Query 009765
Match_columns 526
No_of_seqs 134 out of 657
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 3E-110 1E-114 910.4 51.9 499 3-520 15-577 (581)
2 4eql_A 4-substituted benzoates 100.0 8E-111 3E-115 916.6 41.7 503 2-519 12-578 (581)
3 4b2g_A GH3-1 auxin conjugating 100.0 7E-110 2E-114 910.7 46.6 506 3-520 18-585 (609)
4 3qov_A Phenylacetate-coenzyme 99.9 9E-24 3.1E-28 224.0 22.1 387 9-481 9-421 (436)
5 2y4o_A Phenylacetate-coenzyme 99.9 8.3E-23 2.8E-27 217.0 24.7 379 12-480 18-426 (443)
6 2y27_A Phenylacetate-coenzyme 99.9 1E-22 3.4E-27 216.0 22.9 376 12-480 16-422 (437)
7 3hgu_A EHPF; phenazine, antibi 99.7 1E-16 3.5E-21 166.0 15.4 294 20-376 21-361 (369)
8 3etc_A AMP-binding protein; ad 99.5 8.2E-12 2.8E-16 137.3 25.1 129 242-393 340-496 (580)
9 3e7w_A D-alanine--poly(phospho 99.4 3.8E-11 1.3E-15 129.5 25.5 238 88-394 141-420 (511)
10 4fuq_A Malonyl COA synthetase; 99.4 3E-11 1E-15 130.2 23.2 132 240-393 265-420 (503)
11 3ivr_A Putative long-chain-fat 99.4 1.8E-12 6.2E-17 139.7 12.6 235 88-394 158-422 (509)
12 1pg4_A Acetyl-COA synthetase; 99.4 5.2E-11 1.8E-15 132.7 23.6 228 242-515 377-645 (652)
13 3l8c_A D-alanine--poly(phospho 99.4 2.2E-11 7.5E-16 131.5 19.9 240 88-393 143-424 (521)
14 3nyq_A Malonyl-COA ligase; A/B 99.4 2.1E-11 7E-16 131.7 19.3 159 242-429 271-455 (505)
15 2d1s_A Luciferase, luciferin 4 99.3 2.8E-11 9.5E-16 132.0 20.4 131 242-393 308-462 (548)
16 3ni2_A 4-coumarate:COA ligase; 99.3 2.5E-11 8.7E-16 131.8 19.9 131 241-393 295-455 (536)
17 2v7b_A Benzoate-coenzyme A lig 99.3 2E-11 6.8E-16 132.2 18.7 154 244-430 301-478 (529)
18 3fce_A D-alanine--poly(phospho 99.3 6.7E-11 2.3E-15 127.5 22.3 242 88-394 142-421 (512)
19 1t5h_X 4-chlorobenzoyl COA lig 99.3 1.7E-10 5.8E-15 124.2 24.9 158 242-430 271-452 (504)
20 3kxw_A Saframycin MX1 syntheta 99.3 4E-11 1.4E-15 131.2 19.7 108 329-453 392-529 (590)
21 1mdb_A 2,3-dihydroxybenzoate-A 99.3 4.7E-11 1.6E-15 129.8 18.9 128 242-393 297-451 (539)
22 1ry2_A Acetyl-coenzyme A synth 99.3 6.2E-11 2.1E-15 132.4 20.1 235 242-513 383-659 (663)
23 3g7s_A Long-chain-fatty-acid-- 99.3 2E-11 6.9E-16 132.9 15.8 242 90-393 180-460 (549)
24 3c5e_A Acyl-coenzyme A synthet 99.3 5.9E-11 2E-15 130.2 19.4 129 242-393 321-477 (570)
25 3rg2_A Enterobactin synthase c 99.3 1.1E-10 3.7E-15 129.1 20.1 130 241-393 300-455 (617)
26 3rix_A Luciferase, luciferin 4 99.3 3.4E-11 1.2E-15 131.2 15.7 132 242-394 306-461 (550)
27 3gqw_A Fatty acid AMP ligase; 99.3 1.8E-10 6.2E-15 125.4 20.5 60 330-394 405-483 (576)
28 3r44_A Fatty acyl COA syntheta 99.2 3E-10 1E-14 122.8 19.7 126 242-393 283-434 (517)
29 3o83_A Peptide arylation enzym 99.2 2.4E-11 8.3E-16 132.2 10.2 131 242-394 306-461 (544)
30 3ite_A SIDN siderophore synthe 99.2 2.8E-10 9.6E-15 124.1 15.6 130 242-394 293-449 (562)
31 3ipl_A 2-succinylbenzoate--COA 99.2 9.9E-10 3.4E-14 117.9 19.3 231 88-393 161-419 (501)
32 1amu_A GRSA, gramicidin synthe 99.1 1.9E-09 6.4E-14 118.0 21.3 129 243-393 293-451 (563)
33 3tsy_A Fusion protein 4-coumar 99.1 3.7E-10 1.3E-14 131.4 14.9 132 242-394 343-503 (979)
34 4gr5_A Non-ribosomal peptide s 99.1 2.9E-10 1E-14 124.4 12.7 132 242-394 325-491 (570)
35 4dg8_A PA1221; ANL superfamily 99.1 6.9E-10 2.4E-14 123.0 15.5 131 242-393 275-440 (620)
36 4gs5_A Acyl-COA synthetase (AM 99.0 2.6E-10 8.8E-15 117.9 7.9 121 242-396 147-274 (358)
37 1v25_A Long-chain-fatty-acid-C 98.9 9.6E-10 3.3E-14 119.5 8.1 166 184-394 255-457 (541)
38 2vsq_A Surfactin synthetase su 98.9 2.4E-08 8.2E-13 119.6 20.8 129 243-393 720-882 (1304)
39 3t5a_A Long-chain-fatty-acid-- 98.4 5E-06 1.7E-10 88.0 15.9 30 88-118 181-210 (480)
40 3lax_A Phenylacetate-coenzyme 96.1 0.0082 2.8E-07 50.5 6.1 89 373-480 2-93 (109)
41 3gxs_A Phenylacetate-coenzyme 96.0 0.011 3.7E-07 49.9 6.1 91 372-481 1-94 (109)
42 3onr_A Protein transport prote 54.6 31 0.0011 26.7 6.1 48 380-428 15-62 (72)
43 2cc6_A VNG1446H, dodecin; flav 47.3 42 0.0014 25.6 5.8 48 380-428 13-60 (68)
44 2ux9_A Dodecin; flavoprotein; 38.6 44 0.0015 25.6 4.7 48 380-428 15-62 (69)
45 2vxa_A Dodecin; flavoprotein, 37.9 45 0.0015 25.8 4.7 48 380-428 16-63 (72)
46 2yiz_A Dodecin; flavoprotein, 35.2 49 0.0017 25.3 4.4 48 380-428 15-62 (69)
47 2vjv_A Transposase ORFA; DNA-b 35.1 2.2E+02 0.0076 24.6 11.0 102 369-486 26-132 (159)
48 1lbj_A Motilin; A-helix, B-tur 28.8 27 0.00092 21.2 1.5 18 59-76 2-19 (26)
49 3isy_A Bsupi, intracellular pr 21.2 46 0.0016 28.3 2.3 41 307-356 23-65 (120)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=2.9e-110 Score=910.36 Aligned_cols=499 Identities=32% Similarity=0.591 Sum_probs=450.0
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchhhhh-hcCCCCCCChh-hHhhcCCCcchhhhhHHHHHHhCCCCC
Q 009765 3 TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAA-TYKRTVPLSCYDDYADHINQLAGGDHG 80 (526)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~-f~~i~~~~s~~-df~~~vPl~~y~d~~~~ier~~~Ge~~ 80 (526)
++++.+++||+.++|+.++|+++|++||++|++|+|||+| |++| ++|++ ||+++|||++|+|++|||||+++||.
T Consensus 15 ~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i--~~~~e~dF~~~VPi~~Yedl~pyIeRi~~Ge~- 91 (581)
T 4epl_A 15 DMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGN--ATDPEEAFKSMVPLVTDVELEPYIKRMVDGDT- 91 (581)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC------CHHHHHHHHSCCBCHHHHHHHHHHHHTTCC-
T ss_pred ccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcc--cCCHHHHHHHhCCCccHHHHHHHHHHHHCCCC-
Confidence 5778899999999999999999999999999999999999 9877 25789 99999999999999999999999995
Q ss_pred CCCCCCccCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCceEEEEeccCCccccC
Q 009765 81 QNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHD-VNKILFFIYSDNKTTTKA 159 (526)
Q Consensus 81 ~~~~~~l~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~ 159 (526)
++|||++||.+|..|||||+|++|+||+|+++++.++. +..++.++++++ |++. .||.|+++++++...+++
T Consensus 92 ---~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~--~~~~~~~~~~~~--p~l~~~Gk~L~l~~~s~~~~t~~ 164 (581)
T 4epl_A 92 ---SPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQ--LFRTAFAFRNRD--FPIDDNGKALQFIFSSKQYISTG 164 (581)
T ss_dssp ---SSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH--SCCCTTCEEEEECCCCCCEECTT
T ss_pred ---CCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHhhC--CccccCCcEEEEeecCCcccCCC
Confidence 59999999999999999999999999999999988544 556677777777 8888 899999888888888999
Q ss_pred CceeeeccchhHH------------------------------------------------------HHHHHHhhhHHHH
Q 009765 160 GFKVMAASAFPLQ------------------------------------------------------GLIGAFSFFESKW 185 (526)
Q Consensus 160 gip~g~~s~~~~~------------------------------------------------------~ll~~~~~l~~~w 185 (526)
|+|+|++|+++++ .++++++.++++|
T Consensus 165 Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~W 244 (581)
T 4epl_A 165 GVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVW 244 (581)
T ss_dssp SCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHH
Confidence 9999999998662 4566777899999
Q ss_pred HHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccC-CCCCcccccCCCCceEEEEecCchhhhHHHHH
Q 009765 186 EQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGES-NWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIK 264 (526)
Q Consensus 186 ~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~-g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~ 264 (526)
+++|+||++|++++++++|.+|++|++++ .|+|.+|++|+++|.+. .|.|++++|||||++|.||++|+|++|+++++
T Consensus 245 e~l~~dI~~gtl~~~it~~~~R~~l~~v~-~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~ 323 (581)
T 4epl_A 245 EEIVTDIKDGVLSNRITVPSVRTAMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLR 323 (581)
T ss_dssp HHHHHHHHHTCCCTTCCCHHHHHHHHTTC-CCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHH
T ss_pred HHHHHHHHhcCCCcCCCCHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHH
Confidence 99999999999999999999999999999 79999999999999985 69999999999999999999999999999999
Q ss_pred HHhCCCCeeccccccCCceeeeecCCCCCCCCcceecCCCceEEEeeeCCCCCccccCCceeccccccCCceEEEEEccC
Q 009765 265 YYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY 344 (526)
Q Consensus 265 ~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~ 344 (526)
+|+|++|+++.+|+||||++|+|+++.|++++..|+++|+.+||||||.++. +.+++++++++|||.|+.|||||||.
T Consensus 324 ~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~--~~~~~~~v~l~eve~G~~YelviTt~ 401 (581)
T 4epl_A 324 HYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET--GEGEEKPVGLTQVKIGEEYEVVITNY 401 (581)
T ss_dssp HHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC---------CCCEEGGGCCTTCEEEEEEEST
T ss_pred HHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccc--cCCCCceeeHHHcCCCCeEEEEEeec
Confidence 9998899999999999999999999999987789999999999999998764 34568899999999999999999999
Q ss_pred CCeecceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCce
Q 009765 345 RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKK 421 (526)
Q Consensus 345 ~GL~RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~ 421 (526)
+||||||+||+|+|+||+|++|+|+|+||.++ +.|||++|++|+.||.+|++.|.. +|+.|.||++.++.++.|||
T Consensus 402 ~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~-~~~~l~eft~~~d~~~~p~h 480 (581)
T 4epl_A 402 AGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPGH 480 (581)
T ss_dssp TSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHT-TTCCEEEEEEEEECSSSSCE
T ss_pred cceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcc-cCCeEEEEEEecCCCCCCCc
Confidence 99999999999999999999999999999998 999999999999999999987743 79999999999987777899
Q ss_pred EEEEEEeecCccccCCCHHHHHHHHHHHHHHh-ChhHHhhhhcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCCCCCc
Q 009765 422 LMIFVEIREGCTKLRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 500 (526)
Q Consensus 422 y~l~vE~~~~~~~~~~~~~~~~~~~~~ld~~L-n~~Y~~~R~~~~l~p~~v~~v~~g~f~~~~~~~~~~G~~~~Q~K~Pr 500 (526)
|++|||+.+. .+.+.+++||..||++| |++|+.+|..++|+|++|++|++|+|.+|+++++++|++.+|+|+||
T Consensus 481 yv~~wE~~~~-----~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR 555 (581)
T 4epl_A 481 YAIFWEISGE-----TNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPR 555 (581)
T ss_dssp EEEEEEESSC-----CCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCS
T ss_pred EEEEEeecCC-----CCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCe
Confidence 9999999642 45678999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cc--CCHhHHHHHhccceEEEe
Q 009765 501 IV--RNREIVEFMEGCSLVTVR 520 (526)
Q Consensus 501 ~~--~~~~~~~~l~~~~~~~~~ 520 (526)
|+ ++++++++|+++|+++-.
T Consensus 556 ~~~~~~~~~~~~L~~~v~~~~~ 577 (581)
T 4epl_A 556 CVKPSNAKVLQILCENVVSSYF 577 (581)
T ss_dssp SCCTTCHHHHHHHHTTEEEEEE
T ss_pred eecCCCHHHHHHHHhccccccc
Confidence 99 999999999999998654
No 2
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=8.4e-111 Score=916.64 Aligned_cols=503 Identities=30% Similarity=0.611 Sum_probs=402.2
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchhhhhhcCCCCCCChhhHhhcCCCcchhhhhHHHHHHhCCCCCC
Q 009765 2 MTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQ 81 (526)
Q Consensus 2 ~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~f~~i~~~~s~~df~~~vPl~~y~d~~~~ier~~~Ge~~~ 81 (526)
+.+++.+++||+.++|+.++|+++|++||++|++|+|||+||++| ++++||+++|||++|+|++|||+|+++||.
T Consensus 12 ~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~f~~i---~~~~~F~~~VPi~~Yedl~pyIeRi~~Ge~-- 86 (581)
T 4eql_A 12 DINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDR---FDKELFKKNVPIVSYEDIKPYLDRVVNGES-- 86 (581)
T ss_dssp --CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHTTCCS---CCHHHHHHHSCCBCHHHHHHHHHHHHTTCC--
T ss_pred CCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHHhhcC---CCHHHHHHhCCCccHHHHHHHHHHHHcCCC--
Confidence 356788999999999999999999999999999999999999999 999999999999999999999999999997
Q ss_pred CCCCCccCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCc
Q 009765 82 NDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF 161 (526)
Q Consensus 82 ~~~~~l~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gi 161 (526)
++|||++||.+|..|||||+|++|+||+|+++++.++. ++.++.++++++ .|.+..||.|++++......|++|+
T Consensus 87 --~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~--~~~~~~~~~~~~-~p~~~~Gk~l~l~~~~~~~~t~~G~ 161 (581)
T 4eql_A 87 --SDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTF--IYDLRMQVITKH-VKGVEEGKGMMFLFTKQESMTPSGL 161 (581)
T ss_dssp --GGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH-CCSCTTSEEEECCCCCCCEECTTSC
T ss_pred --CcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHHhc-CCccccCCEEEEeccCCcccCCCCe
Confidence 79999999999999999999999999999999998654 688888888876 3666679999977777778889999
Q ss_pred eeeeccchhHH------------------------------------------------------HHHHHHhhhHHHHHH
Q 009765 162 KVMAASAFPLQ------------------------------------------------------GLIGAFSFFESKWEQ 187 (526)
Q Consensus 162 p~g~~s~~~~~------------------------------------------------------~ll~~~~~l~~~w~~ 187 (526)
|+|++|+++++ .++++++.++++|++
T Consensus 162 ~~g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~wee 241 (581)
T 4eql_A 162 PARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEE 241 (581)
T ss_dssp EEECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eecccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHH
Confidence 99999987762 355677788999999
Q ss_pred HHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcccccCCCCceEEEEecCchhhhHHHHHHHh
Q 009765 188 LCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYA 267 (526)
Q Consensus 188 l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~ 267 (526)
+|+||++|+++++++++.+|.++..++..|+|++|++|+++|.+.+|.|++++|||||++|.||++|+|++|+++|++|+
T Consensus 242 l~~dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~ 321 (581)
T 4eql_A 242 LCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYC 321 (581)
T ss_dssp HHHHHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHH
T ss_pred HHHHHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHc
Confidence 99999999999999999999999999955999999999999998668899999999999999999999999999999999
Q ss_pred CCCCeeccccccCCceeeeecCCCCCCCCcceecCCCceEEEeeeCCCCCccccCCceeccccccCCceEEEEEccCCCe
Q 009765 268 GEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGF 347 (526)
Q Consensus 268 g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~~GL 347 (526)
|++|+++.+|+||||++|+|+++.|+++...|+++|+.+||||||.++. +++++++++|||.|+.|||||||.+||
T Consensus 322 g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~----~~~~~v~l~eVe~G~~YelViTt~~GL 397 (581)
T 4eql_A 322 NDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGG----DKNDVVDLEDVKLGCTYEPVVTNFAGL 397 (581)
T ss_dssp TTCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTT----CCSSCEEGGGCCTTCEEEEEEECSSSC
T ss_pred CCCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecccc----CCCcEeCHHHcCCCceEEEEEeeccce
Confidence 9999999999999999999999999887778889999999999998753 457899999999999999999999999
Q ss_pred ecceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEE
Q 009765 348 YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMI 424 (526)
Q Consensus 348 ~RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l 424 (526)
||||+||+|+|+||++++|+|+|+||.++ +.|||++|++|++||.+|++.|+. +|++|.||++.++.++.|+||++
T Consensus 398 ~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~-~g~~l~eft~~~~~~~~p~Hy~~ 476 (581)
T 4eql_A 398 YRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVV 476 (581)
T ss_dssp CSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC---------------CEEEECSSSSBEEEE
T ss_pred eeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhh-cCCEEEEEEEecCCCCCCCeEEE
Confidence 99999999999999999999999999998 999999999999999999965532 79999999999887777899999
Q ss_pred EEEeec-Cc-----cccCCCHHHHHHHHHHHHHHhChhHHhhh-hcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCCC
Q 009765 425 FVEIRE-GC-----TKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYK 497 (526)
Q Consensus 425 ~vE~~~-~~-----~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R-~~~~l~p~~v~~v~~g~f~~~~~~~~~~G~~~~Q~K 497 (526)
|||+.. +. .....+++.+++||..||++||++|+.+| ..++|+|++|++|++|+|.+|+++++++|++.||+|
T Consensus 477 ~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~gQ~K 556 (581)
T 4eql_A 477 YLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYK 556 (581)
T ss_dssp ECC---------------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC------------------------
T ss_pred EEEEecccccccccccCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcC
Confidence 999852 00 00123457899999999999999999999 555999999999999999999999999999999999
Q ss_pred CCcccCCHhHHHHHhccceEEE
Q 009765 498 PPKIVRNREIVEFMEGCSLVTV 519 (526)
Q Consensus 498 ~Pr~~~~~~~~~~l~~~~~~~~ 519 (526)
+|||+++++++++|+++|+++-
T Consensus 557 ~PR~~~~~~~~~~L~~~v~~~~ 578 (581)
T 4eql_A 557 TPRCIKSGKALQVLETCVVAKF 578 (581)
T ss_dssp --------------------CE
T ss_pred CCcccCCHHHHHHHHhcchhee
Confidence 9999999999999999999853
No 3
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=6.6e-110 Score=910.70 Aligned_cols=506 Identities=32% Similarity=0.626 Sum_probs=445.1
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCchhhhh-hcCCCCCCChhhHhhcCCCcchhhhhHHHHHHhCCCCCC
Q 009765 3 TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQ 81 (526)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~t~ygr~~-f~~i~~~~s~~df~~~vPl~~y~d~~~~ier~~~Ge~~~ 81 (526)
.+++.++.||+.++|+.++|+++|++||++|++|+|||+| |++| +|++||+++|||++|+|++|||+|+++||.
