeeEEEEcCCCC-EEEEEeC-C--eEEEEEecccCcceeeeee
Q 009763 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTF 482 (526)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~~ 482 (526)
++|+.+.+.+..+... .....+.|+|+|+ ++++... + +.|+|. .+++.+.++
T Consensus 354 VID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~----~t~kvv~tI 409 (426)
T 3c75_H 354 VLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDA----ATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEET----TTCCEEEEE
T ss_pred EEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEEC----CCCCEEEEe
Confidence 9999999999998763 3588999999999 8888874 3 999997 566777665
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=2.2e-09 Score=103.38 Aligned_cols=223 Identities=14% Similarity=0.097 Sum_probs=142.4
Q ss_pred eeEEEEecCC-CEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE
Q 009763 268 VTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 346 (526)
Q Consensus 268 V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~ 346 (526)
..+..|+|++ .++++...++.|..||..++ .. ..+. +...+.++.|+++|+++++. . ..|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG---RK-TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EE-EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC---cE-EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 4567899974 45666667889999998764 22 2222 34679999999999877754 4 459999998887543
Q ss_pred EeecCCCCCCCCCeeEEEEccCCcEEEEEeC------CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC-
Q 009763 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH- 419 (526)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~- 419 (526)
..... .......+..+.++|+|+++++... .+.|..+| +++.. .+.........++|+|+|+.|+.+..
T Consensus 124 ~~~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELE-SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSS-TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCC-CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 32211 1111245889999999987765532 24566666 44433 33223345789999999987766654
Q ss_pred Cc-EEEEEcC--CC-ccc--eEEe-cCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcc
Q 009763 420 DG-VKLWDLR--KL-KNF--RSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK 490 (526)
Q Consensus 420 d~-i~iwd~~--~~-~~~--~~~~-~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~ 490 (526)
++ |.+||+. ++ ... ..+. .......+..++++++|.+.++...+ +.+|+. ....+..+... ...
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-----~g~~~~~i~~~--~~~ 272 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-----DGNHIARYEVP--GKQ 272 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-----TCCEEEEEECS--CSB
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-----CCCEEEEEECC--CCC
Confidence 34 9999986 44 321 2221 11113456789999999877776544 555543 22334444332 446
Q ss_pred eEEEEEc-CCCCEEEEEeC
Q 009763 491 ATCVKFG-PDAKYIAVGSM 508 (526)
Q Consensus 491 v~~~~~s-~~~~~l~s~~~ 508 (526)
+++++|+ ++++.|++++.
T Consensus 273 ~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 273 TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEEESTTSCEEEEEEB
T ss_pred cEEEEEecCCCCEEEEEec
Confidence 8999998 88887765543
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.31 E-value=3.8e-09 Score=103.11 Aligned_cols=229 Identities=10% Similarity=0.065 Sum_probs=152.7
Q ss_pred cCCCEEEE-EeCCCcEEEEeCCCC-CceeeeEecc------c-CccceEEEEEecCCCEEEEEECC------CeEEEEeC
Q 009763 275 TEGDLFLT-GSADKTVRVWQGSED-GNYDCKHTLK------D-HTAEVQAVTVHATNKYFVTASLD------NTWCFYDL 339 (526)
Q Consensus 275 ~~~~~l~s-~s~dg~i~iwd~~~~-~~~~~~~~~~------~-h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~ 339 (526)
.++++|+. +..++.|.|+|+.+. ...+...++. . .......+.+.|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67776555 557889999998643 2334445442 1 11245677888999 77776655 78999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-------------------CCCcEEEEECCCCceeeEecCC-C
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------------------SEALVKIWDVKSQANVAKFDGH-V 399 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------------------~dg~i~iwd~~~~~~~~~~~~~-~ 399 (526)
.+++.+..+.... ....--+.+-|+|+++.+++.. .+..|.+||+.+++.+.++... .
T Consensus 172 ~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YSFEPLGKWEIDR--GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TTCCEEEECCSBC--TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CCCeEEEEEccCC--CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 9999998886321 1112234688899999888874 3689999999998888887643 1
Q ss_pred -CCeEEEEE--CCCCCEEEEEeC-----C-c-EEEEEcCCCcc--ceEEecCCC----------------CCCeeEEEEc
Q 009763 400 -GAVTAISF--SENGYYLATAAH-----D-G-VKLWDLRKLKN--FRSFESSDS----------------ETPTNSVDFD 451 (526)
Q Consensus 400 -~~i~~l~~--s~~~~~l~~~~~-----d-~-i~iwd~~~~~~--~~~~~~~~~----------------~~~i~~i~~s 451 (526)
.....+.| +|+++++++++. . + |.+|....+.. ...+..... ......|.++
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23455656 999999888876 4 3 76665543321 111111100 1357889999
Q ss_pred CCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCC------------CCcceEEEEEcCCCCEEEEEe
Q 009763 452 HSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLS------------GTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 452 ~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~s~~ 507 (526)
+||++|+++... |.+|++... .....+..+.... ..+....+.++|||++|++++
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999876 999988422 2344444443210 012357899999999999998
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=3.4e-10 Score=120.79 Aligned_cols=242 Identities=14% Similarity=0.125 Sum_probs=152.2
Q ss_pred ccccceeEEEEecCCCEEEEE-----eCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCe----
Q 009763 263 GHSKKVTSVKFVTEGDLFLTG-----SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT---- 333 (526)
Q Consensus 263 ~h~~~V~~l~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~---- 333 (526)
+|...+..++|+|||++|+-+ +.+..|++||+.++. .+.. ..+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCcc-ccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 355578889999999988743 233579999999863 2221 1111113567899 9999999888743
Q ss_pred ---------EEEEeCCCCeE--EEEeecCCCCC-CCCCeeEEEEccCCcEEEEEeC----CCcEEEEECCCCc-eeeEec
Q 009763 334 ---------WCFYDLSSGIC--LTQVSDAGTDG-RPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQA-NVAKFD 396 (526)
Q Consensus 334 ---------i~iwd~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~-~~~~~~ 396 (526)
|++|++.++.. ...+.. .. +...+..+.|+|||++|+.... ++.|+++|+.++. ....+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 99999987653 222221 12 3345778999999998765432 3589999998763 345555
Q ss_pred CCCCCeEEEEECCCCCEEE-EEeCC---c-EEEEEcCCCcc--ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEE
Q 009763 397 GHVGAVTAISFSENGYYLA-TAAHD---G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRV 466 (526)
Q Consensus 397 ~~~~~i~~l~~s~~~~~l~-~~~~d---~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v 466 (526)
.+....... |+++|..|+ .+..+ + |..+|+.++.. ...+..+. ..+. .|++++++|+....+ -+|
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEE
Confidence 555555555 555555544 44433 3 89999988654 33444432 2333 888999888876543 234
Q ss_pred EEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC----CcEEEeeCCCCC
Q 009763 467 YQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD----RNLRVFGLPGND 521 (526)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~l~~~~ 521 (526)
+.++... .....+... ..+.+..+.+++++..|+....+ +.|..||+.+++
T Consensus 353 ~~~d~~g---~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYEG---KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTTS---CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCC---CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4433221 122222211 24567778888888877665544 789999987653
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=6.2e-10 Score=108.08 Aligned_cols=234 Identities=8% Similarity=0.053 Sum_probs=150.5
Q ss_pred CCeEEEEecCCCCEEEEEe--CCCcEEEEeCCCCcEEEEec-------ccccceeEEEEecCCCEEEEEeC-----CCcE
Q 009763 224 PGIVSLDIHYSKDVIATGG--VDTNAVLFDRPSGQIVTTLS-------GHSKKVTSVKFVTEGDLFLTGSA-----DKTV 289 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~--~dg~v~vwd~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~-----dg~i 289 (526)
.....++++++|+++++.. .++.+.||.+.+++. ..+. +|...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5788999999999988864 234344554445543 3222 34567999999999886665443 5789
Q ss_pred EEEeCCCCCceeeeEecc------cCccceEEEEEecCCCEE-EEEE---CCCeEEEEeCCCCeEEEEeecC-CCC----
Q 009763 290 RVWQGSEDGNYDCKHTLK------DHTAEVQAVTVHATNKYF-VTAS---LDNTWCFYDLSSGICLTQVSDA-GTD---- 354 (526)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~l-~s~s---~dg~i~iwd~~~~~~~~~~~~~-~~~---- 354 (526)
.+||+.++ +.+..+. .+...+..+++++++..+ ++.. .++.|.+||+.+++....+... ...
T Consensus 96 ~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 96 VAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred EEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 99999875 3333332 123457899999865554 4444 5789999999988765554210 000
Q ss_pred -----C--------------CCCCeeEEEEccCCcEEEEEeCCC-cEEEEECC---CCc-----eee--EecCCCCCeEE
Q 009763 355 -----G--------------RPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVK---SQA-----NVA--KFDGHVGAVTA 404 (526)
Q Consensus 355 -----~--------------~~~~v~~~~~~~~~~~l~~g~~dg-~i~iwd~~---~~~-----~~~--~~~~~~~~i~~ 404 (526)
+ ....+..++|+|+++.|+++..++ .+..++.. .+. ... ...++.+....
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 0 012468899999998888877666 55555432 111 000 11123345678
Q ss_pred EEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeC
Q 009763 405 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 405 l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
++++++|.++++...++ |.+||..+++...... ......+..++|+++|.++++.+.
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSCEEEEECC
T ss_pred EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCcEEEEeCc
Confidence 99999998888877776 9999985555322222 212346889999999887777654
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=1.7e-10 Score=112.00 Aligned_cols=248 Identities=10% Similarity=-0.012 Sum_probs=160.9
Q ss_pred cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe----------CCCcEEEEeCCCCCceeeeEecccC------
Q 009763 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKDH------ 309 (526)
Q Consensus 246 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~h------ 309 (526)
.|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+. +.+..+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---CEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---CEEEEEECCCccccc
Confidence 7889999999999998765555 799999999888876 3789999999987 455555322
Q ss_pred -ccceEEEEEecCCCEEEEEEC--CCeEEE--EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-cEEEEEeCCCcEEE
Q 009763 310 -TAEVQAVTVHATNKYFVTASL--DNTWCF--YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKI 383 (526)
Q Consensus 310 -~~~v~~l~~~p~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~i 383 (526)
......+.++|+|++++++.. +..+.+ +|..+ +..+... + . ..+.|++ ..+++.+.||.+.+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~---~----~--~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA---S----C--FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS---S----C--CCCEEEETTEEECCCCTTSCEE
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC---C----c--eEEccCCCeEEEEEcCCCCEEE
Confidence 124568999999999998875 467888 99877 4444321 1 1 1233433 34555667888888
Q ss_pred EECCC-----Cceee----EecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCc--cceEEecCC--------CCCC
Q 009763 384 WDVKS-----QANVA----KFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK--NFRSFESSD--------SETP 444 (526)
Q Consensus 384 wd~~~-----~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~--~~~~~~~~~--------~~~~ 444 (526)
.|+.+ ++... .+.....+. . ++++..++..+.+.|.+.|+.... .+..+.... ....
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 89876 33221 111122333 3 444444443334449999986532 222221110 0111
Q ss_pred eeEEEEcCCCCEEEEEe----C-------CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCE-EEEEe-CCCc
Q 009763 445 TNSVDFDHSGSYLAVAS----A-------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY-IAVGS-MDRN 511 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~----~-------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~-~dg~ 511 (526)
...+.|+|+++.++++. . .+.++|. ...+.+..+.. .....+++|++||+. +++.. .++.
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~----~t~~vv~~i~v---g~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA----SVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES----SSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC----CCCeEEEEEEC---CCCcceEEECCCCCEEEEEccCCCCe
Confidence 22378999999888653 2 2668887 45556666543 336789999999984 55566 5999
Q ss_pred EEEeeCCCCC
Q 009763 512 LRVFGLPGND 521 (526)
Q Consensus 512 v~iw~l~~~~ 521 (526)
|.++|+.+.+
T Consensus 339 VsVID~~t~k 348 (368)
T 1mda_H 339 LDIYDAASDQ 348 (368)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCc
Confidence 9999997654
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=1.1e-09 Score=106.19 Aligned_cols=241 Identities=11% Similarity=0.029 Sum_probs=150.0
Q ss_pred cceeEEEEecCCCEEEEEe--CCCcEEEEeCCCCCceeee----EecccCccceEEEEEecCCCEEEEEEC-----CCeE
Q 009763 266 KKVTSVKFVTEGDLFLTGS--ADKTVRVWQGSEDGNYDCK----HTLKDHTAEVQAVTVHATNKYFVTASL-----DNTW 334 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~----~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i 334 (526)
..+..++++++|+++++.. .++.++||.+.+ +..... .....|...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5789999999999888864 234355665543 211100 011235568999999999876665433 5799
Q ss_pred EEEeCCCCeEEEEeecCCC-CCCCCCeeEEEEccCC-cEEEEEe---CCCcEEEEECCCCceeeEecCC-----------
Q 009763 335 CFYDLSSGICLTQVSDAGT-DGRPEGYTSAAFHPDG-LILGTGT---SEALVKIWDVKSQANVAKFDGH----------- 398 (526)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~----------- 398 (526)
.+||+.+++.+..+..... ..+...+..+++++++ .++++.. .++.|.+||+.+++....+.+|
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999999987776653211 1223456899999864 4445544 5789999999887765544331
Q ss_pred ------------------CCCeEEEEECCCCCEEEEEeCCc--EEEEEcC---CCc-----cceEEecCCCCCCeeEEEE
Q 009763 399 ------------------VGAVTAISFSENGYYLATAAHDG--VKLWDLR---KLK-----NFRSFESSDSETPTNSVDF 450 (526)
Q Consensus 399 ------------------~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~---~~~-----~~~~~~~~~~~~~i~~i~~ 450 (526)
...+..++|+|+|+.|+.+...+ +..++.. .+. ....+...........+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 02368899999999888887765 5555532 111 0111110001235667999
Q ss_pred cCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 451 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 451 s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
+++|.++++...+ |.+|+... .....+.. . .....+.+++|+++++++++.+..+.+
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~--G~~~~~~~--~-~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSAD--RAYKLLVT--D-EKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTT--TEEEEEEE--C-GGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CCCCCEEEEccCCCeEEEEECCC--CCEEEEEE--C-CceecCCeeEECCCCcEEEEeCccccc
Confidence 9999888877665 66666411 11222222 1 124468999999999888877654443
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=6.8e-09 Score=101.30 Aligned_cols=222 Identities=10% Similarity=0.098 Sum_probs=150.8
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCC----cEEEEec-------ccccceeEEEEecCCCEEEEEeCC------CcEEEEeC
Q 009763 233 YSKDVIA-TGGVDTNAVLFDRPSG----QIVTTLS-------GHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQG 294 (526)
Q Consensus 233 ~~~~~l~-t~~~dg~v~vwd~~~~----~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~d------g~i~iwd~ 294 (526)
.++++|+ .|..++.|.++|..+. +...++. .....-..+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 6677554 5666889999998755 5666663 111234567788999 77776655 78999998
Q ss_pred CCCCceeeeEeccc--Cc-cceEEEEEecCCCEEEEEE-------------------CCCeEEEEeCCCCeEEEEeecCC
Q 009763 295 SEDGNYDCKHTLKD--HT-AEVQAVTVHATNKYFVTAS-------------------LDNTWCFYDLSSGICLTQVSDAG 352 (526)
Q Consensus 295 ~~~~~~~~~~~~~~--h~-~~v~~l~~~p~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~~~ 352 (526)
.+. +.+..+.. .. ..-..+.|+|+++.++++. .+.+|.+||+.+++.+.++....
T Consensus 172 ~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 876 55665542 11 2234688899999888885 36899999999998888776321
Q ss_pred CCCCCCCeeEEEE--ccCCcEEEEEeC------CCcEEEEECCCCce--eeEe--cCC----------------CCCeEE
Q 009763 353 TDGRPEGYTSAAF--HPDGLILGTGTS------EALVKIWDVKSQAN--VAKF--DGH----------------VGAVTA 404 (526)
Q Consensus 353 ~~~~~~~v~~~~~--~~~~~~l~~g~~------dg~i~iwd~~~~~~--~~~~--~~~----------------~~~i~~ 404 (526)
.......+.| +|+++++++++. ++.|.+|....++. ...+ ... ......
T Consensus 249 ---~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 249 ---ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp ---TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred ---CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 1123445555 999998888774 56887766544321 1111 100 235788
Q ss_pred EEECCCCCEEEEEeCCc--EEEEEcCC---CccceEEecCCC------------CCCeeEEEEcCCCCEEEEEe
Q 009763 405 ISFSENGYYLATAAHDG--VKLWDLRK---LKNFRSFESSDS------------ETPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 405 l~~s~~~~~l~~~~~d~--i~iwd~~~---~~~~~~~~~~~~------------~~~i~~i~~s~~~~~l~~~~ 461 (526)
+.+++||++|.++.... |.+||+.. .+.+..+..... ......+.++|+|++|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999999999988764 99999863 344444444211 11368899999999999998
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=3.7e-09 Score=111.91 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=177.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccc-c----cceeEEEEecCCCEEEEEeC------CCcEEEEeCCCCCceee
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-S----KKVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h-~----~~V~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~ 302 (526)
.+..|++++.|+.|..+|..+|+.+..+..+ . ..+.+--.. .+..+++++. +|.|+.||..++. .
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~---~ 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGE---R 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCC---E
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCc---E
Confidence 3678888889999999999999998887754 1 122211111 2344555543 7899999998874 3
Q ss_pred eEecccCc--------------------------------cceEEEEEecCCCEEEEEECCC------------------
Q 009763 303 KHTLKDHT--------------------------------AEVQAVTVHATNKYFVTASLDN------------------ 332 (526)
Q Consensus 303 ~~~~~~h~--------------------------------~~v~~l~~~p~~~~l~s~s~dg------------------ 332 (526)
+..+.... .....++++|++..++.++.++
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 33222110 1113578889999888887664
Q ss_pred -eEEEEeCCCCeEEEEeecCCCCC----CCCCeeEEEEccCC---cEEEEEeCCCcEEEEECCCCceeeEecCCC-----
Q 009763 333 -TWCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDG---LILGTGTSEALVKIWDVKSQANVAKFDGHV----- 399 (526)
Q Consensus 333 -~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----- 399 (526)
.|..+|..+|+.+..+....... .......+....+| ..++.++.+|.|+++|..+++.+..+....
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 59999999999988876421110 01223334444577 789999999999999999999877654211
Q ss_pred -----C-Ce------------------------EEEEECCCCCEEEEEeC------------------------------
Q 009763 400 -----G-AV------------------------TAISFSENGYYLATAAH------------------------------ 419 (526)
Q Consensus 400 -----~-~i------------------------~~l~~s~~~~~l~~~~~------------------------------ 419 (526)
+ ++ ..++|+|++.++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 0 01 15688898888777543
Q ss_pred -------------Cc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 420 -------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 420 -------------d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
.+ |..||+.+++....+... .++....+...+..+++++.+ +++|+. .+.+.+..+.
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~----~tG~~lw~~~ 515 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHA----ATGEKLWEAP 515 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEEC----CCCceeeeee
Confidence 15 999999999988777653 334445566778888888777 777776 4455555554
Q ss_pred CCCCCcceEEEEEcCCCCEE-EEEeC----------------CCcEEEeeCCC
Q 009763 484 DLSGTGKATCVKFGPDAKYI-AVGSM----------------DRNLRVFGLPG 519 (526)
Q Consensus 484 ~~~~~~~v~~~~~s~~~~~l-~s~~~----------------dg~v~iw~l~~ 519 (526)
... .....-+.|..+|+.+ ++.+. .+.+.+|.+..
T Consensus 516 ~~~-~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 516 TGT-GVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSS-CCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCC-CcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 321 2222345666787644 43222 36788888874
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1.6e-09 Score=114.77 Aligned_cols=273 Identities=11% Similarity=0.091 Sum_probs=175.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccc-----------eeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----------VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~-----------V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
+..|++++.++.|.-+|..+|+.+..+...... ...+.+ ++..+++++.|+.|..+|..++ +.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG---~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATG---KEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC---CEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCC---CEE
Confidence 567777777899999999999998887643210 112333 4567888899999999999887 344
Q ss_pred EecccC-c----cceEE-EEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCCC----------------
Q 009763 304 HTLKDH-T----AEVQA-VTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDG---------------- 355 (526)
Q Consensus 304 ~~~~~h-~----~~v~~-l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 355 (526)
..+..+ . ..+.. ... .+..++.++. +|.|..||..+|+.+..+.......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 433322 1 11111 111 2445555543 7999999999999988876432210
Q ss_pred -----------CCCCeeEEEEccCCcEEEEEeCCC-------------------cEEEEECCCCceeeEecC--CC----
Q 009763 356 -----------RPEGYTSAAFHPDGLILGTGTSEA-------------------LVKIWDVKSQANVAKFDG--HV---- 399 (526)
Q Consensus 356 -----------~~~~v~~~~~~~~~~~l~~g~~dg-------------------~i~iwd~~~~~~~~~~~~--~~---- 399 (526)
.......++++|++.++++++.++ .|..+|..+++.+..++. |.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 011123578899888888887664 499999999998877653 21
Q ss_pred ---CCeEEEEECCCC---CEEEEEeCCc-EEEEEcCCCccceEEecCCCC---------CC-------------------
Q 009763 400 ---GAVTAISFSENG---YYLATAAHDG-VKLWDLRKLKNFRSFESSDSE---------TP------------------- 444 (526)
Q Consensus 400 ---~~i~~l~~s~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~---------~~------------------- 444 (526)
.....+....+| ..++.++.++ ++++|..+++.+..+...... .+
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122223333367 6788888888 999999999987766533100 00
Q ss_pred -----eeEEEEcCCCCEEEEEeCC---------------------------------------------eEEEEEecccC
Q 009763 445 -----TNSVDFDHSGSYLAVASAD---------------------------------------------IRVYQVASVKA 474 (526)
Q Consensus 445 -----i~~i~~s~~~~~l~~~~~d---------------------------------------------i~v~~~~~~~~ 474 (526)
-..++|+|++.++++...+ +..||....+.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1257889998888876432 44445432222
Q ss_pred cceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 475 DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
.|.. .. ...+.+..+..++..++.++.||.+++||..+++
T Consensus 470 ~W~~----~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 470 AWSV----EH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEEE----EE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred Eeec----CC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 2322 11 1223334455677889999999999999998765
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=124.31 Aligned_cols=254 Identities=17% Similarity=0.142 Sum_probs=139.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCcc-c
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA-E 312 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~-~ 312 (526)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..++. .+..+..+.. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~---~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE---GLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C---CSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc---eeeeeeccCccc
Confidence 578899999999999999999999988876 556666666677778888899999999997753 3333322211 1
Q ss_pred eE-EEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce
Q 009763 313 VQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN 391 (526)
Q Consensus 313 v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 391 (526)
+. ...+. .+..+++++.|+.+..||..+|+.+..+.... ...++|++..+++++.++.|+.||.++++.
T Consensus 83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred cccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---------cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 10 00111 35577888889999999999999877664211 234556888899999999999999999987
Q ss_pred eeEecCCCCCeEEEEECCCC---CEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCee-EEEEcCCCCEE----EEEeC
Q 009763 392 VAKFDGHVGAVTAISFSENG---YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN-SVDFDHSGSYL----AVASA 462 (526)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~-~i~~s~~~~~l----~~~~~ 462 (526)
+..+..+. .....+..+. ..+++++.++ |..||.++++.+..+... .++. ...++++|... +.++.
T Consensus 153 ~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~pv~~~~~~~~dg~~~v~~~~~~~~ 227 (369)
T 2hz6_A 153 RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA---SPVVAFYVWQREGLRKVMHINVAVE 227 (369)
T ss_dssp CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS---SCEEEEEECTTSSCEEECCEEEEHH
T ss_pred EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC---CceEEEEEecCCceEeccceeeccc
Confidence 76654221 1223333321 4566677777 999999999987776642 3443 34555666432 22322
Q ss_pred CeEEEEEeccc----CcceeeeeecCCCCCcceEEEEEcC--CCCEEEEEeCCCcEEEeeCC
Q 009763 463 DIRVYQVASVK----ADWNCIKTFPDLSGTGKATCVKFGP--DAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 463 di~v~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~l~ 518 (526)
.+.+++...+. ..|.. .. .+.+. +| .+..|+.++.||.|+.++..
T Consensus 228 ~l~~ld~~tG~~~~~~~W~~----~~---~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 228 TLRYLTFMSGEVGRITKWKY----PF---PKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHHHTSCC----CC---CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred ceeeeehhcCCcccceeeee----cc---Ccccc----ccccccceEEEecccCCEEecCcc
Confidence 24444442222 22221 11 11110 11 33467777888888877765
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=2.5e-09 Score=113.45 Aligned_cols=274 Identities=12% Similarity=0.146 Sum_probs=170.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccc----------e-eEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK----------V-TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
+..|++++.++.|+-+|..+|+.+..+..+... + ..+.. .+..+++++.|+.|..+|..++. .+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~---~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ---RA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC---EE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC---Ee
Confidence 667777888999999999999999887643221 1 11222 45678889999999999998874 33
Q ss_pred Eeccc--CccceEEEEEec---CCCEEEEEE------CCCeEEEEeCCCCeEEEEeecCCCC------------------
Q 009763 304 HTLKD--HTAEVQAVTVHA---TNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTD------------------ 354 (526)
Q Consensus 304 ~~~~~--h~~~v~~l~~~p---~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~------------------ 354 (526)
..+.. +......+...| ++ .++.++ .+|.|..||..+|+.+..+......
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 33221 111001111111 34 444443 3789999999999998877521100
Q ss_pred --------CCCCCeeEEEEccCCcEEEEEeCCCc-------------------EEEEECCCCceeeEecC--CC------
Q 009763 355 --------GRPEGYTSAAFHPDGLILGTGTSEAL-------------------VKIWDVKSQANVAKFDG--HV------ 399 (526)
Q Consensus 355 --------~~~~~v~~~~~~~~~~~l~~g~~dg~-------------------i~iwd~~~~~~~~~~~~--~~------ 399 (526)
+.......+.++|++.++++++.++. |..||..+++.+..++. |.
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 00011235788898889999987764 99999999999887754 21
Q ss_pred -CCeEEEEECCCCC---EEEEEeCCc-EEEEEcCCCccceEEecCCC---------------------------------
Q 009763 400 -GAVTAISFSENGY---YLATAAHDG-VKLWDLRKLKNFRSFESSDS--------------------------------- 441 (526)
Q Consensus 400 -~~i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--------------------------------- 441 (526)
.++.......+|. .++.++.++ ++++|.++++.+........
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 1222222222564 788888888 99999999988744332210
Q ss_pred ----CCCeeEEEEcCCCCEEEEEeCC-----------------------------------------------eEEEEEe
Q 009763 442 ----ETPTNSVDFDHSGSYLAVASAD-----------------------------------------------IRVYQVA 470 (526)
Q Consensus 442 ----~~~i~~i~~s~~~~~l~~~~~d-----------------------------------------------i~v~~~~ 470 (526)
......++|+|+..++++...+ +..||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 0011237889998888876433 3344442
Q ss_pred cccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 471 SVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..+..|. +.. ...+....+...+.+++.|+.||.|+.||..+++
T Consensus 464 tG~~~W~----~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 464 KQQAAWE----VPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp TTEEEEE----EEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCeEeE----ccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 2222222 211 1122223455577889999999999999998775
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.19 E-value=2.1e-09 Score=108.58 Aligned_cols=270 Identities=11% Similarity=0.091 Sum_probs=182.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecc---------------------------------cc------cceeEEEEec--
Q 009763 237 VIATGGVDTNAVLFDRPSGQIVTTLSG---------------------------------HS------KKVTSVKFVT-- 275 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~~~~~~~~~~~---------------------------------h~------~~V~~l~~~~-- 275 (526)
.+.+|+..|.++||-+.+++.+..+.- +. +.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 356788899999999999888776530 00 1122344444
Q ss_pred ---CCCEEEEEeC-CCcEEEEeCCCCCceeeeE--ecccCccceEEEEE-e-cCCCEEEEEEC-----------------
Q 009763 276 ---EGDLFLTGSA-DKTVRVWQGSEDGNYDCKH--TLKDHTAEVQAVTV-H-ATNKYFVTASL----------------- 330 (526)
Q Consensus 276 ---~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~--~~~~h~~~v~~l~~-~-p~~~~l~s~s~----------------- 330 (526)
||++++.... ++.|.+.|+.+. ++.. .+. ....+..+++ . |++.++++++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~---~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVM---KCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTT---EEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCc---eEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 7777766654 567999999886 5554 332 2345788888 5 99999988852
Q ss_pred -CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC------------------------------
Q 009763 331 -DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA------------------------------ 379 (526)
Q Consensus 331 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg------------------------------ 379 (526)
++.+.++|..+.+...++...+ ....++++|+|+++++.+.+.
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred cCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 4579999999999988886431 235577999999998887553
Q ss_pred --------cEEEEECCC--Cce-eeEecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCcc------------ce
Q 009763 380 --------LVKIWDVKS--QAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKN------------FR 434 (526)
Q Consensus 380 --------~i~iwd~~~--~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~------------~~ 434 (526)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++... |.++|+.+.+. ..
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 477777776 444 344432 23567899999999999987764 99999996531 12
Q ss_pred EEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEeccc------CcceeeeeecCCCCCcce---EEEEEcCCCCE
Q 009763 435 SFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVK------ADWNCIKTFPDLSGTGKA---TCVKFGPDAKY 502 (526)
Q Consensus 435 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~------~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~ 502 (526)
.+. .......++|+|+| ++++...- +.+|+++... +....+..+..+...+.. .++.++|||++
T Consensus 326 ~v~---vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 326 EPE---LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW 401 (595)
T ss_dssp CCB---CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred EcC---CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence 222 25678999999999 66665543 8899986521 224566666654221111 12345899999
Q ss_pred EEEEeC---CCc----------EEEeeCCCCC
Q 009763 503 IAVGSM---DRN----------LRVFGLPGND 521 (526)
Q Consensus 503 l~s~~~---dg~----------v~iw~l~~~~ 521 (526)
|++++. |+. -.++|+.+++
T Consensus 402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 999864 332 1778886544
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.17 E-value=1.3e-09 Score=104.76 Aligned_cols=265 Identities=14% Similarity=0.060 Sum_probs=160.7
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
+.++...+++. |.+++.+ +..||. +++.+..+...........+. +..+..++.++.|..+|.. + .....
T Consensus 62 ~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g---~~~~~ 131 (330)
T 3hxj_A 62 ECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G---TEKWR 131 (330)
T ss_dssp EECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S---CEEEE
T ss_pred ccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C---CEEEE
Confidence 45666666555 4445444 888886 555443333222223333333 4567788888999999987 4 23333
Q ss_pred cccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEE
Q 009763 306 LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (526)
Q Consensus 306 ~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 385 (526)
...+...+.++...+++. +..++.++.+..||.. ++....+... ...+.++.+.+++.+++. + +.|..||
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-----~~~~~~~~~d~~g~l~v~-t--~~l~~~d 201 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-----DAITSAASIGKDGTIYFG-S--DKVYAIN 201 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-----SCCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-----CCceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence 333444556666666666 5567788999999998 7766665422 234666777777775544 4 8899999
Q ss_pred CCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeE
Q 009763 386 VKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIR 465 (526)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~ 465 (526)
.+++....+......+.++.+.++|.+.+....++|..+|. +++.+..+... ...+..+.+++++.+ .+++.+..
T Consensus 202 -~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g~l-~v~t~~gg 276 (330)
T 3hxj_A 202 -PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTDTI-YFGSYDGH 276 (330)
T ss_dssp -TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTSCE-EEECTTCE
T ss_pred -CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCCeE-EEecCCCC
Confidence 77777777665556788889988886655544455888874 55555555443 233445666666654 45555544
Q ss_pred EEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 466 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 466 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
++.++. .......+... ...+.++...++|. |+.++.+|.+++...+...
T Consensus 277 l~~~d~---~g~~~~~~~~~--~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 277 LYAINP---DGTEKWNFETG--SWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EEEECT---TSCEEEEEECS--SCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred EEEECC---CCcEEEEEEcC--CccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 444432 22223333221 34566777777776 6668889999998876544
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.15 E-value=7.4e-08 Score=94.56 Aligned_cols=267 Identities=12% Similarity=0.052 Sum_probs=159.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccc---------cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS---------KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
.+..+++++.++.|..||..+|+.+..+.... ..+.+.- ..++..++.++.++.|..+|..++. ...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~---~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGT---VAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCC---EEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCC---EEE
Confidence 36778888889999999999999887665421 2222221 2245678888999999999998763 333
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 384 (526)
.............. .+..++.++.++.+..+|..+++.+..................... +..+++++.+|.|..+
T Consensus 128 ~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 33222111111122 2557888889999999999999988777532110000000111222 3467778889999999
Q ss_pred ECCCCceeeEecCCCCC----eE---EEEECC--CCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 385 DVKSQANVAKFDGHVGA----VT---AISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 385 d~~~~~~~~~~~~~~~~----i~---~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
|..+++.+......... +. .+...| .+..+++++.++ +..+|..+++........ ....+... +
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~--~ 277 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFIVD--G 277 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEEEE--T
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCceEE--C
Confidence 99999887766432100 00 011111 245666666666 999999999877665432 23444443 5
Q ss_pred CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCC
Q 009763 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 521 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~ 521 (526)
..+++++.+ +..++..... ......... ...+..... .+..|+.++.+|.|.+||..+++
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~----~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGV----TLWTQSDLL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCC----EEEEECTTT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEcCCCeEEEEECCCCc----EEEeecccC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 566666665 6666653332 222222110 111222222 24678888889999999987654
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=1.9e-08 Score=106.67 Aligned_cols=260 Identities=14% Similarity=0.121 Sum_probs=162.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccc--ccceeEEEEec---CCCEEEEEe------CCCcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH--SKKVTSVKFVT---EGDLFLTGS------ADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h--~~~V~~l~~~~---~~~~l~s~s------~dg~i~iwd~~~~~~~~~~ 303 (526)
+..|++++.|+.|..+|..+|+.+..+... ......+..+| ++. +++++ .+|.|..||..++...-..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 567888889999999999999998776542 11111111112 444 44443 3789999999887432111
Q ss_pred Eeccc----------------------------CccceEEEEEecCCCEEEEEECCCe-------------------EEE
Q 009763 304 HTLKD----------------------------HTAEVQAVTVHATNKYFVTASLDNT-------------------WCF 336 (526)
Q Consensus 304 ~~~~~----------------------------h~~~v~~l~~~p~~~~l~s~s~dg~-------------------i~i 336 (526)
....+ +......+++.|++..++.++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 11110 0011125788898899999888764 999
Q ss_pred EeCCCCeEEEEeecCCCCC----CCCCeeEEEEccCCc---EEEEEeCCCcEEEEECCCCceeeEecCCC----------
Q 009763 337 YDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV---------- 399 (526)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---------- 399 (526)
||..+|+.+..+....... ............+|. .++.++.+|.++++|.++++.+.......
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 9999999988876421111 112223333334665 78899999999999999998874332110
Q ss_pred -----------------------------CCeEEEEECCCCCEEEEEeC-------------------------------
Q 009763 400 -----------------------------GAVTAISFSENGYYLATAAH------------------------------- 419 (526)
Q Consensus 400 -----------------------------~~i~~l~~s~~~~~l~~~~~------------------------------- 419 (526)
..-..++|+|+..++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 00113688888777776522
Q ss_pred --------------Cc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeee
Q 009763 420 --------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482 (526)
Q Consensus 420 --------------d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~ 482 (526)
++ |..||+.+++....+... .+...-.+...+.++++++.| +++|+. .+.+.+..+
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~----~tG~~lw~~ 512 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAA----DTGEKLWEQ 512 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEE
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEEC----CCCccceee
Confidence 25 999999999988777654 233333556678888889888 777776 344555444
Q ss_pred cCCCCCcceEEEEEcCCCCEE
Q 009763 483 PDLSGTGKATCVKFGPDAKYI 503 (526)
Q Consensus 483 ~~~~~~~~v~~~~~s~~~~~l 503 (526)
.... .....-+.|..+|+..
T Consensus 513 ~~~~-~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 513 PAAS-GVMAAPVTYSVDGEQY 532 (689)
T ss_dssp ECSS-CCCSCCEEEEETTEEE
T ss_pred eCCC-CcccCceEEEECCEEE
Confidence 4321 1122336667787743
No 240
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.14 E-value=2.3e-11 Score=114.59 Aligned_cols=52 Identities=35% Similarity=0.625 Sum_probs=48.7
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~ 53 (526)
+.|+||++++++||++| |||+|||.+|++|+.+++. ||+|+++|+.++|+|-
T Consensus 209 ~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 209 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp TBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred cCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 57999999999999998 9999999999999998775 9999999999999875
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=1.2e-09 Score=104.98 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=158.7
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCc
Q 009763 231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310 (526)
Q Consensus 231 ~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 310 (526)
+..++ .|.+++.++.|..|| .+++....+..+...+.++...+++. |..++.+ |..||. ++ .....+....
T Consensus 27 ~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g---~~~~~~~~~~ 97 (330)
T 3hxj_A 27 LAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DG---TEKWRFDTKK 97 (330)
T ss_dssp ECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CG---GGGGGSCC--
T ss_pred EccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CC---cEEEEEECCC
Confidence 33444 456677788999999 88888776665555567777766665 4555554 888885 32 2222222222
Q ss_pred cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCc
Q 009763 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 390 (526)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 390 (526)
.......+. +..+..++.++.+..+|.. ++........ ...+.++...+++. +.+++.++.|..||.. ++
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~-----~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK-----KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS-----SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC-----CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC
Confidence 222223333 5667778889999999998 7766555422 12355666776776 5557778999999998 87
Q ss_pred eeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEe
Q 009763 391 NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVA 470 (526)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 470 (526)
....+......+.++.+.++|.+.+.. ++|..|| .+++....+... ...+.++..+++|.+.+. +.+..++.++
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~-t~~~gl~~~~ 241 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAG--YWTVTRPAISEDGTIYVT-SLDGHLYAIN 241 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCS--SCCCSCCEECTTSCEEEE-ETTTEEEEEC
T ss_pred EeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccC--CcceeceEECCCCeEEEE-cCCCeEEEEC
Confidence 776766555667778887787755544 6699999 666666555443 356788888888866554 4442333333
Q ss_pred cccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 471 SVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
. .......+... ...+.++.+.+++ .|+.++.+|.|..++.
T Consensus 242 ~---~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 242 P---DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp T---TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred C---CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 2 22222233221 2223345555555 4667778888888885
No 242
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=9.6e-11 Score=86.47 Aligned_cols=52 Identities=27% Similarity=0.535 Sum_probs=47.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+++.+||++| |||+|++.+|++|++. +.+||+|+.+++.++|++-
T Consensus 9 ~~C~IC~~~~~~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 9 FRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred CCCCCccccccCCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 47999999999999996 9999999999999997 6789999999998888765
No 243
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=2.3e-09 Score=104.13 Aligned_cols=244 Identities=11% Similarity=0.021 Sum_probs=157.4
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccc-------ccceeEEEEecCCCEEEEEeC--CCc
Q 009763 228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT 288 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~----------~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--dg~ 288 (526)
.+.++|++++++++. .++.|.+||..+++.+.++..+ ......+.|+|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999888876 3688999999999999988643 123568999999999988874 457
Q ss_pred EEE--EeCCCCCceeeeEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCCC-----CeEEEEeecCCCCCCCCCe
Q 009763 289 VRV--WQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGY 360 (526)
Q Consensus 289 i~i--wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v 360 (526)
|.+ +|..+ +..+.. .+. ..+.|++ ..+++.+.||.+.+.|+.+ ++........ ......+.
T Consensus 149 v~V~~iD~~t------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~-i~vg~~P~ 217 (368)
T 1mda_H 149 AGLSVPGASD------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA-QNCSSQAA 217 (368)
T ss_dssp EEEEETTTEE------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT-SCBCSCCE
T ss_pred EEEEEEchhh------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee-eeCCCCcc
Confidence 888 88755 222211 011 1223444 4556667889998899887 3322110000 00111222
Q ss_pred eEEEEccCCcEEEEEeCCCcEEEEECCCCc--eeeEecCC----------CCCeEEEEECCCCCEEEEEeC---------
Q 009763 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGH----------VGAVTAISFSENGYYLATAAH--------- 419 (526)
Q Consensus 361 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~--------- 419 (526)
. .+++..++..+. +.|.+.|+.+.. .+..+... ......+.|+|++..++++..
T Consensus 218 ---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 218 ---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred ---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 3 555555555555 999999986542 22222110 111222689999988886532
Q ss_pred -CcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCE-EEEEe--CC-eEEEEEecccCcceeeeeecCCCCCcceEEE
Q 009763 420 -DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY-LAVAS--AD-IRVYQVASVKADWNCIKTFPDLSGTGKATCV 494 (526)
Q Consensus 420 -d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~-l~~~~--~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (526)
+++.++|+.+.+.+..+... .....+.|+|+|++ +++.. .+ +.|+|. .+++.+.++... .....+
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~----~t~kvv~~I~vg---~~P~~i 362 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDA----ASDQDQSSVELD---KGPESL 362 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEES----SSCEEEEECCCC---SCCCEE
T ss_pred CCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEEC----CCCcEEEEEECC---CCCCEE
Confidence 24779999999988888764 36889999999984 44444 23 999997 667778777653 334455
Q ss_pred EEc
Q 009763 495 KFG 497 (526)
Q Consensus 495 ~~s 497 (526)
++.
T Consensus 363 ~~~ 365 (368)
T 1mda_H 363 SVQ 365 (368)
T ss_dssp ECC
T ss_pred Eee
Confidence 554
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=3e-08 Score=91.06 Aligned_cols=199 Identities=5% Similarity=-0.027 Sum_probs=137.1
Q ss_pred CCeEEEEecCCCCEEEEEeC--CCcEEEEeCCCCcEEEEeccccc-ceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCCc
Q 009763 224 PGIVSLDIHYSKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~--dg~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~ 299 (526)
.....+.|++++.++++.+. ++.|.++|..+++.+..+.-... ....+++. ++.| ++.-.++.+.++|..+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-- 96 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-- 96 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT--
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC--
Confidence 34678999998765555543 57999999999999888752221 22345554 4444 44456899999999876
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
+.+.++..-... ...++++|+.++.+..++.|.++|..+.+.+..+............+.+.|. +|.+++....++
T Consensus 97 -~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~ 172 (266)
T 2iwa_A 97 -SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD 172 (266)
T ss_dssp -EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred -cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence 555555321111 2335567877777777899999999999888877632111111236678888 776666666688
Q ss_pred cEEEEECCCCceeeEecCC-------------CCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCC
Q 009763 380 LVKIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL 430 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~ 430 (526)
.|.+.|..+++.+..+... ....+.++|+|+++.|++++.. . |...++...
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988887532 1356899999998877776655 3 888887654
No 245
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.08 E-value=3.1e-07 Score=90.02 Aligned_cols=261 Identities=10% Similarity=0.048 Sum_probs=156.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccce
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (526)
++..+++++.++.|..+|..+|+.+............... .+..++.++.++.|..+|..++. .+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~---~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA---VKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC---EEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc---EEEEEeCCCCce
Confidence 4667888888999999999999988776644332222222 24578888899999999998763 333332211110
Q ss_pred -----EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCeeEEEEcc--CCcEEEEEeCCCcEEEE
Q 009763 314 -----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIW 384 (526)
Q Consensus 314 -----~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~g~~dg~i~iw 384 (526)
..... .+..++.++.++.+..+|..+++.+.........+.. ..+..+...| .+..+++++.++.+..+
T Consensus 177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 11122 2457788888999999999999988776532111100 0000011111 24567777889999999
Q ss_pred ECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
|..+++.+..... .....+.. ++..+++++.++ |..+|..+++......... ......... .+..|++++.+
T Consensus 255 d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 255 DLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp ETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTT
T ss_pred ECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCC
Confidence 9999988766652 23445554 355666666665 9999999998776655221 112222222 25677777777
Q ss_pred --eEEEEEecccCcceeeeeecCCCCCcceE-EEEEcCCCCEEEEEeCCCcEEEee
Q 009763 464 --IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVFG 516 (526)
Q Consensus 464 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~v~iw~ 516 (526)
+.+++.. +.+.+..+... ...+. .... .+..|+.++.+|.|+.|+
T Consensus 328 g~l~~~d~~----tG~~~~~~~~~--~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 328 GYLHWINVE----DGRFVAQQKVD--SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SEEEEEETT----TCCEEEEEECC--TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CeEEEEECC----CCcEEEEEecC--CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 5555542 23333333221 11111 1122 245788899999999986
No 246
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.05 E-value=6.7e-11 Score=104.92 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=48.7
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCC--CCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPV--TGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~--~~~~~~~~~~~~~ 53 (526)
|.|+||++++++||++.+|||+|||.+|++|++++| +||+ |.++++.+||++-
T Consensus 182 l~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp SBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred eECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 579999999999999878999999999999999875 6999 6699999999886
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.01 E-value=1.2e-06 Score=81.29 Aligned_cols=248 Identities=7% Similarity=-0.027 Sum_probs=145.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCcE-----EEEecccccceeEEEEecCCCEEE-EEeCCCcEEEEeCCCCCceeeeEecccC
Q 009763 236 DVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDH 309 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h 309 (526)
.+|+.+. .+.|+.+++..... ...+......+..++|++++..|+ +-..++.|..++..... ....+...
