BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009765
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/571 (29%), Positives = 275/571 (48%), Gaps = 74/571 (12%)
Query: 4 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLS 62
D L+ +E+ T+NA Q L IL R YL+ + L G T+K +P+
Sbjct: 19 DAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTV---RETFKSKIPVI 75
Query: 63 CYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQ 122
Y+D I ++A GD +L+ P+ F SSGTS+ + KL+P L +
Sbjct: 76 KYEDLQPEIQRIANGDRSA----ILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQML 131
Query: 123 IAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAG---------------FK----- 162
++ V L+ P D K L+F++ ++T T G FK
Sbjct: 132 YSLLMPVM---NLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYD 188
Query: 163 -----------VMAASAFP-----------------------LQGLIGAFSFFESKWEQL 188
++ A +F GL+ A F + W QL
Sbjct: 189 PYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQL 248
Query: 189 CDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYI 248
D+ G IT+ ++R+ V VL P P+L+ + C + NW GI +++WPN +Y+
Sbjct: 249 THDIRTGTLSPKITDPSVRNCVAGVL-KPDPELADLVAGECSKDNWEGIITRIWPNTKYL 307
Query: 249 KCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYF 308
+ TG+M+QY + YY+G +P+ Y +SECY G+NL+ P + ++P AYF
Sbjct: 308 DVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYF 367
Query: 309 EFLPFDMEK---NEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSS 365
EFLP + + VD + VE+GK YE+V+TTY G YRYR+GDI++V F+NS+
Sbjct: 368 EFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSA 427
Query: 366 PQVEFVMRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKL 422
PQ FV R + E +L A+++ +LR V +VE+ + + ++ P
Sbjct: 428 PQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREV-NTSVVEYTSFADTKTIPGHY 486
Query: 423 MIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDR 481
+I+ E+ + S +L +CC ++E++ S+Y+ R I PL + +VK GTF+
Sbjct: 487 VIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEE 546
Query: 482 LLQVAIEKGAPASQYKPPKIVRNREIVEFME 512
L+ AI +GA +QYK P+ V I+E ++
Sbjct: 547 LMDYAISRGASINQYKVPRCVNFTPIMELLD 577
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 251 bits (641), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 163/580 (28%), Positives = 280/580 (48%), Gaps = 89/580 (15%)
Query: 4 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSC 63
+E K+L+D T N Q L+ I+ + YLQ +L D +K+ VP+
Sbjct: 14 NETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFL---IDRFDKELFKKNVPIVS 70
Query: 64 YDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQI 123
Y+D +++++ G+ +++ + F SSGTS K++P+ + L
Sbjct: 71 YEDIKPYLDRVVNGESSD----VISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTF-- 124
Query: 124 AIQGSVAILRRLFPPKH----DVNKILFFIYSDNKTTTKAGF--KVMAASAFP------- 170
+ LR KH + K + F+++ ++ T +G +V +S F
Sbjct: 125 -----IYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNR 179
Query: 171 ----------------------------LQGLIG-----------------AFSFFESKW 185
L GL+ A ++ W
Sbjct: 180 PSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSW 239
Query: 186 EQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNV 245
E+LC ++ +G+ +T++ ++SV VLGGP+P+L+ I IC +++W GI +LWPN
Sbjct: 240 EELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNT 299
Query: 246 RYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTA 305
+YI+ V TGSM QY + YY ++P++ Y +SE GINLD P+ + +P
Sbjct: 300 KYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNM 359
Query: 306 AYFEFLPFD-MEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNS 364
+YFEF+P D +KN+ VD V++G YE VVT + G YR R+GDIV V FYN+
Sbjct: 360 SYFEFIPMDGGDKNDV-----VDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNN 414
Query: 365 SPQVEFVMRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKK 421
+PQ +FV R + +E DL A+ +++L + +++ +F Y + + P
Sbjct: 415 APQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGH 473
Query: 422 LMIFVEI--REGCTKLRDSVAI----LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIV 474
++++E+ +EG K + L CC +E++ ++YK R + G I PL + +V
Sbjct: 474 YVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVV 533
Query: 475 KPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 514
+ GTFD L+ I +GA QYK P+ +++ + ++ +E C
Sbjct: 534 RQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETC 573
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 241 bits (614), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 162/580 (27%), Positives = 273/580 (47%), Gaps = 89/580 (15%)
Query: 4 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSC 63
+E K+L+D T N Q L+ I+ + YLQ +L D +K+ VP+
Sbjct: 14 NETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFL---IDRFDKELFKKNVPIVS 70
Query: 64 YDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQI 123
Y+D +++++ G+ +++ + F SSGTS K P+ + L
Sbjct: 71 YEDIKPYLDRVVNGESSD----VISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTF-- 124
Query: 124 AIQGSVAILRRLFPPKH----DVNKILFFIYSDNKTTTKAGF--KVMAASAFP------- 170
+ LR KH + K F+++ ++ T +G +V +S F
Sbjct: 125 -----IYDLRXQVITKHVKGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNR 179
Query: 171 ----------------------------LQGLIG-----------------AFSFFESKW 185
L GL+ A ++ W