T Consensus 18 ~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i---~~~~dF~~~VPv~~Yedl~p~ieRi~~Ge~-- 92 (609)
T 4b2g_A 18 KDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGS---TVRETFKSKIPVIKYEDLQPEIQRIANGDR-- 92 (609)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTC---CSHHHHHHHSCCBCHHHHHHHHHHHHTTCC--
T ss_pred chHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCC---CCHHHHHHhCCCccHHHHHHHHHHHhcCCC--
Confidence 4577899999999999999999999999999999999999 9999 999999999999999999999999999997
Q ss_pred CCCCCccCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCc
Q 009765 82 NDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF 161 (526)
Q Consensus 82 ~~~~~l~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gi 161 (526)
.++||++||.+|+.|||||+|++|+||+|+++++.+.. ++.++.++++++ .|.+..||.|++++++....+++|+
T Consensus 93 --~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~--~~~~~~~~~~~~-~p~~~~Gk~l~l~~~~~~~~t~~Gi 167 (609)
T 4b2g_A 93 --SAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQM--LYSLLMPVMNLY-VPGLDKGKGLYFLFVKSETRTPGGL 167 (609)
T ss_dssp --SSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHH--HHHHHHHHHHHH-SCCGGGSEEEECCCCCCCEECTTSC
T ss_pred --CCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHH--HHHHHHHHHHhc-CCcccCCCeEEEcccCCcccCCCCc
Confidence 68999999999999999999999999999999998554 688888888876 3566679999977888888889999
Q ss_pred eeeeccchhHH------------------------------------------------------HHHHHHhhhHHHHHH
Q 009765 162 KVMAASAFPLQ------------------------------------------------------GLIGAFSFFESKWEQ 187 (526)
Q Consensus 162 p~g~~s~~~~~------------------------------------------------------~ll~~~~~l~~~w~~ 187 (526)
|+|++|+++++ .++++++.++++|++
T Consensus 168 ~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Wee 247 (609)
T 4b2g_A 168 LARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQ 247 (609)
T ss_dssp EEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHH
Confidence 99999987762 456777889999999
Q ss_pred HHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcccccCCCCceEEEEecCchhhhHHHHHHHh
Q 009765 188 LCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYA 267 (526)
Q Consensus 188 l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~ 267 (526)
+|+||++|+++++++++.+|.+|++++ .|+|.+|++|+++|.+.+|.|++++|||||++|.||++|+|++|+++|++++
T Consensus 248 l~~dI~~gtl~~~it~~~~r~a~~~~l-sp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~ 326 (609)
T 4b2g_A 248 LTHDIRTGTLSPKITDPSVRNCVAGVL-KPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYS 326 (609)
T ss_dssp HHHHHHHTCCCTTCCCHHHHHHTTTTC-CCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHH
T ss_pred HHHHHHhccCCcCCCCHHHHHHHhcCC-CcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHc
Confidence 999999999999999999999999998 6999999999999998779999999999999999999999999999999999
Q ss_pred CCCCeeccccccCCceeeeecCCCCCCCCcceecCCCceEEEeeeCCCCC---ccccCCceeccccccCCceEEEEEccC
Q 009765 268 GEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK---NEAVGEETVDFSGVEIGKMYEVVVTTY 344 (526)
Q Consensus 268 g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~---~~~~~~~~l~l~ele~G~~yelVvTt~ 344 (526)
|++|+++.+|+||||++|+|+++.|+++...|+++|+.+||||||+++.+ .+.+++++++++|||.|+.|||||||.
T Consensus 327 g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~ 406 (609)
T 4b2g_A 327 GGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY 406 (609)
T ss_dssp TSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT
T ss_pred CCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhh
Confidence 89999999999999999999999998877889999999999999987531 035668899999999999999999999
Q ss_pred CCeecceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCce
Q 009765 345 RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKK 421 (526)
Q Consensus 345 ~GL~RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~ 421 (526)
+||||||+||+|+|+||+|++|+|+|+||.++ +.|||++|++|++||.+|++.|+. +|++|.||++.++.++.|||
T Consensus 407 ~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~-~g~~l~eft~~~d~~~~p~H 485 (609)
T 4b2g_A 407 AGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLRE-VNTSVVEYTSFADTKTIPGH 485 (609)
T ss_dssp TSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGG-TTEEEEEEEEEEECSSSSCE
T ss_pred hhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhc-cCCeEEEEEEecCCCCCCCc
Confidence 99999999999999999999999999999998 899999999999999999976633 79999999999887777899
Q ss_pred EEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHhhh-hcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCCCCCc
Q 009765 422 LMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 500 (526)
Q Consensus 422 y~l~vE~~~~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R-~~~~l~p~~v~~v~~g~f~~~~~~~~~~G~~~~Q~K~Pr 500 (526)
|++|||+.......+.+++.+++||..||++||++|+.+| ..++|+|++|++|++|+|.+|+++++++|++.+|+|+||
T Consensus 486 yv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR 565 (609)
T 4b2g_A 486 YVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPR 565 (609)
T ss_dssp EEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC----------------CCS
T ss_pred EEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCc
Confidence 9999999620000234568899999999999999999999 455999999999999999999999999999999999999
Q ss_pred ccCCHhHHHHHhccceEEEe
Q 009765 501 IVRNREIVEFMEGCSLVTVR 520 (526)
Q Consensus 501 ~~~~~~~~~~l~~~~~~~~~ 520 (526)
|+++++++++|+++|+++-.
T Consensus 566 ~~~~~~~~~~L~~~v~~~~~ 585 (609)
T 4b2g_A 566 CVNFTPIMELLDSRVVSSHF 585 (609)
T ss_dssp SCC--CCHHHHHTTEEEEEE
T ss_pred ccCCHHHHHHHHhccccccc
Confidence 99999999999999998654
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.92 E-value=9e-24 Score=224.02 Aligned_cols=387 Identities=13% Similarity=0.103 Sum_probs=228.9
Q ss_pred HHHHHH-HHhHHHHHHHHHHHHHHhccCCchhhhhhcCCC-CC---CChhhHhhcCCCcchhhhhHHHHHHhCCCCCCCC
Q 009765 9 KKLEDS-TKNATRHQLETLQSILERQSGVRYLQPYLSGCC-AP---IDAATYKRTVPLSCYDDYADHINQLAGGDHGQND 83 (526)
Q Consensus 9 ~~~e~~-~~~~~~~Q~~~L~~iL~~~~~t~ygr~~f~~i~-~~---~s~~df~~~vPl~~y~d~~~~ier~~~Ge~~~~~ 83 (526)
..+|++ ..++++.|.+.|++++++..+++|||++|++.| .| .+.+|+. ++|++++++++.... +
T Consensus 9 ~~~e~~~~~~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p----------~ 77 (436)
T 3qov_A 9 EEIEIMSREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP----------F 77 (436)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT----------T
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC----------C
Confidence 345666 678899999999999998899999998755333 11 7889996 899999999975321 1
Q ss_pred CCC-ccC-CCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCc
Q 009765 84 QPL-LAV-DPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF 161 (526)
Q Consensus 84 ~~~-l~~-~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gi 161 (526)
... ... +.+.++..||||| |+||-+++|.+.+..+.. .+... +. . .++..+..+... .+.....++
T Consensus 78 ~~~~~~~~~~~a~i~~TSGTT-G~PK~v~~th~~~~~~~~----~~~~~-~~-~--~~~~~~d~~~~~--~~~~~~~~~- 145 (436)
T 3qov_A 78 GLVAGDMKRDGVRIHSSSGTT-GNPTVIVHSQHDLDSWAN----LVARC-LY-M--VGIRKTDVFQNS--SGYGMFTGG- 145 (436)
T ss_dssp TTCCSCHHHHEEEEEECSCSS-SCCCEEEEEHHHHHHHHH----HHHHH-HH-H--TTCCTTSEEEEC--SCCTTCHHH-
T ss_pred ccccCCCcCCeEEEEECCCcC-CCCeEEEECHHHHHHHHH----HHHHH-HH-H--cCCCCCCEEEEC--cccccchhH-
Confidence 111 122 4566889999999 999999999987755332 11111 11 1 233333222211 111000000
Q ss_pred eeeeccchhHHHHHHHHh--hh-HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcc
Q 009765 162 KVMAASAFPLQGLIGAFS--FF-ESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIF 238 (526)
Q Consensus 162 p~g~~s~~~~~~ll~~~~--~l-~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~ 238 (526)
... .+..+..... .. ..+-+.+++.|++.. ++. +.+.|+ .+..|.+...+.+. .
T Consensus 146 ----~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~----~t~---------~~~~P~--~~~~l~~~~~~~~~---~ 202 (436)
T 3qov_A 146 ----LGF-QYGAERLGCLTVPAAAGNSKRQIKFISDFK----TTA---------LHAIPS--YAIRLAEVFQEEGI---D 202 (436)
T ss_dssp ----HHH-HHHHHHHTCEEECCCSCCHHHHHHHHHHHT----CCE---------EECCHH--HHHHHHHHHHHTTC---C
T ss_pred ----HHH-HHHHHHcCCEEEeCCCCCHHHHHHHHHHHC----CCE---------EEECHH--HHHHHHHHHHHcCC---C
Confidence 000 0000000000 00 112245556666555 222 454554 66666666654321 1
Q ss_pred cccCCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCc-eeeeecCCCCCCCCcceecCCCceEEEeeeCC
Q 009765 239 SKLWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASEC-YVGINLDIAQPPQTTRFVMLPTAAYFEFLPFD 314 (526)
Q Consensus 239 ~~lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg-~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~ 314 (526)
. -+++++ .+++||. ...++.+++.| +++++ +.||+||+ ..++... |+...+ +.+......+|+++++
T Consensus 203 ~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~--~~~~~g-~~~~~~~~~v~i~d~~ 273 (436)
T 3qov_A 203 P-RETTLK---TLVIGAEPHTDEQRRKIERML-NVKAY-NSFGMTEMNGPGVAFE--CQEQNG-MHFWEDCYLVEIIDPE 273 (436)
T ss_dssp T-TSSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEEGGGTEEEEEEE--CTTCSS-EEECTTTEEEEEECTT
T ss_pred c-ccCCcc---EEEEeCCcCCHHHHHHHHHHh-CccEE-ecCcchhhcCCeeEEe--cCCCCe-eEEccCceEEEEEECC
Confidence 1 235777 3344432 46668888888 59999 99999997 3323222 222223 4455556788999865
Q ss_pred CCCccccCCceeccccccCCceEEEEEccCC----CeecceeCCEEEEeeecCC----CCEE-EEeeeCCC---cceeec
Q 009765 315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTYR----GFYRYRLGDIVKVVDFYNS----SPQV-EFVMRAPK---SSFEII 382 (526)
Q Consensus 315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~~----GL~RYr~GDvV~v~g~~~~----~P~i-~f~gR~~~---i~gEk~ 382 (526)
+ + ..+.+|+.+||+||+.. .+.||+|||++++....|. .|+| .|+||.++ +.|+++
T Consensus 274 ~-------g-----~~~~~g~~Gel~v~~~~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v 341 (436)
T 3qov_A 274 T-------G-----EPVPEGEIGELVLTTLDREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNI 341 (436)
T ss_dssp T-------C-----SBCSTTCCEEEEEEESSCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEE
T ss_pred C-------C-----CCCCCCCceEEEEeccCcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEE
Confidence 4 2 34568999999999752 2679999999999854222 3445 99999998 889999
Q ss_pred CHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHhhhh
Q 009765 383 SERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRD 462 (526)
Q Consensus 383 ~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R~ 462 (526)
.+.+|+++|.+. .++.- .+++..+........+++|+.. +. ...+....+++.+.+.+.|.. |.
T Consensus 342 ~p~eiE~~l~~~-------p~v~~-~~vv~~~~~~~~~~l~a~v~~~-~~--~~~~~~~~~~l~~~l~~~l~~-~~---- 405 (436)
T 3qov_A 342 FPMQVEKILVQF-------PELGS-NYLITLETVNNQDEMIVEVELS-DL--STDNYIELEKIRRDIIRQLKD-EI---- 405 (436)
T ss_dssp CHHHHHHHHTTC-------TTEEE-EEEEEEEEETTEEEEEEEEEEC-TT--CCCCHHHHHHHHHHHHHHHHH-HH----
T ss_pred CHHHHHHHHHhC-------cCcCC-cEEEEEEcCCCCcEEEEEEEEc-Cc--cccchhhHHHHHHHHHHHHHH-hc----
Confidence 999999888753 33221 3333333222234667888886 31 111222334455555555511 11
Q ss_pred cCCCCCcEEEEeCCCcHHH
Q 009765 463 RGEISPLSVSIVKPGTFDR 481 (526)
Q Consensus 463 ~~~l~p~~v~~v~~g~f~~ 481 (526)
-.|..|.+|+.+.|++
T Consensus 406 ---~~p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 406 ---LVTPKVKLVKKGSLPQ 421 (436)
T ss_dssp ---SSCCEEEEECTTCCC-
T ss_pred ---CCceEEEEeCCCcccC
Confidence 2466899999888873
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.91 E-value=8.3e-23 Score=217.04 Aligned_cols=379 Identities=14% Similarity=0.087 Sum_probs=223.8
Q ss_pred HHH-HHhHHHHHHHHHHHHHHhc-cCCchhhhhhc-------CCCCCCChhhHhhcCCCcchhhhhHHHHHHhCCCCCCC
Q 009765 12 EDS-TKNATRHQLETLQSILERQ-SGVRYLQPYLS-------GCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQN 82 (526)
Q Consensus 12 e~~-~~~~~~~Q~~~L~~iL~~~-~~t~ygr~~f~-------~i~~~~s~~df~~~vPl~~y~d~~~~ier~~~Ge~~~~ 82 (526)
|.+ ..++++.|.+.|+++|++. .+++||+++|+ ++ .+++|++ ++|+++|++++.... .+-
T Consensus 18 ~~~~~~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i---~~~~dl~-~lP~~~~~~l~~~~p---~~~---- 86 (443)
T 2y4o_A 18 ETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDL---KSLADLA-KFPFSTKNDLRDNYP---FGL---- 86 (443)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGC---CSGGGGG-GSCCBCHHHHHTTTT---TTT----
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhC---CCHHHHH-HCCCCcHHHHHhhCC---Ccc----
Confidence 444 5678999999999999986 89999998743 35 7899996 899999999965321 010
Q ss_pred CCCCccCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCce
Q 009765 83 DQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFK 162 (526)
Q Consensus 83 ~~~~l~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip 162 (526)
.-...+.+.++..||||| |+||.+++|.+.+..+....... .. . .++..+..+.... +.....+++
T Consensus 87 --~~~~~~~~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~-----~~-~--~~~~~~d~~l~~~--~~~~~~~~~- 152 (443)
T 2y4o_A 87 --FAVPREQVVRVHASSGTT-GKPTVVGYTARDIDTWANVTARS-----IR-A--AGGRPGDTLHNAF--GYGLFTGGL- 152 (443)
T ss_dssp --CSSCGGGCCEEEEECCSS-SSCEEEEECHHHHHHHHHHHHHH-----HH-H--TTCCTTCEEEECS--CCSSSHHHH-
T ss_pred --cCCChhheEEEEECCCCC-CCceEEecCHHHHHHHHHHHHHH-----HH-H--cCCCCCCEEEEec--cCcccccHH-
Confidence 112445666889999999 99999999998875533211111 11 1 2333332222121 110000000
Q ss_pred eeeccchhHHHHHHHHh--hh-HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCccc
Q 009765 163 VMAASAFPLQGLIGAFS--FF-ESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFS 239 (526)
Q Consensus 163 ~g~~s~~~~~~ll~~~~--~l-~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~ 239 (526)
. ..+..+..... .. ..+.+.+++.|++.. ++. +.+.|+ .+..|.+...+.+. ..