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~~ 77 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQD 77 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECTT
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cEEEEECC
Confidence 3455544 34788888765432 112222234578999999665544 54567899999987642 12222222
Q ss_pred ccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC---CCcEEEEE
Q 009763 310 TAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWD 385 (526)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd 385 (526)
......+++++++..++.+. ..+.|.++++.......... . + ......++++|++..|+.+.. .+.|..++
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~---~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-T---G-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S---S-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-C---C-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 24678999999766555554 56789999987543222221 1 1 135689999996555544443 46888888
Q ss_pred CCCCceeeEe-cCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeC
Q 009763 386 VKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 386 ~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
+.... ...+ .........+++++++..|+.+... + |.++|+........+.. ......++++ +..|+++..
T Consensus 153 ~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 153 MDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp TTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEET
T ss_pred cCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEEC
Confidence 75432 2222 2233467899999987777666655 4 99999875443333322 2345667665 456666654
Q ss_pred C-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCC
Q 009763 463 D-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 501 (526)
Q Consensus 463 d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 501 (526)
. .+|+.++. .....+..+.... ......+++.|++.
T Consensus 227 ~~~~v~~~d~--~~g~~~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDL--AISKEMDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEET--TTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred CCCeEEEEeC--CCCCceEEEcccc-ccccceeeecCccC
Confidence 4 44444432 3345555554321 12356777877754
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=2e-07 Score=85.48 Aligned_cols=200 Identities=13% Similarity=0.143 Sum_probs=135.3
Q ss_pred cEEEEeccccc--ceeEEEEecCCCEEEEEeC--CCcEEEEeCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEE-E
Q 009763 256 QIVTTLSGHSK--KVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTA-S 329 (526)
Q Consensus 256 ~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~-s 329 (526)
+.+.++. |.. ....+.|++++.++++.+. ++.|+++|..++ +.+..+. +.......+++. ++.++.+ -
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG---KVENIHKMDDSYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC---CEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence 4455554 443 3578999998765555543 579999999987 4444432 111223355555 4455444 4
Q ss_pred CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC-----CCeEE
Q 009763 330 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTA 404 (526)
Q Consensus 330 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~ 404 (526)
.++.+.++|..+.+.+..+... . . . ...+++||..++++..++.|.++|..+.+.+..+.-.. ..++.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~-~--~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-M-K--D---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-S-S--S---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-C-C--C---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 5789999999999999888632 0 1 1 23355678777777778999999999988887775321 24678
Q ss_pred EEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC-----------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 405 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 405 l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
+.|. +|...+....++ |.+.|..+++.+..+.... .......++|+|+++.+++++.. -++|.+
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 8888 675444443444 9999999999988887531 12356899999999888887766 555544
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.00 E-value=1.7e-07 Score=84.99 Aligned_cols=199 Identities=11% Similarity=0.117 Sum_probs=136.1
Q ss_pred cEEEEecccccc--eeEEEEecCCCEEEEEeCCC--cEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-C
Q 009763 256 QIVTTLSGHSKK--VTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-L 330 (526)
Q Consensus 256 ~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~ 330 (526)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.++ +.+..+.-. .........+.++.|.... .
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg---kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG---KTLQQIELG-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC---CEEEEEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCC---cEEEEEecC-CccceeEEEEeCCEEEEEEee
Confidence 3455663 4433 4788898 677777777766 8999999987 444443322 2232222223455555554 5
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC-----CCeEEE
Q 009763 331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAI 405 (526)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l 405 (526)
++.+.+||..+.+.+.++... . ....+.+|+..|+.+..++.|.++|..+.+.+..+.-.. ..++.+
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~---~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYD---G-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECS---S-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred CCEEEEEECccCcEEEEEECC---C-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 889999999999999998742 1 112333567777777767889999999998887765421 345667
Q ss_pred EECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC----------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 406 SFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 406 ~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~----------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
.|. +|+..+....+. |.+.|..+++....+.... .....+.|+|+|+++.|++.+.. -++|.+
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 776 676554443444 9999999999988887641 12356899999999999988877 666665
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.99 E-value=2.4e-07 Score=88.83 Aligned_cols=248 Identities=10% Similarity=0.075 Sum_probs=147.7
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc-----------------cCccceEEEEEecCCCEEEEE
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-----------------DHTAEVQAVTVHATNKYFVTA 328 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~l~~~p~~~~l~s~ 328 (526)
....+++|.+++++++++..++.|..|+..+.. ........ .....+..+++.+++..|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 345678899999878888889999999876532 12111100 011357899999834455556
Q ss_pred ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeC-----------------CCcEEEEECCCCc
Q 009763 329 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS-----------------EALVKIWDVKSQA 390 (526)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~-----------------dg~i~iwd~~~~~ 390 (526)
...+.+..+|..++.. ..+..............+++.+ +|++.++-.. +|.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5566688899776542 2221100101113467899999 9987776432 3678899987665
Q ss_pred eeeEecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCc--cceEEecCCCCCCeeEEEEcCCCCEEEEEeC----
Q 009763 391 NVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASA---- 462 (526)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~--~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~---- 462 (526)
...... .....+.++|+++|.+|+++... + |..||+.... ....+... .. ...++++++|.+.++...
T Consensus 177 ~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 177 TTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecCcccc
Confidence 432222 22345779999999877766443 4 9999987532 11222211 23 788999999987777654
Q ss_pred ------CeEEEEEecccCcceeeeeecCCCC--CcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCCCCC
Q 009763 463 ------DIRVYQVASVKADWNCIKTFPDLSG--TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 523 (526)
Q Consensus 463 ------di~v~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~~~~ 523 (526)
...|+.++.. ...+..+..... ...++++++ .++++.++....+.|.++++....+.
T Consensus 253 ~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~~~ 317 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKGNS 317 (322)
T ss_dssp STTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC------
T ss_pred cccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccccCc
Confidence 3556666432 333444432211 234666766 35665555557789999998765544
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=4.1e-06 Score=90.73 Aligned_cols=286 Identities=9% Similarity=0.028 Sum_probs=180.2
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-------cccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-------HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~-------h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 295 (526)
...|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|. |-.|+.++-|..|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999988887555 4444 588899877655443221 235699999988887 4556777778889865
Q ss_pred CCCceeeeEecc----cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC-CC--CCCCCCeeEEEEccC
Q 009763 296 EDGNYDCKHTLK----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-GT--DGRPEGYTSAAFHPD 368 (526)
Q Consensus 296 ~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~ 368 (526)
... +....... -....|.++...++|++ ..|+.++-|..||..++......... .. ......|.++...++
T Consensus 339 ~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 339 RNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGS-SEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred ccc-ceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 431 11111110 12356999998887764 45777778999998877544332111 00 012357899999888
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEec----CCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEec----CC
Q 009763 369 GLILGTGTSEALVKIWDVKSQANVAKFD----GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES----SD 440 (526)
Q Consensus 369 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~----~~ 440 (526)
+.+|.+|+.++-|..||..+++...... .....|.++...++|.+.+... +|+.+||..+++....... ..
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccccc
Confidence 8866777777789999988775432221 1345799999988887655544 7799999876543222111 11
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeee--ecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 441 SETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKT--FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 441 ~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
....|.++..+++|.+.+.....+..|+.... .. .... .........|.++..+++|.+.++. .. .|..|+..
T Consensus 496 ~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~--~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~ 570 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGGEEGLSVFKQEGL--DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEK 570 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEESSCEEEEEEETT--EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred CCceEEEEEECCCCCEEEEeCCceEEEeCCCC--eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCC
Confidence 13568999999999887766644777776321 11 1110 0000124578999999888855544 34 46777754
Q ss_pred C
Q 009763 519 G 519 (526)
Q Consensus 519 ~ 519 (526)
.
T Consensus 571 ~ 571 (795)
T 4a2l_A 571 D 571 (795)
T ss_dssp T
T ss_pred C
Confidence 3
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=6.2e-06 Score=89.34 Aligned_cols=282 Identities=8% Similarity=0.011 Sum_probs=177.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec------ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
...|.++...++|.+ ..|+.++-|..|+..++....... .....|.++...++|. |-.|+.++-|..|+..+
T Consensus 309 ~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 356999999888874 456667778889876554322211 1235689999888887 45577777799999776
Q ss_pred CCceeeeEec------ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCc
Q 009763 297 DGNYDCKHTL------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (526)
Q Consensus 297 ~~~~~~~~~~------~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 370 (526)
+. +.....- .-....|.++...++++.|..|+.++-+..||..+++...... .........|.++...++|.
T Consensus 387 ~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-~~~~l~~~~v~~i~~d~~g~ 464 (795)
T 4a2l_A 387 QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ-RNSQLVNENVYAILPDGEGN 464 (795)
T ss_dssp CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT-TTSCCSCSCEEEEEECSSSC
T ss_pred Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec-CCCCcCCCeeEEEEECCCCC
Confidence 42 1111100 0123578999998888856778887889999998876443221 11112235789999888887
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEecC------CCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEec---C--
Q 009763 371 ILGTGTSEALVKIWDVKSQANVAKFDG------HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES---S-- 439 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~---~-- 439 (526)
+.+.. . +-+.+||..+++....... ....|.++...++|.+.+... +||..||..+.+. .+.. .
T Consensus 465 lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~ 539 (795)
T 4a2l_A 465 LWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSN 539 (795)
T ss_dssp EEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCG
T ss_pred EEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCC
Confidence 65554 4 4588999877654322111 235789999998887666554 7799999876654 2221 0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 440 DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.....|.++..+++|.+.+.....+..|+.. ...........+. ....|.++...++|++.+++ .. -|..|+..
T Consensus 540 l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~--~~~~~~~~~~~gl-~~~~i~~i~~d~~g~lWi~t-~~-Gl~~~~~~ 613 (795)
T 4a2l_A 540 VTKLFTNCIYEASNGIIWVGTREGFYCFNEK--DKQIKRYNTTNGL-PNNVVYGILEDSFGRLWLST-NR-GISCFNPE 613 (795)
T ss_dssp GGGSCEEEEEECTTSCEEEEESSCEEEEETT--TTEEEEECGGGTC-SCSCEEEEEECTTSCEEEEE-TT-EEEEEETT
T ss_pred CCCCeeEEEEECCCCCEEEEeCCCceeECCC--CCcEEEeCCCCCC-chhheEEEEECCCCCEEEEc-CC-ceEEEcCC
Confidence 1134688999999998776655446666642 2222222222222 23468899998888765554 34 45566654
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.95 E-value=1.4e-07 Score=85.50 Aligned_cols=191 Identities=11% Similarity=0.059 Sum_probs=132.0
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSED 297 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~ 297 (526)
........+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.... ........++++.|... ..++.+.+||..+.
T Consensus 40 d~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 40 DTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp CTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred CCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence 334456788898 677777777766 89999999999988876433 33333233345555444 46889999999886
Q ss_pred CceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC
Q 009763 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (526)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 377 (526)
+.+.++... ..-+.++ +++..|+.+..++.|.++|..+.+.+..+...........++.+.|. +|.+++..-.
T Consensus 118 ---~~~~ti~~~-~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 118 ---RQVRSFNYD-GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp ---CEEEEEECS-SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred ---cEEEEEECC-CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 555555422 1223333 56777777666888999999999988887642111111345567776 7877766667
Q ss_pred CCcEEEEECCCCceeeEecCC------------CCCeEEEEECCCCCEEEEEeCC
Q 009763 378 EALVKIWDVKSQANVAKFDGH------------VGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~l~~~~~d 420 (526)
++.|.+.|..+++.+..+... ....+.|+|+|+++.|++.+..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 889999999999988877531 1356899999998888887765
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=2.6e-08 Score=100.73 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=146.7
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCcEEEEecc-cccceeEEEE-e-cCCCEEEEEe------------------CCCcEE
Q 009763 233 YSKDVIATGGV-DTNAVLFDRPSGQIVTTLSG-HSKKVTSVKF-V-TEGDLFLTGS------------------ADKTVR 290 (526)
Q Consensus 233 ~~~~~l~t~~~-dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~-~-~~~~~l~s~s------------------~dg~i~ 290 (526)
+||+++.+... ++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47887766654 56799999999998774432 2245788888 4 8999988884 346789
Q ss_pred EEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC--------------------------------------
Q 009763 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-------------------------------------- 332 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-------------------------------------- 332 (526)
++|..+. +...++.--. ....++++|+|+++++.+.+.
T Consensus 179 vID~~t~---~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 179 AVDADKW---EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEETTTT---EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEECCCC---eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9999875 4555444211 356678999999999888653
Q ss_pred eEEEEeCCC--CeE-EEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEEECCCCc------------eeeEec
Q 009763 333 TWCFYDLSS--GIC-LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA------------NVAKFD 396 (526)
Q Consensus 333 ~i~iwd~~~--~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~------------~~~~~~ 396 (526)
.|.+.|..+ ++. +..+... ....++.++|||+++++++ .+..|.++|+.+.+ .+....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIA------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEE------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred cEEEEeCcccCCceeEEEEecC------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 366777766 433 3333221 2456899999998777665 57899999998653 233333
Q ss_pred CCCCCeEEEEECCCCCEEEEE-eCCc-EEEEEcCC----------CccceEEecCCCCC---CeeEEEEcCCCCEEEEEe
Q 009763 397 GHVGAVTAISFSENGYYLATA-AHDG-VKLWDLRK----------LKNFRSFESSDSET---PTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 397 ~~~~~i~~l~~s~~~~~l~~~-~~d~-i~iwd~~~----------~~~~~~~~~~~~~~---~i~~i~~s~~~~~l~~~~ 461 (526)
-......++|+++| ++.+. -.++ |.+||+.+ .+.+..+..+-..+ ....+.++|||++|++++
T Consensus 329 -vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp -CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred -CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 23457889999999 55544 4455 99999977 44555665542100 002234589999999986
Q ss_pred C
Q 009763 462 A 462 (526)
Q Consensus 462 ~ 462 (526)
.
T Consensus 407 k 407 (595)
T 1fwx_A 407 K 407 (595)
T ss_dssp S
T ss_pred C
Confidence 5
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=2e-06 Score=79.78 Aligned_cols=219 Identities=11% Similarity=0.035 Sum_probs=139.7
Q ss_pred CeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCCceee
Q 009763 225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 225 ~I~~~~~s~~~~~l-~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~ 302 (526)
.+..++|+++++.| ++-..++.|..++...+.....+.........+++++++..| ++-...+.|.+++...... ..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~ 115 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RV 115 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EE
Confidence 46799999976544 455557899999987655444443333567899999975544 4545678899999865321 11
Q ss_pred eEecccCccceEEEEEecCCCEEEEEEC---CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE-EEeCC
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSE 378 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d 378 (526)
+ ..........++++|++..|+.+.. .+.|..+++.... ...+... .......+++++++..|+ +-...
T Consensus 116 ~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~----~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 116 L--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQD----NLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp E--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECT----TCSCEEEEEEETTTTEEEEEETTT
T ss_pred E--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEEC----CCCCCcEEEEcCCCCEEEEEECCC
Confidence 1 1212245789999997766666554 3688888876433 2222211 123578899999765554 44556
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCC
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 455 (526)
+.|.++|+........+.. ......+++. +..|+.+..+ + |..+|..+++....+.... ......+++.|++.
T Consensus 189 ~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred CEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence 7899999875443333332 2345677764 4455555543 4 9999999988888776532 22467788888764
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=4.8e-07 Score=81.96 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=134.5
Q ss_pred cEEEEecccccc--eeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCe
Q 009763 256 QIVTTLSGHSKK--VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 333 (526)
Q Consensus 256 ~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~ 333 (526)
+.+.++. |... ...+.|+ ++.++++.+.+|.|+++|+.++.....+ +.. ...--.+++. .+..++..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~~-g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLASD-GERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEEC-SSCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEEe-CCEEEEEEccCCE
Confidence 3455553 4332 4688887 4667788888899999999987433322 222 1112335553 2344444456899
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC-----CCeEEEEEC
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAISFS 408 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s 408 (526)
+.+||..+.+.+.++... . .-..++ +|+..|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|.
T Consensus 118 v~V~D~~Tl~~~~ti~~~---~---eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS---G---EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp EEEEETTTTEEEEEEECS---S---CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEECCcCcEEEEEeCC---C---ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 999999999999998742 1 112333 567778777778999999999998888775321 245677877
Q ss_pred CCCCEEEEEeCCc-EEEEEcCCCccceEEecCC-----------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 409 ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 409 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
+|+..+...... |.+.|..+++.+..+.... .....+.|+++|+++.|++.+.. -++|.+
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 676554443444 9999999999888877531 13467899999988888877766 666655
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=4.7e-07 Score=95.74 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=126.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccc----------e-eEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK----------V-TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
+..+++++.++.|.-+|..+|+.+..+...... + ..+.+ .+..++.++.|+.|..+|..++. .+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~---~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK---AI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC---EE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC---Ee
Confidence 567777788999999999999998887643211 0 11222 35578888999999999998874 33
Q ss_pred EecccCc----cceEE-EEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCC-C----------------
Q 009763 304 HTLKDHT----AEVQA-VTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTD-G---------------- 355 (526)
Q Consensus 304 ~~~~~h~----~~v~~-l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~-~---------------- 355 (526)
..+.... ..+.+ ..+ .+..++.++. +|.|..+|..+|+.+..+...... .
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 3322110 11111 011 1344555432 589999999999998887632100 0
Q ss_pred ---------CCCCeeEEEEccCCcEEEEEeCCC-------------------cEEEEECCCCceeeEecC--CC------
Q 009763 356 ---------RPEGYTSAAFHPDGLILGTGTSEA-------------------LVKIWDVKSQANVAKFDG--HV------ 399 (526)
Q Consensus 356 ---------~~~~v~~~~~~~~~~~l~~g~~dg-------------------~i~iwd~~~~~~~~~~~~--~~------ 399 (526)
.......+++.|+..+++.++.++ .|..+|.++++.+..++. |.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 001123468888888888888776 399999999998887754 21
Q ss_pred -CCeEEEEECCCCC---EEEEEeCCc-EEEEEcCCCccceEE
Q 009763 400 -GAVTAISFSENGY---YLATAAHDG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 400 -~~i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~ 436 (526)
.+.....+..+|+ .++.++.++ ++++|..+++.+...
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 2222222223665 678888888 999999999887443
No 258
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.89 E-value=1.2e-05 Score=76.94 Aligned_cols=277 Identities=9% Similarity=0.057 Sum_probs=155.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec----ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 298 (526)
...+.+|.|...+..+++| ..|.| +...+.|+.-..+. .....+.++.|.+ +..++ ++.+|.|.. ..+.+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 3479999998777777754 56655 33344443322221 1244688999976 44444 455665443 233334
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
.+..+.....+...+..+.+.+++..++.+ .+|.|.. ....++.-..... .....+..+.+.+++.+++++...
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETTS
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECCC
Confidence 444433222234557788887766655544 5565432 2223433333321 223468899999998888777544
Q ss_pred CcEEEEEC--CCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecC--CCCCCeeEEEEcCC
Q 009763 379 ALVKIWDV--KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS--DSETPTNSVDFDHS 453 (526)
Q Consensus 379 g~i~iwd~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~--~~~~~i~~i~~s~~ 453 (526)
+..+-+|- .+.+.+. ......+..+.+.+++..++++. ++ +++.+...++....+... .....+..+.+.++
T Consensus 184 ~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp SEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred cEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 43333442 2223331 23456788999999987766554 45 666542223322222211 11235788999988
Q ss_pred CCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 454 ~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
+.+++++... .+|.-......|..+...... ...+.++.|.+++. +++++.+|.|.-++-
T Consensus 261 ~~~~~~g~~g-~i~~S~DgG~tW~~~~~~~~~--~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 261 NEVWLAGGAG-ALLCSQDGGQTWQQDVDVKKV--PSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SCEEEEESTT-CEEEESSTTSSCEECGGGTTS--SSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CEEEEEeCCC-eEEEeCCCCcccEEcCccCCC--CCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 8887776644 334333334567665432221 34567888875554 666677998776664
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.87 E-value=3.8e-06 Score=79.72 Aligned_cols=234 Identities=14% Similarity=0.091 Sum_probs=139.4
Q ss_pred cEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC--Ce
Q 009763 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD--NT 333 (526)
Q Consensus 256 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d--g~ 333 (526)
+.+..+... .....++|+++++++++-..++.|..||.... ....+. ....+..+++.++|+++++.... ..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence 344445432 45678999999987777768899999987652 222221 23468899999999976655443 24
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce-eeEe---------cCCCCCeE
Q 009763 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKF---------DGHVGAVT 403 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~---------~~~~~~i~ 403 (526)
|..+|..+++........ .......++..+++..+++-..++.|+++|...+.. +... .......+
T Consensus 97 v~~~d~~~g~~~~~~~~~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp EEEEECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred EEEEcCCCCeEEEEEeCC----CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 777887777754333211 112234555566666555555688999999875421 2111 01112445
Q ss_pred EEEECCCCCEEEEEeCC-c-EEEEEcCC-Ccc--ceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcc
Q 009763 404 AISFSENGYYLATAAHD-G-VKLWDLRK-LKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW 476 (526)
Q Consensus 404 ~l~~s~~~~~l~~~~~d-~-i~iwd~~~-~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~ 476 (526)
.+ ++++.+|+++... + |..||+.. +.. ...+.. ......++++++|.++++.... |.+++. . ...
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~--~-G~~ 244 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAP--D-RST 244 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECT--T-CCE
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECC--C-CCE
Confidence 56 7788777766654 3 99999874 321 122221 1346779999999876655444 555542 1 111
Q ss_pred eeeeeecCCCCCcceEEEEEc---CCCCEEEEEeCC
Q 009763 477 NCIKTFPDLSGTGKATCVKFG---PDAKYIAVGSMD 509 (526)
Q Consensus 477 ~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~d 509 (526)
..+..+.. .....++++|. ++++.|++++..
T Consensus 245 ~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 245 TIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEeeccc--ccCCceEEEEecccCCCCEEEEECCC
Confidence 11222221 13568999998 888888776654
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.87 E-value=1.7e-06 Score=77.70 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=133.7
Q ss_pred cEEEEeccccc--ceeEEEEecCCCEEEEEeCCC--cEEEEeCCCCCceeeeEecccCcc-ceEEEEEecCCCEE-EEEE
Q 009763 256 QIVTTLSGHSK--KVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTA-EVQAVTVHATNKYF-VTAS 329 (526)
Q Consensus 256 ~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~l-~s~s 329 (526)
+.+.++ .|.. -...+.|++ +.++.+.+.+| .|+++|+.++ +.+..+.-... .--.+++. ++.| ...-
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg---kv~~~~~l~~~~fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG---RILQRAEVPPPYFGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE--TTEEEEEES
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCC---CEEEEEeCCCCcceeEEEEe--CCEEEEEEe
Confidence 345555 3543 356889986 66666766654 8999999987 44444332111 11234443 4444 4445
Q ss_pred CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCC-----CCeEE
Q 009763 330 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTA 404 (526)
Q Consensus 330 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~ 404 (526)
.++.+.+||..+.+.+.++... + .-..++ +++..|+++..++.|.++|..+.+.+.++.-.. ..++.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~---~---~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYP---G---EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECS---S---CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCC---C---CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 6899999999999999998743 1 113333 567777777778999999999998887775421 35566
Q ss_pred EEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCC-----------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEE
Q 009763 405 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (526)
Q Consensus 405 l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 469 (526)
+.+. +|+.++...... |.+.|..+++.+..+.... .....+.|+++|+++.|++.+.. -++|.+
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v 231 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI 231 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence 7775 666554443444 9999999999988887431 12356899999999888888876 666665
No 261
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=7.5e-10 Score=108.55 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=93.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC-
Q 009763 276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD- 354 (526)
Q Consensus 276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~- 354 (526)
++..+++++.||.|+.||..++ +.+..+.. +.+.+..+..++..+++++.||.|+.||..+++.+..+......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC---CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCC---CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 5778999999999999999887 44444443 44545555567777888889999999999988776555311000
Q ss_pred CCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccc
Q 009763 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF 433 (526)
Q Consensus 355 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~ 433 (526)
....++ +. ++..+++|+.++.|+.||..+|+.+..+..+. ...++|++..+++++.++ |+.||.++++..
T Consensus 83 ~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 83 VQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp HTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred cccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 000111 11 34567788889999999999999887776543 234566788888888877 999999999887
Q ss_pred eEEecCCCCCCeeEEEEcCCC---CEEEEEeCC--eEEEEE
Q 009763 434 RSFESSDSETPTNSVDFDHSG---SYLAVASAD--IRVYQV 469 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~~~---~~l~~~~~d--i~v~~~ 469 (526)
..+.... .....++.+. ..+++++.+ +..|+.
T Consensus 154 W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 154 WNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp CEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred EeEeccc----ccCccccCCccccceEEEECCCCEEEEEEC
Confidence 6665321 1222333332 455666666 555554
No 262
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.86 E-value=1.2e-09 Score=114.52 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=49.0
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
++|+||+++|++|||.|.+|++|||..|++|+..+++||+|+++|+.++|+|-
T Consensus 892 F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 892 FLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp GBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred hCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 47999999999999998434899999999999999999999999999999986
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=6.2e-07 Score=81.21 Aligned_cols=190 Identities=13% Similarity=0.056 Sum_probs=131.0
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCc
Q 009763 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~ 299 (526)
..+.....+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. ......-..++++ +.+....++.+.+||..+.
T Consensus 52 d~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl-- 126 (268)
T 3nok_A 52 ATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP-- 126 (268)
T ss_dssp CTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTT--
T ss_pred CCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcC--
Confidence 334556788887 4667778888899999999999988776 22 2333322233444 4444557899999999886
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
+.+.++..- ..-+.++ ++++.|+.+..++.|.++|..+.+.+..+........-..++.+.|. +|.+++....++
T Consensus 127 -~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 127 -QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp -EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred -cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 556655432 2224444 46788887778999999999999988887643211112245667776 777666666788
Q ss_pred cEEEEECCCCceeeEecCC-------------CCCeEEEEECCCCCEEEEEeCC
Q 009763 380 LVKIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.|.+.|..+++.+..+... ..-.+.|+|+|++..|++.+..
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 9999999999988777421 1356899999987666666544
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=3.7e-06 Score=80.46 Aligned_cols=233 Identities=10% Similarity=0.019 Sum_probs=142.6
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-c------------------cccceeEEEEec-CCCEEEEEeC
Q 009763 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-G------------------HSKKVTSVKFVT-EGDLFLTGSA 285 (526)
Q Consensus 226 I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~-~------------------h~~~V~~l~~~~-~~~~l~s~s~ 285 (526)
-.++++++++++++++..++.|..|+..++....... . ....+..+++.+ +++ |+.+..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 4577889999878888889999999987654432111 0 113578899997 565 555544
Q ss_pred CCcEEEEeCCCCCceeeeEe-ccc-CccceEEEEEec-CCCEEEEEEC-----------------CCeEEEEeCCCCeEE
Q 009763 286 DKTVRVWQGSEDGNYDCKHT-LKD-HTAEVQAVTVHA-TNKYFVTASL-----------------DNTWCFYDLSSGICL 345 (526)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~-~~~-h~~~v~~l~~~p-~~~~l~s~s~-----------------dg~i~iwd~~~~~~~ 345 (526)
.+.|..+|..++. ...+.. ..+ .......+++.+ +|+++++-.. ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 4558888876431 111111 111 113478899999 8987776432 367999998877643
Q ss_pred EEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECCCCCEEEEEeC---
Q 009763 346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAH--- 419 (526)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--- 419 (526)
...... .....++++++++.|+++ ...+.|..|++.... ....+....+ ...+++.++|++.++...
T Consensus 179 ~~~~~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 179 LLLKEL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp EEEEEE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred EeccCC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccc
Confidence 332211 235679999999866655 556889999987421 1112211223 788999999987666544
Q ss_pred -------Cc-EEEEEcCCCccceEEecCCC--CCCeeEEEEcCCCCEEEEEeCC--eEEEEE
Q 009763 420 -------DG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (526)
Q Consensus 420 -------d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 469 (526)
.+ |..+|.. ++.+..+..... ...+..+.+. ++.++++...+ +.++++
T Consensus 252 ~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp SSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC
T ss_pred ccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEec
Confidence 23 8888864 666666654321 1346666663 44444433333 666654
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=1.9e-06 Score=91.12 Aligned_cols=237 Identities=13% Similarity=0.151 Sum_probs=149.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccc----cceeE-EEEecCCCEEEEEeC------CCcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS----KKVTS-VKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~----~~V~~-l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~ 303 (526)
+..|++++.|+.|..+|..+|+.+..+.... ..+.+ ... .++ .++++.. +|.|..||..++. .+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~ 191 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGK---LA 191 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCC---EE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCc---EE
Confidence 5678888889999999999999988776421 11111 111 134 4555443 5899999998874 33
Q ss_pred Eeccc---C----------------------------ccceEEEEEecCCCEEEEEECCC-------------------e
Q 009763 304 HTLKD---H----------------------------TAEVQAVTVHATNKYFVTASLDN-------------------T 333 (526)
Q Consensus 304 ~~~~~---h----------------------------~~~v~~l~~~p~~~~l~s~s~dg-------------------~ 333 (526)
..+.. . ......+++.|.+..++.++.++ .
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 32211 0 01112467888888888887776 4
Q ss_pred EEEEeCCCCeEEEEeecCCCCC----CCCCeeEEEEccCCc---EEEEEeCCCcEEEEECCCCceeeEecCCC-------
Q 009763 334 WCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV------- 399 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------- 399 (526)
|..+|..+|+.+..+....... ...+.....+..+|. .++.++.+|.++++|..+++.+.......
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 351 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence 9999999999988876431111 112333334444675 78899999999999999998874432111
Q ss_pred ----C-C------------------------eEEEEECCCCCEEEEEe--------------------------------
Q 009763 400 ----G-A------------------------VTAISFSENGYYLATAA-------------------------------- 418 (526)
Q Consensus 400 ----~-~------------------------i~~l~~s~~~~~l~~~~-------------------------------- 418 (526)
+ + -..++++|+...+++..
T Consensus 352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (668)
T 1kv9_A 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (668)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence 0 0 01267777766655421
Q ss_pred ----CCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeec
Q 009763 419 ----HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 419 ----~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 483 (526)
.++ |..||+.+++....+... .+.....+...+.++++++.+ +++|+. .+.+.+..+.
T Consensus 432 p~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~----~tG~~l~~~~ 496 (668)
T 1kv9_A 432 PAAVVSGALLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSA----DKGEALWQFE 496 (668)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEE
T ss_pred CCCCccceEEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhh----hcChhheEec
Confidence 125 999999999987776653 233333444568888888877 666665 3344444443
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.83 E-value=1.8e-06 Score=77.48 Aligned_cols=189 Identities=12% Similarity=0.016 Sum_probs=129.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCc
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGN 299 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~ 299 (526)
......+.|+. +.++.+.+.+| .|+.+|+.+++.+..+..... .........++ +.+....++.+.+||..+.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl-- 95 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATL-- 95 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTT--
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcC--
Confidence 45677899986 56666666654 899999999999888764332 22222222344 4444557899999999886
Q ss_pred eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
+.+.++... ..-+.++ +++..|+.+..++.|.++|..+.+.+..+........-..++.+.+. +|.+++....+.
T Consensus 96 -~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 96 -TPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp -EEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred -cEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence 566665532 2224444 46777777777899999999999888887642111111345566665 777776666788
Q ss_pred cEEEEECCCCceeeEecCC-------------CCCeEEEEECCCCCEEEEEeCC
Q 009763 380 LVKIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD 420 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~d 420 (526)
.|.+.|.++++.+..+... ..-.+.|+++|++..|++.+..
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999999999988876421 1356899999988777777655
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=3.7e-05 Score=83.02 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=171.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec---------ccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~---------~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 293 (526)
...|.++....+|. |..|+.++-|..|+...+....... .....|.++...++|. |..|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 45799999988876 4456667778889887654332211 1235688998887777 45566566688898
Q ss_pred CCCCCceeeeEec----ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 294 GSEDGNYDCKHTL----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 294 ~~~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
..+. ....+ ......|.++...+++.+.+ |+.++-+..+|..+++... +... ......|.++...++|
T Consensus 390 ~~~~----~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~--~~~~~~v~~i~~d~~g 461 (781)
T 3v9f_A 390 NGKR----VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELE--KNELLDVRVFYEDKNK 461 (781)
T ss_dssp TTEE----EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCST--TTCCCCEEEEEECTTS
T ss_pred CCCC----eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccC--CCCCCeEEEEEECCCC
Confidence 7542 11111 12345789998887776544 6777789999988775433 2211 1223578899888888
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEecCC-----CCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCC--CC
Q 009763 370 LILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD--SE 442 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~--~~ 442 (526)
.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+....+||..||..+.+. ..+.... ..
T Consensus 462 ~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~ 538 (781)
T 3v9f_A 462 KIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCS 538 (781)
T ss_dssp EEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSC
T ss_pred CEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCC
Confidence 7554 444 56889998776543322211 3579999999888766655446798899876543 2332211 13
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 443 TPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
..|.++..+++|.+.+... ++-++.++.............+. ....|.++...++|.+.+ ++.+| |..|+..
T Consensus 539 ~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl-~~~~i~~i~~d~~g~lW~-~t~~G-l~~~~~~ 610 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGL-PNTHIRAISEDKNGNIWA-STNTG-ISCYITS 610 (781)
T ss_dssp SCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTC-SCCCCCEEEECSSSCEEE-ECSSC-EEEEETT
T ss_pred CeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCC-CCceEEEEEECCCCCEEE-EcCCc-eEEEECC
Confidence 5688999999998776655 53223333322333332222222 134678888888887555 44555 5555543
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.78 E-value=2.8e-07 Score=97.48 Aligned_cols=270 Identities=12% Similarity=0.086 Sum_probs=155.2
Q ss_pred EEEecC-CCCEEEEEeCCC-----------cEEEEeCCCCcE--EEEec-ccccceeEEEEecCCCEEEEEeC-CCcEEE
Q 009763 228 SLDIHY-SKDVIATGGVDT-----------NAVLFDRPSGQI--VTTLS-GHSKKVTSVKFVTEGDLFLTGSA-DKTVRV 291 (526)
Q Consensus 228 ~~~~s~-~~~~l~t~~~dg-----------~v~vwd~~~~~~--~~~~~-~h~~~V~~l~~~~~~~~l~s~s~-dg~i~i 291 (526)
++++.+ ++++++.|+.++ .+.+||..+++- +..+. .+.....++++..++.+++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 888888887643 588999887643 22222 23333445777889999999984 568999
Q ss_pred EeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CC-----CeEEEEeCCCCeEEEEe----ecCCCCCCCCCee
Q 009763 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LD-----NTWCFYDLSSGICLTQV----SDAGTDGRPEGYT 361 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~----~~~~~~~~~~~v~ 361 (526)
||..+. .+..+..+... ..-.++...+++++++.|+ .+ ..+.+||..++.....- .......+
T Consensus 270 yd~~t~-~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~----- 342 (656)
T 1k3i_A 270 YDSSSD-SWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK----- 342 (656)
T ss_dssp EEGGGT-EEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-----
T ss_pred ecCcCC-ceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-----
Confidence 998763 33333322211 1223455667899999988 34 56999999988754431 00000000
Q ss_pred EEEEccCCcEEEEEeCCC---------cEEEEECCCCceeeEecCCC---------CCeEEEEECC-CCCEEEEEeCC--
Q 009763 362 SAAFHPDGLILGTGTSEA---------LVKIWDVKSQANVAKFDGHV---------GAVTAISFSE-NGYYLATAAHD-- 420 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg---------~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~-~~~~l~~~~~d-- 420 (526)
...+..++.+++.|+.+| .+..||..+........... ..-.++.|.. ++++++.|+.+
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 011223555555555443 56788887765333222111 1224444433 67777777631
Q ss_pred ----------cEEEEEcCCCccceEE-ecCCCCCCeeEEEEcCCCCEEEEEeCC-------------eEEEEEecccCcc
Q 009763 421 ----------GVKLWDLRKLKNFRSF-ESSDSETPTNSVDFDHSGSYLAVASAD-------------IRVYQVASVKADW 476 (526)
Q Consensus 421 ----------~i~iwd~~~~~~~~~~-~~~~~~~~i~~i~~s~~~~~l~~~~~d-------------i~v~~~~~~~~~~ 476 (526)
.|.+||..+..-.... ........-.+++..|+|+++++|+.+ +.+|+.. ...|
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~--t~~W 500 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--QDTF 500 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--GTEE
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC--CCce
Confidence 2567777665433221 011112223455677899999998732 6667653 3566
Q ss_pred eeeeeecCCCCCcceEEEEEcCCCCEEEEEeC
Q 009763 477 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 508 (526)
Q Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 508 (526)
..+...... .....+..+.++|++++.|+.
T Consensus 501 ~~~~~~~~~--R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 501 YKQNPNSIV--RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EECCCCSSC--CCTTEEEEECTTSCEEEEECC
T ss_pred eecCCCCCc--cccccHhhcCCCcEEEecCCC
Confidence 665544322 223345566789999999985
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=2.6e-05 Score=84.27 Aligned_cols=286 Identities=9% Similarity=0.021 Sum_probs=171.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--------------ccccceeEEEEecCCCEEEEEeCCCc
Q 009763 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--------------GHSKKVTSVKFVTEGDLFLTGSADKT 288 (526)
Q Consensus 223 ~~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~--------------~h~~~V~~l~~~~~~~~l~s~s~dg~ 288 (526)
...|.++...++|.+ ..|+..+-|.++|..++....... .....|.++...++|. |-.|+.++-
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 356999988877764 446654668889987655432111 1345689998888887 555666677
Q ss_pred EEEEeCCCCCceeeeEe-------cccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCee
Q 009763 289 VRVWQGSEDGNYDCKHT-------LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361 (526)
Q Consensus 289 i~iwd~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 361 (526)
|..|+..... +..... -......|.++...++|.+ ..|+.++-+..||..++.... +... .......|.
T Consensus 335 l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~-~~~~~~~v~ 410 (781)
T 3v9f_A 335 INFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIY-NKEN-RELLSNSVL 410 (781)
T ss_dssp EEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEEC-C------CCCSBEE
T ss_pred EEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEE-ccCC-CCCCCcceE
Confidence 8889876532 111110 0112356899988877764 456666678889987553321 1110 112335788
Q ss_pred EEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec--CCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecC
Q 009763 362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 362 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~ 439 (526)
++...++|.+.+ |+.++-|..||..+++...... .....|.++...++|.+.+ |+.+||..||..+++........
T Consensus 411 ~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 411 CSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp EEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTT
T ss_pred EEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCc
Confidence 998888877554 6666778999987765332211 1345799999988876554 45577999998876543332211
Q ss_pred ---CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 440 ---DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 440 ---~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
.....|.++..+++|.+.+..... +..|+. ....+......... ....|.++...++|.+.+ |+.+|.|..|
T Consensus 489 ~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~--~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWi-~T~~Glv~~~ 564 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTP--DMQLVRKFNQYEGF-CSNTINQIYRSSKGQMWL-ATGEGLVCFP 564 (781)
T ss_dssp TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECT--TCCEEEEECTTTTC-SCSCEEEEEECTTSCEEE-EETTEEEEES
T ss_pred ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeC--CCCeEEEccCCCCC-CCCeeEEEEECCCCCEEE-EECCCceEEE
Confidence 013568899999999877765433 655553 11222221111111 245789999988888555 4446655778
Q ss_pred eCCCC
Q 009763 516 GLPGN 520 (526)
Q Consensus 516 ~l~~~ 520 (526)
+...+
T Consensus 565 d~~~~ 569 (781)
T 3v9f_A 565 SARNF 569 (781)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 76543
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.74 E-value=2.7e-05 Score=73.79 Aligned_cols=231 Identities=14% Similarity=0.085 Sum_probs=137.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCC--cEEEEeCCCCCceee
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDC 302 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~ 302 (526)
....++|+++++++++...++.|..||... .....+. ....+..+++.++|+++++..... .|..++..++. ...
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~~~ 109 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VET 109 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-EEE
Confidence 567899999999888777889999999875 3433333 234688999999999766554332 36666665532 222
Q ss_pred eEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecC----CCCCCCCCeeEEEEccCCcEEEEE-e
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDA----GTDGRPEGYTSAAFHPDGLILGTG-T 376 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~g-~ 376 (526)
+..+. .......++..+.+..+++-..++.|.++|...+.. +...... ...........+ ++++..|+++ .
T Consensus 110 ~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 22222 122334555555554444444689999999876532 2111100 000111234445 7887655554 5
Q ss_pred CCCcEEEEECCC-Cce--eeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEc-
Q 009763 377 SEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD- 451 (526)
Q Consensus 377 ~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s- 451 (526)
..+.|..||+.. ++. ...+. .......++++++|+++++....+ |.+||.. ++.............+.+++|.
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 567899999874 321 11121 113456789999998766655555 9999975 4442221111113568899998
Q ss_pred --CCCCEEEEEeCC
Q 009763 452 --HSGSYLAVASAD 463 (526)
Q Consensus 452 --~~~~~l~~~~~d 463 (526)
|++..|++++..
T Consensus 265 ~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 265 TEGDCTAIYVVTNG 278 (306)
T ss_dssp STTTTTEEEEEECT
T ss_pred ccCCCCEEEEECCC
Confidence 888887776543
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.72 E-value=1e-05 Score=83.70 Aligned_cols=198 Identities=12% Similarity=0.100 Sum_probs=125.3
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEecccccc-----------eeEEEEecCCCE----EEEEeCCCcEEEEeCCCC
Q 009763 235 KDVIATGGV-DTNAVLFDR-PSGQIVTTLSGHSKK-----------VTSVKFVTEGDL----FLTGSADKTVRVWQGSED 297 (526)
Q Consensus 235 ~~~l~t~~~-dg~v~vwd~-~~~~~~~~~~~h~~~-----------V~~l~~~~~~~~----l~s~s~dg~i~iwd~~~~ 297 (526)
+..|++++. ++.|.-+|. .+|+.+..+...... ...+.+.|.+.. ++.++.|+.+.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 566777777 899999999 899998877643211 123455444444 888889999999999887
Q ss_pred CceeeeEecc--cCc--cceEE-EEEecCCCEEEEEE------CCCeEEEEeCCCCeEEEEeecCCCCC-----------
Q 009763 298 GNYDCKHTLK--DHT--AEVQA-VTVHATNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTDG----------- 355 (526)
Q Consensus 298 ~~~~~~~~~~--~h~--~~v~~-l~~~p~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~----------- 355 (526)
. .+.... .+. ..+.+ -.+. ++ .+++++ .+|.|..+|..+|+.+..+.......
T Consensus 142 ~---~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 E---TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp C---EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred C---EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 4 332221 111 01111 1111 34 455554 38999999999999988776432110
Q ss_pred ----------------------CCCCeeEEEEccCCcEEEEEeCC----------------CcEEEEECCCCceeeEecC
Q 009763 356 ----------------------RPEGYTSAAFHPDGLILGTGTSE----------------ALVKIWDVKSQANVAKFDG 397 (526)
Q Consensus 356 ----------------------~~~~v~~~~~~~~~~~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~ 397 (526)
....-...++.++..+++.++.+ +.|..+|.++++.+..++.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 00001245666777788887765 3799999999998877754
Q ss_pred CC----------CCeEEEEEC-CCC---CEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 398 HV----------GAVTAISFS-ENG---YYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 398 ~~----------~~i~~l~~s-~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
.. .++. +... .+| ..++.++.++ +.++|.++++.+.....