Sbjct: 180 PSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSW 239
Query: 186 EQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNV 245
E+LC ++ +G+ +T++ ++SV VLGGP+P+L+ I IC +++W GI +LWPN
Sbjct: 240 EELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNT 299
Query: 246 RYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTA 305
+YI+ V TGS QY + YY ++P++ Y +SE GINLD P+ + P
Sbjct: 300 KYIETVVTGSXGQYVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNX 359
Query: 306 AYFEFLPFD-MEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNS 364
+YFEF+P D +KN+ VD V++G YE VVT + G YR R+GDIV V FYN+
Sbjct: 360 SYFEFIPXDGGDKNDV-----VDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNN 414
Query: 365 SPQVEFVMRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKK 421
+PQ +FV R + +E DL A+ +++L + +++ +F Y + + P
Sbjct: 415 APQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGH 473
Query: 422 LMIFVEI--REGCTKLRDSVAI----LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIV 474
++++E+ +EG K + L CC E++ ++YK R + G I PL + +V
Sbjct: 474 YVVYLEVDTKEGEEKETAQFELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEIRVV 533
Query: 475 KPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 514
+ GTFD L I +GA QYK P+ +++ + ++ +E C
Sbjct: 534 RQGTFDSLXDFFISQGASTGQYKTPRCIKSGKALQVLETC 573
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 169/566 (29%), Positives = 276/566 (48%), Gaps = 77/566 (13%)
Query: 7 ILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDD 66
++ + ++ T+NA + Q +TL+ IL + YLQ A +K VPL +
Sbjct: 19 VIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVE 78
Query: 67 YADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQ 126
+I ++ GD P+L P+ SSGTS +PK IP+ D + +
Sbjct: 79 LEPYIKRMVDGD----TSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQ--LFR 132
Query: 127 GSVAILRRLFPPKHDVNKILFFIYSDNK------------TTT-------KAGFK-VMAA 166
+ A R FP D K L FI+S + TT KAG K + +
Sbjct: 133 TAFAFRNRDFP-IDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSP 191
Query: 167 SAFP----------------------------------LQGLIGAFSFFESKWEQLCDDL 192
S P GL+ AF FE WE++ D+
Sbjct: 192 SCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDI 251
Query: 193 ENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGE-SNWSGIFSKLWPNVRYIKCV 251
++G IT ++R ++ ++L P P+L++ IR+ C SNW G+ L+PN +Y+ +
Sbjct: 252 KDGVLSNRITVPSVRTAMSKLLT-PNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGI 310
Query: 252 TTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFL 311
TGSM Y K+++YAG++P++ DY +SE ++ N+ P+ F ++P YFEFL
Sbjct: 311 MTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFL 370
Query: 312 PFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFV 371
P E E E+ V + V+IG+ YEVV+T Y G YRYRLGD+VKV+ FYN++PQ++F+
Sbjct: 371 PVS-ETGEG-EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFI 428
Query: 372 MRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 428
R + + +ERDL ++ES L +E+++F+ Y ++ + P IF EI
Sbjct: 429 CRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPGHYAIFWEI 487
Query: 429 REGCTKLRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAI 487
+ +L+ CC+ L+ AF + Y R I L + +V GTF ++ + +
Sbjct: 488 SGETNE-----DVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFL 542
Query: 488 EKGAPASQYKPPKIVR--NREIVEFM 511
G+ A Q+K P+ V+ N ++++ +
Sbjct: 543 GLGSSAGQFKMPRCVKPSNAKVLQIL 568
>pdb|3BV6|A Chain A, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|B Chain B, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|C Chain C, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|D Chain D, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|E Chain E, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|F Chain F, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
Length = 379
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 14 STKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHIN 72
+ K +++L Q + R GV LQP L P+D K + D+ADHI+
Sbjct: 90 TGKKTQKNRLMNTQHQMMRMGGVEALQPNLRTSIFPLDPFAIKEIDAVLASHDHADHID 148
>pdb|3L2E|A Chain A, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|C Chain C, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp
Length = 374
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 219 PDLSKRIRSICGESNWSGIFSKLW----PN-VRYIKCVTTGSMSQYCSKIKYYAGEVPVL 273
PDLSK + + + ++ K W PN V + KC+ TG + K+Y + +
Sbjct: 16 PDLSKHNNVMASQLTYE-LYEKYWDKVTPNGVTFDKCIQTGVDN---PGNKFYGKKTGCV 71
Query: 274 GGDYFASECY 283
GD ++ ECY
Sbjct: 72 FGDEYSYECY 81
>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
Length = 538
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 300 VMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVV 359
VML + F F +E N EE + E+GK Y +++ R + +
Sbjct: 1 VMLQPYKHEPFTDFTVEANRKAFEEALGLVEKELGKEYPLIINGERVTTEDK-------I 53
Query: 360 DFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNV 401
+N + + + V K++ + ++E+ + SA E+FQ RNV
Sbjct: 54 QSWNPARKDQLVGSVSKAN-QDLAEKAIQSADEAFQTW-RNV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,263,687
Number of Sequences: 62578
Number of extensions: 634156
Number of successful extensions: 1420
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 19
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)