T Consensus 153 ----~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~----~t~---------l~~~Ps--~~~~l~~~~~~~~~---~~ 209 (443)
T 2y4o_A 153 ----G-IHYGAERLGCMVVPMSGGQTEKQVQLIRDFE----PKI---------ILVTPS--YMLNLIDEMVRQGM---DP 209 (443)
T ss_dssp ----H-HHHHHHHHTCEEECCCSCCHHHHHHHHHHHC----CSE---------EEECHH--HHHHHHHHHHHTTC---CG
T ss_pred ----H-HHHHHHHcCCEEEECCCCCHHHHHHHHHHhC----CcE---------EEECHH--HHHHHHHHHHHcCC---Cc
Confidence 0 00000000000 00 113445556666555 222 454555 56666666554321 11
Q ss_pred ccCCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCc-e--eeeecCCCCCCCC-cceecCCCceEEEeeeC
Q 009765 240 KLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASEC-Y--VGINLDIAQPPQT-TRFVMLPTAAYFEFLPF 313 (526)
Q Consensus 240 ~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg-~--i~i~~~~~~~~~~-~~~~l~~~~~f~EFip~ 313 (526)
-+++++. ++.+|. + ...++++++.| +++++ +.||+||+ . ++... +... | +.+......+|++++
T Consensus 210 -~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~g~~~~~~~----~~~~~g-~~~~~~~~~~~i~d~ 279 (443)
T 2y4o_A 210 -AESSLKI--GIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSEVMGPGVACEC----VETKDG-PVIWEDHFYPEIIDP 279 (443)
T ss_dssp -GGSSCCE--EEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETTTTEEEEEEEC----TTTCCS-EEECTTTEEEEEECT
T ss_pred -ccCCceE--EEECCCcCCHHHHHHHHHHh-CcCEE-eccCchhhcCCeEEecc----CCCCCc-eEEccCCeEEEEEcC
Confidence 2357883 333443 2 46778888888 59999 99999995 3 44432 2222 3 445556678999986
Q ss_pred CCCCccccCCceeccccccCCceEEEEEccCCC----eecceeCCEEEEeeec-C-CCCEE-EEeeeCCC---cceeecC
Q 009765 314 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG----FYRYRLGDIVKVVDFY-N-SSPQV-EFVMRAPK---SSFEIIS 383 (526)
Q Consensus 314 ~~~~~~~~~~~~l~l~ele~G~~yelVvTt~~G----L~RYr~GDvV~v~g~~-~-~~P~i-~f~gR~~~---i~gEk~~ 383 (526)
++ + ..+..|+.|||+||+... +.||+|||++++.. . + ..|+| .|+||.++ +.|++++
T Consensus 280 ~~-------g-----~~~~~G~~Gel~v~~~t~~~~p~~~y~TGDl~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v~ 346 (443)
T 2y4o_A 280 VT-------G-----EVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLP-PTARAMRRLAKITGRSDDMLIVRGVNVF 346 (443)
T ss_dssp TT-------C-----CBCCTTCCEEEEEEESSCSSSCCSSEEEEEEECEEC-CSSSSSCEECCCCEESSCCEEETTEEEC
T ss_pred CC-------C-----CCCCCCCceEEEEeCCCcccChhheeecCCEEEEcC-CCCCCccccCccccccCCeEEECCEEEC
Confidence 53 2 235689999999997643 67999999999986 3 2 24677 89999998 7899999
Q ss_pred HHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeec--CccccCCCHHHHHHHHHHHHHHhChhHHhhh
Q 009765 384 ERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE--GCTKLRDSVAILRRCCSSLEDAFGSIYKVQR 461 (526)
Q Consensus 384 e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~--~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~R 461 (526)
+.+|++++.+. .++.- .+++...........+++|+..+ +. .......+++.+.+.+.| .
T Consensus 347 p~eiE~~l~~~-------p~V~~-~~vv~~~~~~~~~~~~a~v~~~~~~~~---~~~~~~~~~l~~~l~~~l-------~ 408 (443)
T 2y4o_A 347 PSQIEEIVVAL-------PLLSG-QFQITLSRDGHMDRLDLAVELRSEAAA---SVTDGERAALARELQHRI-------K 408 (443)
T ss_dssp HHHHHHHHHTS-------TTEEE-EEEEEEEEETTEEEEEEEEEECHHHHT---TCCHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHhC-------cCcCc-cEEEEEecCCCCceEEEEEEECCcccc---cchhhHHHHHHHHHHHHH-------H
Confidence 99999888753 34221 33333222111345567888753 10 011223334445555555 1
Q ss_pred hcCCCCCcEEEEeCCCcHH
Q 009765 462 DRGEISPLSVSIVKPGTFD 480 (526)
Q Consensus 462 ~~~~l~p~~v~~v~~g~f~ 480 (526)
.. .-.|..|.+|+.+.|+
T Consensus 409 ~~-~~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 409 TM-VGVSSGVTVLAAGGIP 426 (443)
T ss_dssp HH-TCCCCEEEEECTTCSC
T ss_pred HH-hCCceEEEEeCCCccc
Confidence 11 1145688999877776
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.90 E-value=1e-22 Score=216.04 Aligned_cols=376 Identities=15% Similarity=0.100 Sum_probs=224.0
Q ss_pred HHH-HHhHHHHHHHHHHHHHHhc-cCCchhhhhhc-------CCCCCCChhhHhhcCCCcchhhhhHHHHHHhCCCCCCC
Q 009765 12 EDS-TKNATRHQLETLQSILERQ-SGVRYLQPYLS-------GCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQN 82 (526)
Q Consensus 12 e~~-~~~~~~~Q~~~L~~iL~~~-~~t~ygr~~f~-------~i~~~~s~~df~~~vPl~~y~d~~~~ier~~~Ge~~~~ 82 (526)
|.+ .++.++.|.+.|+.+|++. .+++||+++|. ++ .+++||. ++|+++|++++.... .+ .
T Consensus 16 ~~~~~~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i---~~~~dl~-~lP~~~~~~l~~~~~---~~-~--- 84 (437)
T 2y27_A 16 ETASRDELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDL---KTLADLS-RFPFTTKGDLRDSYP---FG-M--- 84 (437)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGC---SSGGGGG-GSCCBCHHHHHHTTT---TT-T---
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhC---CCHHHHH-HCCCCCHHHHHhcCC---Cc-c---
Confidence 444 5678999999999999986 89999998743 35 7899996 899999999965321 01 0
Q ss_pred CCCCccCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCce
Q 009765 83 DQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFK 162 (526)
Q Consensus 83 ~~~~l~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip 162 (526)
.-...+.+.++..||||| |+||-+++|.+.+..+....... .. . .++..+..+.... +.....+++
T Consensus 85 --~~~~~~~~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~-----~~-~--~~~~~~d~~~~~~--~~~~~~~~~- 150 (437)
T 2y27_A 85 --FAVPQDRISRIHASSGTT-GKPTVVGYTAADIDTWANLVARS-----IR-A--AGARRGDKVHVSY--GYGLFTGGL- 150 (437)
T ss_dssp --CSSCGGGCCEEEECCCTT-SSCCEEEECHHHHHHHHHHHHHH-----HH-H--TTCCTTCEEEECS--CCSSSHHHH-
T ss_pred --ccCChhHeEEEEECCCCC-CCceEEecCHHHHHHHHHHHHHH-----HH-H--cCCCCCCEEEEcc--cccccccch-
Confidence 112345666889999999 99999999998875533211111 11 1 2333332222121 110000000
Q ss_pred eeeccchhHHHHHHHHh------hh-HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCC
Q 009765 163 VMAASAFPLQGLIGAFS------FF-ESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWS 235 (526)
Q Consensus 163 ~g~~s~~~~~~ll~~~~------~l-~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~ 235 (526)
..++.++. .+ ..+.+.+++.|++.. ++. +.+.|+ .+..|.+...+.+.
T Consensus 151 ---------~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~----~t~---------l~~~Ps--~~~~l~~~~~~~~~- 205 (437)
T 2y27_A 151 ---------GAHYGAERAGLTVIPFGGGQTEKQVQLIQDFR----PDI---------IMVTPS--YMLSIADEIERQGL- 205 (437)
T ss_dssp ---------HHHHHHHHTTCEEECCCSCCHHHHHHHHHHHC----CSE---------EEECHH--HHHHHHHHHHHTTC-
T ss_pred ---------HHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhC----CCE---------EEECHH--HHHHHHHHHHHcCC-
Confidence 00000000 00 013455566666655 222 454554 56666666554321
Q ss_pred CcccccCCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCc-e--eeeecCCCCCCCC-cceecCCCceEEE
Q 009765 236 GIFSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASEC-Y--VGINLDIAQPPQT-TRFVMLPTAAYFE 309 (526)
Q Consensus 236 g~~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg-~--i~i~~~~~~~~~~-~~~~l~~~~~f~E 309 (526)
.. -+++++. ++++|. + ...++.+++.| +++++ +.||+||+ . ++++ |+... + +.+.....++|
T Consensus 206 --~~-~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~g~~~~~~----~~~~~~g-~~~~~~~~~~~ 273 (437)
T 2y27_A 206 --DP-VQSSLRI--GIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLSEVMGPGVASE----CVETKDG-PTIWEDHFYPE 273 (437)
T ss_dssp --CG-GGSSCCE--EEEESSCCCHHHHHHHHHHH-TSEEE-EEEEETTTTEEEEEEC----CTTTCSS-CEECTTTEEEE
T ss_pred --Cc-ccCCeeE--EEEcCccCCHHHHHHHHHHH-CcCEE-ecCCchhhcCCeeEEe----cCCCCCc-eeEccCceEEE
Confidence 11 1467883 333443 2 46678888888 59999 99999995 2 4443 22222 3 34455667899
Q ss_pred eeeCCCCCccccCCceeccccccCCceEEEEEccCCC----eecceeCCEEEEeeecC-CCCEE-EEeeeCCC---ccee
Q 009765 310 FLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG----FYRYRLGDIVKVVDFYN-SSPQV-EFVMRAPK---SSFE 380 (526)
Q Consensus 310 Fip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~~G----L~RYr~GDvV~v~g~~~-~~P~i-~f~gR~~~---i~gE 380 (526)
++++++ + ..+..|+.|||+||+... +.||+|||++++....+ ..|+| .|+||.++ +.|+
T Consensus 274 i~d~~~-------g-----~~~~~g~~Gel~v~~~t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~ 341 (437)
T 2y27_A 274 IIDPET-------G-----EVLPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGV 341 (437)
T ss_dssp EECTTT-------C-----CBCCTTCCEEEEEEESSCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTE
T ss_pred EEcCCC-------C-----CCCCCCCccEEEEecCCcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCe
Confidence 998653 2 235689999999997643 67999999999986322 36788 89999998 7899
Q ss_pred ecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHhh
Q 009765 381 IISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQ 460 (526)
Q Consensus 381 k~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~ld~~Ln~~Y~~~ 460 (526)
++++.+|++++.+. .++.- .+++..+........+++|+...+ ...+....+++.+.+.+.|. .|.
T Consensus 342 ~v~p~eiE~~l~~~-------p~V~~-~~vv~~~~~~~~~~l~a~v~~~~~---~~~~~~~~~~l~~~l~~~l~-~~~-- 407 (437)
T 2y27_A 342 NVFPTQIEEQLLKQ-------RALAP-HYQIVLTKEGPLDVLTLNVEPCPE---TAPDTAAIQVAKQALAYDIK-SLI-- 407 (437)
T ss_dssp EECHHHHHHHHTTC-------TTBCS-CCEEEEEEETTEEEEEEEECBCTT---TTTCHHHHHHHHHHHHHHHH-HHH--
T ss_pred EECHHHHHHHHHhC-------cCcCc-cEEEEEeecCCCceEEEEEEECCC---ccchhhhHHHHHHHHHHHHH-Hhc--
Confidence 99999999888753 23211 233332221113466688887543 11111223344455555551 111
Q ss_pred hhcCCCCCcEEEEeCCCcHH
Q 009765 461 RDRGEISPLSVSIVKPGTFD 480 (526)
Q Consensus 461 R~~~~l~p~~v~~v~~g~f~ 480 (526)
-.|..|.+++.+.|+
T Consensus 408 -----~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 408 -----GVTAVINVLPVNGIE 422 (437)
T ss_dssp -----CCCEEEEECCTTCSC
T ss_pred -----CCceEEEEeCCCCcc
Confidence 145678888877776
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.70 E-value=1e-16 Score=165.99 Aligned_cols=294 Identities=13% Similarity=0.073 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHhc-c---CCchhhhhhcCCC-CC----CChhhHhhcCCCcchhhhhH-HHHHHhCCCCCCCCCCCccC
Q 009765 20 RHQLETLQSILERQ-S---GVRYLQPYLSGCC-AP----IDAATYKRTVPLSCYDDYAD-HINQLAGGDHGQNDQPLLAV 89 (526)
Q Consensus 20 ~~Q~~~L~~iL~~~-~---~t~ygr~~f~~i~-~~----~s~~df~~~vPl~~y~d~~~-~ier~~~Ge~~~~~~~~l~~ 89 (526)
..+++.|+++++++ + +++|||++|++.| .| ++++|++ ++|+++ ++++. +.+.+.. . . +..
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p------~-~-~~~ 90 (369)
T 3hgu_A 21 NDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP------Q-G-LPA 90 (369)
T ss_dssp TCHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC------T-T-SCT
T ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC------c-c-CCc
Confidence 45788999999986 6 9999998854433 22 7899995 799999 99865 3322211 0 1 245
Q ss_pred CCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-ceEEEEeccCCcc-----------c
Q 009765 90 DPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVN-KILFFIYSDNKTT-----------T 157 (526)
Q Consensus 90 ~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~-----------~ 157 (526)
+.+.+...||||| |+||-+.+|.+.+..+.. ++ ...... .++..+ +.+. +. +...+ .
T Consensus 91 ~~~a~i~~TSGTT-G~PKgv~~t~~~~~~~~~----~~--~~~~~~--~~~~~~d~~l~-~~-p~g~~~~g~~~~~~~~~ 159 (369)
T 3hgu_A 91 DSHPQVYESGGTT-GAPKYVVAYDAWIEALIS----WR--MSGYQH--RPGRPSGNTLA-AI-PTGPHIVGAINKERALR 159 (369)
T ss_dssp TCCCEEEEECC----CCEEEEECHHHHHHHHH----HH--TTTTTT--STTCCCCEEEE-CS-CCTTCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCC-CCCCEEEECHHHHHHHHH----HH--HhhHHh--hCCCCcceEEE-ec-CCCchhhhHHHHHHHHH
Confidence 6677999999999 999999999987654322 11 000111 333333 3332 21 11011 0
Q ss_pred cCCceeee-ccchhHHHHHH------HHhhhHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhc
Q 009765 158 KAGFKVMA-ASAFPLQGLIG------AFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICG 230 (526)
Q Consensus 158 ~~gip~g~-~s~~~~~~ll~------~~~~l~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~ 230 (526)
.+++-+-. .+....+.++. .-...+..++++++.|++.. ++. +.++|+ .+..|.+...
T Consensus 160 ~G~~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~t~---------l~~~Ps--~~~~l~~~~~ 224 (369)
T 3hgu_A 160 LGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQD----IRF---------LVTTPP--VLRELLKRPE 224 (369)
T ss_dssp TTSCEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC----EEE---------EEECHH--HHHHHTTCHH
T ss_pred cCCEEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCC----CCE---------EEeCHH--HHHHHHhhhh
Confidence 11111100 00000011111 00112333445566777776 222 444554 4433332211
Q ss_pred cCCCCCcccccCCCCceEEEEecCc--h-hhhHHHHH-HHhCCCCeeccccccCCce-eeeecCCCCCCC-Ccceec---
Q 009765 231 ESNWSGIFSKLWPNVRYIKCVTTGS--M-SQYCSKIK-YYAGEVPVLGGDYFASECY-VGINLDIAQPPQ-TTRFVM--- 301 (526)
Q Consensus 231 ~~g~~g~~~~lWP~L~~i~~~~~G~--~-~~y~~~l~-~~~g~v~v~~~~Y~aSEg~-i~i~~~~~~~~~-~~~~~l--- 301 (526)
. .....++++ .+++|| + ...+++++ +.||+++++ +.||.||+. ++. .|+.. .|..+.
T Consensus 225 ~------~~~~~~~lr---~i~~gGe~l~~~~~~~~~~~~~p~~~v~-~~YG~TE~~~~~~----~~~~~~~G~~~~~~~ 290 (369)
T 3hgu_A 225 V------VLQMKQSLA---QITLGGTELNLDEIKFIASEILPDCEFS-ASYGSTSALGVSR----SLLITSESQQVIYDS 290 (369)
T ss_dssp H------HHHHHHHCS---EEEEESSCCCHHHHHHHHHHTCTTSEEE-EEEEEGGGTEEEE----ECCBCTTCSSCEEEC
T ss_pred h------hccccCCee---EEEECCccCCHHHHHHHHHHhCCCcEEE-cccCchhhhccee----ccccccCCCcccccC
Confidence 1 111224677 334443 2 46678888 889789999 999999974 332 23221 122211
Q ss_pred -CCCceEEEeeeCCCCCccccCCceeccccccCCceEEEEEccCCC---eecceeCCEEEEeeecCCCC-----EEEEee
Q 009765 302 -LPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG---FYRYRLGDIVKVVDFYNSSP-----QVEFVM 372 (526)
Q Consensus 302 -~~~~~f~EFip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~~G---L~RYr~GDvV~v~g~~~~~P-----~i~f~g 372 (526)
.++ ..++.+++++ + ..|..|+.+||+||++.. +.||++||+.+.....+.-+ -++.++
T Consensus 291 ~~~~-~~v~ivD~~~-------g-----~~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~ 357 (369)
T 3hgu_A 291 FSPF-ITYDVVDSIT-------A-----QTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLK 357 (369)
T ss_dssp CTTT-EEEEEECTTT-------C-----SBCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC
T ss_pred CCCC-eEEEEECCCC-------C-----cCCCCCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcccccceecc
Confidence 333 6788888643 2 245699999999998633 89999999998876533222 345566
Q ss_pred eCCC
Q 009765 373 RAPK 376 (526)
Q Consensus 373 R~~~ 376 (526)
|.+.
T Consensus 358 ~~~~ 361 (369)
T 3hgu_A 358 ISEG 361 (369)
T ss_dssp ----
T ss_pred ccCC
Confidence 6543
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.45 E-value=8.2e-12 Score=137.31 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCCCC-cceecCCCceEEEeeeCCCCC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT-TRFVMLPTAAYFEFLPFDMEK 317 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~-~~~~l~~~~~f~EFip~~~~~ 317 (526)
+++|+ .+++||. ....+++++.+ +++++ ++||.||+.+.+...+..+... ......|+ .-++.++++.