T Consensus 297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL 351 (599)
T ss_dssp STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccc
Confidence 21 1121 2222 467 5677777888 99999999988766553
No 272
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=1.8e-05 Score=81.85 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=121.5
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEeccccc-c---------e-eEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 235 KDVIATGGV-DTNAVLFDR-PSGQIVTTLSGHSK-K---------V-TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 235 ~~~l~t~~~-dg~v~vwd~-~~~~~~~~~~~h~~-~---------V-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
+..+++++. ++.|.-+|. .+|+.+..+..... . + ..+.. .+..++.++.|+.+..+|..++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~--- 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK--- 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC---
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC---
Confidence 556666776 899999999 89999887653221 0 0 11233 35678888899999999998873
Q ss_pred eeEecc--cCcc--ceEE-EEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCC----------------
Q 009763 302 CKHTLK--DHTA--EVQA-VTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTD---------------- 354 (526)
Q Consensus 302 ~~~~~~--~h~~--~v~~-l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~---------------- 354 (526)
.+..+. .+.. .+.+ ... .+..++.++. ++.|..+|..+++.+..+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 332222 2110 1111 111 1345555554 799999999999998877632110
Q ss_pred -----------------CCCCCeeEEEEccCCcEEEEEeCC----------------CcEEEEECCCCceeeEecCC---
Q 009763 355 -----------------GRPEGYTSAAFHPDGLILGTGTSE----------------ALVKIWDVKSQANVAKFDGH--- 398 (526)
Q Consensus 355 -----------------~~~~~v~~~~~~~~~~~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~~--- 398 (526)
+.......+++.++...++.++.+ +.|..+|.++++.+..++..
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 000001235667766677766542 35999999999988777532
Q ss_pred -------CCCeEEEEECCCCC---EEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 399 -------VGAVTAISFSENGY---YLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 399 -------~~~i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
..++. +....+|+ .++.++.++ +.++|..+++.+..+..
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 11221 22223674 567777777 99999999988766654
No 273
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=3.4e-08 Score=71.23 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=49.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+.+.+||+...+||+|.+.+|.+|++.+.+||++..+++.+|+++.
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 36999999999999975699999999999999999999999999999998876
No 274
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.64 E-value=1e-05 Score=83.63 Aligned_cols=256 Identities=13% Similarity=0.064 Sum_probs=150.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccc--c--ceeE-EEEecCCCEEEEEeC------CCcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS--K--KVTS-VKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~--~--~V~~-l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~ 303 (526)
+..+++++.|+.+..+|..+|+.+..+.... . .+.+ ... .++ .+++++. +|.|..+|..++. .+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~ 189 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGE---LK 189 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCC---EE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCc---EE
Confidence 5678888889999999999999987665321 0 1221 111 144 5555554 7899999998874 33
Q ss_pred EecccCcc-------------------------------------ce-EEEEEecCCCEEEEEECC--------------
Q 009763 304 HTLKDHTA-------------------------------------EV-QAVTVHATNKYFVTASLD-------------- 331 (526)
Q Consensus 304 ~~~~~h~~-------------------------------------~v-~~l~~~p~~~~l~s~s~d-------------- 331 (526)
..+..... .+ ..+++.+....++.+..+
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence 22221100 00 135667766677666532
Q ss_pred --CeEEEEeCCCCeEEEEeecCCCC-----CCCCCeeEEEEccCCc---EEEEEeCCCcEEEEECCCCceeeEecCCC--
Q 009763 332 --NTWCFYDLSSGICLTQVSDAGTD-----GRPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV-- 399 (526)
Q Consensus 332 --g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-- 399 (526)
+.|..+|..+++.+..+...... ....++ -+....+|+ .++.++.+|.++++|..+++.+..+....
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 36999999999988877643111 111222 233335774 67788999999999999998876654211
Q ss_pred -----------CCe--------------------------EEEEECCCCCEEEEEeC-----------------------
Q 009763 400 -----------GAV--------------------------TAISFSENGYYLATAAH----------------------- 419 (526)
Q Consensus 400 -----------~~i--------------------------~~l~~s~~~~~l~~~~~----------------------- 419 (526)
.++ ..++|+|+..++++...
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 111 23578887667666532
Q ss_pred --------------Cc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecccCcceeeeee
Q 009763 420 --------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482 (526)
Q Consensus 420 --------------d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~ 482 (526)
++ |..||+.+++....+.... .+....+...+..+++++.+ +.+++. .+.+.+..+
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~----~tG~~lw~~ 501 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDN----KDGKELWNF 501 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEET----TTCCEEEEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEEC----CCCCEEEEE
Confidence 35 9999999998877766532 22222223346677778777 566665 334444444
Q ss_pred cCCCCCcceEEEEEcCCCCEEE
Q 009763 483 PDLSGTGKATCVKFGPDAKYIA 504 (526)
Q Consensus 483 ~~~~~~~~v~~~~~s~~~~~l~ 504 (526)
.... ...-..+.+..+|+.++
T Consensus 502 ~~~~-~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 502 KMPS-GGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp ECSS-CCCSCCEEEEETTEEEE
T ss_pred eCCC-CcEeeeEEEEECCEEEE
Confidence 3221 11111233556776444
No 275
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.64 E-value=2.8e-08 Score=75.74 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=45.0
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCCCCCCC-CcCcccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPVTGEPL-TMDDIVP 52 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~-~~~~~~~ 52 (526)
+.|+|+.+++.+||+.|.|||+|++.+|++|+.+++ +||+++.++ ..++|.+
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEE
T ss_pred CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCc
Confidence 469999999999999976999999999999998776 899999997 4555543
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.64 E-value=9.4e-06 Score=87.10 Aligned_cols=194 Identities=9% Similarity=0.017 Sum_probs=115.5
Q ss_pred CeEEEEec-CCCCEEEEEeC-CC----cEEEEeCCCC-cEEE-EecccccceeEEEEecCCCEEEEEeCC-----CcEEE
Q 009763 225 GIVSLDIH-YSKDVIATGGV-DT----NAVLFDRPSG-QIVT-TLSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRV 291 (526)
Q Consensus 225 ~I~~~~~s-~~~~~l~t~~~-dg----~v~vwd~~~~-~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~i 291 (526)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+ ......+.|+|||+.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886543 23 4999999988 6321 11 1124578999999877776654 35788
Q ss_pred EeCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEEC---CCeEEEEeCCCCe-EE--EEeecCCCCCCCCCeeEEE
Q 009763 292 WQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGI-CL--TQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 292 wd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~~~~~~~~~~~~v~~~~ 364 (526)
+++.++.. .....+. ........+.|+|+|++|+..+. ...|.++|+.++. .. ..+.. ........+.
T Consensus 252 ~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~----~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP----REKGVRYDVQ 326 (751)
T ss_dssp EETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC----CCTTCCEEEE
T ss_pred EECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec----CCCCceEEEe
Confidence 88866421 1112222 22344668899999998877653 3468889988752 12 22321 2223455666
Q ss_pred EccCCcEEEEEeCC----CcEEEEECCCCceeeE-ecCCCC--CeEEEEECCCCCEEEEEeCCc---EEEEEc
Q 009763 365 FHPDGLILGTGTSE----ALVKIWDVKSQANVAK-FDGHVG--AVTAISFSENGYYLATAAHDG---VKLWDL 427 (526)
Q Consensus 365 ~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~-~~~~~~--~i~~l~~s~~~~~l~~~~~d~---i~iwd~ 427 (526)
|+.++.+++....+ ..|..+|+.++..... +..+.. .+..+.+. .+.++++...++ |.++|+
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 66555555555544 3577777764322222 222322 45566665 344555555555 777786
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=1.8e-05 Score=81.92 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=98.1
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEeccccc----ceeE-EEEecCCCEEEEEe------CCCcEEEEeCCCCCceeeeEec
Q 009763 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSK----KVTS-VKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 238 l~t~~~dg~v~vwd~~~~~~~~~~~~h~~----~V~~-l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~ 306 (526)
|++++.|+.+.-+|..+|+.+........ .+.+ ... .++ .+++++ .+|.|+.+|..++. .+..+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~---~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGE---QVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCC---EEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCc---EEEEE
Confidence 78888899999999999999876543220 1221 111 144 455554 37999999998874 33222
Q ss_pred ccCcc-------------------------------------ce-EEEEEecCCCEEEEEECC----------------C
Q 009763 307 KDHTA-------------------------------------EV-QAVTVHATNKYFVTASLD----------------N 332 (526)
Q Consensus 307 ~~h~~-------------------------------------~v-~~l~~~p~~~~l~s~s~d----------------g 332 (526)
..... .+ ..+++.+....++.+..+ +
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence 21100 01 134566777777777665 3
Q ss_pred eEEEEeCCCCeEEEEeecCCCCC-----CCCCeeEEEEc-cCC---cEEEEEeCCCcEEEEECCCCceeeEec
Q 009763 333 TWCFYDLSSGICLTQVSDAGTDG-----RPEGYTSAAFH-PDG---LILGTGTSEALVKIWDVKSQANVAKFD 396 (526)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~ 396 (526)
.|..+|..+|+.+..+....... ...++ -+... .+| ..++.++.+|.++++|.++++.+....
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 89999999999988876432111 11112 22332 467 578888999999999999998876653
No 278
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=7.2e-08 Score=76.53 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=46.8
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC---CCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG---KCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+.+.+||++| |||+|++.+|.+|+..++ +||+++.+++.++|.+.
T Consensus 22 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp TSCSSSCCCCSSCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCcccChhhcCeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 46999999999999986 999999999999999764 89999999998877654
No 279
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=5e-05 Score=78.59 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=99.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccccc----cee-EEEEecC---CC-EEEEEe------CCCcEEEEeCCCCCc
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK----KVT-SVKFVTE---GD-LFLTGS------ADKTVRVWQGSEDGN 299 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~----~V~-~l~~~~~---~~-~l~s~s------~dg~i~iwd~~~~~~ 299 (526)
+..+++++.|+.|.-+|..+|+.+........ .+. ......+ ++ .+++++ .+|.|.-+|..++..
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 56788888899999999999999877653221 111 1111212 33 566654 378999999988642
Q ss_pred eeeeEecccCc-----------------------------------------cceEEEEEecCCCEEEEEEC--------
Q 009763 300 YDCKHTLKDHT-----------------------------------------AEVQAVTVHATNKYFVTASL-------- 330 (526)
Q Consensus 300 ~~~~~~~~~h~-----------------------------------------~~v~~l~~~p~~~~l~s~s~-------- 330 (526)
+....... ..-..+++.|....++.+..
T Consensus 197 ---~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 197 ---IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp ---EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred ---EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 22211100 00013566777777776663
Q ss_pred ------------C----CeEEEEeCCCCeEEEEeecCCCCC-----CCCCeeEEEEc-cCC---cEEEEEeCCCcEEEEE
Q 009763 331 ------------D----NTWCFYDLSSGICLTQVSDAGTDG-----RPEGYTSAAFH-PDG---LILGTGTSEALVKIWD 385 (526)
Q Consensus 331 ------------d----g~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~---~~l~~g~~dg~i~iwd 385 (526)
| +.|..+|..+|+.+..+....... ...++ -+... .+| ..++.++.+|.++++|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 689999999999988876421111 11122 22222 466 4788899999999999
Q ss_pred CCCCceeeEec
Q 009763 386 VKSQANVAKFD 396 (526)
Q Consensus 386 ~~~~~~~~~~~ 396 (526)
..+++.+..+.
T Consensus 353 ~~tG~~lw~~~ 363 (582)
T 1flg_A 353 RSNGKLQNAFP 363 (582)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCCEecccc
Confidence 99998876654
No 280
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.58 E-value=6.4e-08 Score=70.14 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=44.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhc--CCCCCCCCCCC-cCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY--GKCPVTGEPLT-MDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~-~~~~~~~ 53 (526)
+.|+|+.+++.+||+.|.+||+|++.+|.+|+.++ .+||++..++. .+.|++-
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 36999999999999997799999999999999987 48999999854 4444443
No 281
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.56 E-value=4.5e-05 Score=78.99 Aligned_cols=198 Identities=18% Similarity=0.121 Sum_probs=120.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecccccce---------eEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEe
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKV---------TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V---------~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (526)
+..+++++.++.|.-+|..+|+.+..+....... ..+.+ .+..++.++.|+.|.-+|..++. .+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~---~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGK---VVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCC---EEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCC---EEee
Confidence 4555556654459999999999988776432210 12222 35578888899999999998874 3322
Q ss_pred cc--cCcc--ceE-EEEEec---CCC-EEEEEE------CCCeEEEEeCCCCeEEEEeecCCC---------------CC
Q 009763 306 LK--DHTA--EVQ-AVTVHA---TNK-YFVTAS------LDNTWCFYDLSSGICLTQVSDAGT---------------DG 355 (526)
Q Consensus 306 ~~--~h~~--~v~-~l~~~p---~~~-~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~---------------~~ 355 (526)
.. .+.. .+. .-.+.. +++ .+++++ .+|.|.-+|..+|+.+........ .+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 22 1110 111 111111 223 555554 378999999999998876542100 00
Q ss_pred ---------------------CCCCeeEEEEccCCcEEEEEeC--------------------C----CcEEEEECCCCc
Q 009763 356 ---------------------RPEGYTSAAFHPDGLILGTGTS--------------------E----ALVKIWDVKSQA 390 (526)
Q Consensus 356 ---------------------~~~~v~~~~~~~~~~~l~~g~~--------------------d----g~i~iwd~~~~~ 390 (526)
....-...++.|+..+++++.. | +.|.-+|..+++
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 0001124567777777777663 2 579999999999
Q ss_pred eeeEecC--CC--------CCeEEEEEC-CCCC---EEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 391 NVAKFDG--HV--------GAVTAISFS-ENGY---YLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 391 ~~~~~~~--~~--------~~i~~l~~s-~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
.+..++. |. .++. +... .+|+ .++.++.++ ++++|..+++.+..+..
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 8887753 21 1221 2221 4663 677888888 99999999988766554
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.56 E-value=0.00047 Score=66.48 Aligned_cols=232 Identities=9% Similarity=-0.014 Sum_probs=138.9
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEE-EEeCCCcEEEEeCCCCCceee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDC 302 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~ 302 (526)
+..+|.+..+ ..+|+.+. ...|+..++........+.+ ...+..++|++.+..|+ +-...+.|..++..... .
T Consensus 34 d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~ 107 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---V 107 (349)
T ss_dssp TSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred CCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC---c
Confidence 4456777666 34454443 45688888876555444443 34578999997555544 44567889999987642 1
Q ss_pred eEecccCccceEEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-cEEEEEeCC-C
Q 009763 303 KHTLKDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSE-A 379 (526)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~d-g 379 (526)
...+.........+++.+.+..| ++-...+.|.+.++........+. ........++++|.+ .++++-... +
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-----~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----TTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-----CCCCCcceEEEecCcCeEEEeccCCCC
Confidence 11122222446788998755554 444556889999987654333222 112456899999954 455554444 7
Q ss_pred cEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEE
Q 009763 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 457 (526)
.|..+++........+.......+.++|+|++..|..+... + |..+|+..... ..+.... ......+++. +..|
T Consensus 183 ~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~-~~~P~giav~--~~~l 258 (349)
T 3v64_C 183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQG-LPHPFAITVF--EDSL 258 (349)
T ss_dssp EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-CSSEEEEEEE--TTEE
T ss_pred EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCC-CCCceEEEEE--CCEE
Confidence 88888876433222222234467899999877777666554 4 99999875333 3332211 3456778873 3355
Q ss_pred EEEeCC-eEEEEEe
Q 009763 458 AVASAD-IRVYQVA 470 (526)
Q Consensus 458 ~~~~~d-i~v~~~~ 470 (526)
+.+... .+|+.++
T Consensus 259 y~td~~~~~V~~~~ 272 (349)
T 3v64_C 259 YWTDWHTKSINSAN 272 (349)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEecCCCCeEEEEE
Confidence 555444 5555554
No 283
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.56 E-value=6.1e-08 Score=74.90 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=48.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+.+.+||+.+.|||+|++.+|.+|+..+.+||+++.+++.++|.+-
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcC
Confidence 46999999999999986699999999999999988999999999998776654
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.54 E-value=7.8e-05 Score=67.85 Aligned_cols=200 Identities=11% Similarity=0.142 Sum_probs=131.4
Q ss_pred CCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecc-cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 224 ~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
..+..++|+|+++ ++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.......
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 4699999999766 55567778999999998 888887642 22457788998888776776677889999887654322
Q ss_pred eeEecc------cCccceEEEEEecCCCEEEEEECCCeEEEEeCC---CCeEEEEeecC--CCCCCCCCeeEEEEcc-CC
Q 009763 302 CKHTLK------DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---SGICLTQVSDA--GTDGRPEGYTSAAFHP-DG 369 (526)
Q Consensus 302 ~~~~~~------~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~--~~~~~~~~v~~~~~~~-~~ 369 (526)
.+.... ........|+|+|.++.|+++.......+|.+. ....+...... ....+...+..++++| .+
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 122221 234457899999998777777665554555443 11112222110 0011234578999999 56
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEecCCC---------CCeEEEEECCCCCEEEEEeCCc-EEEEE
Q 009763 370 LILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLWD 426 (526)
Q Consensus 370 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~~~~~d~-i~iwd 426 (526)
.+++....+..+.++|.. ++.+..+.-.. .....|+|.++|++.++ +... ++.|.
T Consensus 186 ~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 777777888889999975 55555443221 26789999999986655 5555 66664
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.52 E-value=0.00062 Score=64.63 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=131.4
Q ss_pred EEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCC---eEEEEeecCCCCC
Q 009763 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSG---ICLTQVSDAGTDG 355 (526)
Q Consensus 280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~---~~~~~~~~~~~~~ 355 (526)
|+.+.. ..|+..|+.... ....+. ....+..++|++.++.|+.+. .++.|..+++... .....+.. .
T Consensus 4 ll~~~~-~~I~~i~~~~~~---~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~ 74 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSE---YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----R 74 (316)
T ss_dssp EEEECB-SSEEEEETTSCC---CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----S
T ss_pred EEEECC-CeEEEEECCCcc---eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----C
Confidence 444333 568999987752 222222 335678999998766665554 4689999998761 22222211 1
Q ss_pred CCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC-C-c-EEEEEcCCCc
Q 009763 356 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-D-G-VKLWDLRKLK 431 (526)
Q Consensus 356 ~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d-~-i~iwd~~~~~ 431 (526)
.......+++.+ +++++++-...+.|.++|+........+.........++++|.+..|+.+.. . + |..+++.. .
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~ 153 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V 153 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-C
Confidence 113457889987 4555566567789999998754433333333456789999986555544443 2 4 88888753 3
Q ss_pred cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC
Q 009763 432 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 508 (526)
Q Consensus 432 ~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 508 (526)
....+... .......+++++++..|+.+... |..++++ ......+..... .......+++. .+.++++-..
T Consensus 154 ~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~--~~~~P~giav~-~~~ly~~d~~ 227 (316)
T 1ijq_A 154 DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDII 227 (316)
T ss_dssp CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTT--TTSSEEEEEEE-TTEEEEEETT
T ss_pred CeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCC--ccCCcEEEEEE-CCEEEEEECC
Confidence 33333221 13567899999998888887765 5555542 222222222111 13356778885 3455555556
Q ss_pred CCcEEEeeCCCC
Q 009763 509 DRNLRVFGLPGN 520 (526)
Q Consensus 509 dg~v~iw~l~~~ 520 (526)
.+.|..++..++
T Consensus 228 ~~~V~~~~~~~g 239 (316)
T 1ijq_A 228 NEAIFSANRLTG 239 (316)
T ss_dssp TTEEEEEETTTC
T ss_pred CCeEEEEeCCCC
Confidence 678888876433
No 286
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.52 E-value=6.2e-08 Score=68.11 Aligned_cols=52 Identities=19% Similarity=0.393 Sum_probs=47.4
Q ss_pred CcccccCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+.+.+| ++. .+||+|.+.+|++|++.+.+||++..+++.++++++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 3699999998887 666 599999999999999999999999999999999886
No 287
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=73.10 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=48.5
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+.+.+||+...|||+|++.+|.+|+... .+||++..+++.++|+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh
Confidence 46999999999999934699999999999999998 589999999999999877
No 288
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=5e-08 Score=68.99 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=43.7
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHH-hcCCCCCCCCCCCcCcc
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHIL-DYGKCPVTGEPLTMDDI 50 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~ 50 (526)
.|+|+.+.+.+||++ .+||+|++.+|.+|++ .+.+||+++.+++.+++
T Consensus 17 ~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 17 KCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp ECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 599999999999998 4999999999999995 45789999999998876
No 289
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.47 E-value=0.00095 Score=63.32 Aligned_cols=223 Identities=7% Similarity=-0.021 Sum_probs=130.8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCCc-eeeeEecccCccceE
Q 009763 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQ 314 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~ 314 (526)
+|+.+. ...|+..|+........+. ....+..++|++.+.. +++-..++.|..++..+... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3568889988776655554 3456789999986554 45555678999999875100 011111222224567
Q ss_pred EEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-C-CcEEEEECCCCce
Q 009763 315 AVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-E-ALVKIWDVKSQAN 391 (526)
Q Consensus 315 ~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-d-g~i~iwd~~~~~~ 391 (526)
.+++.+.+..| ++-...+.|.++|+........+.. .......++++|.+..|+.+.. . +.|..+++.. ..
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 154 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence 89998755544 4445678999999876543333321 1235789999995554444443 3 6888888753 33
Q ss_pred eeEe-cCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEec-CCCCCCeeEEEEcCCCCEEEEEeCC-eEE
Q 009763 392 VAKF-DGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD-IRV 466 (526)
Q Consensus 392 ~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d-i~v 466 (526)
...+ ...-...+.+++++++..|+.+... + |..+|+... ....+.. .........++++. ..++.+... .+|
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V 231 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAI 231 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEE
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeE
Confidence 3333 2234567899999887777666654 3 999998743 3333322 11133467788853 445544443 455
Q ss_pred EEEe
Q 009763 467 YQVA 470 (526)
Q Consensus 467 ~~~~ 470 (526)
+.++
T Consensus 232 ~~~~ 235 (316)
T 1ijq_A 232 FSAN 235 (316)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 290
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.47 E-value=9.5e-08 Score=68.74 Aligned_cols=52 Identities=19% Similarity=0.393 Sum_probs=47.1
Q ss_pred CcccccCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
..|+|+.+.+.+| ++. .+||+|.+.+|.+|++.+.+||++..+++.++++++
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 3699999998887 565 599999999999999999999999999999999876
No 291
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.46 E-value=1.6e-07 Score=78.21 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=43.4
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCcC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMD 48 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~ 48 (526)
+.|+|+.+++.+||++| |||+|++.+|.+|+.... +||+|..+++.+
T Consensus 79 ~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46999999999999985 999999999999999765 799999999977
No 292
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.46 E-value=1.3e-07 Score=75.56 Aligned_cols=52 Identities=35% Similarity=0.483 Sum_probs=47.7
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+++.+||+++ +||+|++.+|.+|+...+ +||+++.+++.+++++-
T Consensus 19 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 19 YECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp GBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCcCChhhcCeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 36999999999999985 999999999999999887 99999999998887765
No 293
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.9e-07 Score=69.05 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=42.2
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
+.|+|+.+.+.+||++| |||+|++.+|.+|++...+||+++.++.
T Consensus 16 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNPVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSEEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCeeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 46999999999999985 9999999999999999999999999986
No 294
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.46 E-value=1.9e-07 Score=69.95 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=48.2
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh------cCCCCCCCCCCCcCcccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD------YGKCPVTGEPLTMDDIVPIK 54 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~ 54 (526)
+.|+|+.+.+.+||+.| |||+|++.+|.+|+.. ..+||++..+++.++|.+..
T Consensus 20 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 20 VTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp TSCTTTCSCCSSCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred CCCcCCChhhCcceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 36999999999999986 9999999999999998 66899999999998887763
No 295
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=0.0003 Score=64.01 Aligned_cols=204 Identities=14% Similarity=0.209 Sum_probs=130.3
Q ss_pred EecccccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEECCCeEEEE
Q 009763 260 TLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFY 337 (526)
Q Consensus 260 ~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (526)
.+.+-...+..++|+|+++. +++...++.|...|.. + +.+..+. +-....-.|++.+++.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g---~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G---DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C---CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C---CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 45566678999999997664 5557778888888887 3 3444432 122467888998888877776677899999
Q ss_pred eCCCCeE---EEEeecC-CCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECC---CCceeeEec-------CCCCCeE
Q 009763 338 DLSSGIC---LTQVSDA-GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK---SQANVAKFD-------GHVGAVT 403 (526)
Q Consensus 338 d~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~~-------~~~~~i~ 403 (526)
++..... +...... ...........++|+|++..|+++...+...+|.+. ....+..+. .+...+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8866542 2223211 112345668999999988777777665555555553 111122221 1234678
Q ss_pred EEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEecCCC-------CCCeeEEEEcCCCCEEEEEeCCeEEEEE
Q 009763 404 AISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASADIRVYQV 469 (526)
Q Consensus 404 ~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~di~v~~~ 469 (526)
+++++|....|.+.+.. . +..+|.. ++....+..... -...-.|+|+++|++.++ ++.-.+|.+
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99999975555555554 4 8899966 555555554421 236789999999986655 544466665
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=6.5e-05 Score=74.78 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=97.4
Q ss_pred ceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC-C----eEEEEeCC
Q 009763 267 KVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N----TWCFYDLS 340 (526)
Q Consensus 267 ~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g----~i~iwd~~ 340 (526)
....++|+| ++..|+.+...+.|+.+|.... .+..+.........++|++++++|+.+... + .+.+++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE----YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT----EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC----EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 457899997 3555666655588999998764 222333344568899999999966666542 1 34444432
Q ss_pred CCeE-EEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEec-CCCCCeEEEEECCCCCEEEEE
Q 009763 341 SGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 341 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~ 417 (526)
.... ...+.. ......++++| ++.++++-..++.|..||...+....... ........++|+|+|++|+.+
T Consensus 214 g~~~~~~~l~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 214 SGFKVITELTK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp GTSCSEEEEEE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred Cceeeeeeecc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 2111 112211 12456788999 77877777778899999998665422222 122457899999999977666
Q ss_pred eCC-c-EEEEEcCC
Q 009763 418 AHD-G-VKLWDLRK 429 (526)
Q Consensus 418 ~~d-~-i~iwd~~~ 429 (526)
... . |..++...
T Consensus 288 d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 288 VVNQHYILRSDYDW 301 (430)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ECCCCEEEEEeCCc
Confidence 554 3 88887653
No 297
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.43 E-value=2.1e-07 Score=75.10 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=42.2
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTM 47 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~ 47 (526)
+.|+|+.+.+.+||+.| |||+|++.+|.+|+...+ +||+|..+++.
T Consensus 53 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46999999999999995 999999999999998665 89999999886
No 298
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.43 E-value=0.00023 Score=69.75 Aligned_cols=206 Identities=10% Similarity=-0.018 Sum_probs=129.1
Q ss_pred CCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCCcee
Q 009763 224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 224 ~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
.....++|++.+. ++++-...+.|..++...+.....+.........+++.+.+ .++++-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence 3578899997655 55555567889999988665544444333456788998754 445555567788888876532
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEEC-C-CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCC
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASL-D-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE 378 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~d 378 (526)
....+.........++++|.+..|+.+.. . +.|..+++.......... ........++|+|++..|+.+ ...
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-----THLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----SSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-----CCCCCeeeEEEeCCCCEEEEEECCC
Confidence 12222233356789999997776666654 3 678888887543333222 112356899999865555544 456
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
+.|..+|+........+.........+++. .+.++++....+ |..+|..+++....+..
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 268 HVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 789999986443333333334567788883 444444444444 88888767766666653
No 299
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.43 E-value=0.0005 Score=67.27 Aligned_cols=223 Identities=9% Similarity=-0.001 Sum_probs=133.4
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRP 357 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 357 (526)
+|+.+ ....|+.+++.... ....+. ....+..++|++.+..|+.+. ..+.|..+++........+... .
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~---~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-----~ 158 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSE---YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-----L 158 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCC---CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-----C
T ss_pred eeEee-cCccceeeccCCCc---EEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-----C
Confidence 44443 34578888887642 222222 334578999998666665554 5688999999876544333211 1
Q ss_pred CCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe-CC-c-EEEEEcCCCccc
Q 009763 358 EGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HD-G-VKLWDLRKLKNF 433 (526)
Q Consensus 358 ~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d-~-i~iwd~~~~~~~ 433 (526)
.....+++.+ .+.++++-...+.|.++++........+.........++++|.+.+|+.+. .. + |..+++.....
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~- 237 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR- 237 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-
Confidence 2456788887 455556656677899988865443333443445689999998665555544 33 3 88888764433
Q ss_pred eEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 434 RSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
..+... .......++|+|++..|+.+... -+|+.++........+.. . .......+++. .+.++++-...+.|
T Consensus 238 ~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~--~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 238 RIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--Q--GLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp EEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC--S--SCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE--C--CCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 222221 13457899999988888887765 455555432222222211 1 13456778883 44555555567788
Q ss_pred EEeeCC
Q 009763 513 RVFGLP 518 (526)
Q Consensus 513 ~iw~l~ 518 (526)
..++..
T Consensus 312 ~~~~~~ 317 (386)
T 3v65_B 312 NSANKF 317 (386)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 888743
No 300
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.43 E-value=0.00064 Score=66.84 Aligned_cols=227 Identities=11% Similarity=0.011 Sum_probs=135.3
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCe----EEEEeecCCC
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGI----CLTQVSDAGT 353 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~----~~~~~~~~~~ 353 (526)
+|+.+. ...|+..++.... .... ......+..|+|++.+..|+.+. ..+.|..+++.... ....+.
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~---~~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---- 155 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE---YTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 155 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS---CEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----
T ss_pred eeEEec-cceeEEEccCCcc---eeEe-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----
Confidence 444444 3678888887642 1222 22345688999998776666655 46789999987522 222221
Q ss_pred CCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe-CC-c-EEEEEcCC
Q 009763 354 DGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HD-G-VKLWDLRK 429 (526)
Q Consensus 354 ~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d-~-i~iwd~~~ 429 (526)
........+++.+ .++++++-...+.|.+.++........+.........|++.|.+.+|+... .. . |...++..
T Consensus 156 -~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 156 -RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp -SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred -CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 1124577899998 566666666778999999876554444444445689999999655555544 32 3 88888865
Q ss_pred CccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeC
Q 009763 430 LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 508 (526)
Q Consensus 430 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 508 (526)
......+.. .......+++++++..|+.+... -+|+.++........+..... ......++++. .+.++++-..
T Consensus 235 ~~~~~~~~~--~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~--~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 235 VDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp CSCEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS--TTSSEEEEEEE-TTEEEEEESS
T ss_pred CccEEEEEC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC--CCCCCEEEEEe-CCEEEEecCC
Confidence 433222222 13568899999998888888765 444444332222222222111 13345677773 3344555556
Q ss_pred CCcEEEeeCCCC
Q 009763 509 DRNLRVFGLPGN 520 (526)
Q Consensus 509 dg~v~iw~l~~~ 520 (526)
.+.|..++..++
T Consensus 310 ~~~V~~~~~~~G 321 (400)
T 3p5b_L 310 NEAIFSANRLTG 321 (400)
T ss_dssp SCSEEEEESSSC
T ss_pred CCeEEEEEcCCC
Confidence 678888874443
No 301
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.42 E-value=0.00037 Score=67.23 Aligned_cols=206 Identities=10% Similarity=-0.015 Sum_probs=128.1
Q ss_pred CCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 224 PGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l-~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
.....++|++.+..| ++-...+.|..++...+.....+.........+++.+. +.++++-...+.|.+.+.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 347899999765544 45556788999998866544444433345678999875 4455555667889999987542
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEEC-C-CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCC
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASL-D-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE 378 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~d 378 (526)
....+...-.....++++|.+..++.+.. . +.|..+++........+. ........++++|++..|+.+ ...
T Consensus 150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-----THLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-----SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-----CCCCCcceEEEeCCCCEEEEEECCC
Confidence 11222233356789999997766665554 3 778888876543222221 112357899999866555554 456
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
+.|..+|+........+.........+++. .+.++++-...+ |..+|..+++....+..
T Consensus 225 ~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 225 HVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 789999986543333333334567788883 444444444444 88888666666665543
No 302
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=68.21 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=47.6
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
..|+|+.+.+.+||+.| +||+|.+.+|.+|+..+.+||++..++..++|+.-
T Consensus 16 ~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp CBCSSSSSBCSSEEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCccCCcccCCCEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 36999999999999996 99999999999999999999999999998877654
No 303
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=3.2e-05 Score=81.66 Aligned_cols=242 Identities=12% Similarity=0.091 Sum_probs=138.1
Q ss_pred EEEEec-CCCEEEEEeCCC-----------cEEEEeCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEEC-CCeEE
Q 009763 270 SVKFVT-EGDLFLTGSADK-----------TVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL-DNTWC 335 (526)
Q Consensus 270 ~l~~~~-~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~-dg~i~ 335 (526)
++++.+ ++++++.|+.++ .+.+||..++ .+..+..+. .+.....++++..++.+++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC-cEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 566777 888888887643 5889998874 333333332 23333445677789999999884 46899
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CC-----CcEEEEECCCCceeeEe----cCCCCCeEEE
Q 009763 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-----ALVKIWDVKSQANVAKF----DGHVGAVTAI 405 (526)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~i~~l 405 (526)
+||..++.....-.. .....-.++++.+++++++.|+ .+ ..+.+||..+++-...- ......-...
T Consensus 269 ~yd~~t~~W~~~~~~----~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDM----QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp EEEGGGTEEEECCCC----SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred EecCcCCceeECCCC----CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 999998865543211 1122334566778999999998 34 46999999876533210 0000000001
Q ss_pred EECCCCCEEEEEeCC----------cEEEEEcCCCccceEEecCCC-------CCCeeEEEEc-CCCCEEEEEeCC----
Q 009763 406 SFSENGYYLATAAHD----------GVKLWDLRKLKNFRSFESSDS-------ETPTNSVDFD-HSGSYLAVASAD---- 463 (526)
Q Consensus 406 ~~s~~~~~l~~~~~d----------~i~iwd~~~~~~~~~~~~~~~-------~~~i~~i~~s-~~~~~l~~~~~d---- 463 (526)
.+..+++.++.++.+ .+..||..+............ ...-..+.|. .+++++++|+.+
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 122344444444322 378888877653332221110 1122444554 367788887742
Q ss_pred -------eEEEEEecccCcceeee--eecCCCCCcceEEEEEcCCCCEEEEEeCC-----------CcEEEeeCCC
Q 009763 464 -------IRVYQVASVKADWNCIK--TFPDLSGTGKATCVKFGPDAKYIAVGSMD-----------RNLRVFGLPG 519 (526)
Q Consensus 464 -------i~v~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----------g~v~iw~l~~ 519 (526)
..++.++.....|..+. .+.. ...-.+++..+++++++.|+.+ ..+.+||...
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~---~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYF---ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSS---CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCC---CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 14555544455566553 2221 1122345667899999999865 4578888754
No 304
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.3e-07 Score=67.06 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=44.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh---cCCCCCCCCCCCcCcc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD---YGKCPVTGEPLTMDDI 50 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~ 50 (526)
+.|+|+.+.+.+||+.| +||+|++.+|.+|++. +.+||++..+++.+++
T Consensus 21 ~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 21 VICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CBCTTTCSBCSSEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CEeccCCcccCCeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 36999999999999995 9999999999999973 4589999999998876
No 305
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.41 E-value=0.0014 Score=64.38 Aligned_cols=225 Identities=7% Similarity=-0.041 Sum_probs=134.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEE-eCCCcEEEEeCCCCCce-eeeEecccCccce
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNY-DCKHTLKDHTAEV 313 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v 313 (526)
.+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|+.+++...... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3555444 4688889988665544444 45568899999865555444 45788988888652100 1122222234567
Q ss_pred EEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-C-CCcEEEEECCCCc
Q 009763 314 QAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-S-EALVKIWDVKSQA 390 (526)
Q Consensus 314 ~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~-dg~i~iwd~~~~~ 390 (526)
..+++.+.+. ++++-...+.|.+.+++.......+.. .......++++|.+..|+... . .+.|...++....
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 8899988554 444545678999999986654444431 123578999999655555444 2 4789999886443
Q ss_pred eeeEecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 009763 391 NVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVY 467 (526)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~ 467 (526)
....+...-...+.|++++++..|+.+... . |..+|+....................+++. +..|+..... -+|+
T Consensus 237 ~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 314 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEE
T ss_pred cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEE
Confidence 333333334578999999887777777654 3 999998754433333322222345667763 3444444443 4444
Q ss_pred EE
Q 009763 468 QV 469 (526)
Q Consensus 468 ~~ 469 (526)
.+
T Consensus 315 ~~ 316 (400)
T 3p5b_L 315 SA 316 (400)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 306
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00024 Score=70.66 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=97.6
Q ss_pred CeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC-CC----cEEEEeCCCCC
Q 009763 225 GIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK----TVRVWQGSEDG 298 (526)
Q Consensus 225 ~I~~~~~s~-~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg----~i~iwd~~~~~ 298 (526)
.-..++++| ++..|.++...+.|+.+|...+....... .......++|++++++|+.+.. ++ .+.+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-- 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-- 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence 346788998 45555555544889999998765544433 4556889999999996665554 22 233344322
Q ss_pred ceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE-EEEe
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~ 376 (526)
.+.....+. .......++++| ++.++++-..++.|..++...+......... .......++|+|+|++| ++-.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~----~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ----DSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS----SSSCCEEEEECTTSSEEEEEET
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC----CCCcceeEEEcCCCCEEEEEEC
Confidence 112111221 123456788999 6666666667789999999877653332211 11346789999999954 4445
Q ss_pred CCCcEEEEECC
Q 009763 377 SEALVKIWDVK 387 (526)
Q Consensus 377 ~dg~i~iwd~~ 387 (526)
..+.|..++..
T Consensus 290 ~~~~I~~~~~d 300 (430)
T 3tc9_A 290 NQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEeCC
Confidence 67789998765
No 307
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.40 E-value=0.00025 Score=70.57 Aligned_cols=237 Identities=11% Similarity=0.078 Sum_probs=135.3
Q ss_pred ceeEEEEecC--CCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC-----eEEEEeC
Q 009763 267 KVTSVKFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDL 339 (526)
Q Consensus 267 ~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~ 339 (526)
....++|+|+ +..|+.+...+.|+.+|..++ . +..+.........++++++|+ |+.+...+ .+..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~-v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---Y-VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---E-EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---E-EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 4568999984 344555544488999998664 2 233333445689999999999 44444322 2333333
Q ss_pred CCCeE-EEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEe-c-CCCCCeEEEEECCCCCEEE
Q 009763 340 SSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKF-D-GHVGAVTAISFSENGYYLA 415 (526)
Q Consensus 340 ~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~-~~~~~i~~l~~s~~~~~l~ 415 (526)
..+.. ...+.. ......++++| +|.++++-..++.|+.+|..++.....+ . +....-..++|+|+|.+|+
T Consensus 215 ~~~~~~~~~~~~------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 215 ASGFTERLSLCN------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp GGTTCCEEEEEE------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred CCCeeccccccc------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 22111 011110 12456788999 7777767667788999999877652222 2 1222335799999999776
Q ss_pred EEeCC-c-EEEEEcCC--Ccc--ceEEecC-C------------CCCCeeEEEE---------cCCCCEEEEEeCCeEEE
Q 009763 416 TAAHD-G-VKLWDLRK--LKN--FRSFESS-D------------SETPTNSVDF---------DHSGSYLAVASADIRVY 467 (526)
Q Consensus 416 ~~~~d-~-i~iwd~~~--~~~--~~~~~~~-~------------~~~~i~~i~~---------s~~~~~l~~~~~di~v~ 467 (526)
.+... . |+.+|+.. +.. ...+... . .-.....+++ +++|.++++-..+-+|+
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 66655 3 88888652 221 1122111 0 0124667899 67776666555444444
Q ss_pred EEecccCcceeeeeecCC----------------CCCcceEEEEEc-CCCCEEEEEeCCCcEEEeeCC
Q 009763 468 QVASVKADWNCIKTFPDL----------------SGTGKATCVKFG-PDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~s-~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.++. ..... ++.+. ..-.....++++ ++|.++++=...+.|+.++++
T Consensus 369 ~~~~---~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP---EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT---TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC---CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4432 22211 11111 002347889999 566655555567788888764
No 308
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.40 E-value=2e-07 Score=76.77 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=42.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
+.|+|+.+.+.+||+.| |||+|++.+|.+|+..+.+||+|..++.
T Consensus 54 ~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSSEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCCceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 36999999999999997 9999999999999999999999998875
No 309
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.40 E-value=3.1e-07 Score=73.19 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=47.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+++.+||++| +||+|++.+|.+|+.. ..+||+++.+++.++|++.
T Consensus 24 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 24 ISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp TBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCcHhcCcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 46999999999999985 9999999999999998 5689999999998887654
No 310
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2.8e-07 Score=69.00 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=47.5
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh------cCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD------YGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+.+.+|++.| |||+|++.+|.+|+.. ..+||++..+++.++|.+.
T Consensus 20 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCTTTCSCCSSCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred CCCCCCCcccCCceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 46999999999999995 9999999999999998 6799999999999887765
No 311
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.38 E-value=3.9e-07 Score=77.66 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=42.9
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCcC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMD 48 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~ 48 (526)
.|+|+.+.+.+||+.+.|||+|++.||.+|+.. +.+||+|+.+++..
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 699999999999998669999999999999997 67899999998643
No 312
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.36 E-value=3.8e-07 Score=71.62 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=44.4
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMD 48 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 48 (526)
+.|+|+.+.+.+||+...|||+|++.+|.+|+..+.+||+++.++...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 469999999999999856999999999999999999999999998865
No 313
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.35 E-value=0.0002 Score=67.75 Aligned_cols=194 Identities=14% Similarity=0.257 Sum_probs=126.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecC----CC---EEEEEe-C--CCcEEEEeCCCCCceeee
Q 009763 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GD---LFLTGS-A--DKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 234 ~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~----~~---~l~s~s-~--dg~i~iwd~~~~~~~~~~ 303 (526)
...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++.. . +++|.+|++.... ..+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cce
Confidence 3456666667788999999 7999988864 56777776652 22 233333 3 5789999774221 123
Q ss_pred Eeccc------Cc-cceEEEEE--ecC-CC-EEEEEECCCeEEEEeCC-------CCeEEEEeecCCCCCCCCCeeEEEE
Q 009763 304 HTLKD------HT-AEVQAVTV--HAT-NK-YFVTASLDNTWCFYDLS-------SGICLTQVSDAGTDGRPEGYTSAAF 365 (526)
Q Consensus 304 ~~~~~------h~-~~v~~l~~--~p~-~~-~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~v~~~~~ 365 (526)
..+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+..+... ..+..+..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg------sq~Egcvv 187 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN------SQTEGMAA 187 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS------SCEEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC------CCcceEEE
Confidence 33311 11 45667777 664 43 68888889999999983 33455666532 46888999
Q ss_pred ccCCcEEEEEeCCCcEEEEECC-----CCceeeEec-CC-CCCeEEEEEC--CCCC-EEEEEeCC-c-EEEEEcC-CCcc
Q 009763 366 HPDGLILGTGTSEALVKIWDVK-----SQANVAKFD-GH-VGAVTAISFS--ENGY-YLATAAHD-G-VKLWDLR-KLKN 432 (526)
Q Consensus 366 ~~~~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~-~~-~~~i~~l~~s--~~~~-~l~~~~~d-~-i~iwd~~-~~~~ 432 (526)
.+....|+++-++.-|..||.+ +++.+..+. ++ ...+..|++. +++. +|++++.+ . ..+||.. +.+.
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 9988899999998777777755 334554442 22 2368888884 4554 66666644 3 9999996 5666
Q ss_pred ceEEec
Q 009763 433 FRSFES 438 (526)
Q Consensus 433 ~~~~~~ 438 (526)
+..|..
T Consensus 268 vg~f~I 273 (355)
T 3amr_A 268 VADFRI 273 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666653
No 314
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.34 E-value=7.1e-08 Score=71.11 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=47.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHh-------cCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-------YGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+.+.+||+.| +||+|++.+|.+|+.. ..+||+++.+++.++|.+-
T Consensus 13 ~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 13 VTCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CEETTTTEECSSCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred CCCcCCCcccCCeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 46999999999999986 9999999999999987 5689999999999887765
No 315
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.34 E-value=0.00051 Score=68.29 Aligned_cols=235 Identities=11% Similarity=0.115 Sum_probs=133.5
Q ss_pred CeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC---C-cEEEEeCCCCC
Q 009763 225 GIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---K-TVRVWQGSEDG 298 (526)
Q Consensus 225 ~I~~~~~s~~--~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g-~i~iwd~~~~~ 298 (526)
.-..++|+|+ +..|..+...+.|+.+|..++...... ........++|+++|+++++.... . .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~- 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG- 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-
Confidence 3568899984 444444444489999999877665544 345568999999999954444321 1 1333332221
Q ss_pred ceeeeEecccCccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEE-Ee
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT-GT 376 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~ 376 (526)
+.....+. .......++++| ++.++++-..++.|..+|..++.....+..... ...-..++|+|+++.|++ -.