T Consensus 340 l~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~-~~v~ivd~~g-- 411 (580)
T 3etc_A 340 FSTLK---YAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGKPTPG-YKIELMDRDG-- 411 (580)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBEECTT-CEEEEECTTS--
T ss_pred Cccce---EEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCccccCCCC-CEEEEECCCC--
Confidence 45777 4444442 35557777777 48999 9999999844332212111111 12223344 3467777542
Q ss_pred ccccCCceeccccccCCceEEEEEccCC----Ceec-----------------ceeCCEEEEeeecCCCCEEEEeeeCCC
Q 009765 318 NEAVGEETVDFSGVEIGKMYEVVVTTYR----GFYR-----------------YRLGDIVKVVDFYNSSPQVEFVMRAPK 376 (526)
Q Consensus 318 ~~~~~~~~l~l~ele~G~~yelVvTt~~----GL~R-----------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~ 376 (526)
.++.+|+.+||+|++.. ++.+ |+|||++++. ..-.+.|+||.++
T Consensus 412 -----------~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d----~dG~l~~~GR~dd 476 (580)
T 3etc_A 412 -----------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMD----EDGYLWFVGRADD 476 (580)
T ss_dssp -----------CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEEC----TTSCEEEEEESSS
T ss_pred -----------CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEEC----CCCcEEEEecCCC
Confidence 34678999999998642 2333 9999999986 3457999999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 009765 377 ---SSFEIISERDLMSAMES 393 (526)
Q Consensus 377 ---i~gEk~~e~~v~~av~~ 393 (526)
+.|+++.+.+|+++|.+
T Consensus 477 ~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 477 IIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp CEEETTEEECHHHHHHHHTT
T ss_pred EEEECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 9
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.40 E-value=3.8e-11 Score=129.53 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=134.7
Q ss_pred cCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCceeeecc
Q 009765 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAAS 167 (526)
Q Consensus 88 ~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip~g~~s 167 (526)
.++.+.+...||||| |+||-+..|.+.+..+.. +. .. . .++..+..+. .. .+..... |+
T Consensus 141 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~~~~----~~----~~-~--~~~~~~d~~l-~~-~p~~~~~-~~------ 199 (511)
T 3e7w_A 141 KEHETFYIIYTSGST-GNPKGVQISAANLQSFTD----WI----CA-D--FPVSGGKIFL-NQ-APFSFDL-SV------ 199 (511)
T ss_dssp CTTSEEEEEEECCTT-SSCEEEEEEHHHHHHHHH----HH----HH-H--STTTTTCEEE-EC-SCTTSTH-HH------
T ss_pred CCCCeEEEEECCCCC-CCCCEEEEcHHHHHHHHH----HH----HH-h--cCCCccceEE-Ee-CCccHHH-HH------
Confidence 445566889999999 999999999887644222 21 11 1 2333232222 21 1211110 00
Q ss_pred chhHHHHHHHHh------h----hHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCc
Q 009765 168 AFPLQGLIGAFS------F----FESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGI 237 (526)
Q Consensus 168 ~~~~~~ll~~~~------~----l~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~ 237 (526)
..++..+. + ...+.+.+++.|++..++. +.+.|+ .+..|.... . .
T Consensus 200 ----~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~-------------~~~~P~--~~~~l~~~~---~---~ 254 (511)
T 3e7w_A 200 ----MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV-------------WTSTPS--FVQMCLMDP---G---F 254 (511)
T ss_dssp ----HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE-------------EEECHH--HHHHHHTST---T---C
T ss_pred ----HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE-------------EEecHH--HHHHHHhcc---c---c
Confidence 00111110 0 0123455667777666332 333443 333332211 1 2
Q ss_pred ccccCCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCceee-ee--cCC----CCCCCCcceecCCCceEE
Q 009765 238 FSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVG-IN--LDI----AQPPQTTRFVMLPTAAYF 308 (526)
Q Consensus 238 ~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~-i~--~~~----~~~~~~~~~~l~~~~~f~ 308 (526)
.....+.++ .++.+|. . ....+++++.|++++++ +.||.||+.+. .. ... ..... ......++ .-+
T Consensus 255 ~~~~~~~l~--~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~ 329 (511)
T 3e7w_A 255 SQDLLPHAD--TFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESL-PVGFAKPD-MNI 329 (511)
T ss_dssp STTTCTTCC--EEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSC-CCBEECTT-CEE
T ss_pred ccccCCccc--EEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcC-CCcceeCC-CEE
Confidence 234456777 2334443 2 45667888889889999 99999997432 11 110 00000 01122333 345
Q ss_pred EeeeCCCCCccccCCceeccccccCCceEEEEEccC---CC-----------------eecceeCCEEEEeeecCCCCEE
Q 009765 309 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RG-----------------FYRYRLGDIVKVVDFYNSSPQV 368 (526)
Q Consensus 309 EFip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~G-----------------L~RYr~GDvV~v~g~~~~~P~i 368 (526)
+.++.+ + .++..|+.+||+|+.. .| -+.|+|||++++. .-.+
T Consensus 330 ~i~d~~--------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-----dG~l 391 (511)
T 3e7w_A 330 FIMDEE--------G-----QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-----DGQI 391 (511)
T ss_dssp EEECTT--------S-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-----TTEE
T ss_pred EEECCC--------C-----CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-----CCeE
Confidence 666644 2 3467899999999853 22 2359999999873 2578
Q ss_pred EEeeeCCC---cceeecCHHHHHHHHHHH
Q 009765 369 EFVMRAPK---SSFEIISERDLMSAMESF 394 (526)
Q Consensus 369 ~f~gR~~~---i~gEk~~e~~v~~av~~~ 394 (526)
.|+||.++ +.|+++...+|++++.+.
T Consensus 392 ~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 392 FCQGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp EEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred EEEccccCEEEECCEEeCHHHHHHHHHhC
Confidence 99999999 889999999999988863
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.38 E-value=3e-11 Score=130.23 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=87.5
Q ss_pred ccCCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCCCCc-ceecCCCceEEEeeeCCC
Q 009765 240 KLWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDM 315 (526)
Q Consensus 240 ~lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~-~~~l~~~~~f~EFip~~~ 315 (526)
...++++ .+++||. ....+++++.+| ++++ +.||.||+.+............+ .....++ .-++.+++++
T Consensus 265 ~~~~~lr---~~~~gg~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d~~~ 338 (503)
T 4fuq_A 265 ETTGHMR---LFISGSAPLLADTHREWSAKTG-HAVL-ERYGMTETNMNTSNPYDGDRVPGAVGPALPG-VSARVTDPET 338 (503)
T ss_dssp TTTTTCC---EEEECSSCCCHHHHHHHHHHHS-CCEE-ECCEETTTEECBCCCSSSCCCTTEEEEBCTT-CEEEEECTTT
T ss_pred cchhhcE---EEEECCCCCCHHHHHHHHHHhC-CCcc-ceEcccccCcccccCCCCCCcCCccccCCCC-eEEEEEECCC
Confidence 3456777 4455543 355567777774 8999 99999998543211111110001 1222333 4567777543
Q ss_pred CCccccCCceeccccccCCceEEEEEccC---CCeec--------------ceeCCEEEEeeecCCCCEEEEeeeCCC--
Q 009765 316 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK-- 376 (526)
Q Consensus 316 ~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~R--------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~-- 376 (526)
+ .++..|+.+||+|+.. .|.|. |+|||++++. ..-.+.|+||.++
T Consensus 339 -------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~dd~i 402 (503)
T 4fuq_A 339 -------G-----KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID----ERGYVHILGRGKDLV 402 (503)
T ss_dssp -------C-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC----TTCEEEECCSSTTCE
T ss_pred -------C-----CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc----CCCcEEEEecCCCEE
Confidence 2 3467899999999863 34432 9999999986 3568999999998
Q ss_pred -cceeecCHHHHHHHHHH
Q 009765 377 -SSFEIISERDLMSAMES 393 (526)
Q Consensus 377 -i~gEk~~e~~v~~av~~ 393 (526)
++|+++...+|+++|.+
T Consensus 403 k~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 403 ITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp EETTEEECHHHHHHHHHT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 11
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.37 E-value=1.8e-12 Score=139.71 Aligned_cols=235 Identities=12% Similarity=0.024 Sum_probs=118.1
Q ss_pred cCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CceEEEEeccCCccccCCceeeec
Q 009765 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDV-NKILFFIYSDNKTTTKAGFKVMAA 166 (526)
Q Consensus 88 ~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~gip~g~~ 166 (526)
.++.+.+...||||| |+||-+..|.+.+..... +. .. . .++.. .+.+. . .+..+.
T Consensus 158 ~~~d~a~i~~TSGTT-G~PKgV~~sh~~l~~~~~----~~----~~-~--~~~~~~d~~l~-~--~p~~~~--------- 213 (509)
T 3ivr_A 158 GAADGFVIIHTAAVG-GRPRGALISQGNLLIAQS----SL----VD-A--WRLTEADVNLG-M--LPLFHV--------- 213 (509)
T ss_dssp CTTSEEEEEEEEC---CCEEEEEEEHHHHHHHHH----HH----HH-H--TTCCTTCEEEE-C--SCTTSH---------
T ss_pred CccccEEEEeCCCCC-CCCcEEEEehHHHHHHHH----HH----HH-h--hCCCCCcEEEE-e--CCCcch---------
Confidence 345566899999999 999999999987644222 21 11 1 23332 33222 1 111111
Q ss_pred cchhHHHHHHHHh------hhHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcccc
Q 009765 167 SAFPLQGLIGAFS------FFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSK 240 (526)
Q Consensus 167 s~~~~~~ll~~~~------~l~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~ 240 (526)
.+... .+...+. ....+-+.+++.|++..++. +.+.|+ .+..|.+.... .
T Consensus 214 ~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~-------------~~~~p~--~~~~l~~~~~~--------~ 269 (509)
T 3ivr_A 214 TGLGL-MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTV-------------MAEFAP--MLGNILDQAAP--------A 269 (509)
T ss_dssp HHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCE-------------EEEETT--HHHHHHHHCCG--------G
T ss_pred hHHHH-HHHHHHhCCcEEEecccCHHHHHHHHHHHCCcE-------------EEecHH--HHHHHHhcccc--------c
Confidence 00000 0000000 00113455666666666332 444565 44444443321 1
Q ss_pred cCCCCceEEEEecCchhhhHHHHHHHhCCCCeeccccccCCcee-e-eecCCCCCCCCcceecCCCceEEEeeeCCCCCc
Q 009765 241 LWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV-G-INLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 318 (526)
Q Consensus 241 lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~v~~~~Y~aSEg~i-~-i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~ 318 (526)
-.+.++ .+.+|+.....+++++.+++++++ +.||.||+.. + .......+. ......++ .-++.++.+.
T Consensus 270 ~l~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~--~~G~p~~~-~~~~i~d~~~--- 339 (509)
T 3ivr_A 270 QLASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPK--SAGRPLFW-RTVAVVDAED--- 339 (509)
T ss_dssp GGTTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTT--SCCEECTT-CEEEEECTTS---
T ss_pred chhhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCC--cccccCCC-cEEEEECCCC---
Confidence 224666 445555557778888888889999 9999999833 2 221111111 11222333 3466776542
Q ss_pred cccCCceeccccccCCceEEEEEccC---CCeec-------------ceeCCEEEEeeecCCCCEEEEeeeC--CC---c
Q 009765 319 EAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRA--PK---S 377 (526)
Q Consensus 319 ~~~~~~~l~l~ele~G~~yelVvTt~---~GL~R-------------Yr~GDvV~v~g~~~~~P~i~f~gR~--~~---i 377 (526)
.++..|+.+||+|+.. .|.|+ |+|||++++. ....+.|+||. ++ +
T Consensus 340 ----------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~----~dG~l~~~GR~d~~d~ik~ 405 (509)
T 3ivr_A 340 ----------RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD----ADGYLFYAGRAPEKELIKT 405 (509)
T ss_dssp ----------CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC----TTSCEEEEEEC--------
T ss_pred ----------CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC----CCceEEEeCCCCcceeEEE
Confidence 3467899999999874 45554 9999999986 34679999998 65 7
Q ss_pred ceeecCHHHHHHHHHHH
Q 009765 378 SFEIISERDLMSAMESF 394 (526)
Q Consensus 378 ~gEk~~e~~v~~av~~~ 394 (526)
+|+++...+|+.++.+.
T Consensus 406 ~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 406 GGENVYPAEVEGALKQH 422 (509)
T ss_dssp -----------------
T ss_pred CCEEECHHHHHHHHHhC
Confidence 89999999999988764
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.36 E-value=5.2e-11 Score=132.68 Aligned_cols=228 Identities=14% Similarity=0.076 Sum_probs=122.1
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhC--CCCeeccccccCCcee--eeecCCCCCCCCc-ceecCCCceEEEeeeC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAG--EVPVLGGDYFASECYV--GINLDIAQPPQTT-RFVMLPTAAYFEFLPF 313 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g--~v~v~~~~Y~aSEg~i--~i~~~~~~~~~~~-~~~l~~~~~f~EFip~ 313 (526)
.++|+ .+.+||. ....+.+.+.+| +++++ +.||.||+.. ..+.....+...+ .....++ .-+..++.
T Consensus 377 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g-~~v~i~d~ 451 (652)
T 1pg4_A 377 RSSLR---ILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATRPFFG-VQPALVDN 451 (652)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTT-CCEEEECT
T ss_pred cCceE---EEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCccccCcCC-CeEEEECC
Confidence 35777 3444442 344567777775 38999 9999999743 2211000000001 1112233 23455554
Q ss_pred CCCCccccCCceeccccccCCceEEEEEccC-----CCee----------------cceeCCEEEEeeecCCCCEEEEee
Q 009765 314 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFVM 372 (526)
Q Consensus 314 ~~~~~~~~~~~~l~l~ele~G~~yelVvTt~-----~GL~----------------RYr~GDvV~v~g~~~~~P~i~f~g 372 (526)
+ + .++..|+.+||+|+.. .|.| -|+|||++++. ..-.+.|+|
T Consensus 452 ~--------g-----~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d----~dG~l~i~G 514 (652)
T 1pg4_A 452 E--------G-----HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD----EDGYYWITG 514 (652)
T ss_dssp T--------C-----CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC----TTSCEEEEE
T ss_pred C--------C-----CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEc----CCCcEEEEe
Confidence 3 2 3456899999999872 2222 29999999987 345789999
Q ss_pred eCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee-cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHH
Q 009765 373 RAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSS 448 (526)
Q Consensus 373 R~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~-~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~ 448 (526)
|.|+ +.|+++...+|+++|.+. .+ +.+.+|+. +........+.||.+..+ ...+....+++.+.
T Consensus 515 R~dd~Ik~~G~rI~~~eIE~~l~~~-------p~--V~ea~Vvg~~~~~~g~~l~a~Vv~~~~---~~~~~~~~~~l~~~ 582 (652)
T 1pg4_A 515 RVDDVLNVSGHRLGTAEIESALVAH-------PK--IAEAAVVGIPHAIKGQAIYAYVTLNHG---EEPSPELYAEVRNW 582 (652)
T ss_dssp ESSSEEEETTEEEEHHHHHHHHHHS-------TT--EEEEEEEEEEETTTEEEEEEEEEECTT---CCCCHHHHHHHHHH
T ss_pred cCCCEEEECCEEECHHHHHHHHHhC-------CC--cceEEEEEEEcCCCCeEEEEEEEECCC---CCCCHHHHHHHHHH
Confidence 9998 889999999999998753 23 45655442 111112244567877543 11222223334444
Q ss_pred HHHHhChhHHhhhhcCCCCCcEEEEeCC------Cc--HHHHHHHHHHcCCCCCCCCCCcccCCHhHHHHHhccc
Q 009765 449 LEDAFGSIYKVQRDRGEISPLSVSIVKP------GT--FDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCS 515 (526)
Q Consensus 449 ld~~Ln~~Y~~~R~~~~l~p~~v~~v~~------g~--f~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~ 515 (526)
+.+.|.+ ...|-.|.+|+. |- -..+++. ..+. ..+++.+-.+.|++.++.+.+.+
T Consensus 583 l~~~l~~---------~~~P~~i~~v~~lP~T~sGKi~R~~L~~~--~~~~-~~~~~~~~~l~~p~~~~~~~~~~ 645 (652)
T 1pg4_A 583 VRKEIGP---------LATPDVLHWTDSLPKTRSGKIMRRILRKI--AAGD-TSNLGDTSTLADPGVVEKLLEEK 645 (652)
T ss_dssp HHHHTCG---------GGCCSEEEECSCCCBCTTSCBCHHHHHHH--HHTC-----------CCTTHHHHHHHHH
T ss_pred HHHhCCC---------CcCCeEEEEcCCCCCCCCccchHHHHHHH--HhCC-CCCCCCccccCCHHHHHHHHHHh
Confidence 4444411 234666776642 32 1223332 1221 13566677788999888886643
No 13
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.36 E-value=2.2e-11 Score=131.50 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=126.9
Q ss_pred cCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCceeeecc
Q 009765 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAAS 167 (526)
Q Consensus 88 ~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip~g~~s 167 (526)
.++.+.+...||||| |+||-+..|.+.+..+.. ++ .... ..++..+..+. . ..+.... .
T Consensus 143 ~~~d~a~i~~TSGTT-G~PKgV~~sh~~l~~~~~----~~----~~~~-~~~~~~~~~~l-~-~~~~~~~---------~ 201 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTT-GQPKGVQISHDNLLSFTN----WM----IEDA-AFDVPKQPQML-A-QPPYSFD---------L 201 (521)
T ss_dssp CTTSEEEEEECCC----CCCEEEEEHHHHHHHHH----HH----HHCT-TTCCCSSCEEE-C-CSCTTSG---------G
T ss_pred CCCCcEEEEEcCCCC-CCCCEEEEehHHHHHHHH----HH----hhcc-ccCCCCCCeEE-e-cCCccHH---------H
Confidence 455667899999999 999999999887643211 21 1110 02222222221 1 1111110 0
Q ss_pred chhHHHHHHHH----------hhhHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCc
Q 009765 168 AFPLQGLIGAF----------SFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGI 237 (526)
Q Consensus 168 ~~~~~~ll~~~----------~~l~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~ 237 (526)
+ ...++..+ .....+.+++++.|.+..++. +.+.|+ .+..|..... .