T Consensus 218 -~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 -FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp -TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEECTTSSEEEEEET
T ss_pred -eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEeCCCCEEEEEeC
Confidence 11111111 223456788999 666666666778999999987766333321111 123347999999985544 45
Q ss_pred CCCcEEEEECCC--Cce--eeEecC---------------CCCCeEEEEE---------CCCCCEEEEEeCCc-EEEEEc
Q 009763 377 SEALVKIWDVKS--QAN--VAKFDG---------------HVGAVTAISF---------SENGYYLATAAHDG-VKLWDL 427 (526)
Q Consensus 377 ~dg~i~iwd~~~--~~~--~~~~~~---------------~~~~i~~l~~---------s~~~~~l~~~~~d~-i~iwd~ 427 (526)
..+.|+.++... +.. ...+.+ .-.....+++ .++|.++++-.... |+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 567899988652 221 112211 1124677999 66776666555544 888885
Q ss_pred CCCccceEEecCCC----------------CCCeeEEEEcCCCCEEEEEeC-C--eEEEE
Q 009763 428 RKLKNFRSFESSDS----------------ETPTNSVDFDHSGSYLAVASA-D--IRVYQ 468 (526)
Q Consensus 428 ~~~~~~~~~~~~~~----------------~~~i~~i~~s~~~~~l~~~~~-d--i~v~~ 468 (526)
.+. +..+..... -.....++++|....|+++.. + |+.++
T Consensus 373 -~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 373 -EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp -TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred -CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 343 222222110 124678999944444444443 3 44444
No 316
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=66.21 Aligned_cols=54 Identities=17% Similarity=0.374 Sum_probs=48.1
Q ss_pred CcccccCCCCCC----ceEeCCCCeeeeHHHHHHHHHhc---CCCCCCCCCCCcCccccccC
Q 009763 1 MNCSISGEVPEE----PVVSKNSGLLFEKRLIERHILDY---GKCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 1 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~ 55 (526)
+.|+|+.+.+.+ |++.| |||+|++.+|.+|++.+ .+||++..++..+++..+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~ 76 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTD 76 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEE
T ss_pred CCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHH
Confidence 469999999999 99996 99999999999999987 68999999999888776643
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.30 E-value=0.00012 Score=70.09 Aligned_cols=171 Identities=10% Similarity=0.131 Sum_probs=101.7
Q ss_pred CCCcEEEEeCCCCC-ceeeeEeccc-----CccceEEEEEec--CCC-EEEEEEC---CCeEEEEeCCCCe-EEEEeecC
Q 009763 285 ADKTVRVWQGSEDG-NYDCKHTLKD-----HTAEVQAVTVHA--TNK-YFVTASL---DNTWCFYDLSSGI-CLTQVSDA 351 (526)
Q Consensus 285 ~dg~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~~p--~~~-~l~s~s~---dg~i~iwd~~~~~-~~~~~~~~ 351 (526)
.+|.|.++|..+.. ....+. +.+ .......+.+.+ ++. +|+++.. +.+|.+|++.... ....+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 68999999987421 112222 222 234677888766 354 4544432 4677787765432 21111111
Q ss_pred CCCCCCCCeeEEEEccCCcEEEEEe-----------------CCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEE
Q 009763 352 GTDGRPEGYTSAAFHPDGLILGTGT-----------------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 414 (526)
Q Consensus 352 ~~~~~~~~v~~~~~~~~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 414 (526)
....-...+.+.+.++|.++++.. ..|.|..+|. ++ +..+...-...+.++|+|+++.|
T Consensus 160 -~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 -RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp -CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEE
T ss_pred -ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEE
Confidence 112235688999999999877754 1245666655 32 22222233467899999999988
Q ss_pred EEEeCCc--EEEEEcCC-Ccc--ceEEecCCCCCCeeEEEEcC-CCCEEEEEeCC
Q 009763 415 ATAAHDG--VKLWDLRK-LKN--FRSFESSDSETPTNSVDFDH-SGSYLAVASAD 463 (526)
Q Consensus 415 ~~~~~d~--i~iwd~~~-~~~--~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d 463 (526)
+++.... |..||+.. +.. ...+.. ....-.+++++ +|.+.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCC
Confidence 8877553 99999864 222 223322 45678899999 59988876644
No 318
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.001 Score=66.45 Aligned_cols=246 Identities=10% Similarity=0.107 Sum_probs=135.0
Q ss_pred eeEEEEecC-CCEEEEE-eCCCcEEEEeCCCCCceeeeEec-ccCccceEEEEE-------ecCCCEEEEEECCC-----
Q 009763 268 VTSVKFVTE-GDLFLTG-SADKTVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTV-------HATNKYFVTASLDN----- 332 (526)
Q Consensus 268 V~~l~~~~~-~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~-------~p~~~~l~s~s~dg----- 332 (526)
...|+|.|. +..|+.+ ...+.|++.|...+. ...+... .........|+| +++++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 468899983 4444444 444678888887741 1111111 112235899999 99999777776654
Q ss_pred --eEEEEeCCC-CeEE-----EEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECC-------CCce-----
Q 009763 333 --TWCFYDLSS-GICL-----TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK-------SQAN----- 391 (526)
Q Consensus 333 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~-------~~~~----- 391 (526)
.|.+++... +... ..+.. . .....++++| ++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~--~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA--Y----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE--E----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CceEEEEecCCCCceeecccceeecc--C----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 266665443 1211 12211 0 1345788999 56667777778889999987 4443
Q ss_pred ------eeE-ec-CCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCC--Ccc--ceEEecC-CC------------CCC
Q 009763 392 ------VAK-FD-GHVGAVTAISFSENGYYLATAAHDG--VKLWDLRK--LKN--FRSFESS-DS------------ETP 444 (526)
Q Consensus 392 ------~~~-~~-~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~--~~~--~~~~~~~-~~------------~~~ 444 (526)
... +. +.......++|+|+|.+|+.+.... |+.+|... +.. ...+... .. -..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 111 21 2234568999999999766665543 88866532 211 1122111 00 012
Q ss_pred ee-EEEEc-------CCCCEEEEEeCCeEEEEEecccCcceeeeeecCC--------------C--------CCcceEEE
Q 009763 445 TN-SVDFD-------HSGSYLAVASADIRVYQVASVKADWNCIKTFPDL--------------S--------GTGKATCV 494 (526)
Q Consensus 445 i~-~i~~s-------~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~--------------~--------~~~~v~~~ 494 (526)
.. .+..+ ++|.++++-..+-+|+.++. ... +.++.+. . .-.....|
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~---~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP---EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT---TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEeC---CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 34 44554 44555444444444444432 111 1122110 0 12347899
Q ss_pred EEcCC-CCEEEEEeCCCcEEEeeCCCCCCCC
Q 009763 495 KFGPD-AKYIAVGSMDRNLRVFGLPGNDAPS 524 (526)
Q Consensus 495 ~~s~~-~~~l~s~~~dg~v~iw~l~~~~~~~ 524 (526)
+++++ |.+.++=.....|+.+++.......
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 99997 6655555567899999998766543
No 319
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=6.9e-05 Score=80.36 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=112.5
Q ss_pred ceEEEEEe-cCCCEEEEEEC-CC----eEEEEeCCCC-eEEEE-eecCCCCCCCCCeeEEEEccCCcEEEEEeCC-----
Q 009763 312 EVQAVTVH-ATNKYFVTASL-DN----TWCFYDLSSG-ICLTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----- 378 (526)
Q Consensus 312 ~v~~l~~~-p~~~~l~s~s~-dg----~i~iwd~~~~-~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----- 378 (526)
.+....|+ |+|++|+.+.. +| .|+++|+.++ +.+.. +. .....+.|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--------~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--------GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--------EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--------CceeeEEEecCCCEEEEEEECCCCCC
Confidence 57788999 99998875543 33 4999999988 63211 11 123468899999877766654
Q ss_pred CcEEEEECCCCce--eeEec-CCCCCeEEEEECCCCCEEEEEeCC---c-EEEEEcCCCc-cc--eEEecCCCCCCeeEE
Q 009763 379 ALVKIWDVKSQAN--VAKFD-GHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLK-NF--RSFESSDSETPTNSV 448 (526)
Q Consensus 379 g~i~iwd~~~~~~--~~~~~-~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~-~~--~~~~~~~~~~~i~~i 448 (526)
..|+++++.++.. ...+. ........+.|+|+|++|+..+.. . |.++|+.++. .. ..+.. .......++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s~ 325 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYDV 325 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEEE
Confidence 3588888877642 23332 223456788999999988876533 2 8999998753 12 22222 123445566
Q ss_pred EEcCCCCEEEEEeCC----eEEEEEeccc-Cccee-eeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 449 DFDHSGSYLAVASAD----IRVYQVASVK-ADWNC-IKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d----i~v~~~~~~~-~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
.|+..+.+++.+..+ .+||.++... ..|.. +. .+.....+..+.+. .+.++++...+|..++|
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li---~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV---DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE---CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE---CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 655444445554432 6777765432 23332 21 11112245566665 34455666777765444
No 320
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=6.1e-07 Score=63.06 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=44.1
Q ss_pred CcccccCC-CCCCc----eEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGE-VPEEP----VVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+ ...+| |++ .+||+|.+.+|++|+... .+||+++.+++.+++++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 36999999 77777 455 599999999999997654 679999999999998775
No 321
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.23 E-value=0.00041 Score=65.55 Aligned_cols=186 Identities=16% Similarity=0.291 Sum_probs=121.9
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC----Cc---EEEEEeC---CCcEEEEECC--C
Q 009763 321 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD----GL---ILGTGTS---EALVKIWDVK--S 388 (526)
Q Consensus 321 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~g~~---dg~i~iwd~~--~ 388 (526)
....++.....+-+.+||+ +|+.+..+.. ..++.+.+-|+ |. ++++... ++.|.+|++. +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 3456777778889999999 8888887742 24666666552 22 3334333 5789999773 3
Q ss_pred CceeeEecC------CC-CCeEEEEE--CCC-CC-EEEEEeCCc-EEEEEcC-------CCccceEEecCCCCCCeeEEE
Q 009763 389 QANVAKFDG------HV-GAVTAISF--SEN-GY-YLATAAHDG-VKLWDLR-------KLKNFRSFESSDSETPTNSVD 449 (526)
Q Consensus 389 ~~~~~~~~~------~~-~~i~~l~~--s~~-~~-~l~~~~~d~-i~iwd~~-------~~~~~~~~~~~~~~~~i~~i~ 449 (526)
+ .+..+.. .. ..+..+++ ++. +. ++++...++ +..|++. +.+.++.+.. ...+-.+.
T Consensus 111 ~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egcv 186 (355)
T 3amr_A 111 G-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMA 186 (355)
T ss_dssp C-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEE
T ss_pred C-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEE
Confidence 3 3444421 11 45667777 774 43 677777777 8888883 3355677766 45788999
Q ss_pred EcCCCCEEEEEeCCeEEEEEecccC---cceeeeeecCCCCCcceEEEEE--cCCCC-EEEEEe-CCCcEEEeeCC
Q 009763 450 FDHSGSYLAVASADIRVYQVASVKA---DWNCIKTFPDLSGTGKATCVKF--GPDAK-YIAVGS-MDRNLRVFGLP 518 (526)
Q Consensus 450 ~s~~~~~l~~~~~di~v~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~s~~-~dg~v~iw~l~ 518 (526)
.++....|+++-++.-||.++.... ....+..+....-...+..|++ .++++ +|++++ .++.+.+|+..
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999999999966998874322 2344444422111346788877 45555 666655 67799999986
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.22 E-value=0.0082 Score=62.44 Aligned_cols=284 Identities=8% Similarity=-0.014 Sum_probs=157.2
Q ss_pred CCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeC--CCcEEEEeCCCCCce
Q 009763 224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNY 300 (526)
Q Consensus 224 ~~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~ 300 (526)
.....+++.+.++ ++++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .+.|...++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 3577899998554 5556566789999998754433333344456789999997555555543 35666666654321
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
..+ ....-...+.|++++++..|+.+. ..+.|..+|+.......... . ... ....+++..+ .++.+-...+
T Consensus 163 ~~l--~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~-~~~---~P~gi~~~~~-~ly~td~~~~ 234 (619)
T 3s94_A 163 FII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-G-SLP---HPFALTLFED-ILYWTDWSTH 234 (619)
T ss_dssp EEE--ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTC
T ss_pred EEE--EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-C-CCC---CceEEEEeCC-EEEEecCCCC
Confidence 111 222335678999999777666664 46789999987654333221 1 112 2345666655 5555555677
Q ss_pred cEEEEECCCCceeeEecC-----------C--------------CCCeEEEEE-----------CCCC------------
Q 009763 380 LVKIWDVKSQANVAKFDG-----------H--------------VGAVTAISF-----------SENG------------ 411 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~-----------~--------------~~~i~~l~~-----------s~~~------------ 411 (526)
.|...|..+++....+.. | .+....+++ .|.|
T Consensus 235 ~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~ 314 (619)
T 3s94_A 235 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 314 (619)
T ss_dssp SEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCS
T ss_pred EEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCC
Confidence 899998877653322210 0 000111111 1221
Q ss_pred ---CEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCC
Q 009763 412 ---YYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSG 487 (526)
Q Consensus 412 ---~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~ 487 (526)
.+|+.+....|+..++..............-..+..++|++.+..|+.+... .+|+.+.........+.. . .
T Consensus 315 ~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~--~ 390 (619)
T 3s94_A 315 GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--A--Q 390 (619)
T ss_dssp SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--S--S
T ss_pred CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--C--C
Confidence 1344444444666677654322211111113457789999977777777654 556555433222222221 1 1
Q ss_pred CcceEEEEEcCCCCEEEEE-eCCCcEEEeeCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVG-SMDRNLRVFGLPGN 520 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~l~~~ 520 (526)
...+..+++...++.|+.+ +..+.|.+.++++.
T Consensus 391 ~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 3456788998755555544 45678888888754
No 323
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.21 E-value=0.0015 Score=61.87 Aligned_cols=205 Identities=8% Similarity=-0.018 Sum_probs=126.8
Q ss_pred CeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcE-EEEecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCcee
Q 009763 225 GIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 225 ~I~~~~~s~~~-~~l~t~~~dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
.+..++|++.+ .++.+-...+.|..++...+.. ...+...-.....+++.+. +.++++-...+.|.+++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence 46688999854 4555556678899998876532 1222222345678899874 4555555567889999987532
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCC
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE 378 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~d 378 (526)
....+.........+++.|.+..++.+.. .+.|...++.......... ..-.....+++++++..|+.+ ...
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-----SEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-----CCCCCccEEEEeccCCEEEEEECCC
Confidence 11112233456789999997777766663 5788888886433222221 112356899999966555554 456
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEec
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 438 (526)
+.|..+|+........+.........+++.. +.++++-...+ |..+|..+++....+..
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 7899999864332222333445667888853 34444433344 99999877776666544
No 324
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.18 E-value=0.0011 Score=61.97 Aligned_cols=201 Identities=9% Similarity=0.123 Sum_probs=124.5
Q ss_pred EEEEecCCCCEEEEEe-CCCcEEEEeCCCCcEEEE-ecc----cc--cceeEEEE---ecCCCEEEEEe-----------
Q 009763 227 VSLDIHYSKDVIATGG-VDTNAVLFDRPSGQIVTT-LSG----HS--KKVTSVKF---VTEGDLFLTGS----------- 284 (526)
Q Consensus 227 ~~~~~s~~~~~l~t~~-~dg~v~vwd~~~~~~~~~-~~~----h~--~~V~~l~~---~~~~~~l~s~s----------- 284 (526)
-+++|++....+..++ ..|+|..|+...+..... +.+ .. ..+..|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4778988666666665 799999999976644333 222 11 13578999 58877777543
Q ss_pred --CCCcEEEEeCC---CCCceeeeEecccC-----------ccceEEEEEecCCCEEEEEECC-CeEEEEeCCCCeEEEE
Q 009763 285 --ADKTVRVWQGS---EDGNYDCKHTLKDH-----------TAEVQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLTQ 347 (526)
Q Consensus 285 --~dg~i~iwd~~---~~~~~~~~~~~~~h-----------~~~v~~l~~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~~ 347 (526)
.++.|..||+. ++... ....+... ......++..++|+..++++.. +.|..++.........
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~-~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPV-WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCS-EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEE-EEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence 26779999988 54321 12222211 1348899999999999999988 8888888765432222
Q ss_pred eecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCce--eeEec--CC---CCCeEEE-EECCCCCEEEEE-e
Q 009763 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFD--GH---VGAVTAI-SFSENGYYLATA-A 418 (526)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~--~~---~~~i~~l-~~s~~~~~l~~~-~ 418 (526)
.............+.++++|+|.+|++....|.+..+|++.... +. .. +. -.....+ ..-.+|+.|+++ .
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~ 253 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGAR 253 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcC
Confidence 21111112234578999999999888887799999999885432 11 11 21 1223443 323367774444 4
Q ss_pred CCc-EEEEEcCC
Q 009763 419 HDG-VKLWDLRK 429 (526)
Q Consensus 419 ~d~-i~iwd~~~ 429 (526)
..+ +.+.+...
T Consensus 254 ~~~~~~l~S~Dg 265 (334)
T 2p9w_A 254 APYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEECSST
T ss_pred CCCEEEEECCCC
Confidence 445 55555443
No 325
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.18 E-value=0.0022 Score=60.72 Aligned_cols=223 Identities=7% Similarity=-0.035 Sum_probs=130.9
Q ss_pred CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEE
Q 009763 286 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (526)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (526)
...|+.+++..... .....+. ....+..++|++.+..|+.+ ...+.|..+++..+.....+... .......++
T Consensus 12 ~~~I~~i~l~~~~~-~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~l~~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGKE-NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----GLLSPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTTS-CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----CCSCCCEEE
T ss_pred cCeEEEEECCCCce-EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----CCCCccEEE
Confidence 46789999876421 1111111 22456789999866555555 45678999998766321111111 012466889
Q ss_pred Ecc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC--Cc-EEEEEcCCCccceEEecCC
Q 009763 365 FHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH--DG-VKLWDLRKLKNFRSFESSD 440 (526)
Q Consensus 365 ~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--d~-i~iwd~~~~~~~~~~~~~~ 440 (526)
+.+ .++++++-...+.|.++++........+.........+++.|.+.+|+.+.. .. |..+++.... ...+...
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~- 163 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINS- 163 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECS-
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEEC-
Confidence 987 5566666666789999998654333333344456789999986555555542 23 8888876432 2333221
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCC
Q 009763 441 SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 519 (526)
Q Consensus 441 ~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~ 519 (526)
.-.....++|++++..|+.+... -+|+.++........+.. . .......+++.. +.++++-...+.|..++..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--G--SLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--S--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--C--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 13467899999988888887765 444444332222222221 1 134567777753 34455555667888888754
Q ss_pred CC
Q 009763 520 ND 521 (526)
Q Consensus 520 ~~ 521 (526)
+.
T Consensus 239 G~ 240 (318)
T 3sov_A 239 GE 240 (318)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 326
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.18 E-value=1.3e-06 Score=74.86 Aligned_cols=52 Identities=35% Similarity=0.483 Sum_probs=47.4
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+++.+||.++ +||+|++.+|.+|++..+ +||+++.+++.+++++.
T Consensus 19 ~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 19 YECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (170)
T ss_dssp GBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCChhhcCcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhh
Confidence 46999999999999985 999999999999999876 99999999998887765
No 327
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.16 E-value=0.005 Score=65.72 Aligned_cols=225 Identities=7% Similarity=-0.040 Sum_probs=134.2
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCc-eeeeEecccCccceE
Q 009763 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQ 314 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~ 314 (526)
+|+.+. ...|+..++........+. ....+..|+|.+.+. ++++-...+.|+.+++..... ......+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444433 4568888887655544444 345678999998544 455555667888888865211 011222222334567
Q ss_pred EEEEecCCCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CC-CcEEEEECCCCce
Q 009763 315 AVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-ALVKIWDVKSQAN 391 (526)
Q Consensus 315 ~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~d-g~i~iwd~~~~~~ 391 (526)
.|++.+.+..|+.+ ...+.|.+.++........+. ........|+++|.+..|+... .. +.|...++.....
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence 89998877555544 457899999998655433332 1123578999999755555544 33 6788888865444
Q ss_pred eeEecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEE
Q 009763 392 VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQ 468 (526)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~ 468 (526)
...+.......+.|++++.+..|+.+... . |..+|+........+...........|++. +.+|+.+... -+|+.
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~ 627 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFS 627 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEE
Confidence 33334344578999999877777766554 3 999998654443333322112334566653 4466666655 56665
Q ss_pred Ee
Q 009763 469 VA 470 (526)
Q Consensus 469 ~~ 470 (526)
++
T Consensus 628 ~d 629 (791)
T 3m0c_C 628 AN 629 (791)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 328
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.1e-06 Score=59.90 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=35.4
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhc---CCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY---GKCPVT 41 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~ 41 (526)
+.|+|+.+.+.+||+.| +||+|.+.+|.+|++.. .+||++
T Consensus 21 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 21 VICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CBCTTTCSBCSSCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcCCchhCCeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46999999999999995 99999999999999953 479975
No 329
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.14 E-value=0.012 Score=61.26 Aligned_cols=199 Identities=8% Similarity=-0.005 Sum_probs=116.6
Q ss_pred CCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCCcE-EEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCce
Q 009763 224 PGIVSLDIHYSKDVIATG-GVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~-~~dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
.....++|++.++.|+.+ ...+.|..+++..... ...+.........+++.+.+. ++++-...+.|.+.++....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-- 117 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-- 117 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--
Confidence 357899999876655544 4467888888875432 233333335688999998555 45555567899999987642
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eC
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TS 377 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~ 377 (526)
....+...-.....|++.|.+.+|+.+.. .+.|...++........... .-.....+++++++..|+.+ ..
T Consensus 118 -~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~-----~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 118 -RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-----EIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp -CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-----SCSSEEEEEEETTTTEEEEEETT
T ss_pred -EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-----CCCCCcEEEEEccCCEEEEEeCC
Confidence 11112233445778999998777666654 36777777764433222221 12457899999965555444 45
Q ss_pred CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCcc
Q 009763 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN 432 (526)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~ 432 (526)
.+.|..+|+..........+.......+++..+ .|+.+... + |...|..+++.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 678999988654332222222233456777655 44444433 3 88888776653
No 330
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.8e-06 Score=61.46 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=39.9
Q ss_pred cccccCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|+|+.+.+.+| ++. .+||+|.+.+|.+|+..+.+||++..+++
T Consensus 17 ~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 17 SCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 599999998887 666 59999999999999999999999999876
No 331
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.10 E-value=0.0054 Score=65.47 Aligned_cols=220 Identities=11% Similarity=-0.013 Sum_probs=127.1
Q ss_pred CCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEE-ECCCeEEEEeCCCCe----EEEEeecCCCCCCCCC
Q 009763 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGI----CLTQVSDAGTDGRPEG 359 (526)
Q Consensus 285 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~ 359 (526)
....|+..++.... .... ......+..|+|++.+..|+.+ ...+.|+.+++.... ....+. .....
T Consensus 402 n~~~Ir~i~l~~~~---~~~l-~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-----~~l~~ 472 (791)
T 3m0c_C 402 NRHEVRKMTLDRSE---YTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RDIQA 472 (791)
T ss_dssp CBSSEEEECTTSCC---CEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-----SSCSC
T ss_pred cccceeEeeccCCc---ceee-ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-----cCCCC
Confidence 34568888876642 1222 2234567899999866555544 456789999987532 122221 11235
Q ss_pred eeEEEEccCC-cEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe-CC-c-EEEEEcCCCccceE
Q 009763 360 YTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HD-G-VKLWDLRKLKNFRS 435 (526)
Q Consensus 360 v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d-~-i~iwd~~~~~~~~~ 435 (526)
...+++.+.+ +++++-...+.|.+.++........+.........|++.|.+.+|+.+. .. . |...++..... ..
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EE
Confidence 6789999866 5555656678999999875544333443445689999999755555554 33 3 88888865433 33
Q ss_pred EecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe-CCCcEE
Q 009763 436 FESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLR 513 (526)
Q Consensus 436 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~ 513 (526)
+... .......|++++.+..|+.+... -+|+.++........+..-.. ......+|++.. ..|+.+. ..+.|.
T Consensus 552 lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~--~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 552 LVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp EECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT--TTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred EEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC--ccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 3222 13578899999988888888765 455554433332222222111 123445676643 3444444 456676
Q ss_pred EeeCCC
Q 009763 514 VFGLPG 519 (526)
Q Consensus 514 iw~l~~ 519 (526)
..+..+
T Consensus 627 ~~dk~t 632 (791)
T 3m0c_C 627 SANRLT 632 (791)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 666433
No 332
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=6.8e-07 Score=71.22 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=45.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+++.+||+.+.|||+|++.+|.+|+. .+||+++.++...+|.+-
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 469999999999999845999999999999998 889999999887666554
No 333
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.09 E-value=0.0012 Score=63.77 Aligned_cols=224 Identities=9% Similarity=0.037 Sum_probs=121.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE--EEEec---ccccceeEEEEecC---CCEEEEEeC-C-----CcEE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLS---GHSKKVTSVKFVTE---GDLFLTGSA-D-----KTVR 290 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~--~~~~~---~h~~~V~~l~~~~~---~~~l~s~s~-d-----g~i~ 290 (526)
.-..++|.|+|+++++ ..+|.|.+++ +++. +..+. ........|+|+|+ +..|+.+.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4579999999996655 5569999998 3432 22221 12356789999998 444444433 2 5677
Q ss_pred EEeCCCCC--ceeee-Eecc---cCccceEEEEEecCCCEEEEEEC-------------CCeEEEEeCCCC---------
Q 009763 291 VWQGSEDG--NYDCK-HTLK---DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSG--------- 342 (526)
Q Consensus 291 iwd~~~~~--~~~~~-~~~~---~h~~~v~~l~~~p~~~~l~s~s~-------------dg~i~iwd~~~~--------- 342 (526)
.|+..... ..+.+ ..+. +.......|+|.|+|.++++.+. .|.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 78776421 11111 1122 11122368999999977666432 145666665431
Q ss_pred -----eEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcE------EEEECCCCc------------------ee
Q 009763 343 -----ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALV------KIWDVKSQA------------------NV 392 (526)
Q Consensus 343 -----~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i------~iwd~~~~~------------------~~ 392 (526)
..+... ++ .....++|+| ++.++++-...+.+ .+.-+..+. ++
T Consensus 189 ~~~~~~~i~a~------G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 189 RRGARPEVYSL------GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTSCTTEEEE------CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCccEEEE------cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 001000 11 2356788999 66666554333331 122222221 22
Q ss_pred eEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCcc------ceEEecCCCCCCeeEEEEcCCCCEEEEEeC
Q 009763 393 AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN------FRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
..+. +......++| .+|.++++....+ |...++..... ...+.. ....+..+++.|+|.++++...
T Consensus 262 ~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 262 YFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEECS
T ss_pred EecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEeC
Confidence 2232 2234667888 3666655554444 77777764331 122211 1357899999999987776543
No 334
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.0041 Score=62.15 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=96.6
Q ss_pred CeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCcEEEEeccc---ccceeEEEE-------ecCCCEEEEEeCCC-----
Q 009763 225 GIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGH---SKKVTSVKF-------VTEGDLFLTGSADK----- 287 (526)
Q Consensus 225 ~I~~~~~s~~--~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h---~~~V~~l~~-------~~~~~~l~s~s~dg----- 287 (526)
.-..|+|+|. ++++++....+.|++.|..++.+...+... ......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 445555554577999999877666554432 235789999 99999666666543
Q ss_pred --cEEEEeCCCCCceee---eEecccCccceEEEEEecCC-CEEEEEECCCeEEEEeCC-------CCeE----------
Q 009763 288 --TVRVWQGSEDGNYDC---KHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLS-------SGIC---------- 344 (526)
Q Consensus 288 --~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~-------~~~~---------- 344 (526)
.|.+++....+.+.. ...+... .....++++|++ .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665443222210 0111111 234577889954 555556677889999987 5543
Q ss_pred -EEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCCCcEEEEEC
Q 009763 345 -LTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDV 386 (526)
Q Consensus 345 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~ 386 (526)
...+... ........++|+|+|+.|+.+ ...+.|+.+|.
T Consensus 299 ~~~~l~~~---~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 299 TFKQLFTI---ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TEEEEEEC---SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccceeEec---CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1122111 112345789999999965554 45678888665
No 335
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.05 E-value=3.7e-06 Score=61.51 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=44.3
Q ss_pred cccccCCCCCCc---eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 2 NCSISGEVPEEP---VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
.|+|+.+.+.+| ++.| |||+|.+.+|.+|++.+.+||++..+++..++.+.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 17 ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 599998887655 4444 99999999999999999999999999998888765
No 336
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.05 E-value=0.0058 Score=58.15 Aligned_cols=230 Identities=7% Similarity=0.055 Sum_probs=128.9
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec---ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCce
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (526)
..+.+|.|++ +..+++ +..|.|.. ..+.|+.-..+. .+.+.+..+.+.+++..++++ .+|.|.. ..+.+..+
T Consensus 80 ~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW 154 (327)
T ss_dssp CEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred ccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence 3688899986 444444 45665443 333344433332 233457788887777766655 4565432 12233344
Q ss_pred eeeEecccCccceEEEEEecCCCEEEEEECCCeEEE-EeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF-YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
..+. ..+...+..+.+.+++.+++.+. +|.+.. +|- .+..-..+.. .....+..+.+.+++.+++++ .+|
T Consensus 155 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~-~~G 225 (327)
T 2xbg_A 155 QALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIV-NGG 225 (327)
T ss_dssp EEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEEC----CSSSCEEEEEECTTSCEEEEE-TTT
T ss_pred EEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCC----CCCCccceeEECCCCCEEEEe-CCc
Confidence 4433 24556789999999888776654 444443 442 1222222221 223568889999988766554 578
Q ss_pred cEEEEECCCCceeeEecC----CCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecC-CCCCCeeEEEEcCCC
Q 009763 380 LVKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSG 454 (526)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~-~~~~~i~~i~~s~~~ 454 (526)
.+++.+...++.-..+.. ....+..+.+.+++.+++++....| ++....++.-..+... .....+..+.|.+++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~ 304 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD 304 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence 777764322332222221 2235889999988887777664445 4455555544433321 112457888887655
Q ss_pred CEEEEEeCCeEEEEE
Q 009763 455 SYLAVASADIRVYQV 469 (526)
Q Consensus 455 ~~l~~~~~di~v~~~ 469 (526)
. +++++.+..|+.+
T Consensus 305 ~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 305 Q-GFILGQKGILLRY 318 (327)
T ss_dssp E-EEEECSTTEEEEE
T ss_pred c-eEEEcCCceEEEE
Confidence 5 4455556666665
No 337
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.03 E-value=5.3e-06 Score=58.78 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=40.8
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|+|+.+.+.+|++...+||+|.+.+|.+|++.+.+||++..+++
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 599999999998555569999999999999999999999998886
No 338
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.03 E-value=0.0058 Score=58.79 Aligned_cols=231 Identities=13% Similarity=0.200 Sum_probs=119.3
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc---cCccceEEEEEecC---CCEEEEEEC-C-----Ce
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK---DHTAEVQAVTVHAT---NKYFVTASL-D-----NT 333 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~---~~~l~s~s~-d-----g~ 333 (526)
.....++|.|+|+++++ ..+|.|.+++ .+ ....+..+. ........|+++|+ +..|+.+.. . +.
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34679999999985554 5679999998 22 223332221 22356889999998 555544433 2 67
Q ss_pred EEEEeCCCCeE---EEEeecCCC-CCCCCCeeEEEEccCCcEEEEEeC-------------CCcEEEEECCCC-------
Q 009763 334 WCFYDLSSGIC---LTQVSDAGT-DGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ------- 389 (526)
Q Consensus 334 i~iwd~~~~~~---~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~------- 389 (526)
|..|+...+.. ...+..... .........++|.|||.++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 88888775421 111111100 111123468999999977666432 145666665420
Q ss_pred -----ceeeEe-cCCCCCeEEEEECC-CCCEEEEEeCCc-E------EEEEcCCCcc------------------ceEEe
Q 009763 390 -----ANVAKF-DGHVGAVTAISFSE-NGYYLATAAHDG-V------KLWDLRKLKN------------------FRSFE 437 (526)
Q Consensus 390 -----~~~~~~-~~~~~~i~~l~~s~-~~~~l~~~~~d~-i------~iwd~~~~~~------------------~~~~~ 437 (526)
.....+ .++ .....++|+| +|.++++-.... + .|.-+..+.. ...+
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 011111 122 2467789999 566555533222 2 2333333221 1111
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCCeEEE--EEecccCcc--eeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASADIRVY--QVASVKADW--NCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~di~v~--~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
........++| .+|.++++.-..-+|+ +++.....+ .....+.. ....+..+++.|||.+.++..
T Consensus 265 --~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 --PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp --TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred --CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 11234567777 4566555443334444 443222111 11122211 145789999999998766654
No 339
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.02 E-value=0.0042 Score=58.37 Aligned_cols=236 Identities=11% Similarity=0.085 Sum_probs=123.3
Q ss_pred CCEEEEEeC--CCcEEEEeCCCCcEEEE--ecccccceeEEEEecCCCEEEEEeCC----CcEEEEeCCCCCceeeeEec
Q 009763 235 KDVIATGGV--DTNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSEDGNYDCKHTL 306 (526)
Q Consensus 235 ~~~l~t~~~--dg~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~ 306 (526)
+.+++.|+. ...+.+||..+++-... +......-..+. -++.+++.|+.+ ..+.+||..+. .+..+..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCC
Confidence 345666664 35788999887643221 111111112222 367777777754 56888998774 34444333
Q ss_pred ccCccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC---
Q 009763 307 KDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS--- 377 (526)
Q Consensus 307 ~~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--- 377 (526)
.........+.+ ++.+++.|+.+ ..+.+||+.+......-... ...... +++. .++.+++.|+.
T Consensus 89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~-~~~~-~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML---TQRCSH-GMVE-ANGLIYVCGGSLGN 161 (306)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS---SCCBSC-EEEE-ETTEEEEECCEESC
T ss_pred CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc---CCccee-EEEE-ECCEEEEECCCCCC
Confidence 322222222222 56777777765 46899999988765432211 111111 2222 36777777764
Q ss_pred ------CCcEEEEECCCCceeeE--ecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCccceEEecCCCCC
Q 009763 378 ------EALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 378 ------dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
-..+.+||+.+.+-... +......-..+.+ ++++++.|+.+ .+.+||+.+.+-...-.......
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 34588999987643222 2111112222333 56666666532 38899988754322111111111
Q ss_pred CeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecC
Q 009763 444 PTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~ 484 (526)
....+.+ ++.+++.|+.+ -.+|.++.....|..+..+..
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 283 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRA 283 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEEC
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccc
Confidence 2222333 67777777743 445555555677887766654
No 340
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.01 E-value=3.9e-06 Score=56.60 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=41.0
Q ss_pred cccccCCCCCC---ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCc
Q 009763 2 NCSISGEVPEE---PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM 47 (526)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (526)
.|+|+.+...+ +++.|.+||+|.+.+|.+|++.+.+||++..++.+
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 59999988776 78887899999999999999999999999988753
No 341
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.01 E-value=0.0026 Score=59.63 Aligned_cols=236 Identities=14% Similarity=0.186 Sum_probs=122.9
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCcEEEE--ecccccceeEEEEecCCCEEEEEeCC-----CcEEEEeCCCCCc-
Q 009763 234 SKDVIATGG-VD-----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDGN- 299 (526)
Q Consensus 234 ~~~~l~t~~-~d-----g~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~- 299 (526)
++.+++.|+ .+ ..+.+||..+++-... +.........+ .-++.+++.|+.+ ..+.+||..+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455666676 33 4688899876643221 11111111122 2367777777754 4688999877431
Q ss_pred -eeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEE
Q 009763 300 -YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (526)
Q Consensus 300 -~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 373 (526)
+..+..+.........+.+ ++..++.|+.+ ..+.+||+.+......-... . . .....++. .++.+++
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~-~-r~~~~~~~--~~~~iyv 164 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ-T-A-REGAGLVV--ASGVIYC 164 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS-S-C-CBSCEEEE--ETTEEEE
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC-C-C-cccceEEE--ECCEEEE
Confidence 4444333322222222222 56677777643 36889999888765443211 1 1 11122222 2678888
Q ss_pred EEeCC-----CcEEEEECCCCceeeE--ecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCccceEEecCC
Q 009763 374 TGTSE-----ALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSD 440 (526)
Q Consensus 374 ~g~~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~ 440 (526)
.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ .+.+||+.+.+-...-....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 88765 4688999887643322 2111112223333 56777777643 28999998765332211111
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeee
Q 009763 441 SETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTF 482 (526)
Q Consensus 441 ~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~ 482 (526)
.......+.+ ++++++.|+.+ -.+|.++.....|..+..+
T Consensus 243 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 243 PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSM 287 (301)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCC
Confidence 1111222222 56777777643 3455555555667766544
No 342
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.0026 Score=59.56 Aligned_cols=207 Identities=6% Similarity=-0.014 Sum_probs=122.9
Q ss_pred CccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCC---CCCCCCeeEEEE---ccCCcEEEEEe-----
Q 009763 309 HTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGT---DGRPEGYTSAAF---HPDGLILGTGT----- 376 (526)
Q Consensus 309 h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~---~~~~~~l~~g~----- 376 (526)
......++.|++....|..++ ..++|..||...+..... ..... ......+..+.| .|++.++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 334455789998666666666 789999999986654433 21111 011124578999 68888888654
Q ss_pred --------CCCcEEEEECC---CCceeeEecC-------------CCCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCC
Q 009763 377 --------SEALVKIWDVK---SQANVAKFDG-------------HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL 430 (526)
Q Consensus 377 --------~dg~i~iwd~~---~~~~~~~~~~-------------~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~ 430 (526)
.+..|..||+. +++.+....- .......++..++|+..++++.. + |..++....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 7776654431 11347899999999999988877 6 766665533
Q ss_pred ccceEEecC----CCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeee-cCC-CCCcceEEE-EEcCCCCE-
Q 009763 431 KNFRSFESS----DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTF-PDL-SGTGKATCV-KFGPDAKY- 502 (526)
Q Consensus 431 ~~~~~~~~~----~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~-~~s~~~~~- 502 (526)
....+... ......+.|+++|+|..|++.....+++.++........+..- .+. ........+ ..-.+|+.
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 22222211 1123467999999999999887685555554332111011110 010 011123333 33347777
Q ss_pred EEEEeCCCcEEEeeC
Q 009763 503 IAVGSMDRNLRVFGL 517 (526)
Q Consensus 503 l~s~~~dg~v~iw~l 517 (526)
|++.+..+.+.+.+-
T Consensus 249 lV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 249 LVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEETTEEEEEECS
T ss_pred EEEcCCCCEEEEECC
Confidence 455555665555544
No 343
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.98 E-value=0.014 Score=56.20 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=121.8
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc---cCccceEEEEEecC---CCEEEEEEC----C----
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK---DHTAEVQAVTVHAT---NKYFVTASL----D---- 331 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~---~~~l~s~s~----d---- 331 (526)
.....++|.|+|++++ +..+|.|++++. .+ . ..+..+. ........|+++|+ +..|+.+.. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-SG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEECS-SC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4568999999998554 566699999973 32 2 2333221 12346889999997 555544433 3
Q ss_pred CeEEEEeCCCC--e-----EE-EEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-------------CCcEEEEECCCC-
Q 009763 332 NTWCFYDLSSG--I-----CL-TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ- 389 (526)
Q Consensus 332 g~i~iwd~~~~--~-----~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~- 389 (526)
..|..|+.... . .+ ..+. . ...| ....+.|.|||.++++.+. .|.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~-~-~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIP-G-AYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEE-C-CSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCC-C-CCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 57888887654 1 11 1121 1 1122 3467999999987776432 245655555321
Q ss_pred --------ceeeEecCCCCCeEEEEECC-CCCEEEEEeCCc----EEEEEcCCCccc----------------eEEecCC
Q 009763 390 --------ANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG----VKLWDLRKLKNF----------------RSFESSD 440 (526)
Q Consensus 390 --------~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~----i~iwd~~~~~~~----------------~~~~~~~ 440 (526)
..+.. .++ .....++|+| +|.++++-.... |.+. ..+... ..+....
T Consensus 181 p~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp CTTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 01111 223 2457899999 666555543221 4333 222210 0011101
Q ss_pred CCCCeeEEEEc-------CCCCEEEEEeCCeEEEEEecccC-cceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 441 SETPTNSVDFD-------HSGSYLAVASADIRVYQVASVKA-DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 441 ~~~~i~~i~~s-------~~~~~l~~~~~di~v~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
....+..+.|. .+|.++++.-...+|+.+..... .......+... ....+..+++.|||.+.++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence 13457788883 56766665544445554433221 11111222211 145789999999997666654
No 344
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.97 E-value=1.6e-06 Score=71.16 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=43.1
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCcCcc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDI 50 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~ 50 (526)
+.|+|+.+++.+||.+ .|||+|++.+|.+|++..+ +||++..++..++.
T Consensus 32 ~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 81 (141)
T 3knv_A 32 YLCSACRNVLRRPFQA-QCGHRYCSFCLASILSSGPQNCAACVHEGIYEEG 81 (141)
T ss_dssp GBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTT
T ss_pred cCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhcCCCCCCCCCCccccccc
Confidence 4699999999999998 4999999999999998776 89999988766543
No 345
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.97 E-value=3.6e-06 Score=68.89 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=48.9
Q ss_pred CcccccCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccccC
Q 009763 1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT 55 (526)
Q Consensus 1 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 55 (526)
+.|+|+.+.+.+| |+. .+||+|.+.+|.+|++.+.+||+++++++..++.++..
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred CCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence 4699999999988 777 59999999999999999999999999999999988754
No 346
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.92 E-value=1.1e-05 Score=54.32 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=38.1
Q ss_pred cccccCCCCCC----ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEE----PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|+|+.+...+ +++. .+||+|.+.+|.+|++.+.+||++..+++
T Consensus 7 ~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred cCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 59999998755 5565 59999999999999999999999998764
No 347
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=6.7e-06 Score=60.41 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=42.3
Q ss_pred cccccCCCCCC--------------ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCcc
Q 009763 2 NCSISGEVPEE--------------PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDI 50 (526)
Q Consensus 2 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 50 (526)
.|+|+.+...+ +++.|.+||+|-+.+|.+|++.+.+||++..++...++
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence 48888887765 67777899999999999999999999999999886653
No 348
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.91 E-value=0.034 Score=59.48 Aligned_cols=278 Identities=10% Similarity=0.053 Sum_probs=152.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeee
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (526)
..|.++....+| .|..|+.+| +..||..+.+...........|.++.. .+|. |..++.+ -+..||..+.. ....
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~-~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRK-LTSF 136 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCC-EEEE
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCe-EEEe
Confidence 468888777655 555666565 788998765432211112234776654 3554 5556665 57788876532 1111
Q ss_pred Eec-c-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcE
Q 009763 304 HTL-K-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (526)
Q Consensus 304 ~~~-~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 381 (526)
... . .....|.++....+|.+.+ ++.+ -+..+|..++.................|.++....++..|.+|+. +-+
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 000 0 1234688888877777655 4444 577888877654322111100011234788888777765556664 458
Q ss_pred EEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecC------CCCCCeeEEEEcCCCC
Q 009763 382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS------DSETPTNSVDFDHSGS 455 (526)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~------~~~~~i~~i~~s~~~~ 455 (526)
..+|..+++...........|.++....+|.+.+. +.+|+.++|..+.... .+... -....|.++..+.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence 88998766432211112345888888877766554 4667999998765432 22211 1134588998888887
Q ss_pred EEEEEeCCeEEEEEecccCcceeeee--ecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeC
Q 009763 456 YLAVASADIRVYQVASVKADWNCIKT--FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517 (526)
Q Consensus 456 ~l~~~~~di~v~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l 517 (526)
+-+.....+.++.. ......... .........|.++.-..+|.+. .|+.+| +..++.