T Consensus 202 ~--~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~-------------~~~~P~--~~~~l~~~~~------~ 258 (521)
T 3l8c_A 202 S--VMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGI-------------WTSTPS--FADMAMLSDD------F 258 (521)
T ss_dssp G--HHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSE-------------EEECHH--HHHHHHTSTT------C
T ss_pred H--HHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcE-------------EEeCCC--HHHHHhhhhc------c
Confidence 0 00011111 011235566777777766332 333443 3333322111 1
Q ss_pred ccccCCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCceeeee---cCCC----CCCCCcceecCCCceEE
Q 009765 238 FSKLWPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGIN---LDIA----QPPQTTRFVMLPTAAYF 308 (526)
Q Consensus 238 ~~~lWP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~---~~~~----~~~~~~~~~l~~~~~f~ 308 (526)
...-.|+++ ..+++|. . ....+++.+.+++++++ +.||+||+.+.+. .... .... ......++ .-.
T Consensus 259 ~~~~~~~lr--~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~vG~p~~~-~~~ 333 (521)
T 3l8c_A 259 CQAKMPALT--HFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRL-PIGYPKPD-SPT 333 (521)
T ss_dssp STTTCTTCC--EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSC-EEEEECTT-SCE
T ss_pred ccccCccce--EEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcc-ccccccCC-CEE
Confidence 223346777 2334443 2 45567777888889999 9999999743221 1000 0000 01112233 235
Q ss_pred EeeeCCCCCccccCCceeccccccCCceEEEEEccC---CCee-----------------cceeCCEEEEeeecCCCCEE
Q 009765 309 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQV 368 (526)
Q Consensus 309 EFip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~-----------------RYr~GDvV~v~g~~~~~P~i 368 (526)
+.++.+ + .++..|+.+||+|+.. .|.| -|+|||++++.. .-.+
T Consensus 334 ~i~d~~--------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG~l 396 (521)
T 3l8c_A 334 YIIDED--------G-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DNIL 396 (521)
T ss_dssp EEECTT--------S-----CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SSCE
T ss_pred EEECCC--------c-----CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CCeE
Confidence 666643 2 3467899999999873 3433 399999999863 4579
Q ss_pred EEeeeCCC---cceeecCHHHHHHHHHH
Q 009765 369 EFVMRAPK---SSFEIISERDLMSAMES 393 (526)
Q Consensus 369 ~f~gR~~~---i~gEk~~e~~v~~av~~ 393 (526)
.|+||.++ +.|++++..+|+++|.+
T Consensus 397 ~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 397 LYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp EEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred EEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 99999998 88999999999988875
No 14
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.35 E-value=2.1e-11 Score=131.68 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=92.9
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCCCCc-ceecCCCceEEEeeeCCCCC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDMEK 317 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~-~~~l~~~~~f~EFip~~~~~ 317 (526)
+++++ .+++||. ....+++++.+ +++++ +.||.||+.+........+...+ .....++ .-++.++.+
T Consensus 271 l~~lr---~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~-~~~~i~d~~--- 341 (505)
T 3nyq_A 271 LAGAR---LLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGVPLPG-VELRLVEED--- 341 (505)
T ss_dssp HHHCS---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEECTT-CEEEEC------
T ss_pred cccce---EEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCcccCCCC-CEEEEECCC---
Confidence 34667 3444543 34556777777 58999 99999998554322221111101 1222333 346666644
Q ss_pred ccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCC-C---
Q 009765 318 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAP-K--- 376 (526)
Q Consensus 318 ~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~-~--- 376 (526)
+..+. .+..|+.+||+|+.. .|.| -|||||++++. ..-.+.|+||.+ +
T Consensus 342 -----g~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~----~dG~l~~~GR~~d~~ik 410 (505)
T 3nyq_A 342 -----GTPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD----PDGYVRIVGRKATDLIK 410 (505)
T ss_dssp -------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC----TTSCEEEEEESSCCCEE
T ss_pred -----CCCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC----CCccEEEeCCccCceEE
Confidence 22221 233489999999863 3333 29999999986 346799999974 5
Q ss_pred cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee-cCCCCCceEEEEEEee
Q 009765 377 SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIR 429 (526)
Q Consensus 377 i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~-~~~~~~~~y~l~vE~~ 429 (526)
+.|+++...+|+++|.+. .+ +.+.+++. +........+.||...
T Consensus 411 ~~G~~v~~~eIE~~l~~~-------p~--V~~a~Vv~~~~~~~g~~l~a~vv~~ 455 (505)
T 3nyq_A 411 SGGYKIGAGEIENALLEH-------PE--VREAAVTGEPDPDLGERIVAWIVPA 455 (505)
T ss_dssp ETTEEECHHHHHHHHTTS-------TT--EEEEEEEEEEETTTEEEEEEEEEES
T ss_pred eCCEEECHHHHHHHHHHC-------cC--ccEEEEEeeECCCCCcEEEEEEEEC
Confidence 889999999999888753 34 44555442 2111123445667664
No 15
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.35 E-value=2.8e-11 Score=131.96 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=87.6
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCCCCc-ceecCCCceEEEeeeCCCCC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDMEK 317 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~-~~~l~~~~~f~EFip~~~~~ 317 (526)
+++|+ .+++||. ...++++++.+++++++ +.||.||+...+...+......+ .....++ .-++.+++++
T Consensus 308 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~-- 380 (548)
T 2d1s_A 308 LSNLV---EIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGKVVPL-FKAKVIDLDT-- 380 (548)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBEECTT-CEEEEECTTT--
T ss_pred cccee---EEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCccCCC-ceEEEEeCCc--
Confidence 45777 3344442 45667888888889999 99999997432211111111001 1222333 4567777543
Q ss_pred ccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCCC---c
Q 009765 318 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 377 (526)
Q Consensus 318 ~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i 377 (526)
+ .++.+|+.+||+|+.. .|.| .|+|||++++.. .-.+.|+||.++ +
T Consensus 381 -----~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~~d~ik~ 446 (548)
T 2d1s_A 381 -----K-----KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIVDRLKSLIKY 446 (548)
T ss_dssp -----C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEEEEGGGCBCB
T ss_pred -----C-----ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEeccccceEEE
Confidence 2 2456899999999873 2222 499999999862 357999999998 8
Q ss_pred ceeecCHHHHHHHHHH
Q 009765 378 SFEIISERDLMSAMES 393 (526)
Q Consensus 378 ~gEk~~e~~v~~av~~ 393 (526)
.|+++...+|++++.+
T Consensus 447 ~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 447 KGYQVPPAELESVLLQ 462 (548)
T ss_dssp TTCCBCHHHHHHHHHT
T ss_pred CCEEECHHHHHHHHHh
Confidence 8999999999988875
No 16
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.35 E-value=2.5e-11 Score=131.78 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=88.0
Q ss_pred cCCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCcee--eeecC----CC-CCCCCcceecCCCceEEEe
Q 009765 241 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLD----IA-QPPQTTRFVMLPTAAYFEF 310 (526)
Q Consensus 241 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i--~i~~~----~~-~~~~~~~~~l~~~~~f~EF 310 (526)
-.++|+ .+++||. ....+++++.+++++++ +.||.||+.. +.... +. ..+. ......++ .-++.
T Consensus 295 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~~i 368 (536)
T 3ni2_A 295 DLSSLR---MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPG-ACGTVVRN-AEMKI 368 (536)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTT-CCCEECSS-CEEEE
T ss_pred CCccce---EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCC-CeeEeCCC-cEEEE
Confidence 346788 3344432 45567888888889999 9999999842 22211 00 0011 11222333 34677
Q ss_pred eeCCCCCccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeee
Q 009765 311 LPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMR 373 (526)
Q Consensus 311 ip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR 373 (526)
+++++ + .++..|+.+||+|+.. .|.| .|||||++++. ..-.+.|+||
T Consensus 369 ~d~~~-------~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~----~dG~l~~~GR 432 (536)
T 3ni2_A 369 VDPET-------G-----ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID----DDDELFIVDR 432 (536)
T ss_dssp ECTTT-------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEEEEE
T ss_pred EeCCC-------C-----cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEc----CCceEEEEec
Confidence 77553 2 3456899999999863 2332 39999999986 3468999999
Q ss_pred CCC---cceeecCHHHHHHHHHH
Q 009765 374 APK---SSFEIISERDLMSAMES 393 (526)
Q Consensus 374 ~~~---i~gEk~~e~~v~~av~~ 393 (526)
.++ +.|+++...+|++++.+
T Consensus 433 ~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 433 LKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp CSCCEEETTEEECHHHHHHHHHT
T ss_pred ccceEEECCEEECHHHHHHHHHh
Confidence 998 88999999999988875
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.34 E-value=2e-11 Score=132.21 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=93.7
Q ss_pred CCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCc-eeeeecCCC-CCCCCcceecCCCceEEEeeeCCCCCc
Q 009765 244 NVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASEC-YVGINLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEKN 318 (526)
Q Consensus 244 ~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg-~i~i~~~~~-~~~~~~~~~l~~~~~f~EFip~~~~~~ 318 (526)
.++ .+++||. ...++++++.+ +++++ ++||.||+ .+.+...+. +... ......++ .-++.++.+
T Consensus 301 ~lr---~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~-~~G~p~~~-~~~~i~d~~---- 369 (529)
T 2v7b_A 301 AIR---ICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYG-TTGRPVPG-YEIELRDEA---- 369 (529)
T ss_dssp CCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTT-SCCEECTT-CEEEEECTT----
T ss_pred ceE---EEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccC-CcccCCCC-CEEEEECCC----
Confidence 666 3344432 45567788878 59999 99999997 333321111 1111 11223333 456777743
Q ss_pred cccCCceeccccccCCceEEEEEccC---CCeec-------------ceeCCEEEEeeecCCCCEEEEeeeCCC---cce
Q 009765 319 EAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSF 379 (526)
Q Consensus 319 ~~~~~~~l~l~ele~G~~yelVvTt~---~GL~R-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---i~g 379 (526)
+ .++..|+.+||+|+.. .|.|+ |+|||++++. ..-.+.|+||.++ +.|
T Consensus 370 ----g-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G 436 (529)
T 2v7b_A 370 ----G-----HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL----PNGCYVYAGRSDDMLKVSG 436 (529)
T ss_dssp ----S-----CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC----TTSCEEEEEEGGGCBC---
T ss_pred ----C-----CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC----CCccEEEeCccCCeEEECC
Confidence 2 2466899999999874 45543 8999999887 3457999999998 789
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeec
Q 009765 380 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE 430 (526)
Q Consensus 380 Ek~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~ 430 (526)
+++...+|++++.+. .+ +.+.+++..........+.+|....
T Consensus 437 ~~v~p~eIE~~l~~~-------p~--V~~~~vv~~~~~~~~~~~a~vv~~~ 478 (529)
T 2v7b_A 437 QYVSPVEVEMVLVQH-------DA--VLEAAVVGVDHGGLVKTRAFVVLKR 478 (529)
T ss_dssp -CBCHHHHHHHHTTS-------TT--EEEEEEEEEEETTEEEEEEEEEECT
T ss_pred EEECHHHHHHHHHhC-------CC--cceEEEEEecCCCceEEEEEEEecC
Confidence 999999999888753 33 4455544321111223446666643
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.34 E-value=6.7e-11 Score=127.51 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=129.2
Q ss_pred cCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCceeeecc
Q 009765 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAAS 167 (526)
Q Consensus 88 ~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip~g~~s 167 (526)
.++.+.+...||||| |.||-+..|.+.+..+.. +. .. . .++..+..+. . ..+..... |+.
T Consensus 142 ~~~d~a~i~~TSGTT-G~PKgv~~th~~l~~~~~----~~----~~-~--~~~~~~d~~l-~-~~p~~~~~-~~~----- 201 (512)
T 3fce_A 142 KGDENFYIIYTSGST-GNPKGVQITYNCLVSFTK----WA----VE-D--FNLQTGQVFL-N-QAPFSFDL-SVM----- 201 (512)
T ss_dssp CTTSEEEEEEECC-----CEEEEEEHHHHHHHHH----HH----HH-H--TTCCSSCEEE-E-CSCTTSGG-GHH-----
T ss_pred CCCCeEEEEECCCCC-CCCceEEEehHHHHHHHH----HH----HH-h--cCCCCCCEEE-E-eCCccHhH-HHH-----
Confidence 445566889999999 999999999887643221 21 11 1 2333332222 2 12221110 000
Q ss_pred chhHHHHHHHHh--h----hHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCccccc
Q 009765 168 AFPLQGLIGAFS--F----FESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKL 241 (526)
Q Consensus 168 ~~~~~~ll~~~~--~----l~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~l 241 (526)
. .+..++.... + ...+-+.+++.|++..++. +.+.|+ .+..|..... .....
T Consensus 202 ~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~-------------~~~~P~--~~~~l~~~~~------~~~~~ 259 (512)
T 3fce_A 202 D-IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV-------------WTSTPS--FAEMCLMEAS------FSESM 259 (512)
T ss_dssp H-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE-------------EEECHH--HHHHHTTSTT------CSTTT
T ss_pred H-HHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE-------------EEecHH--HHHHHHhhcc------ccchh
Confidence 0 0000000000 0 0123455666676666332 333443 4433322111 12234
Q ss_pred CCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCceeee---ecCCC----CCCCCcceecCCCceEEEeee
Q 009765 242 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIA----QPPQTTRFVMLPTAAYFEFLP 312 (526)
Q Consensus 242 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i---~~~~~----~~~~~~~~~l~~~~~f~EFip 312 (526)
.|+++ .++.+|. + ....+++.+.|++++++ +.||+||+.+.+ ..... .... ......++ .-+..++
T Consensus 260 ~~~lr--~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~~i~d 334 (512)
T 3fce_A 260 LPNMK--TFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSL-PVGYCKSD-CRLLIMK 334 (512)
T ss_dssp STTCC--EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSC-CCEEECTT-CEEEEEC
T ss_pred Ccccc--EEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCC-ccccccCC-cEEEEEC
Confidence 56788 2333443 2 45567888888889999 999999974322 11100 0000 01112233 3355555
Q ss_pred CCCCCccccCCceeccccccCCceEEEEEccC---CCee-----------------cceeCCEEEEeeecCCCCEEEEee
Q 009765 313 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQVEFVM 372 (526)
Q Consensus 313 ~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~-----------------RYr~GDvV~v~g~~~~~P~i~f~g 372 (526)
.+ + .++..|+.+||+|+.. .|.| -|+|||++++ . .-.+.|+|
T Consensus 335 ~~--------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~----dG~l~i~G 396 (512)
T 3fce_A 335 ED--------G-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E----NGLLFYNG 396 (512)
T ss_dssp SS--------S-----CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E----TTEEEEEE
T ss_pred CC--------C-----CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c----CCEEEEec
Confidence 33 2 2456899999999863 3433 3999999977 2 25799999
Q ss_pred eCCC---cceeecCHHHHHHHHHHH
Q 009765 373 RAPK---SSFEIISERDLMSAMESF 394 (526)
Q Consensus 373 R~~~---i~gEk~~e~~v~~av~~~ 394 (526)
|.++ +.|++++..+|++++.+.
T Consensus 397 R~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 397 RLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp EGGGCEEETTEEECHHHHHHHHHHS
T ss_pred ccCCEEEECCEEECHHHHHHHHHhC
Confidence 9998 889999999999988753
No 19
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.33 E-value=1.7e-10 Score=124.22 Aligned_cols=158 Identities=14% Similarity=0.077 Sum_probs=97.0
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCCCCcceecCCCceEEEeeeCCCCCc
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 318 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~ 318 (526)
+++|+ .+++||. ...++++++.+| ++++ +.||.||+.+.+...... .. ......++ .-+..++.+..
T Consensus 271 l~~lr---~~~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~-~~-~~g~p~~~-~~~~i~~~~~~-- 340 (504)
T 1t5h_X 271 LDSLR---HVTFAGATMPDAVLETVHQHLP-GEKV-NIYGTTEAMNSLYMRQPK-TG-TEMAPGFF-SEVRIVRIGGG-- 340 (504)
T ss_dssp CTTCC---EEEECCTTCCHHHHHHHHHHCC-SEEE-EEEEETTTEEEEEEESCS-SS-SEEBCCTT-CCEEEECTTSC--
T ss_pred Ccccc---EEEEcCCcCCHHHHHHHHHhcC-ccee-eeeccccccccccccCCC-CC-ccccCCCC-CceeEEeccCC--
Confidence 35777 4444443 355577878785 8888 999999984443221111 11 11111222 23455554320
Q ss_pred cccCCceeccccccCCceEEEEEc-cC---CCeec-------------ceeCCEEEEeeecCCCCEEEEeeeCCC---cc
Q 009765 319 EAVGEETVDFSGVEIGKMYEVVVT-TY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 378 (526)
Q Consensus 319 ~~~~~~~l~l~ele~G~~yelVvT-t~---~GL~R-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---i~ 378 (526)
.. ..+..|+.+||+|+ .. .|.|. |+|||++++.. .-.+.|+||.++ +.
T Consensus 341 ---~~-----~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ik~~ 408 (504)
T 1t5h_X 341 ---VD-----EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRVDDMIISG 408 (504)
T ss_dssp ---TT-----CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCEEET
T ss_pred ---CC-----CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcccCEEEEC
Confidence 01 34678999999998 32 46554 99999999873 357999999998 88
Q ss_pred eeecCHHHHHHHHHHHHHHhccccCceEEEEEEee-cCCCCCceEEEEEEeec
Q 009765 379 FEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIRE 430 (526)
Q Consensus 379 gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~-~~~~~~~~y~l~vE~~~ 430 (526)
|+++...+|++++.+. .+ +.+.+++. +........+.||+...
T Consensus 409 G~~v~p~eIE~~l~~~-------p~--V~~a~Vv~~~~~~~g~~~~a~vv~~~ 452 (504)
T 1t5h_X 409 GENIHPSEIERVLGTA-------PG--VTEVVVIGLADQRWGQSVTACVVPRL 452 (504)
T ss_dssp TEEECHHHHHHHHTTS-------TT--EEEEEEEEEECSSSSEEEEEEEEECT
T ss_pred CEEECHHHHHHHHHhC-------CC--cceEEEEEeecCCCCcEEEEEEEecC
Confidence 9999999999888743 34 44544442 22111234456777653
No 20
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.32 E-value=4e-11 Score=131.23 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=69.4
Q ss_pred ccccCCceEEEEEccC---CCe----------------------ecceeCCEEEEeeecCCCCEEEEeeeCCC---ccee
Q 009765 329 SGVEIGKMYEVVVTTY---RGF----------------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFE 380 (526)
Q Consensus 329 ~ele~G~~yelVvTt~---~GL----------------------~RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gE 380 (526)
.++..|+.+||+|+.. .|. ..|+|||++++.. -.+.|+||.++ +.|+
T Consensus 392 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----G~l~~~GR~dd~Ik~~G~ 466 (590)
T 3kxw_A 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----NELYVTGRIKDLIIIYGK 466 (590)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----TEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----CEEEEEcCccceEEECCE
Confidence 3567899999999873 232 2699999997761 36899999999 8899
Q ss_pred ecCHHHHHHHHHHHHHHhccccCceEEEEEEe--ecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHh
Q 009765 381 IISERDLMSAMESFQMMLRNVMAVEIVEFAGY--TNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF 453 (526)
Q Consensus 381 k~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~--~~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~ld~~L 453 (526)
++...+|+.++..... ++...+.+++ .+.. ....+++++...+ ..+....+++.+.+.+.|
T Consensus 467 ~v~p~eIE~~l~~~~~------~v~~~~~~v~~~~~~~--~~~~~~~v~~~~~----~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 467 NHYPQDIEFSLMHSPL------HHVLGKCAAFVIQEEH--EYKLTVMCEVKNR----FMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp TTHHHHHHHHHHHSGG------GGGEEEEEEEEEEETT--EEEEEEEEEESCT----TCCHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHhcCc------cccCccEEEEEecCCC--CceEEEEEEeccc----cccchhHHHHHHHHHHHH
Confidence 9999999999854322 3332233322 2222 3455678887543 112233444555555555
No 21
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.30 E-value=4.7e-11 Score=129.79 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCC----CCcceecCCCceEEEeeeCC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP----QTTRFVMLPTAAYFEFLPFD 314 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~----~~~~~~l~~~~~f~EFip~~ 314 (526)
+++|+ .+++||. ....+++++.+ +++++ +.||.||+.+.+... ..+. ..... ..++..-+..++.+
T Consensus 297 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~~~~~G~-p~~~~~~~~i~d~~ 369 (539)
T 1mdb_A 297 LSSLQ---VLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRL-DDPEEIIVNTQGK-PMSPYDESRVWDDH 369 (539)
T ss_dssp CTTCC---EEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCT-TSCHHHHHHCCCE-ESSTTCEEEEECTT
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCC-CCcHHhcCCCCCc-ccCCCceEEEECCC
Confidence 35778 3344432 34556777777 48998 999999986654321 1110 00112 22233335566543
Q ss_pred CCCccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCCC-
Q 009765 315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 376 (526)
Q Consensus 315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~- 376 (526)
+ .++..|+.+||+|+.. .|.| .|+|||++++.. .-.+.|+||.++
T Consensus 370 --------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 370 --------D-----RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVEGRAKDQ 432 (539)
T ss_dssp --------S-----CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEEGGGC
T ss_pred --------C-----CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEeccccce
Confidence 2 3467899999999864 3322 399999999873 457999999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 009765 377 --SSFEIISERDLMSAMES 393 (526)
Q Consensus 377 --i~gEk~~e~~v~~av~~ 393 (526)
++|+++...+|++++.+
T Consensus 433 ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 433 INRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp EECSSCEECHHHHHHHHTT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 88999999999988874
No 22
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.30 E-value=6.2e-11 Score=132.44 Aligned_cols=235 Identities=15% Similarity=0.123 Sum_probs=118.5
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhC--CCCeeccccccCCcee--eeecC-CCCC--CCCcceecCCCceEEEee
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAG--EVPVLGGDYFASECYV--GINLD-IAQP--PQTTRFVMLPTAAYFEFL 311 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g--~v~v~~~~Y~aSEg~i--~i~~~-~~~~--~~~~~~~l~~~~~f~EFi 311 (526)
.++|+ ++.+||. ....+.+++.+| +++++ +.||.||+.. ..+.. ...+ ++.... ..++ .-++.+
T Consensus 383 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g-~~v~i~ 456 (663)
T 1ry2_A 383 LKSLR---CLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFG-IDAVVL 456 (663)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTT-CCEEEE
T ss_pred cCceE---EEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCcccc-CcCC-CeEEEE
Confidence 35777 4455543 344567777775 39999 9999999742 22211 0011 111111 2233 235666
Q ss_pred eCCCCCccccCCceeccccccC-CceEEEEEccC-----CCee----------------cceeCCEEEEeeecCCCCEEE
Q 009765 312 PFDMEKNEAVGEETVDFSGVEI-GKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVE 369 (526)
Q Consensus 312 p~~~~~~~~~~~~~l~l~ele~-G~~yelVvTt~-----~GL~----------------RYr~GDvV~v~g~~~~~P~i~ 369 (526)
++++ ++ ++.. |+.+||+|+.. .|.| .|+|||++++.. .-.+.
T Consensus 457 d~~~-------g~-----~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~ 520 (663)
T 1ry2_A 457 DPNT-------GE-----ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----DGYIW 520 (663)
T ss_dssp CSSS-------TT-----CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----TCCEE
T ss_pred cCCC-------CC-----cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----CCCEE
Confidence 6422 22 3445 89999999873 2222 399999999873 35789
Q ss_pred EeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeec-CCCCCceEEEEEEeecCccccCCCHHHHHHH
Q 009765 370 FVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTKLRDSVAILRRC 445 (526)
Q Consensus 370 f~gR~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~-~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~ 445 (526)
|+||.|+ +.|+++...+|+++|.+. .+ +.+.+|+.. ........+.||.+.++........+.++++
T Consensus 521 i~GR~dd~Ik~~G~rI~~~eIE~~l~~~-------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l 591 (663)
T 1ry2_A 521 ILGRVDDVVNVSGHRLSTAEIEAAIIED-------PI--VAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDI 591 (663)
T ss_dssp ECSCTTSCBCSSSCCBCHHHHHHHHHSS-------TT--EEEEEEECCCCCTTSCCCEEEEEEC------------CCSH
T ss_pred EEeecCCEEEECCEEcCHHHHHHHHHhC-------CC--cceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHH
Confidence 9999998 889999999999988742 23 556555431 1111123456777653300000001100012
Q ss_pred HHHHHHHhChhHHhhhhcC-CCCCcEEEEeCC---CcHHHHHHHHHHcCCCCC--CCCCCcccCCHhHHHHHhc
Q 009765 446 CSSLEDAFGSIYKVQRDRG-EISPLSVSIVKP---GTFDRLLQVAIEKGAPAS--QYKPPKIVRNREIVEFMEG 513 (526)
Q Consensus 446 ~~~ld~~Ln~~Y~~~R~~~-~l~p~~v~~v~~---g~f~~~~~~~~~~G~~~~--Q~K~Pr~~~~~~~~~~l~~ 513 (526)
.++|.+.+ ..+ .+ ...|-.|.+|+. -.=.+.++..+.+=.... +++.+-.+.|++.++.+..
T Consensus 592 ~~~l~~~l-----~~~-L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~ 659 (663)
T 1ry2_A 592 KKHLVFTV-----RKD-IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLID 659 (663)
T ss_dssp HHHHHHHH-----HHH-TCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHHHHHHH
T ss_pred HHHHHHHH-----HHh-CCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHH
Confidence 23333333 111 22 346777777653 111122222332221222 6788888999999998865
No 23
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.30 E-value=2e-11 Score=132.93 Aligned_cols=242 Identities=14% Similarity=0.117 Sum_probs=122.5
Q ss_pred CCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCceeeeccch
Q 009765 90 DPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAF 169 (526)
Q Consensus 90 ~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip~g~~s~~ 169 (526)
+.+.+...||||| |+||-+..|.+.+..... ... .. .++..+..+. . ..+..+.. |+- ....
T Consensus 180 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~~~~~----~~~----~~---~~~~~~d~~~-~-~~p~~~~~-~~~--~~~~- 241 (549)
T 3g7s_A 180 EDVALIPYTGGTT-GMPKGVMLTHFNLAANAL----QLA----VA---TGLSHMDTIV-G-CMPMFHSA-EFG--LVNL- 241 (549)
T ss_dssp TSEEECCEECCCC-C-CEEEEEEHHHHHHHHH----HHH----HH---HCCCTTCEEE-C-CSCTTSHH-HHH--HHTT-
T ss_pred CCEEEEEECCCcc-CCCceEEEcHHHHHHHHH----HHH----HH---cCCCCCCEEE-E-eCcHHHHH-HHH--HHHH-
Confidence 6677899999999 999999999987654222 111 11 1222222111 1 11111110 000 0000
Q ss_pred hHHHHHHHHh--hh-HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcccccCCCCc
Q 009765 170 PLQGLIGAFS--FF-ESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVR 246 (526)
Q Consensus 170 ~~~~ll~~~~--~l-~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~lWP~L~ 246 (526)
.+..... +. ..+.+.+++.|++..++. +.+.|+ ....|.+.....+ ...-++.++
T Consensus 242 ---~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~-------------~~~~P~--~~~~l~~~~~~~~----~~~~~~~lr 299 (549)
T 3g7s_A 242 ---MVTVGNEYVVMGMFNQEMLAENIEKYKGTF-------------SWAVPP--ALNVLVNTLESSN----KTYDWSYLK 299 (549)
T ss_dssp ---HHHHCCEEEEESSCCHHHHHHHHHHTTCCE-------------EEECHH--HHHHHHHHHHHSC----CCCCCTTCC
T ss_pred ---HHhcCceEEEcCCCCHHHHHHHHHHhCCeE-------------EEeCCH--HHHHHHhhhhhhc----ccCCcccee
Confidence 0000000 00 012345566666666332 333443 4555555443321 112356777
Q ss_pred eEEEEecCch---hhhHHHHHHH----hCC--CCeeccccccCCceeeeecCCC-C--CCCCcceecCCCceEEEeeeCC
Q 009765 247 YIKCVTTGSM---SQYCSKIKYY----AGE--VPVLGGDYFASECYVGINLDIA-Q--PPQTTRFVMLPTAAYFEFLPFD 314 (526)
Q Consensus 247 ~i~~~~~G~~---~~y~~~l~~~----~g~--v~v~~~~Y~aSEg~i~i~~~~~-~--~~~~~~~~l~~~~~f~EFip~~ 314 (526)
.+.+||. ....+++.+. ++. ++++ +.||.||+...+...+. . ... ......++ .-++.++++
T Consensus 300 ---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~-~~G~p~~~-~~~~i~d~~ 373 (549)
T 3g7s_A 300 ---VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKST-TQGVPMSD-IELKVISLE 373 (549)
T ss_dssp ---EEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTT-SCCEECTT-CEEEEECSS
T ss_pred ---EEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCC-CccccCCC-CEEEEEeCC
Confidence 3444442 3444666655 543 8888 99999997432211111 0 010 11222333 456777754
Q ss_pred CCCccccCCceeccccccCCceEEEEEccC---CCee------------------cceeCCEEEEeeecCCCCEEEEeee
Q 009765 315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------------RYRLGDIVKVVDFYNSSPQVEFVMR 373 (526)
Q Consensus 315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~------------------RYr~GDvV~v~g~~~~~P~i~f~gR 373 (526)
+ + .++..|+.+||+|+.. .|.| .|||||++++. ..-.+.|+||
T Consensus 374 ~-------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~----~dG~l~~~GR 437 (549)
T 3g7s_A 374 D-------G-----RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFID----EEGFLHFQDR 437 (549)
T ss_dssp S-------C-----CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEEC----TTSCEEEEEE
T ss_pred C-------C-----cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEc----CCceEEEecc
Confidence 3 3 2456899999999863 2221 69999999986 3468999999
Q ss_pred CCC---cceeecCHHHHHHHHHH
Q 009765 374 APK---SSFEIISERDLMSAMES 393 (526)
Q Consensus 374 ~~~---i~gEk~~e~~v~~av~~ 393 (526)
.++ ++|+++...+|+++|.+
T Consensus 438 ~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 438 VKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp C------------CHHHHHHHTT
T ss_pred ccceEEECCEEECHHHHHHHHHh
Confidence 998 88999999999988875
No 24
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.30 E-value=5.9e-11 Score=130.16 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=84.3
Q ss_pred CCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCC--CCCCcceecCCCceEEEeeeCCCCC
Q 009765 242 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ--PPQTTRFVMLPTAAYFEFLPFDMEK 317 (526)
Q Consensus 242 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~--~~~~~~~~l~~~~~f~EFip~~~~~ 317 (526)
.++|+. ++.+|. + ...++++++.+ +++++ +.||.||+.+.+...+.. ....... ..++ .-++.++.+
T Consensus 321 ~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~--- 391 (570)
T 3c5e_A 321 FPHLQN--CVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASC-YDVQIIDDK--- 391 (570)
T ss_dssp CTTCCE--EEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTT-CCEEEECTT---
T ss_pred cccceE--EEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCC-ceEEEECCC---
Confidence 467773 334443 2 45557777777 58999 999999985433222111 1111111 2233 345666643
Q ss_pred ccccCCceeccccccCCceEEEEEc-----c---CCCee-------------cceeCCEEEEeeecCCCCEEEEeeeCCC
Q 009765 318 NEAVGEETVDFSGVEIGKMYEVVVT-----T---YRGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 376 (526)
Q Consensus 318 ~~~~~~~~l~l~ele~G~~yelVvT-----t---~~GL~-------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~ 376 (526)
+ .++..|+.+||+|+ . ..|.| .|+|||++++. ..-.+.|+||.++
T Consensus 392 -----g-----~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d----~dG~l~~~GR~dd 457 (570)
T 3c5e_A 392 -----G-----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKD----EDGYFQFMGRADD 457 (570)
T ss_dssp -----S-----CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEEC----TTSCEEEEEEGGG
T ss_pred -----C-----CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEc----CCceEEEEecCCC
Confidence 2 24678999999998 2 12333 29999999886 3457899999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 009765 377 ---SSFEIISERDLMSAMES 393 (526)
Q Consensus 377 ---i~gEk~~e~~v~~av~~ 393 (526)
+.|+++...+|++++.+
T Consensus 458 ~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 458 IINSSGYRIGPSEVENALME 477 (570)
T ss_dssp CEEETTEEECHHHHHHHHHT
T ss_pred EEEECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 25
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.28 E-value=1.1e-10 Score=129.14 Aligned_cols=130 Identities=13% Similarity=0.159 Sum_probs=85.3
Q ss_pred cCCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCC---CCcceecCCCceEEEeeeCC
Q 009765 241 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFD 314 (526)
Q Consensus 241 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~---~~~~~~l~~~~~f~EFip~~ 314 (526)
-.++|+ .++.||. ....+++.+.+ +++++ +.||.||+.+.......... ......+.++ .-+..++.+
T Consensus 300 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~~ 373 (617)
T 3rg2_A 300 QLASLK---LLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD-DEVWVADAE 373 (617)
T ss_dssp TTTTCC---EEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTT-CEEEEECTT
T ss_pred cCCCcc---EEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCC-ceEEEECCC
Confidence 346788 3344432 35556777777 58999 99999998654321111000 0011212223 344555533
Q ss_pred CCCccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCCC-
Q 009765 315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 376 (526)
Q Consensus 315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~- 376 (526)
+ ..+..|+.+||+|+.. .|.| -|||||+++.. ..-.+.|+||.|+
T Consensus 374 --------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~----~dG~l~~~GR~dd~ 436 (617)
T 3rg2_A 374 --------G-----NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID----PEGYITVQGREKDQ 436 (617)
T ss_dssp --------S-----CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEEEEECSSE
T ss_pred --------C-----CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc----CCceEEEEeecCCE
Confidence 2 3467899999999864 3333 29999999986 3468999999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 009765 377 --SSFEIISERDLMSAMES 393 (526)
Q Consensus 377 --i~gEk~~e~~v~~av~~ 393 (526)
++|+++...+|+.+|.+
T Consensus 437 iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 437 INRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp EEETTEEEEHHHHHHHHTT
T ss_pred EEECCEEeCHHHHHHHHHh
Confidence 89999999999988875
No 26
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.27 E-value=3.4e-11 Score=131.19 Aligned_cols=132 Identities=13% Similarity=0.062 Sum_probs=66.9
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCCCCc-ceecCCCceEEEeeeCCCCC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDMEK 317 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~-~~~l~~~~~f~EFip~~~~~ 317 (526)
+++|+ .+++||. ....+++++.+|...++ +.||.||+...+...+..+...+ .....++ .-++.+++++
T Consensus 306 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~-~~~~i~d~~~-- 378 (550)
T 3rix_A 306 LSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKVVPF-FEAKVVDLDT-- 378 (550)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEECTT-CEEEEECTTT--
T ss_pred ccccc---EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccccCC-cEEEEEeCCC--
Confidence 46777 4444442 45567788888644477 99999998443222222111111 1223333 4567777553
Q ss_pred ccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCCC---c
Q 009765 318 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 377 (526)
Q Consensus 318 ~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i 377 (526)
+ .++..|+.+||+|+.. .|.| .|+|||++++. ..-.+.|+||.++ +
T Consensus 379 -----~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~----~dG~l~~~GR~dd~ik~ 444 (550)
T 3rix_A 379 -----G-----KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD----EDEHFFIVDRLKSLIKY 444 (550)
T ss_dssp -----C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTCCEEEC---------
T ss_pred -----C-----cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe----CCceEEEEecchheeEE
Confidence 2 2456899999999863 2322 39999999986 3468999999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 009765 378 SFEIISERDLMSAMESF 394 (526)
Q Consensus 378 ~gEk~~e~~v~~av~~~ 394 (526)
.|+++...+|+++|.+.
T Consensus 445 ~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 445 KGYQVAPAELESILLQH 461 (550)
T ss_dssp -----------------
T ss_pred CCEEECHHHHHHHHHhC
Confidence 89999999999998864
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.26 E-value=1.8e-10 Score=125.41 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=49.5
Q ss_pred cccCCceEEEEEccC---CCeec-------------ceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHHHHHH
Q 009765 330 GVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSA 390 (526)
Q Consensus 330 ele~G~~yelVvTt~---~GL~R-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~v~~a 390 (526)
++..|+.+||+|... .|.|. |+|||++++ . .-.+.|+||.++ +.|+++...+|+.+
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-L----DGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-E----TTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-E----CCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 466899999999874 44443 999999987 3 257999999998 88999999999988
Q ss_pred HHHH
Q 009765 391 MESF 394 (526)
Q Consensus 391 v~~~ 394 (526)
+.+.