T Consensus 292 lWiGT~~Gl~~~~~---~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~ 350 (758)
T 3ott_A 292 IWLGTDYGISLSRY---NSALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTD 350 (758)
T ss_dssp EEEEESSSEEEECC---CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESC
T ss_pred EEEEeCCccccccc---CCceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeecc
Confidence 66544333443321 111221110 1111123468888888787754 455555 445543
No 349
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=4.9e-06 Score=56.82 Aligned_cols=40 Identities=35% Similarity=0.454 Sum_probs=34.8
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHH---hcCCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHIL---DYGKCPVT 41 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~ 41 (526)
+.|+|+.+.+.+||+.| +||+|.+.+|.+|+. .+.+||++
T Consensus 16 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSCCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCccEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 36999999999999986 999999999999954 45679874
No 350
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.88 E-value=0.0045 Score=58.19 Aligned_cols=227 Identities=10% Similarity=0.135 Sum_probs=118.4
Q ss_pred CEEEEEeC--CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecC
Q 009763 278 DLFLTGSA--DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDA 351 (526)
Q Consensus 278 ~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~ 351 (526)
.+++.|+. ...+.+||..+. .+..+..+......-..+.+ ++..++.|+.+ ..+.+||+.++.....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35556664 357888998773 33333322221122222222 56677777754 67899999988765443211
Q ss_pred CCCCCCCCeeEEEEccCCcEEEEEeCC------CcEEEEECCCCceeeE--ecCCCCCeEEEEECCCCCEEEEEeC----
Q 009763 352 GTDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAH---- 419 (526)
Q Consensus 352 ~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~---- 419 (526)
........+. -++.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++++++.|+.
T Consensus 90 ---~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 90 ---TPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNN 162 (306)
T ss_dssp ---SCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCT
T ss_pred ---ccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCC
Confidence 1111122222 267788888765 4689999987653222 2111112222333 5666666642
Q ss_pred ------CcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCCCCC
Q 009763 420 ------DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGT 488 (526)
Q Consensus 420 ------d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~ 488 (526)
+.+.+||+.+.+-... ........-..+... ++++++.|+.+ -.+|.++.....|..+..+... .
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 238 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTEL-CPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--G 238 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--B
T ss_pred CcccccceEEEeCCCCCeEEEC-CCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--c
Confidence 2388999887643222 111111111222222 56677776542 2344444445668777654432 2
Q ss_pred cceEEEEEcCCCCEEEEEeCC-----CcEEEeeCCCC
Q 009763 489 GKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 520 (526)
Q Consensus 489 ~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~l~~~ 520 (526)
....++.+ ++++++.|+.+ ..+.+||+..+
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22333333 67788888754 46788887654
No 351
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.86 E-value=0.012 Score=56.53 Aligned_cols=227 Identities=13% Similarity=0.068 Sum_probs=123.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-EEEEec---ccccceeEEEEecC---CCEEEEEeC----C----CcE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLS---GHSKKVTSVKFVTE---GDLFLTGSA----D----KTV 289 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~-~~~~~~---~h~~~V~~l~~~~~---~~~l~s~s~----d----g~i 289 (526)
.-..++|.|+|+++++ ..+|.|++++. +++ .+..+. ........|+|+|+ +..|+++.. + +.|
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4679999999985555 55699999973 454 222221 12356889999997 444444432 3 567
Q ss_pred EEEeCCCCC-c---eeee-Eecc-cCccceEEEEEecCCCEEEEEEC-------------CCeEEEEeCCCC--------
Q 009763 290 RVWQGSEDG-N---YDCK-HTLK-DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSG-------- 342 (526)
Q Consensus 290 ~iwd~~~~~-~---~~~~-~~~~-~h~~~v~~l~~~p~~~~l~s~s~-------------dg~i~iwd~~~~-------- 342 (526)
..|+..... . .+.+ ..+. ........|.|.|+|.++++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 777765431 1 1111 1122 11112467999999987776443 245555555421
Q ss_pred -eEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCC---cEEEEECCC--------C--------ceeeEecCCCCC
Q 009763 343 -ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEA---LVKIWDVKS--------Q--------ANVAKFDGHVGA 401 (526)
Q Consensus 343 -~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg---~i~iwd~~~--------~--------~~~~~~~~~~~~ 401 (526)
..+... ++ .....++|+| ++.++++-...+ .|.+..... + .++..+......
T Consensus 188 ~~~i~a~------G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a 260 (354)
T 3a9g_A 188 NSPIWSY------GH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA 260 (354)
T ss_dssp TCCEEEE------CC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred CCcEEEE------cc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence 011111 11 2356899999 666655533222 233322110 0 122233112346
Q ss_pred eEEEEEC-------CCCCEEEEEeCCc-EEEEEcCCC-ccc--eEEecCCCCCCeeEEEEcCCCCEEEEEe
Q 009763 402 VTAISFS-------ENGYYLATAAHDG-VKLWDLRKL-KNF--RSFESSDSETPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 402 i~~l~~s-------~~~~~l~~~~~d~-i~iwd~~~~-~~~--~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 461 (526)
...+.|. .+|.++++....+ |..+++... ... ..+.. .....+..+++.|+|.++++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 7888884 4566666554444 888888753 221 12221 1135789999999997766654
No 352
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=1.6e-05 Score=57.48 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=40.3
Q ss_pred cccccCCCCCCc---eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcC
Q 009763 2 NCSISGEVPEEP---VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMD 48 (526)
Q Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 48 (526)
.|+|+.+....+ ++.| +||+|.+.+|.+|++.+.+||++..+++..
T Consensus 25 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp EETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 599999887776 6665 999999999999999999999999988753
No 353
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.82 E-value=3.6e-06 Score=66.82 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=40.9
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCc
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTM 47 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~ 47 (526)
.|+|+.+.+.+||+.| |||+|++.+|.+|+.. +.+||++..+++.
T Consensus 17 ~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILVEPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCSSCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCccCCcccCceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 6999999999999995 9999999999999987 4589999998864
No 354
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.81 E-value=0.0001 Score=78.09 Aligned_cols=216 Identities=7% Similarity=-0.047 Sum_probs=118.6
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEE-eCCCcEEEEeCCCCCc-eeeeEecccCccceEEEEEecC
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHAT 321 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~ 321 (526)
.+.|+..++........+.. ...+..++|.+.+..|+.+ ...+.|+.+++..... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 45788888876655444433 3456789999866665554 4567899998875100 0111111111223556788754
Q ss_pred C-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CC-CcEEEEECCCCceeeEecCC
Q 009763 322 N-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-ALVKIWDVKSQANVAKFDGH 398 (526)
Q Consensus 322 ~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~d-g~i~iwd~~~~~~~~~~~~~ 398 (526)
+ +++++-...+.|.++++........+.. .......++++|.+..|+.+. .. +.|..+++........+...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-----~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE-----QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCC-----SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeC-----CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence 4 4444445578899999876544333321 113456788999655454443 22 67888877533222222222
Q ss_pred CCCeEEEEECCCCCEEEEEeCC-c-EEEEEcCCCccceEEec-CCCCCCeeEEEEcCCCCEEEEEeCC---eEEEE
Q 009763 399 VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 468 (526)
Q Consensus 399 ~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 468 (526)
....+.|+|+|++..|+.+... . |..+|+.... ...+.. .........++++.+ .|+..... |..++
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEE
Confidence 3456789999976666655544 4 9999986433 233322 111223445666544 45544443 44444
No 355
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.79 E-value=1.6e-05 Score=59.88 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=39.1
Q ss_pred cccccCCCCCC---ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEE---PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|+|+.+.+.. +++.| |||+|.+.+|.+|+..+++||++..++.
T Consensus 42 ~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp EETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 59999887666 77776 9999999999999999999999998775
No 356
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.78 E-value=0.0081 Score=56.51 Aligned_cols=238 Identities=11% Similarity=0.120 Sum_probs=121.8
Q ss_pred cCCCCEEEEEeCC----CcEEEEeCCCCcEEEE--ecccccceeEEEEecCCCEEEEEeC----C-----CcEEEEeCCC
Q 009763 232 HYSKDVIATGGVD----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSA----D-----KTVRVWQGSE 296 (526)
Q Consensus 232 s~~~~~l~t~~~d----g~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~----d-----g~i~iwd~~~ 296 (526)
.-++.+++.|+.+ ..+.+||..+++-... +......- +++ .-++.+++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEE-EECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3456777887742 4688999876543221 11111111 222 226677777765 2 4688898876
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 371 (526)
. .+..+..+.........+.+ ++..++.|+.+ ..+.+||+.+......-... .......++.+ ++.+
T Consensus 100 ~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 100 N-QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML---TRRIGVGVAVL--NRLL 171 (308)
T ss_dssp T-EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS---SCCBSCEEEEE--TTEE
T ss_pred C-eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC---ccccceEEEEE--CCEE
Confidence 3 33333322221122222222 56667766643 46889999888654432211 11112222222 6778
Q ss_pred EEEEeCC-----CcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCccceEEec
Q 009763 372 LGTGTSE-----ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFES 438 (526)
Q Consensus 372 l~~g~~d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~ 438 (526)
++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ .+.+||+.+.+-...-..
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 8888765 468899987764322 11111122233333 66677776543 289999887543221111
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeec
Q 009763 439 SDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 439 ~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~ 483 (526)
.. ...-..+.. -++++++.|+.+ -.+|.++.....|..+..+.
T Consensus 250 p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 297 (308)
T 1zgk_A 250 KH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT 297 (308)
T ss_dssp SS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred CC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence 11 111112222 256777777643 34555555556777765554
No 357
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.78 E-value=0.067 Score=59.68 Aligned_cols=227 Identities=14% Similarity=0.080 Sum_probs=134.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC---------------------------
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD--------------------------- 331 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d--------------------------- 331 (526)
-++..+ ++.++|..+.....+ .++++. -...+..++++|..+.++.+..+
T Consensus 708 g~v~~~-~~~LrI~~i~~~~~~-~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1158)
T 3ei3_A 708 SLALAN-NSTLTIGTIDEIQKL-HIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVS 784 (1158)
T ss_dssp EEEEEC-SSCEEEEEECCSSSE-EEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEEC
T ss_pred cEEEEc-CCceEEEEecccCCe-eEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccc
Confidence 344433 456999887654332 333332 33578888898877765544311
Q ss_pred ----------------------CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEE---ccC-CcEEEEEe---------
Q 009763 332 ----------------------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF---HPD-GLILGTGT--------- 376 (526)
Q Consensus 332 ----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~l~~g~--------- 376 (526)
+.|++.|..+.+.+..+... ....+.+++. ..+ ..++++|+
T Consensus 785 ~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~----~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~ 860 (1158)
T 3ei3_A 785 SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL----QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAE 860 (1158)
T ss_dssp CCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC----TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSS
T ss_pred ccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC----CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCC
Confidence 23667777766666555422 1234555543 222 46888886
Q ss_pred -CCCcEEEEECCCCceeeEe-cCCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCC
Q 009763 377 -SEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (526)
Q Consensus 377 -~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 454 (526)
..|.|.+|++..++..... ....++|++++-- +| +|+++-...|++||+...+.++ ..... -..+..+.....+
T Consensus 861 ~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~-~~~i~~~~l~~~~ 936 (1158)
T 3ei3_A 861 PKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH-YNNIMALYLKTKG 936 (1158)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE-CCCSCEEEEEEET
T ss_pred CCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec-cccEEEEEEeccC
Confidence 3578999998744322211 1246788888744 45 5666665669999998765444 21110 1113333333457
Q ss_pred CEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 455 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.++++|.-- +.++.++........+. .......++++.|-.+ ..++.+..+|.|.++..+..
T Consensus 937 ~~I~vgD~~~Sv~~~~y~~~~~~L~~~a---~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 937 DFILVGDLMRSVLLLAYKPMEGNFEEIA---RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TEEEEEESSBCEEEEEEETTTTEEEEEE---ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTT
T ss_pred CEEEEEEhhheEEEEEEEcCCCeEEEEE---eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCC
Confidence 899998876 77777754333333322 2223667889988755 46777999999999988764
No 358
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.77 E-value=0.0092 Score=55.86 Aligned_cols=232 Identities=14% Similarity=0.228 Sum_probs=117.2
Q ss_pred CCEEEEEeCC----CcEEEEeCCCCcEEEE--ecccccceeEEEEecCCCEEEEEeCC-----CcEEEEeCCCCCceeee
Q 009763 235 KDVIATGGVD----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDGNYDCK 303 (526)
Q Consensus 235 ~~~l~t~~~d----g~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~ 303 (526)
+.+++.|+.+ ..+..||..+.+-... +...... .+++ .-++.+++.|+.+ ..+.+||..+. .+..+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTT-EEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCC-ceeeC
Confidence 4566666643 4588888877643222 1111111 1222 2267777777754 35888998763 34443
Q ss_pred EecccCccceEEEEEecCCCEEEEEECCC-----eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
..+.........+.+ ++..++.|+.++ .+.+||+.+......-... ..... .+++. -++.+++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~-~~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN---TRRSS-VGVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS---SCCBS-CEEEE-ETTEEEEECCEE
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC---CcccC-ceEEE-ECCEEEEEeCCC
Confidence 333222122222222 567777777653 5788999888765442211 11111 22222 267777777643
Q ss_pred -------CcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCccceEEecCCCCC
Q 009763 379 -------ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSET 443 (526)
Q Consensus 379 -------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~~ 443 (526)
..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ .+.+||+.+.+-... .......
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r 242 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-ADMNMCR 242 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-CCCSSCC
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeC-CCCCCcc
Confidence 358899998764322 22211122223333 56777776543 288999887543222 1111111
Q ss_pred CeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeee
Q 009763 444 PTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIK 480 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~ 480 (526)
.-..++. .++.+++.|+.+ -.+|.++.....|..+.
T Consensus 243 ~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 243 RNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp BSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred ccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 1112222 256777777643 22444444455676654
No 359
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.77 E-value=0.0037 Score=58.53 Aligned_cols=229 Identities=10% Similarity=0.111 Sum_probs=116.2
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCe-
Q 009763 276 EGDLFLTGS-AD-----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGI- 343 (526)
Q Consensus 276 ~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~- 343 (526)
++.+++.|+ .+ ..+.+||..+. .+..+..+.........+. .++..++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36788888763 3333322222111112222 256677777754 468999998876
Q ss_pred --EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC-----CcEEEEECCCCcee--eEecCCCCCeEEEEECCCCCEE
Q 009763 344 --CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYL 414 (526)
Q Consensus 344 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l 414 (526)
....-... ........+. .++.+++.|+.+ ..+.+||+.+.+-. ..+......-..+.+ +++++
T Consensus 91 ~~W~~~~~~p---~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 163 (301)
T 2vpj_A 91 GVWYSVAPMN---VRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIY 163 (301)
T ss_dssp CCCEEECCCS---SCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEE
T ss_pred CeeEECCCCC---CCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEE
Confidence 43332111 1111122222 267788888754 35889998876432 222211222222333 66677
Q ss_pred EEEeCC------cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeec
Q 009763 415 ATAAHD------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFP 483 (526)
Q Consensus 415 ~~~~~d------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~ 483 (526)
+.|+.+ .+.+||+.+.+-...-...........+. .++.+++.|+.+ -.+|.++.....|..+..+.
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 776543 28899987754332211111111112222 256777777643 23444444456777766543
Q ss_pred CCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEeeCCCC
Q 009763 484 DLSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 520 (526)
Q Consensus 484 ~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~l~~~ 520 (526)
.. ......+.+ ++++++.|+.+ ..|.+||+..+
T Consensus 242 ~~--r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 32 222233333 67777888765 35778887653
No 360
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.77 E-value=0.0091 Score=57.06 Aligned_cols=194 Identities=13% Similarity=0.162 Sum_probs=116.5
Q ss_pred CeEEEEecCCCCEEEEE------------eCCCcEEEEeCCC--CcEEE-Eecc-----cccceeEEEEec--CCC-EEE
Q 009763 225 GIVSLDIHYSKDVIATG------------GVDTNAVLFDRPS--GQIVT-TLSG-----HSKKVTSVKFVT--EGD-LFL 281 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~------------~~dg~v~vwd~~~--~~~~~-~~~~-----h~~~V~~l~~~~--~~~-~l~ 281 (526)
+.-.+...++|..++++ ..+|.|.++|..+ ++... .+.+ ..-....+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566677876555544 2689999999873 23211 2222 233567787766 454 344
Q ss_pred EE-eC--CCcEEEEeCCCCC-ceeeeEecccC-ccceEEEEEecCCCEEEEEE-----------------CCCeEEEEeC
Q 009763 282 TG-SA--DKTVRVWQGSEDG-NYDCKHTLKDH-TAEVQAVTVHATNKYFVTAS-----------------LDNTWCFYDL 339 (526)
Q Consensus 282 s~-s~--dg~i~iwd~~~~~-~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s-----------------~dg~i~iwd~ 339 (526)
++ .. +.+|.+|++...+ ....+..+.+. -...+.+.+.++|.++++.. ..|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44 33 5678888876543 23344444432 24678999999998777754 1245666665
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEEECCC-Cce--eeEecCCCCCeEEEEECC-CCCEE
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSE-NGYYL 414 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~~~~l 414 (526)
. +....... -...+.++|+||++.|+++. ..+.|..|++.. ++. ...+. ..+....+++.+ +|++.
T Consensus 211 ~--~~~~~~~~------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 211 N--DVRVVAEG------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp T--CCEEEEEE------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEE
T ss_pred C--eEEEeecC------CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEE
Confidence 3 22211111 13578999999998777664 567899999863 322 22332 245678899999 59887
Q ss_pred EEEeCCc--EEEEEc
Q 009763 415 ATAAHDG--VKLWDL 427 (526)
Q Consensus 415 ~~~~~d~--i~iwd~ 427 (526)
+++..++ |..||-
T Consensus 282 va~~~~g~~v~~~~P 296 (355)
T 3sre_A 282 VGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEESCHHHHHSCCT
T ss_pred EEecCCceEEEEECC
Confidence 7776564 444443
No 361
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=4.8e-06 Score=59.42 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=44.6
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
..|+|+.+.+.+ ++.| +||+|.+.+|.+|+..+.+||++..++...+.+.+
T Consensus 16 ~~C~IC~~~~~~-~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 16 EECCICMDGRAD-LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCSSSCCSCCS-EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCeeCCcCccC-cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 369999999999 8885 99999999999999988999999999887665544
No 362
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.74 E-value=0.03 Score=53.78 Aligned_cols=245 Identities=10% Similarity=0.054 Sum_probs=121.9
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec----ccCccceEEEEEecC---CCEEEEE-EC-------
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFVTA-SL------- 330 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~l~s~-s~------- 330 (526)
.....|+|.|+|+.|+++...|.|++++.... ....+..+ .........|+++|+ +..|..+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34689999999983444556799999985321 10111111 112345789999996 4444443 22
Q ss_pred CCeEEEEeCCCC--e--EEEEe-ecCCC-CCCCCCeeEEEEccCCcEEEEEeC-------------CCcEEEEECCCCc-
Q 009763 331 DNTWCFYDLSSG--I--CLTQV-SDAGT-DGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQA- 390 (526)
Q Consensus 331 dg~i~iwd~~~~--~--~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~~- 390 (526)
...|..|++..+ . ....+ ..... .........+.|.|||.++++.+. .|.|.-+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235777776543 1 11111 11110 011122457999999976666433 2457777764320
Q ss_pred -----------eeeEecCCCCCeEEEEECC-CCCEEEEEeCC-c-EEEEEcCCCcc------------------------
Q 009763 391 -----------NVAKFDGHVGAVTAISFSE-NGYYLATAAHD-G-VKLWDLRKLKN------------------------ 432 (526)
Q Consensus 391 -----------~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d-~-i~iwd~~~~~~------------------------ 432 (526)
....+.........++|+| +|.++++-... + =.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1111211123478899999 56555543321 1 22222222111
Q ss_pred -------ceEEecCCCCCCeeEEEEcC-------CCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcC
Q 009763 433 -------FRSFESSDSETPTNSVDFDH-------SGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 498 (526)
Q Consensus 433 -------~~~~~~~~~~~~i~~i~~s~-------~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (526)
...+. +...+..+.|.. +|.++++.-..-+||.+............+.. .....+..+++.|
T Consensus 257 ~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~p 332 (353)
T 2g8s_A 257 VAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT-DRGQRIRDVRTGP 332 (353)
T ss_dssp CTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG-GGCCCEEEEEECT
T ss_pred CCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc-CCCCceeEEEECC
Confidence 00111 123466777764 46666555444555554332211111112211 1134789999999
Q ss_pred CCCEEEEEe-CCCcEEEeeC
Q 009763 499 DAKYIAVGS-MDRNLRVFGL 517 (526)
Q Consensus 499 ~~~~l~s~~-~dg~v~iw~l 517 (526)
||.+.++.. .+|. ||.+
T Consensus 333 dG~lyv~td~~~g~--I~ri 350 (353)
T 2g8s_A 333 DGYLYVLTDESSGE--LLKV 350 (353)
T ss_dssp TSCEEEEECSTTEE--EEEE
T ss_pred CCcEEEEEeCCCCE--EEEE
Confidence 998665443 3454 4544
No 363
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.74 E-value=1.6e-05 Score=64.94 Aligned_cols=52 Identities=19% Similarity=0.393 Sum_probs=47.0
Q ss_pred CcccccCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.+...+| ++. .+||+|.+.+|++|++.+.+||++..++..++++++
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 3599999988877 665 699999999999999999999999999999999887
No 364
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.72 E-value=0.00022 Score=75.54 Aligned_cols=219 Identities=12% Similarity=0.031 Sum_probs=119.5
Q ss_pred CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCC----CeEEEEeecCCCCCCCCCe
Q 009763 286 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSS----GICLTQVSDAGTDGRPEGY 360 (526)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~v 360 (526)
.+.|+..++... .....+. ....+..|+|++.+..|+.+. ..+.|..+++.. ......+. ......
T Consensus 385 ~~~I~~id~~~~---~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-----~~~~~P 455 (699)
T 1n7d_A 385 RHEVRKMTLDRS---EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RDIQAP 455 (699)
T ss_dssp TTC-CEECTTSC---CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-----SCC--C
T ss_pred ccceEEEeCCCC---cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-----CCCCCc
Confidence 457888887664 2222222 234567899998777666654 457899999875 11111111 111234
Q ss_pred eEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe-CC-c-EEEEEcCCCccceEE
Q 009763 361 TSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HD-G-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 361 ~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d-~-i~iwd~~~~~~~~~~ 436 (526)
..+++.+ .++++++-...+.|.++++........+.........++++|.+.+|+.+. .. + |..+++.... ...+
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE
Confidence 5678885 455555555678899999875543333333334567899998655554443 22 3 8777775432 2222
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEe
Q 009763 437 ESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 515 (526)
Q Consensus 437 ~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 515 (526)
... .......|+|+|++..|+.+... -+|+.++........+..... .......|++..+ .++++....+.|..+
T Consensus 535 ~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~--~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 535 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS--SCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred EeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC--cCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 211 13456789999988777777655 444444332222222221111 1223445566443 344444556788888
Q ss_pred eCC
Q 009763 516 GLP 518 (526)
Q Consensus 516 ~l~ 518 (526)
+..
T Consensus 611 d~~ 613 (699)
T 1n7d_A 611 NRL 613 (699)
T ss_dssp ETT
T ss_pred Ecc
Confidence 754
No 365
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.69 E-value=0.072 Score=55.39 Aligned_cols=225 Identities=9% Similarity=-0.021 Sum_probs=134.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRP 357 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 357 (526)
+|+.+ ..+.|+..++.+... .....+. .-..+..|+|++.+..++.+. .++.|..+++........+.. + .
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~-~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----g-~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNN-NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----G-L 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTC-EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----S-C
T ss_pred EEEEE-eCCcEEEEECCCCCc-ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----C-C
Confidence 34443 446789999876421 2222222 234678999999776666554 578899999876543333321 1 1
Q ss_pred CCeeEEEEccC-CcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEe-C-Cc-EEEEEcCCCccc
Q 009763 358 EGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-H-DG-VKLWDLRKLKNF 433 (526)
Q Consensus 358 ~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~-d~-i~iwd~~~~~~~ 433 (526)
.....+++.+. ++++++-...+.|.+.++........+...-.....|++.|...+|+.+. . .. |...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 34678899875 55556656678899999865443323333445679999998544555444 2 23 888887654433
Q ss_pred eEEecCCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 009763 434 RSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 512 (526)
Q Consensus 434 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 512 (526)
..+. .......+++++++..|+.+... -+|+.++........+.. . .....++++.. +.+.++-...+.|
T Consensus 160 ~l~~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~--~---l~~P~glav~~-~~ly~tD~~~~~I 230 (628)
T 4a0p_A 160 TLVP---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD--D---LPHPFGLTQYQ-DYIYWTDWSRRSI 230 (628)
T ss_dssp EEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE--C---CSCEEEEEEET-TEEEEEETTTTEE
T ss_pred EEEC---CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec--c---CCCceEEEEEC-CEEEEecCCCCEE
Confidence 2232 24578899999998888888766 444444332222222221 1 23456777764 3444444446788
Q ss_pred EEeeCCCC
Q 009763 513 RVFGLPGN 520 (526)
Q Consensus 513 ~iw~l~~~ 520 (526)
...+..++
T Consensus 231 ~~~dk~tg 238 (628)
T 4a0p_A 231 ERANKTSG 238 (628)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 88775444
No 366
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.67 E-value=6.6e-05 Score=53.19 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=38.0
Q ss_pred cccccCCCCC---CceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCc
Q 009763 2 NCSISGEVPE---EPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM 47 (526)
Q Consensus 2 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (526)
.|+|+.+... .+++.| +||+|.+.+|.+|+..+++||++..+++.
T Consensus 16 ~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 5999977653 456664 99999999999999999999999988764
No 367
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.65 E-value=0.013 Score=54.92 Aligned_cols=228 Identities=14% Similarity=0.170 Sum_probs=115.2
Q ss_pred CCEEEEEeCC----CcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEE
Q 009763 277 GDLFLTGSAD----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQ 347 (526)
Q Consensus 277 ~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~ 347 (526)
+.+++.|+.+ ..+.+||..+. .+..+..+......- +++.. ++..++.|+.+ ..+.+||..+.+....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRCRA-GMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCBSC-EEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccccc-eEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3445555533 35778887764 333332222111111 22222 56677777654 3588999988875543
Q ss_pred eecCCCCCCCCCeeEEEEccCCcEEEEEeCCC-----cEEEEECCCCceeeE--ecCCCCCeEEEEECCCCCEEEEEeC-
Q 009763 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAH- 419 (526)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~- 419 (526)
-... ...... +++. .++.+++.|+.++ .+.+||+.+.+-... +.........+.+ ++++++.|+.
T Consensus 93 ~~~p---~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 165 (302)
T 2xn4_A 93 ANMR---DRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYD 165 (302)
T ss_dssp CCCS---SCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred CCCC---ccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCC
Confidence 3211 111112 2222 2677888887653 578899877643222 2111122222333 5666666542
Q ss_pred -------CcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCCCC
Q 009763 420 -------DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSG 487 (526)
Q Consensus 420 -------d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~ 487 (526)
+.+.+||+.+.+-...-......... +++. -++.+++.|+.+ -.+|.++.....|..+......
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 22889998775432221111111111 2222 256777777643 2344444455678777654432
Q ss_pred CcceEEEEEcCCCCEEEEEeCCC-----cEEEeeCCCC
Q 009763 488 TGKATCVKFGPDAKYIAVGSMDR-----NLRVFGLPGN 520 (526)
Q Consensus 488 ~~~v~~~~~s~~~~~l~s~~~dg-----~v~iw~l~~~ 520 (526)
......+.+ ++++++.|+.++ .|.+||+..+
T Consensus 242 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222333 677788887654 4888887653
No 368
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=6.1e-05 Score=54.24 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=37.9
Q ss_pred cccccCCCCCCce---EeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPV---VSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|+|+.+.+..|. +.| +||+|.+.+|.+|++.+.+||++..++.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp BCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 5999999877653 335 9999999999999999999999998775
No 369
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.62 E-value=0.043 Score=50.99 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=138.8
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEeccc
Q 009763 229 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 308 (526)
Q Consensus 229 ~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 308 (526)
.-.+|..+.+|.-. ..++.+||+++...+..+.-. ..|.-=.|-.+.. |+..+. ..|.-|++.... .+.+.+..
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~-L~lVT~-taVyHWs~~~~s--~P~kvFdR 145 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVTD-NAVYHWSMEGES--QPVKMFDR 145 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSE-EEEEES-SEEEEEESSTTC--CCEEEEEC
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCe-EEEEcC-CcEEEEcccCCC--CCceeeec
Confidence 34578888777765 678999999998888877643 4677777765544 444443 579999997643 44444444
Q ss_pred Cc----cceEEEEEecCCCEEEEEEC-------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC-----cEE
Q 009763 309 HT----AEVQAVTVHATNKYFVTASL-------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-----LIL 372 (526)
Q Consensus 309 h~----~~v~~l~~~p~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l 372 (526)
|. ..|..-..+++.+.++..+- .|.+.+|..+.+.... +. +|..... .+-.+| .++
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ie-----Ghaa~F~--~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IE-----GHAASFA--QFKMEGNAEESTLF 217 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE-EC-----CSEEEEE--EECCTTCSSCEEEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce-ee-----eeeeeeE--EEecCCCCCCceEE
Confidence 43 45666677888887655432 3778899988764322 21 2221111 121122 233
Q ss_pred EEEeC---CCcEEEEECCCC---ce------eeEe---cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEE
Q 009763 373 GTGTS---EALVKIWDVKSQ---AN------VAKF---DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 436 (526)
Q Consensus 373 ~~g~~---dg~i~iwd~~~~---~~------~~~~---~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 436 (526)
+.+.. .+.++|.++... .. +..+ +...+...++..++.-..+..-+..| |.+||+.++.++..-
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 33322 258888888432 11 1111 11245567788888777888888888 999999999998777
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEE
Q 009763 437 ESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (526)
Q Consensus 437 ~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 469 (526)
... ..+|...+.+.+..-+++....+.|+.+
T Consensus 298 rIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 298 RIS--GETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp ECC--SSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred ccC--CCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 765 4456555555454455555555555554
No 370
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.59 E-value=0.099 Score=54.34 Aligned_cols=196 Identities=7% Similarity=-0.054 Sum_probs=120.0
Q ss_pred CCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCcee
Q 009763 224 PGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYD 301 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l-~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~ 301 (526)
..+..++|++.+..| ++-..++.|..+++........+.........+++.+.+. ++++-...+.|.+.++..... .
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-Q 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-E
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-E
Confidence 357899999866554 4555678899998876544444443334577899987554 445555678899999876421 1
Q ss_pred eeEecccCccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEE-eCC
Q 009763 302 CKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE 378 (526)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~d 378 (526)
.+ +...-.....|+++|...+|+.... .+.|...++.......... .-.....+++++++..|+.+ ...
T Consensus 116 ~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~------~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 116 VL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP------NVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------SCSSEEEEEEETTTTEEEEEETTT
T ss_pred EE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC------CCCCcceEEEccccCEEEEEECCC
Confidence 11 2233355789999997666666653 5678888876554333332 12467899999976555555 456
Q ss_pred CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC
Q 009763 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 430 (526)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~ 430 (526)
+.|..+|+..... ..+.........+++.. ++++++-...+ |...|..++
T Consensus 188 ~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 188 NLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp TEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 7899999865433 23332333456677654 33333332233 666665443
No 371
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.55 E-value=0.02 Score=53.95 Aligned_cols=225 Identities=14% Similarity=0.141 Sum_probs=115.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEEC----C-------CeEEEEeCCCCeEEEE
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----D-------NTWCFYDLSSGICLTQ 347 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~----d-------g~i~iwd~~~~~~~~~ 347 (526)
+++.|+ ..+.+||..+. .+.. ..+..............++..++.|+. + ..+..||..+++....
T Consensus 7 l~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 56899998874 3332 333222122233333447788888873 1 1278899988875432
Q ss_pred eecCCCCCCCCCeeEEEEccCCcEEEEEeCC--------CcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEEE
Q 009763 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATA 417 (526)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~ 417 (526)
-... ..... .+++. -++.+++.|+.+ ..+.+||..+.+-.. .+......-..+.+ ++++++.|
T Consensus 83 ~~~p---~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 155 (315)
T 4asc_A 83 PPLP---SPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIG 155 (315)
T ss_dssp CCBS---SCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CCCC---cchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEe
Confidence 2111 10011 12222 267777777742 468999998764221 22111112222232 56676776
Q ss_pred eC-C------cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCC
Q 009763 418 AH-D------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDL 485 (526)
Q Consensus 418 ~~-d------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~ 485 (526)
+. + .+.+||..+.+-...-.... ...-.+++. -++++++.|+.+ -.+|.++.....|..+......
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 233 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE 233 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc
Confidence 65 1 28899988754322111111 111112222 256777777654 3456666666778877654432
Q ss_pred CCCcceEEEEEcCCCCEEEEEeCCC--------------cEEEeeCCCC
Q 009763 486 SGTGKATCVKFGPDAKYIAVGSMDR--------------NLRVFGLPGN 520 (526)
Q Consensus 486 ~~~~~v~~~~~s~~~~~l~s~~~dg--------------~v~iw~l~~~ 520 (526)
......+.+ ++++++.|+.++ .|.+||+..+
T Consensus 234 --r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 --RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp --CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred --ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 222233333 667777777642 3667777654
No 372
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.55 E-value=0.019 Score=55.22 Aligned_cols=237 Identities=11% Similarity=0.023 Sum_probs=125.7
Q ss_pred CeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEe-------cccccceeEEEEecC---CCEEEEEe-C-------
Q 009763 225 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTL-------SGHSKKVTSVKFVTE---GDLFLTGS-A------- 285 (526)
Q Consensus 225 ~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~~~~~~~-------~~h~~~V~~l~~~~~---~~~l~s~s-~------- 285 (526)
.-..|+|.|+|+ +++ +...|.|++++.. +.....+ .........++|+|+ +..|+.+. .
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457999999999 555 4567999999853 3321111 112345689999995 44444432 2
Q ss_pred CCcEEEEeCCCCC-c---eeee-Eeccc---CccceEEEEEecCCCEEEEEECC-------------CeEEEEeCCCCe-
Q 009763 286 DKTVRVWQGSEDG-N---YDCK-HTLKD---HTAEVQAVTVHATNKYFVTASLD-------------NTWCFYDLSSGI- 343 (526)
Q Consensus 286 dg~i~iwd~~~~~-~---~~~~-~~~~~---h~~~v~~l~~~p~~~~l~s~s~d-------------g~i~iwd~~~~~- 343 (526)
...|..|+..... . .+.+ ..+.. .......|.|.|+|.++++.+.. |.|.-+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2346666654321 1 1111 11211 11123579999999666654332 456666654320
Q ss_pred -----------EEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeC-CCcEEEEECCCCc--------------------
Q 009763 344 -----------CLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS-EALVKIWDVKSQA-------------------- 390 (526)
Q Consensus 344 -----------~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~-dg~i~iwd~~~~~-------------------- 390 (526)
....+.. ++ .....++|+| +|.++++-.. ++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~----G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSY----GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp TTCTTTTSTTSCTTEEEE----CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCcCCCCCCccEEEE----cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 0000100 11 2467899999 6665554321 1111222111111
Q ss_pred -----------eeeEecCCCCCeEEEEECC-------CCCEEEEEeCCc-EEEEEcCCCccceEEecC-CCCCCeeEEEE
Q 009763 391 -----------NVAKFDGHVGAVTAISFSE-------NGYYLATAAHDG-VKLWDLRKLKNFRSFESS-DSETPTNSVDF 450 (526)
Q Consensus 391 -----------~~~~~~~~~~~i~~l~~s~-------~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-~~~~~i~~i~~ 450 (526)
++..+. +...+..+.|.. +|.++++....+ |...++..++........ .....+..+++
T Consensus 252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 111222 223567788864 466666554455 888887755433222211 11347899999
Q ss_pred cCCCCEEEEEeC-CeEEEEE
Q 009763 451 DHSGSYLAVASA-DIRVYQV 469 (526)
Q Consensus 451 s~~~~~l~~~~~-di~v~~~ 469 (526)
.|+|.++++... +.+||.+
T Consensus 331 ~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 331 GPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp CTTSCEEEEECSTTEEEEEE
T ss_pred CCCCcEEEEEeCCCCEEEEE
Confidence 999997766553 4888876
No 373
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.52 E-value=1.5e-05 Score=53.77 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=38.9
Q ss_pred CcccccCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCcC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMD 48 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 48 (526)
+.|+|+.+.+.+|++.| +||+|.+.+|.+ ...+||++..+++..
T Consensus 7 ~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLLP-CLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBCCSCST-TSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCCeEEcC-CCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 46999999999999997 999999999988 356899999988754
No 374
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.47 E-value=0.073 Score=49.96 Aligned_cols=229 Identities=13% Similarity=0.117 Sum_probs=115.4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEE-EecccccceeEEEEecCCCEEEEEeC-----C------CcEEEEeCCCCCceeeeE
Q 009763 237 VIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA-----D------KTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~-----d------g~i~iwd~~~~~~~~~~~ 304 (526)
+++.|+ ..+..||..+++-.. .+..............++.+++.|+. . ..+.+||..+. .+..+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC-eEEECC
Confidence 445555 578999998776432 22211122233333457778888873 1 12778887763 333332
Q ss_pred ecccCccceEEEEEecCCCEEEEEECC--------CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
.+....... +++.. ++..++.|+.+ ..+.+||+.+.+....-... ..... .+++ ..++.+++.|+
T Consensus 84 ~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~-~~~~-~~~~~iyv~GG 156 (315)
T 4asc_A 84 PLPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP---YVVYG-HTVL-SHMDLVYVIGG 156 (315)
T ss_dssp CBSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS---SCCBS-CEEE-EETTEEEEECC
T ss_pred CCCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC---Ccccc-eeEE-EECCEEEEEeC
Confidence 222111111 22222 56666666632 45899999988654332111 11111 1222 24677888887
Q ss_pred C-C-----CcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCccceEEecCCCC
Q 009763 377 S-E-----ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 377 ~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~ 442 (526)
. + ..+.+||+.+.+-.. .+......-..+.+ ++++++.|+.+ .+.+||+.+.+-...-.... .
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~ 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-E 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-C
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC-c
Confidence 6 2 468999988764322 12111112223333 66677776643 27889987754322211111 1
Q ss_pred CCeeEEEEcCCCCEEEEEeCC--------------eEEEEEecccCcceee
Q 009763 443 TPTNSVDFDHSGSYLAVASAD--------------IRVYQVASVKADWNCI 479 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~d--------------i~v~~~~~~~~~~~~~ 479 (526)
..-..++. -++++++.|+.+ -.+|.++.....|..+
T Consensus 234 r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 234 RSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp CBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 11112222 256777777642 2355565556677776
No 375
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.47 E-value=0.023 Score=53.35 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=113.1
Q ss_pred CCCEEEEEeC----CCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEEC----C-----CeEEEEeCCCC
Q 009763 276 EGDLFLTGSA----DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----D-----NTWCFYDLSSG 342 (526)
Q Consensus 276 ~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~----d-----g~i~iwd~~~~ 342 (526)
++.+++.|+. -..+.+||..+. .+..+..+......- +++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 3445555542 135777887653 233322222111111 22222 5666666665 2 46889999888
Q ss_pred eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC-----CcEEEEECCCCceee--EecCCCCCeEEEEECCCCCEEE
Q 009763 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLA 415 (526)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~ 415 (526)
.....-... ........+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++.+++
T Consensus 101 ~W~~~~~~p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 101 QWSPCAPMS---VPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp EEEECCCCS---SCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred eEeECCCCC---cCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 654432211 11112222222 67788887644 368899988764322 12211122223333 566767
Q ss_pred EEeCC------cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecC
Q 009763 416 TAAHD------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPD 484 (526)
Q Consensus 416 ~~~~d------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~ 484 (526)
.|+.+ .+.+||+.+.+-...-...........+.+ ++.+++.|+.+ -.+|.++.....|..+..+..
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 66543 288999876543221111111111222222 56777777543 334444444567777665433
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEeeCCCC
Q 009763 485 LSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 520 (526)
Q Consensus 485 ~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~l~~~ 520 (526)
. ......+.+ ++++++.|+.+ ..|.+||+..+
T Consensus 252 ~--r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 252 R--RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp C--CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred C--ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 122223333 67777888754 35778887654
No 376
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.41 E-value=0.00012 Score=56.46 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=39.4
Q ss_pred cccccCCCCCCc-----------------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCc
Q 009763 2 NCSISGEVPEEP-----------------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM 47 (526)
Q Consensus 2 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (526)
.|+|+.+...++ ++.+.|||+|-+.+|.+||..+.+||++..+...
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 489988887765 5666799999999999999999999999988654
No 377
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.41 E-value=0.1 Score=50.41 Aligned_cols=229 Identities=13% Similarity=0.163 Sum_probs=143.1
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecc
Q 009763 228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK 307 (526)
Q Consensus 228 ~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 307 (526)
+.-.+|..+.||.-. ..++.+||+++...+..+.-. ..|.-=.|-.+.. |+..+ +..|.-|++.... .+.+.+.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s--~P~kvFd 143 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVT-DNAVYHWSMEGES--QPVKMFD 143 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTE-EEEEC-SSEEEEEESSSSC--CCEEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCe-EEEEc-CCeeEEecccCCC--Cchhhee
Confidence 344677777777655 679999999998888877644 4577777775554 44433 3579999997643 4455554
Q ss_pred cCc----cceEEEEEecCCCEEEEEEC-------CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC---CcEEE
Q 009763 308 DHT----AEVQAVTVHATNKYFVTASL-------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---GLILG 373 (526)
Q Consensus 308 ~h~----~~v~~l~~~p~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~ 373 (526)
.|. ..|..-..+++.+.++..|- .|.+.+|..+.+.... +. +|......+.+..+ ..+++
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ie-----Ghaa~F~~~~~~g~~~~~~lf~ 217 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IE-----GHAASFAQFKMEGNAEESTLFC 217 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-EC-----CSEEEEEEEECTTCSSEEEEEE
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-he-----eeeeeeEEEecCCCCCCceEEE
Confidence 443 45667777888887665432 4778899988764322 21 33222222222111 12344
Q ss_pred EEeCC---CcEEEEECCCC---c-----eeeE-e---cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEe
Q 009763 374 TGTSE---ALVKIWDVKSQ---A-----NVAK-F---DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (526)
Q Consensus 374 ~g~~d---g~i~iwd~~~~---~-----~~~~-~---~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 437 (526)
.+... +.++|.++... . .... + +...+...++..++.-..+..-+..| |.+||+.++.++..-.
T Consensus 218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 44332 78999988543 1 1111 1 12245567888888877888888888 9999999999988777
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEe
Q 009763 438 SSDSETPTNSVDFDHSGSYLAVASADIRVYQVA 470 (526)
Q Consensus 438 ~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 470 (526)
.. ..+|...+.+....-+++....+.|+.+.
T Consensus 298 Is--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 298 IS--GETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp CC--SSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred cc--CCceEEecccCCCCcEEEEccCceEEEEE
Confidence 65 45666555555555555555666666553
No 378
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.40 E-value=9.9e-05 Score=53.37 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=41.8
Q ss_pred CcccccCCCCC--CceEeC-CCCeeeeHHHHHHHHHh-cCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPE--EPVVSK-NSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+.++.. ++++.| .+||.|++.+|.++.+. ++.||.+.++.+..+++-.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 36999999763 455543 49999999999999854 4689999999998776533
No 379
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.37 E-value=0.29 Score=54.60 Aligned_cols=279 Identities=13% Similarity=0.143 Sum_probs=153.7
Q ss_pred CCCeEEEEecCC------CCEEEEEeC-CCcEEEEeCCCCcEEEEecc-cccceeEEEEec--CCCEEEEEeCCCcEEEE
Q 009763 223 KPGIVSLDIHYS------KDVIATGGV-DTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVT--EGDLFLTGSADKTVRVW 292 (526)
Q Consensus 223 ~~~I~~~~~s~~------~~~l~t~~~-dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~--~~~~l~s~s~dg~i~iw 292 (526)
...|.|+++.+. ++++++|.. |++|+|+++.+.+.+....- ......++.+.. ...+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 357999999863 369999997 99999999988766544321 122345555432 33578899999998766
Q ss_pred eCCCC-CceeeeE-ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCe-eEEEEccCC
Q 009763 293 QGSED-GNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY-TSAAFHPDG 369 (526)
Q Consensus 293 d~~~~-~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~ 369 (526)
.+... +.....+ .+-| ..++.-..+...+..-+.+..+..+.+|.-+..-....+. . ..+ ....|+...
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~---~----~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN---L----KEVNYMCPLNSDG 704 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS---S----SCCCEEEEECCSS
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC---h----HHhceEeccCccc
Confidence 55431 1222222 2223 3466555555455544444456666666544321212121 1 123 333454321
Q ss_pred --cEEEEEeCCCcEEEEECCCCc--eeeEecCCCCCeEEEEECCCCCEEEEEeC--------------------------
Q 009763 370 --LILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAH-------------------------- 419 (526)
Q Consensus 370 --~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-------------------------- 419 (526)
.-++..+ ++.++|..+.... .+.++. -...+..++++|..+.++++..