T Consensus 480 l~~~ 483 (576)
T 3gqw_A 480 AEQE 483 (576)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 8753
No 28
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.22 E-value=3e-10 Score=122.83 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=78.6
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCcee--eeecCC--CCCCCCcceecCCCceEEEeeeCC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDI--AQPPQTTRFVMLPTAAYFEFLPFD 314 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i--~i~~~~--~~~~~~~~~~l~~~~~f~EFip~~ 314 (526)
.|+|+ .+++||. ....+.+++. +++++ +.||.||+.. .+.... ..... ......+ ..-++.++.+
T Consensus 283 ~~~lr---~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~-~~G~~~~-~~~~~i~d~~ 354 (517)
T 3r44_A 283 APDFR---YFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAG-SAGRATM-FTDVAVRGDD 354 (517)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTT-CCBEECT-TEEEEEECTT
T ss_pred CCccc---EEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCC-CCCcCCC-CeEEEEECCC
Confidence 35677 4455543 2333445443 69999 9999999733 222111 11111 1111222 2334455432
Q ss_pred CCCccccCCceeccccccCCceEEEEEccC---CCee-------------cceeCCEEEEeeecCCCCEEEEeeeCCC--
Q 009765 315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 376 (526)
Q Consensus 315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~-------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~-- 376 (526)
+. .+..| .+||+|+.. .|.| .|+|||++++. ..-.+.|+||.++
T Consensus 355 --------~~-----~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~----~dG~l~~~GR~dd~i 416 (517)
T 3r44_A 355 --------GV-----IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEID----DEGYLYIKDRLKDMI 416 (517)
T ss_dssp --------SC-----EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEEC----TTSCEEEEECGGGCE
T ss_pred --------CC-----CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEc----CCeeEEEecCCcCEE
Confidence 22 23467 899999873 4444 29999999986 3468999999998
Q ss_pred -cceeecCHHHHHHHHHH
Q 009765 377 -SSFEIISERDLMSAMES 393 (526)
Q Consensus 377 -i~gEk~~e~~v~~av~~ 393 (526)
++|+++...+|++++.+
T Consensus 417 k~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 417 ISGGENVYPAEIESVIIG 434 (517)
T ss_dssp EETTEEECHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 29
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.21 E-value=2.4e-11 Score=132.23 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=69.5
Q ss_pred CCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCC---CCcceecCCCceEEEeeeCCCC
Q 009765 242 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFDME 316 (526)
Q Consensus 242 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~---~~~~~~l~~~~~f~EFip~~~~ 316 (526)
.++|+. ++.+|. . ....+++++.+ +++++ +.||.||+.+.+........ ......+. ...-++.++.+
T Consensus 306 ~~~lr~--i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~-~~~~~~i~d~~-- 378 (544)
T 3o83_A 306 IQSLKL--LQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPIS-SDDEIKIVDEQ-- 378 (544)
T ss_dssp HTTCCE--EEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESC-TTCEEEEECTT--
T ss_pred CCcceE--EEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecC-CCcEEEEECCC--
Confidence 357773 333443 2 45557777778 58999 99999998654321111000 00112112 33346666643
Q ss_pred CccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCCC---
Q 009765 317 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 376 (526)
Q Consensus 317 ~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~--- 376 (526)
+ .++..|+.+||+|+.. .|.| .|+|||++++. ..-.+.|+||.++
T Consensus 379 ------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~----~dG~l~~~GR~dd~ik 443 (544)
T 3o83_A 379 ------Y-----REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT----PDGNLRVVGRIKDQIN 443 (544)
T ss_dssp ------S-----CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEEC----TTSCEEEEEEEC----
T ss_pred ------C-----CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEc----CCCCEEEEeecCCEEE
Confidence 2 3467899999999874 3333 39999999987 3468999999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 009765 377 SSFEIISERDLMSAMESF 394 (526)
Q Consensus 377 i~gEk~~e~~v~~av~~~ 394 (526)
+.|+++...+|++++.+.
T Consensus 444 ~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 444 RGGEKIASEEIEKLILLH 461 (544)
T ss_dssp ------------------
T ss_pred eCCEEECHHHHHHHHHhC
Confidence 889999999999998864
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.16 E-value=2.8e-10 Score=124.07 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=65.5
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeee---ecCCCCCCCCcceecCCCceEEEeeeCCC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIAQPPQTTRFVMLPTAAYFEFLPFDM 315 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i---~~~~~~~~~~~~~~l~~~~~f~EFip~~~ 315 (526)
.++|+ .+.+||. ....+++++.+ +++++ +.||.||+.+.. +..+..... ......++ .-...++++.
T Consensus 293 ~~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~-~~G~p~~~-~~~~i~d~~~ 365 (562)
T 3ite_A 293 APHLV---YLGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGD-SVAHVLAPGS 365 (562)
T ss_dssp STTCC---EEEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTT-EEEEECTT-CEEEEECTTS
T ss_pred cCceE---EEEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCc-cccccCCC-CeEEEEeCCC
Confidence 45777 3344443 23334454444 58999 999999974322 111111111 11222233 3456666543
Q ss_pred CCccccCCceeccccccCCceEEEEEccC---CCee---------------cceeCCEEEEeeecCCCCEEEEeeeCCC-
Q 009765 316 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 376 (526)
Q Consensus 316 ~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~---------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~- 376 (526)
+ .++.+|+.+||+|... .|.| .|+|||++++. ..-.+.|+||.++
T Consensus 366 -------~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d----~dG~l~~~GR~dd~ 429 (562)
T 3ite_A 366 -------N-----EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD----ADSSILFLGRKDEQ 429 (562)
T ss_dssp -------S-----CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC----TTSCEEEEEEC---
T ss_pred -------C-----CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc----CCCeEEEEccccCE
Confidence 2 2467899999999763 3333 49999999986 3468999999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 009765 377 --SSFEIISERDLMSAMESF 394 (526)
Q Consensus 377 --i~gEk~~e~~v~~av~~~ 394 (526)
+.|+++...+|+++|.+.
T Consensus 430 Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 430 VKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp --------------------
T ss_pred EeECcEEECHHHHHHHHHhc
Confidence 889999999999998865
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.15 E-value=9.9e-10 Score=117.90 Aligned_cols=231 Identities=14% Similarity=0.103 Sum_probs=124.3
Q ss_pred cCCCceeeecccccCCCcceecccChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCCccccCCceeeecc
Q 009765 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAAS 167 (526)
Q Consensus 88 ~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~gip~g~~s 167 (526)
.++.+.+...||||| |+||-+..|.+.+..... .. . .. .++..+..+. . ..+..+. .|+.
T Consensus 161 ~~~d~a~i~~TSGTT-G~PKgv~~th~~~~~~~~----~~----~-~~--~~~~~~d~~l-~-~~p~~~~-~g~~----- 220 (501)
T 3ipl_A 161 NLDDIASIMFTSGTT-GPQKAVPQTFRNHYASAI----GC----K-ES--LGFDRDTNWL-S-VLPIYHI-SGLS----- 220 (501)
T ss_dssp CTTSEEEEEECCTTT-SCCCEEEEEHHHHHHHHH----HH----H-HH--TCCCTTCEEE-E-CSCTTSH-HHHH-----
T ss_pred CCCCeEEEEECCCCC-CCCcEEEEeHHHHHHHHH----HH----H-Hh--hCCCccCEEE-E-eCcHHHH-HHHH-----
Confidence 345677999999999 999999999887543221 11 1 11 2333222222 2 1111111 0100
Q ss_pred chhHHHHHHHHh--hh-HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcccccCCC
Q 009765 168 AFPLQGLIGAFS--FF-ESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPN 244 (526)
Q Consensus 168 ~~~~~~ll~~~~--~l-~~~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~lWP~ 244 (526)
..+..++.... +. ..+-+.+++.|++..++. +.+.|+ .+..|.+..... .. +
T Consensus 221 -~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~-------------~~~~P~--~~~~l~~~~~~~-------~~--~ 275 (501)
T 3ipl_A 221 -VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITH-------------ISLVPQ--TLNWLMQQGLHE-------PY--N 275 (501)
T ss_dssp -HHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCE-------------EEECHH--HHHHHHHHTCCS-------CT--T
T ss_pred -HHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcE-------------EEchHH--HHHHHHhcCCCC-------cC--c
Confidence 00001111000 00 113456667777776332 443444 555555443321 11 6
Q ss_pred CceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCcee-eeecCCC---CCCCCcceecCCCceEEEeeeCCCCC
Q 009765 245 VRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIA---QPPQTTRFVMLPTAAYFEFLPFDMEK 317 (526)
Q Consensus 245 L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i-~i~~~~~---~~~~~~~~~l~~~~~f~EFip~~~~~ 317 (526)
|+ .+++||. ....+++++ + +++++ +.||+||+.. .....+. .... ......++ .-++.++++
T Consensus 276 lr---~i~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~-~~G~p~~~-~~~~i~d~~--- 344 (501)
T 3ipl_A 276 LQ---KILLGGAKLSATMIETALQ-Y-NLPIY-NSFGMTETCSQFLTATPEMLHARPD-TVGMPSAN-VDVKIKNPN--- 344 (501)
T ss_dssp CC---EEEECSSCCCHHHHHHHHH-T-TCCEE-EEEEEGGGTEEEEEECHHHHHHCTT-CCBEECTT-CEEEEESCC---
T ss_pred cc---EEEEeCCCCCHHHHHHHHH-h-CCCEe-ccccccccccceeecCccccccCCC-CCCCCCCC-cEEEEecCC---
Confidence 77 3344442 334455555 4 69999 9999999632 2211110 0000 01112222 233444321
Q ss_pred ccccCCceeccccccCCceEEEEEccC---CCeec------------ceeCCEEEEeeecCCCCEEEEeeeCCC---cce
Q 009765 318 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSF 379 (526)
Q Consensus 318 ~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~R------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---i~g 379 (526)
.|+.+||+|... .|.|. |+|||++++. ....+.|+||.++ ++|
T Consensus 345 ---------------~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G 405 (501)
T 3ipl_A 345 ---------------KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEID----HEGYVMIYDRRKDLIISGG 405 (501)
T ss_dssp ---------------SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEEC----TTSCEEEEEECCCCEECSS
T ss_pred ---------------CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEc----CCCeEEEEccccceEEECC
Confidence 467799999764 34332 9999999986 3468999999998 889
Q ss_pred eecCHHHHHHHHHH
Q 009765 380 EIISERDLMSAMES 393 (526)
Q Consensus 380 Ek~~e~~v~~av~~ 393 (526)
+++...+|++++.+
T Consensus 406 ~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 406 ENIYPYQIETVAKQ 419 (501)
T ss_dssp CEECHHHHHHHHTT
T ss_pred EEECHHHHHHHHHh
Confidence 99999999988875
No 32
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.14 E-value=1.9e-09 Score=118.01 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCCceEEEEecCchhhhHHHHHHHhCCCCeeccccccCCcee--eeec-CCCCCCCC-cceecCCCceEEEeeeCCCCCc
Q 009765 243 PNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV--GINL-DIAQPPQT-TRFVMLPTAAYFEFLPFDMEKN 318 (526)
Q Consensus 243 P~L~~i~~~~~G~~~~y~~~l~~~~g~v~v~~~~Y~aSEg~i--~i~~-~~~~~~~~-~~~~l~~~~~f~EFip~~~~~~ 318 (526)
++++ .+++||.....+.++.+...++++ +.||.||+.+ .... ........ ......++ .-+..++.+
T Consensus 293 ~~lr---~~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~-~~v~i~d~~---- 363 (563)
T 1amu_A 293 LSIQ---TLITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPIQN-TQIYIVDEN---- 363 (563)
T ss_dssp CSCS---EEEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEECTT-EEEEEECTT----
T ss_pred cccc---EEEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCcccceeCC-CEEEEECCC----
Confidence 4677 334444332222233333348888 9999999743 2211 11110000 01112333 345566643
Q ss_pred cccCCceeccccccCCceEEEEEccC---CCee--------------------cceeCCEEEEeeecCCCCEEEEeeeCC
Q 009765 319 EAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------------RYRLGDIVKVVDFYNSSPQVEFVMRAP 375 (526)
Q Consensus 319 ~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------------RYr~GDvV~v~g~~~~~P~i~f~gR~~ 375 (526)
+ .++..|+.+||+|+.. .|.| .|+|||++++.. .-.+.|+||.+
T Consensus 364 ----~-----~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~~ 430 (563)
T 1amu_A 364 ----L-----QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRID 430 (563)
T ss_dssp ----S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEGG
T ss_pred ----c-----CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEecccc
Confidence 2 2456899999999764 2322 699999998863 45799999999
Q ss_pred C---cceeecCHHHHHHHHHH
Q 009765 376 K---SSFEIISERDLMSAMES 393 (526)
Q Consensus 376 ~---i~gEk~~e~~v~~av~~ 393 (526)
+ +.|+++...+|++++.+
T Consensus 431 d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 431 NQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp GEEEETTEEEEHHHHHHHHTT
T ss_pred CEEEECCEEeCHHHHHHHHHh
Confidence 8 88999999999988875
No 33
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.12 E-value=3.7e-10 Score=131.36 Aligned_cols=132 Identities=13% Similarity=0.137 Sum_probs=72.2
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCcee--eeecC--CCC-CCCC-cceecCCCceEEEeee
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLD--IAQ-PPQT-TRFVMLPTAAYFEFLP 312 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i--~i~~~--~~~-~~~~-~~~~l~~~~~f~EFip 312 (526)
.++|+ .+.+||. ....+++++.|++++++ +.||.||+.. +.... ... +... ......++ .-++.++
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d 417 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRN-AEMKIVD 417 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSS-CEEEEEC
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCC-cEEEEEe
Confidence 35777 4455543 35567888888889999 9999999843 22211 000 0000 11222333 3467777
Q ss_pred CCCCCccccCCceeccccccCCceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCC
Q 009765 313 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAP 375 (526)
Q Consensus 313 ~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~ 375 (526)
+++ + ..+..|+.+||+|+.. .|.| -|||||++++. ..-.+.|+||.+
T Consensus 418 ~~~-------~-----~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~d 481 (979)
T 3tsy_A 418 PDT-------G-----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID----DDDELFIVDRLK 481 (979)
T ss_dssp TTS-------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEEEEESC
T ss_pred CCC-------C-----CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEc----CCceEEEecCCC
Confidence 553 2 3456899999999863 3333 29999999986 345799999999
Q ss_pred C---cceeecCHHHHHHHHHHH
Q 009765 376 K---SSFEIISERDLMSAMESF 394 (526)
Q Consensus 376 ~---i~gEk~~e~~v~~av~~~ 394 (526)
+ ++|+++...+|+.+|.+.
T Consensus 482 d~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 482 ELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp C---------------------
T ss_pred CEEEECCEEECHHHHHHHHHhC
Confidence 8 889999999999988764
No 34
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.11 E-value=2.9e-10 Score=124.39 Aligned_cols=132 Identities=18% Similarity=0.132 Sum_probs=66.5
Q ss_pred CCCCceEEEEecCc-h-hhhHHHHHHHhCCCCeeccccccCCcee--eeec-CCCCCCCC--cceecCCCceEEEeeeCC
Q 009765 242 WPNVRYIKCVTTGS-M-SQYCSKIKYYAGEVPVLGGDYFASECYV--GINL-DIAQPPQT--TRFVMLPTAAYFEFLPFD 314 (526)
Q Consensus 242 WP~L~~i~~~~~G~-~-~~y~~~l~~~~g~v~v~~~~Y~aSEg~i--~i~~-~~~~~~~~--~~~~l~~~~~f~EFip~~ 314 (526)
+++|+ .++.+|. + .....++.+.+++++++ ++||.||+.. .... ........ ......++ .-+..++.+
T Consensus 325 ~~~lr--~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~-~~v~i~d~~ 400 (570)
T 4gr5_A 325 FEGVR--YAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAG-KRAYVLDDD 400 (570)
T ss_dssp GTTCS--EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTT-EEEEEECTT
T ss_pred CCCce--EEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccceeeCC-CEEEEECCC
Confidence 45778 2333443 2 35557777778789999 9999999732 2111 10000000 01222233 345566533
Q ss_pred CCCccccCCceeccccccCCceEEEEEccC---CCee----------------------cceeCCEEEEeeecCCCCEEE
Q 009765 315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY----------------------RYRLGDIVKVVDFYNSSPQVE 369 (526)
Q Consensus 315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL~----------------------RYr~GDvV~v~g~~~~~P~i~ 369 (526)
+ .++..|+.+||+|... .|.| -|||||++++. ..-.+.
T Consensus 401 --------~-----~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d----~dG~l~ 463 (570)
T 4gr5_A 401 --------L-----KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRR----ADGVLE 463 (570)
T ss_dssp --------S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEEC----TTSCEE
T ss_pred --------C-----CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEEC----CCCeEE
Confidence 2 3467899999999763 3332 39999999986 346799
Q ss_pred EeeeCCC---cceeecCHHHHHHHHHHH
Q 009765 370 FVMRAPK---SSFEIISERDLMSAMESF 394 (526)
Q Consensus 370 f~gR~~~---i~gEk~~e~~v~~av~~~ 394 (526)
|+||.++ +.|+++...+|+++|.+.
T Consensus 464 ~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 464 YVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp EEEC------------------------
T ss_pred EEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 9999998 889999999999998864
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.10 E-value=6.9e-10 Score=123.02 Aligned_cols=131 Identities=13% Similarity=0.059 Sum_probs=83.0
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceee--ee-cCCCCCC-C-CcceecCCCceEEEeeeC
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVG--IN-LDIAQPP-Q-TTRFVMLPTAAYFEFLPF 313 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~--i~-~~~~~~~-~-~~~~~l~~~~~f~EFip~ 313 (526)
.++|+ .++.||. .....++.+.+++++++ +.||.||+.+. .. ....... . .......++ .-+..++.
T Consensus 275 l~~lr---~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~-~~~~i~d~ 349 (620)
T 4dg8_A 275 LGGLR---QLLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAG-TAVLLLDE 349 (620)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTT-EEEEEECT
T ss_pred CCCcc---EEEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCceecccC-cEEEEECc
Confidence 35778 3344443 24445555666789999 99999997432 11 1110000 0 011112233 34566664
Q ss_pred CCCCccccCCceeccccccCCceEEEEEccC---CCe---------------------ecceeCCEEEEeeecCCCCEEE
Q 009765 314 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF---------------------YRYRLGDIVKVVDFYNSSPQVE 369 (526)
Q Consensus 314 ~~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL---------------------~RYr~GDvV~v~g~~~~~P~i~ 369 (526)
+. .. -+..|+.+||+|... .|. -.|||||+++.. ..-.+.
T Consensus 350 ~~--------~~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~----~dG~l~ 413 (620)
T 4dg8_A 350 HG--------QE----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD----EQGRLR 413 (620)
T ss_dssp TS--------CB----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC----TTSCEE
T ss_pred cC--------CC----CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC----CCCeEE
Confidence 42 11 146899999999642 222 239999999986 346899
Q ss_pred EeeeCCC---cceeecCHHHHHHHHHH
Q 009765 370 FVMRAPK---SSFEIISERDLMSAMES 393 (526)
Q Consensus 370 f~gR~~~---i~gEk~~e~~v~~av~~ 393 (526)
|+||.|+ ++|+++...+|+.++.+
T Consensus 414 ~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 414 FIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp EEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred EEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 9999998 89999999999998885
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.03 E-value=2.6e-10 Score=117.93 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=73.0
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceeeeecCCCCCCCCcceecCCCceEEEeeeCCCCCc
Q 009765 242 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 318 (526)
Q Consensus 242 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~ 318 (526)
.++|+ .+.+||. ....+++++ + +++++ ++||.||+...+...+...+..+ .. .++..
T Consensus 147 l~~lr---~v~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TEt~~~~~~~~~~~~~~g-------~~---~~~~p---- 206 (358)
T 4gs5_A 147 VDRLG---KVLLGGAPVNHALAMQISD-L-AMPVY-QSYGMTETVSHVALKALNGPEAS-------EL---YVFLP---- 206 (358)
T ss_dssp GGGGC---SEEECSSCCCHHHHHHHHT-C-SSCEE-EEEECGGGSSEEEEEECSSTTCC-------SC---EEECT----
T ss_pred CCcce---EEEEcccCCCchheecccc-c-CceEE-eccccccccceeecccccccccc-------ee---eccCC----
Confidence 35677 3344443 233345544 3 59999 99999997433222111111101 11 01211
Q ss_pred cccCCceeccccccCCceEEEEEccC-CCeecceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 009765 319 EAVGEETVDFSGVEIGKMYEVVVTTY-RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 394 (526)
Q Consensus 319 ~~~~~~~l~l~ele~G~~yelVvTt~-~GL~RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~v~~av~~~ 394 (526)
--++..++.+|+++... ..-.-|+|||++++.. -.+.|+||.|+ +.|+++...+|++++...
T Consensus 207 ---------gv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~-----~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 207 ---------GIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHG-----NAFQWIGRADNVINSGGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp ---------TCEEEECTTSEEEEESGGGTTCCEEEEEEEEECS-----SEEEEEEEGGGEEEETTEEEEHHHHHHHHHHH
T ss_pred ---------CeEEEecCcCceEEecccccCcceecCCcccccc-----CceEEcccccCeEEECCEEECHHHHHHHHHHh
Confidence 12344566788888753 1123489999999874 13789999998 889999999999988765
Q ss_pred HH
Q 009765 395 QM 396 (526)
Q Consensus 395 ~~ 396 (526)
..
T Consensus 273 ~~ 274 (358)
T 4gs5_A 273 FH 274 (358)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 37
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=98.94 E-value=9.6e-10 Score=119.53 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHHHHhhCCCCHHHHHHHHHHhccCCCCCcccccCCCCceEEEEecCch---hhhH
Q 009765 184 KWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSM---SQYC 260 (526)
Q Consensus 184 ~w~~l~~dI~~g~~~~~~~~~~~r~~l~~~~g~P~p~~a~~L~~~~~~~g~~g~~~~lWP~L~~i~~~~~G~~---~~y~ 260 (526)
+.+.+++.|++..++. +.+.|+ ....|.+.....+ .-.++|+ .+++||. ...+
T Consensus 255 ~~~~~~~~i~~~~~t~-------------~~~~P~--~~~~l~~~~~~~~------~~l~~lr---~i~~gG~~l~~~~~ 310 (541)
T 1v25_A 255 DPASLVELFDGEGVTF-------------TAGVPT--VWLALADYLESTG------HRLKTLR---RLVVGGSAAPRSLI 310 (541)
T ss_dssp SHHHHHHHHHHTTCCE-------------EEECHH--HHHHHHHHHHHHT------CCCSSCC---EEEECSSCCCHHHH
T ss_pred CHHHHHHHHHhcCeeE-------------EecchH--HHHHHHhhhhccC------Ccchhcc---EEEECCCCCCHHHH
Confidence 3456677777776333 333444 4444444433211 1124677 3444443 3444
Q ss_pred HHHHHHhCCCCeeccccccCCcee-eeecCCCC-----CCC------CcceecCCCceEEEeeeCCCCCccccCCceecc
Q 009765 261 SKIKYYAGEVPVLGGDYFASECYV-GINLDIAQ-----PPQ------TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDF 328 (526)
Q Consensus 261 ~~l~~~~g~v~v~~~~Y~aSEg~i-~i~~~~~~-----~~~------~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~l 328 (526)
+++ +.+ +++++ +.||.||+.. ........ ++. .......++ .-++.++.+ +.
T Consensus 311 ~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d~~--------g~---- 374 (541)
T 1v25_A 311 ARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL-VRLRVADEE--------GR---- 374 (541)
T ss_dssp HHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTT-CEEEEECTT--------SC----
T ss_pred HHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCCcCCC-cEEEEECCC--------CC----
Confidence 566 446 58999 9999999743 22111110 000 001112233 345666643 22
Q ss_pred ccccC--CceEEEEEccC---CCee--------------cceeCCEEEEeeecCCCCEEEEeeeCCC---cceeecCHHH
Q 009765 329 SGVEI--GKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERD 386 (526)
Q Consensus 329 ~ele~--G~~yelVvTt~---~GL~--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~---i~gEk~~e~~ 386 (526)
++.. |+.+||+|+.. .|.| -|+|||++++.. .-.+.|+||.++ +.|+++...+
T Consensus 375 -~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG~l~~~GR~~d~ik~~G~~v~p~e 449 (541)
T 1v25_A 375 -PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EGYVEIKDRLKDLIKSGGEWISSVD 449 (541)
T ss_dssp -BCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TCCEEEEEESSCEEEETTEEEEHHH
T ss_pred -CCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----CceEEEeecccceeeeCCEEECHHH
Confidence 2332 36899999863 3433 299999999863 457999999999 8899999999
Q ss_pred HHHHHHHH
Q 009765 387 LMSAMESF 394 (526)
Q Consensus 387 v~~av~~~ 394 (526)
|++++.+.
T Consensus 450 IE~~l~~~ 457 (541)
T 1v25_A 450 LENALMGH 457 (541)
T ss_dssp HHCC----
T ss_pred HHHHHHhC
Confidence 99998864
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.93 E-value=2.4e-08 Score=119.56 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCeeccccccCCceee--ee-cCCCCCC-C-CcceecCCCceEEEeeeCC
Q 009765 243 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVG--IN-LDIAQPP-Q-TTRFVMLPTAAYFEFLPFD 314 (526)
Q Consensus 243 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~v~~~~Y~aSEg~i~--i~-~~~~~~~-~-~~~~~l~~~~~f~EFip~~ 314 (526)
++|+ +++.||. ....+++.+.++++.++ +.||.||+.+. .. ....... . .......++. -+..++.+
T Consensus 720 ~~lr---~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~i~d~~ 794 (1304)
T 2vsq_A 720 KGLR---CILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNA-SVYILNEQ 794 (1304)
T ss_dssp HTCS---EEEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTE-EEEEECTT
T ss_pred CCcc---EEEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCceeeCCC-EEEEECCC
Confidence 4677 3344442 34556677778778999 99999998542 11 1110000 0 0011122332 23344432
Q ss_pred CCCccccCCceeccccccCCceEEEEEccC---CCe--------------------ecceeCCEEEEeeecCCCCEEEEe
Q 009765 315 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF--------------------YRYRLGDIVKVVDFYNSSPQVEFV 371 (526)
Q Consensus 315 ~~~~~~~~~~~l~l~ele~G~~yelVvTt~---~GL--------------------~RYr~GDvV~v~g~~~~~P~i~f~ 371 (526)
. ..+..|+.+||+|... .|. -.|||||+++.. ..-.++|+
T Consensus 795 --------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~----~dG~l~~~ 857 (1304)
T 2vsq_A 795 --------S-----QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWL----PDGTIEYA 857 (1304)
T ss_dssp --------S-----CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEEC----TTSCEEEE
T ss_pred --------c-----CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEc----CCCeEEEE
Confidence 2 2356899999999763 221 259999999987 34579999
Q ss_pred eeCCC---cceeecCHHHHHHHHHH
Q 009765 372 MRAPK---SSFEIISERDLMSAMES 393 (526)
Q Consensus 372 gR~~~---i~gEk~~e~~v~~av~~ 393 (526)
||.|+ ++|.++...+|+.+|.+
T Consensus 858 GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 858 GRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp EEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred cCCCCEEEECCEeeCHHHHHHHHHh
Confidence 99998 99999999999998875
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.37 E-value=5e-06 Score=88.04 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=19.0
Q ss_pred cCCCceeeecccccCCCcceecccChHHHHH
Q 009765 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSK 118 (526)
Q Consensus 88 ~~~~i~~f~~TSGTTsG~~K~iP~t~~~~~~ 118 (526)
..+.+.+...||||| |+||-+..|.+.+..
T Consensus 181 ~~~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 181 EYPSTAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp SCCSEEEEECC-------CCCEEEEHHHHHH
T ss_pred CCCceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 345567899999999 999999999987644
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=96.14 E-value=0.0082 Score=50.47 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=56.3
Q ss_pred eCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHH
Q 009765 373 RAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSL 449 (526)
Q Consensus 373 R~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~l 449 (526)
|.|| ++|.++++.+|+++|.+. .++.- .+++..+.........++||...+ ...+...++.+++.+
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~-------p~v~~-~~vv~v~~~~~~~~~~~~V~~~~~---~~~~~~~~~~l~~~i 70 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF-------KELGS-DYLITLETAESNDEMTVEVELSQL---FTDDYGRLQALTREI 70 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC-------TTEEE-EEEEEEEEETTEEEEEEEEEECTT---CCCCHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC-------CCccc-ceEEEEeccccceeEEEEEEEeec---cccccchhhhhHHHH
Confidence 7777 899999999999888753 34221 334333322222345578887644 224455666677777
Q ss_pred HHHhChhHHhhhhcCCCCCcEEEEeCCCcHH
Q 009765 450 EDAFGSIYKVQRDRGEISPLSVSIVKPGTFD 480 (526)
Q Consensus 450 d~~Ln~~Y~~~R~~~~l~p~~v~~v~~g~f~ 480 (526)
.+++ +....+ ++.|.+|++|+++
T Consensus 71 ~~~l-------~~~~gv-~~~v~~v~~~~lP 93 (109)
T 3lax_A 71 TRQL-------KDEILV-TPRVKLVPKGALP 93 (109)
T ss_dssp HHHH-------HHHHSS-CCEEEEECTTCSC
T ss_pred HHHH-------HHHhCC-ccceEEEcCCeec
Confidence 7766 212124 4579999999998
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=95.97 E-value=0.011 Score=49.89 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=55.7
Q ss_pred eeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHH
Q 009765 372 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSS 448 (526)
Q Consensus 372 gR~~~---i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~~~ 448 (526)
||.++ ++|.++++.+|++++.+. .++.- .|++..+.....-..++++|+ .+. ...+....+++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-------p~v~~-~~~v~v~~~~~~e~l~~~ve~-~~~--~~~~~~~~~~l~~~ 69 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-------KELGS-DYLITLETAESNDEMTVEVEL-SQL--FTDDYGRLQALTRE 69 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-------TTEEE-EEEEEEEEETTEEEEEEEEEE-CTT--CCCCHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-------CCcCC-cEEEEEEcCCCceEEEEEEEE-cCc--cccchhHHHHHHHH
Confidence 78888 889999999999998863 23221 455443322222356789998 431 00112344456666
Q ss_pred HHHHhChhHHhhhhcCCCCCcEEEEeCCCcHHH
Q 009765 449 LEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDR 481 (526)
Q Consensus 449 ld~~Ln~~Y~~~R~~~~l~p~~v~~v~~g~f~~ 481 (526)
+.+.+ +....+.| .|.+|++|++++
T Consensus 70 i~~~l-------~~~~~~~~-~v~~v~~~~lPr 94 (109)
T 3gxs_A 70 ITRQL-------KDEILVTP-RVKLVPKGALPK 94 (109)
T ss_dssp HHHHH-------HHHHSSCC-EEEEECTTCSCC
T ss_pred HHHHH-------HHhhCCce-EEEEECCCCccC
Confidence 66666 22223444 999999999873
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=54.56 E-value=31 Score=26.66 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=36.9
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEe
Q 009765 380 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 428 (526)
Q Consensus 380 Ek~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 428 (526)
.+..|+.+++||.+|.+.+.++.++.+.+..+.... +.-.||.+-+..
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV 62 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEV 62 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865567778887777654 346789866664
No 43
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=47.28 E-value=42 Score=25.62 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=35.5
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEe
Q 009765 380 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 428 (526)
Q Consensus 380 Ek~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 428 (526)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+.+
T Consensus 13 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV 60 (68)
T 2cc6_A 13 EESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGA-VEERTYQTEVQV 60 (68)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTT-SSSCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865456667776666544 335799876665
No 44
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=38.65 E-value=44 Score=25.60 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=34.8
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEe
Q 009765 380 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 428 (526)
Q Consensus 380 Ek~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 428 (526)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+.+
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkV 62 (69)
T 2ux9_A 15 EEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGE-AGVKEYQVVLEV 62 (69)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865456667776666544 334788866654
No 45
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=37.93 E-value=45 Score=25.76 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=35.0
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEe
Q 009765 380 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 428 (526)
Q Consensus 380 Ek~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 428 (526)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+.+
T Consensus 16 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~d-gki~~yqV~lKV 63 (72)
T 2vxa_A 16 PNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEG-GRVNHWQVTVKV 63 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865456667776666544 335788866654
No 46
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=35.16 E-value=49 Score=25.33 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=34.5
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEe
Q 009765 380 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 428 (526)
Q Consensus 380 Ek~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 428 (526)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+.+
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkv 62 (69)
T 2yiz_A 15 PDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVD-GAVAHFQVTMKV 62 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 466799999999999998865456667776666544 334688866654
No 47
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=35.10 E-value=2.2e+02 Score=24.65 Aligned_cols=102 Identities=11% Similarity=0.157 Sum_probs=59.0
Q ss_pred EEeeeCCC--cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHH
Q 009765 369 EFVMRAPK--SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCC 446 (526)
Q Consensus 369 ~f~gR~~~--i~gEk~~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~~~~~~ 446 (526)
.|+++... +.++ ....+.+.+.+++. . .++.|.+|++. |-|..++|++.+. . .-......+.
T Consensus 26 v~~~k~R~~vf~~~--~~~~l~~~l~~~~~--~--~~~~i~a~~vm------pDHVHlLv~~~p~---~-slS~~~~~lK 89 (159)
T 2vjv_A 26 VWCPKYRRKVLVGA--VEMRLKEIIQEVAK--E--LRVEIIEMQTD------KDHIHILADIDPS---F-GVMKFIKTAK 89 (159)
T ss_dssp EECBGGGCCCCSHH--HHHHHHHHHHHHHH--H--TTCEEEEEEEE------TTEEEEEEECCTT---T-CHHHHHHHHH
T ss_pred EEeccCCccccCcc--HHHHHHHHHHHhhc--c--CCEEEEEEeec------CCcEEEEEecCCC---c-chhHHHhhcc
Confidence 44444333 4443 35677788888887 4 58899998876 5588899987532 1 1112222222
Q ss_pred HHHHHHhChhHHhhhhc-CCC--CCcEEEEeCCCcHHHHHHHH
Q 009765 447 SSLEDAFGSIYKVQRDR-GEI--SPLSVSIVKPGTFDRLLQVA 486 (526)
Q Consensus 447 ~~ld~~Ln~~Y~~~R~~-~~l--~p~~v~~v~~g~f~~~~~~~ 486 (526)
..--..+|..|...+.. +.+ ..--++.|...++....++-
T Consensus 90 ~~sSr~i~~~~~~~~~~~~~lWq~~Y~~~tv~~~~~~~i~~YI 132 (159)
T 2vjv_A 90 GRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYI 132 (159)
T ss_dssp HHHHHHHHHHCHHHHHSCSCSBCSCEEEEEECSSCHHHHHHHH
T ss_pred ccccHHHHHHchhhhhcCccceeCCEEeEEeCCccHHHHHHHH
Confidence 22222334444332222 434 56667788766888888874
No 48
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=28.76 E-value=27 Score=21.18 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=14.4
Q ss_pred CCCcchhhhhHHHHHHhC
Q 009765 59 VPLSCYDDYADHINQLAG 76 (526)
Q Consensus 59 vPl~~y~d~~~~ier~~~ 76 (526)
||+.+|+|++--.|+..+
T Consensus 2 vPiFt~selqr~qEkErN 19 (26)
T 1lbj_A 2 VPIFTYGELQRMQEKERN 19 (26)
T ss_dssp CCTTCHHHHHHHHHHHHH
T ss_pred CceeeHHHHHHHHHHHhc
Confidence 899999999777766553
No 49
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=21.24 E-value=46 Score=28.31 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=29.8
Q ss_pred EEEeeeCCCCCccccCCceeccccccCCceEEEEEccCCC--eecceeCCEE
Q 009765 307 YFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG--FYRYRLGDIV 356 (526)
Q Consensus 307 f~EFip~~~~~~~~~~~~~l~l~ele~G~~yelVvTt~~G--L~RYr~GDvV 356 (526)
.+...+..+ .+-++. ...|+.|+++|.+..| +|||.-|+.+
T Consensus 23 ~ltv~N~s~------~~v~l~---f~Sgq~~Df~v~d~~G~~VwrwS~~~~F 65 (120)
T 3isy_A 23 NMSLKNQSE------RAIEFQ---FSTGQKFELVVYDSEHKERYRYSKEKMF 65 (120)
T ss_dssp EEEEEECSS------SCEEEE---ESSSCCEEEEEECTTCCEEEETTTTCCC
T ss_pred EEEEEcCCC------CcEEEE---eCCCCEEEEEEECCCCCEEEEccccchh
Confidence 455666442 244443 4589999999999888 9999998876
Done!