T Consensus 705 ~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 705 YPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp STTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEE
T ss_pred CCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhc
Confidence 2333333 4558888775332 223333 2346777778776554433221
Q ss_pred ----------------------C-c-EEEEEcCCCccceEEecCCCCCCeeEEE---EcC-CCCEEEEEe-----C-C--
Q 009763 420 ----------------------D-G-VKLWDLRKLKNFRSFESSDSETPTNSVD---FDH-SGSYLAVAS-----A-D-- 463 (526)
Q Consensus 420 ----------------------d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~---~s~-~~~~l~~~~-----~-d-- 463 (526)
. + |+++|-.+.+.+..+..... ..+.+++ |.. ...++++|+ . +
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~ 861 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP 861 (1158)
T ss_dssp ECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSC
T ss_pred ccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCC
Confidence 0 2 67788777777766665532 3344443 332 257888886 1 1
Q ss_pred ----eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 464 ----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 464 ----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
+.+|++. ....+.+..... .+.|++++-- +|+ |++|- ...|++|++...
T Consensus 862 ~~Gri~vf~v~--~~kL~lv~~~~v---~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 862 KQGRIVVFQYS--DGKLQTVAEKEV---KGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTE 914 (1158)
T ss_dssp CCEEEEEEEEE--TTEEEEEEEEEE---SSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTT
T ss_pred CceEEEEEEEE--CCEEEEEEEEEc---CCcCEEEeee-CCE-EEEEc-CCEEEEEECCCC
Confidence 5566664 233444433322 6678887643 454 44443 478999999754
No 380
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.34 E-value=0.091 Score=49.37 Aligned_cols=225 Identities=14% Similarity=0.155 Sum_probs=111.4
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEEC----CC-------eEEEEeCCCCeEEEE
Q 009763 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----DN-------TWCFYDLSSGICLTQ 347 (526)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~ 347 (526)
+++.|+. .+..||..+. .+.. ..+..............++..++.|+. ++ .+..||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~-~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMEN-ECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTT-EEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCC-ceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 3788988774 2322 222211112222233446777777773 12 277889888766443
Q ss_pred eecCCCCCCCCCeeEEEEccCCcEEEEEeCC-------CcEEEEECCCCceeeE--ecCCCCCeEEEEECCCCCEEEEEe
Q 009763 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-------ALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~ 418 (526)
-... . ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-... +......-..+. .++++++.|+
T Consensus 94 ~~~p---~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 166 (318)
T 2woz_A 94 PPLP---S-ARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGG 166 (318)
T ss_dssp SCBS---S-CBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECC
T ss_pred CCCC---c-cccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcC
Confidence 2111 1 1111222222 67778887754 2578899887643321 111111112222 3666666665
Q ss_pred C-------CcEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEEecccCcceeeeeecCCC
Q 009763 419 H-------DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLS 486 (526)
Q Consensus 419 ~-------d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~ 486 (526)
. +.+.+||+.+.+-...-... ....-.+++. -++++++.|+.+ -.+|.++.....|..+..+...
T Consensus 167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 243 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE- 243 (318)
T ss_dssp EESSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-
T ss_pred CCCCCCccceEEEEcCCCCEEEECCCCC-CCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 3 12899998875432221111 1111122222 256777777643 3455555556678877655432
Q ss_pred CCcceEEEEEcCCCCEEEEEeCC--------------CcEEEeeCCCC
Q 009763 487 GTGKATCVKFGPDAKYIAVGSMD--------------RNLRVFGLPGN 520 (526)
Q Consensus 487 ~~~~v~~~~~s~~~~~l~s~~~d--------------g~v~iw~l~~~ 520 (526)
......+.+ ++++++.|+.+ ..+.+||+..+
T Consensus 244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 122222333 56777777754 35777887653
No 381
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.33 E-value=0.00024 Score=49.23 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=42.9
Q ss_pred cccccCCCCCCceEe--CCCCee-eeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 2 NCSISGEVPEEPVVS--KNSGLL-FEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
.|.|+.+-+.++|+. | +||. |...++.++.+.+++||++.++++ +++.+
T Consensus 10 ~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i 61 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLT 61 (64)
T ss_dssp CCTTTSSSCSCEEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEE
T ss_pred CCCcCCCCCCCEEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEee
Confidence 599999999999987 7 9999 899999999999999999998874 44444
No 382
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.33 E-value=0.16 Score=50.54 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=62.5
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEeccc------CccceEEEEEecC---CCEEEEEEC------
Q 009763 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD------HTAEVQAVTVHAT---NKYFVTASL------ 330 (526)
Q Consensus 266 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~p~---~~~l~s~s~------ 330 (526)
...+.++|.|+|+++++-...+.|++++..++ ....+..+.. ....+..|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG-SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC-cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34679999999997776544457888876443 2233333321 2456789999995 554444432
Q ss_pred -------CCeEEEEeCCCC--eE--EE-EeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 331 -------DNTWCFYDLSSG--IC--LT-QVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 331 -------dg~i~iwd~~~~--~~--~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
...|.-|++..+ .. .. .+... ..........+.|.|||.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~-p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGL-PSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEE-CCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcC-CCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665432 11 11 11111 111123578999999998777654
No 383
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.30 E-value=0.00022 Score=49.24 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=40.2
Q ss_pred cccccCCCCCCceEe--CCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVS--KNSGLL-FEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
.|.|+.+-+.++++- | +||. |.+.++.++.+.+++||++.++++
T Consensus 9 ~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp BCTTTSSSBSCEEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCcccCCcCCCeEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 599999999999876 7 9998 999999999998899999998874
No 384
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.30 E-value=0.26 Score=52.61 Aligned_cols=285 Identities=10% Similarity=0.058 Sum_probs=153.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
.|.++....++..|..|+. +-+..||..+++...........|.++....+|.+.+ |+.+| +.+++..+.. +....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~-~~~~~ 267 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTP-LQHII 267 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSC-CEEEC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCc-EEEEE
Confidence 4888888877775555654 4588888876654322111234588888877777544 45444 7788876531 11111
Q ss_pred ecc-----cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC
Q 009763 305 TLK-----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (526)
Q Consensus 305 ~~~-----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 379 (526)
... -....|.++....+|.+.+ |+..| +.++.....-................|.++....+|.+-+. +.+|
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G 344 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG 344 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc
Confidence 000 1234588888877776544 55556 55544322111111110001112246888888877775544 4554
Q ss_pred cEEEEECCCCc--eeeEec-------CCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCccceEEecCC----CCCCee
Q 009763 380 LVKIWDVKSQA--NVAKFD-------GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD----SETPTN 446 (526)
Q Consensus 380 ~i~iwd~~~~~--~~~~~~-------~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~----~~~~i~ 446 (526)
+..++..++. ....+. .....|.++.-..+|.+-+ |+.+|+..||..+++......... ....|.
T Consensus 345 -l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 422 (758)
T 3ott_A 345 -LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTY 422 (758)
T ss_dssp -EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EETTEEEEEETTTTEEEEEEEECCC--CBSSSEE
T ss_pred -ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEE
Confidence 6667655432 121221 0124588888887776544 445679999987765432211110 124578
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEEeccc-Cc-ceee--eee---cCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 447 SVDFDHSGSYLAVASAD-IRVYQVASVK-AD-WNCI--KTF---PDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 447 ~i~~s~~~~~l~~~~~d-i~v~~~~~~~-~~-~~~~--~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
++..+.+|.+.+..... +.+++..... .. .... ..+ .+. ....|.++...++|.+.+.++..+-|..|+..
T Consensus 423 ~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~ 501 (758)
T 3ott_A 423 YIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL-SGMFINQIIPDNEGNVWVLLYNNKGIDKINPR 501 (758)
T ss_dssp EEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC-SCSCEEEEEECTTSCEEEEETTCSSEEEEETT
T ss_pred EEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc-ccceeeeEEEcCCCCEEEEccCCCCcEEEeCC
Confidence 88888887766544333 7777642100 00 0110 111 111 13458899999888866533334457777764
Q ss_pred C
Q 009763 519 G 519 (526)
Q Consensus 519 ~ 519 (526)
.
T Consensus 502 ~ 502 (758)
T 3ott_A 502 T 502 (758)
T ss_dssp T
T ss_pred C
Confidence 3
No 385
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.25 E-value=0.033 Score=53.40 Aligned_cols=241 Identities=13% Similarity=0.046 Sum_probs=113.2
Q ss_pred CCCEEEEEeC-CCcEEEEeCCC-CcEEEEecccc--cce-eEEEEecCCCEEEEEeC-C---------CcEEEEeCCCCC
Q 009763 234 SKDVIATGGV-DTNAVLFDRPS-GQIVTTLSGHS--KKV-TSVKFVTEGDLFLTGSA-D---------KTVRVWQGSEDG 298 (526)
Q Consensus 234 ~~~~l~t~~~-dg~v~vwd~~~-~~~~~~~~~h~--~~V-~~l~~~~~~~~l~s~s~-d---------g~i~iwd~~~~~ 298 (526)
++.+++.|+. ...+.+||..+ ...-..+..-. ... .+++. -++.+++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~- 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN- 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT-
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC-
Confidence 5677777765 34688899864 12222222111 111 12222 26777777765 2 46888998773
Q ss_pred ceeeeEecccCccceEEEEEecCCCEEEEEECC---------------------------------------CeEEEEeC
Q 009763 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---------------------------------------NTWCFYDL 339 (526)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---------------------------------------g~i~iwd~ 339 (526)
.+..+..+......-.++.. .++.+++.|+.+ ..+.+||+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 33333322201111112222 467777888764 57999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC------CCcEEEEEC--CCCce--eeEecCCCC--CeEEEEE
Q 009763 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------EALVKIWDV--KSQAN--VAKFDGHVG--AVTAISF 407 (526)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~--~~~~~--~~~~~~~~~--~i~~l~~ 407 (526)
.+......-... . ..... .+++. -++.+++.|+. ...+.+||+ .+.+- +..+..... .-..+.+
T Consensus 176 ~~~~W~~~~~~p-~-~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 251 (357)
T 2uvk_A 176 STQQWSYAGESP-W-YGTAG-AAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS 251 (357)
T ss_dssp TTTEEEEEEECS-S-CCCBS-CEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE
T ss_pred CCCcEEECCCCC-C-CCccc-ccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE
Confidence 988765543211 1 11111 22222 26677777764 345777887 43321 111211111 1112222
Q ss_pred CCCCCEEEEEeCC-----------------------cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC-
Q 009763 408 SENGYYLATAAHD-----------------------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD- 463 (526)
Q Consensus 408 s~~~~~l~~~~~d-----------------------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d- 463 (526)
++.+++.|+.+ .+.+||+.+.+-...-......... .+...++++++.|+.+
T Consensus 252 --~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 252 --NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYG--VSLPWNNSLLIIGGETA 327 (357)
T ss_dssp --TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSS--EEEEETTEEEEEEEECG
T ss_pred --CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccc--eeEEeCCEEEEEeeeCC
Confidence 56666666521 2778998865433322221111111 2233467788888754
Q ss_pred -----eEEEEEecccCcceeeeeecCC
Q 009763 464 -----IRVYQVASVKADWNCIKTFPDL 485 (526)
Q Consensus 464 -----i~v~~~~~~~~~~~~~~~~~~~ 485 (526)
-.+|.++...+.+.....+..|
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEEC-----
T ss_pred CCCEeeeEEEEEEcCcEeEeeeccccc
Confidence 2355444444555555554443
No 386
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.24 E-value=0.00016 Score=57.08 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=36.9
Q ss_pred cccccCCCCCCce------------------EeCCCCeeeeHHHHHHHHH-----hcCCCCCCCCCCCc
Q 009763 2 NCSISGEVPEEPV------------------VSKNSGLLFEKRLIERHIL-----DYGKCPVTGEPLTM 47 (526)
Q Consensus 2 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~ 47 (526)
.|+|+.+...+|+ +. .|||+|.+.+|.+|+. .+.+||++...+..
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4999988877664 44 5999999999999995 35689999987763
No 387
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.23 E-value=0.11 Score=51.86 Aligned_cols=263 Identities=12% Similarity=0.135 Sum_probs=145.5
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEeccc-------------------------cccee--EEEEe---cCCCEEEEEe-C
Q 009763 237 VIATGGVDTNAVLFDRPSGQIVTTLSGH-------------------------SKKVT--SVKFV---TEGDLFLTGS-A 285 (526)
Q Consensus 237 ~l~t~~~dg~v~vwd~~~~~~~~~~~~h-------------------------~~~V~--~l~~~---~~~~~l~s~s-~ 285 (526)
.+.+|+..|.|+||-+.+++.+..+.-. .+... .+.+. -||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4678889999999999999988876411 01111 23333 2567777766 3
Q ss_pred CCcEEEEeCCCCCceeeeEecc-cCccceEEEEEe--cCCCEEEEEEC-------CCeE------------EEEeCCCCe
Q 009763 286 DKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVH--ATNKYFVTASL-------DNTW------------CFYDLSSGI 343 (526)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~--p~~~~l~s~s~-------dg~i------------~iwd~~~~~ 343 (526)
+..|-..++... ++...+. .....+.++.|. |+..|++.++. ||.. ...|.++.+
T Consensus 152 n~RvAri~l~~~---~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~ 228 (638)
T 3sbq_A 152 NSRVARIRLDIM---KCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETME 228 (638)
T ss_dssp TTEEEEEETTTT---EEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCS
T ss_pred CcceEEEECCcE---eeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccE
Confidence 566777777664 3333322 345678888886 67788888775 2321 112333333
Q ss_pred EEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCC---------------cEEEEE-----------------------
Q 009763 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA---------------LVKIWD----------------------- 385 (526)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---------------~i~iwd----------------------- 385 (526)
...++... .....+...++|.+.++.+.+. .+.+++
T Consensus 229 v~~Qv~v~------gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 229 MAFQVIVD------GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp EEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred EEEEEEcC------CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 33332211 1222344456666666554321 234444
Q ss_pred --CCC----CceeeEecCCCCCeEEEEECCCCCEEEEEeCCc--EEEEEcCCCcc---------ceEE-ecCCCCCCeeE
Q 009763 386 --VKS----QANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKN---------FRSF-ESSDSETPTNS 447 (526)
Q Consensus 386 --~~~----~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~---------~~~~-~~~~~~~~i~~ 447 (526)
.+. +..+..+-.-......+.++|+|+++++++.-. +.++|+++... ...+ ...........
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 332 111111111223457789999999999988764 99999985321 0111 11112456789
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEEecc------cCcceeeeeecCCCCCcceEEE---EEcCCCCEEEEEeC
Q 009763 448 VDFDHSGSYLAVASAD--IRVYQVASV------KADWNCIKTFPDLSGTGKATCV---KFGPDAKYIAVGSM 508 (526)
Q Consensus 448 i~~s~~~~~l~~~~~d--i~v~~~~~~------~~~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~s~~~ 508 (526)
.+|+++|....+-.-| +.-|+++.. .+.+..+..+..|...+..... .-.+||++|++.+.
T Consensus 383 t~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 383 TTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 9999999433333344 888988642 2223455556554222211110 12568888888753
No 388
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.20 E-value=0.00015 Score=54.94 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=41.0
Q ss_pred CcccccCCCCCCceEe--CCCCeeeeHHHHHHHHHhc---C-----CCCC--CCCC--CCcCccccc
Q 009763 1 MNCSISGEVPEEPVVS--KNSGLLFEKRLIERHILDY---G-----KCPV--TGEP--LTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~-----~~p~--~~~~--~~~~~~~~~ 53 (526)
+.|+|+.+....|+.. ..|||.|++.+|.+|++.. | +||. +... ++.+++..+
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l 72 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM 72 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH
Confidence 4699999998888664 2499999999999999853 2 6999 8877 665554443
No 389
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.18 E-value=0.00017 Score=51.70 Aligned_cols=41 Identities=27% Similarity=0.279 Sum_probs=37.6
Q ss_pred CcccccCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 009763 1 MNCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLT 46 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~ 46 (526)
+.|+|+.+.+.+||+.| +||+ |++.+|.++ .+||++..+++
T Consensus 25 ~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCCEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCEEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 46999999999999997 9999 999999988 89999998876
No 390
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.18 E-value=0.064 Score=51.81 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=92.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeeeEecc-cCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-----------
Q 009763 276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI----------- 343 (526)
Q Consensus 276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~----------- 343 (526)
+|..++.+- ++.||.-++.....++.+..-. -.-..|..+..+|+|++|+..+. ..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 455555443 3667777766544444433221 01235788999999999988854 588888887332
Q ss_pred -EEEEeecCCC-CCCCCCeeEEEEcc---CCcEEEEEeCCCcEEEEECCCC--ceeeEec---------CCCCCeEEEEE
Q 009763 344 -CLTQVSDAGT-DGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQ--ANVAKFD---------GHVGAVTAISF 407 (526)
Q Consensus 344 -~~~~~~~~~~-~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~---------~~~~~i~~l~~ 407 (526)
....+..... .....+|..+.||| .+..|++-..|+.|++||+... ++. .++ .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 1122322111 11356899999999 4568999999999999999752 222 222 22357889999
Q ss_pred CCCCCEEEEEe--CCc-EEE
Q 009763 408 SENGYYLATAA--HDG-VKL 424 (526)
Q Consensus 408 s~~~~~l~~~~--~d~-i~i 424 (526)
..++-.|...+ .+| |+-
T Consensus 188 g~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEecCCCCCEEE
Confidence 99887777755 656 643
No 391
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.16 E-value=0.026 Score=54.53 Aligned_cols=151 Identities=16% Similarity=0.104 Sum_probs=98.6
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccc----ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCc-e------
Q 009763 232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH----SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-Y------ 300 (526)
Q Consensus 232 s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~------ 300 (526)
+.+|.-++++- ++.||.-++..+...+.++.. -..|..+..+|+|++|+..+. ..|.|-.+..+.. .
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34566555554 577887777644444444432 235888999999999988765 5799988873210 0
Q ss_pred --eeeEeccc------CccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeE-EEEeecC----CCCCCCCCeeEEE
Q 009763 301 --DCKHTLKD------HTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGIC-LTQVSDA----GTDGRPEGYTSAA 364 (526)
Q Consensus 301 --~~~~~~~~------h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~----~~~~~~~~v~~~~ 364 (526)
-..+.+.- ...+|..+.|||- +..|++-..|+.|++||+..... ...+... +.......+.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 01112221 2467999999994 56899999999999999986221 1122110 1223346789999
Q ss_pred EccCCcEEEEEe--CCCcEEEE
Q 009763 365 FHPDGLILGTGT--SEALVKIW 384 (526)
Q Consensus 365 ~~~~~~~l~~g~--~dg~i~iw 384 (526)
|..++-.|++.+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999988777755 77888654
No 392
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.14 E-value=0.07 Score=51.12 Aligned_cols=232 Identities=10% Similarity=0.075 Sum_probs=112.9
Q ss_pred CCCEEEEEeC-CCcEEEEeCCC-CCceeeeEecc-cCccceEEEEEecCCCEEEEEEC-C---------CeEEEEeCCCC
Q 009763 276 EGDLFLTGSA-DKTVRVWQGSE-DGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL-D---------NTWCFYDLSSG 342 (526)
Q Consensus 276 ~~~~l~s~s~-dg~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~-d---------g~i~iwd~~~~ 342 (526)
++.+++.|+. ...+.+||... ...+..+..+. .....-..+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5566666653 34688888864 23344443333 11111222222 5666666665 2 46889999988
Q ss_pred eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC---------------------------------------CcEEE
Q 009763 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---------------------------------------ALVKI 383 (526)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---------------------------------------g~i~i 383 (526)
......... . ....-.+++. .++.+++.|+.+ ..+.+
T Consensus 97 ~W~~~~~~~-p--~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 97 SWVKLMSHA-P--MGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp EEEECSCCC-S--SCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred cEEECCCCC-C--cccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 755432211 0 1111122222 578888888765 47899
Q ss_pred EECCCCcee--eEecCCCCCeEEEEECCCCCEEEEEeC-------CcEEEEEc--CCCccceEEecCCC-CCCeeEEEEc
Q 009763 384 WDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAH-------DGVKLWDL--RKLKNFRSFESSDS-ETPTNSVDFD 451 (526)
Q Consensus 384 wd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~-------d~i~iwd~--~~~~~~~~~~~~~~-~~~i~~i~~s 451 (526)
||+.+.+-. ..+......-.+++.. ++++++.|+. +.+.+||+ .+.+-. .+..... .......+..
T Consensus 173 yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~-~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN-KLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp EETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEE-ECCCSSTTTCCBSCEEEE
T ss_pred EeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEE-ecCCCCCCcccccceEEE
Confidence 999876432 2222111111223332 5666666542 12777887 332211 1111110 1111111223
Q ss_pred CCCCEEEEEeC------------------------CeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 452 HSGSYLAVASA------------------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 452 ~~~~~l~~~~~------------------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
.++.+++.|+. ++.+|+. ....|..+..+... .....++. .++++++.|+
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~--r~~~~~~~--~~~~i~v~GG 324 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLW--HNGKWDKSGELSQG--RAYGVSLP--WNNSLLIIGG 324 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEEC--C---CEEEEECSSC--CBSSEEEE--ETTEEEEEEE
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEec--CCCceeeCCCCCCC--cccceeEE--eCCEEEEEee
Confidence 35667777762 2445555 45678887765543 22223333 3778888888
Q ss_pred CCC------cEEEeeCCCCC
Q 009763 508 MDR------NLRVFGLPGND 521 (526)
Q Consensus 508 ~dg------~v~iw~l~~~~ 521 (526)
.++ .|.+++++.++
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCS
T ss_pred eCCCCCEeeeEEEEEEcCcE
Confidence 653 35556777654
No 393
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.08 E-value=0.11 Score=48.71 Aligned_cols=230 Identities=14% Similarity=0.143 Sum_probs=112.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEE-EecccccceeEEEEecCCCEEEEEeC----CC-------cEEEEeCCCCCceeee
Q 009763 236 DVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA----DK-------TVRVWQGSEDGNYDCK 303 (526)
Q Consensus 236 ~~l~t~~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~ 303 (526)
.+++.|+. .+..||..+++-.. .+..............++.+++.|+. ++ .+.+||..+. .+..+
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~ 93 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGL 93 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT-EEEEC
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC-cEEEC
Confidence 34555553 38889988765433 12111112222233447778888873 12 1677887663 33333
Q ss_pred EecccCccceEEEEEecCCCEEEEEECC-------CeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe
Q 009763 304 HTLKDHTAEVQAVTVHATNKYFVTASLD-------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (526)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 376 (526)
..+....... +++.. ++..++.|+.+ ..+.+||+.+.+....-... ..... .+++. .++.+++.|+
T Consensus 94 ~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~-~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 94 PPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP---IKVYG-HNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS---SCEES-CEEEE-ETTEEEEECC
T ss_pred CCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC---Ccccc-cEEEE-ECCEEEEEcC
Confidence 2222111111 22222 56777777754 35888999888765432211 10011 12222 4677878776
Q ss_pred C------CCcEEEEECCCCceeeE--ecCCCCCeEEEEECCCCCEEEEEeCC------cEEEEEcCCCccceEEecCCCC
Q 009763 377 S------EALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSE 442 (526)
Q Consensus 377 ~------dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~ 442 (526)
. -..+.+||+.+.+-... +.........+.+ ++++++.|+.+ .+.+||+.+.+-...-.... .
T Consensus 167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~ 243 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-E 243 (318)
T ss_dssp EESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-C
T ss_pred CCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-c
Confidence 4 24589999987643221 2111112223333 56676666542 27789987754322111111 1
Q ss_pred CCeeEEEEcCCCCEEEEEeCC--------------eEEEEEecccCcceee
Q 009763 443 TPTNSVDFDHSGSYLAVASAD--------------IRVYQVASVKADWNCI 479 (526)
Q Consensus 443 ~~i~~i~~s~~~~~l~~~~~d--------------i~v~~~~~~~~~~~~~ 479 (526)
..-.++.. .++.+++.|+.+ -.+|.++.....|..+
T Consensus 244 r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 244 RSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 11112222 256676766532 2345555555667666
No 394
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.97 E-value=0.27 Score=46.66 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=122.5
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEec----ccCccceEEEEEecC---CCEEEEE-E--CCCeE
Q 009763 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFVTA-S--LDNTW 334 (526)
Q Consensus 265 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~l~s~-s--~dg~i 334 (526)
-...+.++|.|+|.++++--..|.|++++...+. ...+..+ .........|+++|+ +..|... + .++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 4457899999999977766558999999765432 2223222 123456899999995 3444332 2 45567
Q ss_pred EEEeCCCC----------eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-------------CCcEEEEECCCCc-
Q 009763 335 CFYDLSSG----------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQA- 390 (526)
Q Consensus 335 ~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~~- 390 (526)
.-|.+..+ +.+..-... ........+.|.|||.++++.+. .|.|.-++....-
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~---~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK---GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC---CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC---CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 77766542 112111111 11224567999999987777542 3555555543210
Q ss_pred ------eeeEe-cCCCCCeEEEEECCCCCEEEEEeC-Cc-EEEEEcCCCcc------------------ceEEecCCCCC
Q 009763 391 ------NVAKF-DGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKN------------------FRSFESSDSET 443 (526)
Q Consensus 391 ------~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~------------------~~~~~~~~~~~ 443 (526)
....+ .++. ....++|+|+|.+.++-.. ++ -.|.-+..+.. +..+.. +..
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~--~~~ 263 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST--DEA 263 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--TTC
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--CCC
Confidence 01112 2333 4578999998876665432 22 22222233221 111111 012
Q ss_pred CeeEEEEcCCCCEEEEEeCCeEEEEEecccCc--ceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 444 PTNSVDFDHSGSYLAVASADIRVYQVASVKAD--WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 444 ~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
....++|. +|..+...-..-+||.+...... ......+.. ..+.+..++..|||.++++.+
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEc
Confidence 45567776 35554444333444444322111 111112222 246899999999998766643
No 395
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00042 Score=49.80 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=36.4
Q ss_pred cccccCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCCc
Q 009763 2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLTM 47 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (526)
.|+|+.+.+.+||+.| +||+ |++.+|.+ ..+||++..+++.
T Consensus 27 ~C~IC~~~~~~~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCBCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCEEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 5999999999999997 9999 99999964 4789999988764
No 396
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.93 E-value=0.29 Score=46.45 Aligned_cols=228 Identities=8% Similarity=0.072 Sum_probs=124.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE--EEEe----cccccceeEEEEecC---CCEEEEE---eCCCcEEEE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTL----SGHSKKVTSVKFVTE---GDLFLTG---SADKTVRVW 292 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~--~~~~----~~h~~~V~~l~~~~~---~~~l~s~---s~dg~i~iw 292 (526)
.-+.|+|.|+|.++++--..|.|++++...++. +..+ .........|+|+|+ +..|+.. ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 568999999999887766589999998765554 2222 123456889999985 3344432 234556656
Q ss_pred eCCCCC-------ceeee-Eecc-cCccceEEEEEecCCCEEEEEEC-------------CCeEEEEeCCCC--------
Q 009763 293 QGSEDG-------NYDCK-HTLK-DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSG-------- 342 (526)
Q Consensus 293 d~~~~~-------~~~~~-~~~~-~h~~~v~~l~~~p~~~~l~s~s~-------------dg~i~iwd~~~~-------- 342 (526)
...... ..+.+ ..+. .....-..|.|.|+|.++++.+. .|.|.-.+....
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 554411 11222 1221 11123457999999987777543 245555554322
Q ss_pred -eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-CCCcEEEEECCCCc------------------eeeEecCCCCCe
Q 009763 343 -ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA------------------NVAKFDGHVGAV 402 (526)
Q Consensus 343 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~------------------~~~~~~~~~~~i 402 (526)
..+... ++ .....++|+|+|.++++=. .++.-.|.-+..+. ++..+..+....
T Consensus 193 ~~~i~a~------G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 193 GSPVYSY------GH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp TCCEEEB------CC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCeEEee------CC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 011111 22 2356899999887666532 22222222222221 122222222356
Q ss_pred EEEEECCCCCEEEEEeCCc-EEEEEcCCCccc---eEEecCCCCCCeeEEEEcCCCCEEEEEe
Q 009763 403 TAISFSENGYYLATAAHDG-VKLWDLRKLKNF---RSFESSDSETPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 403 ~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~---~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 461 (526)
..++|. +|..++..-... |....+...... ..+. ......+..+...|+|.++++.+
T Consensus 266 ~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l-~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL-EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES-TTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEE-cCceeeccccCCEEEEEEecCCceecceEEee-cCCCCCccEEEECCCCcEEEEEc
Confidence 778886 455555554444 666666544321 1121 11245789999999997777654
No 397
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.85 E-value=0.00017 Score=56.42 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred cccccCCCCCC-----------------ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCc
Q 009763 2 NCSISGEVPEE-----------------PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM 47 (526)
Q Consensus 2 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (526)
.|+|+-+...+ +++.+.|||.|-+.+|.+|+..+.+||++..+...
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 48888877665 45556799999999999999999999999987654
No 398
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.82 E-value=0.06 Score=56.84 Aligned_cols=197 Identities=10% Similarity=0.052 Sum_probs=107.2
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCcEEEEe-c-----cccc-ceeEEEEec-CCCEEEEEeCCC------cEEEEeC
Q 009763 233 YSKDVIATGGVD----TNAVLFDRPSGQIVTTL-S-----GHSK-KVTSVKFVT-EGDLFLTGSADK------TVRVWQG 294 (526)
Q Consensus 233 ~~~~~l~t~~~d----g~v~vwd~~~~~~~~~~-~-----~h~~-~V~~l~~~~-~~~~l~s~s~dg------~i~iwd~ 294 (526)
.++.+++.||.+ ..+.+||..+++-...- . .... .-.+++..+ ++.+++.||.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467788888854 46888998776543322 1 0111 112333343 677778877543 5788888
Q ss_pred CCCCceeeeEecccCccceEEEEEecCCCEEEEEECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccC-CcE
Q 009763 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLI 371 (526)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 371 (526)
.+. .+..+..+...... .+++...++..++.|+.++ .+.+||..+......-.............++.+..+ +.+
T Consensus 476 ~t~-~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTR-EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTT-EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCC-cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 763 34333332211111 2233323788888887654 699999998875543321000011122334555554 778
Q ss_pred EEEEeCC-------CcEEEEECCCCce-----eeEec----CCCCCeEEEEECCCCCEEEEEeCC--------c-EEEEE
Q 009763 372 LGTGTSE-------ALVKIWDVKSQAN-----VAKFD----GHVGAVTAISFSENGYYLATAAHD--------G-VKLWD 426 (526)
Q Consensus 372 l~~g~~d-------g~i~iwd~~~~~~-----~~~~~----~~~~~i~~l~~s~~~~~l~~~~~d--------~-i~iwd 426 (526)
++.|+.+ +.+.+||+.+... -..+. ........+.+ .++.+++.|+.+ . +.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 8888762 4588999987761 11111 11112223333 336777777631 2 89999
Q ss_pred cCCCcc
Q 009763 427 LRKLKN 432 (526)
Q Consensus 427 ~~~~~~ 432 (526)
+.+.+-
T Consensus 633 ~~t~~W 638 (695)
T 2zwa_A 633 PLSETL 638 (695)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 987643
No 399
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.76 E-value=0.44 Score=46.13 Aligned_cols=259 Identities=8% Similarity=0.042 Sum_probs=152.5
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 323 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 323 (526)
+..|.|.|+.++..+..-. -.--+.-.+|..+.++.-. ..++.|||+++. ..+..+. ....|..-.|-.. +
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K---~klks~~-~~e~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHT-MTDDVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTT---EEEEEEE-CSSCCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHh---hhhccee-cCCCceEEEecCC-C
Confidence 4478888988754432211 1123455678777776655 678999999986 4444443 2356777777633 3
Q ss_pred EEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-------CCCcEEEEECCCCceeeEe
Q 009763 324 YFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------SEALVKIWDVKSQANVAKF 395 (526)
Q Consensus 324 ~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------~dg~i~iwd~~~~~~~~~~ 395 (526)
.|+.. .+..|+-|+++.. .....+..... -....|..-..+++.++++..+ -.|.+.+|.... +..+.+
T Consensus 118 ~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~-L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~i 194 (494)
T 1bpo_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSS-LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPI 194 (494)
T ss_dssp EEEEE-CSSEEEEEESSSSCCCEEEEECCGG-GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEE
T ss_pred eEEEE-cCCeeEEecccCCCCchhheecchh-cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchh
Confidence 44444 3568999999753 34444443221 2235677778888888777543 247788998864 345567
Q ss_pred cCCCCCeEEEEECCCC---CEEEEEeCC---c-EEEEEcCCC---c-cc--eEE--ecC--CCCCCeeEEEEcCCCCEEE
Q 009763 396 DGHVGAVTAISFSENG---YYLATAAHD---G-VKLWDLRKL---K-NF--RSF--ESS--DSETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~~---~~l~~~~~d---~-i~iwd~~~~---~-~~--~~~--~~~--~~~~~i~~i~~s~~~~~l~ 458 (526)
++|......+.+..+. ..++.+... + +.|.++... . .. +.. ... ....-..++..++....++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 7786655555543321 234444332 3 889988543 1 11 111 111 1123455788888887777
Q ss_pred EEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 459 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.-+.- +.+||+ .+..++..-... ...|...+-+....=++.....|.|.--.++..
T Consensus 275 viTK~G~i~lyDl----eTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 275 LITKYGYIHLYDL----ETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEecCceEEEEec----ccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 77766 788887 444555443332 445655555555455666667888776666543
No 400
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.67 E-value=0.002 Score=46.65 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=39.5
Q ss_pred cccccCCC--CCCceEeCCCC-----eeeeHHHHHHHHHhcC--CCCCCCCCCCcCc
Q 009763 2 NCSISGEV--PEEPVVSKNSG-----LLFEKRLIERHILDYG--KCPVTGEPLTMDD 49 (526)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~ 49 (526)
.|.|+.+- ..+|+|.| ++ |.|-+.+|++||..++ +||++..++..+.
T Consensus 17 ~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 58998765 36799987 74 9999999999999987 8999999987653
No 401
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.65 E-value=0.43 Score=44.41 Aligned_cols=259 Identities=8% Similarity=0.024 Sum_probs=150.3
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 323 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 323 (526)
+..|.+.|+.++.....-. -.--+.-.+|..+.++.-. ..++.|+|+++. ..+..+. ....|..-.|-. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp---i~AdsAIMnP~~~ViALra-g~~LQiFnletK---~klks~~-~~e~VvfWkWis-~~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHT-MTDDVTFWKWIS-LN 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTT---EEEEEEE-CSSCEEEEEECS-SS
T ss_pred CCEEEEEECCCCCCccccc---cccceeeeCCCccEEEEec-CCeEEEechHHh---hhhccee-cCCccEEEEecC-CC
Confidence 3478888988754432211 1122344588888777665 578999999986 4444443 345777777764 34
Q ss_pred EEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeC-------CCcEEEEECCCCceeeEe
Q 009763 324 YFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------EALVKIWDVKSQANVAKF 395 (526)
Q Consensus 324 ~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-------dg~i~iwd~~~~~~~~~~ 395 (526)
.|+..+ +..|+-|+++.. .....+..... -....|..-..+++.++++..+- .|.+.+|.... +..+.+
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~-L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~i 195 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSS-LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPI 195 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGG-GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEE
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchh-cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-ccccee
Confidence 444443 458999999754 34444443211 22356777788888887765432 36788998754 445567
Q ss_pred cCCCCCeEEEEECCC---CCEEEEEeC--C-c-EEEEEcCCC---cc-----ceEEecCC--CCCCeeEEEEcCCCCEEE
Q 009763 396 DGHVGAVTAISFSEN---GYYLATAAH--D-G-VKLWDLRKL---KN-----FRSFESSD--SETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~---~~~l~~~~~--d-~-i~iwd~~~~---~~-----~~~~~~~~--~~~~i~~i~~s~~~~~l~ 458 (526)
++|......+.+..+ ..+++.+.. . + +.|.++... .. ...+.... ...-..++..++....++
T Consensus 196 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviy 275 (365)
T 2xzh_A 196 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 275 (365)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEE
Confidence 777655444433222 123333332 2 3 888888543 11 11111111 133455778888877777
Q ss_pred EEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCCCC
Q 009763 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 459 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~~~ 520 (526)
.-+.- +++||+ .+..++..-... ...|...+-+....=++.....|.|.--.++..
T Consensus 276 viTK~G~ihlyDl----eTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 276 LITKYGYIHLYDL----ETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEeCCcEEEEEEc----ccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 77666 888887 445555443332 445655555444444555667887776666543
No 402
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.55 E-value=0.094 Score=45.81 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=86.0
Q ss_pred CeeEEEEccCCcEEEEEeCCCcEEEEECCCCcee------eEec-CCCCCeEEEEECCCCCEEEEEeCCcEEEEEcCCCc
Q 009763 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV------AKFD-GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK 431 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~------~~~~-~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~ 431 (526)
.+..++|+|+|.+.++ .+|.++-.+..+.... ..+- ..-.....+.|.|+|.+.++ +++.|.-++-.+..
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCC
Confidence 6779999999997777 6787777776542211 1110 01112478999999998888 44337666643221
Q ss_pred cce-----EEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEeccc---CcceeeeeecCCCCCcceEEEEEcCCCCEE
Q 009763 432 NFR-----SFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDAKYI 503 (526)
Q Consensus 432 ~~~-----~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 503 (526)
... .......-..+..+.|+|+|.+.++. +.++|...... ..|....+..+...-....-+.|.+++.+.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~ 196 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLF 196 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEE
Confidence 110 11000012357899999999999888 44455432211 122111122121123344557799998876
Q ss_pred EEEeCCCcEEEeeCCCC
Q 009763 504 AVGSMDRNLRVFGLPGN 520 (526)
Q Consensus 504 ~s~~~dg~v~iw~l~~~ 520 (526)
++. +|. +|.....
T Consensus 197 ~v~--~g~--~Y~~~~p 209 (236)
T 1tl2_A 197 GVQ--GGK--FYEDYPP 209 (236)
T ss_dssp EEE--TTE--EEEESCC
T ss_pred EEe--CCe--EEecCCc
Confidence 666 774 4554433
No 403
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.46 E-value=0.0018 Score=46.92 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=37.2
Q ss_pred CcccccCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCCc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLTM 47 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (526)
..|.|+.+.+.+||+.| +||. |++.++.++ .+||++..+++.
T Consensus 19 ~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCCEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CEeEEeCcccCcEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 36999999999999997 9999 999999876 499999988764
No 404
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.25 E-value=0.096 Score=45.75 Aligned_cols=144 Identities=8% Similarity=0.107 Sum_probs=83.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE------EEEe-c-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI------VTTL-S-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~------~~~~-~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 296 (526)
.+.+++|+|+|.+.++ .+|.+.-.+..+... -..+ . +-.. ..++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5679999999997777 678777666644211 1111 0 1112 478999999987776 569888787643
Q ss_pred CCc--eeee-Eec-ccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe------EEEEeecCCCCCCCCCeeEEEEc
Q 009763 297 DGN--YDCK-HTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI------CLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 297 ~~~--~~~~-~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
.+. +.-. ..+ ..-=..+..|.+.|+|.+.+.. |+.+.-+...++. ....+.. ..-.....+.|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~----~g~~~yr~l~f~ 190 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ----GGWDTFKFLFFS 190 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES----SSGGGEEEEEEC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceecc----CCcceEEEEEEC
Confidence 221 1000 011 1112467999999999987776 7775443332211 0011110 111234556788
Q ss_pred cCCcEEEEEeCCCcE
Q 009763 367 PDGLILGTGTSEALV 381 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i 381 (526)
+++.+.++. +|.+
T Consensus 191 ~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKF 203 (236)
T ss_dssp TTSCEEEEE--TTEE
T ss_pred CCCcEEEEe--CCeE
Confidence 888877776 5633
No 405
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.20 E-value=0.0071 Score=42.74 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=40.0
Q ss_pred cccccCCCCCCceEeCCCCeeeeHHHHHHHHHhc--CCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY--GKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~ 46 (526)
.|+|+-++...-...+.+|+.|=+.+|.+|++.. .+||.++.+..
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 5999999987767777899999999999999988 78999998776
No 406
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.20 E-value=0.26 Score=54.98 Aligned_cols=226 Identities=12% Similarity=0.153 Sum_probs=127.2
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccC
Q 009763 230 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 309 (526)
Q Consensus 230 ~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h 309 (526)
-.+|..+.||.-. ..++.|||+++...+..+.-. ..|.-=.|-.... |+..+ +..|.-|++.+.. .+...+..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s--~P~k~fdR~ 145 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVT-DNAVYHWSMEGES--QPVKMFDRH 145 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCe-eEEEc-CCeEEEeccCCCC--ccHHHHhcc
Confidence 3567677666654 678999999887777766543 4566667765444 33333 3579999996532 444444444
Q ss_pred ----ccceEEEEEecCCCEEEEEE-------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc--c-CCcEEEEE
Q 009763 310 ----TAEVQAVTVHATNKYFVTAS-------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH--P-DGLILGTG 375 (526)
Q Consensus 310 ----~~~v~~l~~~p~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~g 375 (526)
...|..-..+++.+.++..| -.|.+.+|..+.+.... + .+|......+.+. + ...+++.+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-i-----egha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-I-----EGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-h-----hHhHhhhheeccCCCCCCceEEEEE
Confidence 34666777788888766543 34788888877653211 1 1222222222211 1 11222222
Q ss_pred eC---CCcEEEEECCCC---cee------eEe-c--CCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecC
Q 009763 376 TS---EALVKIWDVKSQ---ANV------AKF-D--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 439 (526)
Q Consensus 376 ~~---dg~i~iwd~~~~---~~~------~~~-~--~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 439 (526)
.. .+.++|.++... .+. ..+ . .......++..++.-..+..-+..| |.+||+.++.++..-...
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 21 267888887543 111 111 1 1233455677777766777777888 999999999887665544
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCeEEEEE
Q 009763 440 DSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (526)
Q Consensus 440 ~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 469 (526)
..+|...+.+....-+++....+.|..+
T Consensus 300 --~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 300 --GETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred --CCceEEeccCCCCCceEEEcCCceEEEE
Confidence 3444444444333333333344444444
No 407
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0054 Score=57.55 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=48.6
Q ss_pred CcccccCCCCCCceEeCCCCee--eeHHHHHHHHHhcC--CCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLL--FEKRLIERHILDYG--KCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~ 53 (526)
+.|+||+..++.||=+..|.|+ |+...+..+.++.+ +||+|+..+..+||+-=
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID 306 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAIS 306 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEB
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEc
Confidence 5799999999999999999997 99999999998887 59999999999998754
No 408
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.15 E-value=0.42 Score=47.43 Aligned_cols=102 Identities=10% Similarity=0.126 Sum_probs=61.4
Q ss_pred CeeEEEEccCCcEEEEEeCCCcEEEEECCCCce--eeEecC------CCCCeEEEEECCC----CCEEEEEeC-------
Q 009763 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFDG------HVGAVTAISFSEN----GYYLATAAH------- 419 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~------~~~~i~~l~~s~~----~~~l~~~~~------- 419 (526)
....++|.|+|+++++-...+.|++++..++.. +..+.. ..+....|+|+|+ +.+.++.+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 567999999999777654445788887655543 222221 2456789999994 444444332
Q ss_pred -----Cc-EEEEEcCCCc-------cce-EEecCCCCCCeeEEEEcCCCCEEEEEe
Q 009763 420 -----DG-VKLWDLRKLK-------NFR-SFESSDSETPTNSVDFDHSGSYLAVAS 461 (526)
Q Consensus 420 -----d~-i~iwd~~~~~-------~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~ 461 (526)
.. |.-|++.... .+. .+.. ........+.|+|+|.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEEC
Confidence 12 6666654321 111 1211 1234678999999998777654
No 409
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.12 Score=48.74 Aligned_cols=116 Identities=6% Similarity=0.057 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCCceeeeEecccC-ccceEEEEEe--cCCCEEEEE--ECCCeEEEEeCCCCeEEEEeecCC
Q 009763 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TAEVQAVTVH--ATNKYFVTA--SLDNTWCFYDLSSGICLTQVSDAG 352 (526)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~--p~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~ 352 (526)
.+++.++.||.|.-+|..++ +....+... ..++....-. +.+..++.+ +.||.+..+|..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG---~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG---HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT---EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCC---cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 46888999999999998876 455554432 1222221100 112244444 589999999999886655443211
Q ss_pred CCCCCCCeeE---EEE-c----cCCcEEEEEeCCCcEEEEECCCCceeeEecC
Q 009763 353 TDGRPEGYTS---AAF-H----PDGLILGTGTSEALVKIWDVKSQANVAKFDG 397 (526)
Q Consensus 353 ~~~~~~~v~~---~~~-~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 397 (526)
. ....++.. ..+ . ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus 88 l-v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 L-VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp H-HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred c-eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1 01112221 000 0 1456789999999999999999999988864
No 410
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.75 E-value=0.0082 Score=41.87 Aligned_cols=45 Identities=9% Similarity=0.212 Sum_probs=38.1
Q ss_pred cccccCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
.|.|+.+.+.++|+.| +||. |.+.++.+ ..+||++..++.. .+.|
T Consensus 17 ~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~--~~~i 62 (68)
T 2ea5_A 17 DCVVCQNGTVNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE--SFAL 62 (68)
T ss_dssp CCSSSSSSCCCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC--EECC
T ss_pred CCCCcCcCCCCEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc--eEEe
Confidence 5999999999999998 9999 99999984 5899999986653 4444
No 411
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.63 E-value=0.014 Score=54.68 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=47.9
Q ss_pred CcccccCCCCCCceEeCCCCee--eeHHHHHHHHHhcC--CCCCCCCCCCcCcccc
Q 009763 1 MNCSISGEVPEEPVVSKNSGLL--FEKRLIERHILDYG--KCPVTGEPLTMDDIVP 52 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~ 52 (526)
+.|+||+..++.|+=+..|.|+ |+...+..+.++.+ +||+|+..+..+||+-
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 5799999999999999999998 99999999998887 5999999999999874
No 412
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.59 E-value=1.5 Score=40.77 Aligned_cols=200 Identities=8% Similarity=0.031 Sum_probs=108.0
Q ss_pred EEecCCCCEEEEEeCC--------------CcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEe--CCC--cEE
Q 009763 229 LDIHYSKDVIATGGVD--------------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS--ADK--TVR 290 (526)
Q Consensus 229 ~~~s~~~~~l~t~~~d--------------g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg--~i~ 290 (526)
--+++++++|+-.... ..|+..++..++...... . .+..|+++++.|+-.. .++ .|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D--PCIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S--CEEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C--CccEEEEeCCEEEEEeecCCCCceEE
Confidence 3467888887766543 356666776554332222 1 1236788888877665 334 455
Q ss_pred EEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCC
Q 009763 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (526)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 369 (526)
..++.... ...+..+.. ..++++++.|+..+. ...|...++..+.....+. ... ...++|++
T Consensus 133 ~~~~dGs~----~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--------~~~-~~~~~P~g 195 (302)
T 3s25_A 133 RIRIDGEE----KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--------CNC-YKPVVLDD 195 (302)
T ss_dssp EEETTSCC----CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--------SCE-EEEEEEET
T ss_pred EEECCCCC----eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--------CCc-cceeeecC
Confidence 55554421 222222322 346778888776665 6788888988776543332 112 23466888
Q ss_pred cEEEEEeCC--CcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC--c-EEEEEcCCCccceEEecCCCCCC
Q 009763 370 LILGTGTSE--ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETP 444 (526)
Q Consensus 370 ~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~~~~~~~~~~~~~~~~ 444 (526)
..|+-.... ..|..-++.... ...+.. ..+ ..|+|++.+|.-++.. . |..-++..... +.+... .
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~~----~ 265 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAKG----E 265 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEEES----C
T ss_pred CEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEeeCC----c
Confidence 777766543 356566665433 333332 233 3377788888765433 2 66666654332 333221 1
Q ss_pred eeEEEEcCCCCEEEEEeC
Q 009763 445 TNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 445 i~~i~~s~~~~~l~~~~~ 462 (526)
+. .+++.+.+|+....
T Consensus 266 ~~--~i~i~~d~Iy~td~ 281 (302)
T 3s25_A 266 FC--NINVTSQYVYFTDF 281 (302)
T ss_dssp EE--EEEECSSEEEEEET
T ss_pred cc--eEEEeCCEEEEEEC
Confidence 22 33445666665543
No 413
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.017 Score=54.70 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=104.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccc-ccceeEEEEe--c-CCCEEEEE-eCCCcEEEEeCCCCCceeeeEeccc-
Q 009763 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFV--T-EGDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKD- 308 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~--~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~- 308 (526)
+.++++++.||.|.-+|..+|+....+... ..++....-. + ++..++.. +.||.|..++..++. .+.......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccc
Confidence 357889999999999999999999988754 1222221100 1 22333333 589999999987642 111111111
Q ss_pred -CccceEE---EEE-e----cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCeeEEE---Ec--cCCcEE
Q 009763 309 -HTAEVQA---VTV-H----ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAA---FH--PDGLIL 372 (526)
Q Consensus 309 -h~~~v~~---l~~-~----p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~---~~--~~~~~l 372 (526)
...++.. ... . ..+..+++|+.+|.+...|+.+|+.+..+......++. ....|.. +. ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1122221 000 0 14567889999999999999999999988643221100 0001111 10 123567
Q ss_pred EEEeCCCcEEEEECCCCceeeEec-----CCCCC--e-EEEEECCCCCEEEEEeCCc-EEEEEcCCCccce
Q 009763 373 GTGTSEALVKIWDVKSQANVAKFD-----GHVGA--V-TAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 434 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~--i-~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~ 434 (526)
+.|..+..+.+.+ ++++ +..+. ..... + .+-.++.++.+++ ++.++ |.-+|..++....
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence 7777677777666 4443 22111 10000 0 0000112355544 56666 8889988877653
No 414
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.46 E-value=2.3 Score=42.16 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=62.7
Q ss_pred cceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCCceeeeEecc---------cCccceEEEEEecC----CCEEEEEEC-
Q 009763 266 KKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLK---------DHTAEVQAVTVHAT----NKYFVTASL- 330 (526)
Q Consensus 266 ~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~----~~~l~s~s~- 330 (526)
...+.|+|.|+|. .|+++...|.|++++.........+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 45556788999999754321111222211 11356789999996 344343332
Q ss_pred -C----------CeEEEEeCCC----------CeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCC
Q 009763 331 -D----------NTWCFYDLSS----------GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (526)
Q Consensus 331 -d----------g~i~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 378 (526)
+ ..|.-|.+.. .+.+..+... ... .....+.|.|||.++++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~--H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRK--HLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSS--SCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCc--ccCCcEeECCCCcEEEEeCCC
Confidence 1 1455566542 1233333211 112 346889999999877775543
No 415
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.14 E-value=1.4 Score=49.29 Aligned_cols=257 Identities=9% Similarity=0.034 Sum_probs=132.5
Q ss_pred CCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCC
Q 009763 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 323 (526)
Q Consensus 244 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 323 (526)
..+|.|.|+.++..+..-. -.--+.-.+|..+.++.-. ..++.|||+++. ..+..+. ....|..-.|-...
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k---~klks~~-~~e~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHT-MTDDVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHh---hhhcccc-cCCCceEEEecCCC-
Confidence 4478888988765432211 1122344577777666554 678999999875 3333333 33567777775333
Q ss_pred EEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCeeEEEEccCCcEEEEEe-------CCCcEEEEECCCCceeeEe
Q 009763 324 YFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------SEALVKIWDVKSQANVAKF 395 (526)
Q Consensus 324 ~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------~dg~i~iwd~~~~~~~~~~ 395 (526)
.|+.. .+..|.-|++..... ...+..... -....|..-..+++.++++..+ -.|.+.+|....+ ..+.+
T Consensus 118 ~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~-L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~i 194 (1630)
T 1xi4_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSS-LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPI 194 (1630)
T ss_pred eeEEE-cCCeEEEeccCCCCccHHHHhcchh-cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhh
Confidence 33333 246899999975332 222222111 1135677777788888777543 3478889987543 33455
Q ss_pred cCCCCCeEEEEECCC---CCEEEEEeC---Cc-EEEEEcCCC---ccce-----EEecCC--CCCCeeEEEEcCCCCEEE
Q 009763 396 DGHVGAVTAISFSEN---GYYLATAAH---DG-VKLWDLRKL---KNFR-----SFESSD--SETPTNSVDFDHSGSYLA 458 (526)
Q Consensus 396 ~~~~~~i~~l~~s~~---~~~l~~~~~---d~-i~iwd~~~~---~~~~-----~~~~~~--~~~~i~~i~~s~~~~~l~ 458 (526)
+||.+....+.+..+ ...++.+.. ++ +.|.++... .... .+.... ...-..++..++....++
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 666554444443211 223332222 23 888888543 1100 011110 122234566777666666
Q ss_pred EEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 459 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.-+.- +.+||+.+ ..++..-.. ....|...+-+....-++.....|.|.--.++
T Consensus 275 ~itk~G~~~~~d~~t----~~~i~~~ri--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 275 LITKYGYIHLYDLET----GTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred EEecCceEEEEeccc----chhhhhccc--cCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 55555 78888743 333322221 13334333333322223334456655544444
No 416
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.95 E-value=0.98 Score=47.53 Aligned_cols=198 Identities=10% Similarity=-0.010 Sum_probs=101.3
Q ss_pred cCCCEEEEEECC----CeEEEEeCCCCeEEEEe-ecC-CCCCCCCCeeEEEEcc-CCcEEEEEeCCC------cEEEEEC
Q 009763 320 ATNKYFVTASLD----NTWCFYDLSSGICLTQV-SDA-GTDGRPEGYTSAAFHP-DGLILGTGTSEA------LVKIWDV 386 (526)
Q Consensus 320 p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~-~~~~l~~g~~dg------~i~iwd~ 386 (526)
.++..++.||.+ ..+.+||..++.....- ... +.......-.+++..+ ++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356666666643 45888998887655433 100 0001111223344443 788888887543 5789998
Q ss_pred CCCceee--EecCCCCCeEEEEECCCCCEEEEEeCCc---EEEEEcCCCccceEEe---cCCCCCCeeEEEEcCC-CCEE
Q 009763 387 KSQANVA--KFDGHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFE---SSDSETPTNSVDFDHS-GSYL 457 (526)
Q Consensus 387 ~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~---~~~~~~~i~~i~~s~~-~~~l 457 (526)
.+.+-.. .+..... -.+++...++++++.|+.++ +.+||..+..-...-. ..........+.++.+ +.++
T Consensus 476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8754222 2211111 12333334777888777652 8999988754322111 0001122233555655 6677
Q ss_pred EEEeC-----C--eEEEEEecccCc------ceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCC--------CcEEEee
Q 009763 458 AVASA-----D--IRVYQVASVKAD------WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD--------RNLRVFG 516 (526)
Q Consensus 458 ~~~~~-----d--i~v~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~v~iw~ 516 (526)
+.|+. . -.+|.++..... |..+...... .......+.+ .++++++.||.+ ..|.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-QRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-CCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-CcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 77765 1 234444333444 5555442111 1112233333 337777778743 4588888
Q ss_pred CCCC
Q 009763 517 LPGN 520 (526)
Q Consensus 517 l~~~ 520 (526)
+..+
T Consensus 633 ~~t~ 636 (695)
T 2zwa_A 633 PLSE 636 (695)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8654
No 417
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.67 E-value=3.3 Score=39.87 Aligned_cols=273 Identities=10% Similarity=0.019 Sum_probs=128.8
Q ss_pred CCEEEEEeCCCcEEEEeCCC-CcEEEEe--cccccceeEEEEec--CCCEEEEEeCCC----cEEEEeCCCCCceeeeEe
Q 009763 235 KDVIATGGVDTNAVLFDRPS-GQIVTTL--SGHSKKVTSVKFVT--EGDLFLTGSADK----TVRVWQGSEDGNYDCKHT 305 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~-~~~~~~~--~~h~~~V~~l~~~~--~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~ 305 (526)
...|.+|+..| +.+++... +.....+ ......|.+|++.| .+.++ .++..| .|...+ ..+..+..+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCCceECCc
Confidence 34677777777 55555432 2222211 12235699999998 44444 444444 343332 22233333221
Q ss_pred ---ccc--------CccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecC--CC------------CCCCC
Q 009763 306 ---LKD--------HTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDA--GT------------DGRPE 358 (526)
Q Consensus 306 ---~~~--------h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~------------~~~~~ 358 (526)
+.. ....|.++++.|. ...+..++..+.|...+- .++.-..+... .. .....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 111 1125778899872 455666655666555432 22222222110 00 01123
Q ss_pred CeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecC--C-----------CCCeEEEEECCC-CCEEEEEeCCcEE
Q 009763 359 GYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDG--H-----------VGAVTAISFSEN-GYYLATAAHDGVK 423 (526)
Q Consensus 359 ~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~-----------~~~i~~l~~s~~-~~~l~~~~~d~i~ 423 (526)
.+.++.++| +...++++..++.|...+ ..++.-..+.. . ...+.++.+.|+ ...|.++...+|.
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~ 256 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIY 256 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEE
Confidence 578899988 344455554444444332 12222222210 0 124889999985 4567777766665
Q ss_pred EEEcCCCccceEEecCCCC---CCeeEEEEcCC-CCEEEEEe-------------CCeEEEEEecccCcceeeee-ecCC
Q 009763 424 LWDLRKLKNFRSFESSDSE---TPTNSVDFDHS-GSYLAVAS-------------ADIRVYQVASVKADWNCIKT-FPDL 485 (526)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~---~~i~~i~~s~~-~~~l~~~~-------------~di~v~~~~~~~~~~~~~~~-~~~~ 485 (526)
..+-. ++....+...... ..+..+.++|. ...|.++. ....||.-......|..+.. +...
T Consensus 257 ~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~ 335 (394)
T 3b7f_A 257 RMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTD 335 (394)
T ss_dssp EEETT-TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCS
T ss_pred EeCCC-CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCc
Confidence 55422 2222222110001 23567888763 33444442 11567765444456776542 1110
Q ss_pred CCC--cceEEEEEcCC-CCEEEEEeCCCcEE
Q 009763 486 SGT--GKATCVKFGPD-AKYIAVGSMDRNLR 513 (526)
Q Consensus 486 ~~~--~~v~~~~~s~~-~~~l~s~~~dg~v~ 513 (526)
..- .....++++|. ...|+.++.++.|.
T Consensus 336 ~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 336 QAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred cccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 000 01235788774 35566676666554
No 418
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=94.64 E-value=0.044 Score=40.03 Aligned_cols=53 Identities=34% Similarity=0.466 Sum_probs=46.0
Q ss_pred CcccccCCCCCCceEeCCCC-----eeeeHHHHHHHHHhcCCCCCCCCCCCcCccccc
Q 009763 1 MNCSISGEVPEEPVVSKNSG-----LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (526)
+.|+|+-++|++-|.-.-++ ..|++..+.+.+.+++.-|.|.||+|.+.+|.-
T Consensus 28 l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~~ 85 (102)
T 2kkx_A 28 IQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVKH 85 (102)
T ss_dssp GCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEECT
T ss_pred cCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEech
Confidence 46999999999988754443 479999999999999999999999999888765
No 419
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.29 E-value=3.3 Score=38.30 Aligned_cols=244 Identities=7% Similarity=0.043 Sum_probs=129.1
Q ss_pred CCCCEEEEEe--CCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCC--------------CcEEEEeCCC
Q 009763 233 YSKDVIATGG--VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD--------------KTVRVWQGSE 296 (526)
Q Consensus 233 ~~~~~l~t~~--~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------------g~i~iwd~~~ 296 (526)
.++.+|.... .++.|...+..... ...+... .+--++++|++|+-+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4677666654 24556666655333 3333321 123457888887766542 3566667665
Q ss_pred CCceeeeEecccCccceEEEEEecCCCEEEEEE----CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEE
Q 009763 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS----LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
.. ...+. . .. +..|+++++.|+-.. .+..|...++.... ...+... .+ ..+++++..|
T Consensus 98 ~~-~~~l~---~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~-------~~--~~~~~~g~~i 159 (302)
T 3s25_A 98 HG-STVLD---P--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNH-------YL--FTCNTSDRYF 159 (302)
T ss_dssp CC-CEEEE---C--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESS-------CC--CCSEEETTEE
T ss_pred Cc-ceEee---c--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCC-------Cc--eEeeEECCEE
Confidence 42 12221 1 11 236777888888776 34456666766443 3333311 11 3456777666
Q ss_pred EEEeC-CCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCC-c--EEEEEcCCCccceEEecCCCCCCeeEE
Q 009763 373 GTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G--VKLWDLRKLKNFRSFESSDSETPTNSV 448 (526)
Q Consensus 373 ~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~--i~iwd~~~~~~~~~~~~~~~~~~i~~i 448 (526)
+-.+. ...|...++..+.....+.+ ... ..+.|++.+|+-...+ + |..-++..... ..+. ...+ .
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt----~~~~--~ 228 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT----EANI--E 228 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS----CSCE--E
T ss_pred EEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe----CCCc--c
Confidence 65544 57888888876554433332 222 3356888887766543 2 66666654442 2222 1223 3
Q ss_pred EEcCCCCEEEEEeCC--eEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEeeCCC
Q 009763 449 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLRVFGLPG 519 (526)
Q Consensus 449 ~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~l~~ 519 (526)
.|+|++.+|+.+... -.|+.++........+.. +.+.. +++.+.+|+-.. ..+.|..-++++
T Consensus 229 ~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~-------~~~~~--i~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 229 HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAK-------GEFCN--INVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEE-------SCEEE--EEECSSEEEEEETTTCCEEEEESSS
T ss_pred eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeC-------Cccce--EEEeCCEEEEEECCCCeEEEEECCC
Confidence 478889998876432 667766543333232221 12333 344566666554 345555545443
No 420
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.78 E-value=5 Score=38.56 Aligned_cols=263 Identities=9% Similarity=0.061 Sum_probs=126.1
Q ss_pred CCeEEEEecC--CCCEEEEEeCCC----cEEEEeCCCCcEEEEecc--------------cccceeEEEEec-C-CCEEE
Q 009763 224 PGIVSLDIHY--SKDVIATGGVDT----NAVLFDRPSGQIVTTLSG--------------HSKKVTSVKFVT-E-GDLFL 281 (526)
Q Consensus 224 ~~I~~~~~s~--~~~~l~t~~~dg----~v~vwd~~~~~~~~~~~~--------------h~~~V~~l~~~~-~-~~~l~ 281 (526)
..|.+|.+.| .+.+++ ++..| .|...+ +.++.-..+.. +...|.++++.| + ...|.
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4699999998 444544 44444 343332 23333222211 112477888886 2 44566
Q ss_pred EEeCCCcEEEEeCCCCCceeeeEeccc----------------CccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeE
Q 009763 282 TGSADKTVRVWQGSEDGNYDCKHTLKD----------------HTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGIC 344 (526)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~~~~~~~~~----------------h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~ 344 (526)
.++..+.|...+ ..+..++.+..+.. ....+.+|.++|. ...++.+..++.|...+ ..++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 665555554443 22233333322111 1235788999883 34455554444444433 22332
Q ss_pred EEEeecCCCCCC--------CCCeeEEEEccC-CcEEEEEeCCCcEEEEECCCCceeeEecC--CC---CCeEEEEECC-
Q 009763 345 LTQVSDAGTDGR--------PEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDG--HV---GAVTAISFSE- 409 (526)
Q Consensus 345 ~~~~~~~~~~~~--------~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~---~~i~~l~~s~- 409 (526)
...+.......+ ...+.++.++|+ ...|+++...+ |...+- .++.-..+.. .. ..+.++.++|
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 222211000000 124789999985 45666666544 444432 2332222221 11 3456788876
Q ss_pred CCCEEEEEeC-----------Cc-EEEEEcCC-CccceEEecC-CCCC-----CeeEEEEcCCC-CEEEEEeCCeEEEEE
Q 009763 410 NGYYLATAAH-----------DG-VKLWDLRK-LKNFRSFESS-DSET-----PTNSVDFDHSG-SYLAVASADIRVYQV 469 (526)
Q Consensus 410 ~~~~l~~~~~-----------d~-i~iwd~~~-~~~~~~~~~~-~~~~-----~i~~i~~s~~~-~~l~~~~~di~v~~~ 469 (526)
+...|.++.. ++ ..+|.... ++....+... .... ....++++|.. ..|++++.+..||.-
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3333444321 22 45565544 3333333211 1000 12357888753 456667666667766
Q ss_pred ecccCcceeeeeecCCCCCcceEEEEEc
Q 009763 470 ASVKADWNCIKTFPDLSGTGKATCVKFG 497 (526)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s 497 (526)
......|..+..- ...+.++.|.
T Consensus 369 ~D~G~tW~~~~~~-----lp~~~~v~~~ 391 (394)
T 3b7f_A 369 ADEGEHWQCIASH-----LPHIYAVQSA 391 (394)
T ss_dssp SSTTSBCEEEECS-----CSCEEEEEEE
T ss_pred CCCCCCceEcccC-----CCCeeEEEEe
Confidence 5555667766531 2346676663
No 421
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.78 E-value=4.9 Score=38.41 Aligned_cols=192 Identities=11% Similarity=0.099 Sum_probs=108.6
Q ss_pred CCeEEEEecCCCCEEEE--EeC-------------CCcEEEEeCCCC--cEEEEecc------cccceeEEEEe---cC-
Q 009763 224 PGIVSLDIHYSKDVIAT--GGV-------------DTNAVLFDRPSG--QIVTTLSG------HSKKVTSVKFV---TE- 276 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t--~~~-------------dg~v~vwd~~~~--~~~~~~~~------h~~~V~~l~~~---~~- 276 (526)
-.|..+...+.+++-+. |-. --.|.+||+.++ +.++++.- ....+..+.+. ++
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 46788888877764332 211 125889999999 99887753 23457888887 22
Q ss_pred ---CCEEEEE-eCCCcEEEEeCCCCCceeeeEecc-----------cC----ccceEEEEEecC----CCEEEEEECCC-
Q 009763 277 ---GDLFLTG-SADKTVRVWQGSEDGNYDCKHTLK-----------DH----TAEVQAVTVHAT----NKYFVTASLDN- 332 (526)
Q Consensus 277 ---~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~-----------~h----~~~v~~l~~~p~----~~~l~s~s~dg- 332 (526)
+.+...+ +..+-|.|+|+.++..++...... +. ...|..|+++|+ ++.|.-....+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~ 246 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI 246 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence 2343333 346789999999875544432111 11 135778888886 56665555443
Q ss_pred eEEEEe---CCCC---eEEEEeecCCCCCCCCCeeEEEEc-cCCcEEEEEeCCCcEEEEECCC-C---ceeeEec--CCC
Q 009763 333 TWCFYD---LSSG---ICLTQVSDAGTDGRPEGYTSAAFH-PDGLILGTGTSEALVKIWDVKS-Q---ANVAKFD--GHV 399 (526)
Q Consensus 333 ~i~iwd---~~~~---~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~g~~dg~i~iwd~~~-~---~~~~~~~--~~~ 399 (526)
.+.-.. ++.. ..+..+.. .+....-..+++. .+|.++++--..+.|..|+..+ . .....+. ..-
T Consensus 247 ~ly~V~T~~L~~~~~~~~v~~~G~---kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l 323 (381)
T 3q6k_A 247 KVYSVNTKELKQKGGKLNPELLGN---RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRF 323 (381)
T ss_dssp EEEEEEHHHHSSTTCCCCCEEEEE---CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTC
T ss_pred cEEEEEHHHhhCcchhhceEEeee---cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCc
Confidence 222221 1111 11222211 1111233456675 5788888888889999999875 1 1222221 122
Q ss_pred CCeEEEEECCCCCEEEEEe
Q 009763 400 GAVTAISFSENGYYLATAA 418 (526)
Q Consensus 400 ~~i~~l~~s~~~~~l~~~~ 418 (526)
..+..+.+.++|++.+..+
T Consensus 324 ~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 324 VFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CSEEEEEECTTSCEEEEEC
T ss_pred cccCeEEECCCCeEEEEEC
Confidence 3567788877776555543
No 422
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.84 E-value=8.7 Score=38.55 Aligned_cols=190 Identities=9% Similarity=0.083 Sum_probs=108.9
Q ss_pred CCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEc--cCCcEEEEEeC-------CCcE---------
Q 009763 321 TNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH--PDGLILGTGTS-------EALV--------- 381 (526)
Q Consensus 321 ~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~g~~-------dg~i--------- 381 (526)
||++++.-. .+..|...++...++-..+... ....+..+.|. |+..++++++. ||..
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iP----n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y 216 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVP----NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY 216 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECT----TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCC----CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc
Confidence 567787776 4678999999998887766532 23567788886 67777777764 2221
Q ss_pred ---EEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeC--------------Cc--EEEEEcCC-------C-----
Q 009763 382 ---KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH--------------DG--VKLWDLRK-------L----- 430 (526)
Q Consensus 382 ---~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--------------d~--i~iwd~~~-------~----- 430 (526)
...|..+.+....+. -.+....+...++|.|.++.+. +. +.+|+... +
T Consensus 217 ~~f~~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~ 295 (638)
T 3sbq_A 217 TMYNAIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL 295 (638)
T ss_dssp EEEEEEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC
T ss_pred eEEEEEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE
Confidence 011222222211111 0122333445666777666542 11 56666421 1
Q ss_pred c--cceEEecCC-------------CCCCeeEEEEcCCCCEEEEEeCC---eEEEEEecccC---------cceeeeeec
Q 009763 431 K--NFRSFESSD-------------SETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKA---------DWNCIKTFP 483 (526)
Q Consensus 431 ~--~~~~~~~~~-------------~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~---------~~~~~~~~~ 483 (526)
. .+..+.... .......+.++|+|+|+++++.- +.|+++..... .-.......
T Consensus 296 ~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 296 GDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp TTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 0 122222211 02345678899999999998765 99999864211 001111221
Q ss_pred CCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 484 DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 484 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
. .-.....+|.++|....+.--|..|.-|++.
T Consensus 376 ~---GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 376 L---GLGPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp C---CSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred C---CCcccEEEECCCCceEeeeeecceEEEEecc
Confidence 1 3456789999999555555689999999985
No 423
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.79 E-value=8.2 Score=38.12 Aligned_cols=239 Identities=9% Similarity=0.052 Sum_probs=121.2
Q ss_pred CeEEEEecCCCC-EEEEEeCCCcEEEEeCCCC---cEEEEec---------ccccceeEEEEecC----CCEEEEEeC--
Q 009763 225 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG---QIVTTLS---------GHSKKVTSVKFVTE----GDLFLTGSA-- 285 (526)
Q Consensus 225 ~I~~~~~s~~~~-~l~t~~~dg~v~vwd~~~~---~~~~~~~---------~h~~~V~~l~~~~~----~~~l~s~s~-- 285 (526)
.-+.|+|.|++. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999986 4555567899999975422 1222221 11456789999986 444333322
Q ss_pred C----------CcEEEEeCCCC--C-----ceeeeEecc--cCccceEEEEEecCCCEEEEEECCC--------------
Q 009763 286 D----------KTVRVWQGSED--G-----NYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDN-------------- 332 (526)
Q Consensus 286 d----------g~i~iwd~~~~--~-----~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg-------------- 332 (526)
+ ..|.-|.+... . ..+.+..+. ........|.|.|+|.++++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 13444555431 1 112222222 1112357899999998877766543
Q ss_pred ---eEEEEeCCCCe---------------------EEEEeecCCCCCCCCCeeEEEEccC-----Cc-EEEEEeCCC---
Q 009763 333 ---TWCFYDLSSGI---------------------CLTQVSDAGTDGRPEGYTSAAFHPD-----GL-ILGTGTSEA--- 379 (526)
Q Consensus 333 ---~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~~v~~~~~~~~-----~~-~l~~g~~dg--- 379 (526)
.|.-.|..... .+... +| .....++|+|. |. .++.+...|
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~------G~-RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~ 247 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAH------GL-HDPGRCAVDRHPTDININLTILCSDSNGKNR 247 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEE------CC-SSCCBEEEESSCSSTTCSEEEEEECC-----
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEE------CC-CCcceEEECCCCCCcccceEEEecccCCCCC
Confidence 23333332210 00000 11 13457899996 33 344443212
Q ss_pred -cEEEEECCCC------ceeeEecCCC-CCeEEEEECCC-------CCEEEEEeCCcEEEEEcCCCccc---eEEe-c--
Q 009763 380 -LVKIWDVKSQ------ANVAKFDGHV-GAVTAISFSEN-------GYYLATAAHDGVKLWDLRKLKNF---RSFE-S-- 438 (526)
Q Consensus 380 -~i~iwd~~~~------~~~~~~~~~~-~~i~~l~~s~~-------~~~l~~~~~d~i~iwd~~~~~~~---~~~~-~-- 438 (526)
.-.|..+..+ .++..+..+. ..+..+.|... |.+|+..-...|....+...... ..+. .
T Consensus 248 ~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~ 327 (463)
T 2wg3_C 248 SSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTS 327 (463)
T ss_dssp -CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEET
T ss_pred CCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCc
Confidence 1233333322 2344444221 46788888542 34555443322655555433211 1110 0
Q ss_pred ----CCCCCCeeEEEEcCCCCEEEEEe-------CCeEEEEEe
Q 009763 439 ----SDSETPTNSVDFDHSGSYLAVAS-------ADIRVYQVA 470 (526)
Q Consensus 439 ----~~~~~~i~~i~~s~~~~~l~~~~-------~di~v~~~~ 470 (526)
......+..+.+.|+|.++++.. .+.+||.+.
T Consensus 328 ~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 328 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp TSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred ccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 11135689999999999888876 358999985
No 424
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.12 E-value=0.19 Score=37.16 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=37.1
Q ss_pred cccccCCCCCC-ceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCC
Q 009763 2 NCSISGEVPEE-PVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~ 46 (526)
||.+++.+... .-+-| ++|+|+..++..|-++ ..+||++.++..
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 79999988776 45556 9999999999999865 478999999887
No 425
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.03 E-value=13 Score=38.85 Aligned_cols=232 Identities=8% Similarity=0.034 Sum_probs=121.1
Q ss_pred EEE-ecCCCCEEEEEeC-----CCcEEEEeCCCCcEEE-Eeccccc--------ceeEEEEecCCCEEEEEe--------
Q 009763 228 SLD-IHYSKDVIATGGV-----DTNAVLFDRPSGQIVT-TLSGHSK--------KVTSVKFVTEGDLFLTGS-------- 284 (526)
Q Consensus 228 ~~~-~s~~~~~l~t~~~-----dg~v~vwd~~~~~~~~-~~~~h~~--------~V~~l~~~~~~~~l~s~s-------- 284 (526)
.+. ++|++++++.+-+ -..++++|+.+++.+. .+. ... ....++|..++.++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 444 7899987776532 2369999999987653 112 110 113458875444444321
Q ss_pred --CCCcEEEEeCCCCCceeeeEecccCccce-EEEEEecCCC-----EEEEEECC---CeEEEEeCCC--CeEEEEeecC
Q 009763 285 --ADKTVRVWQGSEDGNYDCKHTLKDHTAEV-QAVTVHATNK-----YFVTASLD---NTWCFYDLSS--GICLTQVSDA 351 (526)
Q Consensus 285 --~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~~p~~~-----~l~s~s~d---g~i~iwd~~~--~~~~~~~~~~ 351 (526)
....|+.|.+.+... .-...+.+....+ .....++++. .+++.+.+ ..+.+.|... +. ...+...
T Consensus 212 ~~~~~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TSSBCEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred CCCCCEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 124688888765421 1222233322232 2344455665 24444422 4466666553 33 2222211
Q ss_pred CCCCCCCCeeEEEEccCCcEEEEE----------eCCCcEEEEECCCCc-------eeeE-ecC-CCCCeEEEEECCCCC
Q 009763 352 GTDGRPEGYTSAAFHPDGLILGTG----------TSEALVKIWDVKSQA-------NVAK-FDG-HVGAVTAISFSENGY 412 (526)
Q Consensus 352 ~~~~~~~~v~~~~~~~~~~~l~~g----------~~dg~i~iwd~~~~~-------~~~~-~~~-~~~~i~~l~~s~~~~ 412 (526)
. . ..+..+.++.+++.. ...+.|...|+.++. .... +.. ....+..+.+..+ .
T Consensus 290 ---~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 361 (711)
T 4hvt_A 290 ---S---D-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-R 361 (711)
T ss_dssp ---T---T-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-C
T ss_pred ---C---c-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-E
Confidence 1 1 122344566655533 246789999987642 1222 322 3346778888865 5
Q ss_pred EEEEEeCCc---EEEEEcCCCc-cceE-EecCCCCCCeeEEEEcCCCCEEE-EEeCC---eEEEEEec
Q 009763 413 YLATAAHDG---VKLWDLRKLK-NFRS-FESSDSETPTNSVDFDHSGSYLA-VASAD---IRVYQVAS 471 (526)
Q Consensus 413 ~l~~~~~d~---i~iwd~~~~~-~~~~-~~~~~~~~~i~~i~~s~~~~~l~-~~~~d---i~v~~~~~ 471 (526)
++++...++ +.++|+.++. .... +.... ...+....+++++..++ +.++. ..+|.++.
T Consensus 362 l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 362 VFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 666666664 7888887664 2333 33321 24566666667765444 43333 66676654
No 426
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.02 E-value=0.19 Score=33.78 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=35.1
Q ss_pred cccccCCCCCCceEeCCCCe-----eeeHHHHHHHHHhc--CCCCCCCCCCC
Q 009763 2 NCSISGEVPEEPVVSKNSGL-----LFEKRLIERHILDY--GKCPVTGEPLT 46 (526)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~p~~~~~~~ 46 (526)
.|.|+.+-..+|.++| +.+ .|=+.+|.+||.+. .+||+++.+..
T Consensus 8 ~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 8 VCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp EETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred EeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 5888876677788998 433 89999999999985 47999998764
No 427
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=87.30 E-value=2.4 Score=26.92 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=32.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 009763 82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 136 (526)
Q Consensus 82 a~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 136 (526)
+++--.|.||.|++.++||... ..+...|...||++|+.+-+.+
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~-----------m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKK-----------MKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999998653 4556666777777777765543
No 428
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=86.38 E-value=0.51 Score=36.44 Aligned_cols=13 Identities=62% Similarity=1.017 Sum_probs=10.9
Q ss_pred cCCCCCCCCCCCc
Q 009763 35 YGKCPVTGEPLTM 47 (526)
Q Consensus 35 ~~~~p~~~~~~~~ 47 (526)
.+.||+||.+++.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999999884
No 429
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.03 E-value=18 Score=39.44 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=34.1
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 009763 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (526)
.+.++...++..++++.+.|+++++|++.+++++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467778888889999999999999999999999887653
No 430
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=85.86 E-value=39 Score=35.85 Aligned_cols=241 Identities=10% Similarity=0.080 Sum_probs=118.2
Q ss_pred ccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCCceeeeEeccc----CccceEEEEEecCC-CEEEEEECCC-----e
Q 009763 265 SKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD----HTAEVQAVTVHATN-KYFVTASLDN-----T 333 (526)
Q Consensus 265 ~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~-~~l~s~s~dg-----~ 333 (526)
.+.|.+|+++|. ...+++++..+.|...+ +.+..++.+..... ....|.+|+++|.. +.++.+..+. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999985 45667777777665554 23333443321111 12469999999843 4444444321 2
Q ss_pred EEEEeCCCCeEEEEeecCCCCC----CCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECCCCceeeEecC------CCCCe
Q 009763 334 WCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDG------HVGAV 402 (526)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------~~~~i 402 (526)
..+.....|+.-..+....... ....+..++++| +...++++...+.|. .....++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 2223344454444443210000 011356788888 445666666444332 12222322222211 12458
Q ss_pred EEEEECCC-CCEEEEEeCC-c-EEEEEcCCCccceEEecCCCC----------------CCeeEEEEcCCCCEEEEE---
Q 009763 403 TAISFSEN-GYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSE----------------TPTNSVDFDHSGSYLAVA--- 460 (526)
Q Consensus 403 ~~l~~s~~-~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~----------------~~i~~i~~s~~~~~l~~~--- 460 (526)
..+.++|. +..++++..+ + |. .....++.-..+...... ..+..+.++|....|+++
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~ 250 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY-VTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYAD 250 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE-EESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEES
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE-EEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEec
Confidence 88999884 4455555543 3 32 222323322222211000 112677888744444444
Q ss_pred ------eCCeEEEEEecccCcceeeeeecCCC----------CCcceEEEEEcCC-CCEEEEEeC
Q 009763 461 ------SADIRVYQVASVKADWNCIKTFPDLS----------GTGKATCVKFGPD-AKYIAVGSM 508 (526)
Q Consensus 461 ------~~di~v~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~-~~~l~s~~~ 508 (526)
+....||.-......|..+....... ....+..++++|. ...|+++..
T Consensus 251 ~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~ 315 (789)
T 1sqj_A 251 YPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITL 315 (789)
T ss_dssp SCSSSCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCCCCCCceEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEe
Confidence 23467777666666777665422210 0013468888874 345555554
No 431
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.80 E-value=3.5 Score=32.92 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 009763 73 LGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 136 (526)
Q Consensus 73 l~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 136 (526)
|-.++.+.+.+.-+.-.+.+.+..++.||..+--+.+.+.+-+..+.++-++.+..+.+++..+
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666777777777777777888888888888888888888888877654
No 432
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=84.96 E-value=4 Score=28.13 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 009763 82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 136 (526)
Q Consensus 82 a~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 136 (526)
++-.+|.+|+.++..+.++|.++...++.+..-+.++..--|-.-.+|.+++..+
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678899999999999999999999999998888888777766655565555543
No 433
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=84.87 E-value=0.77 Score=23.59 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=19.4
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 79 EWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 79 Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
|.||+-.||..|+|....++|..+
T Consensus 1 eidalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHH
Confidence 568888899999998888887654
No 434
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=84.83 E-value=3.2 Score=30.31 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred HhHhhHHHHHHhhhhhHHHHHHHHHHHHH-hhhhchhhhHHHHHHhhhHHHHHHHHHHh
Q 009763 75 MFQNEWDGLMLSNFALEQQLHTARQELSH-ALYQHDAACRVIARLKKERDEARSLLAQS 132 (526)
Q Consensus 75 ~~q~Ewda~~le~~~lr~~l~~~~~el~~-aly~~daa~rv~arl~kerd~~r~~l~~~ 132 (526)
..|.||+.|--+.-.|..++..+..+|+. .+|+.|.+ .++.+.++.+++...|..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~--~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHE--QTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999986 68988865 4566667777766666554
No 435
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.39 E-value=4.1 Score=28.68 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=44.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 009763 82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 136 (526)
Q Consensus 82 a~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 136 (526)
++-.+|..|+.++..+.++|.++...++.+..-+.++..--|-.-.+|.+++..+
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6678899999999999999999999999998888888777766555555555443
No 436
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.27 E-value=35 Score=32.46 Aligned_cols=172 Identities=10% Similarity=0.094 Sum_probs=97.6
Q ss_pred eEEEEeCCCC--eEEEEeecCCC-CCCCCCeeEEEEc---cC----CcEEEEEe-CCCcEEEEECCCCceeeEec-----
Q 009763 333 TWCFYDLSSG--ICLTQVSDAGT-DGRPEGYTSAAFH---PD----GLILGTGT-SEALVKIWDVKSQANVAKFD----- 396 (526)
Q Consensus 333 ~i~iwd~~~~--~~~~~~~~~~~-~~~~~~v~~~~~~---~~----~~~l~~g~-~dg~i~iwd~~~~~~~~~~~----- 396 (526)
.|.+||+.++ +.+..+..... ......+..+.+. |+ +.+++.+. ..+.|.++|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6788999998 88887764211 1123457788887 22 44555554 45789999999876544331
Q ss_pred ---------CC----CCCeEEEEECCC----CCEEEEEeCCcEEEEEcC-----CCc---cceEEecCCCCCCeeEEEEc
Q 009763 397 ---------GH----VGAVTAISFSEN----GYYLATAAHDGVKLWDLR-----KLK---NFRSFESSDSETPTNSVDFD 451 (526)
Q Consensus 397 ---------~~----~~~i~~l~~s~~----~~~l~~~~~d~i~iwd~~-----~~~---~~~~~~~~~~~~~i~~i~~s 451 (526)
+. ...|..++++|+ +++|.-....+-++|.+. +.. .+..+........-..++++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 10 247889999997 778877776665566543 222 22222221111234456776
Q ss_pred -CCCCEEEEEeCC--eEEEEEec-cc--CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEe
Q 009763 452 -HSGSYLAVASAD--IRVYQVAS-VK--ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 507 (526)
Q Consensus 452 -~~~~~l~~~~~d--i~v~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 507 (526)
.+|.++++--.. |..|+... .- .+...+..-. .-..+..+.+..+|.+.+..+
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT---TCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC---CccccCeEEECCCCeEEEEEC
Confidence 456555544444 77777532 11 1222222211 244678888888876555543
No 437
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=81.13 E-value=9.2 Score=28.25 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=55.7
Q ss_pred HHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 009763 74 GMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 137 (526)
Q Consensus 74 ~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 137 (526)
+.|-||=-+++.++-.|+..|+...+.+++.-..+..-+|-..++.+.-+.+...+..++..+.
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988888888889888888888888888888777654
No 438
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.18 E-value=65 Score=34.17 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=78.8
Q ss_pred CCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCcEEEEeccc-------ccceeEEEEecC-CCEEEEEeCCCc----E
Q 009763 223 KPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTE-GDLFLTGSADKT----V 289 (526)
Q Consensus 223 ~~~I~~~~~s~~-~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~-~~~l~s~s~dg~----i 289 (526)
...|.+|+++|. ...+++++..+.|...+ +.|+.-..+..+ ...|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999996 45666777777766554 335544444332 246999999984 344444443211 3
Q ss_pred EEEeC-CCCCceeeeEeccc------CccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCC-CCCCCCe
Q 009763 290 RVWQG-SEDGNYDCKHTLKD------HTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGT-DGRPEGY 360 (526)
Q Consensus 290 ~iwd~-~~~~~~~~~~~~~~------h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v 360 (526)
.||.. +.+..++.+..-.. ....+..++++|.. +.++.+...+.|. .....|+.-..+..... ......+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 34433 33334444432100 01135678888753 4555555343332 22233333333321100 0112457
Q ss_pred eEEEEcc-CCcEEEEEeCC
Q 009763 361 TSAAFHP-DGLILGTGTSE 378 (526)
Q Consensus 361 ~~~~~~~-~~~~l~~g~~d 378 (526)
..+.++| ++..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 8899998 45566666554
No 439
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=80.15 E-value=62 Score=33.96 Aligned_cols=239 Identities=12% Similarity=0.065 Sum_probs=114.4
Q ss_pred ceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCCceeeeEeccc----CccceEEEEEecC-CCEEEEEECC-------Ce
Q 009763 267 KVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKD----HTAEVQAVTVHAT-NKYFVTASLD-------NT 333 (526)
Q Consensus 267 ~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~~p~-~~~l~s~s~d-------g~ 333 (526)
.|..|+++|.. ..++++...+.|..++- .+..+..+....+ ....|.+|+++|. .+.++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999853 45666776666655542 2333443221111 1245899999983 3444444321 12
Q ss_pred EEEEe-CCCCeEEEEeecCCCC-C---CCCCeeEEEEcc-CCcEEEEEeCC-CcEEEEECCCCceeeEec---C------
Q 009763 334 WCFYD-LSSGICLTQVSDAGTD-G---RPEGYTSAAFHP-DGLILGTGTSE-ALVKIWDVKSQANVAKFD---G------ 397 (526)
Q Consensus 334 i~iwd-~~~~~~~~~~~~~~~~-~---~~~~v~~~~~~~-~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~---~------ 397 (526)
..||. ...|+.-..+...... . ....+..++++| +...++++... +.|. .....++.-..+. .
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~-~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLW-RSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEE-EESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEE-EeCCCCcceecccCCCCCccccc
Confidence 33443 3334333333211000 0 011246789998 45667776633 2221 2222222111111 1
Q ss_pred --------CCCCeEEEEECCCC-------CEEEEEeCCc-EEEEEcCC-CccceEEecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 398 --------HVGAVTAISFSENG-------YYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 398 --------~~~~i~~l~~s~~~-------~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
....+..+.++|.. ..+.++..++ -.||-... ++.-..+...........+.++|++.++++.
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~ 261 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYITY 261 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEEE
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEEe
Confidence 11347778888743 2455554432 22343332 3332222211111122456778877666654
Q ss_pred e---------CCeEEEEEecccCcceeeeeecCC--CCCcceEEEEEcCC-CCEEEEEe
Q 009763 461 S---------ADIRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPD-AKYIAVGS 507 (526)
Q Consensus 461 ~---------~di~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~s~~ 507 (526)
. ....||..+.....|..+...... ...-....++++|. ...|+.++
T Consensus 262 ~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~ 320 (737)
T 2cn3_A 262 GDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTS 320 (737)
T ss_dssp ESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEE
T ss_pred cCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEe
Confidence 3 237888877777778776553221 00111345788874 34555554
No 440
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=80.01 E-value=34 Score=30.91 Aligned_cols=217 Identities=15% Similarity=0.062 Sum_probs=104.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeE
Q 009763 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (526)
Q Consensus 225 ~I~~~~~s~~~~~l~t~~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (526)
.|..++.... ..++. . ||.|+.|-......+..-......|..++...+. .++. . ||.|..|-....+....-
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P- 97 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP- 97 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC-
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC-
Confidence 3555554432 22333 4 8888888654321111001122357777664332 2333 4 899999976554322111
Q ss_pred ecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEE
Q 009763 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (526)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 384 (526)
..-...|..++... .+.+.-. ||.|..|-.+....+-. .......|..++...+..++ -. ||.|+.|
T Consensus 98 --~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~-----~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~w 164 (282)
T 3qhy_B 98 --AEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTV-----PAEAQSGVTALDGGVYTALA--VK-NGGVIAW 164 (282)
T ss_dssp --GGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSC-----CGGGGSSEEEEEECSSEEEE--EE-TTEEEEE
T ss_pred --cccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCC-----CccCCCCeEEEEcccCEEEE--EE-CCEEEEe
Confidence 11124677777653 3444445 99999997654321110 00112346666554433222 23 7889999
Q ss_pred ECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCC
Q 009763 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (526)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 463 (526)
-......+..-......|..++...+ ..++. . ++ |..|-......+-.-.. ....|..++......++++ +
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al-~-~G~v~~wG~n~~gqlg~p~~--~~~~v~~i~~G~~h~~al~---~ 236 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL-K-DGKVIAWGDNRYKQTTVPTE--ALSGVSAIASGEWYSLALK---N 236 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGG--GGSSCCEEEECSSCEEEEE---T
T ss_pred cCCCCCCCCCceecCCCeEEEEecCC-EEEEE-E-CCeEEEEECCCCCCCCCCcc--cCCCceEEEcCCCEEEEEE---C
Confidence 76543222111111346777776433 33344 3 55 99997654322211000 1234666665443333333 5
Q ss_pred eEEEEE
Q 009763 464 IRVYQV 469 (526)
Q Consensus 464 i~v~~~ 469 (526)
.++|-+
T Consensus 237 g~v~~w 242 (282)
T 3qhy_B 237 GKVIAW 242 (282)
T ss_dssp TEEEEE
T ss_pred CEEEEe
Confidence 555555
No 441
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=77.42 E-value=0.25 Score=34.30 Aligned_cols=18 Identities=33% Similarity=0.944 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCcCccccc
Q 009763 36 GKCPVTGEPLTMDDIVPI 53 (526)
Q Consensus 36 ~~~p~~~~~~~~~~~~~~ 53 (526)
.+||+||++|.-++||+-
T Consensus 9 ~~~PlCG~~L~W~eLIeQ 26 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEE 26 (95)
T ss_dssp EECSSSCCEECHHHHHHH
T ss_pred ccCCcCCCccCHHHHHHH
Confidence 589999999999999886
No 442
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.54 E-value=7.1 Score=28.90 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=32.6
Q ss_pred HHHHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhch
Q 009763 72 MLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHD 109 (526)
Q Consensus 72 ll~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~d 109 (526)
-+..+..|.|.+-.|+-.||++.+.+.-+|-+..-+-|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd 50 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGD 50 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 67889999999999999999999999999998544444
No 443
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.11 E-value=53 Score=30.44 Aligned_cols=238 Identities=12% Similarity=0.119 Sum_probs=117.4
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCc-eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC---CC------CeE
Q 009763 275 TEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL---SS------GIC 344 (526)
Q Consensus 275 ~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~---~~------~~~ 344 (526)
|+...+++.+.+|.|+--.+..-.. ......+.. .+.+..+........++..+..|.++-+.. .. |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 4667788999999998765431000 000112232 234555555556677888888888766654 22 221
Q ss_pred EEEeecCCCCCCCCCeeEEEEcc---CCcEEEEEeCCCcEEEEECCC--------CceeeEecCCCCCeEEEEECCCCCE
Q 009763 345 LTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKS--------QANVAKFDGHVGAVTAISFSENGYY 413 (526)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~--------~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (526)
+..+- .. .....|..+...+ ++.+++..+.+|.++-..+.. +.....+... +.+..+........
T Consensus 82 i~~~i--~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 82 IANII--PI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNE 157 (323)
T ss_dssp GGGTS--CC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSE
T ss_pred hhhcc--CC-CCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCE
Confidence 11111 01 1223455543333 256788889999999988742 2222223322 45555555444556
Q ss_pred EEEEeCCc-EEEEEcCCCc-------cceEEecCCCCCCeeEEEEcCCCC-EEEEEeCC--eEEEEEeccc---Ccceee
Q 009763 414 LATAAHDG-VKLWDLRKLK-------NFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVK---ADWNCI 479 (526)
Q Consensus 414 l~~~~~d~-i~iwd~~~~~-------~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~---~~~~~~ 479 (526)
++..+.+| +..|...... -++.+.... ...+.++..-+.+. .+++.+.. ++...+.... ....-+
T Consensus 158 i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCE
Confidence 66667776 6666654321 222222222 34455554434444 56666666 4444443211 111111
Q ss_pred eeecCCC-CCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 480 KTFPDLS-GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 480 ~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
..+.... ....+..+....++..++..+..|.+.-+.+.
T Consensus 237 ~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 237 VILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp ECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 1121111 12245543332334556667778877666654
No 444
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=74.17 E-value=14 Score=30.71 Aligned_cols=48 Identities=25% Similarity=0.226 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhh
Q 009763 86 SNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 133 (526)
Q Consensus 86 e~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~ 133 (526)
+...||+++...++||...+.....-...|..+.+|..++|..+....
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999976555444344455555666655555544433
No 445
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=73.76 E-value=5.3 Score=21.03 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=18.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 78 NEWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 78 ~Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
.||+|+-...-.|+..|+.+.+.|.
T Consensus 1 ~ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 1 XEWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899988877788888877776654
No 446
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=72.35 E-value=56 Score=29.49 Aligned_cols=223 Identities=13% Similarity=0.042 Sum_probs=106.2
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE
Q 009763 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 346 (526)
Q Consensus 267 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~ 346 (526)
.|..++.... ..++. . ||.|..|-....+..... ......|..++.... ..++. . ||.+..|-.+..-.+-
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 5667765432 22333 5 899999976554322110 112235777766422 22333 4 8999999865432211
Q ss_pred EeecCCCCCCCCCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEecCCCCCeEEEEECCCCCEEEEEeCCcEEEEE
Q 009763 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD 426 (526)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd 426 (526)
.- ......|..++...+. .+.-. +|.|+.|-....-.+..-......|..++...+. .++. .++.|..|-
T Consensus 96 ~P-----~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~l-~~G~v~~wG 165 (282)
T 3qhy_B 96 VP-----AEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALAV-KNGGVIAWG 165 (282)
T ss_dssp CC-----GGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-ETTEEEEEE
T ss_pred CC-----cccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEEE-ECCEEEEec
Confidence 10 0112356666655443 33334 8999999765432211111123457777664332 2332 333388887
Q ss_pred cCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeCCeEEEEEecccCcceeeeeecCCCCCcceEEEEEcCCCCEEEEE
Q 009763 427 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG 506 (526)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 506 (526)
......+..-... ...|..++......+ +. .+.++|-+-.... ...-.... ....|..++..... .++..
T Consensus 166 ~n~~gqlg~p~~~--~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~-gqlg~p~~---~~~~v~~i~~G~~h-~~al~ 235 (282)
T 3qhy_B 166 DNYFGQTTVPAEA--QSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRY-KQTTVPTE---ALSGVSAIASGEWY-SLALK 235 (282)
T ss_dssp CCTTSTTSCCGGG--GSSEEEEEECSSEEE-EE--ETTEEEEEECCTT-STTCCCGG---GGSSCCEEEECSSC-EEEEE
T ss_pred CCCCCCCCCceec--CCCeEEEEecCCEEE-EE--ECCeEEEEECCCC-CCCCCCcc---cCCCceEEEcCCCE-EEEEE
Confidence 6543222110000 234666655433222 23 3545554422111 11100001 12356777765443 33333
Q ss_pred eCCCcEEEeeCCCC
Q 009763 507 SMDRNLRVFGLPGN 520 (526)
Q Consensus 507 ~~dg~v~iw~l~~~ 520 (526)
||.|..|-....
T Consensus 236 --~g~v~~wG~n~~ 247 (282)
T 3qhy_B 236 --NGKVIAWGSSRT 247 (282)
T ss_dssp --TTEEEEESTTCC
T ss_pred --CCEEEEecCCCC
Confidence 999999987654
No 447
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=71.56 E-value=8.1 Score=22.05 Aligned_cols=28 Identities=39% Similarity=0.474 Sum_probs=21.2
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHH
Q 009763 85 LSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEAR 126 (526)
Q Consensus 85 le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r 126 (526)
.||-.|.+.+++-..| ||+|.+|.++++
T Consensus 7 ~ENekLhk~ie~Kdee--------------Ia~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNE--------------IARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHhhHHHH
Confidence 5788888888876666 788888877654
No 448
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.77 E-value=63 Score=29.07 Aligned_cols=200 Identities=10% Similarity=0.008 Sum_probs=112.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEE---eCCCCcEEEEecccccceeEEEEec--CCCEEEEEeCCCcEEEEeCCC
Q 009763 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLF---DRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSE 296 (526)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~t~~~dg~v~vw---d~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~ 296 (526)
..+.+..+......+.|+.-+..|.++-- ++..+.....+. ....|..+.. + +..+++..+.+|.++-..+..
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Confidence 34567777666666677777778887654 333221111133 3455666644 4 467899999999999987644
Q ss_pred CC---ceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-------eEEEEeecCCCCCCCCCeeEEEEc
Q 009763 297 DG---NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-------ICLTQVSDAGTDGRPEGYTSAAFH 366 (526)
Q Consensus 297 ~~---~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~ 366 (526)
-. .-.....+. -.+.+..+........++..+..|.+..++...- .-+.-+. . .....+..+...
T Consensus 100 ~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~---L-~~~d~vv~~~~~ 174 (276)
T 3no0_A 100 FEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK---L-EKNDETSGLRIW 174 (276)
T ss_dssp TTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC---C-CTTCCEEEEEEE
T ss_pred hhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc---c-CCCCEEEEEEEe
Confidence 21 001111222 2345666655556678888999999888875321 1111111 1 112456666655
Q ss_pred cCCcEEEEEeCCCcEEEEECCC-------CceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEE--EEcCC
Q 009763 367 PDGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL--WDLRK 429 (526)
Q Consensus 367 ~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i--wd~~~ 429 (526)
+++..++..+..|.++...+.. ++-+..+ ...+.+..+....+...++..+.+| +.. ++...
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 6666788888999999887642 2223333 2234454443333334455555555 555 66543
No 449
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=68.88 E-value=11 Score=20.20 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=16.1
Q ss_pred HhHhhHHHHHHhhhhhHHHHHHHHHH
Q 009763 75 MFQNEWDGLMLSNFALEQQLHTARQE 100 (526)
Q Consensus 75 ~~q~Ewda~~le~~~lr~~l~~~~~e 100 (526)
.|..|-..---|||+|++++.++..|
T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34455555556777777777766544
No 450
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.85 E-value=12 Score=29.95 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 009763 92 QQLHTARQELSH 103 (526)
Q Consensus 92 ~~l~~~~~el~~ 103 (526)
+.++.++.|+..
T Consensus 96 K~~e~l~DEl~a 107 (152)
T 3a7p_A 96 KNTERLNAALIS 107 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 451
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.59 E-value=15 Score=21.47 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHH
Q 009763 71 GMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSL 128 (526)
Q Consensus 71 ~ll~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~ 128 (526)
+|...|.||-.++--|+-+|++.--.. ..+||-+.||-...|..
T Consensus 3 nlvaqlenevaslenenetlkkknlhk--------------kdliaylekeianlrkk 46 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHK--------------KDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccH--------------HHHHHHHHHHHHHHHHH
Confidence 577888999888888888887653322 22466676666655544
No 452
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.57 E-value=7 Score=25.17 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=19.1
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 78 NEWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 78 ~Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
.|.|++..|+-+||++++.+++++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888776543
No 453
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=67.82 E-value=13 Score=25.92 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=45.9
Q ss_pred HhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHH
Q 009763 75 MFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQ 131 (526)
Q Consensus 75 ~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~ 131 (526)
.|+.|=+...--...|+.+|.++++++..-+..+..-..|-.+|..|-..+|..|+.
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 58 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666666678889999999999988888888888888888888888887753
No 454
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=63.89 E-value=1.4e+02 Score=31.03 Aligned_cols=230 Identities=10% Similarity=0.067 Sum_probs=108.5
Q ss_pred EecCCCEEEEE-eCC----CcEEEEeCCCCCceeeeE-ecc-cCcc------ceEEEEEecCCCEEEEEE----------
Q 009763 273 FVTEGDLFLTG-SAD----KTVRVWQGSEDGNYDCKH-TLK-DHTA------EVQAVTVHATNKYFVTAS---------- 329 (526)
Q Consensus 273 ~~~~~~~l~s~-s~d----g~i~iwd~~~~~~~~~~~-~~~-~h~~------~v~~l~~~p~~~~l~s~s---------- 329 (526)
++|++++++.+ |.. ..++++|+.++. .+. .+. .-+. ....++|..++.++++..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~---~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKD---FVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTE---ECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCC---cCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCC
Confidence 78888875543 322 368999998862 221 111 0000 113447764444444321
Q ss_pred CCCeEEEEeCCCCe--EEEEeecCCCCCCCCCeeEEEEccCCc-----EEEEEe---CCCcEEEEECCC--CceeeEecC
Q 009763 330 LDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGL-----ILGTGT---SEALVKIWDVKS--QANVAKFDG 397 (526)
Q Consensus 330 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~g~---~dg~i~iwd~~~--~~~~~~~~~ 397 (526)
....|+.|.+.+.. -...+... . .........++++. .+++.+ ....+.+.|... ++ ...+..
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~---~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 288 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVP---K-EYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINM 288 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECC---T-TSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCS
T ss_pred CCCEEEEEECCCChHHCeEEeccC---C-CceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeec
Confidence 12568888877653 22223211 1 11233455566655 244333 224566666553 32 223322
Q ss_pred CCCCeEEEEECCCCCEEEEEe----------CCc-EEEEEcCCCc-------cceEEecCCCCCCeeEEEEcCCCCEEEE
Q 009763 398 HVGAVTAISFSENGYYLATAA----------HDG-VKLWDLRKLK-------NFRSFESSDSETPTNSVDFDHSGSYLAV 459 (526)
Q Consensus 398 ~~~~i~~l~~s~~~~~l~~~~----------~d~-i~iwd~~~~~-------~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 459 (526)
.... .+..+.++.+++... ..+ |...|+.++. ....+..+.....+..+.+..+ .++++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 122334555555321 233 8889987642 2333333333556788888866 45555
Q ss_pred EeCC----eEEEEEecccCcceee--eeecCCCCCcceEEEEEcCCCC-EEEEEeC---CCcEEEeeCC
Q 009763 460 ASAD----IRVYQVASVKADWNCI--KTFPDLSGTGKATCVKFGPDAK-YIAVGSM---DRNLRVFGLP 518 (526)
Q Consensus 460 ~~~d----i~v~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~---dg~v~iw~l~ 518 (526)
...+ +.++++.. ..|... ..+.. .+.+..+.+++++. ++++.+. -+.+..+++.
T Consensus 366 ~~~~~~~~l~~~~~~~--g~~~~~~~i~lp~---~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLEN--EQWTKPVVLKLPY---QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEET--TEECCCEEECCCS---TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCC--CceEEEeccCCCC---CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5544 44554422 222111 11221 24566666666655 4444332 2566666664
No 455
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=63.86 E-value=29 Score=23.99 Aligned_cols=54 Identities=24% Similarity=0.235 Sum_probs=38.4
Q ss_pred HHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 009763 74 GMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 136 (526)
Q Consensus 74 ~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 136 (526)
..|+.|...-.+-..+|+++|+.++.|-. -..||.-.+.-..||..|+.+....
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaN---------paeIA~~~~~L~qAraDL~~l~r~~ 78 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEAN---------PAEIANTSQQLRHARADLADLQRRF 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC---------HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45677776666666677777777776632 3457887788888888888887754
No 456
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=63.66 E-value=15 Score=27.74 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=39.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhh
Q 009763 86 SNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQ 135 (526)
Q Consensus 86 e~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~ 135 (526)
|.-.|-.+|+.++..|..+.-+-|+. +++++.+|.+.+..+++.+...
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~--~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAAD--KYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888877 8999999999999888887664
No 457
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=63.09 E-value=1e+02 Score=29.09 Aligned_cols=150 Identities=12% Similarity=0.048 Sum_probs=83.3
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCC------CCceeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC---CC---
Q 009763 274 VTEGDLFLTGSADKTVRVWQGSE------DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL---SS--- 341 (526)
Q Consensus 274 ~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~---~~--- 341 (526)
-|+..++++.+.+|.|+--.+.. ++.-.....++ ....+..+........++..+..|.++-+.. ..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999999754321 11001222333 3456666666656677888888888776653 22
Q ss_pred ---CeEEEEeecCCCCCCCCCeeEEEEcc---CCcEEEEEeCCCcEEEEECCCC-------ceeeEecCCCCCeEEEEEC
Q 009763 342 ---GICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQ-------ANVAKFDGHVGAVTAISFS 408 (526)
Q Consensus 342 ---~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~l~~s 408 (526)
|..+..+. .. .....|.++.... ++.+|+.++..|.++...+... .....+.. ...+..+...
T Consensus 83 ~a~G~~i~~ll--~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 83 NARGRPIINWI--PL-ESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp TSCCEEGGGSC--CC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEE
T ss_pred ccCCcCHhhcc--CC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEe
Confidence 22111110 01 1224555554432 4568889999999998876432 22223332 3445555444
Q ss_pred CCCCEEEEEeCCc-EEEEEcC
Q 009763 409 ENGYYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 409 ~~~~~l~~~~~d~-i~iwd~~ 428 (526)
.....++..+..| +..|+..
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGG
T ss_pred CCCceEEEEeCCCeEEEEEcc
Confidence 4455666666666 5556543
No 458
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=63.04 E-value=9 Score=27.79 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=33.8
Q ss_pred CCCCChhHHHHHhHhhHHHHHHhhhhhHHHHH--------HHHH---HHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHh
Q 009763 64 LTAASIPGMLGMFQNEWDGLMLSNFALEQQLH--------TARQ---ELSHALYQHDAACRVIARLKKERDEARSLLAQS 132 (526)
Q Consensus 64 ~~~~sip~ll~~~q~Ewda~~le~~~lr~~l~--------~~~~---el~~aly~~daa~rv~arl~kerd~~r~~l~~~ 132 (526)
++.+-+--||..+..|||++.-|....|-+-. +--+ ..-+++|+-+.+-+.+ ++.+.++++.|
T Consensus 7 ~~~~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~km------Kq~YEeEI~rL 80 (92)
T 3vp9_A 7 NTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKM------KDAYEEEIKHL 80 (92)
T ss_dssp ----------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 34467888999999999987777654442222 2222 2335677776664433 45555556666
Q ss_pred hhhcC
Q 009763 133 ERQIM 137 (526)
Q Consensus 133 ~~~~~ 137 (526)
+.++.
T Consensus 81 r~eLe 85 (92)
T 3vp9_A 81 KLGLE 85 (92)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55543
No 459
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=60.63 E-value=1.1e+02 Score=28.41 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=111.0
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEe---CCC------CcEEEEe-c-ccccceeEEEEec---CCCEEEEEeCCCcE
Q 009763 224 PGIVSLDIHYSKDVIATGGVDTNAVLFD---RPS------GQIVTTL-S-GHSKKVTSVKFVT---EGDLFLTGSADKTV 289 (526)
Q Consensus 224 ~~I~~~~~s~~~~~l~t~~~dg~v~vwd---~~~------~~~~~~~-~-~h~~~V~~l~~~~---~~~~l~s~s~dg~i 289 (526)
+.+..+......+.|+.-+..|.++-.. +.. |..+..+ . .....|.++...+ +..+++.++.+|.|
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 3455555555666666667778766543 332 2221111 1 1234465554433 47789999999999
Q ss_pred EEEeCCCCCc----eeeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeCC--CCeEE----EEeecCCCCCCCCC
Q 009763 290 RVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICL----TQVSDAGTDGRPEG 359 (526)
Q Consensus 290 ~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~--~~~~~----~~~~~~~~~~~~~~ 359 (526)
+-..+..-.. -.....+.. .+.+..+........++..+..|.+..+... .-... .-...... .....
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCE
Confidence 9887543110 011122333 3455555555566788888999999888776 21110 00000111 22345
Q ss_pred eeEEEEccCCcEEEEEeCCCcEEEEECCCC-------ceeeEe--cCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCC
Q 009763 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQ-------ANVAKF--DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 429 (526)
Q Consensus 360 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-------~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 429 (526)
|.++...+++..++..+..|.++...+... +-+..+ ....+.+..+....+...++..+.+| +.-++...
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 777766666678888889999988876322 222222 22133455444433444555555555 65666543
No 460
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.97 E-value=37 Score=24.85 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhhc
Q 009763 122 RDEARSLLAQSERQI 136 (526)
Q Consensus 122 rd~~r~~l~~~~~~~ 136 (526)
+.....+|..|+.++
T Consensus 49 ~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 49 ADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445554443
No 461
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=59.56 E-value=7 Score=25.63 Aligned_cols=33 Identities=9% Similarity=0.307 Sum_probs=23.9
Q ss_pred hhHHHHHhHhhHHHHHHhhhhhHHHHHHHHHHH
Q 009763 69 IPGMLGMFQNEWDGLMLSNFALEQQLHTARQEL 101 (526)
Q Consensus 69 ip~ll~~~q~Ewda~~le~~~lr~~l~~~~~el 101 (526)
+-..|..+.++|+++.-|+-.|+.++..+.++|
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556888888999999999999988888776653
No 462
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=56.57 E-value=30 Score=25.84 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=16.7
Q ss_pred hHHHHHHhhhHHHHHHHHHHhhhh
Q 009763 112 CRVIARLKKERDEARSLLAQSERQ 135 (526)
Q Consensus 112 ~rv~arl~kerd~~r~~l~~~~~~ 135 (526)
.-.+..+.||||.+=.-|..++.-
T Consensus 31 k~~ve~lEkERDFYF~KLRdIEiL 54 (106)
T 4e61_A 31 KGTVSTLEIEREFYFNKLRDIEIL 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667899999887666666553
No 463
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=56.31 E-value=1.1e+02 Score=27.15 Aligned_cols=144 Identities=8% Similarity=-0.013 Sum_probs=67.9
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeeEecCCCCCeEEE-EECCCCCEEEEEeCCcEE---EEEcCC----Cccce-EEecCC
Q 009763 371 ILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAI-SFSENGYYLATAAHDGVK---LWDLRK----LKNFR-SFESSD 440 (526)
Q Consensus 371 ~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l-~~s~~~~~l~~~~~d~i~---iwd~~~----~~~~~-~~~~~~ 440 (526)
.+++.+.+|.|+--...... ....++... .+..+ ..+....+++..+.+.++ ++++.. +..+. .+.. .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L-~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL-P 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC-C
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC-C
Confidence 34556677777665543311 111233232 33333 333344444444333333 345522 22111 1111 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC--eEEEEEecc---cCcceeeeeecCCCCCcceEEEEEc-CCCCEEEEEeCCCcEEE
Q 009763 441 SETPTNSVDFDHSGSYLAVASAD--IRVYQVASV---KADWNCIKTFPDLSGTGKATCVKFG-PDAKYIAVGSMDRNLRV 514 (526)
Q Consensus 441 ~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~v~i 514 (526)
....|..+....++.+|+.++.+ ++...+... .........+.. ...+..+... .++..|+..+.+|.+..
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~---~d~lv~~~~~~~~~~~i~l~T~~G~~lr 158 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAGRMLM 158 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT---TCCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC---CCEEEEEEEecCCCCEEEEEcCCCeEEE
Confidence 23456666443456777777777 444444221 112222222322 3455555554 34567888888999888
Q ss_pred eeCCC
Q 009763 515 FGLPG 519 (526)
Q Consensus 515 w~l~~ 519 (526)
|.+..
T Consensus 159 f~~~e 163 (256)
T 1zvt_A 159 FPVSD 163 (256)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 87653
No 464
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=54.25 E-value=39 Score=22.65 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=38.9
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 009763 85 LSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 137 (526)
Q Consensus 85 le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 137 (526)
-+.-+|++++..+++|+...=-|.+.| --|++.+.-|.+.++++++...+.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFA--KWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYA--KWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355678888999999988766677777 467888888888888887777654
No 465
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=54.22 E-value=1.4e+02 Score=27.67 Aligned_cols=191 Identities=14% Similarity=0.069 Sum_probs=101.1
Q ss_pred CCEEEEEeCCCcEEEEeCCC-------CcEEEEec-ccccceeEEEEecCCCEEEEEeCCCcEEEE---eCCCCC---ce
Q 009763 235 KDVIATGGVDTNAVLFDRPS-------GQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVW---QGSEDG---NY 300 (526)
Q Consensus 235 ~~~l~t~~~dg~v~vwd~~~-------~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw---d~~~~~---~~ 300 (526)
...+++.+.+|.|+--.+.+ ++-+..+. .....+..+......+.|+.-+..|.++-. ++.... .-
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34677778888888654321 11111111 123345555444555566666667766544 443321 01
Q ss_pred eeeE---ecccCccceEEEEEec---CCCEEEEEECCCeEEEEeCCCCeEEEE--eecCCCCCCCCCeeEEEEccCCcEE
Q 009763 301 DCKH---TLKDHTAEVQAVTVHA---TNKYFVTASLDNTWCFYDLSSGICLTQ--VSDAGTDGRPEGYTSAAFHPDGLIL 372 (526)
Q Consensus 301 ~~~~---~~~~h~~~v~~l~~~p---~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l 372 (526)
..+. .+. ....|..+...+ +..+++.++.+|.++...+........ ........ ...+..+........+
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 1111 122 234566554433 578999999999999988654221110 00000112 2345555554455567
Q ss_pred EEEeCCCcEEEEECC--CC---------ceeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcC
Q 009763 373 GTGTSEALVKIWDVK--SQ---------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (526)
Q Consensus 373 ~~g~~dg~i~iwd~~--~~---------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 428 (526)
+..+..|.+..+... .- .....+. ....|.++...+.+.+++..+..| ++.-.+.
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 777888998888766 21 1111222 234577766666666788888887 7776654
No 466
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.13 E-value=1.1e+02 Score=34.18 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEee
Q 009763 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS 349 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 349 (526)
.+.+++..++..++++.+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34555667788899999999999999999999988865
No 467
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.88 E-value=42 Score=34.12 Aligned_cols=60 Identities=18% Similarity=0.070 Sum_probs=42.4
Q ss_pred CeeEEEEccCCcEEEEEeCC------------CcEEEEECCCCceeeEecCC-CCCeEEEEECCCCCEEEEEe
Q 009763 359 GYTSAAFHPDGLILGTGTSE------------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAA 418 (526)
Q Consensus 359 ~v~~~~~~~~~~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~ 418 (526)
..--|+|+|.|.++++-..+ ..+.+.+..+++....+.+. ...++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 34668999999977765432 24566676677765555543 45899999999999888763
No 468
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.68 E-value=55 Score=25.90 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=32.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 009763 78 NEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 137 (526)
Q Consensus 78 ~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 137 (526)
+|+-.+.-+.-.|+++++...+|+.....+.-.+..-+..+.++-.++++.+..++..+.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444455555666777777777777776654
No 469
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.10 E-value=61 Score=33.68 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 009763 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (526)
.|.++.+ +..++++-+.|.++++||+.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555544 478999999999999999999998888764
No 470
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=51.28 E-value=28 Score=33.68 Aligned_cols=29 Identities=38% Similarity=0.447 Sum_probs=19.6
Q ss_pred HhHhhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009763 75 MFQNEWDGLMLSNFALEQQLHTARQELSHA 104 (526)
Q Consensus 75 ~~q~Ewda~~le~~~lr~~l~~~~~el~~a 104 (526)
..|+|||.- -+.-..|.+++++|+||..+
T Consensus 305 r~~qew~~~-hp~~~Aer~~e~a~ael~~a 333 (551)
T 2b5u_A 305 RRQQEWDAT-HPVEAAERNYERARAELNQA 333 (551)
T ss_dssp HHHHHHHHH-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhc-CcHHHHHHHHHHHHHHHHHH
Confidence 467888743 23335667788888888865
No 471
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=51.17 E-value=31 Score=24.93 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHh
Q 009763 81 DGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQS 132 (526)
Q Consensus 81 da~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~ 132 (526)
+.+--|+-.|..+++.+++|+ +++.+|+|..+..+..+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~--------------~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEV--------------SRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Confidence 344445556666666666664 46778888887776554
No 472
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.13 E-value=14 Score=24.70 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=17.3
Q ss_pred HHHhHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 73 LGMFQNEWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 73 l~~~q~Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
+..|+.+...|--||-.|+.++..+++++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666553
No 473
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.90 E-value=43 Score=29.83 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=37.9
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhh
Q 009763 78 NEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSER 134 (526)
Q Consensus 78 ~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~ 134 (526)
.|++|+..|.-.+++....+..++-..+.+.++....++.+..+.++.+..+...+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~ 146 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES 146 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777766666666666666555555554444
No 474
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.76 E-value=73 Score=32.13 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=44.3
Q ss_pred CCeeEEEEccCCcEEEEEeC------------CCcEEEEECCCCceeeEecCC-CCCeEEEEECCCCCEEEEEeC
Q 009763 358 EGYTSAAFHPDGLILGTGTS------------EALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAH 419 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~ 419 (526)
.....+.|.++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 45668999999988774332 125777777777765555433 356899999999999888743
No 475
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.40 E-value=72 Score=32.17 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCCEEEEEeCC-------------cEEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEEeC
Q 009763 400 GAVTAISFSENGYYLATAAHD-------------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (526)
Q Consensus 400 ~~i~~l~~s~~~~~l~~~~~d-------------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 462 (526)
.....|.|.++|.+.++.... .|..++..+++....+... ....++.++|+||++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEEe
Confidence 456789999999877743221 2666666666654444322 2467899999999999998753
No 476
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.77 E-value=61 Score=36.08 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=32.5
Q ss_pred CCeeEEEEccCCcEEEEEeCCCcEEEEECCCCceeeEec
Q 009763 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 396 (526)
Q Consensus 358 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 396 (526)
..+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566777788999999999999999999999887753
No 477
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=46.85 E-value=34 Score=24.81 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 009763 82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 137 (526)
Q Consensus 82 a~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 137 (526)
...-+.-+|++++.+++.|+...=-|.+.| --||+.+.-|.+.++++++...+.
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFA--KWaKL~Rk~DKl~~ele~l~~~l~ 73 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYA--KWTKNNRKLDSLDKEINNLKDEIQ 73 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788889999998988766677777 467777777888888877777654
No 478
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.67 E-value=33 Score=22.90 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHhHhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 009763 73 LGMFQNEWDGLMLSNFALEQQLHTARQELSH 103 (526)
Q Consensus 73 l~~~q~Ewda~~le~~~lr~~l~~~~~el~~ 103 (526)
...|+.+.+.+.-||-.|+.++..+++|+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888888888877553
No 479
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.39 E-value=23 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHhHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 73 LGMFQNEWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 73 l~~~q~Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
+..|+.+-+.+..|+..||.++..++.|+.
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777777764
No 480
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=44.12 E-value=29 Score=21.77 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=20.2
Q ss_pred hhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 009763 111 ACRVIARLKKERDEARSLLAQSERQIM 137 (526)
Q Consensus 111 a~rv~arl~kerd~~r~~l~~~~~~~~ 137 (526)
|...|-|+.||-++||..|+.+.....
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~kY 39 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQQY 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888899999988887654
No 481
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=43.76 E-value=24 Score=25.62 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCeeeeHHHHHHHHHhcCCCCCCCCCCCcC
Q 009763 19 SGLLFEKRLIERHILDYGKCPVTGEPLTMD 48 (526)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 48 (526)
+-|-.+++++.--|.....|||++++|-..
T Consensus 45 ~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 45 NNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 678999999999999999999999998754
No 482
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.64 E-value=82 Score=24.21 Aligned_cols=33 Identities=6% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHhHhhHHHHHHhhh----hhHHHHHHHHHHHHHhh
Q 009763 73 LGMFQNEWDGLMLSNF----ALEQQLHTARQELSHAL 105 (526)
Q Consensus 73 l~~~q~Ewda~~le~~----~lr~~l~~~~~el~~al 105 (526)
+..|+.|.+.+++|.- +|+.++.++..||.+.-
T Consensus 24 ie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 24 ISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666543 55666666666666543
No 483
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.70 E-value=78 Score=32.15 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=41.7
Q ss_pred CeEEEEECCCCCEEEEEeCC------------c-EEEEEcCCCccceEEecCCCCCCeeEEEEcCCCCEEEEE
Q 009763 401 AVTAISFSENGYYLATAAHD------------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (526)
Q Consensus 401 ~i~~l~~s~~~~~l~~~~~d------------~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 460 (526)
..-.|.|+|.|.+++.-..+ . +.+.+..+++..+.+... ....++.++|+|+++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 45779999999866664332 1 555566666655444443 46889999999999998876
No 484
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=42.57 E-value=6.9 Score=36.37 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=26.9
Q ss_pred cccccCCCCCC----c---eEeCCCCeeeeHHHHHHHHHhcC
Q 009763 2 NCSISGEVPEE----P---VVSKNSGLLFEKRLIERHILDYG 36 (526)
Q Consensus 2 ~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~ 36 (526)
-|+||-+...+ | .-.++|||.|-..||.+|++..+
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~ 351 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM 351 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHH
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCC
Confidence 49998665443 3 33568999999999999998753
No 485
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.50 E-value=85 Score=21.97 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=24.4
Q ss_pred CCCChhHHHHHhHhhHHH---HHHhhhhhHHHHHHHHHHHHH
Q 009763 65 TAASIPGMLGMFQNEWDG---LMLSNFALEQQLHTARQELSH 103 (526)
Q Consensus 65 ~~~sip~ll~~~q~Ewda---~~le~~~lr~~l~~~~~el~~ 103 (526)
+...+-.|.+.||.|.-| ++-|.-..|-.+..+..+|-.
T Consensus 8 ~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~e 49 (81)
T 1wt6_A 8 AEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLRE 49 (81)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777899999999864 444555555555555555443
No 486
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=42.08 E-value=2e+02 Score=26.14 Aligned_cols=238 Identities=12% Similarity=0.041 Sum_probs=115.9
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCce------eeeEecccCccceEEEEEecCCCEEEEEECCCeEEEEeC---CCC---
Q 009763 275 TEGDLFLTGSADKTVRVWQGSEDGNY------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL---SSG--- 342 (526)
Q Consensus 275 ~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~---~~~--- 342 (526)
|+...+++.+.+|.|+--.+..-... .....+.. .+.+..+........++..+..|.++-+.. ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 34567888999999987665431100 00011222 234444444445667777888888666553 222
Q ss_pred ---eEEEEeecCCCCCCCCCeeEEEEc---cCCcEEEEEeCCCcEEEEECCC-------CceeeEecCCCCCeEEEEECC
Q 009763 343 ---ICLTQVSDAGTDGRPEGYTSAAFH---PDGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVGAVTAISFSE 409 (526)
Q Consensus 343 ---~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~ 409 (526)
..+..+. .. .....|..+..- .++..++..+.+|.++-..+.. +.....+..+ +.+..+....
T Consensus 80 a~G~~i~~~l--~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 80 ARGRPIVNLL--PL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SCCEEGGGTS--CC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCeEhhhcc--CC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 1111110 01 122345555432 3456788889999999987642 1122223333 4555554444
Q ss_pred CCCEEEEEeCCc-EEEEEcCCCc-------cceEEecCCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEEeccc---Ccc
Q 009763 410 NGYYLATAAHDG-VKLWDLRKLK-------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK---ADW 476 (526)
Q Consensus 410 ~~~~l~~~~~d~-i~iwd~~~~~-------~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~---~~~ 476 (526)
+...++..+..| +..++..... -...+.... ...+..+....++..+++.+.. ++-..+.... ...
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~ 234 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE-GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 234 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC-CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC
Confidence 445566666666 6666653321 111122221 3456666554555667777666 4444432211 101
Q ss_pred eeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEEeeCC
Q 009763 477 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 518 (526)
Q Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~l~ 518 (526)
.-+..+......+.+..+....+...|+..+.+|.+.-+.+.
T Consensus 235 kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 235 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 111111111123455555443444556666777877666554
No 487
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.84 E-value=32 Score=24.18 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=17.6
Q ss_pred hHhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 009763 76 FQNEWDGLMLSNFALEQQLHTARQELSH 103 (526)
Q Consensus 76 ~q~Ewda~~le~~~lr~~l~~~~~el~~ 103 (526)
++.+...|.-||..|+.++.++++|+..
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777777777777766553
No 488
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.27 E-value=91 Score=21.95 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHh
Q 009763 86 SNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQS 132 (526)
Q Consensus 86 e~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~ 132 (526)
|.-+||.+..++.++...+--.+++-.+-+.+|..|+..-+.++..+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666555555555555556666677778888887766666554
No 489
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=40.79 E-value=7.7 Score=25.18 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=12.6
Q ss_pred HhHhhHHHHHHhhhhhHHHHHHHHHHH
Q 009763 75 MFQNEWDGLMLSNFALEQQLHTARQEL 101 (526)
Q Consensus 75 ~~q~Ewda~~le~~~lr~~l~~~~~el 101 (526)
.-||||+-- .|+++|.++.+||
T Consensus 8 laqnewelq-----alekelaqlekel 29 (80)
T 2lq4_p 8 LAQNEWELQ-----ALEKELAQLEKEL 29 (80)
T ss_dssp HSSSSTTTH-----HHHTTHHHHHHHH
T ss_pred HHHhHHHHH-----HHHHHHHHHHHHH
Confidence 357888533 3445566665554
No 490
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=40.61 E-value=33 Score=24.68 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=13.4
Q ss_pred HhhHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 77 QNEWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 77 q~Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
+.+...|.-||..|+.+++++++|+.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555543
No 491
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.55 E-value=1.6e+02 Score=28.60 Aligned_cols=88 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred ChhHHHHHhHhhHHHHHHhhh-h---------hHHHHHHHHHHHHHhhhhchhh----hHHHHHHhhhHHHHHHHHHHhh
Q 009763 68 SIPGMLGMFQNEWDGLMLSNF-A---------LEQQLHTARQELSHALYQHDAA----CRVIARLKKERDEARSLLAQSE 133 (526)
Q Consensus 68 sip~ll~~~q~Ewda~~le~~-~---------lr~~l~~~~~el~~aly~~daa----~rv~arl~kerd~~r~~l~~~~ 133 (526)
+.-.-|..++.+++.++-++- + |+|+|..+++.+.++-.|.-.+ +-+.+.|.++..+....+.+++
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELE 449 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCccccccccccccccCCCCCCCCCccCcCccccCCCCCHHHHHhhHHHHHHHHHhhc
Q 009763 134 RQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELTDCNAALSQQRK 193 (526)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~rk 193 (526)
.++. .+..++.+.++++...|+
T Consensus 450 ~~~~--------------------------------------~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 450 GEIT--------------------------------------TLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHH--------------------------------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHH--------------------------------------HHHHHHHHHHHHHHHhcC
No 492
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=40.40 E-value=32 Score=29.87 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=21.5
Q ss_pred HHHHHhHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 71 GMLGMFQNEWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 71 ~ll~~~q~Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
.+...++..+.++--+.+.|+++|++++.|..
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~ 195 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRD 195 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677766677777777777776643
No 493
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=40.21 E-value=27 Score=25.74 Aligned_cols=30 Identities=7% Similarity=0.237 Sum_probs=25.0
Q ss_pred CcccccCCC-CCCceEe-CCCCeeeeHHHHHH
Q 009763 1 MNCSISGEV-PEEPVVS-KNSGLLFEKRLIER 30 (526)
Q Consensus 1 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 30 (526)
+.|.|+.+. +.+||.+ ..+|+.|++.+++.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 469999864 7788874 56999999999998
No 494
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=40.11 E-value=20 Score=24.09 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=9.2
Q ss_pred hhHHHHHHhhhhhHHHH
Q 009763 78 NEWDGLMLSNFALEQQL 94 (526)
Q Consensus 78 ~Ewda~~le~~~lr~~l 94 (526)
|+||.+.+||=+-=..|
T Consensus 1 n~WD~~LveNgekI~~L 17 (64)
T 3t97_C 1 NAWDRTLIENGEKITSL 17 (64)
T ss_dssp --CTTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 68998777765433333
No 495
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=39.69 E-value=2.1e+02 Score=25.59 Aligned_cols=196 Identities=12% Similarity=0.076 Sum_probs=99.7
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEE---eCCCCeEEEEeecCCCCCCCCCeeEEEEcc-CCcEEEEEeCCCcEEEEECC
Q 009763 312 EVQAVTVHATNKYFVTASLDNTWCFY---DLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK 387 (526)
Q Consensus 312 ~v~~l~~~p~~~~l~s~s~dg~i~iw---d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~ 387 (526)
.+..+.......+++.-+.+|.++.- ++..+.... + . .....|..+.... +...++..+.+|.++-..+.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l----l-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L----K-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C----S-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c----C-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence 44444444445556666666765543 332221111 1 1 1124565554422 46788899999999998865
Q ss_pred CCc------eeeEecCCCCCeEEEEECCCCCEEEEEeCCc-EEEEEcCCC-------ccceEEecCCCCCCeeEEEEcCC
Q 009763 388 SQA------NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-------KNFRSFESSDSETPTNSVDFDHS 453 (526)
Q Consensus 388 ~~~------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-------~~~~~~~~~~~~~~i~~i~~s~~ 453 (526)
... ....++. ...+..+....+...++..+..| +..+..... +-...+.... ...+..+...++
T Consensus 99 ~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~ 176 (276)
T 3no0_A 99 EFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNG 176 (276)
T ss_dssp GTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESS
T ss_pred HhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCC
Confidence 432 2222332 34555555555555677777777 666654321 1112222222 345655555555
Q ss_pred CCEEEEEeCC--eEEEEEeccc---CcceeeeeecCCCCCcceEEEEEcCCCCEEEEEeCCCcEEE--eeCC
Q 009763 454 GSYLAVASAD--IRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV--FGLP 518 (526)
Q Consensus 454 ~~~l~~~~~d--i~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i--w~l~ 518 (526)
+.+++..+.. ++...+.... ....-+..+ . ..+.+..+....+...++..+.+|.+.. +++.
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~--~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-G--TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-C--SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-c--CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 6677777777 4444432211 111112222 1 2345555544334446667777888777 7654
No 496
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=39.53 E-value=86 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=12.7
Q ss_pred HhHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 009763 75 MFQNEWDGLMLSNFALEQQLHTARQELS 102 (526)
Q Consensus 75 ~~q~Ewda~~le~~~lr~~l~~~~~el~ 102 (526)
.++.+|+.+.-+.-.|..++..++.++.
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 37 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAEDRSK 37 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444444444444443333
No 497
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.12 E-value=19 Score=21.52 Aligned_cols=9 Identities=33% Similarity=0.313 Sum_probs=5.1
Q ss_pred hhhhhHHHH
Q 009763 86 SNFALEQQL 94 (526)
Q Consensus 86 e~~~lr~~l 94 (526)
||+.|||-+
T Consensus 32 EN~mLRqvl 40 (42)
T 2oqq_A 32 ENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 466666544
No 498
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=38.98 E-value=1.2e+02 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred HhhHHHHHHhhhhhHHHHHHHHHH
Q 009763 77 QNEWDGLMLSNFALEQQLHTARQE 100 (526)
Q Consensus 77 q~Ewda~~le~~~lr~~l~~~~~e 100 (526)
.++|+.+..+.-+|+++|..++.+
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~ 28 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKD 28 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999887743
No 499
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=38.92 E-value=91 Score=23.83 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=33.2
Q ss_pred CCCChhHHHHHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhh
Q 009763 65 TAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSER 134 (526)
Q Consensus 65 ~~~sip~ll~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~ 134 (526)
.++||-+-|..|.+|++.|+-+-- +.+.+. --..++|.+..|.....+......+++++.
T Consensus 3 ~a~~i~~~l~~Leae~q~L~~~E~---qry~~e-------ka~AE~A~~~La~~~~l~~~i~er~~~i~~ 62 (119)
T 3etw_A 3 DAASLVGELQALDAEYQNLANQEE---ARFNEE-------RAQADAARQALAQNEQVYNELSQRAQRLQA 62 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776643211 011111 112345666667776667777677766665
No 500
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.62 E-value=1e+02 Score=21.67 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=46.2
Q ss_pred hHHHHHhHhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhchhhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 009763 70 PGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 136 (526)
Q Consensus 70 p~ll~~~q~Ewda~~le~~~lr~~l~~~~~el~~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 136 (526)
.-=+..+++|-|..+-..-++..++....+....+--...+-.|-+.-+..+.|.+...|...+..+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888887777777777777777777666555555666667777777777777776665544
Done!